Citrus Sinensis ID: 038416

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------
Protein Sequence
QSERKGQETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAKKQ
Secondary Structure (PSIPRED)
cHHHHccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccccEEEcccHHHHHHHHHHHHcccccEEEEccccccccHHHHcccccccEEEEEcccccccccccHHHHHHHcccccEEEEEEcccccccccccHHHHHHHHHHHHHcccEEEEcccccccccccccccccccccccccEEEEcccccccccccccccHHccccccHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHccEEEEccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccccHccEEEccHHHHHHHHHHHHHHccccEEEEEcccEEccHHHHHHcccccEEEEEEEEHHHccEEcHHHHHHHccccEEEEEEEcccccccccccHHHHHHHHHHHHHHcccEEEEccccccEccccEEEEEEEccccccEEEEEEcccccccHHHccEEEEEEccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccEccEEEEEEcHHHEcccccHHHHHHHHHHHHcEEcEEHHHHccccEEEEEccccHHHHHHHHHHHHHHHHHHEHcc
Coil and Loop (DISEMBL)
qserkgqetrhspwprrplgvsllsdstvAEDAVVDALRTAhyncysptlgvpsarRGIADYLnrdlpyklspedvyLTLGCSQAIEISLSVlarpganiliprpgyplyeihaagsnnnlearhydllpekrwevDLDGVEALADENTVAIVIInpgnpcgnvfSYQHLQKIARTARNLGIIVIADEVynhlafgstpyvpmgvfgsIVPVITlgsiskrwivpgwrlgwlvtsdpngilqnsgfvdsikgclnaashpvtfIQAAVPRIVDETNEAFFAKIIGLLKETADICYERikeipcitcpvkpqgaMFVMVKLNVSMLEDIGDDLEFCLKLAKEesviilpgrtvgmKNWLRIAFAAEPATLEDGLERIKAFCQRHAKKQ
Flexible Loop (DISEMBL)
qserkgqetrhspwprrplgvsllsdSTVAEDAVVDALRTAHyncysptlgvpsaRRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEesviilpgrtvgMKNWLRIAFAAEPATLEDGLERIKAFCQRHAKKQ
Low Complexity Region (SEG)
QSERKGQETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAKKQ
Disordered region (IsUnstruct)
**********************LLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFC*******
Disordered Region (DISOPRED)
******Q***HSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRH****
Disordered Region (DISEMBL)
*************WPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAF********
Disordered Region (DISPRO)
**********HSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAKK*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
QSERKGQETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAKKQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	387	2.2.26 [Sep-21-2011]
Q9FN30	414	Probable aminotransferase	yes	no	0.950	0.888	0.605	1e-136
Q9LVY1	420	Tyrosine aminotransferase	no	no	0.948	0.873	0.590	1e-131
Q9ST02	461	Nicotianamine aminotransf	N/A	no	0.899	0.754	0.581	1e-125
Q9ST03	551	Nicotianamine aminotransf	N/A	no	0.896	0.629	0.582	1e-124
Q9SIV0	462	S-alkyl-thiohydroximate l	no	no	0.917	0.768	0.549	1e-123
Q67Y55	449	Probable aminotransferase	no	no	0.925	0.797	0.547	1e-117
Q9SK47	445	Probable aminotransferase	no	no	0.888	0.773	0.510	1e-106
Q8VYP2	424	Probable aminotransferase	no	no	0.919	0.839	0.497	1e-103
Q9SUR6	422	Cystine lyase CORI3 OS=Ar	no	no	0.958	0.879	0.474	1e-103
Q8QZR1	454	Tyrosine aminotransferase	yes	no	0.917	0.781	0.393	1e-73

>sp|Q9FN30|TAT2_ARATH Probable aminotransferase TAT2 OS=Arabidopsis thaliana GN=At5g53970 PE=2 SV=1

 Score =  484 bits (1247), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 224/370 (60%), Positives = 291/370 (78%), Gaps = 2/370 (0%)

Query: 18  PLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVY 77
           P   S    + V+  AV D+L +  ++ YSPT+G+P ARR IA+YL+RDLPYKLS +DV+
Sbjct: 43  PTLYSCFRTTQVSLQAVSDSLLSNKFHGYSPTVGLPQARRAIAEYLSRDLPYKLSQDDVF 102

Query: 78  LTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVD 137
           +T GC+QAI+++LS+LARP ANIL+PRPG+P+YE+ A     +LE R+ DLLPE  WE+D
Sbjct: 103 ITSGCTQAIDVALSMLARPRANILLPRPGFPIYELCA--KFRHLEVRYVDLLPENGWEID 160

Query: 138 LDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS 197
           LD VEALADENTVA+V+INPGNPCGNV+SYQHL KIA +A+ LG +VIADEVY HLAFGS
Sbjct: 161 LDAVEALADENTVALVVINPGNPCGNVYSYQHLMKIAESAKKLGFLVIADEVYGHLAFGS 220

Query: 198 TPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAA 257
            P+VPMGVFGSIVPV+TLGS+SKRWIVPGWRLGW VT+DP+G  ++   ++  K   +  
Sbjct: 221 KPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFKDPKIIERFKKYFDIL 280

Query: 258 SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVM 317
             P TFIQAAVP I+++T+E+FF K +  LK ++DIC + IKEIPCI    +P+G+M +M
Sbjct: 281 GGPATFIQAAVPTILEQTDESFFKKTLNSLKNSSDICCDWIKEIPCIDSSHRPEGSMAMM 340

Query: 318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIK 377
           VKLN+S+LED+ DD++FC KLA+EESVI+LPG  VG+KNWLRI FAA+  ++E+  +RIK
Sbjct: 341 VKLNLSLLEDVSDDIDFCFKLAREESVILLPGTAVGLKNWLRITFAADATSIEEAFKRIK 400

Query: 378 AFCQRHAKKQ 387
            F  RHAK Q
Sbjct: 401 CFYLRHAKTQ 410

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: -

>sp|Q9LVY1|TAT_ARATH Tyrosine aminotransferase OS=Arabidopsis thaliana GN=TAT PE=2 SV=1

 Score =  468 bits (1204), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 222/376 (59%), Positives = 283/376 (75%), Gaps = 9/376 (2%)

Query: 12  SPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKL 71
           SP+P      S  +D    E A+ DA+R+  +N YS + GVP AR+ +A+YL+ DL Y++
Sbjct: 53  SPFP------SFRTDQAAVE-AICDAVRSTKFNNYSSSSGVPVARKAVAEYLSSDLSYQI 105

Query: 72  SPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPE 131
           SP DV++T GC QAIEI +S LA PGANIL+PRP YP+Y+  AA     LE R++DLLPE
Sbjct: 106 SPNDVHITAGCVQAIEILISALAIPGANILLPRPTYPMYDSRAAFCQ--LEVRYFDLLPE 163

Query: 132 KRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYN 191
             W+VDLDGVEALAD+ TVAI++INP NPCGNVFS QHLQKIA TA  LGI+VIADEVY+
Sbjct: 164 NGWDVDLDGVEALADDKTVAILVINPCNPCGNVFSRQHLQKIAETACKLGILVIADEVYD 223

Query: 192 HLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIK 251
           H AFG  P+V M  F  +VPVI LG+ISKRW VPGWRLGW+VT DP+GI+++SGFV ++ 
Sbjct: 224 HFAFGDKPFVSMAEFAELVPVIVLGAISKRWFVPGWRLGWMVTLDPHGIMKDSGFVQTLI 283

Query: 252 GCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ 311
             +N ++ P TFIQ A+P I+  T E FF+  + ++K+ A+ICYE + +IPCITCP KP+
Sbjct: 284 NVVNMSTDPATFIQGAMPDIIGNTKEEFFSSKLEMVKKCAEICYEELMKIPCITCPCKPE 343

Query: 312 GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLED 371
           G+MF MVKLN S+LEDI DDL+FC KLAKEES+IILPG+ VG+KNWLRI FA E   L +
Sbjct: 344 GSMFTMVKLNFSLLEDISDDLDFCSKLAKEESMIILPGQAVGLKNWLRITFAVELELLIE 403

Query: 372 GLERIKAFCQRHAKKQ 387
           G  R+K F +RH+K Q
Sbjct: 404 GFSRLKNFTERHSKNQ 419

Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate. Can catalyze the reverse reaction, using L-glutamate in vitro. Can convert phenylalanine to phenylpyruvate and catalyze the reverse reaction in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 5

>sp|Q9ST02|NAATA_HORVU Nicotianamine aminotransferase A OS=Hordeum vulgare GN=naat-A PE=1 SV=2

 Score =  449 bits (1154), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 204/351 (58%), Positives = 273/351 (77%), Gaps = 3/351 (0%)

Query: 38  LRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR-P 96
           LRT  +NCY+  +G+P+AR  +A++L++ +PYKLS +DV+LT G +QAIE+ + VLA+  
Sbjct: 108 LRTGQFNCYAAGVGLPAARSAVAEHLSQGVPYKLSADDVFLTAGGTQAIEVIIPVLAQTA 167

Query: 97  GANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIIN 156
           GANIL+PRPGYP YE  AA   N LE RH+DL+P+K WE+D+D +E++AD+NT A+VIIN
Sbjct: 168 GANILLPRPGYPNYEARAA--FNKLEVRHFDLIPDKGWEIDIDSLESIADKNTTAMVIIN 225

Query: 157 PGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLG 216
           P NPCG+V+SY HL K+A  AR LGI+VIADEVY  L  GS P++PMGVFG I PV+++G
Sbjct: 226 PNNPCGSVYSYDHLAKVAEVARKLGILVIADEVYGKLVLGSAPFIPMGVFGHIAPVLSIG 285

Query: 217 SISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETN 276
           S+SK WIVPGWRLGW+   DP  IL+ +    SI   LN ++ P TF+Q A+P+I++ T 
Sbjct: 286 SLSKSWIVPGWRLGWVAVYDPTKILEKTKISTSITNYLNVSTDPATFVQEALPKILENTK 345

Query: 277 EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCL 336
             FF +IIGLLKE+++ICY  IKE   ITCP KP+G+MFVMVKLN+ +LE+I DD++FC 
Sbjct: 346 ADFFKRIIGLLKESSEICYREIKENKYITCPHKPEGSMFVMVKLNLHLLEEIHDDIDFCC 405

Query: 337 KLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAKKQ 387
           KLAKEESVI+ PG  +GM+NW+RI FA  P++L+DGLER+K+FCQR+ KK 
Sbjct: 406 KLAKEESVILCPGSVLGMENWVRITFACVPSSLQDGLERVKSFCQRNKKKN 456

Involved in biosynthesis of mugineic acid family phytosiderophores.

Hordeum vulgare (taxid: 4513)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 8

EC: 0

>sp|Q9ST03|NAATB_HORVU Nicotianamine aminotransferase B OS=Hordeum vulgare GN=naat-B PE=1 SV=2

 Score =  446 bits (1147), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 204/350 (58%), Positives = 271/350 (77%), Gaps = 3/350 (0%)

Query: 39  RTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR-PG 97
           RT  +NCY   +G+P+AR  +A++L++ +PY LS +DV+LT G +QAIE+ + VLA+  G
Sbjct: 199 RTGQFNCYPAGVGLPAARSAVAEHLSQGVPYMLSADDVFLTAGGTQAIEVIIPVLAQTAG 258

Query: 98  ANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINP 157
           ANIL+PRPGYP YE  AA   N LE RH+DL+P+K WE+D+D +E++AD+NT A+VIINP
Sbjct: 259 ANILLPRPGYPNYEARAA--FNRLEVRHFDLIPDKGWEIDIDSLESIADKNTTAMVIINP 316

Query: 158 GNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGS 217
            NPCG+V+SY HL K+A  A+ LGI+VIADEVY  L  GS P++PMGVFG I PV+++GS
Sbjct: 317 NNPCGSVYSYDHLSKVAEVAKRLGILVIADEVYGKLVLGSAPFIPMGVFGHITPVLSIGS 376

Query: 218 ISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNE 277
           +SK WIVPGWRLGW+   DP  ILQ +    SI   LN ++ P TFIQAA+P+I++ T E
Sbjct: 377 LSKSWIVPGWRLGWVAVYDPRKILQETKISTSITNYLNVSTDPATFIQAALPQILENTKE 436

Query: 278 AFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLK 337
            FF  IIGLLKE+++ICY++IKE   ITCP KP+G+MFVMVKLN+ +LE+I DD++FC K
Sbjct: 437 DFFKAIIGLLKESSEICYKQIKENKYITCPHKPEGSMFVMVKLNLHLLEEIDDDIDFCCK 496

Query: 338 LAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAKKQ 387
           LAKEESVI+ PG  +GM NW+RI FA  P++L+DGL RIK+FCQR+ K+ 
Sbjct: 497 LAKEESVILCPGSVLGMANWVRITFACVPSSLQDGLGRIKSFCQRNKKRN 546

Involved in biosynthesis of mugineic acid family phytosiderophores.

Hordeum vulgare (taxid: 4513)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 8

EC: 0

>sp|Q9SIV0|SUR1_ARATH S-alkyl-thiohydroximate lyase SUR1 OS=Arabidopsis thaliana GN=SUR1 PE=1 SV=1

 Score =  441 bits (1134), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 196/357 (54%), Positives = 266/357 (74%), Gaps = 2/357 (0%)

Query: 30  AEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEIS 89
           AEDAVVD LR+   N Y P  G+  ARR +ADY+NRDLP+KL+PED++LT GC+Q IEI 
Sbjct: 88  AEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIV 147

Query: 90  LSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENT 149
              LARP ANIL+PRPG+P Y+  AA S   LE R +DLLPEK WE+DL+G+EA+ADENT
Sbjct: 148 FESLARPNANILLPRPGFPHYDARAAYSG--LEVRKFDLLPEKEWEIDLEGIEAIADENT 205

Query: 150 VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSI 209
           VA+V+INP NPCGNV+S+ HL+K+A TAR LGI+VI+DEVY+   FG  P+V MG F SI
Sbjct: 206 VAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASI 265

Query: 210 VPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVP 269
           VPV+TL  ISK W+VPGW++GW+  +DP G+ + +  + SIK  L+    P T IQAA+P
Sbjct: 266 VPVLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALP 325

Query: 270 RIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIG 329
            I+++ ++ FFAK   +LK   D+  +R+K+IPC+ CP KP+   +++ KL +S++++I 
Sbjct: 326 AILEKADKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKPESCTYLLTKLELSLMDNIK 385

Query: 330 DDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAKK 386
           DD++FC+KLA+EE+++ LPG  +G+KNW+RI    E   LED LER+K FC RHAKK
Sbjct: 386 DDIDFCVKLAREENLVFLPGDALGLKNWMRITIGVEAHMLEDALERLKGFCTRHAKK 442

C-S lyase involved in glucosinolate biosynthesis. Converts S-(alkylacetohydroximoyl)-L-cysteine to thiohydroximate. Functions in auxin homeostasis. Probably required for glucosinolate activation in response to pathogens.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q67Y55|TAT1_ARATH Probable aminotransferase TAT1 OS=Arabidopsis thaliana GN=At4g28420 PE=2 SV=1

 Score =  421 bits (1083), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 197/360 (54%), Positives = 260/360 (72%), Gaps = 2/360 (0%)

Query: 27  STVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI 86
           S + E+AVVD LR+   N Y P  G+  AR+ +ADY+NRDL  K+ P DV++T+GC+Q I
Sbjct: 79  SILVENAVVDVLRSGKGNSYGPAAGILPARQAVADYVNRDLTNKVKPNDVFITVGCNQGI 138

Query: 87  EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD 146
           E+ L  LARP ANIL+PRP YP YE  A  S   LE R +DLLPEK WE+DL G+EA+AD
Sbjct: 139 EVVLQSLARPNANILLPRPSYPHYEARAVYSG--LEVRKFDLLPEKEWEIDLPGIEAMAD 196

Query: 147 ENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF 206
           ENTVA+VIINP NPCGNV+SY HL+K+A TA+ LGI+VI DEVY    FG  P+VPMG F
Sbjct: 197 ENTVAMVIINPNNPCGNVYSYDHLKKVAETAKKLGIMVITDEVYCQTIFGDKPFVPMGEF 256

Query: 207 GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQA 266
            SI PVITLG ISK WIVPGWR+GW+  +DP GIL+++G V SI+  L+      T +QA
Sbjct: 257 SSITPVITLGGISKGWIVPGWRIGWIALNDPRGILKSTGMVQSIQQNLDITPDATTIVQA 316

Query: 267 AVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE 326
           A+P I+ + N+  FAK   +LK+  ++  +R+KEIPC+ C  KP+   +++ KL + +LE
Sbjct: 317 ALPEILGKANKELFAKKNSMLKQNVELVCDRLKEIPCLVCNKKPESCTYLLTKLKLPLLE 376

Query: 327 DIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAKK 386
           DI DD++FC+KLAKEE++++LPG  +G+KNW+RI    E   LED LER+  FC+RH KK
Sbjct: 377 DIEDDMDFCMKLAKEENLVLLPGVALGLKNWIRITIGVEAQMLEDALERLNGFCKRHLKK 436

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SK47|TAT3_ARATH Probable aminotransferase TAT3 OS=Arabidopsis thaliana GN=TAT3 PE=2 SV=1

 Score =  385 bits (988), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 177/347 (51%), Positives = 247/347 (71%), Gaps = 3/347 (0%)

Query: 39  RTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA-RPG 97
           R+   N Y+P+ GV  ARR +A+YLN +LP KL  EDVY+T GC+QAIEI +  LA  P 
Sbjct: 80  RSGMANSYAPSPGVFKARRAVAEYLNGELPTKLKAEDVYITGGCNQAIEIVIDSLAGNPS 139

Query: 98  ANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINP 157
           ANIL+PRPGYP Y+  A  S   LE R YDLLPE  WE++LDG+EA ADENTVA+VIINP
Sbjct: 140 ANILLPRPGYPHYDARAVYSG--LEIRKYDLLPESDWEINLDGLEAAADENTVAMVIINP 197

Query: 158 GNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGS 217
            NPCGNV++Y HL K+A  AR LGI++I+DEVY+H+ +G  P++PMG F SI PVITLGS
Sbjct: 198 NNPCGNVYTYDHLNKVAEMARKLGIMIISDEVYDHVVYGDKPFIPMGKFASIAPVITLGS 257

Query: 218 ISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNE 277
           ISK W+ PGWR+GW+  +DPNGI  ++G V +I+  L+    P   +Q A+P I+++T +
Sbjct: 258 ISKGWVNPGWRVGWIAMNDPNGIFVSTGVVQAIEDFLDLTPQPSFILQEALPDILEKTPK 317

Query: 278 AFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLK 337
            FF K I  ++   ++  ER+K+IPC+ CP KP+   ++ +KL+ SML +I +D +FC K
Sbjct: 318 EFFEKKIKAMRRNVELSCERLKDIPCLFCPKKPESCSYLWLKLDTSMLNNIKNDFDFCTK 377

Query: 338 LAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHA 384
           L  EES+I++PG  +G +NW+RI+   + + +++  +R+K F  RHA
Sbjct: 378 LVSEESLILIPGVALGAENWVRISIGTDESVVQEIFDRLKGFYDRHA 424

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q8VYP2|TAT4_ARATH Probable aminotransferase TAT4 OS=Arabidopsis thaliana GN=At4g23590 PE=2 SV=1

 Score =  375 bits (963), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/358 (49%), Positives = 245/358 (68%), Gaps = 2/358 (0%)

Query: 27  STVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI 86
           S  AE AVV A+     N Y+P++G+P A+R +A+YLNRDL  KL+ +DVY+T+GC QAI
Sbjct: 54  SHTAEKAVVKAVLCGTGNAYAPSIGLPVAKRAVAEYLNRDLDNKLTGDDVYMTVGCKQAI 113

Query: 87  EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD 146
           E+++S+LA+P ANIL+PRPG+P   +H+     +LE R Y+ +PE+ +E+D + V  + D
Sbjct: 114 ELAVSILAKPKANILLPRPGFPWDMVHSI--YKHLEVRRYEFIPERDFEIDFNSVREMVD 171

Query: 147 ENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF 206
           ENT AI IINP NP GN ++  HL+++A  AR LGI+V++DEVY    FGS P+VPMG F
Sbjct: 172 ENTFAIFIINPHNPNGNYYTEAHLKQLATLARELGIMVVSDEVYRWSVFGSNPFVPMGKF 231

Query: 207 GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQA 266
            SIVPVITLGSISK WIVPGWR GWL   D NG+ +++  + + K  L   S P T IQA
Sbjct: 232 SSIVPVITLGSISKGWIVPGWRTGWLALHDLNGVFRSTKVLKAAKEFLEITSKPPTVIQA 291

Query: 267 AVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE 326
           A+P I+++T + FF K    LK+  D  Y ++K IP +TC +KP+   F+  KL+     
Sbjct: 292 AIPTILEKTPQDFFEKRGIFLKDKVDFGYSKLKNIPTLTCYMKPESCTFLWTKLDPLHFV 351

Query: 327 DIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHA 384
           DI DD +FC KLAKEE++++LPG   G  NWLR +   E   LED  ER+K+FC+RH+
Sbjct: 352 DIEDDHDFCRKLAKEENLVVLPGIAFGQNNWLRHSIDMETPRLEDAFERLKSFCERHS 409

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SUR6|CORI3_ARATH Cystine lyase CORI3 OS=Arabidopsis thaliana GN=CORI3 PE=1 SV=1

 Score =  374 bits (959), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/373 (47%), Positives = 250/373 (67%), Gaps = 2/373 (0%)

Query: 15  PRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE 74
           P  P    +L  S  AE AVV A+     N Y+P+LG+ +A+  +A+YLN+ LP KL+ +
Sbjct: 42  PILPPRNEILETSNTAEKAVVKAVLYGSGNAYAPSLGLAAAKSAVAEYLNQGLPKKLTAD 101

Query: 75  DVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRW 134
           DV++TLGC QAIE+++ +LA+P AN+L+P PG+P   + +     NLE RHY+ LPEK +
Sbjct: 102 DVFMTLGCKQAIELAVDILAKPKANVLLPSPGFPWDLVRSI--YKNLEVRHYNFLPEKNF 159

Query: 135 EVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLA 194
           E+D D V AL DENT AI IINP NP GN +S  HL+++A  A+ L I+V++DEV+    
Sbjct: 160 EIDFDSVRALVDENTFAIFIINPHNPNGNTYSEAHLKQLAELAKELKIMVVSDEVFRWTL 219

Query: 195 FGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL 254
           FGS P+VPMG F SIVPV+TLGSISK W VPGWR GWL   D +G+ +N+  + + +  L
Sbjct: 220 FGSNPFVPMGKFSSIVPVVTLGSISKGWKVPGWRTGWLTLHDLDGVFRNTKVLQAAQDFL 279

Query: 255 NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAM 314
              ++P T IQAA+P I+++T + FF K    LK+  +  Y ++K IP +TC +KP+   
Sbjct: 280 QINNNPPTVIQAAIPDILEKTPQEFFDKRQSFLKDKVEFGYSKLKYIPSLTCYMKPEACT 339

Query: 315 FVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLE 374
           F+  +L++S   DI DD +FC KLAKEE++++LPG     KNWLR +   E   LED LE
Sbjct: 340 FLWTELDLSSFVDIEDDQDFCNKLAKEENLVVLPGIAFSQKNWLRHSIDMETPVLEDALE 399

Query: 375 RIKAFCQRHAKKQ 387
           R+K+FC RH+ K+
Sbjct: 400 RLKSFCDRHSNKK 412

Possesses cystine lyase and tyrosine aminotransferase activities in vitro. May be required for the synthesis of homogentisate a precursor of tocopherols and plastoquinones.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q8QZR1|ATTY_MOUSE Tyrosine aminotransferase OS=Mus musculus GN=Tat PE=1 SV=1

 Score =  276 bits (707), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 143/363 (39%), Positives = 211/363 (58%), Gaps = 8/363 (2%)

Query: 22  SLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLN-RDLPYKLSPEDVYLTL 80
           +L +D  V + A+ DAL +  YN Y+P++G  S+R  +A Y +  + P  L  +DV LT 
Sbjct: 86  NLPTDPEVTQ-AMKDALDSGKYNGYAPSIGYLSSREEVASYYHCPEAP--LEAKDVILTS 142

Query: 81  GCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDG 140
           GCSQAIE+ L+VLA PG NILIPRPG+ LY   A   +  +E + Y+LLPEK WE+DL  
Sbjct: 143 GCSQAIELCLAVLANPGQNILIPRPGFSLYRTLA--ESMGIEVKLYNLLPEKSWEIDLKQ 200

Query: 141 VEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPY 200
           +E+L DE T  +V+ NP NPCG+VFS +HLQKI   A    + ++ADE+Y  + F    Y
Sbjct: 201 LESLIDEKTACLVVNNPSNPCGSVFSKRHLQKILAVAERQCVPILADEIYGDMVFSDCKY 260

Query: 201 VPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHP 260
            PM    + VP+++ G ++KRW+VPGWRLGW++  D   I  N    D +         P
Sbjct: 261 EPMATLSTNVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNE-IRDGLVKLSQRILGP 319

Query: 261 VTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKL 320
            T +Q A+  I+  T + F+   +  LK  AD+CY  +  IP +  PV+P GAM++MV +
Sbjct: 320 CTIVQGALKSILQRTPQEFYQDTLSFLKSNADLCYGALSAIPGLQ-PVRPSGAMYLMVGI 378

Query: 321 NVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFC 380
            +    +  +D+EF  +L  E+SV  LP       N+ R+        + +   RI+ FC
Sbjct: 379 EMEHFPEFENDVEFTERLIAEQSVHCLPATCFEYPNFFRVVITVPEVMMLEACSRIQEFC 438

Query: 381 QRH 383
           ++H
Sbjct: 439 EQH 441

Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate. Can catalyze the reverse reaction, using glutamic acid, with 2-oxoglutarate as cosubstrate (in vitro). Has no transaminase activity towards phenylalanine.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	387
224133454	418	aminotransferase family protein [Populus	0.950	0.880	0.729	1e-161
225446431	419	PREDICTED: tyrosine aminotransferase [Vi	0.950	0.878	0.705	1e-153
359485208	419	PREDICTED: LOW QUALITY PROTEIN: tyrosine	0.950	0.878	0.686	1e-152
225446437	419	PREDICTED: tyrosine aminotransferase [Vi	0.950	0.878	0.675	1e-152
355754553	386	PLP-dependent aminotransferase [Papaver	0.948	0.950	0.677	1e-152
255553657	419	tyrosine aminotransferase, putative [Ric	0.927	0.856	0.703	1e-151
224133450	417	aminotransferase family protein [Populus	0.948	0.880	0.672	1e-151
147844187	424	hypothetical protein VITISV_034250 [Viti	0.950	0.867	0.693	1e-151
225446435	419	PREDICTED: tyrosine aminotransferase iso	0.950	0.878	0.689	1e-149
302143330	518	unnamed protein product [Vitis vinifera]	0.950	0.710	0.689	1e-149

>gi|224133454|ref|XP_002328046.1| aminotransferase family protein [Populus trichocarpa] gi|222837455|gb|EEE75834.1| aminotransferase family protein [Populus trichocarpa]

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 270/370 (72%), Positives = 321/370 (86%), Gaps = 2/370 (0%)

Query: 18  PLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVY 77
           P        +TVA++AVVDA+R+A YN Y+PT+G+  ARR +AD+LNRDLPYKLSP+DV+
Sbjct: 51  PSAFPCFRTTTVADEAVVDAVRSAKYNHYAPTVGLLPARRSVADFLNRDLPYKLSPDDVF 110

Query: 78  LTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVD 137
           LTLGC+QAIEI+++VLARPGANIL+PRPG+P YE  AA S+  LEARH+DL+PEK WEVD
Sbjct: 111 LTLGCTQAIEITITVLARPGANILLPRPGFPYYEARAAHSH--LEARHFDLIPEKGWEVD 168

Query: 138 LDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS 197
           LD VEALADENTVA+V+INPGNPCG+V+SYQHLQKIA TAR LGI+VIADEVY HL FG+
Sbjct: 169 LDAVEALADENTVAMVVINPGNPCGSVYSYQHLQKIAETARKLGIMVIADEVYGHLTFGN 228

Query: 198 TPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAA 257
           +P+VPMGVFGSIVPV+TLGSISKRWIVPGWR+GWLVTSDPNGILQ SG V+SIKGCLN +
Sbjct: 229 SPFVPMGVFGSIVPVLTLGSISKRWIVPGWRIGWLVTSDPNGILQESGVVESIKGCLNIS 288

Query: 258 SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVM 317
           S PVTFIQ A+P+I+D T E FF KI  +L+E ADICYE+I++IPCIT P KP+G+MFVM
Sbjct: 289 SDPVTFIQGAIPQIIDNTTEDFFTKINNILREAADICYEKIQDIPCITLPHKPEGSMFVM 348

Query: 318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIK 377
           VKLN+S LE IGDD++FCLKLAKEESV+ILPG  VGMKN+LRI FA EP+ LE GLER+K
Sbjct: 349 VKLNLSSLEGIGDDMDFCLKLAKEESVMILPGTAVGMKNFLRITFAIEPSALEVGLERLK 408

Query: 378 AFCQRHAKKQ 387
           AF +RHAK Q
Sbjct: 409 AFYERHAKIQ 418

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446431|ref|XP_002275047.1| PREDICTED: tyrosine aminotransferase [Vitis vinifera] gi|302143327|emb|CBI21888.3| unnamed protein product [Vitis vinifera]

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 261/370 (70%), Positives = 312/370 (84%), Gaps = 2/370 (0%)

Query: 18  PLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVY 77
           P   S    S  AE+A+VDA+R+  +N YSP +GV +ARR IA+YL+ DLPYKLSP+DVY
Sbjct: 52  PSAFSSFRTSPEAEEAIVDAVRSRKFNSYSPDVGVLTARRAIAEYLSADLPYKLSPDDVY 111

Query: 78  LTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVD 137
           LT+GC+QAI++ + VLA PGANIL+PRPGY LYE HAA   N+LE R +DLLPEK WEVD
Sbjct: 112 LTIGCAQAIKLIIKVLALPGANILLPRPGYALYEAHAAA--NHLEFRRFDLLPEKGWEVD 169

Query: 138 LDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS 197
           L+GV+ALADENTVA+VIINPGNPCGNVF++QHL+K+A TAR LGI+VIADEVY HL FGS
Sbjct: 170 LEGVKALADENTVAMVIINPGNPCGNVFTHQHLKKVAETARMLGILVIADEVYGHLVFGS 229

Query: 198 TPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAA 257
            PYVPMGVFGSI PVITLGSISKRWIVPGWRLGWLVT+DPNGIL  SG V++I   LN  
Sbjct: 230 NPYVPMGVFGSITPVITLGSISKRWIVPGWRLGWLVTNDPNGILCKSGVVETIVSSLNIC 289

Query: 258 SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVM 317
           + P TFI  AVP+I+++T + FF++IIGLL++TADIC++ + +IPCITCP KP+GAM VM
Sbjct: 290 TDPATFIHGAVPQIIEKTTDDFFSRIIGLLRKTADICFDGLADIPCITCPHKPEGAMSVM 349

Query: 318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIK 377
           V LNVS+LEDI DD++FC+KL+KEESVIILPG TVGM+NWLRI FA EP +LEDGL RIK
Sbjct: 350 VNLNVSLLEDIEDDMDFCVKLSKEESVIILPGFTVGMENWLRITFATEPPSLEDGLGRIK 409

Query: 378 AFCQRHAKKQ 387
           AFCQRHAKKQ
Sbjct: 410 AFCQRHAKKQ 419

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485208|ref|XP_003633232.1| PREDICTED: LOW QUALITY PROTEIN: tyrosine aminotransferase-like [Vitis vinifera]

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 254/370 (68%), Positives = 310/370 (83%), Gaps = 2/370 (0%)

Query: 18  PLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVY 77
           P   S    + VAEDA+VDALR+  +N Y+P +G+  ARR IA++L+ DLPYKLSP+D++
Sbjct: 52  PSAFSCFRTTPVAEDAIVDALRSRKFNSYAPAVGILPARRAIAEHLSHDLPYKLSPDDIF 111

Query: 78  LTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVD 137
           LT+GCSQAIE+ + VLARPGANIL+PRPGYP YE HAA   N+LE RH+DLLPEK WEVD
Sbjct: 112 LTIGCSQAIELIIKVLARPGANILLPRPGYPFYESHAAA--NHLEFRHFDLLPEKGWEVD 169

Query: 138 LDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS 197
           L+GV+ALADENTVA+VIINPGNPCGN+F+++HL+K+A TAR LGI+VI+DEVY HLAFG 
Sbjct: 170 LEGVKALADENTVAMVIINPGNPCGNIFTHEHLKKVAETARMLGILVISDEVYAHLAFGG 229

Query: 198 TPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAA 257
            PYV MG FGSI PVITLGSISKRWIVPGWRLGWLVT+DPNGIL  SG V+SI   LN +
Sbjct: 230 NPYVSMGAFGSITPVITLGSISKRWIVPGWRLGWLVTNDPNGILHKSGVVESIVSSLNIS 289

Query: 258 SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVM 317
           S P TFIQ AVP+I+++T + F+ KII +L+ETA  C++ I++IPC+TCP KP+G+MFVM
Sbjct: 290 SDPATFIQGAVPQIIEKTTDDFYLKIISILRETAGTCFDGIEDIPCLTCPHKPEGSMFVM 349

Query: 318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIK 377
           VKLN+S+LEDI DD++FC+KL+KEESVI+ PG  VGMKNWLRI FA EP +LEDGL RIK
Sbjct: 350 VKLNLSLLEDIEDDIDFCMKLSKEESVIVFPGFAVGMKNWLRITFAIEPPSLEDGLGRIK 409

Query: 378 AFCQRHAKKQ 387
           AF QRHAKKQ
Sbjct: 410 AFYQRHAKKQ 419

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446437|ref|XP_002276551.1| PREDICTED: tyrosine aminotransferase [Vitis vinifera] gi|302143331|emb|CBI21892.3| unnamed protein product [Vitis vinifera]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 250/370 (67%), Positives = 313/370 (84%), Gaps = 2/370 (0%)

Query: 18  PLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVY 77
           P        + VAEDA+ DA+R+A +N Y+PT+G+  ARR +A+YL+RDLPY+LSP+D+Y
Sbjct: 52  PSAFPCFRTTPVAEDAIADAVRSAKFNSYAPTVGLLPARRAVAEYLSRDLPYQLSPDDIY 111

Query: 78  LTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVD 137
           LT+GC+QAIEI + VLARPGANIL+PRPG+P YE  AA   +NLE RH+DLLPE+ WEVD
Sbjct: 112 LTIGCTQAIEIMIQVLARPGANILLPRPGFPYYEARAAA--DNLEVRHFDLLPEQGWEVD 169

Query: 138 LDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS 197
           L+ V+ALADENTVA+VI+NPGNP G+VF+Y+HL+K+A TARNLGI+VI+DEVY HLAFGS
Sbjct: 170 LEAVKALADENTVAMVIVNPGNPSGSVFTYEHLKKVAETARNLGIMVISDEVYGHLAFGS 229

Query: 198 TPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAA 257
            P+VPMGVFGSIVP++T+GSISKRW+VPGWRLGWLVT+D NGIL  SG V+SI  CLN +
Sbjct: 230 KPFVPMGVFGSIVPIVTVGSISKRWVVPGWRLGWLVTNDLNGILHKSGVVESIISCLNIS 289

Query: 258 SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVM 317
           S P TFIQ A+P I+++T E FF+  I +L+E ADI ++RIK IPCITCP KP+G+MFVM
Sbjct: 290 SDPATFIQGAIPEILEKTKEDFFSNTISILRECADIIHDRIKGIPCITCPQKPEGSMFVM 349

Query: 318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIK 377
           VKLN+S+LEDI DD+EFC+KL+KEESVI+LPG +VGMKNWLR+ FA +P +LEDGL RIK
Sbjct: 350 VKLNLSLLEDIDDDVEFCMKLSKEESVIVLPGVSVGMKNWLRVTFAIDPPSLEDGLGRIK 409

Query: 378 AFCQRHAKKQ 387
           AF QRHAKK+
Sbjct: 410 AFYQRHAKKE 419

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|355754553|gb|AET06144.1| PLP-dependent aminotransferase [Papaver somniferum]

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 250/369 (67%), Positives = 309/369 (83%), Gaps = 2/369 (0%)

Query: 18  PLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVY 77
           P        + +AEDA+VD+LR+A +N YSPT+G+  ARR IADYL+RDLPYKLSP+DV+
Sbjct: 20  PSAFPCFRTTQIAEDAIVDSLRSAKFNGYSPTVGILPARRSIADYLSRDLPYKLSPDDVF 79

Query: 78  LTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVD 137
           LT+GC+QAIEI++ V A PGANIL+PRPG+P YE  A     NLE RH+DLLPEK WEVD
Sbjct: 80  LTIGCTQAIEIAMMVFACPGANILLPRPGFPYYE--ACAGFRNLEYRHFDLLPEKGWEVD 137

Query: 138 LDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS 197
           L+ VEALADENTV +VIINPGNPCG+V++Y+HL+KIA TA+ LGI+VI+DEVY HL F S
Sbjct: 138 LEAVEALADENTVGMVIINPGNPCGSVYTYEHLKKIAETAKKLGILVISDEVYGHLTFAS 197

Query: 198 TPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAA 257
            P+VPMGVFGSIVPV+TLGSISKRWIVPGWRLGWLVTSDPNGIL+ +  VDSI  CLN +
Sbjct: 198 NPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILKETKVVDSIISCLNIS 257

Query: 258 SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVM 317
             P TFIQAA+P+I+++T + FF+K+I +L+++A+I Y++IKEI CITCP KP+G+MFVM
Sbjct: 258 GDPATFIQAAIPQIIEKTTDDFFSKVITILRKSAEIIYDQIKEIDCITCPHKPEGSMFVM 317

Query: 318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIK 377
           VK N +++EDI DD+EFC KLAKEES+IILPG  VGMKNWLRI FA EP +L+DGL R+K
Sbjct: 318 VKFNSTLMEDIKDDMEFCFKLAKEESLIILPGTAVGMKNWLRITFAVEPTSLQDGLLRLK 377

Query: 378 AFCQRHAKK 386
           AFCQR+AKK
Sbjct: 378 AFCQRYAKK 386

Source: Papaver somniferum

Species: Papaver somniferum

Genus: Papaver

Family: Papaveraceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553657|ref|XP_002517869.1| tyrosine aminotransferase, putative [Ricinus communis] gi|223542851|gb|EEF44387.1| tyrosine aminotransferase, putative [Ricinus communis]

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 254/361 (70%), Positives = 306/361 (84%), Gaps = 2/361 (0%)

Query: 27  STVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI 86
           ++ AEDA+VDAL++A YNCYSPT+G+  ARR IADYLN DLPY+LSP+DV++TLGC+QAI
Sbjct: 61  ASAAEDAIVDALKSAKYNCYSPTVGLLPARRAIADYLNIDLPYELSPDDVFVTLGCTQAI 120

Query: 87  EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD 146
           E+SL+VL RPGANIL+PRPG+P Y   AA    +LE RH+DLLPEK WEV+ + VEALAD
Sbjct: 121 EVSLTVLGRPGANILLPRPGFPYYTGIAA--QTHLEVRHFDLLPEKGWEVNFEAVEALAD 178

Query: 147 ENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF 206
           ENT A+VIINPGNPCGNV+SY+HL+KIA TAR LGI+VIADEVY HL FGSTP+VPMGVF
Sbjct: 179 ENTAAMVIINPGNPCGNVYSYEHLKKIAETARKLGILVIADEVYAHLTFGSTPFVPMGVF 238

Query: 207 GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQA 266
           GS+VPV+TLGSISKRWIVPGWRLGWLV SDP GILQ +G VDSI  CLN +S P TFIQ 
Sbjct: 239 GSVVPVLTLGSISKRWIVPGWRLGWLVLSDPKGILQETGVVDSITSCLNISSDPATFIQG 298

Query: 267 AVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE 326
           A+P+I+  T + FF KI  LL+E A++CY+RI++IPCITC  KP+G+MF+M KLN+S L+
Sbjct: 299 AIPQILTNTKKDFFFKINNLLQEAAELCYDRIQDIPCITCLRKPEGSMFLMAKLNLSSLK 358

Query: 327 DIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAKK 386
            I DD++FCLKLAKEESVI+LPG TVG+KNWLRI FA E +TLE GL RI+AF +RHAKK
Sbjct: 359 GIEDDMDFCLKLAKEESVIVLPGITVGLKNWLRITFAIELSTLEVGLGRIRAFYERHAKK 418

Query: 387 Q 387
           Q
Sbjct: 419 Q 419

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133450|ref|XP_002328045.1| aminotransferase family protein [Populus trichocarpa] gi|222837454|gb|EEE75833.1| aminotransferase family protein [Populus trichocarpa]

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 248/369 (67%), Positives = 305/369 (82%), Gaps = 2/369 (0%)

Query: 18  PLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVY 77
           P   +    S  A DA+V A+++A +N Y+PT+G+  ARR +A+YL+ DLPY LS +D+Y
Sbjct: 51  PSAFACFRTSPEAVDAIVHAVQSAEFNSYAPTIGILPARRAVAEYLSADLPYNLSADDIY 110

Query: 78  LTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVD 137
           LT+GC+Q+IE+ LS LARPGANIL+PRPGYPLYE  A+ S   LE RH+DL+PEK WEVD
Sbjct: 111 LTVGCTQSIEVILSALARPGANILLPRPGYPLYESRASFSK--LEVRHFDLIPEKGWEVD 168

Query: 138 LDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS 197
           L+ VEALADENT AIVII+PGNPCGNVFSYQHL+K+A TAR LGI VIADEVY H+AFGS
Sbjct: 169 LESVEALADENTAAIVIISPGNPCGNVFSYQHLKKVAETARKLGIFVIADEVYGHIAFGS 228

Query: 198 TPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAA 257
            PYVPMG FGSIVPV++LGSISKRWIVPGWRLGW+ T DPNGIL+  G VDSIK   N +
Sbjct: 229 NPYVPMGEFGSIVPVLSLGSISKRWIVPGWRLGWIATCDPNGILKKYGIVDSIKSYFNIS 288

Query: 258 SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVM 317
           S+P TF+QAA+P+I ++T E FF+K I +++E ADICYE+ KEIPC+TCP KP G+MF M
Sbjct: 289 SNPATFVQAAIPQIFEKTKEDFFSKTINIMREAADICYEKTKEIPCVTCPHKPDGSMFAM 348

Query: 318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIK 377
           VKLN+S+LEDI DD++FCLKLA+EESVIILPG  VG+KNWLRI F+ EP +LE GL+R+K
Sbjct: 349 VKLNLSLLEDISDDMDFCLKLAREESVIILPGVAVGLKNWLRITFSIEPQSLEQGLDRMK 408

Query: 378 AFCQRHAKK 386
           AFCQRH++K
Sbjct: 409 AFCQRHSRK 417

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147844187|emb|CAN80557.1| hypothetical protein VITISV_034250 [Vitis vinifera]

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 260/375 (69%), Positives = 310/375 (82%), Gaps = 7/375 (1%)

Query: 18  PLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVY 77
           P   S    S  AE+A+VDA+R+  +N YSP +GV + RR IA+YL+ DLPYKLSP+DVY
Sbjct: 52  PSAFSSFRTSPEAEEAIVDAVRSRKFNSYSPDVGVLTXRRAIAEYLSADLPYKLSPDDVY 111

Query: 78  LTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVD 137
           LT+GC+QAI++ + VLA PGANIL+PRPGY LYE HAA   N+LE R +DLLPEK WEVD
Sbjct: 112 LTIGCAQAIKLIIKVLALPGANILLPRPGYALYEAHAAA--NHLEFRRFDLLPEKGWEVD 169

Query: 138 LDGVEALADENTVAIVIINPGNPCGNVFSYQHLQK-----IARTARNLGIIVIADEVYNH 192
           L+GV+ALADENTVA+VIINPGNPCGNVF++QHL+K     +A TAR LGI+VIADEVY H
Sbjct: 170 LEGVKALADENTVAMVIINPGNPCGNVFTHQHLKKLGILQVAETARMLGILVIADEVYGH 229

Query: 193 LAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKG 252
           L FGS PYVPMGVFGSI PVITLGSISKRWIVPGWRLGWLVT+DPNGIL  SG V++I  
Sbjct: 230 LVFGSNPYVPMGVFGSITPVITLGSISKRWIVPGWRLGWLVTNDPNGILCKSGVVETIVS 289

Query: 253 CLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQG 312
            LN  + P TFI  AVP+I+++T + FF++IIGLL++TADIC++ + +IPCITCP KP+G
Sbjct: 290 SLNICTDPATFIXGAVPQIIEKTTDDFFSRIIGLLRKTADICFDGLADIPCITCPHKPEG 349

Query: 313 AMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDG 372
           AM VMV LNVS+LEDI DD++FC+KL+KEESVIILPG TVGMKNWLRI FA E  +LEDG
Sbjct: 350 AMSVMVNLNVSLLEDIEDDMDFCVKLSKEESVIILPGFTVGMKNWLRITFATEXPSLEDG 409

Query: 373 LERIKAFCQRHAKKQ 387
           L RIKAFCQRHAKKQ
Sbjct: 410 LGRIKAFCQRHAKKQ 424

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446435|ref|XP_002276464.1| PREDICTED: tyrosine aminotransferase isoform 1 [Vitis vinifera]

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 255/370 (68%), Positives = 305/370 (82%), Gaps = 2/370 (0%)

Query: 18  PLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVY 77
           P   S    +  AE+A+VDA+R+  ++ Y P +GV  ARR IA+YL+ DLPYKLSP+DVY
Sbjct: 52  PSAFSCFRTAPEAEEAIVDAVRSREFDSYPPDVGVLPARRAIAEYLSTDLPYKLSPDDVY 111

Query: 78  LTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVD 137
           LT+GC QAIE+ + VLARPGANIL+PRPGY  YE  AA   N+LE R +DLLPEK WEVD
Sbjct: 112 LTVGCGQAIELIIKVLARPGANILLPRPGYAFYEALAAA--NHLEFRRFDLLPEKVWEVD 169

Query: 138 LDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS 197
           L+GV+ALADENTVA+VIINPGNPCGNVF++QHL+K+A TAR LGI+VIADEVY HL FGS
Sbjct: 170 LEGVKALADENTVAMVIINPGNPCGNVFTHQHLKKVAETARMLGILVIADEVYGHLVFGS 229

Query: 198 TPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAA 257
            P+VPMGVFGSI PVITLGSISKRWIVPGWRLGWLVT+DPNGIL  SG V++I   LN  
Sbjct: 230 NPFVPMGVFGSITPVITLGSISKRWIVPGWRLGWLVTNDPNGILCKSGIVETIVSYLNIC 289

Query: 258 SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVM 317
           + P +FIQ AVP+I+++T + FF++II LL +TADIC++ + +IPCITCP KP+GAM VM
Sbjct: 290 ADPTSFIQGAVPQIIEKTTDDFFSRIISLLGKTADICFDGLADIPCITCPHKPEGAMSVM 349

Query: 318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIK 377
           VKLNVS+LEDI DD++FC+KL+KEESVIIL G  VGMKNWLRI FA EP  LEDG+ RIK
Sbjct: 350 VKLNVSLLEDIDDDMDFCMKLSKEESVIILAGFAVGMKNWLRITFATEPPFLEDGIGRIK 409

Query: 378 AFCQRHAKKQ 387
           AFCQRHAKKQ
Sbjct: 410 AFCQRHAKKQ 419

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143330|emb|CBI21891.3| unnamed protein product [Vitis vinifera]

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 255/370 (68%), Positives = 305/370 (82%), Gaps = 2/370 (0%)

Query: 18  PLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVY 77
           P   S    +  AE+A+VDA+R+  ++ Y P +GV  ARR IA+YL+ DLPYKLSP+DVY
Sbjct: 151 PSAFSCFRTAPEAEEAIVDAVRSREFDSYPPDVGVLPARRAIAEYLSTDLPYKLSPDDVY 210

Query: 78  LTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVD 137
           LT+GC QAIE+ + VLARPGANIL+PRPGY  YE  AA   N+LE R +DLLPEK WEVD
Sbjct: 211 LTVGCGQAIELIIKVLARPGANILLPRPGYAFYEALAAA--NHLEFRRFDLLPEKVWEVD 268

Query: 138 LDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS 197
           L+GV+ALADENTVA+VIINPGNPCGNVF++QHL+K+A TAR LGI+VIADEVY HL FGS
Sbjct: 269 LEGVKALADENTVAMVIINPGNPCGNVFTHQHLKKVAETARMLGILVIADEVYGHLVFGS 328

Query: 198 TPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAA 257
            P+VPMGVFGSI PVITLGSISKRWIVPGWRLGWLVT+DPNGIL  SG V++I   LN  
Sbjct: 329 NPFVPMGVFGSITPVITLGSISKRWIVPGWRLGWLVTNDPNGILCKSGIVETIVSYLNIC 388

Query: 258 SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVM 317
           + P +FIQ AVP+I+++T + FF++II LL +TADIC++ + +IPCITCP KP+GAM VM
Sbjct: 389 ADPTSFIQGAVPQIIEKTTDDFFSRIISLLGKTADICFDGLADIPCITCPHKPEGAMSVM 448

Query: 318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIK 377
           VKLNVS+LEDI DD++FC+KL+KEESVIIL G  VGMKNWLRI FA EP  LEDG+ RIK
Sbjct: 449 VKLNVSLLEDIDDDMDFCMKLSKEESVIILAGFAVGMKNWLRITFATEPPFLEDGIGRIK 508

Query: 378 AFCQRHAKKQ 387
           AFCQRHAKKQ
Sbjct: 509 AFCQRHAKKQ 518

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	387
TAIR|locus:2154714	414	TAT7 "tyrosine aminotransferas	0.950	0.888	0.605	1.3e-123
TAIR|locus:2158926	420	AT5G36160 [Arabidopsis thalian	0.937	0.864	0.598	1.4e-119
UNIPROTKB|Q9ST02	461	naat-A "Nicotianamine aminotra	0.917	0.770	0.586	5.4e-118
UNIPROTKB|Q9ST03	551	naat-B "Nicotianamine aminotra	0.917	0.644	0.586	6.2e-117
TAIR|locus:2046056	462	SUR1 "SUPERROOT 1" [Arabidopsi	0.917	0.768	0.549	8.4e-113
TAIR|locus:2121407	449	AT4G28420 [Arabidopsis thalian	0.925	0.797	0.547	1.4e-110
TAIR|locus:2121382	447	AT4G28410 [Arabidopsis thalian	0.927	0.803	0.498	2.9e-103
TAIR|locus:2047441	445	TAT3 "tyrosine aminotransferas	0.956	0.831	0.498	4.9e-101
TAIR|locus:2128434	424	AT4G23590 [Arabidopsis thalian	0.919	0.839	0.497	3e-94
TAIR|locus:2128459	422	CORI3 "CORONATINE INDUCED 1" [	0.958	0.879	0.474	6.1e-94

TAIR|locus:2154714 TAT7 "tyrosine aminotransferase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1215 (432.8 bits), Expect = 1.3e-123, P = 1.3e-123
 Identities = 224/370 (60%), Positives = 291/370 (78%)

Query:    18 PLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVY 77
             P   S    + V+  AV D+L +  ++ YSPT+G+P ARR IA+YL+RDLPYKLS +DV+
Sbjct:    43 PTLYSCFRTTQVSLQAVSDSLLSNKFHGYSPTVGLPQARRAIAEYLSRDLPYKLSQDDVF 102

Query:    78 LTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVD 137
             +T GC+QAI+++LS+LARP ANIL+PRPG+P+YE+ A     +LE R+ DLLPE  WE+D
Sbjct:   103 ITSGCTQAIDVALSMLARPRANILLPRPGFPIYELCA--KFRHLEVRYVDLLPENGWEID 160

Query:   138 LDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS 197
             LD VEALADENTVA+V+INPGNPCGNV+SYQHL KIA +A+ LG +VIADEVY HLAFGS
Sbjct:   161 LDAVEALADENTVALVVINPGNPCGNVYSYQHLMKIAESAKKLGFLVIADEVYGHLAFGS 220

Query:   198 TPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAA 257
              P+VPMGVFGSIVPV+TLGS+SKRWIVPGWRLGW VT+DP+G  ++   ++  K   +  
Sbjct:   221 KPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFKDPKIIERFKKYFDIL 280

Query:   258 SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVM 317
               P TFIQAAVP I+++T+E+FF K +  LK ++DIC + IKEIPCI    +P+G+M +M
Sbjct:   281 GGPATFIQAAVPTILEQTDESFFKKTLNSLKNSSDICCDWIKEIPCIDSSHRPEGSMAMM 340

Query:   318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIK 377
             VKLN+S+LED+ DD++FC KLA+EESVI+LPG  VG+KNWLRI FAA+  ++E+  +RIK
Sbjct:   341 VKLNLSLLEDVSDDIDFCFKLAREESVILLPGTAVGLKNWLRITFAADATSIEEAFKRIK 400

Query:   378 AFCQRHAKKQ 387
              F  RHAK Q
Sbjct:   401 CFYLRHAKTQ 410

GO:0005737 "cytoplasm" evidence=ISM

GO:0008483 "transaminase activity" evidence=ISS

GO:0009058 "biosynthetic process" evidence=ISS

GO:0004838 "L-tyrosine:2-oxoglutarate aminotransferase activity" evidence=IGI;IMP;IDA;TAS

GO:0010189 "vitamin E biosynthetic process" evidence=IEP;IMP

TAIR|locus:2158926 AT5G36160 [Arabidopsis thaliana (taxid:3702)]

 Score = 1177 (419.4 bits), Expect = 1.4e-119, P = 1.4e-119
 Identities = 219/366 (59%), Positives = 279/366 (76%)

Query:    22 SLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLG 81
             S  +D    E A+ DA+R+  +N YS + GVP AR+ +A+YL+ DL Y++SP DV++T G
Sbjct:    57 SFRTDQAAVE-AICDAVRSTKFNNYSSSSGVPVARKAVAEYLSSDLSYQISPNDVHITAG 115

Query:    82 CSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGV 141
             C QAIEI +S LA PGANIL+PRP YP+Y+  AA     LE R++DLLPE  W+VDLDGV
Sbjct:   116 CVQAIEILISALAIPGANILLPRPTYPMYDSRAAFCQ--LEVRYFDLLPENGWDVDLDGV 173

Query:   142 EALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYV 201
             EALAD+ TVAI++INP NPCGNVFS QHLQKIA TA  LGI+VIADEVY+H AFG  P+V
Sbjct:   174 EALADDKTVAILVINPCNPCGNVFSRQHLQKIAETACKLGILVIADEVYDHFAFGDKPFV 233

Query:   202 PMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPV 261
              M  F  +VPVI LG+ISKRW VPGWRLGW+VT DP+GI+++SGFV ++   +N ++ P 
Sbjct:   234 SMAEFAELVPVIVLGAISKRWFVPGWRLGWMVTLDPHGIMKDSGFVQTLINVVNMSTDPA 293

Query:   262 TFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLN 321
             TFIQ A+P I+  T E FF+  + ++K+ A+ICYE + +IPCITCP KP+G+MF MVKLN
Sbjct:   294 TFIQGAMPDIIGNTKEEFFSSKLEMVKKCAEICYEELMKIPCITCPCKPEGSMFTMVKLN 353

Query:   322 VSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQ 381
              S+LEDI DDL+FC KLAKEES+IILPG+ VG+KNWLRI FA E   L +G  R+K F +
Sbjct:   354 FSLLEDISDDLDFCSKLAKEESMIILPGQAVGLKNWLRITFAVELELLIEGFSRLKNFTE 413

Query:   382 RHAKKQ 387
             RH+K Q
Sbjct:   414 RHSKNQ 419

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA;IDA

GO:0008483 "transaminase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0004838 "L-tyrosine:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0006559 "L-phenylalanine catabolic process" evidence=IGI

GO:0006572 "tyrosine catabolic process" evidence=IGI

UNIPROTKB|Q9ST02 naat-A "Nicotianamine aminotransferase A" [Hordeum vulgare (taxid:4513)]

 Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
 Identities = 210/358 (58%), Positives = 279/358 (77%)

Query:    30 AEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEIS 89
             AEDAV  ALRT  +NCY+  +G+P+AR  +A++L++ +PYKLS +DV+LT G +QAIE+ 
Sbjct:   100 AEDAVAAALRTGQFNCYAAGVGLPAARSAVAEHLSQGVPYKLSADDVFLTAGGTQAIEVI 159

Query:    90 LSVLARP-GANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADEN 148
             + VLA+  GANIL+PRPGYP YE  AA   N LE RH+DL+P+K WE+D+D +E++AD+N
Sbjct:   160 IPVLAQTAGANILLPRPGYPNYEARAAF--NKLEVRHFDLIPDKGWEIDIDSLESIADKN 217

Query:   149 TVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS 208
             T A+VIINP NPCG+V+SY HL K+A  AR LGI+VIADEVY  L  GS P++PMGVFG 
Sbjct:   218 TTAMVIINPNNPCGSVYSYDHLAKVAEVARKLGILVIADEVYGKLVLGSAPFIPMGVFGH 277

Query:   209 IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAV 268
             I PV+++GS+SK WIVPGWRLGW+   DP  IL+ +    SI   LN ++ P TF+Q A+
Sbjct:   278 IAPVLSIGSLSKSWIVPGWRLGWVAVYDPTKILEKTKISTSITNYLNVSTDPATFVQEAL 337

Query:   269 PRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDI 328
             P+I++ T   FF +IIGLLKE+++ICY  IKE   ITCP KP+G+MFVMVKLN+ +LE+I
Sbjct:   338 PKILENTKADFFKRIIGLLKESSEICYREIKENKYITCPHKPEGSMFVMVKLNLHLLEEI 397

Query:   329 GDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAKK 386
              DD++FC KLAKEESVI+ PG  +GM+NW+RI FA  P++L+DGLER+K+FCQR+ KK
Sbjct:   398 HDDIDFCCKLAKEESVILCPGSVLGMENWVRITFACVPSSLQDGLERVKSFCQRNKKK 455

GO:0033855 "nicotianamine aminotransferase activity" evidence=IDA

UNIPROTKB|Q9ST03 naat-B "Nicotianamine aminotransferase B" [Hordeum vulgare (taxid:4513)]

 Score = 1152 (410.6 bits), Expect = 6.2e-117, P = 6.2e-117
 Identities = 210/358 (58%), Positives = 278/358 (77%)

Query:    30 AEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEIS 89
             AEDAV  A+RT  +NCY   +G+P+AR  +A++L++ +PY LS +DV+LT G +QAIE+ 
Sbjct:   190 AEDAVAAAVRTGQFNCYPAGVGLPAARSAVAEHLSQGVPYMLSADDVFLTAGGTQAIEVI 249

Query:    90 LSVLARP-GANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADEN 148
             + VLA+  GANIL+PRPGYP YE  AA   N LE RH+DL+P+K WE+D+D +E++AD+N
Sbjct:   250 IPVLAQTAGANILLPRPGYPNYEARAAF--NRLEVRHFDLIPDKGWEIDIDSLESIADKN 307

Query:   149 TVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS 208
             T A+VIINP NPCG+V+SY HL K+A  A+ LGI+VIADEVY  L  GS P++PMGVFG 
Sbjct:   308 TTAMVIINPNNPCGSVYSYDHLSKVAEVAKRLGILVIADEVYGKLVLGSAPFIPMGVFGH 367

Query:   209 IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAV 268
             I PV+++GS+SK WIVPGWRLGW+   DP  ILQ +    SI   LN ++ P TFIQAA+
Sbjct:   368 ITPVLSIGSLSKSWIVPGWRLGWVAVYDPRKILQETKISTSITNYLNVSTDPATFIQAAL 427

Query:   269 PRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDI 328
             P+I++ T E FF  IIGLLKE+++ICY++IKE   ITCP KP+G+MFVMVKLN+ +LE+I
Sbjct:   428 PQILENTKEDFFKAIIGLLKESSEICYKQIKENKYITCPHKPEGSMFVMVKLNLHLLEEI 487

Query:   329 GDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAKK 386
              DD++FC KLAKEESVI+ PG  +GM NW+RI FA  P++L+DGL RIK+FCQR+ K+
Sbjct:   488 DDDIDFCCKLAKEESVILCPGSVLGMANWVRITFACVPSSLQDGLGRIKSFCQRNKKR 545

GO:0033855 "nicotianamine aminotransferase activity" evidence=IDA

TAIR|locus:2046056 SUR1 "SUPERROOT 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1113 (396.9 bits), Expect = 8.4e-113, P = 8.4e-113
 Identities = 196/357 (54%), Positives = 266/357 (74%)

Query:    30 AEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEIS 89
             AEDAVVD LR+   N Y P  G+  ARR +ADY+NRDLP+KL+PED++LT GC+Q IEI 
Sbjct:    88 AEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIV 147

Query:    90 LSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENT 149
                LARP ANIL+PRPG+P Y+  AA S   LE R +DLLPEK WE+DL+G+EA+ADENT
Sbjct:   148 FESLARPNANILLPRPGFPHYDARAAYSG--LEVRKFDLLPEKEWEIDLEGIEAIADENT 205

Query:   150 VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSI 209
             VA+V+INP NPCGNV+S+ HL+K+A TAR LGI+VI+DEVY+   FG  P+V MG F SI
Sbjct:   206 VAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASI 265

Query:   210 VPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVP 269
             VPV+TL  ISK W+VPGW++GW+  +DP G+ + +  + SIK  L+    P T IQAA+P
Sbjct:   266 VPVLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALP 325

Query:   270 RIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIG 329
              I+++ ++ FFAK   +LK   D+  +R+K+IPC+ CP KP+   +++ KL +S++++I 
Sbjct:   326 AILEKADKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKPESCTYLLTKLELSLMDNIK 385

Query:   330 DDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAKK 386
             DD++FC+KLA+EE+++ LPG  +G+KNW+RI    E   LED LER+K FC RHAKK
Sbjct:   386 DDIDFCVKLAREENLVFLPGDALGLKNWMRITIGVEAHMLEDALERLKGFCTRHAKK 442

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA;RCA

GO:0008483 "transaminase activity" evidence=IEA;ISS

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

GO:0016846 "carbon-sulfur lyase activity" evidence=IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA;IMP

GO:0080108 "S-alkylthiohydroximate lyase activity" evidence=IMP

GO:0001560 "regulation of cell growth by extracellular stimulus" evidence=IMP

GO:0048830 "adventitious root development" evidence=TAS

GO:0016020 "membrane" evidence=IDA

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=IMP;RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0019760 "glucosinolate metabolic process" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

TAIR|locus:2121407 AT4G28420 [Arabidopsis thaliana (taxid:3702)]

 Score = 1092 (389.5 bits), Expect = 1.4e-110, P = 1.4e-110
 Identities = 197/360 (54%), Positives = 260/360 (72%)

Query:    27 STVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI 86
             S + E+AVVD LR+   N Y P  G+  AR+ +ADY+NRDL  K+ P DV++T+GC+Q I
Sbjct:    79 SILVENAVVDVLRSGKGNSYGPAAGILPARQAVADYVNRDLTNKVKPNDVFITVGCNQGI 138

Query:    87 EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD 146
             E+ L  LARP ANIL+PRP YP YE  A  S   LE R +DLLPEK WE+DL G+EA+AD
Sbjct:   139 EVVLQSLARPNANILLPRPSYPHYEARAVYSG--LEVRKFDLLPEKEWEIDLPGIEAMAD 196

Query:   147 ENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF 206
             ENTVA+VIINP NPCGNV+SY HL+K+A TA+ LGI+VI DEVY    FG  P+VPMG F
Sbjct:   197 ENTVAMVIINPNNPCGNVYSYDHLKKVAETAKKLGIMVITDEVYCQTIFGDKPFVPMGEF 256

Query:   207 GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQA 266
              SI PVITLG ISK WIVPGWR+GW+  +DP GIL+++G V SI+  L+      T +QA
Sbjct:   257 SSITPVITLGGISKGWIVPGWRIGWIALNDPRGILKSTGMVQSIQQNLDITPDATTIVQA 316

Query:   267 AVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE 326
             A+P I+ + N+  FAK   +LK+  ++  +R+KEIPC+ C  KP+   +++ KL + +LE
Sbjct:   317 ALPEILGKANKELFAKKNSMLKQNVELVCDRLKEIPCLVCNKKPESCTYLLTKLKLPLLE 376

Query:   327 DIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAKK 386
             DI DD++FC+KLAKEE++++LPG  +G+KNW+RI    E   LED LER+  FC+RH KK
Sbjct:   377 DIEDDMDFCMKLAKEENLVLLPGVALGLKNWIRITIGVEAQMLEDALERLNGFCKRHLKK 436

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA;ISS

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

TAIR|locus:2121382 AT4G28410 [Arabidopsis thaliana (taxid:3702)]

 Score = 1023 (365.2 bits), Expect = 2.9e-103, P = 2.9e-103
 Identities = 180/361 (49%), Positives = 260/361 (72%)

Query:    27 STVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI 86
             S  AE+AVV++LR+   N Y+P +G+  ARR +A+YLNRDLP+K+  +D+++T+GC Q I
Sbjct:    87 SVDAEEAVVESLRSGAANSYAPGVGILPARRAVANYLNRDLPHKIHSDDIFMTVGCCQGI 146

Query:    87 EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD 146
             E  +  LA P ANIL+P   YPLY  HA  S   +E R Y+LLP+  WE+DL GVEA+AD
Sbjct:   147 ETMIHALAGPKANILLPTLIYPLYNSHAIHSL--VEIRKYNLLPDLDWEIDLQGVEAMAD 204

Query:   147 ENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF 206
             ENT+A+VI+NP NPCGNV++Y+HL+K+A  AR LGI+VI+DEVYN   +G   +VPMG+F
Sbjct:   205 ENTIAVVIMNPHNPCGNVYTYEHLKKVAEVARKLGIMVISDEVYNQTIYGENKFVPMGIF 264

Query:   207 GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQA 266
              SI PV+TLGSISK W+VPGWR+GW+  +DP  + + +  V+SIK  L+ +  P T +Q 
Sbjct:   265 SSITPVVTLGSISKGWLVPGWRIGWIAMNDPKNVFKTTRVVESIKEHLDISPDPSTILQF 324

Query:   267 AVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE 326
             A+P I+++T + FF K   +L +  D  ++ +K+IPC+TCP KP+   +++ KL++S+LE
Sbjct:   325 ALPNILEKTKKEFFEKNNSILSQNVDFAFDALKDIPCLTCPKKPESCTYLVTKLDLSLLE 384

Query:   327 DIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAKK 386
             DI +D +FC+KLA+EE+++ LPG  +G+KNW+R +   E + LED   R+K F  RH K 
Sbjct:   385 DITNDFDFCMKLAQEENLVFLPGEVLGLKNWVRFSIGVERSMLEDAFMRLKGFFARHTKT 444

Query:   387 Q 387
             Q
Sbjct:   445 Q 445

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA;ISS

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

TAIR|locus:2047441 TAT3 "tyrosine aminotransferase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1002 (357.8 bits), Expect = 4.9e-101, P = 4.9e-101
 Identities = 186/373 (49%), Positives = 257/373 (68%)

Query:    13 PWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLS 72
             P P  P   S       AE+AV  A R+   N Y+P+ GV  ARR +A+YLN +LP KL 
Sbjct:    54 PTPGEPSAHSNFRTCPEAEEAVAAAARSGMANSYAPSPGVFKARRAVAEYLNGELPTKLK 113

Query:    73 PEDVYLTLGCSQAIEISLSVLA-RPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPE 131
              EDVY+T GC+QAIEI +  LA  P ANIL+PRPGYP Y+  A  S   LE R YDLLPE
Sbjct:   114 AEDVYITGGCNQAIEIVIDSLAGNPSANILLPRPGYPHYDARAVYSG--LEIRKYDLLPE 171

Query:   132 KRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYN 191
               WE++LDG+EA ADENTVA+VIINP NPCGNV++Y HL K+A  AR LGI++I+DEVY+
Sbjct:   172 SDWEINLDGLEAAADENTVAMVIINPNNPCGNVYTYDHLNKVAEMARKLGIMIISDEVYD 231

Query:   192 HLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIK 251
             H+ +G  P++PMG F SI PVITLGSISK W+ PGWR+GW+  +DPNGI  ++G V +I+
Sbjct:   232 HVVYGDKPFIPMGKFASIAPVITLGSISKGWVNPGWRVGWIAMNDPNGIFVSTGVVQAIE 291

Query:   252 GCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ 311
               L+    P   +Q A+P I+++T + FF K I  ++   ++  ER+K+IPC+ CP KP+
Sbjct:   292 DFLDLTPQPSFILQEALPDILEKTPKEFFEKKIKAMRRNVELSCERLKDIPCLFCPKKPE 351

Query:   312 GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLED 371
                ++ +KL+ SML +I +D +FC KL  EES+I++PG  +G +NW+RI+   + + +++
Sbjct:   352 SCSYLWLKLDTSMLNNIKNDFDFCTKLVSEESLILIPGVALGAENWVRISIGTDESVVQE 411

Query:   372 GLERIKAFCQRHA 384
               +R+K F  RHA
Sbjct:   412 IFDRLKGFYDRHA 424

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA;ISS

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0004838 "L-tyrosine:2-oxoglutarate aminotransferase activity" evidence=ISS

TAIR|locus:2128434 AT4G23590 [Arabidopsis thaliana (taxid:3702)]

 Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
 Identities = 178/358 (49%), Positives = 245/358 (68%)

Query:    27 STVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI 86
             S  AE AVV A+     N Y+P++G+P A+R +A+YLNRDL  KL+ +DVY+T+GC QAI
Sbjct:    54 SHTAEKAVVKAVLCGTGNAYAPSIGLPVAKRAVAEYLNRDLDNKLTGDDVYMTVGCKQAI 113

Query:    87 EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD 146
             E+++S+LA+P ANIL+PRPG+P   +H+     +LE R Y+ +PE+ +E+D + V  + D
Sbjct:   114 ELAVSILAKPKANILLPRPGFPWDMVHSI--YKHLEVRRYEFIPERDFEIDFNSVREMVD 171

Query:   147 ENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF 206
             ENT AI IINP NP GN ++  HL+++A  AR LGI+V++DEVY    FGS P+VPMG F
Sbjct:   172 ENTFAIFIINPHNPNGNYYTEAHLKQLATLARELGIMVVSDEVYRWSVFGSNPFVPMGKF 231

Query:   207 GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQA 266
              SIVPVITLGSISK WIVPGWR GWL   D NG+ +++  + + K  L   S P T IQA
Sbjct:   232 SSIVPVITLGSISKGWIVPGWRTGWLALHDLNGVFRSTKVLKAAKEFLEITSKPPTVIQA 291

Query:   267 AVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE 326
             A+P I+++T + FF K    LK+  D  Y ++K IP +TC +KP+   F+  KL+     
Sbjct:   292 AIPTILEKTPQDFFEKRGIFLKDKVDFGYSKLKNIPTLTCYMKPESCTFLWTKLDPLHFV 351

Query:   327 DIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHA 384
             DI DD +FC KLAKEE++++LPG   G  NWLR +   E   LED  ER+K+FC+RH+
Sbjct:   352 DIEDDHDFCRKLAKEENLVVLPGIAFGQNNWLRHSIDMETPRLEDAFERLKSFCERHS 409

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA;ISS

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

TAIR|locus:2128459 CORI3 "CORONATINE INDUCED 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 935 (334.2 bits), Expect = 6.1e-94, P = 6.1e-94
 Identities = 177/373 (47%), Positives = 251/373 (67%)

Query:    15 PRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE 74
             P  P    +L  S  AE AVV A+     N Y+P+LG+ +A+  +A+YLN+ LP KL+ +
Sbjct:    42 PILPPRNEILETSNTAEKAVVKAVLYGSGNAYAPSLGLAAAKSAVAEYLNQGLPKKLTAD 101

Query:    75 DVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRW 134
             DV++TLGC QAIE+++ +LA+P AN+L+P PG+P +++       NLE RHY+ LPEK +
Sbjct:   102 DVFMTLGCKQAIELAVDILAKPKANVLLPSPGFP-WDL-VRSIYKNLEVRHYNFLPEKNF 159

Query:   135 EVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLA 194
             E+D D V AL DENT AI IINP NP GN +S  HL+++A  A+ L I+V++DEV+    
Sbjct:   160 EIDFDSVRALVDENTFAIFIINPHNPNGNTYSEAHLKQLAELAKELKIMVVSDEVFRWTL 219

Query:   195 FGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL 254
             FGS P+VPMG F SIVPV+TLGSISK W VPGWR GWL   D +G+ +N+  + + +  L
Sbjct:   220 FGSNPFVPMGKFSSIVPVVTLGSISKGWKVPGWRTGWLTLHDLDGVFRNTKVLQAAQDFL 279

Query:   255 NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAM 314
                ++P T IQAA+P I+++T + FF K    LK+  +  Y ++K IP +TC +KP+   
Sbjct:   280 QINNNPPTVIQAAIPDILEKTPQEFFDKRQSFLKDKVEFGYSKLKYIPSLTCYMKPEACT 339

Query:   315 FVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLE 374
             F+  +L++S   DI DD +FC KLAKEE++++LPG     KNWLR +   E   LED LE
Sbjct:   340 FLWTELDLSSFVDIEDDQDFCNKLAKEENLVVLPGIAFSQKNWLRHSIDMETPVLEDALE 399

Query:   375 RIKAFCQRHAKKQ 387
             R+K+FC RH+ K+
Sbjct:   400 RLKSFCDRHSNKK 412

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA;IEP

GO:0008483 "transaminase activity" evidence=IEA;ISS;NAS

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0010188 "response to microbial phytotoxin" evidence=IEP

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0004121 "cystathionine beta-lyase activity" evidence=IDA

GO:0004838 "L-tyrosine:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0042538 "hyperosmotic salinity response" evidence=TAS

GO:0050362 "L-tryptophan:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

GO:0048046 "apoplast" evidence=IDA

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54K95	ATTY_DICDI	2, ., 6, ., 1, ., 5	0.3472	0.9121	0.8465	yes	no
Q9FN30	TAT2_ARATH	2, ., 6, ., 1, ., -	0.6054	0.9509	0.8888	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.6.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	387
PLN00145	430	PLN00145, PLN00145, tyrosine/nicotianamine aminotr	0.0
PLN02656	409	PLN02656, PLN02656, tyrosine transaminase	0.0
PLN00143	409	PLN00143, PLN00143, tyrosine/nicotianamine aminotr	0.0
TIGR01265	403	TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine	0.0
PLN02187	462	PLN02187, PLN02187, rooty/superroot1	1e-151
TIGR01264	401	TIGR01264, tyr_amTase_E, tyrosine aminotransferase	1e-112
PTZ00433	412	PTZ00433, PTZ00433, tyrosine aminotransferase; Pro	1e-90
cd00609	350	cd00609, AAT_like, Aspartate aminotransferase fami	9e-79
COG0436	393	COG0436, COG0436, Aspartate/tyrosine/aromatic amin	3e-73
PRK05764	393	PRK05764, PRK05764, aspartate aminotransferase; Pr	3e-61
PRK09265	404	PRK09265, PRK09265, aminotransferase AlaT; Validat	3e-53
PRK08363	398	PRK08363, PRK08363, alanine aminotransferase; Vali	8e-49
pfam00155	357	pfam00155, Aminotran_1_2, Aminotransferase class I	3e-46
PRK13355	517	PRK13355, PRK13355, bifunctional HTH-domain contai	1e-43
PRK06108	382	PRK06108, PRK06108, aspartate aminotransferase; Pr	3e-43
PRK07568	397	PRK07568, PRK07568, aspartate aminotransferase; Pr	2e-39
PTZ00377	481	PTZ00377, PTZ00377, alanine aminotransferase; Prov	5e-38
PRK06836	394	PRK06836, PRK06836, aspartate aminotransferase; Pr	5e-37
PRK06348	384	PRK06348, PRK06348, aspartate aminotransferase; Pr	7e-35
PRK07324	373	PRK07324, PRK07324, transaminase; Validated	5e-32
COG1167	459	COG1167, ARO8, Transcriptional regulators containi	7e-32
PLN00175	413	PLN00175, PLN00175, aminotransferase family protei	2e-31
PRK05957	389	PRK05957, PRK05957, aspartate aminotransferase; Pr	3e-30
PRK07309	391	PRK07309, PRK07309, aromatic amino acid aminotrans	1e-29
PRK06855	433	PRK06855, PRK06855, aminotransferase; Validated	4e-28
PRK07777	387	PRK07777, PRK07777, aminotransferase; Validated	4e-27
PRK08361	391	PRK08361, PRK08361, aspartate aminotransferase; Pr	2e-26
PRK07337	388	PRK07337, PRK07337, aminotransferase; Validated	3e-25
PRK08960	387	PRK08960, PRK08960, hypothetical protein; Provisio	5e-25
PRK08912	387	PRK08912, PRK08912, hypothetical protein; Provisio	1e-24
PRK07683	387	PRK07683, PRK07683, aminotransferase A; Validated	2e-24
PRK06107	402	PRK06107, PRK06107, aspartate aminotransferase; Pr	3e-24
TIGR03947	359	TIGR03947, viomycin_VioD, capreomycidine synthase	1e-23
PRK07682	378	PRK07682, PRK07682, hypothetical protein; Validate	1e-22
COG0079	356	COG0079, HisC, Histidinol-phosphate/aromatic amino	3e-22
COG1168	388	COG1168, MalY, Bifunctional PLP-dependent enzyme w	9e-22
TIGR03538	393	TIGR03538, DapC_gpp, succinyldiaminopimelate trans	4e-21
PLN02231	534	PLN02231, PLN02231, alanine transaminase	1e-20
TIGR01141	346	TIGR01141, hisC, histidinol-phosphate aminotransfe	1e-20
PRK07550	386	PRK07550, PRK07550, hypothetical protein; Provisio	6e-20
TIGR03540	383	TIGR03540, DapC_direct, LL-diaminopimelate aminotr	8e-19
PRK05839	374	PRK05839, PRK05839, hypothetical protein; Provisio	1e-18
PRK06225	380	PRK06225, PRK06225, aspartate aminotransferase; Pr	2e-17
PLN02368	407	PLN02368, PLN02368, alanine transaminase	5e-17
TIGR04350	384	TIGR04350, C_S_lyase_PatB, putative C-S lyase	9e-17
PRK07681	399	PRK07681, PRK07681, aspartate aminotransferase; Pr	9e-17
PRK09147	396	PRK09147, PRK09147, succinyldiaminopimelate transa	2e-16
PRK12414	384	PRK12414, PRK12414, putative aminotransferase; Pro	4e-16
PRK09082	386	PRK09082, PRK09082, methionine aminotransferase; V	5e-16
TIGR03539	357	TIGR03539, DapC_actino, succinyldiaminopimelate tr	8e-16
PRK09276	385	PRK09276, PRK09276, LL-diaminopimelate aminotransf	6e-14
TIGR03537	350	TIGR03537, DapC, succinyldiaminopimelate transamin	9e-14
PRK07865	364	PRK07865, PRK07865, N-succinyldiaminopimelate amin	9e-13
PLN02607	447	PLN02607, PLN02607, 1-aminocyclopropane-1-carboxyl	2e-12
PRK05942	394	PRK05942, PRK05942, aspartate aminotransferase; Pr	3e-12
PRK09440	416	PRK09440, avtA, valine--pyruvate transaminase; Pro	1e-11
PRK09148	405	PRK09148, PRK09148, aminotransferase; Validated	1e-11
PRK08068	389	PRK08068, PRK08068, transaminase; Reviewed	6e-11
PRK08175	395	PRK08175, PRK08175, aminotransferase; Validated	8e-11
PRK06290	410	PRK06290, PRK06290, aspartate aminotransferase; Pr	1e-10
PRK06358	354	PRK06358, PRK06358, threonine-phosphate decarboxyl	1e-10
TIGR01140	330	TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phospha	1e-10
PRK07366	388	PRK07366, PRK07366, succinyldiaminopimelate transa	2e-09
COG3977	417	COG3977, COG3977, Alanine-alpha-ketoisovalerate (o	2e-09
TIGR03542	402	TIGR03542, DAPAT_plant, LL-diaminopimelate aminotr	3e-09
PRK14807	351	PRK14807, PRK14807, histidinol-phosphate aminotran	5e-09
PRK03158	359	PRK03158, PRK03158, histidinol-phosphate aminotran	8e-09
PRK06207	405	PRK06207, PRK06207, aspartate aminotransferase; Pr	1e-08
PRK02731	367	PRK02731, PRK02731, histidinol-phosphate aminotran	3e-08
PRK03967	337	PRK03967, PRK03967, histidinol-phosphate aminotran	4e-08
PLN02450	468	PLN02450, PLN02450, 1-aminocyclopropane-1-carboxyl	2e-07
PRK01533	366	PRK01533, PRK01533, histidinol-phosphate aminotran	3e-07
PLN02376	496	PLN02376, PLN02376, 1-aminocyclopropane-1-carboxyl	1e-06
PRK05166	371	PRK05166, PRK05166, histidinol-phosphate aminotran	2e-06
PRK01688	351	PRK01688, PRK01688, histidinol-phosphate aminotran	2e-06
PRK08056	356	PRK08056, PRK08056, threonine-phosphate decarboxyl	3e-06
PRK08636	403	PRK08636, PRK08636, aspartate aminotransferase; Pr	3e-06
PRK14809	357	PRK14809, PRK14809, histidinol-phosphate aminotran	6e-06
cd00614	369	cd00614, CGS_like, CGS_like: Cystathionine gamma-s	1e-05
PLN03026	380	PLN03026, PLN03026, histidinol-phosphate aminotran	2e-05
COG0626	396	COG0626, MetC, Cystathionine beta-lyases/cystathio	2e-05
PRK04870	356	PRK04870, PRK04870, histidinol-phosphate aminotran	2e-05
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	3e-05
PRK00950	361	PRK00950, PRK00950, histidinol-phosphate aminotran	3e-05
PRK04635	354	PRK04635, PRK04635, histidinol-phosphate aminotran	1e-04
pfam01053	382	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP	2e-04
PRK08354	311	PRK08354, PRK08354, putative aminotransferase; Pro	2e-04
COG1448	396	COG1448, TyrB, Aspartate/tyrosine/aromatic aminotr	2e-04
PRK09275	527	PRK09275, PRK09275, aspartate aminotransferase; Pr	3e-04
TIGR03801	521	TIGR03801, asp_4_decarbox, aspartate 4-decarboxyla	0.001
pfam00266	370	pfam00266, Aminotran_5, Aminotransferase class-V	0.002
PRK07908	349	PRK07908, PRK07908, hypothetical protein; Provisio	0.002
COG2873	426	COG2873, MET17, O-acetylhomoserine sulfhydrylase [	0.002
COG0520	405	COG0520, csdA, Selenocysteine lyase/Cysteine desul	0.003
PRK06425	332	PRK06425, PRK06425, histidinol-phosphate aminotran	0.004
PLN02994	153	PLN02994, PLN02994, 1-aminocyclopropane-1-carboxyl	0.004

>gnl|CDD|215074 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase; Provisional

 Score =  625 bits (1614), Expect = 0.0
 Identities = 245/357 (68%), Positives = 296/357 (82%), Gaps = 2/357 (0%)

Query: 30  AEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEIS 89
           AEDAV  ALR+  YN YS  +G+  ARR IA+YL+RDLPY+LS +D+YLT GC+QAIEI 
Sbjct: 74  AEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEII 133

Query: 90  LSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENT 149
           +SVLA+PGANIL+PRPGYPLYE  A    + LE RH+DLLPE+ WEVDL+GVEALADENT
Sbjct: 134 MSVLAQPGANILLPRPGYPLYEARAV--FSGLEVRHFDLLPERGWEVDLEGVEALADENT 191

Query: 150 VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSI 209
           VA+VIINP NPCG+V+SY+HL KIA TAR LGI+VIADEVY+HL FGS P+VPMGVFG +
Sbjct: 192 VAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEV 251

Query: 210 VPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVP 269
            PV+TLGSISKRW+VPGWRLGW+ T DPNGIL+ +  VDSI+  LN ++ P TF+Q A+P
Sbjct: 252 APVLTLGSISKRWVVPGWRLGWIATCDPNGILKETKVVDSIRNYLNISTDPATFVQGAIP 311

Query: 270 RIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIG 329
           +I+  T E FF K +GLLKETADICYE+IKEI CITCP KP+G+MFVMVKL++S L  I 
Sbjct: 312 QIIANTKEEFFTKTLGLLKETADICYEKIKEIKCITCPHKPEGSMFVMVKLDLSCLSGIK 371

Query: 330 DDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAKK 386
           DD++FC KLAKEESV++LPG  +GMKNWLRI FA +P +LEDGLER+K+FC RHAK 
Sbjct: 372 DDMDFCCKLAKEESVVVLPGSALGMKNWLRITFAIDPPSLEDGLERLKSFCLRHAKL 428

Length = 430

>gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase

 Score =  574 bits (1482), Expect = 0.0
 Identities = 245/370 (66%), Positives = 308/370 (83%), Gaps = 2/370 (0%)

Query: 18  PLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVY 77
           P   S    + VA++AVVDAL++  +N Y+PT+G+P ARR IA+YL+RDLPYKLS +DV+
Sbjct: 41  PTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVF 100

Query: 78  LTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVD 137
           +T GC+QAI+++LS+LARPGANIL+PRPG+P+YE+ AA    +LE R+ DLLPEK WEVD
Sbjct: 101 ITSGCTQAIDVALSMLARPGANILLPRPGFPIYELCAA--FRHLEVRYVDLLPEKGWEVD 158

Query: 138 LDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS 197
           LD VEALAD+NTVA+VIINPGNPCGNV+SYQHL+KIA TA  L I+VIADEVY HLAFGS
Sbjct: 159 LDAVEALADQNTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGS 218

Query: 198 TPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAA 257
            P+VPMGVFGSIVPV+TLGS+SKRWIVPGWRLGW VT+DP+G  ++   V+ IK   +  
Sbjct: 219 NPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFDIL 278

Query: 258 SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVM 317
             P TFIQAAVP I+++T+E+FF K I +LK+++DIC +RIKEIPCITCP KP+G+M VM
Sbjct: 279 GGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIPCITCPHKPEGSMAVM 338

Query: 318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIK 377
           VKLN+S+LEDI DD++FC KLA+EESVIILPG  VG+KNWLRI FAA+P++LE+ L RIK
Sbjct: 339 VKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVGLKNWLRITFAADPSSLEEALGRIK 398

Query: 378 AFCQRHAKKQ 387
           +F  RH+K Q
Sbjct: 399 SFYLRHSKTQ 408

Length = 409

>gnl|CDD|165711 PLN00143, PLN00143, tyrosine/nicotianamine aminotransferase; Provisional

 Score =  567 bits (1462), Expect = 0.0
 Identities = 240/369 (65%), Positives = 294/369 (79%), Gaps = 2/369 (0%)

Query: 18  PLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVY 77
           P        + +AEDA+V+A+R+A +N Y+PT G+  ARR IADYL+ DLPY+LSP+DVY
Sbjct: 42  PSCFECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVY 101

Query: 78  LTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVD 137
           LTLGC  A EI + VLARP ANIL+PRPG+P  E +A    ++LE RH+DLLPEK WEVD
Sbjct: 102 LTLGCKHAAEIIIKVLARPEANILLPRPGFPDVETYA--IFHHLEIRHFDLLPEKGWEVD 159

Query: 138 LDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS 197
           LD VEA+ADENT+A+VIINPGNPCG+V+SY+HL KIA TAR LGI+VIADEVY H+ FGS
Sbjct: 160 LDAVEAIADENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGS 219

Query: 198 TPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAA 257
            P+VPMG+F SIVPVITLGSISKRW++PGW LGWLVT DP+G+LQ     DSIK  LN A
Sbjct: 220 KPFVPMGLFASIVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALNPA 279

Query: 258 SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVM 317
             P TFIQAA+P I+++T E FF+K I +L+     CY+++KEIPCI CP K +GA F +
Sbjct: 280 PFPPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCIMCPQKAEGAFFAL 339

Query: 318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIK 377
           VKLN+ +LEDI DD+EFCLKLAKEES+IILPG TVG+KNWLRI FA E ++LEDGL R+K
Sbjct: 340 VKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITFAVEQSSLEDGLGRLK 399

Query: 378 AFCQRHAKK 386
           +FC RHAKK
Sbjct: 400 SFCGRHAKK 408

Length = 409

>gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family aminotransferase

 Score =  538 bits (1389), Expect = 0.0
 Identities = 197/355 (55%), Positives = 259/355 (72%), Gaps = 4/355 (1%)

Query: 30  AEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEIS 89
           AE+AV DALR+  +N Y+P++G  +AR  +A+YL+ DLP KL+ +DV LT GCSQAIEI 
Sbjct: 53  AEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEIC 112

Query: 90  LSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENT 149
           +  LA PGANIL+PRPG+PLY+  AA S   LE R YDLLPEK WE+DLDG+E+LADE T
Sbjct: 113 IEALANPGANILVPRPGFPLYDTRAAFSG--LEVRLYDLLPEKDWEIDLDGLESLADEKT 170

Query: 150 VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSI 209
           VAIV+INP NPCG+VFS  HLQKIA  A  LGI +IADE+Y H+ FG  P++PM  F SI
Sbjct: 171 VAIVVINPSNPCGSVFSRDHLQKIAEVAEKLGIPIIADEIYGHMVFGDAPFIPMASFASI 230

Query: 210 VPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVP 269
           VPV++LG ISKRW+VPGWRLGW++  DP+GI +++  +  +K  L     P T +Q A+P
Sbjct: 231 VPVLSLGGISKRWVVPGWRLGWIIIHDPHGIFRDT-VLQGLKNLLQRILGPATIVQGALP 289

Query: 270 RIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIG 329
            I++ T + FF   I +LK  A++CYE +K+IP + CP KP+GAM++MVKL + +  +I 
Sbjct: 290 DILENTPQEFFDGKISVLKSNAELCYEELKDIPGLVCP-KPEGAMYLMVKLELELFPEIK 348

Query: 330 DDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHA 384
           DD++FC KLA+EESVI LPG   G+ NW+RI      + LE+   RIK FC+RHA
Sbjct: 349 DDVDFCEKLAREESVICLPGSAFGLPNWVRITITVPESMLEEACSRIKEFCERHA 403

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. Length = 403

>gnl|CDD|215119 PLN02187, PLN02187, rooty/superroot1

 Score =  436 bits (1121), Expect = e-151
 Identities = 196/357 (54%), Positives = 266/357 (74%), Gaps = 2/357 (0%)

Query: 30  AEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEIS 89
           AEDAVVD LR+   N Y P  G+  ARR +ADY+NRDLP+KL+PED++LT GC+Q IEI 
Sbjct: 88  AEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIV 147

Query: 90  LSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENT 149
              LARP ANIL+PRPG+P Y+  AA S   LE R +DLLPEK WE+DL+G+EA+ADENT
Sbjct: 148 FESLARPNANILLPRPGFPHYDARAAYSG--LEVRKFDLLPEKEWEIDLEGIEAIADENT 205

Query: 150 VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSI 209
           VA+V+INP NPCGNV+S+ HL+K+A TAR LGI+VI+DEVY+   FG  P+V MG F SI
Sbjct: 206 VAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASI 265

Query: 210 VPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVP 269
           VPV+TL  ISK W+VPGW++GW+  +DP G+ + +  + SIK  L+    P T IQAA+P
Sbjct: 266 VPVLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALP 325

Query: 270 RIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIG 329
            I+++ ++ FFAK   +LK   D+  +R+K+IPC+ CP KP+   +++ KL +S++++I 
Sbjct: 326 AILEKADKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKPESCTYLLTKLELSLMDNIK 385

Query: 330 DDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAKK 386
           DD++FC+KLA+EE+++ LPG  +G+KNW+RI    E   LED LER+K FC RHAKK
Sbjct: 386 DDIDFCVKLAREENLVFLPGDALGLKNWMRITIGVEAHMLEDALERLKGFCTRHAKK 442

Length = 462

>gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic

 Score =  334 bits (857), Expect = e-112
 Identities = 141/382 (36%), Positives = 213/382 (55%), Gaps = 15/382 (3%)

Query: 12  SPWPRRPLGVSLLSDSTV---------AEDAVVDALRTAHYNCYSPTLGVPSARRGIADY 62
            P P +P+    + D TV            A+ D+L +  YN Y+PT+G  SAR  IA Y
Sbjct: 26  KPNPEKPVIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASY 85

Query: 63  LNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLE 122
              +    +  +DV L  GCS AIE+ ++ LA  G NIL+PRPG+PLY   A      +E
Sbjct: 86  Y-HNPDGPIEADDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYRTLAES--MGIE 142

Query: 123 ARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGI 182
            + Y+LLP+K WE+DL  +E+L DE T A+V+ NP NPCG+VFS QHL++I   A    +
Sbjct: 143 VKLYNLLPDKSWEIDLKQLESLIDEKTAALVVNNPSNPCGSVFSRQHLEEILAVAERQCL 202

Query: 183 IVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQ 242
            +IADE+Y  + F    + P+    S VP+++ G ++KRW+VPGWRLGW++  D  GIL+
Sbjct: 203 PIIADEIYGDMVFSGATFEPVASLSSNVPILSCGGLAKRWLVPGWRLGWIIIHDRRGILR 262

Query: 243 NSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIP 302
           +    D +         P T +Q A+P I+  T + +F   + +L+  A +CY  +  +P
Sbjct: 263 D--IRDGLVKLSQRILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVP 320

Query: 303 CITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF 362
            +  PV P GAM++MV + +    +  +D+EF  +L  E+SV  LPG       + R+  
Sbjct: 321 GLQ-PVMPSGAMYMMVGIEMEHFPEFKNDVEFTERLIAEQSVFCLPGSCFEYPGFFRVVL 379

Query: 363 AAEPATLEDGLERIKAFCQRHA 384
                 +E+   RI+ FC+RH 
Sbjct: 380 TVPVVMMEEACSRIQEFCERHY 401

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs [Energy metabolism, Amino acids and amines]. Length = 401

>gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional

 Score =  278 bits (713), Expect = 1e-90
 Identities = 130/368 (35%), Positives = 199/368 (54%), Gaps = 11/368 (2%)

Query: 24  LSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYK------LSPEDVY 77
           L    +   A+V+A+ +   N Y PT+G P AR  +A Y      +K      +  ++V 
Sbjct: 49  LLTPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVV 108

Query: 78  LTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVD 137
           L  G S AI ++L+ L   G NIL+P PG+P YE         +E R Y+  PEK WE D
Sbjct: 109 LCSGVSHAILMALTALCDEGDNILVPAPGFPHYE--TVCKAYGIEMRFYNCRPEKDWEAD 166

Query: 138 LDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS 197
           LD +  L D+ T A+++ NP NPCG+ FS +H++ I R    L + +I+DE+Y  + F  
Sbjct: 167 LDEIRRLVDDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNG 226

Query: 198 TPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAA 257
             +  +  F + VP + LG  +K  +VPGWRLGWL+  DP+G      F+D +K      
Sbjct: 227 ATFTSVADFDTTVPRVILGGTAKNLVVPGWRLGWLLLVDPHGN--GGDFLDGMKRLGMLV 284

Query: 258 SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVM 317
             P + +QAA+   +  T +    +I+  L+E A + Y  I E   ++    P+G+MF+M
Sbjct: 285 CGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGECIGLSP-TMPRGSMFLM 343

Query: 318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIK 377
            +L++    DI  D+EF  KL +EE+V +LPG    M  + R+  +     L + +ERIK
Sbjct: 344 SRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTISRPVEVLREAVERIK 403

Query: 378 AFCQRHAK 385
           AFC+RH K
Sbjct: 404 AFCERHKK 411

Length = 412

>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family

 Score =  246 bits (629), Expect = 9e-79
 Identities = 101/351 (28%), Positives = 162/351 (46%), Gaps = 18/351 (5%)

Query: 30  AEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEIS 89
             +A+  A   A    Y P  G+P  R  IA++L R     + PE++ +T G  +A+ + 
Sbjct: 16  VLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLL 75

Query: 90  LSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENT 149
           L  L  PG  +L+P P YP YE  A       E     L  E  + +DL+ +EA     T
Sbjct: 76  LRALLNPGDEVLVPDPTYPGYEAAAR--LAGAEVVPVPLDEEGGFLLDLELLEAAKTPKT 133

Query: 150 VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSI 209
             + + NP NP G V S + L+++A  A+  GI++I+DE Y  L +   P   + +  + 
Sbjct: 134 KLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAY 193

Query: 210 VPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVP 269
             VI L S SK + +PG R+G+L+      + +    +       +      T  QAA  
Sbjct: 194 ERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSGPS------TLSQAAAA 247

Query: 270 RIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIG 329
             +D+  E    ++    +   D   E +KE+  +   VKP G  F+ + L        G
Sbjct: 248 AALDD-GEEHLEELRERYRRRRDALLEALKELGPLVV-VKPSGGFFLWLDLPE------G 299

Query: 330 DDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKA 378
           DD EF  +L  E  V++ PG   G   + ++R++FA     LE+ LER+  
Sbjct: 300 DDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATPEEELEEALERLAE 350

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350

>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

 Score =  232 bits (595), Expect = 3e-73
 Identities = 102/362 (28%), Positives = 173/362 (47%), Gaps = 25/362 (6%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIEISL 90
           +A ++AL     + Y+P+ G+P  R  IA+   R     + PE ++ +T G  +A+ ++ 
Sbjct: 48  EAAIEALEEGGTH-YTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAF 106

Query: 91  SVLARPGANILIPRPGYPLYE--IHAAGSNNNLEARHYDLLPEKR-WEVDLDGVEALADE 147
             L  PG  +LIP PGYP YE  +  AG     +     L  E+  ++ DL+ +EA    
Sbjct: 107 LALLNPGDEVLIPDPGYPSYEAAVKLAG----GKPVPVPLDEEENGFKPDLEDLEAAITP 162

Query: 148 NTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAF-GSTPYVPMGVF 206
            T AI++ +P NP G V+S + L+ I   AR   II+I+DE+Y  L + G+     + + 
Sbjct: 163 KTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELA 222

Query: 207 GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQA 266
           G+    IT+ S SK + + GWR+GW+V        +    +  +K  L   S   T  Q 
Sbjct: 223 GARDRTITINSFSKTYGMTGWRIGWVVGPPE----ELIAALRKLKSYLT--SCAPTPAQY 276

Query: 267 AVPRIVDETNE-AFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML 325
           A    ++         ++    +E  D+  E + EI  ++    P+GA ++  K+   + 
Sbjct: 277 AAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPELL- 335

Query: 326 EDIGDDLEFCLKLAKEESVIILPGRTVGM---KNWLRIAFAAEPATLEDGLERIKAFCQR 382
               D  EF  KL +E  V ++PG   G    + ++R++ A    TLE+ L R+  F   
Sbjct: 336 ----DSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLATSEETLEEALRRLARFLAE 391

Query: 383 HA 384
           + 
Sbjct: 392 YR 393

Length = 393

>gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional

 Score =  201 bits (515), Expect = 3e-61
 Identities = 105/366 (28%), Positives = 173/366 (47%), Gaps = 38/366 (10%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLS 91
           +A ++AL       Y+P  G+P  R  IA  L RD      P  V +T G  QA+  +  
Sbjct: 51  EAAIEALD-DGKTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFM 109

Query: 92  VLARPGANILIPRPGYPLYE--IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENT 149
            L  PG  ++IP P +  Y   +  AG              E  +++ ++ +EA     T
Sbjct: 110 ALLDPGDEVIIPAPYWVSYPEMVKLAGG----VPVFVPTGEENGFKLTVEQLEAAITPKT 165

Query: 150 VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSI 209
            A+++ +P NP G V+S + L+ IA  A    I V++DE+Y  L +    +  +    S+
Sbjct: 166 KALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIA---SL 222

Query: 210 VP-----VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFI 264
            P      IT+   SK + + GWRLG+     P  +++    + S     ++ S+P +  
Sbjct: 223 SPELRDRTITVNGFSKAYAMTGWRLGYAAG--PKELIKAMSKLQS-----HSTSNPTSIA 275

Query: 265 Q-AAVP------RIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVM 317
           Q AAV         V+E  +AF        +E  D+  + + EIP + CP KP+GA +V 
Sbjct: 276 QYAAVAALNGPQDEVEEMRQAF--------EERRDLMVDGLNEIPGLECP-KPEGAFYVF 326

Query: 318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIK 377
             ++  + + I D LEF   L +E  V ++PG   G   ++R+++A     LE+GLERI+
Sbjct: 327 PNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLSYATSLEDLEEGLERIE 386

Query: 378 AFCQRH 383
            F +  
Sbjct: 387 RFLESL 392

Length = 393

>gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated

 Score =  181 bits (461), Expect = 3e-53
 Identities = 111/368 (30%), Positives = 176/368 (47%), Gaps = 35/368 (9%)

Query: 33  AVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSV 92
            V+  L TA    YS + G+ SAR+ I  Y  +     +  +D+Y+  G S+ I +++  
Sbjct: 57  DVIRNLPTAQ--GYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQA 114

Query: 93  LARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAI 152
           L   G  +L+P P YPL+   AA S +  +  HY    E  W  DLD + +     T AI
Sbjct: 115 LLNNGDEVLVPAPDYPLWT--AAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITPRTKAI 172

Query: 153 VIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPV 212
           VIINP NP G V+S + L++I   AR   +I+ ADE+Y+ + +    ++ +      +  
Sbjct: 173 VIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLC 232

Query: 213 ITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD------SIKGCLNA-ASHPVTFIQ 265
           +T   +SK + V G+R+GW+V S P       G+++      S++ C N  A H    IQ
Sbjct: 233 VTFNGLSKAYRVAGFRVGWMVLSGPKK--HAKGYIEGLDMLASMRLCANVPAQHA---IQ 287

Query: 266 AAV---PRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNV 322
            A+     I +           G L E  D  +E +  IP ++C VKP+GA++   KL+ 
Sbjct: 288 TALGGYQSINELILPG------GRLYEQRDRAWELLNAIPGVSC-VKPKGALYAFPKLDP 340

Query: 323 SMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNW-----LRIAFAAEPATLEDGLERIK 377
            +   I DD +F L L  +E V+++ G      NW      RI        LE+ + RI 
Sbjct: 341 KVY-PIHDDEQFVLDLLLQEKVLLVQGTGF---NWPEPDHFRIVTLPRVDDLEEAIGRIG 396

Query: 378 AFCQRHAK 385
            F   + +
Sbjct: 397 RFLSGYRQ 404

Length = 404

>gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated

 Score =  169 bits (430), Expect = 8e-49
 Identities = 105/363 (28%), Positives = 167/363 (46%), Gaps = 27/363 (7%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLS 91
           +A   A++  H N Y P+ G+P  R  I     R     ++P+DV +T   ++A+++   
Sbjct: 53  EAYCRAIKEGH-NYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFG 111

Query: 92  VLARPGANILIPRPGYPLY----EIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE 147
            L  PG  ILIP P YP Y    + +            Y  + E+ W+ D+D +     E
Sbjct: 112 ALLDPGDEILIPGPSYPPYTGLVKFYGG------VPVEYRTIEEEGWQPDIDDIRKKITE 165

Query: 148 NTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFG 207
            T AI +INP NP G ++  + L++I   A    + VI+DE+Y+ + +    +V  G   
Sbjct: 166 KTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGK-HVSPGSLT 224

Query: 208 SIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQ-A 266
             VPVI +  +SK +   GWRLG++   DP G L  +   ++I         P T  Q A
Sbjct: 225 KDVPVIVMNGLSKVYFATGWRLGYIYFVDPEGKL--AEVREAIDKLARIRLCPNTPAQFA 282

Query: 267 AVPRIVDETN--EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSM 324
           A+  +    +  E +  K    LKE  D  Y+R+ EIP I+   KPQGA ++  ++    
Sbjct: 283 AIAGLTGPMDYLEEYMKK----LKERRDYIYKRLNEIPGISTT-KPQGAFYIFPRIEEGP 337

Query: 325 LEDIGDDLEFCLKLAKEESVIILPGRTVG-MKNW-LRIAFAAEPATLEDGLERIKAFCQR 382
                DD EF L +  E  V+ + G   G       R+ F      LE+ ++R + F + 
Sbjct: 338 W---KDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLPPVEILEEAMDRFEEFMRE 394

Query: 383 HAK 385
              
Sbjct: 395 RLG 397

Length = 398

>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II

 Score =  161 bits (410), Expect = 3e-46
 Identities = 95/376 (25%), Positives = 152/376 (40%), Gaps = 42/376 (11%)

Query: 19  LGVSLLSDSTVAEDAVVDALRTAH----YNCYSPTLGVPSARRGIADYLNRDLPYKLSPE 74
           LG +     +    AV  A + A      N Y PT G+P  R  +A +L R    KL  E
Sbjct: 6   LGSNEYLGDSGTLPAVAKAEKDALAGGTRNLYGPTDGLPELREALAKFLGRSPVLKLDRE 65

Query: 75  DVYLTLGCSQAIEISLSVLAR--PGANILIPRPGYPLYE--IHAAGSNNNLEARHYDLLP 130
              +    + A   +L  L R  PG  IL+P P YP Y      AG     E   Y L  
Sbjct: 66  AAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLAG----GEVVRYPLYS 121

Query: 131 EKRWEVDLDGVEALADENTVAIVII---NPGNPCGNVFSYQHLQKIARTARNLGIIVIAD 187
              + +D D +EA   E T    ++   +P NP G V + + L+K+   A+   I+++ D
Sbjct: 122 SNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEHNILLLVD 181

Query: 188 EVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF 246
           E Y    FGS   V      +    ++ +GS SK + + GWR+G+++ +           
Sbjct: 182 EAYAGFVFGSLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNAA--------- 232

Query: 247 VDSIKGCLNAASHPVTF---IQAAVPRIVDETNE--AFFAKIIGLLKETADICYERIKEI 301
              +   L   + P      +QAA    + +     +   ++   +KE  D   + ++  
Sbjct: 233 ---VISQLRKLARPFYSSTHLQAAAAAALSDPLLVASELEEMRQRIKERRDYLRDGLEAA 289

Query: 302 PCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIA 361
             ++  +  Q   F++  L+          L     L +E  V + PG + G   WLRI 
Sbjct: 290 G-LSV-LPSQAGFFLLTGLDPEA------ALALAQVLLEEVGVYVTPGSSFGGPGWLRIT 341

Query: 362 FAA-EPATLEDGLERI 376
            A      LE+ LE I
Sbjct: 342 VAGGTEEELEELLEAI 357

Length = 357

>gnl|CDD|237361 PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional

 Score =  158 bits (401), Expect = 1e-43
 Identities = 100/352 (28%), Positives = 165/352 (46%), Gaps = 39/352 (11%)

Query: 46  YSPTLGVPSARRGIADYLN-RDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPR 104
           YS + G+ SAR+ I  Y   + LP  +  +D+Y   G S+ I +S+S L   G  +LIP 
Sbjct: 181 YSDSKGLFSARKAIMQYAQLKGLP-NVDVDDIYTGNGVSELINLSMSALLDDGDEVLIPS 239

Query: 105 PGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNV 164
           P YPL+   A  +     A HY    +  W  D+D + +     T AIVIINP NP G +
Sbjct: 240 PDYPLWT--ACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITSRTKAIVIINPNNPTGAL 297

Query: 165 FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIV 224
           +  + LQ+I   AR   +I+ +DE+Y+ L      +  +      +  +T   +SK  ++
Sbjct: 298 YPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMI 357

Query: 225 PGWRLGWLVTSDPNGILQNSGFVDSIKG---------CLNAASHPVTFIQAAV---PRIV 272
            G+R+GW++ S    I +     D I+G         C N  +  +  +Q A+     + 
Sbjct: 358 AGYRIGWMILSGNKRIAK-----DYIEGLNMLANMRLCSNVPAQSI--VQTALGGHQSVK 410

Query: 273 DETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDL 332
           D           G + E  ++ Y  +  IP I+  VKP+ A ++  K++V    +I DD 
Sbjct: 411 DYLVPG------GRVYEQRELVYNALNAIPGISA-VKPKAAFYIFPKIDVKKF-NIHDDE 462

Query: 333 EFCLKLAKEESVIILPGRTVGMKNW-----LRIAFAAEPATLEDGLERIKAF 379
           +F L L  ++ V+I+ G      NW      R+ +      LED ++R+  F
Sbjct: 463 QFALDLLHDKKVLIVQG---TGFNWDKPDHFRVVYLPRLEDLEDAMDRLADF 511

Length = 517

>gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional

 Score =  154 bits (391), Expect = 3e-43
 Identities = 102/358 (28%), Positives = 156/358 (43%), Gaps = 26/358 (7%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLS 91
           DA   AL       Y+  LG+P  R  +A Y++R       PE + +T    QA+ ++  
Sbjct: 44  DAAAAALADGE-TFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQ 102

Query: 92  VLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEK-RWEVDLDGVEALADENTV 150
            L  PG  ++   P +P   + AA            L      W +DLD + A     T 
Sbjct: 103 ALVGPGDEVVAVTPLWP--NLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITPRTR 160

Query: 151 AIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIV 210
           A+ I +P NP G   S   L+ I    R  G+ ++ADEVY  L +      P   F  I 
Sbjct: 161 ALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPS--FLDIA 218

Query: 211 P----VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQA 266
                +I + S SK W + GWRLGWLV   P  + Q        K      S    F+Q 
Sbjct: 219 EPDDRIIFVNSFSKNWAMTGWRLGWLVA--PPALGQVLE-----KLIEYNTSCVAQFVQR 271

Query: 267 AVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE 326
           A    +DE  E F A+++  L+ + D   + ++ +P +    KP GAM+   +     + 
Sbjct: 272 AAVAALDEG-EDFVAELVARLRRSRDHLVDALRALPGVEVA-KPDGAMYAFFR-----IP 324

Query: 327 DIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQR 382
            + D L    +L  E  + + PG   G   + +LR  FA +PA L++ +ER++ F  R
Sbjct: 325 GVTDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFARDPARLDEAVERLRRFLAR 382

Length = 382

>gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional

 Score =  144 bits (365), Expect = 2e-39
 Identities = 99/350 (28%), Positives = 162/350 (46%), Gaps = 40/350 (11%)

Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRP 105
           YS + G+P  R   A Y  +     + P+++ +T G S+AI  ++  +  PG  IL+P P
Sbjct: 62  YSHSQGIPELREAFAKYYKK-WGIDVEPDEILITNGGSEAILFAMMAICDPGDEILVPEP 120

Query: 106 GYPLYEIHAAGSNNNLEARHYDL-----LPEKRWEVDLDGVEALADENTVAIVIINPGNP 160
            Y  Y   A  +   +      +     LP K      + +E L    T AI+I NPGNP
Sbjct: 121 FYANYNGFATSAGVKIVPVTTKIEEGFHLPSK------EEIEKLITPKTKAILISNPGNP 174

Query: 161 CGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVP-VITLGSIS 219
            G V++ + L+ +A  A+   + +I+DEVY    +    Y        +   VI + S+S
Sbjct: 175 TGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVS 234

Query: 220 KRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAF 279
           KR+   G R+G L++       +N   + +      A   P T  Q     ++D T E++
Sbjct: 235 KRYSACGARIGCLIS-------KNKELIAAAMKLCQARLSPPTLEQIGAAALLD-TPESY 286

Query: 280 FAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLE-FCLKL 338
           F ++    K+  DI YE + +IP + C  KP+GA +++ KL V       DD E F   L
Sbjct: 287 FDEVREEYKKRRDILYEELNKIPGVVCE-KPKGAFYIIAKLPV-------DDAEDFAKWL 338

Query: 339 AKE-----ESVIILPGR----TVGM-KNWLRIAFAAEPATLEDGLERIKA 378
             +     E+V++ P      T G+ KN +RIA+      L+  +E +K 
Sbjct: 339 LTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVLNEEDLKRAMEILKE 388

Length = 397

>gnl|CDD|240391 PTZ00377, PTZ00377, alanine aminotransferase; Provisional

 Score =  142 bits (359), Expect = 5e-38
 Identities = 104/408 (25%), Positives = 177/408 (43%), Gaps = 49/408 (12%)

Query: 22  SLLSDSTVAEDAVVDALRTA-HYN--------CYSPTLGVPSARRGIADYLNRDLPYKLS 72
            LL D +V+     D +  A  Y          Y+ + G P  R+ +A ++ R       
Sbjct: 78  FLLEDPSVSSLFPADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKD 137

Query: 73  PEDVYLTLGCSQAIEISLSVLAR-PGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPE 131
           P D++LT G S  I++ L +L   P   ++IP P YPLY   AA +    +   Y L  E
Sbjct: 138 PSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYS--AAITLLGGKQVPYYLDEE 195

Query: 132 KRWEVDLDGVEALADE------NTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVI 185
           K W +D + +E   ++         A+V+INPGNP G V +   +++I +     GI+++
Sbjct: 196 KGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLM 255

Query: 186 ADEVYN------HLAFGSTPYVPMGV---FGSIVPVITLGSISKRWIVP-GWRLGW--LV 233
           ADEVY          F S   V + +   + + V +++  S SK  I   G R G+  L 
Sbjct: 256 ADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELT 315

Query: 234 TSDPNGILQNSGFVD--SIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAK---IIGLLK 288
              P    Q        SI  C N     +T +    PR  D +   +  +   I   LK
Sbjct: 316 NIPPEVREQ---IYKLASINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLK 372

Query: 289 ETADICYERIKEIPCITCPVKPQGAMFVMVKLNVS-------MLEDIGDDLEFCLKLAKE 341
             A++  + + +I  ++C    +GAM+   ++ +            +  D+ +CL+L + 
Sbjct: 373 RRAELLTDELNKIEGVSCQ-PVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLES 431

Query: 342 ESVIILPGRTVGMK---NWLRIAFAAEPATLEDGLERIKAFCQRHAKK 386
             ++++PG   G K      RI        +E+ +++IK F +   KK
Sbjct: 432 TGIVVVPGSGFGQKPGTYHFRITILPPEEQIEEMVKKIKEFHESFMKK 479

Length = 481

>gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional

 Score =  138 bits (349), Expect = 5e-37
 Identities = 92/349 (26%), Positives = 162/349 (46%), Gaps = 38/349 (10%)

Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRP 105
           Y P  G P  R  IA+ LNR     L+ + + +T G + A+ ++L  +  PG  +++  P
Sbjct: 69  YMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAILNPGDEVIVFAP 128

Query: 106 GYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVF 165
            +  Y  +       L     D      ++ DLD +EA     T A++I +P NP G V+
Sbjct: 129 YFVEYRFYVDNHGGKLVVVPTD---TDTFQPDLDALEAAITPKTKAVIINSPNNPTGVVY 185

Query: 166 SYQHLQKIA----RTARNLG--IIVIADEVYNHLAFGST--PYVPMGVFGSIVPVITLGS 217
           S + L+ +A      ++  G  I +I+DE Y  + +     PY+      SIV    + S
Sbjct: 186 SEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIV----VYS 241

Query: 218 ISKRWIVPGWRLGWLVTS----DPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVD 273
            SK   +PG R+G++  +    D + ++    F + I G +NA   P    Q  V + +D
Sbjct: 242 FSKSLSLPGERIGYIAVNPEMEDADDLVAALVFANRILGFVNA---PALM-QRVVAKCLD 297

Query: 274 ETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLE 333
            T +      + + K   D+ Y+ + E+    C VKPQGA ++  K   S      DD+ 
Sbjct: 298 ATVD------VSIYKRNRDLLYDGLTELG-FEC-VKPQGAFYLFPK---SP---EEDDVA 343

Query: 334 FCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQR 382
           FC + AK+ +++++PG   G   + R+++  +  T+E  L   +   + 
Sbjct: 344 FC-EKAKKHNLLLVPGSGFGCPGYFRLSYCVDTETIERSLPAFEKLAKE 391

Length = 394

>gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional

 Score =  131 bits (332), Expect = 7e-35
 Identities = 92/365 (25%), Positives = 171/365 (46%), Gaps = 37/365 (10%)

Query: 23  LLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGC 82
           L++D ++   A  DA     +  Y+ + G       I  Y +++        ++  T+G 
Sbjct: 41  LITDESIINAAFEDA--KKGHTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGA 98

Query: 83  SQAIEISLSVLARPGANILIPRPGYPLY--EIHAAGSNNNLEARHYDLLPEKRWEVDLDG 140
              + ++L  +  PG  ++I  P +  Y  +I   G     +    +   E  +++++  
Sbjct: 99  CHGMYLALQSILDPGDEVIIHEPYFTPYKDQIEMVGG----KPIILETYEEDGFQINVKK 154

Query: 141 VEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPY 200
           +EAL    T AI++ +P NP G VFS + L++IA+ A    + +I+DEVY+  +F    +
Sbjct: 155 LEALITSKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSF-YEDF 213

Query: 201 VPMGVFGSIVP-VITLGSISKRWIVPGWRLGWLVTSDPNGILQ-----NSGFVDSIKG-C 253
           VPM     +    IT GS SK + + GWR+G+++   P+ I++     N G   S     
Sbjct: 214 VPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIA--PDYIIETAKIINEGICFSAPTIS 271

Query: 254 LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGA 313
             AA + +      VP I +E             ++  +  Y+RI+ IP ++    P+G+
Sbjct: 272 QRAAIYALKHRDTIVPLIKEE------------FQKRLEYAYKRIESIPNLSL-HPPKGS 318

Query: 314 MFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLED 371
           ++  + +  + L      +EFC KL KE  V+++PG+  G   + ++R+A       LE+
Sbjct: 319 IYAFINIKKTGL----SSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACTVGIEVLEE 374

Query: 372 GLERI 376
              RI
Sbjct: 375 AFNRI 379

Length = 384

>gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated

 Score =  123 bits (312), Expect = 5e-32
 Identities = 92/352 (26%), Positives = 151/352 (42%), Gaps = 58/352 (16%)

Query: 51  GVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYP-L 109
           G P  +  +A      L   + PE++  T G + A  + L  L  PG +++   P Y  L
Sbjct: 63  GSPEFKEAVAS-----LYQNVKPENILQTNGATGANFLVLYALVEPGDHVISVYPTYQQL 117

Query: 110 YEIHAA-GSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ 168
           Y+I  + G+    E  ++ L  E  W  DLD +  L   NT  I I N  NP G +    
Sbjct: 118 YDIPESLGA----EVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRA 173

Query: 169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPV----ITLGSISKRWIV 224
           +L++I   AR++   V++DEVY  L          G   SI  +    I+  S+SK + +
Sbjct: 174 YLEEIVEIARSVDAYVLSDEVYRPLDED-------GSTPSIADLYEKGISTNSMSKTYSL 226

Query: 225 PGWRLGWLVTS-----------DPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVD 273
           PG R+GW+  +           D   I   +G  D +   L                   
Sbjct: 227 PGIRVGWIAANEEVIDILRKYRDYTMI--CAGVFDDMLASL-----------------AL 267

Query: 274 ETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLE 333
           E  +A   +   +++    I  E + + P ++  VKP+      VKL+V M        +
Sbjct: 268 EHRDAILERNRKIVRTNLAILDEWVAKEPRVSY-VKPKAVSTSFVKLDVDM-----PSED 321

Query: 334 FCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAK 385
           FCLKL KE  V+++PG    ++  +RI +  +  TL+ GL+++  F +    
Sbjct: 322 FCLKLLKETGVLLVPGNRFDLEGHVRIGYCCDTETLKKGLKKLSEFLREFDS 373

Length = 373

>gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

 Score =  125 bits (315), Expect = 7e-32
 Identities = 91/372 (24%), Positives = 154/372 (41%), Gaps = 40/372 (10%)

Query: 31  EDAVVDALRTAHYNC---YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE 87
             A+   LR    +    Y PT G+P  R  IA YL         PE + +T G  QA++
Sbjct: 110 RRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQALD 169

Query: 88  ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWE--VDLDGVEALA 145
           + L +L  PG  +L+  P YP       G+   LEA    ++P    E  +D + +E   
Sbjct: 170 LLLRLLLDPGDTVLVEDPTYP-------GALQALEALGARVIPVPVDEDGIDPEALEEAL 222

Query: 146 DENTVAIVIINP--GNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPM 203
            +     V + P   NP G   S +  + +   A    +++I D+ Y  L +   P  P+
Sbjct: 223 AQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPL 282

Query: 204 GVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPN--GILQNSGFVDSIKGCLNAASHPV 261
               +   VI LGS SK  + PG RLG++V        +L+     D           P 
Sbjct: 283 KALDAPGRVIYLGSFSKT-LAPGLRLGYVVAPPELIEKLLRLKQAAD---------LGPS 332

Query: 262 TFIQAAVPR-IVDETNEAFFAKIIGLLKETADICYERIKEI-PCITCPVKPQGAMFVMVK 319
           +  QAA+   ++    +    ++        D   E + E  P +    +P+G +F+ ++
Sbjct: 333 SLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLE 392

Query: 320 LNVSMLEDIGDDLEFCLKLAKEESVIILPG-----RTVGMKNWLRIAFA-AEPATLEDGL 373
           L   +     D  E  L  A E+ V++ P           +N LR++F+      +E+G+
Sbjct: 393 LPEGI-----DAREL-LAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGI 446

Query: 374 ERIKAFCQRHAK 385
           +R+ A  +  A 
Sbjct: 447 KRLAALLREAAA 458

Length = 459

>gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional

 Score =  122 bits (308), Expect = 2e-31
 Identities = 97/357 (27%), Positives = 163/357 (45%), Gaps = 31/357 (8%)

Query: 31  EDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIEIS 89
           ++A + A+R    N Y+   GVP     IA+   +D    + PE +V +T GC++AI  +
Sbjct: 73  KEAAIQAIRDGK-NQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAAT 131

Query: 90  LSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENT 149
           +  L  PG  +++  P Y  YE   + +   ++     L P   + V  D ++A     T
Sbjct: 132 ILGLINPGDEVILFAPFYDSYEATLSMAGAKIKT--VTLRPPD-FAVPEDELKAAFTSKT 188

Query: 150 VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF-GS 208
            AI+I  P NP G +F+ + L+ IA   +   ++   DEVY+ LAF    ++ M    G 
Sbjct: 189 RAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAF-EGDHISMASLPGM 247

Query: 209 IVPVITLGSISKRWIVPGWRLGWLVTSDPN---GILQNSGFVDSIKGCLNAASHPVTFIQ 265
               +T+ S+ K + + GW++GW + + P+   G+ Q   F+        A + P+ +  
Sbjct: 248 YERTVTMNSLGKTFSLTGWKIGWAI-APPHLTWGVRQAHSFLTF------ATATPMQWAA 300

Query: 266 AAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML 325
            A  R      E+++ ++        DI  E +KE+     P    G  FVMV       
Sbjct: 301 VAALR----APESYYEELKRDYSAKKDILVEGLKEVGFKVYP--SSGTYFVMVDHTPFGF 354

Query: 326 EDIGDDLEFCLKLAKEESVIILPGRTVGM-----KNWLRIAFAAEPATLEDGLERIK 377
           E   +D+ FC  L +E  V  +P     +     KN +R AF  +  TL   +ER+K
Sbjct: 355 E---NDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCKDEETLRAAVERMK 408

Length = 413

>gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional

 Score =  119 bits (299), Expect = 3e-30
 Identities = 93/365 (25%), Positives = 165/365 (45%), Gaps = 34/365 (9%)

Query: 30  AEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPED-VYLTLGCSQAIEI 88
           A +A+ + L     + Y    G+P     I   L +D   +L+ E  + +T G + A   
Sbjct: 45  AIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMN 104

Query: 89  SLSVLARPGANILIPRPGYPLYE--IHAAGSNNNLEARHYDLLP-EKRWEVDLDGVEALA 145
           ++  +  PG  I++  P Y  +E  I  AG           L+P +  +++  + +E   
Sbjct: 105 AILAITDPGDEIILNTPYYFNHEMAITMAGC-------QPILVPTDDNYQLQPEAIEQAI 157

Query: 146 DENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYV-PMG 204
              T AIV I+P NP G V+    L+ + +     GI  I+DE Y +  +    +  P  
Sbjct: 158 TPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGS 217

Query: 205 VFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV-DSIKGCLNAASHPVTF 263
           + GS    I+L S+SK +    WR+G++V   P  +L+    + D+I  C      PV  
Sbjct: 218 IPGSGNHTISLYSLSKAYGFASWRIGYMVI--PIHLLEAIKKIQDTILIC-----PPVVS 270

Query: 264 IQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVS 323
             AA+  +    +  +  + +  + +   I  + + ++          GA +  +K+N  
Sbjct: 271 QYAALGALQVGKS--YCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYCFLKVNTD 328

Query: 324 MLEDIGDDLEFCLKLAKEESVIILPGRTVGMKN--WLRIAFAA-EPATLEDGLER----I 376
           +     +D E   +L +E  V ++PG T GMKN  +LRIA+ A + AT ++G+ER    +
Sbjct: 329 L-----NDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERLVQGL 383

Query: 377 KAFCQ 381
           K   Q
Sbjct: 384 KTIVQ 388

Length = 389

>gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase; Validated

 Score =  117 bits (295), Expect = 1e-29
 Identities = 85/361 (23%), Positives = 165/361 (45%), Gaps = 45/361 (12%)

Query: 41  AHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPED-VYLTLGCSQAIEISLSVLARPGAN 99
           A+ + Y+   G+   R+  AD++        +PE+ + +T+G ++A+  SL+ +  PG  
Sbjct: 58  ANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAILEPGDK 117

Query: 100 ILIPRPGYPLYE-----IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVI 154
           +L+P P YP YE     + A     +     + L PE      L+       +   A+++
Sbjct: 118 VLLPAPAYPGYEPIVNLVGAEIVEIDTTENDFVLTPEM-----LEKAILEQGDKLKAVIL 172

Query: 155 INPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVP--V 212
             P NP G  +S + ++ +A   +   I VI+DEVY+ L +   P+V +  +   +P   
Sbjct: 173 NYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEY---LPDQT 229

Query: 213 ITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASH------PVTFIQ- 265
           I +  +SK   + GWR+G +             F   +       SH        T  Q 
Sbjct: 230 ILINGLSKSHAMTGWRIGLIFAPAE--------FTAQLI-----KSHQYLVTAATTMAQF 276

Query: 266 AAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML 325
           AAV  + +  ++A   K    +K   D   E++ ++      +KP GA ++  K+     
Sbjct: 277 AAVEALTNGKDDALPMK-KEYIKRR-DYIIEKMTDLGFKI--IKPDGAFYIFAKIPAGYN 332

Query: 326 EDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQRH 383
           +   D  +F    A++++V  +PG   G   + ++R+++AA   T+++ ++R+K + + H
Sbjct: 333 Q---DSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAASMETIKEAMKRLKEYMEEH 389

Query: 384 A 384
           A
Sbjct: 390 A 390

Length = 391

>gnl|CDD|180734 PRK06855, PRK06855, aminotransferase; Validated

 Score =  113 bits (286), Expect = 4e-28
 Identities = 85/293 (29%), Positives = 136/293 (46%), Gaps = 22/293 (7%)

Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRP 105
           Y PT GV   R  +A+  N+    +++P+D+    G   AI     +L R  A ++ P P
Sbjct: 69  YCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYGLL-RREARVIGPSP 127

Query: 106 GYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADEN--TVAIVIINPGNPCGN 163
            Y  +   A  ++       Y L PE  W  DLD +E     N     I++INP NP G 
Sbjct: 128 AYSTHSS-AEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILLINPDNPTGA 186

Query: 164 VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMG-VFGSIVPVITLGSISKRW 222
           V+  + L++I   AR   + +I DE+YN++ +     VP+  V G  VP I L  ISK  
Sbjct: 187 VYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGD-VPGIALKGISKEL 245

Query: 223 IVPGWRLGWL----VTSDPNGILQNSGFVDSIKGCLNAASHPV---TFIQAAVPRIVDET 275
             PG R GW+       D         +++SI   LNA    V   T  Q A+PRI+   
Sbjct: 246 PWPGSRCGWIEVYNADKDE----VFKKYINSI---LNAKMIEVCSTTLPQMAIPRIMSHP 298

Query: 276 N-EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLED 327
             + +  +     ++ ++I YE++K++P +    +  GA ++ V     +L +
Sbjct: 299 EYKNYLKERNKRYEKRSNIAYEKLKDVPGLKV-NRTNGAFYMTVVFEDGVLNN 350

Length = 433

>gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated

 Score =  110 bits (277), Expect = 4e-27
 Identities = 92/363 (25%), Positives = 153/363 (42%), Gaps = 40/363 (11%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIEISL 90
           +A  +A+     N Y P  G+P  R  IA    R    +  P+ +V +T+G ++AI  ++
Sbjct: 44  EAAQEAIAGGV-NQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAV 102

Query: 91  SVLARPGANILIPRPGYPLYE--IHAAGSNNNLEARHYDLLP-EKRWEVDLDGVEALADE 147
             L  PG  +L+  P Y  Y   I  AG+          L+P  + + +DLD + A    
Sbjct: 103 LGLVEPGDEVLLIEPYYDSYAAVIAMAGA----HRVPVPLVPDGRGFALDLDALRAAVTP 158

Query: 148 NTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF- 206
            T A+++ +P NP G V +   L  IA  A    ++VI DEVY HL F    ++P+    
Sbjct: 159 RTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLP 218

Query: 207 GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFI-- 264
           G     +T+ S +K + V GW++GW               + +++    AA   +T++  
Sbjct: 219 GMRERTVTISSAAKTFNVTGWKIGW-ACGPA-------PLIAAVR----AAKQYLTYVGG 266

Query: 265 ---QAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLN 321
              Q AV   +D   +A+ A +   L+   D     + E           G  F+    +
Sbjct: 267 APFQPAVAHALD-HEDAWVAALRDSLQAKRDRLAAGLAEAGFEVHD--SAGTYFLCA--D 321

Query: 322 VSMLEDIGDDLEFCLKLAKEESVIILPG------RTVGMKNWLRIAFAAEPATLEDGLER 375
              L    D  EFC  L +   V  +P             + +R AF     TL++ + R
Sbjct: 322 PRPLGY-DDGTEFCRALPERVGVAAIPMSVFYDPADAW-NHLVRFAFCKRDDTLDEAIRR 379

Query: 376 IKA 378
           ++A
Sbjct: 380 LRA 382

Length = 387

>gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional

 Score =  108 bits (272), Expect = 2e-26
 Identities = 84/343 (24%), Positives = 156/343 (45%), Gaps = 28/343 (8%)

Query: 43  YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILI 102
           +  Y+P  G+P  R  IA+Y  +     +  ++V +T G  +A  ++   L   G  ++I
Sbjct: 63  WTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVII 122

Query: 103 PRPGYPLYEIHAAGSNNNLEAR--HYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNP 160
           P P +  Y   A  +    EA+     L  E  ++ D D +  L  + T  IVI  P NP
Sbjct: 123 PDPAFVCYVEDAKIA----EAKPIRIPLREENEFQPDPDELLELITKRTRMIVINYPNNP 178

Query: 161 CGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVP--VITLGSI 218
            G     +  + IA  A +  I +++DE Y H  +    + PM  +    P   I   S 
Sbjct: 179 TGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYA---PDNTILANSF 235

Query: 219 SKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQ-AAVPRIVDETNE 277
           SK + + GWRLG+++   P  +++     D IK       +  +F+Q A +  +  + + 
Sbjct: 236 SKTFAMTGWRLGFVIA--PEQVIK-----DMIKLHAYIIGNVASFVQIAGIEALRSKESW 288

Query: 278 AFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLN-VSMLEDIGDDLEFCL 336
               ++     E   +  +R+KE+P I    +P+GA +V   ++   M  +     +F  
Sbjct: 289 KAVEEMRKEYNERRKLVLKRLKEMPHIK-VFEPKGAFYVFANIDETGMSSE-----DFAE 342

Query: 337 KLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIK 377
            L ++  V+++PG   G   + ++RI++A     L + +ER++
Sbjct: 343 WLLEKARVVVIPGTAFGKAGEGYIRISYATSKEKLIEAMERME 385

Length = 391

>gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated

 Score =  105 bits (263), Expect = 3e-25
 Identities = 92/358 (25%), Positives = 149/358 (41%), Gaps = 58/358 (16%)

Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRP 105
           Y+  LG+   R  IA +  R     ++PE + +T G S A+ ++   L   G  +L+P P
Sbjct: 63  YTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDP 122

Query: 106 GYPL--YEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGN 163
            YP   + + AA              P +R+++    VEA   E T  +++ +P NP G 
Sbjct: 123 SYPCNRHFVAAAEGR----PVLVPSGPAERFQLTAADVEAAWGERTRGVLLASPSNPTGT 178

Query: 164 VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWI 223
             +   L++I    R  G   I DE+Y  L++ + P   +   G    VIT+ S SK + 
Sbjct: 179 SIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALS-LGD--DVITINSFSKYFN 235

Query: 224 VPGWRLGWLVTSDP-----NGILQNSGFVDSIKGCLNA-ASHPVTFIQAAVPRIVDETNE 277
           + GWRLGWLV  +        + QN  F+     C +A A H      AA+         
Sbjct: 236 MTGWRLGWLVVPEALVGTFEKLAQNL-FI-----CASALAQH------AAL--------- 274

Query: 278 AFFAKIIGLLKETADICYERIKE--------IPC-----ITCPVKPQGAMFVMVKLNVSM 324
           A F        +T  I   R  E        +P         PV P GA +V        
Sbjct: 275 ACFE------PDTLAIYERRRAEFKRRRDFIVPALESLGFKVPVMPDGAFYVYADCRGVA 328

Query: 325 LEDIGDDLEFCLKLAKEESVIILPGRTVGM---KNWLRIAFAAEPATLEDGLERIKAF 379
               GD       +  +  V+++PGR  G    ++++R+++A   + LE+ + R+   
Sbjct: 329 HPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYATSMSRLEEAVARLGKL 386

Length = 388

>gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional

 Score =  104 bits (262), Expect = 5e-25
 Identities = 91/368 (24%), Positives = 149/368 (40%), Gaps = 59/368 (16%)

Query: 37  ALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARP 96
           AL   H   Y+   G+P+ R  IA +  +     + PE + +T G S A+ ++ S+L  P
Sbjct: 57  ALAAGHTR-YTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDP 115

Query: 97  GANILIPRPGYPLYEIHAAGSNNNL------EARHYDLLPEKRWEVDLDGVEALADENTV 150
           G + L+  PGYP         N +        A+   + P+ R+++    VE   + +TV
Sbjct: 116 GKHWLLADPGYP--------CNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNADTV 167

Query: 151 AIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIV 210
             ++ +P NP G + S   L  +++  R  G  ++ DE+Y+ L +G      + V     
Sbjct: 168 GALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEVDDDAF 227

Query: 211 PVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPR 270
               L S SK + + GWRLGWLV             V  ++     A +   +I A+ P 
Sbjct: 228 ---VLNSFSKYFGMTGWRLGWLVAPP--------AAVPELE---KLAQN--LYISASTP- 270

Query: 271 IVDETNEAFFAKIIGLLKETADICYERIKE--------IPCIT-----CPVKPQGAMFVM 317
                  A  A +     ET  I   R  E        +P +        V+PQGA ++ 
Sbjct: 271 -------AQHAALACFEPETLAILEARRAEFARRRDFLLPALRELGFGIAVEPQGAFYLY 323

Query: 318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM---KNWLRIAFAAEPATLEDGLE 374
              ++S      D   FC    + E V   PG   G       +R A+      L++ +E
Sbjct: 324 A--DISAFGG--DAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQSLPRLQEAVE 379

Query: 375 RIKAFCQR 382
           RI    + 
Sbjct: 380 RIARGLRS 387

Length = 387

>gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional

 Score =  103 bits (260), Expect = 1e-24
 Identities = 101/366 (27%), Positives = 162/366 (44%), Gaps = 38/366 (10%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIEISL 90
            A  DAL     N Y P +G+P  R+ +A +  R     L PE +V +T G ++A+  +L
Sbjct: 46  RAAADALLDG-SNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAAL 104

Query: 91  SVLARPGANILIPRPGYPLYE--IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADEN 148
             L  PG  +++ +P Y  Y   I  AG       R   L P   W +    + A     
Sbjct: 105 LALVEPGDEVVLFQPLYDAYLPLIRRAGG----VPRLVRLEP-PHWRLPRAALAAAFSPR 159

Query: 149 TVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFG 207
           T A+++ NP NP G VF  + L  +A   +    + I DEV+ H+ F    ++P M + G
Sbjct: 160 TKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPG 219

Query: 208 SIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTF---- 263
                + +GS  K + + GW++G+ V + P            +   L  A   +TF    
Sbjct: 220 MRERTVKIGSAGKIFSLTGWKVGF-VCAAP-----------PLLRVLAKAHQFLTFTTPP 267

Query: 264 -IQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKP-QGAMFVMVKLN 321
            +QAAV   + +  + +F  +   L  + D     ++    I  PV P QG  F+ V L 
Sbjct: 268 NLQAAVAYGLGK-PDDYFEGMRADLARSRDRLAAGLRR---IGFPVLPSQGTYFLTVDLA 323

Query: 322 VSMLEDIGDDLEFCLKLAKEESVIILPGRTV----GMKNWLRIAFAAEPATLEDGLERIK 377
              L    DD+ FC +L +E  V  +P         + + +R  FA   ATL++ +ER+ 
Sbjct: 324 PLGLA--EDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAKRDATLDEAVERLA 381

Query: 378 AFCQRH 383
           A  +R 
Sbjct: 382 AARRRR 387

Length = 387

>gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated

 Score =  103 bits (258), Expect = 2e-24
 Identities = 86/367 (23%), Positives = 155/367 (42%), Gaps = 56/367 (15%)

Query: 40  TAHYNCYSPTLGVPSARRGIADYLNR--DLPYKLSPEDVYLTLGCSQAIEISLSVLARPG 97
           T +Y  Y+   G+   R+   +++    DL Y    E + +T+G S+AI+I+   +  PG
Sbjct: 55  TENYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESE-IIVTIGASEAIDIAFRTILEPG 113

Query: 98  ANILIPRPGYPLYE----------IHAAGSNNN--LEARHYDLLPEKRWEVDLDGVEALA 145
             +++P P YP YE          +     +    L A                 +E   
Sbjct: 114 TEVILPAPIYPGYEPIIRLCGAKPVFIDTRSTGFRLTAEA---------------LENAI 158

Query: 146 DENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV 205
            E T  +V+  P NP G   S + LQ IA   ++  I V++DE+Y+ L +          
Sbjct: 159 TEKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHF 218

Query: 206 FGSIVPVITLGSISKRWIVPGWRLGWLVTSDP--NGILQNSGFVDSIKGCLNAASHPVTF 263
                  I +  +SK   + GWR+G+L         IL+   +  +   C ++ S     
Sbjct: 219 PEMREKTIVINGLSKSHSMTGWRIGFLFAPSYLAKHILKVHQYNVT---CASSISQ---- 271

Query: 264 IQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFV---MVKL 320
             AA+  +    ++A   +     K+  D  Y R+  +       KP GA ++   +   
Sbjct: 272 -YAALEALTAGKDDAKMMR--HQYKKRRDYVYNRLISMGLDV--EKPTGAFYLFPSIGHF 326

Query: 321 NVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKA 378
            +S         +F L L +E  + ++PG       + ++R+++A    TL++GL+R++A
Sbjct: 327 TMS-------SFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAYSIETLKEGLDRLEA 379

Query: 379 FCQRHAK 385
           F Q+ AK
Sbjct: 380 FLQQKAK 386

Length = 387

>gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional

 Score =  102 bits (257), Expect = 3e-24
 Identities = 80/358 (22%), Positives = 152/358 (42%), Gaps = 44/358 (12%)

Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRP 105
           Y+   G P+ R+ I   L R      +  ++ +  G  QAI ++L      G  ++IP P
Sbjct: 66  YTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAP 125

Query: 106 ---GYPLYEIHAAGSNNNL---EARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGN 159
               YP   +   G+   +   E + + L PE         +EA     T  +++  P N
Sbjct: 126 YWVSYPDMVLANDGTPVIVACPEEQGFKLTPEA--------LEAAITPRTRWLILNAPSN 177

Query: 160 PCGNVFSYQHLQKIART-ARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVP-----VI 213
           P G V+S   L+ +A    R+  ++V+ D++Y+H+ F      P     +  P     V+
Sbjct: 178 PTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDE---PTPHLLAAAPELRDRVL 234

Query: 214 TLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIV 272
               +SK + + GWR+G+            +  + +I    + ++S P +  QAA    +
Sbjct: 235 VTNGVSKTYAMTGWRIGYAAG--------PADLIAAINKLQSQSSSCPSSISQAAAAAAL 286

Query: 273 DETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML------- 325
           +  +++F  + + + K+  D     +  IP ++C + P GA ++ V  N + L       
Sbjct: 287 N-GDQSFVTESVAVYKQRRDYALALLNAIPGLSC-LVPDGAFYLYV--NCAGLIGKTTPE 342

Query: 326 -EDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQR 382
            + +  D +  L L     V ++ G   G+  + R++ A    TLE+   RI+     
Sbjct: 343 GKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIATSLETLEEACARIERAVAA 400

Length = 402

>gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase

 Score =  100 bits (250), Expect = 1e-23
 Identities = 81/339 (23%), Positives = 134/339 (39%), Gaps = 34/339 (10%)

Query: 47  SPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPG 106
            P+LG    R  IAD   R          V  T G S+AI + L+ L RPG  +++  P 
Sbjct: 48  GPSLGGEGLRAAIADRW-RGGD----AHVVMTTHGSSEAIYLVLTALLRPGDEVVVVDPA 102

Query: 107 YPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFS 166
           Y  + +         E R + LL  + +  DLD + AL    T A+V+  P NP G   +
Sbjct: 103 Y--HSLSHLAVATGCEVRPWPLLAVRGFRPDLDALRALLTPRTRAVVVNFPHNPTGASVT 160

Query: 167 YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPG 226
            + L ++   A   G +++ D  +  L   + P            VI+ G++SK + +PG
Sbjct: 161 PRELDELLERAARSGAVLLWDNAFADLVHDAPPLPDPSALYD--RVISFGTLSKAFGLPG 218

Query: 227 WRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVT-FIQAAVPRIVDETNEAFFAKIIG 285
            R+GW V   P  +L     +  ++     +  P+   +        D         +IG
Sbjct: 219 LRVGWCVG--PADLLAE---LVRLRDYTTLSLSPLVELLAEVAVEHADA--------LIG 265

Query: 286 LLKETADICYERIKEIPC-----ITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAK 340
                A     R+ +        + C   P+G +    +          D  + C +L  
Sbjct: 266 PRLAEARANRRRLLDWAAAHPDVVRCTP-PEGGVAAFPR-----FPGHADVTDLCRRLLA 319

Query: 341 EESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAF 379
              V+++PG   G  + +R+ F    A L  GL R+ AF
Sbjct: 320 RHGVLLVPGSCFGAADRMRLGFGGSSAELRAGLARLSAF 358

Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359

>gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated

 Score = 97.5 bits (243), Expect = 1e-22
 Identities = 87/359 (24%), Positives = 147/359 (40%), Gaps = 51/359 (14%)

Query: 43  YNCYSPTLGVPSARRGIADYLNRDLPYKLSPED-VYLTLGCSQAIEISLSVLARPGANIL 101
           Y  Y+   G+   R+ IA YL +       P D + +T+G SQA+++++  +  PG  +L
Sbjct: 50  YTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAIINPGDEVL 109

Query: 102 IPRPGYPLYE--IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGN 159
           I  P +  Y   +  AG              E  ++V    +EA     T AI++ +P N
Sbjct: 110 IVEPSFVSYAPLVTLAGG----VPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNN 165

Query: 160 PCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMG-VFGSIVPVITLGSI 218
           P G V +   L++IA       +IV++DE+Y  L +    Y     + G     I +   
Sbjct: 166 PTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTY-DEAYTSFASIKGMRERTILISGF 224

Query: 219 SKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEA 278
           SK + + GWRL               GF+ +      A      +     P +      A
Sbjct: 225 SKGFAMTGWRL---------------GFIAAPVYFSEAMLKIHQYSMMCAPTM------A 263

Query: 279 FFAKIIGLLKETADI-----CYER--------IKEIPCITCPVKPQGAMFVMVKLNVSML 325
            FA +  L     D+      Y +          EI  +TC V P GA +    ++ + L
Sbjct: 264 QFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEIG-LTCHV-PGGAFYAFPSISSTGL 321

Query: 326 EDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQR 382
                  EF  +L  EE V ++PG   G   + ++R ++A     L++ ++R+K F + 
Sbjct: 322 SS----EEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYATSLEQLQEAMKRMKRFVEN 376

Length = 378

>gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

 Score = 96.2 bits (240), Expect = 3e-22
 Identities = 69/339 (20%), Positives = 140/339 (41%), Gaps = 39/339 (11%)

Query: 24  LSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCS 83
                   +A+  AL   +   Y         R  +A+Y        + PE+V +  G  
Sbjct: 34  YGPPPKVIEAIRAALDKLNR--YPDP-DYRELRAALAEYYG-----VVDPENVLVGNGSD 85

Query: 84  QAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEA 143
           + IE+ +     PG  +LIP P + +YEI A  +   +       +P K + +DLD + A
Sbjct: 86  ELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQLAGAEVVK-----VPLKEFRLDLDAILA 140

Query: 144 LADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPM 203
              + T  + + NP NP G +   + L+ +       G++VI DE Y    F     + +
Sbjct: 141 AIRDKTKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVI-DEAYIE--FSPESSLEL 197

Query: 204 GVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTF 263
             +     +I L + SK + + G R+G+ + +      +    ++ ++   N +S  +  
Sbjct: 198 LKYPP--NLIVLRTFSKAFGLAGLRVGYAIANP-----ELIAALNKVRPPFNVSSPALAA 250

Query: 264 IQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVS 323
             AA+       +  +  + +  ++E  +  Y  +K +      V P  A FV+V++  +
Sbjct: 251 AIAAL------RDADYLEESVERIREERERLYAALKALGLF--GVFPSQANFVLVRVPDA 302

Query: 324 MLEDIGDDLEFCLKLAKEESVIILPGRTVGM-KNWLRIA 361
               + + L        ++ +++    +VG+   +LRI 
Sbjct: 303 EAAALAEAL-------LKKGILVRDCSSVGLLPGYLRIT 334

Length = 356

>gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

 Score = 95.4 bits (238), Expect = 9e-22
 Identities = 92/361 (25%), Positives = 157/361 (43%), Gaps = 33/361 (9%)

Query: 32  DAVVDALRTA-HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISL 90
             +++ALR    +  +    G       IA +  +   +++ PE +    G    I +++
Sbjct: 41  PEIIEALRERVDHGVFGYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAI 100

Query: 91  SVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPE-KRWEVDLDGVE-ALADEN 148
             L +PG  ++I  P YP    + A   N  +     L+ +  R+E+D D +E A  DE 
Sbjct: 101 RALTKPGDGVVIQTPVYP--PFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDER 158

Query: 149 TVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS 208
               ++ NP NP G V++ + L+KIA      G+ VI+DE++  L  G   ++P      
Sbjct: 159 VKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSE 218

Query: 209 IVP--VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTF-IQ 265
                 ITL S SK + + G +  +++ S+     +   F+  +K   N    P    I 
Sbjct: 219 RFADNSITLTSASKTFNLAGLKCAYIIISNRELRAK---FLKRLKR--NGLHGPSALGII 273

Query: 266 AAVPRIVDETNEAFFAKIIGLLKETADICYERI-KEIPCITCPVKPQGAMFVMV-----K 319
           A          E +  +++  LK+  D   + + K +P +    +PQG     +      
Sbjct: 274 AT--EAAYNQGEPWLDELLEYLKDNRDYVADFLNKHLPGVKV-TEPQGTYLAWLDCRELG 330

Query: 320 LNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIK 377
           L+ S L       EF L+ AK   V + PG T G     ++R+ FA   A LE+ LER+K
Sbjct: 331 LDDSELA------EFLLEEAK---VALSPGSTFGEEGSGFVRLNFACPRAILEEALERLK 381

Query: 378 A 378
            
Sbjct: 382 R 382

Length = 388

>gnl|CDD|234249 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase

 Score = 93.6 bits (233), Expect = 4e-21
 Identities = 99/379 (26%), Positives = 154/379 (40%), Gaps = 63/379 (16%)

Query: 34  VVDALRT--AHYNCYSPTLGVPSARRGIADYLNR--DLPYKLSPEDVYL-TLGCSQAI-E 87
           V++ALR      + Y  T G+P  R+ IA +L R  DLP  + PE   L   G  +A+  
Sbjct: 46  VLEALRENLHGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFA 105

Query: 88  ISLSVLARPG-ANILIPRPGYPLYEIHA--AGSNNNLEARHYDLLPEKRWEVDLDGVEAL 144
            + +V+       +++P P Y +YE  A  AG+    E    +   E  +  D D V   
Sbjct: 106 FAQAVINPGQAPLVVMPNPFYQIYEGAALLAGA----EPYFLNCTAENGFLPDFDAVPES 161

Query: 145 ADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAF-GSTPYVPM 203
                  + + +PGNP G V S   L+K+   A   G I+ +DE Y+ L F    P  P 
Sbjct: 162 VWRRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNP--PA 219

Query: 204 GVF--------GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLN 255
           G+               +   S+SKR  +PG R G+ V  D   IL+      +  GC  
Sbjct: 220 GLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGF-VAGDAE-ILKAFLRYRTYHGC-- 275

Query: 256 AASHPVTFIQAAVPRIVDET----NEAFFAKIIGLLKETADICYERIKEI--PCITCPVK 309
             + P+    A++    DE     N A + +            +  + EI    +     
Sbjct: 276 --AMPIPTQLASIAAWNDEQHVRENRALYREK-----------FAAVLEILGQVLDLE-L 321

Query: 310 PQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--------KNWLRIA 361
           P    ++  K+        GDD  F   L +EE+V +LPGR +          +  +RIA
Sbjct: 322 PDAGFYLWPKVP-------GDDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIA 374

Query: 362 FAAEPATLEDGLERIKAFC 380
             A      +  ERI++F 
Sbjct: 375 LVAPLEECVEAAERIRSFI 393

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 393

>gnl|CDD|177876 PLN02231, PLN02231, alanine transaminase

 Score = 93.5 bits (232), Expect = 1e-20
 Identities = 84/340 (24%), Positives = 151/340 (44%), Gaps = 40/340 (11%)

Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGAN-ILIPR 104
           YS + G+   R  IA  +     +   P D++LT G S A+ + + +L R   + IL P 
Sbjct: 164 YSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPI 223

Query: 105 PGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEA-LADENTV-----AIVIINPG 158
           P YPLY    A     L    Y L     W +++  ++  L D  +      A+V+INPG
Sbjct: 224 PQYPLYSASIALHGGTLVP--YYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPG 281

Query: 159 NPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSI--------- 209
           NP G V + ++ + I    +  G++++ADEVY         YVP   F S          
Sbjct: 282 NPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQE-----NVYVPDKKFHSFKKVARSMGY 336

Query: 210 ----VPVITLGSISKRWIVP-GWRLGWL-VTSDPNGILQNSGFVDSIKGCLNAASHPVTF 263
               + +++  S+SK +    G R G++ VT   + + +    V S+  C N +   +  
Sbjct: 337 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVASVNLCSNISGQILAS 396

Query: 264 IQAAVPRIVDETNEAFFAK---IIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKL 320
           +  + P+  DE+ E++ A+   I+  L   A    + +  +  +TC  K +GAM++  ++
Sbjct: 397 LVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTCN-KAEGAMYLFPRI 455

Query: 321 NVSM-------LEDIGDDLEFCLKLAKEESVIILPGRTVG 353
           ++               D  +C +L     ++++PG   G
Sbjct: 456 HLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFG 495

Length = 534

>gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase

 Score = 91.6 bits (228), Expect = 1e-20
 Identities = 73/347 (21%), Positives = 136/347 (39%), Gaps = 69/347 (19%)

Query: 30  AEDAVVDALRTAH-Y-NCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE 87
           A++A+       H Y +     L     ++ +ADY        + PE + L  G  + IE
Sbjct: 37  AKEALRAEADKLHRYPDPDPAEL-----KQALADYYG------VDPEQILLGNGSDEIIE 85

Query: 88  ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE 147
           + +     PG  +L+P P Y +YEI A    +  E     L  +   ++DL+ +    D+
Sbjct: 86  LLIRAFLEPGDAVLVPPPTYSMYEISAKI--HGAEVVKVPLDED--GQLDLEDILVAIDD 141

Query: 148 NTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFG 207
               + + +P NP GN+ S   ++ +        ++V+ DE Y    F   P        
Sbjct: 142 KPKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVV-DEAYGE--FSGEP-------- 190

Query: 208 SIVP-------VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHP 260
           S +P       +I L ++SK + + G R+G+ + ++   I             LN    P
Sbjct: 191 STLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAI-ANAEIIDA-----------LNKVRAP 238

Query: 261 VTFIQAAVPRIVDET------NEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAM 314
                  + R+          ++ F  K +  +    +  Y+ +K++P +   V P  A 
Sbjct: 239 F-----NLSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKLPGLE--VYPSDAN 291

Query: 315 FVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILP-GRTVGMKNWLRI 360
           FV+++          D      +   E+ +I+       G+ N LRI
Sbjct: 292 FVLIRFP-------RDADALF-EALLEKGIIVRDLNSYPGLPNCLRI 330

Alternate names: histidinol-phosphate transaminase; imidazole acetol-phosphate transaminase Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme [Amino acid biosynthesis, Histidine family]. Length = 346

>gnl|CDD|181026 PRK07550, PRK07550, hypothetical protein; Provisional

 Score = 90.0 bits (224), Expect = 6e-20
 Identities = 69/240 (28%), Positives = 103/240 (42%), Gaps = 38/240 (15%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLS 91
            A+ +A      + Y P  G+P  R   A + +R     +SPE V++T GC+QA   ++ 
Sbjct: 49  RALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMV 108

Query: 92  VLARPGANILIPRPGY-------------PLYEIHAAGSNNNLEARHYDLLPEKRWEVDL 138
            LA  G  +++P P Y             P+Y     G           LLP      D 
Sbjct: 109 TLAGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGP---------GLLP------DP 153

Query: 139 DGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGST 198
              EAL    T AI ++ P NP G V+  + L ++   AR  GI +I DE Y     G  
Sbjct: 154 AAAEALITPRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGG 213

Query: 199 PYVPMGVFGSIVP-----VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGC 253
              P  +F    P     ++ L S SK + + G R+G +V S P  I +   F+D++  C
Sbjct: 214 A--PHDLFAD--PDWDDTLVHLYSFSKSYALTGHRVGAVVAS-PARIAEIEKFMDTVAIC 268

Length = 386

>gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase

 Score = 86.7 bits (215), Expect = 8e-19
 Identities = 97/365 (26%), Positives = 152/365 (41%), Gaps = 43/365 (11%)

Query: 32  DAVVDALRTAHYNC----YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTL-GCSQAI 86
             +V+AL  A  N     Y    G+ + R+ +AD+  R    +L PE   L+L G  + I
Sbjct: 45  KHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGI 104

Query: 87  EISLSVLARPGANILIPRPGYPLYEIHA--AGSNNNLEARHYDLLPEKRWEVDLDGVEAL 144
                    PG  +L+P PGYP+Y I    AG     E     L  E  +  D D +   
Sbjct: 105 AHIPLAFVNPGDIVLVPDPGYPVYRIGTLFAGG----EPYEMPLKEENGFLPDFDAI--- 157

Query: 145 ADENTVA---IVIIN-PGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAF-GSTP 199
             E+      ++ IN P NP G V   +  +++   A+   IIV  D  Y+ + F G   
Sbjct: 158 -PEDIAKKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKA 216

Query: 200 YVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDP--NGILQNSGFVDSIKGCLNAA 257
              + V G+    I   S+SK + + GWR+G  V +     G+ +    VDS  G   A 
Sbjct: 217 PSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGNADLIAGLGKVKTNVDS--GVFQA- 273

Query: 258 SHPVTFIQAAVPRIVD-ETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFV 316
                 IQ A   I      +    +I  + +   D+  E +K+I  I    KP+   +V
Sbjct: 274 ------IQYAA--IAALNGPQDVVKEIRKIYQRRRDLLLEALKKIG-IDV-EKPKATFYV 323

Query: 317 MVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLE 374
            V      + +     EF  +L +E  V++ PG   G   + ++RI+       LE+ + 
Sbjct: 324 WVP-----VPEGYTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTVPDERLEEAVA 378

Query: 375 RIKAF 379
           RIK  
Sbjct: 379 RIKKL 383

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia and the clade containing the Chlamydia gene is a neighboring one in the same pfam00155 superfamily so it seems quite reasonable that these enzymes catalyze the same transformation. Length = 383

>gnl|CDD|180281 PRK05839, PRK05839, hypothetical protein; Provisional

 Score = 86.3 bits (214), Expect = 1e-18
 Identities = 97/365 (26%), Positives = 147/365 (40%), Gaps = 52/365 (14%)

Query: 36  DALR-TAHY-NCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI-EISLSV 92
           DAL+  AH  N Y  + G  S R     +  R    +L   ++  T G  + +      V
Sbjct: 44  DALKNNAHLLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQFV 103

Query: 93  LAR-PGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVE-ALADENTV 150
           L       I  P P Y +YE  A  S    +     L  E  +   L+  E    D    
Sbjct: 104 LFDKQNPTIAYPNPFYQIYEGAAIASRA--KVLLMPLTKENDFTPSLNEKELQEVD---- 157

Query: 151 AIVIIN-PGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTP--------YV 201
            +VI+N P NP G   S + L +  + A     I+I DE Y+ +   + P         V
Sbjct: 158 -LVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILV 216

Query: 202 PMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPV 261
               F ++   + + SISKR   PG R G+ +  D + IL+      +  GC   AS P+
Sbjct: 217 GNESFKNV---LVINSISKRSSAPGLRSGF-IAGDAS-ILKKYKAYRTYLGC---AS-PL 267

Query: 262 TFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLN 321
              +AA    +D+ +  FF  I     + A       +EI  IT    P    +V +   
Sbjct: 268 PLQKAAAVAWLDDEHAEFFRNIYAKNLKLA-------REILGIT---IPPATFYVWLP-- 315

Query: 322 VSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM----KNWLRIAFAAEPATLEDGLERIK 377
                 + +D EF  KL + E + +LPG  +G     K ++RIA   +   LE  LE IK
Sbjct: 316 ------VDNDEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVYDTPKLEKALEIIK 369

Query: 378 AFCQR 382
            + + 
Sbjct: 370 TYLEN 374

Length = 374

>gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional

 Score = 82.5 bits (204), Expect = 2e-17
 Identities = 56/234 (23%), Positives = 97/234 (41%), Gaps = 31/234 (13%)

Query: 6   GQETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNR 65
           GQ T H            L       +A++  +    Y  Y P  G P  R  I   L  
Sbjct: 34  GQNTNH------------LGPHEEVREAMIRCIEEGEYCKYPPPEGFPELRELILKDLG- 80

Query: 66  DLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNL-EAR 124
                L  ++  +T G ++++ + +     PG N + P PGY + +  A+     + E  
Sbjct: 81  -----LDDDEALITAGATESLYLVMRAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVP 135

Query: 125 HYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIV 184
            Y    E  +++  + V+   DENT  I +I+P NP G+ ++ + +++ A  AR+    +
Sbjct: 136 IYS--EECNYKLTPELVKENMDENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFL 193

Query: 185 IADEVYNHLAFGSTP---YVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTS 235
           + D  Y   A   T    Y P          +T  S SK + + G R+G +V +
Sbjct: 194 LHDCTYRDFAREHTLAAEYAPEH-------TVTSYSFSKIFGMAGLRIGAVVAT 240

Length = 380

>gnl|CDD|177996 PLN02368, PLN02368, alanine transaminase

 Score = 81.8 bits (202), Expect = 5e-17
 Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 18/184 (9%)

Query: 23  LLSDSTVAEDAVVDAL-RTAHY--------NCYSPTLGVPSARRGIADYLNRDLPYKLSP 73
           LL D  V      DA+ R  HY          YS + G+P  R+ +A+++ R   Y   P
Sbjct: 71  LLDDPNVGLLFPADAIARAKHYLSLTSGGLGAYSDSRGLPGVRKEVAEFIERRDGYPSDP 130

Query: 74  EDVYLTLGCSQAIEISLSVLAR-PGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEK 132
           E ++LT G S+ +   L+ + R     +L+P P YPLY    +     L    Y L   +
Sbjct: 131 ELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSATISLLGGTLVP--YYLEESE 188

Query: 133 RWEVDLDGV-----EALADENTV-AIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIA 186
            W +D++ +     +A +   TV A+VIINPGNP G   S  +L++I +      ++++ 
Sbjct: 189 NWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLG 248

Query: 187 DEVY 190
           DEVY
Sbjct: 249 DEVY 252

Length = 407

>gnl|CDD|213963 TIGR04350, C_S_lyase_PatB, putative C-S lyase

 Score = 80.8 bits (200), Expect = 9e-17
 Identities = 80/377 (21%), Positives = 150/377 (39%), Gaps = 56/377 (14%)

Query: 30  AEDAVVDAL--RTAHYNCYSPTLGVP----SARRGIADYLNRDLPYKLSPEDVYLTLGCS 83
              AV++AL  R  H     P  G      S    + ++L +   +++ PE +    G  
Sbjct: 39  TPPAVLEALKQRLEH-----PVFGYTLPPDSLYAAVINWLAQRHGWQIDPEWIVFLPGVV 93

Query: 84  QAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLP----EKRWEVDLD 139
            ++  ++  L  PG  +++  P YP + + A  SN     R   L P      R+  DL+
Sbjct: 94  PSLFAAVRALTAPGEGVIVQTPVYPPF-LSAVKSNG----RELVLNPLKLDPGRYRFDLE 148

Query: 140 GVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTP 199
            +E    E    +++ +P NP G V++ + L ++A       ++V++DE++  L +    
Sbjct: 149 DLEDAITEKARLLLLCSPHNPVGRVWTREELTRLAELCLRHNVVVVSDEIHADLVYPPNK 208

Query: 200 YVPMGVFGSIVP-----VITLGSISKRWIVPGWRLGWLVTSDP------NGILQNSGFVD 248
           ++P     S+ P      +TL S  K + + G  + + +  +P          Q      
Sbjct: 209 HIP---LASLSPEIAERTVTLLSPGKTFNIAGLNISFAIIPNPELRRAFQEAAQRVHIQH 265

Query: 249 SIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERI-KEIPCITCP 307
                 N   +     +AA         E +   ++  L+   D+  E I K +P I   
Sbjct: 266 -----GNLFGY--VAFEAAYRE-----GEPWLDALLAYLRGNRDLVEEFIAKRLPQIRV- 312

Query: 308 VKPQGAMFVMVKLNVSMLEDIGDDL-EFCLKLAKEESVIILPGRTVGM--KNWLRIAFAA 364
             P+     +  L+   L     DL  F ++ A    + + PG + G     ++R+ F  
Sbjct: 313 RPPEATY--LAWLDCRALGLDDADLRAFFIEQAG---LGLNPGISFGDGGSGFMRLNFGC 367

Query: 365 EPATLEDGLERIKAFCQ 381
             +TLE  LER++    
Sbjct: 368 PRSTLEQALERLRQALA 384

Members of this subfamily are probable C-S lyases from a family of pyridoxal phosphate-dependent enzymes that tend to be (mis)annotated as probable aminotransferases. One member is PatB of Bacillus subtilis, a proven C-S-lyase. Another is the virulence factor cystalysin from Treponema denticola, whose hemolysin activity may stem from H2S production. Members of the seed alignment occur next to examples of the enzyme 5-histidylcysteine sulfoxide synthase, from ovothiol A biosynthesis, and would be expected to perform a C-S cleavage of 5-histidylcysteine sulfoxide to leave 1-methyl-4-mercaptohistidine (ovothiol A). Length = 384

>gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional

 Score = 81.0 bits (200), Expect = 9e-17
 Identities = 89/368 (24%), Positives = 148/368 (40%), Gaps = 52/368 (14%)

Query: 32  DAVVDALRTAHY----NCYSPTL-GVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI 86
           D V + +   H       Y  TL G+      + +Y N      L+ +   L L  SQ  
Sbjct: 48  DFVREEM--VHTANQKESYGYTLSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDG 105

Query: 87  EISLS-VLARPGANILIPRPGYPLYE--IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEA 143
            + L  V A PG  IL+P PGY  YE  I  AG+     + +  L  E  +  DL   E 
Sbjct: 106 LVHLPMVYANPGDIILVPDPGYTAYETGIQMAGA----TSYYMPLKKENDFLPDL---EL 158

Query: 144 LADE--NTVAIVIIN-PGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAF-GSTP 199
           + +E  +   ++I+N PGNP   +      +++   A+   IIV+ D  Y    F G+ P
Sbjct: 159 IPEEIADKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKP 218

Query: 200 YVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASH 259
              + V G+    + + S+SK + + G R+G+++           G  + ++      S+
Sbjct: 219 ISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMI-----------GNEEIVRALTQFKSN 267

Query: 260 -------PVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQG 312
                  P+     A  R       AF  K  G+ +E  D   +  +         KP G
Sbjct: 268 TDYGVFLPIQKAACAALR----NGAAFCEKNRGIYQERRDTLVDGFRTFGWNV--DKPAG 321

Query: 313 AMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLE 370
           +MFV  +     +      L F   L    +V++ PG   G   + ++RIA   +   L+
Sbjct: 322 SMFVWAE-----IPKGWTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQDEEVLQ 376

Query: 371 DGLERIKA 378
             +E I+ 
Sbjct: 377 QAVENIRN 384

Length = 399

>gnl|CDD|236393 PRK09147, PRK09147, succinyldiaminopimelate transaminase; Provisional

 Score = 79.9 bits (198), Expect = 2e-16
 Identities = 104/399 (26%), Positives = 151/399 (37%), Gaps = 99/399 (24%)

Query: 32  DAVVDAL-RTAHYNCYSP-TLGVPSARRGIADYLNR--DLPYKLSPEDVYL-TLGCSQAI 86
           DA+   L   A Y    P T G+P+ R  IA +L R   LP  L P    L   G  +A+
Sbjct: 49  DALAANLDGLASY----PTTAGLPALREAIAAWLERRYGLP-ALDPATQVLPVNGSREAL 103

Query: 87  -EISLSVLAR--PGANILIPRPGYPLYEIHA--AGSNNNLEARHYDLLPEKRWEVDLDGV 141
              + +V+ R  PG  ++ P P Y +YE  A  AG+    E    +  P   +  D D V
Sbjct: 104 FAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGA----EPYFLNCDPANNFAPDFDAV 159

Query: 142 EALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAF-GSTPY 200
            A     T  + + +PGNP G V      +K+   +   G ++ +DE Y+ + F  + P 
Sbjct: 160 PAEVWARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAP- 218

Query: 201 VPMGVF--------GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV----D 248
            P+G+              ++   S+SKR  VPG R               SGFV     
Sbjct: 219 -PLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLR---------------SGFVAGDAA 262

Query: 249 SIKGCL------NAASHPVTFIQAAVPRIV---DET----NEAF----FAKIIGLLKETA 291
            +K  L        A  P    QAA   I    DE     N A     F  +  +L    
Sbjct: 263 LLKKFLLYRTYHGCAMPPAV--QAA--SIAAWNDEAHVRENRALYREKFDAVTPILAPVL 318

Query: 292 DICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRT 351
           D+                P    ++  K+        GDD EF  +L  + +V +LPG  
Sbjct: 319 DV--------------QLPDAGFYLWAKVP-------GDDTEFARRLYADYNVTVLPGSY 357

Query: 352 VGM--------KNWLRIAFAAEPATLEDGLERIKAFCQR 382
           +             +RIA  A  A   +  ERI  FC+ 
Sbjct: 358 LAREAHGVNPGAGRVRIALVAPLAECVEAAERIVDFCRS 396

Length = 396

>gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional

 Score = 79.1 bits (195), Expect = 4e-16
 Identities = 57/209 (27%), Positives = 95/209 (45%), Gaps = 16/209 (7%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSP-EDVYLTLGCSQAIEISL 90
           + V  A+R  H N Y+P  G+ + R  +A+   R    +  P  +V +    S+ +  ++
Sbjct: 49  EGVARAMRDGH-NQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAI 107

Query: 91  SVLARPGANILIPRPGY----PLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD 146
           S L  PG  ++   P +    P+  +  A            L PE  + V+ D V A   
Sbjct: 108 SALVHPGDEVIYFEPSFDSYAPIVRLQGA------TPVAIKLSPE-DFRVNWDEVAAAIT 160

Query: 147 ENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF 206
             T  I++  P NP   VFS   L ++A+  RN  I++++DEVY H+ F    +  M   
Sbjct: 161 PRTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARH 220

Query: 207 GSIV--PVITLGSISKRWIVPGWRLGWLV 233
             +    VI + S  K + V GWR+G+ +
Sbjct: 221 RELAERSVI-VSSFGKSYHVTGWRVGYCL 248

Length = 384

>gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated

 Score = 78.4 bits (194), Expect = 5e-16
 Identities = 54/206 (26%), Positives = 90/206 (43%), Gaps = 10/206 (4%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIEISL 90
           +A+  A+   H N Y P  GV + R  IA    R    +   + ++ +T G ++A+  ++
Sbjct: 50  EALAYAMAAGH-NQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAI 108

Query: 91  SVLARPGANILIPRPGYPLYE--IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADEN 148
             L RPG  +++  P Y  Y   I  AG      A    L P   + VD     A     
Sbjct: 109 LALVRPGDEVIVFDPSYDSYAPAIELAGG----RAVRVALQP-PDFRVDWQRFAAAISPR 163

Query: 149 TVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS 208
           T  I++  P NP G V+S   ++ + +      I V++DEVY H+ F    +  +     
Sbjct: 164 TRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPE 223

Query: 209 IVP-VITLGSISKRWIVPGWRLGWLV 233
           +      + S  K + V GW++G+ V
Sbjct: 224 LRERAFVVSSFGKTYHVTGWKVGYCV 249

Length = 386

>gnl|CDD|132578 TIGR03539, DapC_actino, succinyldiaminopimelate transaminase

 Score = 77.9 bits (192), Expect = 8e-16
 Identities = 59/200 (29%), Positives = 83/200 (41%), Gaps = 26/200 (13%)

Query: 46  YSPTLGVPSARRGIADYLNRDLPYK-LSPEDVYLTLGCSQAIEISLSVLA-RPGANILIP 103
           Y  T G P  R  I D+L R      L P  V   +G  + +    ++L   PG  ++IP
Sbjct: 52  YPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLGLGPGDTVVIP 111

Query: 104 RPGYPLYEIHA--AGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIIN-PGNP 160
              YP YE+ A  AG+         D   E              D     ++ +N PGNP
Sbjct: 112 ELAYPTYEVGALLAGA----TPVAADDPTE-------------LDPVGPDLIWLNSPGNP 154

Query: 161 CGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYV---PMGVFGSIVPVITLGS 217
            G V S   L+ I   AR  G +V +DE Y  L +   P     P    G    ++ + S
Sbjct: 155 TGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHS 214

Query: 218 ISKRWIVPGWRLGWLVTSDP 237
           +SKR  + G+R G+ V  DP
Sbjct: 215 LSKRSNLAGYRAGF-VAGDP 233

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 357

>gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional

 Score = 72.3 bits (178), Expect = 6e-14
 Identities = 95/370 (25%), Positives = 155/370 (41%), Gaps = 57/370 (15%)

Query: 32  DAVVDALRTAHYNC----YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTL-GCSQAI 86
           D +++A+  A  +     Y    G+   R+ +AD+  R    +L PE   ++L G  + I
Sbjct: 47  DHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGI 106

Query: 87  -EISLSVLARPGANILIPRPGYPLYEIHA--AGSNNNLEARHYDLLPEKRWEVDLDGV-E 142
             I L+ +  PG  +L+P PGYP+Y+I    AG     E     L  E  +  DLD + E
Sbjct: 107 AHIPLAFV-NPGDVVLVPDPGYPVYKIGTIFAGG----EPYFMPLKEENGFLPDLDAIPE 161

Query: 143 ALADENTVAIVIIN-PGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYV 201
            +A +    ++ IN P NP G V   +  +++   A+   IIV  D  Y+ +A+    Y 
Sbjct: 162 DVAKK--AKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDG--YK 217

Query: 202 PMGVFGSIVPV-------ITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL 254
           P     S + V       I   S+SK + + GWR+G+ V           G  D I G  
Sbjct: 218 PP----SFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAV-----------GNADLIAGLG 262

Query: 255 ----NAASHPVTFIQAAVPRIVD-ETNEAFFAKIIGLLKETADICYERIKEIPCITCPVK 309
               N  S     IQ A   I      +    ++  + +E  DI  E ++++  +     
Sbjct: 263 KVKSNVDSGVFQAIQEAG--IAALNGPQEVVEELRKIYQERRDILVEGLRKLG-LEVE-P 318

Query: 310 PQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPA 367
           P+   +V   +            EF   L  +  V++ PG   G   + + RIA      
Sbjct: 319 PKATFYVWAPVPKGY-----TSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALTVPDE 373

Query: 368 TLEDGLERIK 377
            +E+ +ERIK
Sbjct: 374 RIEEAVERIK 383

Length = 385

>gnl|CDD|163313 TIGR03537, DapC, succinyldiaminopimelate transaminase

 Score = 71.5 bits (175), Expect = 9e-14
 Identities = 58/193 (30%), Positives = 86/193 (44%), Gaps = 12/193 (6%)

Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIEISLSVLARPGAN---IL 101
           Y   LG  + R  I+ +  R    KL P+  V  + G  +AI     V   P  +   ++
Sbjct: 32  YPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVI 91

Query: 102 IPRPGYPLYEIHA--AGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGN 159
              PGYP+YE  A  AG     E     L  E  + + L+ VE    E T  + I  P N
Sbjct: 92  FGTPGYPVYERGALFAG----GEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHN 147

Query: 160 PCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSIS 219
           P G      +L++     R  GII+ +DE Y  + FG  P+  + V   I  V+   S+S
Sbjct: 148 PTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEV--GIENVLAFHSLS 205

Query: 220 KRWIVPGWRLGWL 232
           KR  + G+R G++
Sbjct: 206 KRSGMTGYRSGFV 218

The four sequences which make up the seed for this model are not closely related, although they are all members of the pfam00155 family of aminotransferases and are more closely related to each other than to anything else. Additionally, all of them are found in the vicinity of genes involved in the biosynthesis of lysine via the diaminopimelate pathway (GenProp0125), although this amount to a separation of 12 genes in the case of Sulfurihydrogenibium azorense Az-Fu1. None of these genomes contain another strong candidate for this role in the pathway. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. Length = 350

>gnl|CDD|236119 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed

 Score = 68.4 bits (168), Expect = 9e-13
 Identities = 56/199 (28%), Positives = 83/199 (41%), Gaps = 24/199 (12%)

Query: 46  YSPTLGVPSARRGIADYLNRDLPY-KLSPEDVYLTLGCSQAIEISLSVL-ARPGANILIP 103
           Y  T G P  R  I  +L R      L P  V   +G  + +    ++L   PG  ++IP
Sbjct: 58  YPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIP 117

Query: 104 RPGYPLYEIHA--AGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPC 161
              YP YE+ A  AG      A            V  D +  L  +    I + +P NP 
Sbjct: 118 ELAYPTYEVGARLAG------ATV----------VRADSLTELGPQRPALIWLNSPSNPT 161

Query: 162 GNVFSYQHLQKIARTARNLGIIVIADEVYNHLAF-GSTPYV--PMGVFGSIVPVITLGSI 218
           G V    HL+K+   AR  G +V +DE Y  L +      +  P    G    ++ + S+
Sbjct: 162 GRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSL 221

Query: 219 SKRWIVPGWRLGWLVTSDP 237
           SK+  + G+R G+ V  DP
Sbjct: 222 SKQSNLAGYRAGF-VAGDP 239

Length = 364

>gnl|CDD|215327 PLN02607, PLN02607, 1-aminocyclopropane-1-carboxylate synthase

 Score = 67.6 bits (165), Expect = 2e-12
 Identities = 90/368 (24%), Positives = 153/368 (41%), Gaps = 62/368 (16%)

Query: 51  GVPSARRGIADYLN--RDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYP 108
           G+ S R+ +A ++   R    +  P+ + LT G + A E+   +LA PG  +L+P P YP
Sbjct: 96  GLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILADPGDALLVPTPYYP 155

Query: 109 LYE-------------IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVII 155
            ++             IH   SNN      + + P+   E      EA A+     ++I 
Sbjct: 156 GFDRDLRWRTGVKIVPIHCDSSNN------FQVTPQA-LEAAYQEAEA-ANIRVRGVLIT 207

Query: 156 NPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPM-------GVFGS 208
           NP NP G       L+ I        I +++DE+Y+   F ++ +V +       G  G 
Sbjct: 208 NPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGV 267

Query: 209 IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAV 268
              V  + S+SK   +PG+R+G  + S  + ++  +  + S            T + +  
Sbjct: 268 AERVHIVYSLSKDLGLPGFRVG-TIYSYNDKVVTTARRMSSF-----------TLVSSQT 315

Query: 269 PRIVDE--TNEAFFAKIIGLLKETADICYERIKE------IPCITCPVKPQGAMFVMVKL 320
             ++    ++E F    I   +E     YE I +      I C+    K    +F  + L
Sbjct: 316 QHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRAGIECL----KGNAGLFCWMNL 371

Query: 321 NVSMLEDIGDDLEFCL--KLAKEESVIILPGRT--VGMKNWLRIAFA--AEPATLEDGLE 374
           +  +LE    + E  L   + +E  + I PG +       W R+ FA  +E  TLE  L+
Sbjct: 372 S-PLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFANMSED-TLEVALK 429

Query: 375 RIKAFCQR 382
           RI  F  R
Sbjct: 430 RIHRFMDR 437

Length = 447

>gnl|CDD|180317 PRK05942, PRK05942, aspartate aminotransferase; Provisional

 Score = 67.1 bits (164), Expect = 3e-12
 Identities = 89/366 (24%), Positives = 160/366 (43%), Gaps = 53/366 (14%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLS 91
           +A + AL     + Y P  G  S R+ I D+ +R    +L P+   L L  S+     L+
Sbjct: 55  EAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKE---GLT 111

Query: 92  VLA----RPGANILIPRPGYPLYEIH-----AAGSNNNLEARHYDLL--PEKRWEVDLDG 140
            LA     PG  +L+P P YP    H      AG      A+ Y ++  PE  W +DL  
Sbjct: 112 HLALAYVNPGDVVLVPSPAYP---AHFRGPLIAG------AQIYPIILKPENDWLIDLSS 162

Query: 141 V-EALADENTVAIVIIN-PGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAF-GS 197
           + E +A +    I+  N P NP       +  ++I   AR   I+++ D  Y  LAF G 
Sbjct: 163 IPEEVAQQ--AKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGY 220

Query: 198 TPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAA 257
            P   + + G+    +   ++SK + + GWR+G++V +    I+Q    + ++K  L+  
Sbjct: 221 QPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGN--RHIIQG---LRTLKTNLDYG 275

Query: 258 SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE----IPCITCPVKPQGA 313
                 +Q A    + +  +++  ++    +   D   + + E    IP        +  
Sbjct: 276 IFSA--LQKAAETAL-QLPDSYLQQVQERYRTRRDFLIQGLGELGWNIP------PTKAT 326

Query: 314 MFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLED 371
           M++ V   V M        +F L + ++  V++ PG   G   + ++RI+  A+   L +
Sbjct: 327 MYLWVPCPVGM-----GSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIADCDRLGE 381

Query: 372 GLERIK 377
            L+R+K
Sbjct: 382 ALDRLK 387

Length = 394

>gnl|CDD|236517 PRK09440, avtA, valine--pyruvate transaminase; Provisional

 Score = 65.6 bits (161), Expect = 1e-11
 Identities = 89/373 (23%), Positives = 148/373 (39%), Gaps = 79/373 (21%)

Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGAN-----I 100
           Y    G       +A  LN    + +SP+++ LT G   A     ++ A   A+     I
Sbjct: 70  YDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKI 129

Query: 101 LIP-RPGYPLYEIHAAGSNNNLEARHY-------DLLPEK--RWEVDLDGVEALADENTV 150
           L P  P Y  Y      ++  LE   +       +LLPE   ++ VD + +    DE+T 
Sbjct: 130 LFPLAPEYIGY------ADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLHI--DEDTG 181

Query: 151 AIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIV 210
           AI +  P NP GNV + + L+K+   AR   I ++ D  Y        P+ P  +F    
Sbjct: 182 AICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAY------GPPF-PGIIFSEAT 234

Query: 211 PV----ITLG-SISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQ 265
           P+    I L  S+SK  + PG R G +V +D   I   S     I   L     P     
Sbjct: 235 PLWNPNIILCMSLSKLGL-PGVRCG-IVIADEEIIEALSNMNGII--SL----APGRLGP 286

Query: 266 A---------AVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPC-ITCPVKPQGAMF 315
           A          + R+ +     F+ + + L           + + PC I    KP+GA+F
Sbjct: 287 AIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLR---RYLPDEPCLIH---KPEGAIF 340

Query: 316 VMV---KLNVSMLEDIGDDLEFCLKLAKEESVIILPGRT--VGMK-NW------LRIAFA 363
           + +    L ++         E   +L K   V+++PG     G+  +W      +R+ + 
Sbjct: 341 LWLWFKDLPIT-------TEELYQRL-KARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYV 392

Query: 364 AEPATLEDGLERI 376
            +   +E G+  +
Sbjct: 393 QDDEEIEKGIAIL 405

Length = 416

>gnl|CDD|181674 PRK09148, PRK09148, aminotransferase; Validated

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 16/196 (8%)

Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIEISLSVLARPGANILIPR 104
           YS + G+P  RR  A Y  R    KL+P+  V  TLG  +        +  PG  IL P 
Sbjct: 64  YSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPN 123

Query: 105 PGYPLYEIHAAGSNNNLEA----RHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNP 160
           P YP   IHA G    + A    R     P++ +   L+     +    +A+++  P NP
Sbjct: 124 PSYP---IHAFGF---IMAGGVIRSVPAEPDEEFFPALERAVRHSIPKPIALIVNYPSNP 177

Query: 161 CGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP---MGVFGSIVPVITLGS 217
              V      + +   A+   II+++D  Y+ + F   P  P   + V G+    +   S
Sbjct: 178 TAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNP--PPSVLQVPGAKDVTVEFTS 235

Query: 218 ISKRWIVPGWRLGWLV 233
           +SK + + GWR+G+ V
Sbjct: 236 MSKTFSMAGWRMGFAV 251

Length = 405

>gnl|CDD|181219 PRK08068, PRK08068, transaminase; Reviewed

 Score = 63.0 bits (154), Expect = 6e-11
 Identities = 86/365 (23%), Positives = 148/365 (40%), Gaps = 53/365 (14%)

Query: 34  VVDALRTA----HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQA--IE 87
           +V+AL+ A      + YSP  G P  +   AD+  R+    L PE     L   +A  +E
Sbjct: 50  IVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVE 109

Query: 88  ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGV-EALAD 146
           +   ++  PG  IL+P PGYP Y    A +    E     L+ E  +  D   + E +A+
Sbjct: 110 LPQCLM-NPGDTILVPDPGYPDYLSGVALARAQFET--MPLIAENNFLPDYTKIPEEVAE 166

Query: 147 ENTVAIVIIN-PGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAF-GSTPYVPMG 204
           +    ++ +N P NP G V +    ++    A+   I V+ D  Y  + F G  P   + 
Sbjct: 167 K--AKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQ 224

Query: 205 VFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGI-----LQNSGFVDSIKGCLNAASH 259
             G+    I L ++SK + + GWR+ + V  + + I     LQ+  FV       +AA  
Sbjct: 225 TPGAKDVGIELYTLSKTFNMAGWRVAFAV-GNESVIEAINLLQDHLFVSLFGAIQDAAIE 283

Query: 260 PVTFIQAAVPRIVD---ETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFV 316
            +   Q+ V  +V        AF +          +I +E             P+G+ F 
Sbjct: 284 ALLSDQSCVAELVARYESRRNAFIS-------ACREIGWE----------VDAPKGSFFA 326

Query: 317 MVKLNVSMLEDIGDDL---EFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLED 371
            +         +       +F   L ++  V + PG   G   + ++R+    +   L +
Sbjct: 327 WMP--------VPKGYTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLTDEERLRE 378

Query: 372 GLERI 376
            +ERI
Sbjct: 379 AVERI 383

Length = 389

>gnl|CDD|181268 PRK08175, PRK08175, aminotransferase; Validated

 Score = 62.8 bits (153), Expect = 8e-11
 Identities = 73/314 (23%), Positives = 136/314 (43%), Gaps = 32/314 (10%)

Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAI-EISLSVLARPGANILIP 103
           YS + G+P  RR I+ +        + PE +  +T+G  + +  + L+ L   G  +L+P
Sbjct: 63  YSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATLD-HGDTVLVP 121

Query: 104 RPGYPL--YEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE--NTVAIVIINPGN 159
            P YP+  Y    AG+      R   L+    +  +L+   A+ +       +++  P N
Sbjct: 122 NPSYPIHIYGAVIAGAQ----VRSVPLVEGVDFFNELE--RAIRESYPKPKMMILGFPSN 175

Query: 160 PCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS--TPYVPMGVFGSIVPVITLGS 217
           P       +  +K+   A+   ++V+ D  Y  + +     P + M V G+    +   +
Sbjct: 176 PTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSI-MQVPGAKDVAVEFFT 234

Query: 218 ISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQ-AAVPRIVDETN 276
           +SK + + GWR+G++V    N  L ++  +  IK   +  +   T +Q AA+  +  E +
Sbjct: 235 LSKSYNMAGWRIGFMVG---NPELVSA--LARIKSYHDYGT--FTPLQVAAIAAL--EGD 285

Query: 277 EAFFAKIIGLLKETADICYERIKEIPCITCPV-KPQGAMFVMVKLNVSMLEDIGDDLEFC 335
           +     I    K   D+  + + E       V  P+ +M+V  K+       +G  LEF 
Sbjct: 286 QQCVRDIAEQYKRRRDVLVKGLHE---AGWMVEMPKASMYVWAKIPEPYAA-MG-SLEFA 340

Query: 336 LKLAKEESVIILPG 349
            KL  E  V + PG
Sbjct: 341 KKLLNEAKVCVSPG 354

Length = 395

>gnl|CDD|235772 PRK06290, PRK06290, aspartate aminotransferase; Provisional

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 10/188 (5%)

Query: 51  GVPSARRGIADYLNRDLPYK-LSPE-DVYLTLGCSQAIEISLSVLARPGANILIPRPGYP 108
           G+   +   A Y+ +    K + P  +V  ++G   A+ +  S    PG   L+  PGYP
Sbjct: 82  GIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYP 141

Query: 109 LYEIHA---AGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVF 165
           +   H     G   NL      LL E  +  DLD +     E    + +  P NP G V 
Sbjct: 142 VTGTHTKYYGGEVYNLP-----LLEENNFLPDLDSIPKDIKEKAKLLYLNYPNNPTGAVA 196

Query: 166 SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVP 225
           + +  +++   A+   IIV+ D  Y  L F   P   + V G+    + + S+SK + + 
Sbjct: 197 TKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMT 256

Query: 226 GWRLGWLV 233
           GWRL ++V
Sbjct: 257 GWRLAFVV 264

Length = 410

>gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 60/266 (22%), Positives = 109/266 (40%), Gaps = 23/266 (8%)

Query: 56  RRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAA 115
           R+ IA +       +L  E+V L  G ++ I   + V  +P   +LI  P +  YE   A
Sbjct: 60  RKRIASF------EQLDLENVILGNGATELIFNIVKVT-KP-KKVLILAPTFAEYE--RA 109

Query: 116 GSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIAR 175
               + E  + +L  E  +  +   +E +  E    + + NP NP G + S + ++KI  
Sbjct: 110 LKAFDAEIEYAELTEETNFAANEIVLEEI-KEEIDLVFLCNPNNPTGQLISKEEMKKILD 168

Query: 176 TARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTS 235
                 I +I DE +      +     +    +   +I + + +K + +PG RLG+ +TS
Sbjct: 169 KCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTS 228

Query: 236 DPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICY 295
           + N   +    +  ++   +      TF   A   ++D+    +  K I  +KE  D  Y
Sbjct: 229 NKNLAEK----LLQMREPWSIN----TFADLAGQTLLDDKE--YIKKTIQWIKEEKDFLY 278

Query: 296 ERIKEIPCITCPVKPQGAMFVMVKLN 321
             + E   I   V      F+  KL 
Sbjct: 279 NGLSEFKGIK--VYKPSVNFIFFKLE 302

Length = 354

>gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase

 Score = 61.4 bits (150), Expect = 1e-10
 Identities = 45/188 (23%), Positives = 65/188 (34%), Gaps = 27/188 (14%)

Query: 48  PTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGY 107
           P       R   A Y      Y L    V    G +Q   I L         +L+  P Y
Sbjct: 45  PDPEYDELRAAAAAY------YGLPAASVLPVNG-AQEA-IYLLPRLLAPGRVLVLAPTY 96

Query: 108 PLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY 167
             Y    A      E              DLD + A  +E  +  V+ NP NP G +   
Sbjct: 97  SEYA--RAWRAAGHEVVELP---------DLDRLPAALEEADLL-VVCNPNNPTGRLIPP 144

Query: 168 QHLQKIARTARNLGIIVIADE--VYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVP 225
           + L  +A   R  G  ++ DE  +         P       G +V    L S++K + + 
Sbjct: 145 ETLLALAARLRARGGWLVVDEAFIDFTPDASLAPQA-ARFPGLVV----LRSLTKFFGLA 199

Query: 226 GWRLGWLV 233
           G RLG++V
Sbjct: 200 GLRLGFVV 207

This family contains pyridoxal phosphate-binding class II aminotransferases (see pfam00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 330

>gnl|CDD|180947 PRK07366, PRK07366, succinyldiaminopimelate transaminase; Validated

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 91/383 (23%), Positives = 145/383 (37%), Gaps = 54/383 (14%)

Query: 19  LGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYL 78
           LG S L     A +A+  +L     + Y    G    R   A +  +     + PE   L
Sbjct: 37  LGSSDLPAPAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVL 96

Query: 79  TLGCSQ--AIEISLSVLARPGANILIPRPGYPLYE--IHAAGSNNNLEARHYDLLPEKRW 134
            L  SQ     + L+VL  PG   L+  PGYP +   ++ AG     +     L  E  +
Sbjct: 97  PLIGSQEGTAHLPLAVL-NPGDFALLLDPGYPSHAGGVYLAGG----QIYPMPLRAENDF 151

Query: 135 EVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLA 194
                 +          +V+  P NP   +      Q+     +   ++++ D  Y  L 
Sbjct: 152 LPVFADIPTEVLAQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLV 211

Query: 195 FGSTPYVPMGVFGSIVPV-------ITLGSISKRWIVPGWRLGWLVTSDP--NGILQNSG 245
           F      P     SI+         I   ++SK + + G+R+G+ + +      + Q   
Sbjct: 212 FDGEVEPP-----SILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIGNAQLIQALRQVKA 266

Query: 246 FVD--SIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYER----IK 299
            VD    +G LN A   +T  QA V                   ++T  I  +R    I 
Sbjct: 267 VVDFNQYRGILNGAIAALTGPQATV-------------------QQTVQIFRQRRDAFIN 307

Query: 300 EIPCITCPV-KPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KN 356
            +  I  PV  P+  M+V  KL        G+ +EFC +L  +  V   PG   G   + 
Sbjct: 308 ALHQIGWPVPLPEATMYVWAKLPEPWQ---GNSVEFCTQLVAQTGVAASPGSGFGKSGEG 364

Query: 357 WLRIAFAAEPATLEDGLERIKAF 379
           ++R A   +P  LE+ +ERI AF
Sbjct: 365 YVRFALVHDPDILEEAVERIAAF 387

Length = 388

>gnl|CDD|226485 COG3977, COG3977, Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 78/351 (22%), Positives = 146/351 (41%), Gaps = 61/351 (17%)

Query: 59  IADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGAN-----ILIP-RPGYPLYEI 112
           +A  L R+  + ++ +++ LT G   A     ++ A   ++     IL+P  P Y  Y  
Sbjct: 83  LAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGY-- 140

Query: 113 HAAGSNNNLEARHY-------DLLPEK--RWEVDLDGVEALADENTVAIVIINPGNPCGN 163
               ++  LE   +       +LLP    ++ VD + +     E+T AI +  P NP GN
Sbjct: 141 ----ADAGLEEDLFVSAKPNIELLPAGQFKYHVDFEHLHI--GESTGAICVSRPTNPTGN 194

Query: 164 VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVP-----VITLGSI 218
           V + + L K+   AR  GI +I D  Y        P+ P  +F    P     +I   S+
Sbjct: 195 VLTDEELAKLDALARQHGIPLIIDNAY------GVPF-PGIIFSDATPLWNENIILCMSL 247

Query: 219 SKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEA 278
           SK  + PG R G ++ ++   I      + ++ G    +  P     A    +++  +  
Sbjct: 248 SKLGL-PGSRCG-IIIANEKVIQA----ITNMNG--IISLAPGRMGPAIAAEMIESGDLL 299

Query: 279 FFAK--IIGLLKETADICYERIK-EIPCITCPV-KPQGAMFVMVKLNVSMLEDIGDDLEF 334
             ++  I    +         ++  +P   C + KP+GA+F+ +       +D+    E 
Sbjct: 300 RLSEQVIRPFYRNRVQTTIAILRRYLPEYRCLIHKPEGAIFLWL-----WFKDLPITTEE 354

Query: 335 CLKLAKEESVIILPGRT--VGM-KNW------LRIAFAAEPATLEDGLERI 376
             +  K   V+++PG     G+ K W      +R+ +  EP  +E G+  +
Sbjct: 355 LYQRLKARGVLMVPGHYFFPGLDKEWPHTHQCMRMNYVPEPEKIEKGVAIL 405

Length = 417

>gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 55/219 (25%), Positives = 88/219 (40%), Gaps = 35/219 (15%)

Query: 33  AVVDALRTAHYNCYSPTLGVPSARRGIA--DYLNRDLPYKLSPEDVYLTLGCSQAIEISL 90
           AV +      +  Y P  G P  R  IA  DY  R     + PE+++++ G ++     L
Sbjct: 58  AVDELASPETFRGYGPEQGYPFLREAIAENDYRGR-----IDPEEIFISDG-AKCDVFRL 111

Query: 91  SVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALA----- 145
             L  P   + +  P YP Y       +N +  R   L  + R+      +  L      
Sbjct: 112 QSLFGPDNTVAVQDPVYPAYL-----DSNVMAGRAGVLDDDGRYS----KITYLPCTAEN 162

Query: 146 --------DENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS 197
                   + +   I + +P NP G V + + L+++   A   G +++ D  Y+  AF S
Sbjct: 163 NFIPELPEEPHIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYS--AFIS 220

Query: 198 TPYVPMGVF---GSIVPVITLGSISKRWIVPGWRLGWLV 233
            P +P  +F   G+    I   S SK     G RLGW V
Sbjct: 221 DPSLPHSIFEIPGARFCAIEFRSFSKTAGFTGVRLGWTV 259

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Length = 402

>gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase; Provisional

 Score = 57.2 bits (138), Expect = 5e-09
 Identities = 69/297 (23%), Positives = 120/297 (40%), Gaps = 53/297 (17%)

Query: 36  DALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR 95
           + ++++  N Y P       R  +A Y +      + P ++++  G  + I + +     
Sbjct: 46  EIVKSSQVNIY-PDPTAEKLREELARYCS------VVPTNIFVGNGSDEIIHLIMLAFIN 98

Query: 96  PGANILIPRPGYPLYEIHA--AGSNN---NL-EARHYDLLPEKRWEVDLDGVEALADENT 149
            G  ++ P P + +Y +++  AG+      L E   YD        V    ++ +     
Sbjct: 99  KGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYTYD--------VG-SFIKVIEKYQP 149

Query: 150 VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSI 209
             + + NP NP G+V   + + KI   +R    IV+ DE Y    +G+T  V   V    
Sbjct: 150 KLVFLCNPNNPTGSVIEREDIIKIIEKSRG---IVVVDEAYFEF-YGNT-IVD--VINEF 202

Query: 210 VPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVP 269
             +I L ++SK + + G R+G+ V ++ N           I   LN    P   I +   
Sbjct: 203 ENLIVLRTLSKAFGLAGLRVGYAV-ANEN-----------ILKYLNLVKSPYN-INSLSQ 249

Query: 270 RIVDETNEAFFAKIIGLLKETAD-ICYER---IKEIPCIT-CPVKPQGAMFVMVKLN 321
            I  +          G+LKE  + I  ER   IKE+  I    V P    F++VK  
Sbjct: 250 VIALKVLRT------GVLKERVNYILNERERLIKELSKIPGIKVYPSKTNFILVKFK 300

Length = 351

>gnl|CDD|235106 PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional

 Score = 56.1 bits (136), Expect = 8e-09
 Identities = 71/330 (21%), Positives = 119/330 (36%), Gaps = 64/330 (19%)

Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRP 105
             P    P  R  +A +L       +  E +    G  + I++    L  PG N ++  P
Sbjct: 60  LYPDGYAPELRTKVAKHLG------VDEEQLLFGAGLDEVIQMISRALLNPGTNTVMAEP 113

Query: 106 GYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVF 165
            +  Y  +A       E R    +P K    DL+ +    DE T  + I NP NP G   
Sbjct: 114 TFSQYRHNAIIEGA--EVRE---VPLKDGGHDLEAMLKAIDEQTKIVWICNPNNPTGTYV 168

Query: 166 SYQHLQK-IARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVP-------VITLGS 217
           +++ L   +     +  ++V+ DE Y         YV    +   +P       +I L +
Sbjct: 169 NHEELLSFLESVPSH--VLVVLDEAYYE-------YVTAEDYPDTLPLLEKYENLIVLRT 219

Query: 218 ISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHP---VTFIQ-AAVPRIVD 273
            SK + +   R+G+ + S            + +   LN A  P       Q AA+  + D
Sbjct: 220 FSKAYGLAALRVGYGIAS------------EELIEKLNIARPPFNTTRIAQYAAIAALED 267

Query: 274 ETNEAFFAKIIGLLKETADICYERIKE--IPCITCPVKPQGAMFVMVKLNVSMLEDIGDD 331
              +AF  + +    E  +  Y   KE  +        P    F+ V           ++
Sbjct: 268 ---QAFLKECVEKNAEGLEQYYAFCKEYGLFYY-----PSQTNFIFVDTGRD-----ANE 314

Query: 332 L-EFCLKLAKEESVIILPGRTVGMKNWLRI 360
           L E  LK    +  I+  G  +G    +RI
Sbjct: 315 LFEALLK----KGYIVRSGAALGFPTGVRI 340

Length = 359

>gnl|CDD|235742 PRK06207, PRK06207, aspartate aminotransferase; Provisional

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 3/102 (2%)

Query: 131 EKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVY 190
           +KR  +DLD +E          +  NP NP G V+S + + +IA  AR  G  VI D++Y
Sbjct: 161 DKRAGLDLDQLEEAFKAGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLY 220

Query: 191 NHLAFGSTPYVPMGVFGSIVP--VITLGSISKRWIVPGWRLG 230
           + L +  T Y  +     I P  VIT+   SK   + G+RLG
Sbjct: 221 SRLLYDGTSYTHLRALP-IDPENVITIMGPSKTESLSGYRLG 261

Length = 405

>gnl|CDD|235064 PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated

 Score = 54.4 bits (132), Expect = 3e-08
 Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 12/126 (9%)

Query: 69  YKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEI--HAAGSNNNLEARHY 126
           + + PE + L  G  + +E+       PG  ++    G+ +Y I   A G      A+  
Sbjct: 80  FGVDPERIILGNGSDEILELLARAYLGPGDEVIYSEHGFAVYPIAAQAVG------AKPV 133

Query: 127 DLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQK-IARTARNLGIIVI 185
             +P K +  DLD + A     T  + I NP NP G     + +++ +A    +  ++V+
Sbjct: 134 -EVPAKDYGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLPAEEVERFLAGVPPD--VLVV 190

Query: 186 ADEVYN 191
            DE Y 
Sbjct: 191 LDEAYA 196

Length = 367

>gnl|CDD|167650 PRK03967, PRK03967, histidinol-phosphate aminotransferase; Provisional

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 44/199 (22%), Positives = 86/199 (43%), Gaps = 22/199 (11%)

Query: 38  LRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPG 97
           L+   +N Y P +     R  IA++        L  E++ +  G  + I   + +    G
Sbjct: 44  LKRVPFNRY-PHITSDPLREAIAEFYG------LDAENIAVGNGSDELISYLVKLFE--G 94

Query: 98  ANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINP 157
            +I+I  P + +Y  +A    N +      L  ++ + +D + +   A  N  A+ I +P
Sbjct: 95  KHIVITPPTFGMYSFYA--KLNGIPVIDVPL--KEDFTIDGERIAEKAK-NASAVFICSP 149

Query: 158 GNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGS 217
            NP GN+   + + K+  T +     V+ DE Y   +  S     +G+      +I L +
Sbjct: 150 NNPTGNLQPEEEILKVLETGKP----VVLDEAYAEFSGKSL----IGLIDEYPNLILLRT 201

Query: 218 ISKRWIVPGWRLGWLVTSD 236
            SK + + G R G+ + ++
Sbjct: 202 FSKAFGLAGIRAGYAIANE 220

Length = 337

>gnl|CDD|178069 PLN02450, PLN02450, 1-aminocyclopropane-1-carboxylate synthase

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 50/217 (23%), Positives = 91/217 (41%), Gaps = 46/217 (21%)

Query: 51  GVPSARRGIADYL--NRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYP 108
           G+P+ +  +A+++   R       P  + LT G + A E  +  LA PG   L+P P YP
Sbjct: 87  GLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPYYP 146

Query: 109 LYE-------------IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALA-DENTVAIVI 154
            ++             IH + SN     +  +   E+ ++      +A   +     ++I
Sbjct: 147 GFDRDLKWRTGVEIVPIHCSSSNG---FQITESALEEAYQ------QAQKLNLKVKGVLI 197

Query: 155 INPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVI- 213
            NP NP G   +   L  +        I +I+DE+Y+   F S  +V      S++ V+ 
Sbjct: 198 TNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFV------SVMEVLK 251

Query: 214 --------------TLGSISKRWIVPGWRLGWLVTSD 236
                          + S+SK   +PG+R+G + ++D
Sbjct: 252 DRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSND 288

Length = 468

>gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase; Validated

 Score = 51.6 bits (123), Expect = 3e-07
 Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 12/186 (6%)

Query: 48  PTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGY 107
           P  G  + R+ IA+ L+  +      E V    G  + I+I    + + G NI+     +
Sbjct: 62  PDGGATTLRQTIANKLHVKM------EQVLCGSGLDEVIQIISRAVLKAGDNIVTAGATF 115

Query: 108 PLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY 167
           P Y  HA      +E      +       DLD + ++ D +T  + I NP NP G   + 
Sbjct: 116 PQYRHHAI-----IEGCEVKEVALNNGVYDLDEISSVVDNDTKIVWICNPNNPTGTYVND 170

Query: 168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGW 227
           + L +         +IVI +  Y ++     P   + +      ++ L + SK + +  +
Sbjct: 171 RKLTQFIEGISENTLIVIDEAYYEYVTAKDFPET-LPLLEKHKNILVLRTFSKAYGLASF 229

Query: 228 RLGWLV 233
           R+G+ V
Sbjct: 230 RVGYAV 235

Length = 366

>gnl|CDD|178004 PLN02376, PLN02376, 1-aminocyclopropane-1-carboxylate synthase

 Score = 50.1 bits (119), Expect = 1e-06
 Identities = 46/202 (22%), Positives = 87/202 (43%), Gaps = 29/202 (14%)

Query: 51  GVPSARRGIADYLNRDLPYKLS--PEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYP 108
           G+   R+ IA ++ +    K++  PE V ++ G + A E  +  LA PG   LIP P Y 
Sbjct: 95  GLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYY- 153

Query: 109 LYEIHAAGSNNNLEARH-YDLLP-----EKRWEVDLDGVE------ALADENTVAIVIIN 156
                 A  + +L  R   +++P        +++ +D  +        +++    +++ N
Sbjct: 154 ------AAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTN 207

Query: 157 PGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLG 216
           P NP G +     L  + R      I ++ DE+Y    F    +V +    + V +  + 
Sbjct: 208 PSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVN 267

Query: 217 --------SISKRWIVPGWRLG 230
                   S+SK   +PG+R+G
Sbjct: 268 VDLIHIVYSLSKDMGLPGFRVG 289

Length = 496

>gnl|CDD|179950 PRK05166, PRK05166, histidinol-phosphate aminotransferase; Provisional

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 40/158 (25%), Positives = 67/158 (42%), Gaps = 6/158 (3%)

Query: 81  GCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDG 140
           G    I +    + RPG  ++   P +PL+E +       +E     + P+     DLD 
Sbjct: 96  GSEDLIAVICRAVLRPGDRVVTLYPSFPLHEDYPTMMGARVER--VTVTPDLG--FDLDA 151

Query: 141 VEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGST-P 199
           + A        ++  NP NP G+  +   L ++        +IV+ DE Y   A G   P
Sbjct: 152 LCAAVARAPRMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVV-DEAYAEYAAGDDYP 210

Query: 200 YVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDP 237
                +    +P I L + SK + + G R+G+ + SDP
Sbjct: 211 SALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDP 248

Length = 371

>gnl|CDD|234972 PRK01688, PRK01688, histidinol-phosphate aminotransferase; Provisional

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 11/123 (8%)

Query: 71  LSPEDVYLTLGCSQAIEISLSVLARPGA-NILIPRPGYPLYEIHA--AGSNNNLEARHYD 127
           + PE V ++ G  + IE+ +     PG   IL   P Y +Y + A   G    +E R   
Sbjct: 72  VKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIG----VEIRTVP 127

Query: 128 LLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIAD 187
            L    W++DL  +    D     + + +P NP GN+ + Q L+ +    R   I+V  D
Sbjct: 128 TLDN--WQLDLPAIADNLD-GVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVA-D 183

Query: 188 EVY 190
           E Y
Sbjct: 184 EAY 186

Length = 351

>gnl|CDD|181212 PRK08056, PRK08056, threonine-phosphate decarboxylase; Provisional

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 58/216 (26%), Positives = 86/216 (39%), Gaps = 36/216 (16%)

Query: 50  LGVP-SARRGIADYLNRDLPYKLSPEDVYLTL--------GCSQAIEISLSVLARPGANI 100
           LG+P S +R I D L+    Y   P+  Y  L            +      +LA  G   
Sbjct: 32  LGMPVSLKRAIIDNLDCAERY---PDVEYRHLHQALARHHQVPAS-----WILAGNGETE 83

Query: 101 LI--------PR------PGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD 146
            I        PR      PG+  Y    A      E R Y L     W++    +EAL  
Sbjct: 84  SIFAVVSGLKPRRAMIVTPGFAEYR--RALQQVGCEIRRYSLREADGWQLTDAILEALTP 141

Query: 147 ENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF 206
           +    + +  P NP G +   Q LQ IA   ++L I +I DE +       T ++P    
Sbjct: 142 DLD-CLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIP--QL 198

Query: 207 GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQ 242
                +  L S++K + +PG RLG+LV SD   + +
Sbjct: 199 ADNPHLWVLRSLTKFYAIPGLRLGYLVNSDDAAVAR 234

Length = 356

>gnl|CDD|236316 PRK08636, PRK08636, aspartate aminotransferase; Provisional

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 83/338 (24%), Positives = 138/338 (40%), Gaps = 45/338 (13%)

Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIEISLSVLARPGANILIPR 104
           YS + G+   R  I ++  R     L PE +V  T+G  +     +  +  PG   ++P 
Sbjct: 67  YSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPD 126

Query: 105 PGYPLYEIHA-----AGSNNNLEARHYDLLPEKRWEVDLDG----VEALADENT--VAIV 153
           P YP   IH+     AG N         L   + +E+D D     +E    E++     V
Sbjct: 127 PAYP---IHSQAFILAGGN----VHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYV 179

Query: 154 IIN-PGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS--TPYVPMGVFGSIV 210
           ++N P NP          +++   A+     +I+D  Y  + F    TP + + V G+  
Sbjct: 180 VVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSI-LEVEGAKD 238

Query: 211 PVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPR 270
             +   ++SK + + GWR+G++V     G  +  G +  IK  L+      T IQ A   
Sbjct: 239 VAVESYTLSKSYNMAGWRVGFVV-----GNKKLVGALKKIKSWLDYGMF--TPIQVAATI 291

Query: 271 IVDETNEAFFAKIIGLLKETADICYERIK----EIPCITCPVKPQGAMFVMVKLNVSMLE 326
            +D        +I    ++  D+  E       E+       KP+ +MFV  K+      
Sbjct: 292 ALDGDQSC-VEEIRETYRKRRDVLIESFANAGWEL------QKPRASMFVWAKIPEPARH 344

Query: 327 DIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAF 362
            +G  LEF  +L  E  V + PG   G     ++RIA 
Sbjct: 345 -LG-SLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIAL 380

Length = 403

>gnl|CDD|184830 PRK14809, PRK14809, histidinol-phosphate aminotransferase; Provisional

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 74/322 (22%), Positives = 123/322 (38%), Gaps = 63/322 (19%)

Query: 59  IADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSN 118
           +AD  +      +SPE V+L  G   A++     +  PG  +L+P PG+  Y + A   +
Sbjct: 74  LADRWD------VSPEQVWLANGGDGALDYLARAMLDPGDTVLVPDPGFAYYGMSARYHH 127

Query: 119 NNLEARHYDLLPEKRWEVDLDGV-EALADENTVAIVIINPGNPCGNVFSYQHLQKIA-RT 176
              E R Y +     +E   D V +A   E  V +   +P NP G+      ++ +A RT
Sbjct: 128 G--EVREYPVSKADDFEQTADTVLDAYDGERIVYLT--SPHNPTGSEIPLDEVEALAERT 183

Query: 177 ARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVI-------TLGSISKRWIVPGWRL 229
                 +V+ DE Y    F   P        S V ++        L + SK + + G RL
Sbjct: 184 DE--ETLVVVDEAYGE--FAERP--------SAVALVEERDDVAVLRTFSKAYGLAGLRL 231

Query: 230 GWLVTSDPNG---ILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGL 286
           G+ V  +         N+ F  S   C           +A +  + D+ +     + +  
Sbjct: 232 GYAVVPEEWADAYARVNTPFAASELAC-----------RAGLAALDDDEH---VERTV-- 275

Query: 287 LKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVII 346
             ETA    E I+E   +  P       FV+         ++GD      + A+E  VI+
Sbjct: 276 --ETARWAREYIREE--LDAPTWESAGNFVLA--------EVGDA-SAVAEAAQERGVIV 322

Query: 347 LPGRTVGMKNWLRIAFAAEPAT 368
               + G+   +RI       T
Sbjct: 323 RDCTSFGLPECIRITCGTREET 344

Length = 357

>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 26/122 (21%)

Query: 85  AIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEV------DL 138
           AI   L  L + G +++     Y        G+    E     LLP+   EV      D 
Sbjct: 67  AISTVLLALLKAGDHVVASDDLY-------GGTYRLFE----RLLPKLGIEVTFVDPDDP 115

Query: 139 DGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGST 198
           + +EA     T  + + +P NP   V     ++ IA  A   G +++ D   N  A   T
Sbjct: 116 EALEAAIKPETKLVYVESPTNPTLKVVD---IEAIAELAHEHGALLVVD---NTFA---T 166

Query: 199 PY 200
           PY
Sbjct: 167 PY 168

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. Length = 369

>gnl|CDD|178597 PLN03026, PLN03026, histidinol-phosphate aminotransferase; Provisional

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 58/248 (23%), Positives = 98/248 (39%), Gaps = 29/248 (11%)

Query: 56  RRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAA 115
           R  +A+         L  E++ +  G  + I++ +  +  PG  I+   P + +Y   AA
Sbjct: 92  RAALAEDSG------LESENILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYVFDAA 145

Query: 116 GSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIAR 175
              N  E       P+   +V    VEA+       + + +P NP G++ S   L KI  
Sbjct: 146 --VNGAEVIKVPRTPDFSLDVPRI-VEAVETHKPKLLFLTSPNNPDGSIISDDDLLKILE 202

Query: 176 TARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTS 235
               L I+V+ DE Y  + F +     M        +I L + SKR  + G R+G+   +
Sbjct: 203 ----LPILVVLDEAY--IEFSTQE-SRMKWVKKYDNLIVLRTFSKRAGLAGLRVGY--GA 253

Query: 236 DPNGILQNSGFVDSIKGCLNAASHPVTFIQAA-VPRIVDETNEAFFAKIIGLLKETADIC 294
            P  I++           L  A  P     AA V      +N  +   +   L E  +  
Sbjct: 254 FPLSIIE----------YLWRAKQPYNVSVAAEVAACAALSNPKYLEDVKNALVEERERL 303

Query: 295 YERIKEIP 302
           +  +KE+P
Sbjct: 304 FGLLKEVP 311

Length = 380

>gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 17/118 (14%)

Query: 85  AIEISLSVLARPGANILIPRPGY-PLYEIHAA-GSNNNLEARHYDLLPEKRWEVDLDGVE 142
           AI  +L  L + G ++L+P   Y   Y +         +E    D         D     
Sbjct: 90  AISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDP------GDDEALEA 143

Query: 143 ALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPY 200
           A+ + NT  + +  P NP   V     +  IAR A+  G +V+ D  +      +TP 
Sbjct: 144 AIKEPNTKLVFLETPSNPLLEV---PDIPAIARLAKAYGALVVVDNTF------ATPV 192

Length = 396

>gnl|CDD|179888 PRK04870, PRK04870, histidinol-phosphate aminotransferase; Provisional

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 17/150 (11%)

Query: 88  ISLSVLA--RPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGV-EAL 144
           I L  LA  +PGA +L P PG+ +Y + A  +   LE     L  +  + +DL  +  A+
Sbjct: 94  IQLLALACAKPGATVLAPEPGFVMYRMSAKLA--GLEFVGVPLTAD--FTLDLPAMLAAI 149

Query: 145 ADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-M 203
           A+     + +  P NP GN+F    +++I   A   G++V+ DE Y    F    ++P +
Sbjct: 150 AEHRPALVFLAYPNNPTGNLFDDADVERIIEAAP--GLVVV-DEAYQ--PFAGDSWLPRL 204

Query: 204 GVFGSIVPVITLGSISKRWIVPGWRLGWLV 233
             F +++ + T+  +     + G RLG+L 
Sbjct: 205 ARFPNLLVMRTVSKLG----LAGLRLGYLA 230

Length = 356

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 8/144 (5%)

Query: 69  YKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDL 128
            +   +        + A E +L  L  PG  +++   G+      AA      +     +
Sbjct: 13  LQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELAG-AKPVPVPV 71

Query: 129 LPEKRWEVDLDGVE-ALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIAD 187
                  +D+  +E   A  N   IVI       G       L++I + A+  GI+++ D
Sbjct: 72  DDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGV---LVPLKEIRKIAKEYGILLLVD 128

Query: 188 EVYNHLAFGST-PYVPMGVFGSIV 210
                    S  P V +   G+ V
Sbjct: 129 AA--SAGGASPAPGVLIPEGGADV 150

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|234872 PRK00950, PRK00950, histidinol-phosphate aminotransferase; Validated

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 72/322 (22%), Positives = 122/322 (37%), Gaps = 58/322 (18%)

Query: 27  STVAEDAVVDALRTAH-YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLT-LGCSQ 84
           S  A +A+   L   H Y    P    P  R  ++ Y        +  E++ +   G  +
Sbjct: 49  SPKAVEAIEKELSKIHRY----PEPDAPELREALSKYTG------VPVENIIVGGDGMDE 98

Query: 85  AIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEAL 144
            I+  +     PG  ++IP P +  YEI A        A+      E+ + +D+D V   
Sbjct: 99  VIDTLMRTFIDPGDEVIIPTPTFSYYEISAKAHG----AKPVYAKREEDFSLDVDSVLNA 154

Query: 145 ADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-M 203
             E T  I +  P NP GN+   + ++KI  +     ++ + DE Y  + F    Y P  
Sbjct: 155 ITEKTKVIFLCTPNNPTGNLIPEEDIRKILESTD--ALVFV-DEAY--VEFAEYDYTPLA 209

Query: 204 GVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDS-IKGCLNAASHPVT 262
             + ++   I   + SK + + G R+G+             GFV   +      A  P +
Sbjct: 210 LEYDNL---IIGRTFSKVFGLAGLRIGY-------------GFVPEWLIDYYMRAKTPFS 253

Query: 263 F----IQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMV 318
                  AA+  + D   + +  K I    ++ +  Y  +         V P  A FV+V
Sbjct: 254 LTRLSQAAAIAALSD---KEYIEKSIEHGIKSREYLYNELP------FKVYPSEANFVLV 304

Query: 319 KLNVSMLEDIGDDLEFCLKLAK 340
            +   M        EFC +L K
Sbjct: 305 DVT-PMTAK-----EFCEELLK 320

Length = 361

>gnl|CDD|179869 PRK04635, PRK04635, histidinol-phosphate aminotransferase; Provisional

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 11/123 (8%)

Query: 70  KLSPEDVYLTLGCSQAIEISLSVLARPGAN-ILIPRPGYPLYEIHAAGSNNNLEARHYDL 128
            ++PE +  + G  +AIE+ +     PG + I    P Y +Y I A     N+  +   L
Sbjct: 74  GVAPEQILTSRGADEAIELLIRAFCEPGQDSIACFGPTYGMYAISAE--TFNVGVKALPL 131

Query: 129 LPEKRWEVDLDGVEALADENTVAIVII-NPGNPCGNVFSYQHLQKIARTARNLGIIVIAD 187
             +  +++ LD +E L       +V I NP NP G V     ++++     +   IV+ D
Sbjct: 132 TAD--YQLPLDYIEQLDG---AKLVFICNPNNPTGTVIDRADIEQLIEMTPD--AIVVVD 184

Query: 188 EVY 190
           E Y
Sbjct: 185 EAY 187

Length = 354

>gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 18/108 (16%)

Query: 85  AIEISLSVLARPGANILIPRPGYPLYE-----IHAAGSNNNLEARHYDLLPEKRWEVDLD 139
           AI  +L  L + G +++       LY               +E    D         DLD
Sbjct: 79  AIFAALLALLKAGDHVVATDD---LYGGTYRLFEKVLPRFGIEVTFVDPS-------DLD 128

Query: 140 GVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIAD 187
            +EA    NT A+ +  P NP   V     ++ IA+ A+  G +V+ D
Sbjct: 129 ALEAAIKPNTKAVFLETPTNPLLKVVD---IEAIAKIAKKHGALVVVD 173

This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor. Length = 382

>gnl|CDD|169399 PRK08354, PRK08354, putative aminotransferase; Provisional

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 19/163 (11%)

Query: 69  YKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDL 128
            KL  E + +T G ++A+ + + +LA     ++IPR  Y  YE  A      +     D 
Sbjct: 50  SKLFGEPIVITAGITEALYL-IGILALRDRKVIIPRHTYGEYERVARFFAARIIKGPND- 107

Query: 129 LPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADE 188
            PEK        +E L + N+V +   NP NP G  ++++ L+ +     +   ++I DE
Sbjct: 108 -PEK--------LEELVERNSV-VFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDE 157

Query: 189 VYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGW 231
                AF    +V          +I L + +K + +PG R+G+
Sbjct: 158 -----AF--IDFVKKPESPEGENIIKLRTFTKSYGLPGIRVGY 193

Length = 311

>gnl|CDD|224365 COG1448, TyrB, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 11/119 (9%)

Query: 79  TLGCSQAIEISLSVLAR--PGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEV 136
           TLG + A+ ++   LAR  P A + I  P +P +   A      LE   Y     +   +
Sbjct: 100 TLGGTGALRVAADFLARFFPDATVWISDPTWPNH--KAIFEAAGLEVETYPYYDAETKGL 157

Query: 137 DLDGVEALADENTVA---IVIINP--GNPCGNVFSYQHLQKIARTARNLGIIVIADEVY 190
           D DG+  LAD  T     +V+++    NP G   + +  Q++A   +  G+I   D  Y
Sbjct: 158 DFDGM--LADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAY 214

Length = 396

>gnl|CDD|236444 PRK09275, PRK09275, aspartate aminotransferase; Provisional

 Score = 42.5 bits (101), Expect = 3e-04
 Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 21/122 (17%)

Query: 122 EARHYDL-------LPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIA 174
           E   YDL         E  W+     +E L D +  A+ ++NP NP     S + L+KIA
Sbjct: 208 ELPRYDLEVVHINADEENEWQYPDSELEKLRDPSIKALFLVNPSNPPSVAMSDESLEKIA 267

Query: 175 RTAR--NLGIIVIADEVYNHLA--FGSTPYVPMGVFGSIVPVITLG--SISKRWIVPGWR 228
                    +++I D+VY      F S          +++P  T+   S SK +   GWR
Sbjct: 268 DIVNEKRPDLMIITDDVYGTFVDDFRS--------LFAVLPYNTILVYSFSKYFGATGWR 319

Query: 229 LG 230
           LG
Sbjct: 320 LG 321

Length = 527

>gnl|CDD|163513 TIGR03801, asp_4_decarbox, aspartate 4-decarboxylase

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 27/145 (18%)

Query: 102 IPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPC 161
           +PR  + +  I A       +  H        W+     +E L D +  A+ ++NP NP 
Sbjct: 203 LPRYDFEVVRIKADEMTE--DGTH-------TWQYPDKELEKLRDPSIKALFVVNPSNPP 253

Query: 162 GNVFSYQHLQKIARTARNL--GIIVIADEVYNHLA------FGSTPYVPMGVFGSIVPVI 213
               S + ++KI     N    ++++ D+VY          F   PY  +GV+       
Sbjct: 254 SVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGVY------- 306

Query: 214 TLGSISKRWIVPGWRLGWLVTSDPN 238
              S SK +   GWRLG +     N
Sbjct: 307 ---SFSKYFGATGWRLGTIALHKDN 328

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1) [Energy metabolism, Amino acids and amines]. Length = 521

>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 17/139 (12%)

Query: 55  ARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE---ISLSVLARPGANILIPRPGYP--L 109
           AR  +A+++N       S E++  T G ++AI    ISL    +PG  IL+    +   L
Sbjct: 48  AREKVAEFINAP-----SDEEIIFTSGTTEAINLVAISLGRSLKPGDEILVTEMEHHANL 102

Query: 110 YEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPG-NPCGNVFSYQ 168
                         R   + P     +DLD +E L    T  +V I    N  G V    
Sbjct: 103 VPWQELAKRTGATVRVIPVDPN--GLLDLDALEKLLTPRT-KLVAITHVSNVTGTV---N 156

Query: 169 HLQKIARTARNLGIIVIAD 187
            +++I + A   G +V+ D
Sbjct: 157 PVEEIGKLAHEYGALVVVD 175

This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370

>gnl|CDD|236128 PRK07908, PRK07908, hypothetical protein; Provisional

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 30/183 (16%)

Query: 54  SARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR-PGANILIPRPGYPLYEI 112
            AR  +A    R       P++V L  G ++      ++LAR       +  P +   E 
Sbjct: 62  RARAAVAARHGRT------PDEVLLLAGAAEG----FALLARLRPRRAAVVHPSFT--EP 109

Query: 113 HAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQK 172
            AA     +      L P   + +D   V   AD     +VI NP NP   +   + L  
Sbjct: 110 EAALRAAGIPVHRVVLDPP--FRLDPAAVPDDAD----LVVIGNPTNPTSVLHPAEQLLA 163

Query: 173 IARTARNLGIIVIADEVYNHLAFGST-PYVPMGVFGSIVP-VITLGSISKRWIVPGWRLG 230
           + R  R    I++ DE     AF    P  P  + G  +P V+ L S++K W + G R+G
Sbjct: 164 LRRPGR----ILVVDE-----AFADAVPGEPESLAGDDLPGVLVLRSLTKTWSLAGLRVG 214

Query: 231 WLV 233
           + +
Sbjct: 215 YAL 217

Length = 349

>gnl|CDD|225428 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 37/122 (30%), Positives = 48/122 (39%), Gaps = 26/122 (21%)

Query: 85  AIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEV------DL 138
           AI  ++  LA  G NI+       LY     G+ N         L     EV      D 
Sbjct: 89  AITYAILNLAGAGDNIVSSSK---LY----GGTYNLFS----HTLKRLGIEVRFVDPDDP 137

Query: 139 DGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGST 198
           +  EA  DENT A+     GNP  +V     ++ IA  A   G+ +I D   N  A   T
Sbjct: 138 ENFEAAIDENTKAVFAETIGNPGLDVLD---IEAIAEIAHRHGVPLIVD---NTFA---T 188

Query: 199 PY 200
           PY
Sbjct: 189 PY 190

Length = 426

>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 40/190 (21%), Positives = 74/190 (38%), Gaps = 29/190 (15%)

Query: 29  VAEDAVVDALR----TAHYNCYSP----TLGVPSARRGIADYLNRDLPYKLSPEDVYLTL 80
              DAV +  R      H   ++     T    +AR  +A +LN D     S +++  T 
Sbjct: 37  AVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNAD-----SSDEIVFTR 91

Query: 81  GCSQAIEI---SLSVLARPGANILIPRPGYP--LYEIHAAGSNNNLEARHYDLLPEKRWE 135
           G ++A+ +    L    +PG  I++    +   +            + R   L  +    
Sbjct: 92  GTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDD--GL 149

Query: 136 VDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAF 195
           +DLD +E L    T  + + +  N  G V     +++IA  A   G +V+ D      A 
Sbjct: 150 LDLDALEKLITPKTKLVALSHVSNVTGTV---NPVKEIAELAHEHGALVLVD------AA 200

Query: 196 GSTPYVPMGV 205
            +  ++P+ V
Sbjct: 201 QAAGHLPIDV 210

Length = 405

>gnl|CDD|102370 PRK06425, PRK06425, histidinol-phosphate aminotransferase; Validated

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 13/103 (12%)

Query: 142 EALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYV 201
           E L + N   I I++P NP GN+ S   L  I+   R  G ++  DE     AF    +V
Sbjct: 116 EILNNYNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDE-----AFID--FV 168

Query: 202 P------MGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPN 238
           P      + +  S   VI   S++K   +P  R+G++ T D N
Sbjct: 169 PNRAEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDDYN 211

Length = 332

>gnl|CDD|166635 PLN02994, PLN02994, 1-aminocyclopropane-1-carboxylate synthase

 Score = 37.3 bits (86), Expect = 0.004
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 25  SDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLN--RDLPYKLSPEDVYLTLGC 82
           +D   AE  +      A +  Y    G+ + R+ IA+++   R    K   + + L+ G 
Sbjct: 70  ADICTAEGTIDSFKDIALFQDYH---GLANFRKAIANFMAEARGGRVKFDADMIVLSAGA 126

Query: 83  SQAIEISLSVLARPGANILIPRPGYP 108
           + A EI +  +A PG   L+P P Y 
Sbjct: 127 TAANEIIMFCIADPGDAFLVPTPYYA 152

Length = 153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	387
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	100.0
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	100.0
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	100.0
PLN02187	462	rooty/superroot1	100.0
PLN02656	409	tyrosine transaminase	100.0
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	100.0
PTZ00433	412	tyrosine aminotransferase; Provisional	100.0
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	100.0
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	100.0
PRK06207	405	aspartate aminotransferase; Provisional	100.0
PRK07366	388	succinyldiaminopimelate transaminase; Validated	100.0
PLN00175	413	aminotransferase family protein; Provisional	100.0
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	100.0
PRK07681	399	aspartate aminotransferase; Provisional	100.0
PRK06855	433	aminotransferase; Validated	100.0
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	100.0
PRK08636	403	aspartate aminotransferase; Provisional	100.0
PRK08960	387	hypothetical protein; Provisional	100.0
PRK06107	402	aspartate aminotransferase; Provisional	100.0
PRK06348	384	aspartate aminotransferase; Provisional	100.0
PRK08068	389	transaminase; Reviewed	100.0
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	100.0
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	100.0
PTZ00377	481	alanine aminotransferase; Provisional	100.0
PRK07682	378	hypothetical protein; Validated	100.0
PRK09148	405	aminotransferase; Validated	100.0
PRK05942	394	aspartate aminotransferase; Provisional	100.0
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	100.0
PRK07337	388	aminotransferase; Validated	100.0
PRK07324	373	transaminase; Validated	100.0
PRK06108	382	aspartate aminotransferase; Provisional	100.0
PRK08361	391	aspartate aminotransferase; Provisional	100.0
PRK06290	410	aspartate aminotransferase; Provisional	100.0
PRK05957	389	aspartate aminotransferase; Provisional	100.0
PRK05764	393	aspartate aminotransferase; Provisional	100.0
PRK09265	404	aminotransferase AlaT; Validated	100.0
PRK07683	387	aminotransferase A; Validated	100.0
PRK12414	384	putative aminotransferase; Provisional	100.0
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	100.0
PRK08912	387	hypothetical protein; Provisional	100.0
PRK08363	398	alanine aminotransferase; Validated	100.0
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	100.0
PLN02231	534	alanine transaminase	100.0
PRK07309	391	aromatic amino acid aminotransferase; Validated	100.0
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	100.0
PRK09082	386	methionine aminotransferase; Validated	100.0
PRK07550	386	hypothetical protein; Provisional	100.0
PRK07777	387	aminotransferase; Validated	100.0
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	100.0
PRK07568	397	aspartate aminotransferase; Provisional	100.0
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	100.0
PRK05839	374	hypothetical protein; Provisional	100.0
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	100.0
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	100.0
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	100.0
PRK08175	395	aminotransferase; Validated	100.0
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	100.0
PRK09275	527	aspartate aminotransferase; Provisional	100.0
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	100.0
PRK06836	394	aspartate aminotransferase; Provisional	100.0
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	100.0
PRK09257	396	aromatic amino acid aminotransferase; Provisional	100.0
PRK01533	366	histidinol-phosphate aminotransferase; Validated	100.0
PRK06225	380	aspartate aminotransferase; Provisional	100.0
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	100.0
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	100.0
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	100.0
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	100.0
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	100.0
PTZ00376	404	aspartate aminotransferase; Provisional	100.0
PLN02672	1082	methionine S-methyltransferase	100.0
PLN02368	407	alanine transaminase	100.0
PRK06358	354	threonine-phosphate decarboxylase; Provisional	100.0
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	100.0
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	100.0
PRK07392	360	threonine-phosphate decarboxylase; Validated	100.0
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	100.0
PRK08056	356	threonine-phosphate decarboxylase; Provisional	100.0
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	100.0
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	100.0
PRK08637	388	hypothetical protein; Provisional	100.0
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	100.0
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	100.0
PRK02731	367	histidinol-phosphate aminotransferase; Validated	100.0
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	100.0
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	100.0
PLN02397	423	aspartate transaminase	100.0
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	100.0
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	100.0
PRK09105	370	putative aminotransferase; Provisional	100.0
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	100.0
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	100.0
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	100.0
PRK07908	349	hypothetical protein; Provisional	100.0
PRK03321	352	putative aminotransferase; Provisional	100.0
PRK06425	332	histidinol-phosphate aminotransferase; Validated	100.0
PRK00950	361	histidinol-phosphate aminotransferase; Validated	100.0
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	100.0
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	100.0
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	100.0
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	100.0
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	100.0
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	100.0
PRK08354	311	putative aminotransferase; Provisional	100.0
KOG0634	472	consensus Aromatic amino acid aminotransferase and	100.0
cd00609	350	AAT_like Aspartate aminotransferase family. This f	100.0
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	100.0
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	100.0
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	100.0
PRK10874	401	cysteine sulfinate desulfinase; Provisional	100.0
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	100.0
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	100.0
PLN02822	481	serine palmitoyltransferase	100.0
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.98
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.98
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.98
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.98
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.97
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.97
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.97
PRK10534	333	L-threonine aldolase; Provisional	99.97
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.97
PRK02627	396	acetylornithine aminotransferase; Provisional	99.97
PRK13392	410	5-aminolevulinate synthase; Provisional	99.97
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.97
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.97
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.97
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.97
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.97
PLN02483	489	serine palmitoyltransferase	99.97
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.97
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.97
PLN02721	353	threonine aldolase	99.97
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.97
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.97
PLN02409	401	serine--glyoxylate aminotransaminase	99.97
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.97
PRK02948	381	cysteine desulfurase; Provisional	99.97
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.97
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.97
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.97
PRK07049	427	methionine gamma-lyase; Validated	99.97
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.97
PRK07179	407	hypothetical protein; Provisional	99.96
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.96
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.96
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.96
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.96
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.96
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.96
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.96
PRK06234	400	methionine gamma-lyase; Provisional	99.96
PRK09064	407	5-aminolevulinate synthase; Validated	99.96
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	99.96
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	99.96
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.96
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.96
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.96
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.95
PRK13393	406	5-aminolevulinate synthase; Provisional	99.95
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.95
PRK06767	386	methionine gamma-lyase; Provisional	99.95
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.95
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.95
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.95
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.95
PRK09028	394	cystathionine beta-lyase; Provisional	99.95
PLN02242	418	methionine gamma-lyase	99.95
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.95
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.95
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.95
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.95
PRK14012	404	cysteine desulfurase; Provisional	99.95
PRK08249	398	cystathionine gamma-synthase; Provisional	99.95
PRK08861	388	cystathionine gamma-synthase; Provisional	99.95
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.95
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.95
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.95
PRK08045	386	cystathionine gamma-synthase; Provisional	99.95
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.95
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.94
PRK08776	405	cystathionine gamma-synthase; Provisional	99.94
PRK06460	376	hypothetical protein; Provisional	99.94
PRK07503	403	methionine gamma-lyase; Provisional	99.94
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.94
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.94
PLN02651	364	cysteine desulfurase	99.94
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.94
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.94
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.94
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.94
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.94
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.94
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.94
PRK07582	366	cystathionine gamma-lyase; Validated	99.94
PRK07811	388	cystathionine gamma-synthase; Provisional	99.94
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.94
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.94
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.93
PRK08574	385	cystathionine gamma-synthase; Provisional	99.93
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.93
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.93
PRK07050	394	cystathionine beta-lyase; Provisional	99.93
PRK05968	389	hypothetical protein; Provisional	99.93
PRK04260	375	acetylornithine aminotransferase; Provisional	99.93
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	99.93
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.93
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.93
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.93
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.93
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.93
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.92
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.92
PLN00144	382	acetylornithine transaminase	99.92
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.92
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.92
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.92
PRK08064	390	cystathionine beta-lyase; Provisional	99.92
PRK05967	395	cystathionine beta-lyase; Provisional	99.92
PRK05939	397	hypothetical protein; Provisional	99.92
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.92
PRK07505	402	hypothetical protein; Provisional	99.91
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.91
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.91
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.91
PLN02955	476	8-amino-7-oxononanoate synthase	99.91
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.91
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.91
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.91
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.91
PRK07671	377	cystathionine beta-lyase; Provisional	99.91
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.9
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.9
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.9
PLN02509	464	cystathionine beta-lyase	99.9
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.9
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.9
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.9
PRK08114	395	cystathionine beta-lyase; Provisional	99.9
PLN02624	474	ornithine-delta-aminotransferase	99.9
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.9
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.9
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.9
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.89
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.89
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.89
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.89
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.89
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.89
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.88
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.88
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.88
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.88
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.88
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.88
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.88
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.88
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.88
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.88
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.87
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.87
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.87
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.87
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.87
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.87
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	99.87
PRK03080	378	phosphoserine aminotransferase; Provisional	99.86
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.86
PLN02724	805	Molybdenum cofactor sulfurase	99.86
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.86
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.86
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.86
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.86
PRK02769	380	histidine decarboxylase; Provisional	99.85
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.85
PLN02590	539	probable tyrosine decarboxylase	99.85
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	99.85
PLN02880	490	tyrosine decarboxylase	99.84
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	99.84
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.84
PRK06434	384	cystathionine gamma-lyase; Validated	99.84
PLN02271	586	serine hydroxymethyltransferase	99.84
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.84
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.83
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.83
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	99.83
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.83
PRK06541	460	hypothetical protein; Provisional	99.83
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.83
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.83
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.82
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.82
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.82
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.82
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.82
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	99.81
PRK07678	451	aminotransferase; Validated	99.81
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.81
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	99.81
PRK07482	461	hypothetical protein; Provisional	99.81
PRK07046	453	aminotransferase; Validated	99.81
PRK05965	459	hypothetical protein; Provisional	99.81
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.81
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	99.8
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.8
PRK06105	460	aminotransferase; Provisional	99.8
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.8
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.8
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.8
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.8
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.8
PRK06062	451	hypothetical protein; Provisional	99.8
PLN03032	374	serine decarboxylase; Provisional	99.8
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.8
PRK12403	460	putative aminotransferase; Provisional	99.79
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.79
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.79
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.79
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.79
PRK13237	460	tyrosine phenol-lyase; Provisional	99.79
PLN02452	365	phosphoserine transaminase	99.78
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.78
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.78
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.78
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.77
PRK07036	466	hypothetical protein; Provisional	99.77
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.77
PRK06917	447	hypothetical protein; Provisional	99.77
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.77
PRK04311	464	selenocysteine synthase; Provisional	99.77
PRK07480	456	putative aminotransferase; Validated	99.77
PRK07481	449	hypothetical protein; Provisional	99.76
PRK06149	972	hypothetical protein; Provisional	99.76
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	99.76
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.75
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.75
PRK07483	443	hypothetical protein; Provisional	99.75
PRK06148	1013	hypothetical protein; Provisional	99.74
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	99.74
PLN02263	470	serine decarboxylase	99.74
PRK12462	364	phosphoserine aminotransferase; Provisional	99.73
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.73
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	99.72
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	99.72
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	99.72
PRK08297	443	L-lysine aminotransferase; Provisional	99.72
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.71
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	99.71
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	99.7
PRK15029	755	arginine decarboxylase; Provisional	99.69
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.68
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.67
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	99.67
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.66
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	99.65
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	99.65
PRK05367	954	glycine dehydrogenase; Provisional	99.65
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	99.64
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.64
PRK12566	954	glycine dehydrogenase; Provisional	99.63
PRK13578	720	ornithine decarboxylase; Provisional	99.61
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	99.58
PRK15400	714	lysine decarboxylase CadA; Provisional	99.57
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.56
PRK15399	713	lysine decarboxylase LdcC; Provisional	99.55
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	99.54
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.52
PRK05367	954	glycine dehydrogenase; Provisional	99.51
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	99.51
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	99.45
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.44
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	99.44
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	99.43
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	99.33
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	99.28
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	99.23
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	99.18
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	99.17
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.14
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	99.08
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	99.06
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	99.05
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	99.01
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	98.96
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	98.91
KOG0629	510	consensus Glutamate decarboxylase and related prot	98.9
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	98.86
COG4100	416	Cystathionine beta-lyase family protein involved i	98.79
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	98.76
PRK12566	954	glycine dehydrogenase; Provisional	98.4
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	97.93
KOG2790	370	consensus Phosphoserine aminotransferase [Coenzyme	97.79
KOG3843	432	consensus Predicted serine hydroxymethyltransferas	97.39
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	97.25
PLN02672	1082	methionine S-methyltransferase	95.79
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	94.8
PRK10595	164	SOS cell division inhibitor; Provisional	89.52
TIGR00623	168	sula cell division inhibitor SulA. All proteins in	88.3
COG1105	310	FruK Fructose-1-phosphate kinase and related fruct	83.27

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-61  Score=414.12  Aligned_cols=378  Identities=59%  Similarity=1.046  Sum_probs=363.9

Q ss_pred             cccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHH
Q 038416            7 QETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI   86 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~   86 (387)
                      ++.++.+..|+|+.++.+++++.+.+|+.++++.+..++|.+..|....|+++|+|+.++.....++++|++|+|.++|+
T Consensus        60 ~k~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAI  139 (447)
T KOG0259|consen   60 KKPILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAI  139 (447)
T ss_pred             CceeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHH
Confidence            34678899999999999999999999999999998899999999999999999999999888889999999999999999


Q ss_pred             HHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCC
Q 038416           87 EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFS  166 (387)
Q Consensus        87 ~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  166 (387)
                      +.++.+|.+||.+|++|.|+|+-|...+.  ..|++++++++.++.+|.+|++.+|+++++||++++++||+||+|.+++
T Consensus       140 e~~i~~LA~p~aNILlPrPGfp~Y~~~a~--~~~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPcGnVys  217 (447)
T KOG0259|consen  140 ELAISSLANPGANILLPRPGFPLYDTRAI--YSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYS  217 (447)
T ss_pred             HHHHHHhcCCCCceecCCCCCchHHHhhh--hcCceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCCCccccc
Confidence            99999999999999999999999999999  9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          167 YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       167 ~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      .+.+++|++.|+++++++|.||+|..+.|++.++.++..+.....++.++++||.|..||||+||++..|+..++.++..
T Consensus       218 ~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGWRlGWi~~hD~~gvf~~~~~  297 (447)
T KOG0259|consen  218 EDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGWRLGWIALHDPRGVFRDTKV  297 (447)
T ss_pred             HHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccccCCceeeeEEEecccccccchHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccccc
Q 038416          247 VDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE  326 (387)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~  326 (387)
                      .+.+.+..+....+.++.|.|+-.+|+...++++......++.+.+...+.|+++|++.+...|++.+|+|+.++...++
T Consensus       298 ~q~~~~~~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPeg~mylmv~l~~s~~~  377 (447)
T KOG0259|consen  298 VQGIKNFLDIIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPEGCMYLMVKLNLSLFP  377 (447)
T ss_pred             HHHHHHHHhccCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCCCcceEEEeccchhhhc
Confidence            89999988888999999999999999998899999999999999999999999999999888999999999999988888


Q ss_pred             CCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHHhhhc
Q 038416          327 DIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAKK  386 (387)
Q Consensus       327 ~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~~~  386 (387)
                      ++.++.+|++.|.++..+.+.||..|+.++|+|++++.+.+.+++++.||++++.++.+.
T Consensus       378 ~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~i~~~~~~leea~~Rik~Fc~RH~~~  437 (447)
T KOG0259|consen  378 DIEDDVDFCQKLAREESVICLPGQAFGLKNWLRIVITVEEEMLEEAFSRIKEFCDRHSKE  437 (447)
T ss_pred             cccccHHHHHHHhhhcceEEeccccccCCCeEEEEEccChHHHHHHHHHHHHHHHhhhhc
Confidence            888999999999999999999999999999999999999999999999999999988753

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-57  Score=417.85  Aligned_cols=357  Identities=27%  Similarity=0.462  Sum_probs=321.3

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCC-EEEcCChHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPED-VYLTLGCSQAI   86 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~-i~~~~g~~~a~   86 (387)
                      +..++.+.|+|    |+++|+.+.+++.+++.+... +|.+..|.++||++|++++.++++..+.+++ |++|+|+++|+
T Consensus        28 ~~vi~l~iG~P----d~~~p~~i~~a~~~a~~~~~~-~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al  102 (393)
T COG0436          28 EDVIDLSIGEP----DFPTPEHIIEAAIEALEEGGT-HYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEAL  102 (393)
T ss_pred             CCEEEeCCCCC----CCCCCHHHHHHHHHHHhcccC-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHH
Confidence            56889999999    999999999999999988643 6768899999999999999999998888876 99999999999


Q ss_pred             HHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCC-CCccCChhhHHHhhccCceEEEEeCCCCCccccC
Q 038416           87 EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPE-KRWEVDLDGVEALADENTVAIVIINPGNPCGNVF  165 (387)
Q Consensus        87 ~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~  165 (387)
                      ..++.+++++||+|++++|.|..|...+.  ..|.+++.+++..+ ++|.+|++.|+++++++||++++++||||||.++
T Consensus       103 ~~~~~a~~~pGDeVlip~P~Y~~y~~~~~--~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NPTGav~  180 (393)
T COG0436         103 FLAFLALLNPGDEVLIPDPGYPSYEAAVK--LAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVY  180 (393)
T ss_pred             HHHHHHhcCCCCEEEEeCCCCcCHHHHHH--hcCCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCCCCcCcCC
Confidence            99999999999999999999999999999  99999999998655 4899999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEeeCCCCcccch
Q 038416          166 SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNS  244 (387)
Q Consensus       166 ~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~  244 (387)
                      +.+++++|+++|++||++||.||+|..+.|++..+.++..+.. .++++++.||||.|+++|||+||+++++       +
T Consensus       181 ~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~-------~  253 (393)
T COG0436         181 SKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPP-------E  253 (393)
T ss_pred             CHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEeecCh-------H
Confidence            9999999999999999999999999999999865555555554 4789999999999999999999999973       1


Q ss_pred             hHHHHHHhhhh-ccCCcchHHHHHHHHHhhhcc-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCc
Q 038416          245 GFVDSIKGCLN-AASHPVTFIQAAVPRIVDETN-EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNV  322 (387)
Q Consensus       245 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~  322 (387)
                      ++++.+.+..+ ...+++.+.|.++..+|+... ....+.+.+.+++|++.+.+.|.+++++.+...|.+++|+|++++.
T Consensus       254 ~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~Ga~Y~~~~i~~  333 (393)
T COG0436         254 ELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPE  333 (393)
T ss_pred             HHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCCCeeEEEEeecCC
Confidence            68888875544 667899999999999999753 3567778899999999999999999889966448999999999986


Q ss_pred             ccccCCCcHHHHHHHHHHhcCeEEEcCCccCCC---CeEEEEeeCChHhHHHHHHHHHHHHHHh
Q 038416          323 SMLEDIGDDLEFCLKLAKEESVIILPGRTVGMK---NWLRIAFAAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       323 ~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~---~~~Ri~~~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      .     .++.+++..|+++.||.+.||..|+..   +++|++++.+.+.+++++++|.+.++.+
T Consensus       334 ~-----~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~~~~~l~~a~~rl~~~~~~~  392 (393)
T COG0436         334 L-----LDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLATSEETLEEALRRLARFLAEY  392 (393)
T ss_pred             C-----CCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEecCHHHHHHHHHHHHHHHHhc
Confidence            4     378899999999999999999999975   7999999998899999999999988765

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=100.00  E-value=3.9e-56  Score=416.85  Aligned_cols=378  Identities=65%  Similarity=1.146  Sum_probs=326.8

Q ss_pred             cccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHH
Q 038416            7 QETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI   86 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~   86 (387)
                      .+.+++++.|+|+..+++++++.+.+++.+++.....+.|++..|..++|+++++++.+.++..+++++|++|+|+++++
T Consensus        51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al  130 (430)
T PLN00145         51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAI  130 (430)
T ss_pred             CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHH
Confidence            34678888999999999999999999999998765556899888999999999999998888888999999999999999


Q ss_pred             HHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCC
Q 038416           87 EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFS  166 (387)
Q Consensus        87 ~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  166 (387)
                      ..++.++.++||+|+++.|+|+.|.....  ..|.++..+++.++++|.+|+++++++++++++++++++|+||||.+++
T Consensus       131 ~l~~~~l~~~Gd~Vlv~~P~y~~y~~~~~--~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~P~NPtG~v~~  208 (430)
T PLN00145        131 EIIMSVLAQPGANILLPRPGYPLYEARAV--FSGLEVRHFDLLPERGWEVDLEGVEALADENTVAMVIINPNNPCGSVYS  208 (430)
T ss_pred             HHHHHHhcCCCCEEEEcCCCCccHHHHHH--HcCCEEEEeeCCcccCCcCCHHHHHHHhCcCceEEEEeCCCCCCCCCCC
Confidence            99999999999999999999999998888  8999999999877778999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          167 YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       167 ~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      .+++++|+++|+++|+++|+||+|..+.|++..+.++..+....++++++||||.|++||+|+||++++++..+....++
T Consensus       209 ~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~  288 (430)
T PLN00145        209 YEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRLGWIATCDPNGILKETKV  288 (430)
T ss_pred             HHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCCeeEEEEEEecchhhhhhhHH
Confidence            99999999999999999999999999988776556666666667899999999999999999999998654332211123


Q ss_pred             HHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccccc
Q 038416          247 VDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE  326 (387)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~  326 (387)
                      ++.+.........++.+.|.++..+|....+.++++..+.++++++.+.+.|++++++.++..|++++|+|++++....+
T Consensus       289 ~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P~ga~y~~v~l~~~~~~  368 (430)
T PLN00145        289 VDSIRNYLNISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKEIKCITCPHKPEGSMFVMVKLDLSCLS  368 (430)
T ss_pred             HHHHHHHhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCeeeEEEeccChhhcC
Confidence            34444444444456788999999999864568899999999999999999999988887555799999999998753333


Q ss_pred             CCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHHhhhc
Q 038416          327 DIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAKK  386 (387)
Q Consensus       327 ~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~~~  386 (387)
                      +..++.+++..+++++||.+.||..|+..+|+||+++.+.+++++++++|++++.+++++
T Consensus       369 ~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~~~~~~l~~al~rl~~~~~~~~~~  428 (430)
T PLN00145        369 GIKDDMDFCCKLAKEESVVVLPGSALGMKNWLRITFAIDPPSLEDGLERLKSFCLRHAKL  428 (430)
T ss_pred             CCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHhccc
Confidence            333566788889999999999999999899999999988999999999999999998865

>PLN02187 rooty/superroot1

Probab=100.00  E-value=3.1e-55  Score=413.26  Aligned_cols=375  Identities=51%  Similarity=0.977  Sum_probs=319.7

Q ss_pred             cccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHH
Q 038416            7 QETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI   86 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~   86 (387)
                      ++.+++++.|+|...|.+.+++.+.+++.+++.......|++..|..+||+++|+|+.+.++.++++++|++|+|+++++
T Consensus        65 ~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al  144 (462)
T PLN02187         65 NKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGI  144 (462)
T ss_pred             CCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHH
Confidence            45688889999977777999999999999998866556898888999999999999998888889999999999999999


Q ss_pred             HHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCC
Q 038416           87 EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFS  166 (387)
Q Consensus        87 ~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  166 (387)
                      ..++.+++++||+|+++.|+|+.|...+.  ..|.++..+++.++++|.+|++.++++++++++++++++|+||||.+++
T Consensus       145 ~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~--~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~~v~i~nP~NPTG~v~s  222 (462)
T PLN02187        145 EIVFESLARPNANILLPRPGFPHYDARAA--YSGLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMVVINPNNPCGNVYS  222 (462)
T ss_pred             HHHHHHhcCCCCEEEEeCCCCccHHHHHH--HcCCEEEEEeCccccCCccCHHHHHHhcCCCcEEEEEeCCCCCCCCccC
Confidence            99999999999999999999999998899  9999999999876678999999999999889999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          167 YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       167 ~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      .+++++|+++|+++|++||+||+|.++.|++..+.++..+....++++++||||.|+++|+|+||++++++..+.   +.
T Consensus       223 ~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pGlRiG~~v~~~p~~~~---~~  299 (462)
T PLN02187        223 HDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPGWKIGWIALNDPEGVF---ET  299 (462)
T ss_pred             HHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCCccceeEEEEecCchhHH---HH
Confidence            999999999999999999999999999887655556655655457999999999999999999999986432111   12


Q ss_pred             HHHHHhhhh---ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcc
Q 038416          247 VDSIKGCLN---AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVS  323 (387)
Q Consensus       247 ~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~  323 (387)
                      ++.+.....   ...+++.+.|.++..++++..+.++++..+.++++++.+.+.|++++++..+..|.+|+|+|++++..
T Consensus       300 ~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~~~~P~gg~fl~~~l~~~  379 (462)
T PLN02187        300 TKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKPESCTYLLTKLELS  379 (462)
T ss_pred             HHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCCCCCEeEEEEeecChh
Confidence            334444332   23355789999999999754568899999999999999999999886554344788999999988643


Q ss_pred             cccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHHhhhc
Q 038416          324 MLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAKK  386 (387)
Q Consensus       324 ~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~~~  386 (387)
                      ..+++.++.+++..+++++||.+.||..|+..+++||+++.+++.+++++++|.++++++.++
T Consensus       380 ~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis~~~~~e~l~~al~rL~~~l~~~~~~  442 (462)
T PLN02187        380 LMDNIKDDIDFCVKLAREENLVFLPGDALGLKNWMRITIGVEAHMLEDALERLKGFCTRHAKK  442 (462)
T ss_pred             hCCCCCCHHHHHHHHHhhCCEEEECccccCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHhhhc
Confidence            222222456777888889999999999998889999999989999999999999999988765

>PLN02656 tyrosine transaminase

Probab=100.00  E-value=2.4e-54  Score=403.82  Aligned_cols=378  Identities=65%  Similarity=1.127  Sum_probs=322.2

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      +.+++.++|+|...+++++|+.+.+++.+++.......|++..|..++|+++++++...++..+++++|++|+|+++++.
T Consensus        31 ~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~  110 (409)
T PLN02656         31 KRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAID  110 (409)
T ss_pred             CeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHH
Confidence            45678889999777779999999999999888765668988889999999999999988888889999999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      .++.+++++||+|++++|+|..+.....  ..|.++..+++.+++++.+|++.++++++++++++++++|+||||.+++.
T Consensus       111 ~~~~~l~~~gd~Vlv~~p~y~~~~~~~~--~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~s~  188 (409)
T PLN02656        111 VALSMLARPGANILLPRPGFPIYELCAA--FRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVALVIINPGNPCGNVYSY  188 (409)
T ss_pred             HHHHHHhCCCCeEEEeCCCCCcHHHHHH--HcCCEEEEEeCCCcCCCCCCHHHHHHHhccCceEEEEECCCCCCCCCCCH
Confidence            9999999999999999999999988888  89999999998766678899999999998889999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      +++++|+++|+++++++|+|++|.++.+++....++..++...++++++||||.|+++|+|+||++++++..+..+++++
T Consensus       189 ~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~~~  268 (409)
T PLN02656        189 QHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIV  268 (409)
T ss_pred             HHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccCcceeEEEEEEeCcccccccHHHH
Confidence            99999999999999999999999999887755555555555568999999999999999999999996533333234678


Q ss_pred             HHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccC
Q 038416          248 DSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLED  327 (387)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  327 (387)
                      +.+.+.......++.+.|.++..++++..+.++++..+.++++++.+.+.|+.++++..+..|.+|+|+|++++....++
T Consensus       269 ~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p~gg~~~w~~l~~~~~~~  348 (409)
T PLN02656        269 ERIKKYFDILGGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIPCITCPHKPEGSMAVMVKLNLSLLED  348 (409)
T ss_pred             HHHHHHHhhhcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCCCeEEEEEEecchhhcCC
Confidence            88876654334578889999999998645678899999999999999999998865543447899999999986432222


Q ss_pred             CCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHHhhhcC
Q 038416          328 IGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAKKQ  387 (387)
Q Consensus       328 ~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~~~~  387 (387)
                      ..++.+++..+++++||.+.||..|+..+++||+++.+++++++++++|++++.++...|
T Consensus       349 ~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~~~~~e~l~eal~rl~~~~~~~~~~~  408 (409)
T PLN02656        349 ISDDIDFCFKLAREESVIILPGTAVGLKNWLRITFAADPSSLEEALGRIKSFYLRHSKTQ  408 (409)
T ss_pred             CCCHHHHHHHHHHhCCEEEecchhcCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHhcccc
Confidence            223456777777889999999999988899999999899999999999999998877544

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=100.00  E-value=4.9e-54  Score=401.46  Aligned_cols=378  Identities=64%  Similarity=1.103  Sum_probs=314.0

Q ss_pred             cccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHH
Q 038416            7 QETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI   86 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~   86 (387)
                      ...+++.+.|+|..+.++++|+.+.+++.+++.......|++..|..+||+++++|+.+.++.++++++|++|+|+++++
T Consensus        31 ~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al  110 (409)
T PLN00143         31 HRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAA  110 (409)
T ss_pred             CCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHH
Confidence            44577888999844444999999999999998866556798888999999999999998888888999999999999999


Q ss_pred             HHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCC
Q 038416           87 EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFS  166 (387)
Q Consensus        87 ~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  166 (387)
                      ..++.+++++||.|+++.|+|+.+...+.  ..|.++..+++.++++|.+|+++++++++++++.+++++||||||.+++
T Consensus       111 ~~~~~~l~~~gd~v~v~~P~y~~~~~~~~--~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~nP~NPTG~~~s  188 (409)
T PLN00143        111 EIIIKVLARPEANILLPRPGFPDVETYAI--FHHLEIRHFDLLPEKGWEVDLDAVEAIADENTIAMVIINPGNPCGSVYS  188 (409)
T ss_pred             HHHHHHHcCCCCEEEEcCCCCcCHHHHHH--HcCCEEEEEeccCCCCCcCCHHHHHHhcccCCEEEEEECCCCCCCCccC
Confidence            99999999999999999999999999999  9999999999866677889999999998888999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          167 YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       167 ~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      .+++++|+++|++++++||+||+|.++.+++....++..+...+++++++||||.|+++|+|+||++++++..+...-+.
T Consensus       189 ~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~~~  268 (409)
T PLN00143        189 YEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEI  268 (409)
T ss_pred             HHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCCCccceEEEEeeCchhhhhhHHH
Confidence            99999999999999999999999999988765445555555556899999999999999999999998543211100012


Q ss_pred             HHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccccc
Q 038416          247 VDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE  326 (387)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~  326 (387)
                      ++.+.+.......++.+.|.++..+|.+..+.++++..+.++++++.+.+.|+++++..+...|++|+|+|++++....+
T Consensus       269 ~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p~gg~f~w~~l~~~~~~  348 (409)
T PLN00143        269 ADSIKKALNPAPFPPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCIMCPQKAEGAFFALVKLNLLLLE  348 (409)
T ss_pred             HHHHHHHHhccCCCCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEEEEecchhhcC
Confidence            33343333222335778999999988754467889999999999999999998875544344688999999999742111


Q ss_pred             CCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHHhhhc
Q 038416          327 DIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAKK  386 (387)
Q Consensus       327 ~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~~~  386 (387)
                      +..++.+++..+++++||.+.||..|+..+++||+++.+++++++++++|+++++++.++
T Consensus       349 ~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~~~~~~~l~~al~rl~~~l~~~~~~  408 (409)
T PLN00143        349 DIEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITFAVEQSSLEDGLGRLKSFCGRHAKK  408 (409)
T ss_pred             CCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEEcCCHHHHHHHHHHHHHHHHHhccC
Confidence            222456777788888999999999998889999999988999999999999999888764

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=100.00  E-value=9.8e-52  Score=386.86  Aligned_cols=374  Identities=35%  Similarity=0.647  Sum_probs=314.1

Q ss_pred             cccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcC------CCCCCCCCEEEcC
Q 038416            7 QETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDL------PYKLSPEDVYLTL   80 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~------~~~~~~~~i~~~~   80 (387)
                      +..+++++.|.|...+++.+++.+.+++.+.+.......|++..|..+||+.+++|+++++      +..+++++|++|+
T Consensus        32 ~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~  111 (412)
T PTZ00433         32 PKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCS  111 (412)
T ss_pred             CCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhhEEEeC
Confidence            3456788899986666788999999999998876555689998899999999999998754      3567889999999


Q ss_pred             ChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCC
Q 038416           81 GCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNP  160 (387)
Q Consensus        81 g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~np  160 (387)
                      |+++++..++.+++++||+|+++.|+|..+...++  ..|.++..+++++++++++|+++++++++++++++++++||||
T Consensus       112 G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~~~~~--~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NP  189 (412)
T PTZ00433        112 GVSHAILMALTALCDEGDNILVPAPGFPHYETVCK--AYGIEMRFYNCRPEKDWEADLDEIRRLVDDRTKALIMTNPSNP  189 (412)
T ss_pred             ChHHHHHHHHHHhcCCCCEEEEccCCcccHHHHHH--HcCCEEEEEecCccccCcCCHHHHHHHhccCceEEEEeCCCCC
Confidence            99999999999999999999999999999999999  9999999999876667899999999998888999999999999


Q ss_pred             ccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCc
Q 038416          161 CGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGI  240 (387)
Q Consensus       161 tG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~  240 (387)
                      ||.+++.+++++|+++|+++|++||+||+|.++.+++....++..+....++++++||||.|+++|+|+||+++.++...
T Consensus       190 tG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~  269 (412)
T PTZ00433        190 CGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVPGWRLGWLLLVDPHGN  269 (412)
T ss_pred             CCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcCCCCeeEEEEEEeCCccc
Confidence            99999999999999999999999999999999988765444555555444689999999999999999999997432111


Q ss_pred             ccchhHHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEec
Q 038416          241 LQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKL  320 (387)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~  320 (387)
                        .+++++.+.+......+.+.+.|.++..++.+..+.++++..+.++++++.+.+.|+++.++. +..|++|+|+|+++
T Consensus       270 --~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~~~p~gg~f~~~~l  346 (412)
T PTZ00433        270 --GGDFLDGMKRLGMLVCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGECIGLS-PTMPRGSMFLMSRL  346 (412)
T ss_pred             --HHHHHHHHHHHhhccCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-ccCCCeeEEEEEEe
Confidence              124666666654334567888999998888754568889999999999999999998865676 44889999999998


Q ss_pred             CcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHHhhh
Q 038416          321 NVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       321 ~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      +....++..++.+++..+++++||.+.||..|+..+++||+++..++++++++++|.++++.+++
T Consensus       347 ~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~l~~al~~l~~~~~~~~~  411 (412)
T PTZ00433        347 DLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTISRPVEVLREAVERIKAFCERHKK  411 (412)
T ss_pred             chhhcCCCCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhcc
Confidence            64211111245678888877789999999999888999999998889999999999999987764

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=100.00  E-value=4.5e-51  Score=381.58  Aligned_cols=372  Identities=53%  Similarity=0.964  Sum_probs=315.0

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      ..+++.+.|+|...|++++++.+.+++.+.+.......|++..|..++|+.++++++...+..+++++|++|+|+++++.
T Consensus        31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~  110 (403)
T TIGR01265        31 KPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIE  110 (403)
T ss_pred             CCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHH
Confidence            45677889998777889999999999999887655568988889999999999999887777788899999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      .++.++.++||+|+++.|+|..+...+.  ..|.++..+++.+.+++.+|++.+++++.++++++++++|+||||.+++.
T Consensus       111 ~~~~~l~~~gd~Vlv~~p~y~~~~~~~~--~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~  188 (403)
T TIGR01265       111 ICIEALANPGANILVPRPGFPLYDTRAA--FSGLEVRLYDLLPEKDWEIDLDGLEALADEKTVAIVVINPSNPCGSVFSR  188 (403)
T ss_pred             HHHHHhCCCCCEEEEeCCCchhHHHHHH--HcCCEEEEecCCcccCCccCHHHHHHHhCcCccEEEEecCCCCCCCCCCH
Confidence            9999999999999999999999998889  99999999988666677899999999998889999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      +++++|+++|+++|+++|+|++|+++.+++....++..+....++++++||||.|+++|+|+||++++++...+ .++++
T Consensus       189 ~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~-~~~~~  267 (403)
T TIGR01265       189 DHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGWRLGWIIIHDPHGIF-RDTVL  267 (403)
T ss_pred             HHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCCcceEEEEEEeCchhhh-HHHHH
Confidence            99999999999999999999999999887755556666666567999999999999999999999986432111 01134


Q ss_pred             HHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccC
Q 038416          248 DSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLED  327 (387)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  327 (387)
                      +.+.........++.+.|.++..++.+..+.++.+..+.++++++.+.+.|+.++++. +..|.+|+|+|++++....++
T Consensus       268 ~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~p~~g~f~~~~~~~~~~~~  346 (403)
T TIGR01265       268 QGLKNLLQRILGPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKDIPGLV-CPKPEGAMYLMVKLELELFPE  346 (403)
T ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCce-ecCCCceeEEEEeccccccCC
Confidence            4444443334567889999999999765568889999999999999999999887776 447999999999987532211


Q ss_pred             CCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHHh
Q 038416          328 IGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       328 ~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      ..++.+++..+++++||.+.||..|+..+++||+++.+++++++++++|+++++++
T Consensus       347 ~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~~~~~~l~~~l~~l~~~~~~~  402 (403)
T TIGR01265       347 IKDDVDFCEKLVREESVICLPGSAFGLPNWVRITITVPESMLEEACSRIKEFCERH  402 (403)
T ss_pred             CCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence            22466788887888899999999998889999999988899999999999998765

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=100.00  E-value=4.7e-51  Score=381.63  Aligned_cols=369  Identities=37%  Similarity=0.730  Sum_probs=309.0

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      ..++++.|.|....++++++.+.+++.+.+.......|.+..|..+||+++++++.+. +..+++++|++|+|+++++..
T Consensus        32 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~-~~~~~~~~i~~t~G~~~al~~  110 (401)
T TIGR01264        32 PMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNP-DGPIEADDVVLCSGCSHAIEM  110 (401)
T ss_pred             CeeecCCCCCCCcCCCCCCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhhc-CCCCCHHHEEECcChHHHHHH
Confidence            4578888888444568899999999999887655567988889999999999999864 446788999999999999999


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      ++.+++++||+|+++.|+|..+...++  ..|.++..++++.++++++|++.++++++++++++++++|+||||.+++.+
T Consensus       111 ~~~~l~~~gd~v~i~~P~y~~~~~~~~--~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~  188 (401)
T TIGR01264       111 CIAALANAGQNILVPRPGFPLYETLAE--SMGIEVKLYNLLPDKSWEIDLKQLESLIDEKTAALIVNNPSNPCGSVFSRQ  188 (401)
T ss_pred             HHHHhCCCCCEEEEeCCCChhHHHHHH--HcCCEEEEeecCCccCCCCCHHHHHHHhccCceEEEEcCCCCCCCCCCCHH
Confidence            999999999999999999999999999  999999999887666788999999998888899999999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD  248 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~  248 (387)
                      ++++|+++|+++|+++|+||+|.++.+++....++..+....++++++||||.|+++|+|+||++++++....  .++++
T Consensus       189 ~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~iv~~~~~~~~--~~~~~  266 (401)
T TIGR01264       189 HLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRWLVPGWRLGWIIIHDRRGIL--RDIRD  266 (401)
T ss_pred             HHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccCCCccceEEEEEecCcchhH--HHHHH
Confidence            9999999999999999999999999887655556666655556999999999999999999999987422110  12444


Q ss_pred             HHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCC
Q 038416          249 SIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDI  328 (387)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  328 (387)
                      .+........+++.+.|.++..+|.+..+.++++..+.++++++.+.+.|++++++. +..|.+|+|+|++++....++.
T Consensus       267 ~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~-~~~p~~g~f~~~~~~~~~~~~~  345 (401)
T TIGR01264       267 GLVKLSQRILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVPGLR-PVMPSGAMYMMVGIEMEHFPEF  345 (401)
T ss_pred             HHHHHhhccCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-ccCCCeeeEEEEEecccccCCC
Confidence            444443323567888999999998764468899999999999999999999987776 4479999999999864222222


Q ss_pred             CcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHHh
Q 038416          329 GDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       329 ~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      .++.+++..+++++||.+.||..|+.++++||+++.+++++++++++|.++++++
T Consensus       346 ~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~~~~~~~l~~~l~rl~~~~~~~  400 (401)
T TIGR01264       346 KNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVLTVPVVMMEEACSRIQEFCERH  400 (401)
T ss_pred             CCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence            2456778888778899999999998789999999988899999999999998765

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PRK06207 aspartate aminotransferase; Provisional

Probab=100.00  E-value=5.6e-51  Score=380.38  Aligned_cols=354  Identities=20%  Similarity=0.253  Sum_probs=299.3

Q ss_pred             cCCCCCCCCCCCC-CCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCC-CCEEEcCChHHHHHH
Q 038416           11 HSPWPRRPLGVSL-LSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSP-EDVYLTLGCSQAIEI   88 (387)
Q Consensus        11 ~~~~~~~~~~~~~-~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~-~~i~~~~g~~~a~~~   88 (387)
                      ++++.|.|    + +++++.+.+++.+.+.......|++..|.++||+.|++++.+.++..+++ ++|++|+|+++++..
T Consensus        42 i~l~~g~~----~~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~  117 (405)
T PRK06207         42 VDFSHGDV----DAHEPTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFL  117 (405)
T ss_pred             eecCCcCC----CCCCCCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHH
Confidence            45666666    3 46778899999888876545679988899999999999999988877888 899999999999999


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccC---CCCCccCChhhHHHhhccCceEEEEeCCCCCccccC
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLL---PEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVF  165 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~  165 (387)
                      ++.+++++||+|+++.|+|+.+...+.  ..|.+++.++++   +++++++|+++|+++++++++++++++||||||.++
T Consensus       118 ~~~~l~~~Gd~Vlv~~P~y~~~~~~~~--~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~  195 (405)
T PRK06207        118 AVAATVARGDKVAIVQPDYFANRKLVE--FFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVFLFSNPNNPAGVVY  195 (405)
T ss_pred             HHHHhcCCCCEEEEeCCCchhHHHHHH--HcCCEEEEEeccccCcccCCCcCHHHHHHhhhhcCeEEEECCCCCCCCcCC
Confidence            999999999999999999999999999  999999998875   234688999999999988899999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccC-CCccEEEEecCcccccccccceEEEEeeCCCCcccch
Q 038416          166 SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFG-SIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNS  244 (387)
Q Consensus       166 ~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~  244 (387)
                      +.+++++|+++|+++|++||+||+|..+.+++..+.++..+. ..+++++++||||.|+++|+|+||+++++        
T Consensus       196 s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~~~--------  267 (405)
T PRK06207        196 SAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAFGSP--------  267 (405)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceEEEEcCH--------
Confidence            999999999999999999999999999988775544444332 24689999999999999999999999875        


Q ss_pred             hHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcc
Q 038416          245 GFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVS  323 (387)
Q Consensus       245 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~  323 (387)
                      ++++.+..... ...+.+.+.|.++..++++ ...++.+..+.++++++.+.+.|+.++++. +..|.+|+|+|++++..
T Consensus       268 ~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~~~p~gg~fl~~~l~~~  345 (405)
T PRK06207        268 AIIDRMEKLQAIVSLRAAGYSQAVLRTWFSE-PDGWMKDRIARHQAIRDDLLRVLRGVEGVF-VRAPQAGSYLFPRLPRL  345 (405)
T ss_pred             HHHHHHHHHHhHhccCCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHhcCCCce-ecCCCeeEEEEEeCccc
Confidence            78888877653 3445677889999888874 235677778888888999999998887777 44788999999998742


Q ss_pred             cccCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          324 MLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       324 ~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      .    .+..++...+++++||.+.||..|+.  .+++||+++.+.+++++++++|++++++++
T Consensus       346 ~----~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~~~~~l~~al~rl~~~l~~~~  404 (405)
T PRK06207        346 A----VSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQDHAAAVAAAERIAQLIERYR  404 (405)
T ss_pred             C----CCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence            1    14567888777778999999998864  579999998889999999999999998765

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=100.00  E-value=1.9e-50  Score=376.08  Aligned_cols=351  Identities=18%  Similarity=0.271  Sum_probs=291.8

Q ss_pred             ccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCC-CEEEcCChHHHHHH
Q 038416           10 RHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIEI   88 (387)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~g~~~a~~~   88 (387)
                      .++.+.|.+    ++++++.+.+++.+.+.......|++..|..+||+++++|+.+.+|.+++++ +|++|+|+++++..
T Consensus        32 ~i~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~  107 (388)
T PRK07366         32 LIDLSLGSS----DLPAPAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAH  107 (388)
T ss_pred             eEEeCCCCC----CCCCCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHH
Confidence            466777766    7888999999999988654455798888999999999999998888888998 69999999999999


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      ++.+++++||+|+++.|+|+.+...++  ..|.+++.+++++++++.+|++++++.+.++++++++++||||||.+++.+
T Consensus       108 ~~~~l~~~gd~Vlv~~P~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPTG~~~s~~  185 (388)
T PRK07366        108 LPLAVLNPGDFALLLDPGYPSHAGGVY--LAGGQIYPMPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTTAIAPLS  185 (388)
T ss_pred             HHHHhCCCCCEEEEcCCCCcchHHHHH--hcCCEEEEEECCCccCCCCCHHHHHHhhcccceEEEEeCCCCCCCccCCHH
Confidence            999999999999999999999999999  999999999997766788899999888877899999999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCC-CccccccCCC-ccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTP-YVPMGVFGSI-VPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~-~~~~~~~~~~-~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      ++++|+++|+++|++||+||+|.++.+++.. ..++..++.. .++++++||||.|+++|+|+||+++++        ++
T Consensus       186 ~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~--------~l  257 (388)
T PRK07366        186 FFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIGNA--------QL  257 (388)
T ss_pred             HHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhheehcCCH--------HH
Confidence            9999999999999999999999999886643 3445454433 468999999999999999999999865        78


Q ss_pred             HHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccc
Q 038416          247 VDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML  325 (387)
Q Consensus       247 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~  325 (387)
                      ++.+.+... ...+..+..+.++...+.. .+.++++..+.++++++.+.+.|+++ ++. +..|.+|+|+|++++....
T Consensus       258 i~~l~~~~~~~~~~~~~~~~~~a~~~l~~-~~~~l~~~~~~~~~~r~~l~~~L~~~-~~~-~~~p~~g~f~~~~~~~~~~  334 (388)
T PRK07366        258 IQALRQVKAVVDFNQYRGILNGAIAALTG-PQATVQQTVQIFRQRRDAFINALHQI-GWP-VPLPEATMYVWAKLPEPWQ  334 (388)
T ss_pred             HHHHHHHHhhcccCCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHC-CCc-ccCCCeeEEEEEECCcccC
Confidence            888877654 2223323233333344432 35788999999999999999999988 676 4478999999999874210


Q ss_pred             cCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHH
Q 038416          326 EDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFC  380 (387)
Q Consensus       326 ~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~  380 (387)
                         .++.++...+++++||.+.||..|+.  .+++||+++.+++++++++++|++++
T Consensus       335 ---~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~l~rl~~~l  388 (388)
T PRK07366        335 ---GNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVHDPDILEEAVERIAAFL  388 (388)
T ss_pred             ---CCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecCCHHHHHHHHHHHHHhC
Confidence               13566777787888999999998864  47999999888999999999998753

>PLN00175 aminotransferase family protein; Provisional

Probab=100.00  E-value=4.3e-50  Score=374.78  Aligned_cols=350  Identities=26%  Similarity=0.433  Sum_probs=301.9

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCC-CEEEcCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~g~~~a~~   87 (387)
                      ..++++.|.|    ++++++.+.+++.+.+... ...|++..|.++||+++++++.++++..++++ +|++|+|+++++.
T Consensus        55 ~~i~l~~G~P----~~~~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~  129 (413)
T PLN00175         55 GAINLGQGFP----NFDGPDFVKEAAIQAIRDG-KNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIA  129 (413)
T ss_pred             CeEecCCCCC----CCCCCHHHHHHHHHHHhcC-CCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHH
Confidence            4677788887    7888999999999988763 45899989999999999999998888888887 7999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      .++.+++++||+|++++|+|..+...++  ..|.+++.+++.++ ++.+|+++|+++++++++++++++|+||||.+++.
T Consensus       130 ~~~~~l~~~gd~Vlv~~P~y~~~~~~~~--~~g~~~~~v~~~~~-~~~~~~~~l~~~~~~~~k~i~i~~p~NPtG~~~s~  206 (413)
T PLN00175        130 ATILGLINPGDEVILFAPFYDSYEATLS--MAGAKIKTVTLRPP-DFAVPEDELKAAFTSKTRAILINTPHNPTGKMFTR  206 (413)
T ss_pred             HHHHHhCCCCCEEEEeCCCchhHHHHHH--HcCCEEEEEECCcc-cCCCCHHHHHHhcCcCceEEEecCCCCCCCcCCCH
Confidence            9999999999999999999999999999  99999999998654 37899999999998889999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      +++++|+++|+++++++|+||+|..+.+++. ..++..+.. .+++++++||||.|+++|+|+||+++++        ++
T Consensus       207 ~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~-~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~--------~l  277 (413)
T PLN00175        207 EELELIASLCKENDVLAFTDEVYDKLAFEGD-HISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPP--------HL  277 (413)
T ss_pred             HHHHHHHHHHHHcCcEEEEecccCccccCCc-ccChhhCCCCcCcEEEEecchhhccCcchheeeeEeCH--------HH
Confidence            9999999999999999999999999888653 334444433 4689999999999999999999999975        78


Q ss_pred             HHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccc
Q 038416          247 VDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML  325 (387)
Q Consensus       247 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~  325 (387)
                      ++.+..... ...+++.+.|.++..+|+. .+.++++..+.++++++.+.+.|+++ ++. +..|.+|+|+|++++... 
T Consensus       278 ~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~p~g~~f~~~~~~~~~-  353 (413)
T PLN00175        278 TWGVRQAHSFLTFATATPMQWAAVAALRA-PESYYEELKRDYSAKKDILVEGLKEV-GFK-VYPSSGTYFVMVDHTPFG-  353 (413)
T ss_pred             HHHHHHHHhhccCCCCHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHC-CCe-ecCCCeeEEEEEeccccC-
Confidence            888877654 4567888999999999975 35778899999999999999999988 677 447889999999874311 


Q ss_pred             cCCCcHHHHHHHHHHhcCeEEEcCCccCC-----CCeEEEEeeCChHhHHHHHHHHHHHHH
Q 038416          326 EDIGDDLEFCLKLAKEESVIILPGRTVGM-----KNWLRIAFAAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       326 ~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-----~~~~Ri~~~~~~e~~~~~~~~l~~~~~  381 (387)
                        ..++.+++..+++++||.+.||..|+.     .+++||+++.+++++++++++|++.++
T Consensus       354 --~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~~~e~l~~~~~rL~~~~~  412 (413)
T PLN00175        354 --FENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCKDEETLRAAVERMKTKLK  412 (413)
T ss_pred             --CCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHh
Confidence              124568888888888999999998842     469999999899999999999998876

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=100.00  E-value=3e-50  Score=386.04  Aligned_cols=370  Identities=25%  Similarity=0.444  Sum_probs=301.6

Q ss_pred             ccccccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChH
Q 038416            4 RKGQETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCS   83 (387)
Q Consensus         4 ~~g~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~   83 (387)
                      .+|+ .++++..|+|..+ ++++|+.+.+++.+.+..  ..+|++..|..+||++|++++..+.+..+++++|++|+|++
T Consensus       143 ~~g~-~~i~l~~G~p~~~-~~~~p~~~~~~~~~~~~~--~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~  218 (517)
T PRK13355        143 AAGT-HILKLNIGNPAPF-GFRTPDEVVYDMAQQLTD--TEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVS  218 (517)
T ss_pred             HcCC-CeEEecCcCCCcC-CCCCCHHHHHHHHHHhhc--CCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHH
Confidence            3443 4567778888433 588899999999988764  35799989999999999999987665568899999999999


Q ss_pred             HHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccc
Q 038416           84 QAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGN  163 (387)
Q Consensus        84 ~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~  163 (387)
                      +++..++.+++++||+|+++.|+|+.|...+.  ..|.+++.++++++++|.+|+++++++++++++++++++||||||.
T Consensus       219 eal~~~~~~l~~~Gd~Vli~~P~y~~y~~~~~--~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~k~i~i~nP~NPTG~  296 (517)
T PRK13355        219 ELINLSMSALLDDGDEVLIPSPDYPLWTACVN--LAGGTAVHYRCDEQSEWYPDIDDIRSKITSRTKAIVIINPNNPTGA  296 (517)
T ss_pred             HHHHHHHHHhCCCCCEEEEcCCCCcCHHHHHH--HCCCEEEEeecCcccCCCCCHHHHHHhcCcCceEEEEECCCCCCCc
Confidence            99999999999999999999999999999999  9999999999877778999999999999889999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccc
Q 038416          164 VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQN  243 (387)
Q Consensus       164 ~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~  243 (387)
                      +++.+++++|+++|++|+++||+||+|..+.|++....++..+..+..+++++||||.|+++|+|+||++++.+..+.  
T Consensus       297 v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~i~~~~~~~~--  374 (517)
T PRK13355        297 LYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAGYRIGWMILSGNKRIA--  374 (517)
T ss_pred             CcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhccCcccceEEEEeeCchhhH--
Confidence            999999999999999999999999999999987765556655555445788899999999999999999975321100  


Q ss_pred             hhHHHHHHhhhhccCCcchHHHHHHHHHhhhcc--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecC
Q 038416          244 SGFVDSIKGCLNAASHPVTFIQAAVPRIVDETN--EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLN  321 (387)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~  321 (387)
                      .++++.+........+.+.++|.++..+|....  +.++.+. +++.++++.+.+.|+++|++. +..|.+++|+|++++
T Consensus       375 ~~~~~~l~~~~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~-~~~~~~r~~l~~~L~~~~g~~-~~~p~g~fy~~~~l~  452 (517)
T PRK13355        375 KDYIEGLNMLANMRLCSNVPAQSIVQTALGGHQSVKDYLVPG-GRVYEQRELVYNALNAIPGIS-AVKPKAAFYIFPKID  452 (517)
T ss_pred             HHHHHHHHHHhcCcCCcChHHHHHHHHHhcCCccHHHHHHHH-HHHHHHHHHHHHHHhcCCCcc-cCCCCeeeEEEeecC
Confidence            023444433333335677889999988886421  3444443 345566789999999988888 558999999999886


Q ss_pred             cccccCCCcHHHHHHHHHHhcCeEEEcCCccC--CCCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          322 VSMLEDIGDDLEFCLKLAKEESVIILPGRTVG--MKNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       322 ~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~--~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      ....+ ..++.+++..+++++||.+.||..|+  .+++|||+++.+++++++++++|++++++++
T Consensus       453 ~~~~~-~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~~~~~~l~~a~~rl~~~~~~~~  516 (517)
T PRK13355        453 VKKFN-IHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYLPRLEDLEDAMDRLADFFSYYR  516 (517)
T ss_pred             cccCC-CCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeCCCHHHHHHHHHHHHHHHHHhh
Confidence            42111 12456788888899999999999996  3689999998889999999999999998764

>PRK07681 aspartate aminotransferase; Provisional

Probab=100.00  E-value=5.2e-50  Score=374.12  Aligned_cols=348  Identities=21%  Similarity=0.336  Sum_probs=299.2

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCC-CCEEEcCChHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSP-EDVYLTLGCSQAI   86 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~-~~i~~~~g~~~a~   86 (387)
                      +..++.+.|.|    ++++++.+.+++.+.+.....++|+ ..|..+||++|++|+.+.++..+++ ++|++|+|+++++
T Consensus        32 ~~~i~l~~g~p----~~~~~~~~~~~~~~~~~~~~~~~y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al  106 (399)
T PRK07681         32 HKMIDLSIGNP----DMPPADFVREEMVHTANQKESYGYT-LSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGL  106 (399)
T ss_pred             CCeEEeCCCCC----CCCCCHHHHHHHHHHHhccccCCCC-CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHH
Confidence            34567777766    6788999999999887654344565 3799999999999999888888888 8999999999999


Q ss_pred             HHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCC
Q 038416           87 EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFS  166 (387)
Q Consensus        87 ~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  166 (387)
                      ..++.+++++||.|+++.|+|+.+...+.  ..|.+++.++++++++|.+|++++++++.++++++++++||||||.+++
T Consensus       107 ~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~--~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s  184 (399)
T PRK07681        107 VHLPMVYANPGDIILVPDPGYTAYETGIQ--MAGATSYYMPLKKENDFLPDLELIPEEIADKAKMMILNFPGNPVPAMAH  184 (399)
T ss_pred             HHHHHHhCCCCCEEEECCCCccchHHHHH--hcCCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCcCcCCC
Confidence            99999999999999999999999999999  9999999999977777889999999988888999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEeeCCCCcccchh
Q 038416          167 YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSG  245 (387)
Q Consensus       167 ~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~  245 (387)
                      .+++++|+++|+++|++||+||+|.++.+++....++..++. .+++++++||||.|+++|+|+||+++++        +
T Consensus       185 ~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~~~--------~  256 (399)
T PRK07681        185 EDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIGNE--------E  256 (399)
T ss_pred             HHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCccceeEEEecCH--------H
Confidence            999999999999999999999999999887655555544443 3578999999999999999999999865        7


Q ss_pred             HHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccc
Q 038416          246 FVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSM  324 (387)
Q Consensus       246 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~  324 (387)
                      +++.+..... ...+++.+.|.++..++++. +.++++..+.++++++.+.+.|+++ ++. +..|.+|+|+|++++.. 
T Consensus       257 l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~p~~g~f~~~~l~~~-  332 (399)
T PRK07681        257 IVRALTQFKSNTDYGVFLPIQKAACAALRNG-AAFCEKNRGIYQERRDTLVDGFRTF-GWN-VDKPAGSMFVWAEIPKG-  332 (399)
T ss_pred             HHHHHHHHHhhcccCCCHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHC-CCc-ccCCCeeeEEEEECCCC-
Confidence            8888877653 45678888999999998753 4678888889999999999999988 677 44788999999998642 


Q ss_pred             ccCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHH
Q 038416          325 LEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKA  378 (387)
Q Consensus       325 ~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~  378 (387)
                          .++.++...+++++||.+.||..|+.  ++++||+++.+++++++++++|++
T Consensus       333 ----~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~l~~l~~  384 (399)
T PRK07681        333 ----WTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQDEEVLQQAVENIRN  384 (399)
T ss_pred             ----CCHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHHHHH
Confidence                24667888888878999999988865  479999999888999999999987

>PRK06855 aminotransferase; Validated

Probab=100.00  E-value=7.9e-50  Score=375.22  Aligned_cols=366  Identities=24%  Similarity=0.389  Sum_probs=298.2

Q ss_pred             ccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHH
Q 038416           10 RHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEIS   89 (387)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~   89 (387)
                      +++.+.|+|... ++++|+.+.+++.+.+......+|++..|..+||+++++|+.++++..+++++|++|+|+++++..+
T Consensus        34 ~~~~~~G~p~~~-~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~  112 (433)
T PRK06855         34 ITWENIGDPIAK-GEKIPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKI  112 (433)
T ss_pred             ccccccCCCccc-CCCCCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHH
Confidence            455678887432 6899999999999988655556899989999999999999999888889999999999999999999


Q ss_pred             HHhhcCCCCeEEEcCCCCcchHHHh-hccCCCceeeeeccCCCCCccCChhhHHHhhc--cCceEEEEeCCCCCccccCC
Q 038416           90 LSVLARPGANILIPRPGYPLYEIHA-AGSNNNLEARHYDLLPEKRWEVDLDGVEALAD--ENTVAIVIINPGNPCGNVFS  166 (387)
Q Consensus        90 ~~~l~~~g~~vl~~~p~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~v~l~~p~nptG~~~~  166 (387)
                      +. ++++||.|++++|+|+.+.... .  ..|.+++.++++++++|.+|+++|+++++  ++++++++++||||||.++|
T Consensus       113 ~~-l~~~Gd~Vlv~~P~Y~~~~~~~~~--~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~~s  189 (433)
T PRK06855        113 YG-LLRREARVIGPSPAYSTHSSAEAA--HAGYPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILLINPDNPTGAVYP  189 (433)
T ss_pred             HH-hcCCCCeEEEeCCCCchHHHHHHH--hcCCeEEEEecccccCCCCCHHHHHHHHhcCCCceEEEEECCCCCCCcCCC
Confidence            85 7899999999999999876542 3  45888888888766778899999999886  35788999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccch--
Q 038416          167 YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNS--  244 (387)
Q Consensus       167 ~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~--  244 (387)
                      .+++++|+++|+++|++||+||+|..+.|.+..+.++..+..+.++++++||||.|+++|+|+||++++++..   ++  
T Consensus       190 ~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~p~~~~---~~~~  266 (433)
T PRK06855        190 KEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRCGWIEVYNADK---DEVF  266 (433)
T ss_pred             HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceEEEEEEeCCch---hhHH
Confidence            9999999999999999999999999998877555566555444467999999999999999999999853110   01  


Q ss_pred             -hHHHHHHhhhhccCCcchHHHHHHHHHhhhcc-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCc
Q 038416          245 -GFVDSIKGCLNAASHPVTFIQAAVPRIVDETN-EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNV  322 (387)
Q Consensus       245 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~  322 (387)
                       .+++.+........+++.+.|.++..++.+.. +.++++..+.++++++.+.+.|++++++. +..|.+|+|+|++++.
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~-~~~p~gg~~~w~~l~~  345 (433)
T PRK06855        267 KKYINSILNAKMIEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVPGLK-VNRTNGAFYMTVVFED  345 (433)
T ss_pred             HHHHHHHHHhhccccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCee-ccCCCeeEEEeecccc
Confidence             23333333322234577889999999997643 67889999999999999999998887777 5589999999999975


Q ss_pred             ccc--------c-------------C-CCcHHHHHHHHHHhcCeEEEcCCccCC-CCeEEEEeeC-ChHhHHHHHHHHHH
Q 038416          323 SML--------E-------------D-IGDDLEFCLKLAKEESVIILPGRTVGM-KNWLRIAFAA-EPATLEDGLERIKA  378 (387)
Q Consensus       323 ~~~--------~-------------~-~~~~~~~~~~ll~~~gi~v~~g~~~~~-~~~~Ri~~~~-~~e~~~~~~~~l~~  378 (387)
                      ...        .             + ..++.+++..+++++||.+.||..|+. .+++||+++. +.+++++++++|++
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~~~~Rls~~~~~~~~i~~~~~~l~~  425 (433)
T PRK06855        346 GVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTELNGFRVTLLERDEEKFEWIYQTLAE  425 (433)
T ss_pred             ccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCCCCceEEEECCCcHHHHHHHHHHHHH
Confidence            310        0             0 013567787888899999999999964 3579999974 88999999999999


Q ss_pred             HHHHh
Q 038416          379 FCQRH  383 (387)
Q Consensus       379 ~~~~~  383 (387)
                      ++++.
T Consensus       426 ~~~~~  430 (433)
T PRK06855        426 KIEEY  430 (433)
T ss_pred             HHHHH
Confidence            99764

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-49  Score=343.20  Aligned_cols=356  Identities=24%  Similarity=0.403  Sum_probs=314.8

Q ss_pred             ccccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHH
Q 038416            6 GQETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQA   85 (387)
Q Consensus         6 g~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a   85 (387)
                      |.+.+...|+-    ++||++||.+++|+++.+..+. .+|+  .+..++.++++.|..+++++..+++.|++++|...+
T Consensus        23 g~~DvlPmWVA----DMDf~~pp~i~~Al~~rvdhGv-fGY~--~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpg   95 (388)
T COG1168          23 GNEDVLPMWVA----DMDFPTPPEIIEALRERVDHGV-FGYP--YGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPG   95 (388)
T ss_pred             CCCCcceeeee----cccCCCCHHHHHHHHHHHhcCC-CCCC--CCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHh
Confidence            55677778884    5599999999999999999874 4787  466889999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCC-CCccCChhhHHHhhccC-ceEEEEeCCCCCccc
Q 038416           86 IEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPE-KRWEVDLDGVEALADEN-TVAIVIINPGNPCGN  163 (387)
Q Consensus        86 ~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~v~l~~p~nptG~  163 (387)
                      +..+++.|.++||.|++..|.|+++.....  ..|.++...|+..+ +.|.+|.++||+++.+. .++.++||||||||.
T Consensus        96 i~~~I~~~T~~gd~Vvi~tPvY~PF~~~i~--~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Gr  173 (388)
T COG1168          96 ISLAIRALTKPGDGVVIQTPVYPPFYNAIK--LNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGR  173 (388)
T ss_pred             HHHHHHHhCcCCCeeEecCCCchHHHHHHh--hcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCc
Confidence            999999999999999999999999999999  99999999998744 45888999999988665 589999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCC--ccEEEEecCcccccccccceEEEEeeCCCCcc
Q 038416          164 VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSI--VPVITLGSISKRWIVPGWRLGWLVTSDPNGIL  241 (387)
Q Consensus       164 ~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~  241 (387)
                      +++.+++.+|.++|.+||+.||.||+|+++.+.|+.+.++.+++.+  ++.+++.|.||+|.++|+++++++.+++    
T Consensus       174 vwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~----  249 (388)
T COG1168         174 VWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNR----  249 (388)
T ss_pred             cccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCH----
Confidence            9999999999999999999999999999999999877777776654  6899999999999999999999999873    


Q ss_pred             cchhHHHHHHhhh--hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCCceEEEEE
Q 038416          242 QNSGFVDSIKGCL--NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE-IPCITCPVKPQGAMFVMV  318 (387)
Q Consensus       242 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~g~~~~~  318 (387)
                         ++..++.+..  .....+|.++..|...+.++ ++.|+++..+.++.|++++.+.+.+ +|++. +..|++++.+|+
T Consensus       250 ---~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~-G~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~-v~~p~gTYL~WL  324 (388)
T COG1168         250 ---ELRAKFLKRLKRNGLHGPSALGIIATEAAYNQ-GEPWLDELLEYLKDNRDYVADFLNKHLPGVK-VTEPQGTYLAWL  324 (388)
T ss_pred             ---HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHHhhCCCcE-EecCCCceeeee
Confidence               3444444332  34568899999999888885 6789999999999999999999997 79999 559999999999


Q ss_pred             ecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHHHh
Q 038416          319 KLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      ++.....    ++.+....++.+.+|.+.+|..|+.  .+++|++++++.+.+++++++|+.+++..
T Consensus       325 D~r~l~l----~d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~acpr~~L~eal~ri~~al~~~  387 (388)
T COG1168         325 DCRELGL----DDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFACPRAILEEALERLKRALKKR  387 (388)
T ss_pred             eccccCC----ChHHHHHHHHHhhcEeccCCCccCcCCCceEEEecCCCHHHHHHHHHHHHHHHhcc
Confidence            9987654    5567888888999999999999987  47999999999999999999999988764

>PRK08636 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3.2e-49  Score=369.07  Aligned_cols=358  Identities=20%  Similarity=0.297  Sum_probs=296.4

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCC-CEEEcCChHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAI   86 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~g~~~a~   86 (387)
                      +.+.+++.|+|    +.+.++.+.+++.+.........|++..|..+||+.+++|+.+.+++.++++ +|++|+|+++++
T Consensus        33 ~~~~~l~~g~p----~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al  108 (403)
T PRK08636         33 EDIIDFSMGNP----DGPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGY  108 (403)
T ss_pred             CCEEEcCCcCC----CCCCCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHH
Confidence            44577778776    5666777788877766544456899989999999999999998888888887 799999999999


Q ss_pred             HHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhH----HHhhc---cCceEEEEeCCCC
Q 038416           87 EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGV----EALAD---ENTVAIVIINPGN  159 (387)
Q Consensus        87 ~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l----~~~~~---~~~~~v~l~~p~n  159 (387)
                      ..++.+++++||.|++++|+|+.+...+.  ..|.+++.++++.++++++|++.+    +++++   ++++++++++|||
T Consensus       109 ~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~N  186 (403)
T PRK08636        109 VHLVQAITNPGDVAIVPDPAYPIHSQAFI--LAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHN  186 (403)
T ss_pred             HHHHHHhCCCCCEEEEcCCCCcchHHHHH--hcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCC
Confidence            99999999999999999999999999999  999999999886555678887754    55553   4688999999999


Q ss_pred             CccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEeeCCC
Q 038416          160 PCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPN  238 (387)
Q Consensus       160 ptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~  238 (387)
                      |||.++|.+++++|+++|++|+++||+||+|.++.+++....++..++. .+++++++||||.|+++|+|+||+++++  
T Consensus       187 PTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv~~~--  264 (403)
T PRK08636        187 PTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGWRVGFVVGNK--  264 (403)
T ss_pred             CCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCccceeeeeeCCH--
Confidence            9999999999999999999999999999999999887654555555543 2467889999999999999999999875  


Q ss_pred             CcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEE
Q 038416          239 GILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVM  317 (387)
Q Consensus       239 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~  317 (387)
                            ++++.+.+... ...+.+.+.|.++..++.. .+.++++..+.++++++.+.+.|++. ++. +..|.+|+|+|
T Consensus       265 ------~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~~~p~~g~~~~  335 (403)
T PRK08636        265 ------KLVGALKKIKSWLDYGMFTPIQVAATIALDG-DQSCVEEIRETYRKRRDVLIESFANA-GWE-LQKPRASMFVW  335 (403)
T ss_pred             ------HHHHHHHHHHHHhcccCChHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHC-CCc-ccCCCcceEEE
Confidence                  78888877654 2345667778777766653 46788888999999999999999987 676 44789999999


Q ss_pred             EecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      ++++.... . .++.+++..+++++||.+.||..|+.  .+++||+++.+++++++++++|+++++.+.
T Consensus       336 ~~l~~~~~-~-~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~~~rl~~~l~~~~  402 (403)
T PRK08636        336 AKIPEPAR-H-LGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALIENENRIRQAARNIKKFLKELE  402 (403)
T ss_pred             EECCCccC-C-CCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEecCCHHHHHHHHHHHHHHHHhhc
Confidence            99874210 0 13567888888888999999998865  479999999889999999999999998764

>PRK08960 hypothetical protein; Provisional

Probab=100.00  E-value=2.6e-49  Score=368.17  Aligned_cols=350  Identities=24%  Similarity=0.377  Sum_probs=298.3

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      .+++++.|.|    ++++|+.+.+++.+.+.... ..|.+..|.+++|+.+++++.+.++..+++++|++|+|+++++..
T Consensus        33 ~~i~l~~g~~----~~~~~~~v~~a~~~~~~~~~-~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~  107 (387)
T PRK08960         33 DVIHLEIGEP----DFTTAEPIVAAGQAALAAGH-TRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLL  107 (387)
T ss_pred             CeEEeCCCCC----CCCCCHHHHHHHHHHHhcCC-CccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHH
Confidence            3456667666    67889999999999887543 468878899999999999999888888899999999999999999


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      ++.+++++||+|++++|+|+.+...+.  ..|.++..++++.++++.+|++.++++++++++++++++|+||||.++|.+
T Consensus       108 ~~~~~~~~gd~vlv~~p~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~  185 (387)
T PRK08960        108 ASSLLVDPGKHWLLADPGYPCNRHFLR--LVEGAAQLVPVGPDSRYQLTPALVERHWNADTVGALVASPANPTGTLLSRD  185 (387)
T ss_pred             HHHHhcCCCCEEEEcCCCCcchHHHHH--hcCCeEEEEecCcccCCCCCHHHHHHHhCccceEEEEECCCCCCCcCcCHH
Confidence            999999999999999999999999999  899999999987666788999999999988899999999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD  248 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~  248 (387)
                      ++++|+++|+++|+++|+||+|.++.+++. ..++..+  .+++++++||||.|+++|+|+||+++++        ++++
T Consensus       186 ~~~~l~~~~~~~~~~li~De~Y~~~~~~~~-~~~~~~~--~~~vi~~~S~SK~~g~~GlRiG~~~~~~--------~~~~  254 (387)
T PRK08960        186 ELAALSQALRARGGHLVVDEIYHGLTYGVD-AASVLEV--DDDAFVLNSFSKYFGMTGWRLGWLVAPP--------AAVP  254 (387)
T ss_pred             HHHHHHHHHHHcCCEEEEEccccccccCCC-CCChhhc--cCCEEEEeecccccCCcccEEEEEEcCH--------HHHH
Confidence            999999999999999999999999877543 2233333  3579999999999999999999999975        6888


Q ss_pred             HHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccC
Q 038416          249 SIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLED  327 (387)
Q Consensus       249 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  327 (387)
                      .+.+... ...+++.+.|.++..++.+..+.++.+..+.++++++.+.+.|+++ ++.++..|.+|+|+|++++...   
T Consensus       255 ~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~p~g~~f~~~~~~~~~---  330 (387)
T PRK08960        255 ELEKLAQNLYISASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPALREL-GFGIAVEPQGAFYLYADISAFG---  330 (387)
T ss_pred             HHHHHHhhhccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhc-CCcCCcCCCeeEEEEEeccccC---
Confidence            8876643 4456788899988888865445788888999999999999999987 6664447889999999987421   


Q ss_pred             CCcHHHHHHHHHHhcCeEEEcCCccCC---CCeEEEEeeCChHhHHHHHHHHHHHHH
Q 038416          328 IGDDLEFCLKLAKEESVIILPGRTVGM---KNWLRIAFAAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       328 ~~~~~~~~~~ll~~~gi~v~~g~~~~~---~~~~Ri~~~~~~e~~~~~~~~l~~~~~  381 (387)
                       .++.++...+++++||.+.||..|+.   ++++||+++.+.+++.+++++|+++++
T Consensus       331 -~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~~~~~l~~al~~l~~~~~  386 (387)
T PRK08960        331 -GDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQSLPRLQEAVERIARGLR  386 (387)
T ss_pred             -CCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence             14567877887888999999998865   469999998888999999999988765

>PRK06107 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3.2e-49  Score=368.97  Aligned_cols=359  Identities=21%  Similarity=0.357  Sum_probs=306.4

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      ..++.+.|.|    ++++++.+.+++.+.+... ..+|++..|..+||+++++++.+.++..+.+++|++|+|+++|+..
T Consensus        34 ~~i~l~~g~p----~~~~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~  108 (402)
T PRK06107         34 SIVDLTVGEP----DFDTPDHIKQAAVAAIERG-ETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFL  108 (402)
T ss_pred             CEEEcCCCCC----CCCCCHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHH
Confidence            3466778776    7778899999999988754 3579998999999999999999888887889999999999999999


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      ++.+++++||+|+++.|+|..|...+.  ..+.+++.++++.++++.+|++++++.++++++++++++|+||||.++|.+
T Consensus       109 ~~~~~~~~gd~vl~~~p~y~~y~~~~~--~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~  186 (402)
T PRK06107        109 ALMATLEAGDEVIIPAPYWVSYPDMVL--ANDGTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNAPSNPTGAVYSRA  186 (402)
T ss_pred             HHHHhcCCCCEEEEecCCCcCHHHHHH--HcCCEEEEecCCcccCCCCCHHHHHhhcCcCceEEEEECCCCCCCcCcCHH
Confidence            999999999999999999999988888  888888888876556778999999999988899999999999999999999


Q ss_pred             HHHHHHHHHHhc-CcEEeecccccccccCCCCCccccccCC--CccEEEEecCcccccccccceEEEEeeCCCCcccchh
Q 038416          169 HLQKIARTARNL-GIIVIADEVYNHLAFGSTPYVPMGVFGS--IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSG  245 (387)
Q Consensus       169 ~~~~l~~~~~~~-~~~li~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~  245 (387)
                      ++++++++|+++ ++++|+||+|+.+.|.+....++..+..  .+++++++||||.|+++|+|+||+++++        +
T Consensus       187 ~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~~~--------~  258 (402)
T PRK06107        187 ELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGPA--------D  258 (402)
T ss_pred             HHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeeeecCH--------H
Confidence            999999999998 9999999999998887655555544432  3589999999999999999999999875        7


Q ss_pred             HHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcc-
Q 038416          246 FVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVS-  323 (387)
Q Consensus       246 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~-  323 (387)
                      +++.+..... ....++.+.|.++..+|+. .+.++++..+.++++++.+.+.|++++++. +..|++|+|+|++++.. 
T Consensus       259 ~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~-~~~p~gg~~~~~~~~~~~  336 (402)
T PRK06107        259 LIAAINKLQSQSSSCPSSISQAAAAAALNG-DQSFVTESVAVYKQRRDYALALLNAIPGLS-CLVPDGAFYLYVNCAGLI  336 (402)
T ss_pred             HHHHHHHHHHhcccCCChHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCCc-ccCCCcceEEeeeccccc
Confidence            8888887764 4567899999999999974 357788889999999999999999887777 45889999999987421 


Q ss_pred             --ccc-C--CCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          324 --MLE-D--IGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       324 --~~~-~--~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                        ..+ +  ..+..+++..+++++||.+.||..|+..+++||+++.+++++++++++|++++++++
T Consensus       337 ~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~~~~e~l~~~l~~l~~~l~~~~  402 (402)
T PRK06107        337 GKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIATSLETLEEACARIERAVAALR  402 (402)
T ss_pred             ccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCCCHHHHHHHHHHHHHHHHhcC
Confidence              001 1  114567787888889999999999988899999999999999999999999988753

>PRK06348 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3.4e-49  Score=366.81  Aligned_cols=349  Identities=23%  Similarity=0.442  Sum_probs=296.1

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      ..++++.|.|    ++++++.+.+++.+..... ...|++..|..+||+.+++++.+.++..+++++|++|+|+++++..
T Consensus        30 ~~i~l~~g~p----~~~~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~  104 (384)
T PRK06348         30 DIIDLSLGDP----DLITDESIINAAFEDAKKG-HTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYL  104 (384)
T ss_pred             CcEEcCCCCC----CCCCCHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHH
Confidence            3567778776    6777888887666655433 4689998999999999999999888888999999999999999999


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      ++.+++++||+|+++.|+|..+...+.  ..|.+++.+++.+++++.+|+++++++++++++++++++||||||.++|.+
T Consensus       105 ~~~~~~~~gd~vlv~~p~y~~~~~~~~--~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~  182 (384)
T PRK06348        105 ALQSILDPGDEVIIHEPYFTPYKDQIE--MVGGKPIILETYEEDGFQINVKKLEALITSKTKAIILNSPNNPTGAVFSKE  182 (384)
T ss_pred             HHHHhcCCCCEEEEeCCCCcchHHHHH--HcCCEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEEeCCCCCCCcCCCHH
Confidence            999999999999999999999999999  999999998876566788999999999888899999999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      ++++|+++|++++++||+||+|.++.+++. ..++..+.. .+++++++||||.|+++|+|+||+++++        +++
T Consensus       183 ~~~~l~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~~~--------~~~  253 (384)
T PRK06348        183 TLEEIAKIAIEYDLFIISDEVYDGFSFYED-FVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAPD--------YII  253 (384)
T ss_pred             HHHHHHHHHHHCCeEEEEecccccceeCCC-ccchhhcCCCcCcEEEEecchhccCCccccceeeecCH--------HHH
Confidence            999999999999999999999999887652 334444432 4689999999999999999999999975        677


Q ss_pred             HHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccccc
Q 038416          248 DSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE  326 (387)
Q Consensus       248 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~  326 (387)
                      +.+..... ...+++.+.|.++..++.. .+.++++..+.++++++.+.+.|+.++++. +..|++|+|+|++++...  
T Consensus       254 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~-~~~p~gg~~~~~~~~~~~--  329 (384)
T PRK06348        254 ETAKIINEGICFSAPTISQRAAIYALKH-RDTIVPLIKEEFQKRLEYAYKRIESIPNLS-LHPPKGSIYAFINIKKTG--  329 (384)
T ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHhcCCCce-eccCCeeEEEEEecccCC--
Confidence            87776654 3466788899999888874 456778888889999999999999887776 447889999999986321  


Q ss_pred             CCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHH
Q 038416          327 DIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAF  379 (387)
Q Consensus       327 ~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~  379 (387)
                        .++.+++..+++++||.+.||..|+.  .+++||+++.+.+++++++++|++.
T Consensus       330 --~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~  382 (384)
T PRK06348        330 --LSSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACTVGIEVLEEAFNRIEKM  382 (384)
T ss_pred             --CCHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEecCCHHHHHHHHHHHHhh
Confidence              15677888887788999999999875  4799999988899999999998753

>PRK08068 transaminase; Reviewed

Probab=100.00  E-value=3.5e-49  Score=367.57  Aligned_cols=349  Identities=21%  Similarity=0.324  Sum_probs=293.4

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCC-CEEEcCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~g~~~a~~   87 (387)
                      ..++++.|+|    +++.++.+.+++.+.+.......|++..|..+||+++++|+.+.++..++++ +|++|+|+++++.
T Consensus        33 ~~i~l~~~~p----~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~  108 (389)
T PRK08068         33 DVINLGQGNP----DQPTPEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLV  108 (389)
T ss_pred             CeEEecCCCC----CCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHH
Confidence            3467777766    6777888999999988765556898888999999999999988888778888 8999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      .++.+++++||+|+++.|+|..+...++  ..|+++..++++.++++.+|+++++++++++++++++++||||||.++|.
T Consensus       109 ~~~~~~~~~gd~vlv~~P~y~~~~~~~~--~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPTG~~~s~  186 (389)
T PRK08068        109 ELPQCLMNPGDTILVPDPGYPDYLSGVA--LARAQFETMPLIAENNFLPDYTKIPEEVAEKAKLMYLNYPNNPTGAVATK  186 (389)
T ss_pred             HHHHHhCCCCCEEEEcCCCCcchHHHHH--hcCCEEEEeecccccCCCCCHHHHHHhccccceEEEEECCCCCCCCcCCH
Confidence            9999999999999999999999999999  99999999998766678899999999888789999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccc-cCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV-FGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      +++++|+++|+++++++|+||+|.++.+++....++.. .+..+++++++||||.|+++|+|+||+++++        ++
T Consensus       187 ~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~--------~l  258 (389)
T PRK08068        187 AFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVGNE--------SV  258 (389)
T ss_pred             HHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCccceeEeEecCH--------HH
Confidence            99999999999999999999999998876533333322 2334578999999999999999999999865        78


Q ss_pred             HHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccc
Q 038416          247 VDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML  325 (387)
Q Consensus       247 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~  325 (387)
                      ++.+.+... ...+.+++.|.++..++.. ...++++..+.++++++.+.+.|+++ ++. +..|.+|+|+|++++..  
T Consensus       259 ~~~l~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~r~~~~~~L~~~-g~~-~~~~~g~~~~~v~~~~~--  333 (389)
T PRK08068        259 IEAINLLQDHLFVSLFGAIQDAAIEALLS-DQSCVAELVARYESRRNAFISACREI-GWE-VDAPKGSFFAWMPVPKG--  333 (389)
T ss_pred             HHHHHHHHhhccCCCChHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHC-CCc-ccCCCeeEEEEEECCCC--
Confidence            888877654 2334455577777777754 34778889999999999999999988 676 54788899999988642  


Q ss_pred             cCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHH
Q 038416          326 EDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAF  379 (387)
Q Consensus       326 ~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~  379 (387)
                         .++.++...+++++||.+.||..|+.  .+++||+++.+++.+.+++++|+++
T Consensus       334 ---~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~  386 (389)
T PRK08068        334 ---YTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLTDEERLREAVERIGKL  386 (389)
T ss_pred             ---CCHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEcCCHHHHHHHHHHHHHh
Confidence               24667888887778999999988875  5799999988888999999888753

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=100.00  E-value=4e-49  Score=367.06  Aligned_cols=347  Identities=23%  Similarity=0.372  Sum_probs=295.2

Q ss_pred             ccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCC-CEEEcCChHHHHHH
Q 038416           10 RHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIEI   88 (387)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~g~~~a~~~   88 (387)
                      .++.+.|+|    ++++++.+.+++.+.+.......|++..|.++||+++++|+++.++..++++ +|++|+|+++++..
T Consensus        33 ~i~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~  108 (385)
T PRK09276         33 VISLGIGDP----DLPTPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAH  108 (385)
T ss_pred             EEEecCCCC----CCCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHH
Confidence            466777766    6788999999999988654456899888999999999999998778777777 59999999999999


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      ++.+++++||+|++++|+|+.+...++  ..|.+++.+++..++++.+|++++++.+.+++++|++++|+||||.+++.+
T Consensus       109 ~~~~~~~~gd~Vl~~~P~y~~~~~~~~--~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~  186 (385)
T PRK09276        109 IPLAFVNPGDVVLVPDPGYPVYKIGTI--FAGGEPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFINYPNNPTGAVADLE  186 (385)
T ss_pred             HHHHhCCCCCEEEEcCCCCcChHHHHH--HcCCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCCCCCCCHH
Confidence            999999999999999999999999999  999999999987666788899999998888899999999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      ++++|+++|+++++++|+||+|..+.+++....++..++. .+++++++||||.|+++|+|+||+++++        +++
T Consensus       187 ~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~~--------~l~  258 (385)
T PRK09276        187 FFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVGNA--------DLI  258 (385)
T ss_pred             HHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhheeeeCCH--------HHH
Confidence            9999999999999999999999998887655555555543 3568999999999999999999999875        688


Q ss_pred             HHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccccc
Q 038416          248 DSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE  326 (387)
Q Consensus       248 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~  326 (387)
                      +.+.+... ...+.+.+.|.++..++.. .+.++++..+.++++++.+.+.|+++ ++. +..|.+|+|+|++++..   
T Consensus       259 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~~~~~~~~~~~v~~~~~---  332 (385)
T PRK09276        259 AGLGKVKSNVDSGVFQAIQEAGIAALNG-PQEVVEELRKIYQERRDILVEGLRKL-GLE-VEPPKATFYVWAPVPKG---  332 (385)
T ss_pred             HHHHHHHhhccCCCCHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHHHHHHHhC-CCc-ccCCCcceEEEEECCCC---
Confidence            88877643 3445666788888888864 46778888899999999999999988 677 44788899999998642   


Q ss_pred             CCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHH
Q 038416          327 DIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKA  378 (387)
Q Consensus       327 ~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~  378 (387)
                        .+..++...+++++||.+.||..|+.  ++++||+++.+++++.+++++|.+
T Consensus       333 --~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~  384 (385)
T PRK09276        333 --YTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALTVPDERIEEAVERIKK  384 (385)
T ss_pred             --CCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeCCCHHHHHHHHHHHhh
Confidence              25667888888788999999988865  479999999888999999998864

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=100.00  E-value=8.1e-49  Score=364.74  Aligned_cols=348  Identities=24%  Similarity=0.377  Sum_probs=296.7

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCC-CEEEcCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~g~~~a~~   87 (387)
                      ...+++.|+|    ++++++.+.+++.+.+.......|++..|..+||+++++|+.+.++..++++ +|++|+|+++++.
T Consensus        30 ~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~  105 (383)
T TIGR03540        30 DVISLGIGDP----DLPTPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIA  105 (383)
T ss_pred             CeEEeCCCCC----CCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHH
Confidence            3456777766    6788999999999887655556899888999999999999998878777776 6999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      .++..++++||+|+++.|+|+.+...++  ..|.++..+++..++++.+|++++++.+.++++++++++||||||.+++.
T Consensus       106 ~~~~~~~~~gd~vlv~~P~y~~~~~~~~--~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~i~~P~NPtG~~~~~  183 (383)
T TIGR03540       106 HIPLAFVNPGDIVLVPDPGYPVYRIGTL--FAGGEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYPNNPTGAVAPL  183 (383)
T ss_pred             HHHHHhCCCCCEEEEeCCCCcchHHHHH--hcCCEEEEEecCcccCCccCHHHHHhhccccceEEEEeCCCCCcCccCCH
Confidence            9999999999999999999999999999  99999999998766678889999999888889999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      +++++|+++|+++|+++|+||+|.++.+.+....++..++. .+++++++||||.|+++|+|+||+++++        ++
T Consensus       184 ~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~~~--------~l  255 (383)
T TIGR03540       184 KFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGNA--------DL  255 (383)
T ss_pred             HHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEEeCCH--------HH
Confidence            99999999999999999999999998886655555555543 3568999999999999999999999865        68


Q ss_pred             HHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccc
Q 038416          247 VDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML  325 (387)
Q Consensus       247 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~  325 (387)
                      ++.+..... ...+++.+.|.++..++++. +.++++..+.++++++.+.+.|+++ ++. +..|.+|+|+|++++..  
T Consensus       256 ~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~~-~~~-~~~~~~~~~~~~~l~~~--  330 (383)
T TIGR03540       256 IAGLGKVKTNVDSGVFQAIQYAAIAALNGP-QDVVKEIRKIYQRRRDLLLEALKKI-GID-VEKPKATFYVWVPVPEG--  330 (383)
T ss_pred             HHHHHHHHHhcccCCChHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHhC-CCE-ecCCCcceEEEEECCCC--
Confidence            887776653 34456777888888888753 6778888999999999999999998 777 44778899999998642  


Q ss_pred             cCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHH
Q 038416          326 EDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKA  378 (387)
Q Consensus       326 ~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~  378 (387)
                         .+..++...+++++||.+.||..|+.  .+++||+++.+++++.+++++|++
T Consensus       331 ---~~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~  382 (383)
T TIGR03540       331 ---YTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTVPDERLEEAVARIKK  382 (383)
T ss_pred             ---CCHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEecCCHHHHHHHHHHHhh
Confidence               24677888887888999999998864  479999999888999999988864

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PTZ00377 alanine aminotransferase; Provisional

Probab=100.00  E-value=6.4e-49  Score=373.93  Aligned_cols=352  Identities=23%  Similarity=0.416  Sum_probs=285.9

Q ss_pred             cHHHHHHHHHHhcCC--CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc-CCCCeEEEc
Q 038416           27 STVAEDAVVDALRTA--HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA-RPGANILIP  103 (387)
Q Consensus        27 ~~~v~~a~~~~~~~~--~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~g~~vl~~  103 (387)
                      |..+.+++.+++...  ....|++..|..+||++|++++.+.+|..+++++|++|+|+++++..++.+++ ++||.|+++
T Consensus        90 P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~  169 (481)
T PTZ00377         90 PADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIP  169 (481)
T ss_pred             CHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEEC
Confidence            557788887766542  34579998999999999999999888888999999999999999999999998 799999999


Q ss_pred             CCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc------CceEEEEeCCCCCccccCCHHHHHHHHHHH
Q 038416          104 RPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE------NTVAIVIINPGNPCGNVFSYQHLQKIARTA  177 (387)
Q Consensus       104 ~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~~~~l~~~~  177 (387)
                      .|+|..|...++  ..|.+++.++++++++|.+|+++|++++++      +++++++++||||||.++|.+++++|+++|
T Consensus       170 ~P~y~~y~~~~~--~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a  247 (481)
T PTZ00377        170 IPQYPLYSAAIT--LLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFC  247 (481)
T ss_pred             CCCchhHHHHHH--HcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHH
Confidence            999999999999  999999999998777899999999998864      688999999999999999999999999999


Q ss_pred             HhcCcEEeecccccccccCC-CCCcccc----ccCC----CccEEEEecCccc-ccccccceEEEEeeCCCCcccchhHH
Q 038416          178 RNLGIIVIADEVYNHLAFGS-TPYVPMG----VFGS----IVPVITLGSISKR-WIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       178 ~~~~~~li~D~~~~~~~~~~-~~~~~~~----~~~~----~~~~~~i~s~sK~-~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      +++|++||+||+|..+.|++ ..+.++.    .+..    ..++++++||||. ++++|+|+||+++.+     .+++++
T Consensus       248 ~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~-----~p~~li  322 (481)
T PTZ00377        248 YEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTN-----IPPEVR  322 (481)
T ss_pred             HHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeC-----CCHHHH
Confidence            99999999999999998853 3333332    2222    1368999999997 588999999999721     012688


Q ss_pred             HHHHhhhhccCCcchHHHHHHHHHhhhcc------HHH---HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEE
Q 038416          248 DSIKGCLNAASHPVTFIQAAVPRIVDETN------EAF---FAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMV  318 (387)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~  318 (387)
                      +++.+......+++.++|.++..+++...      +.+   +.+..+.++++++.+.+.|++++++. +..|++|+|+|+
T Consensus       323 ~~l~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~-~~~p~gg~fl~~  401 (481)
T PTZ00377        323 EQIYKLASINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVS-CQPVEGAMYAFP  401 (481)
T ss_pred             HHHHHHhheecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcE-eecCCeeEEEEe
Confidence            88877654344688899999999886311      123   33444457889999999999988888 448999999998


Q ss_pred             ecCccc-c------cCCCcHHHHHHHHHHhcCeEEEcCCccCC---CCeEEEEeeCChHhHHHHHHHHHHHHHHhhhc
Q 038416          319 KLNVSM-L------EDIGDDLEFCLKLAKEESVIILPGRTVGM---KNWLRIAFAAEPATLEDGLERIKAFCQRHAKK  386 (387)
Q Consensus       319 ~~~~~~-~------~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~~~  386 (387)
                      +++.+. .      .+..++..++..+++++||.+.||..|+.   .+++||+++.+++++++++++|+++++++.+|
T Consensus       402 ~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~~~~e~l~~~l~rl~~~~~~~~~~  479 (481)
T PTZ00377        402 RIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITILPPEEQIEEMVKKIKEFHESFMKK  479 (481)
T ss_pred             eccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHh
Confidence            764210 0      00112445677888899999999999974   36899999977889999999999999887764

>PRK07682 hypothetical protein; Validated

Probab=100.00  E-value=6e-49  Score=364.96  Aligned_cols=352  Identities=22%  Similarity=0.396  Sum_probs=298.2

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCC-CEEEcCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~g~~~a~~   87 (387)
                      ..++.+.|.|    ++++++.+.+++.+.+... ...|++..|..++|+++++++.++++..++++ +|++|+|+++++.
T Consensus        21 ~~i~l~~~~~----~~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~   95 (378)
T PRK07682         21 GVISLGVGEP----DFVTPWNVREASIRSLEQG-YTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALD   95 (378)
T ss_pred             CeEEeCCCCC----CCCCCHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHH
Confidence            4567777776    6777888899998887643 45798888999999999999998888777775 7999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      .++.+++++||+|+++.|+|+.+...++  ..|.++..+++..++++.+|++++++++.++++++++++|+||||.++|.
T Consensus        96 ~~~~~l~~~gd~vl~~~p~y~~~~~~~~--~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~s~  173 (378)
T PRK07682         96 VAMRAIINPGDEVLIVEPSFVSYAPLVT--LAGGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNK  173 (378)
T ss_pred             HHHHHhCCCCCEEEEeCCCchhhHHHHH--HcCCEEEEeecCCccCCCCCHHHHHhhcCcccEEEEEECCCCCcCcCcCH
Confidence            9999999999999999999999999999  89999998887655678899999999998889999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      +++++|+++|+++++++|+||+|.++.+++. ..++..+.. .+++++++||||.|+++|+|+||+++++        ++
T Consensus       174 ~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~--------~~  244 (378)
T PRK07682        174 SELEEIAVIVEKHDLIVLSDEIYAELTYDEA-YTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPV--------YF  244 (378)
T ss_pred             HHHHHHHHHHHHcCcEEEEehhhhhcccCCC-CCChhhcccccCCEEEEecCcccccChhhhhhhhhcCH--------HH
Confidence            9999999999999999999999999988653 223333332 3679999999999999999999999976        78


Q ss_pred             HHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccc
Q 038416          247 VDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML  325 (387)
Q Consensus       247 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~  325 (387)
                      ++.+..... ...+++.+.|.++..+|++. +.++.+..+.++++++.+.+.|+++ ++. +..|.+++|+|+.++... 
T Consensus       245 i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~~-~~~-~~~p~g~~~~~~~~~~~~-  320 (378)
T PRK07682        245 SEAMLKIHQYSMMCAPTMAQFAALEALRAG-NDDVIRMRDSYRKRRNFFVTSFNEI-GLT-CHVPGGAFYAFPSISSTG-  320 (378)
T ss_pred             HHHHHHHHHhhccCCCHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHC-CCc-cCCCCeeEEEEEeccCCC-
Confidence            888876654 33567788999999998753 3557888899999999999999998 777 447889999998875311 


Q ss_pred             cCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHHHh
Q 038416          326 EDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       326 ~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~  383 (387)
                         .++.++...+++++||.+.||..|+.  ++++||+++.+.+++++++++|+++++++
T Consensus       321 ---~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~l~~~  377 (378)
T PRK07682        321 ---LSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYATSLEQLQEAMKRMKRFVENK  377 (378)
T ss_pred             ---CCHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHHHhhc
Confidence               14667888887788999999998865  58999999888999999999999998764

>PRK09148 aminotransferase; Validated

Probab=100.00  E-value=1.7e-48  Score=363.87  Aligned_cols=357  Identities=21%  Similarity=0.337  Sum_probs=296.2

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCC-CEEEcCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~g~~~a~~   87 (387)
                      .+++.+.|.|    ++++++.+.+++.+.+.......|++..|..+||+++++++++++|..++++ +|++|+|+++++.
T Consensus        31 ~~i~l~~~~p----~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~  106 (405)
T PRK09148         31 DIIDLGMGNP----DLPTPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFA  106 (405)
T ss_pred             CeEEcCCCCC----CCCCCHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHH
Confidence            3466777766    6788899999998887654456899988999999999999988778778887 8999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      .++.+++++||+|+++.|+|+.+...+.  ..|.++..+++..++++..++++..+...++++++++++|+||||.++|.
T Consensus       107 ~~~~~l~~~gd~Vl~~~P~y~~~~~~~~--~~g~~v~~v~~~~~~~~~~~l~~~~~~~~~~~~~v~l~~P~NPtG~~~s~  184 (405)
T PRK09148        107 NMAQAITAPGDVILCPNPSYPIHAFGFI--MAGGVIRSVPAEPDEEFFPALERAVRHSIPKPIALIVNYPSNPTAYVADL  184 (405)
T ss_pred             HHHHHhcCCCCEEEEcCCCCcccHHHHH--hcCCEEEEEeCCCCCCCccCHHHHHhhccccceEEEEeCCCCCCCcCCCH
Confidence            9999999999999999999999998889  89999999998655544444554444444678999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      +++++|+++|++++++||+||+|..+.+++....++..+.. .+++++++||||.|+++|+|+||+++++        ++
T Consensus       185 ~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~~~--------~~  256 (405)
T PRK09148        185 DFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVGNE--------RL  256 (405)
T ss_pred             HHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchheeeeeCCH--------HH
Confidence            99999999999999999999999998887654444444432 3467889999999999999999999865        78


Q ss_pred             HHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccc
Q 038416          247 VDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML  325 (387)
Q Consensus       247 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~  325 (387)
                      ++.+.+... ...+++.+.|.++..+|.. .+.++++..+.++++++.+.+.|+++ ++. +..|.+|+|+|++++....
T Consensus       257 i~~l~~~~~~~~~~~~~~~q~~~~~~L~~-~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~-~~~p~~g~f~~~~l~~~~~  333 (405)
T PRK09148        257 IAALTRVKSYLDYGAFTPIQVAATAALNG-PQDCIAEMRELYKKRRDVLVESFGRA-GWD-IPPPAASMFAWAPIPEAFR  333 (405)
T ss_pred             HHHHHHHHHHhccCCChHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHc-CCc-cCCCCeeEEEEEECCCccC
Confidence            888877654 3456778899999988874 35778888999999999999999987 676 4478999999999874210


Q ss_pred             cCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          326 EDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       326 ~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                       . .+..++...++++.||.+.||..|+.  .+++||+++.+++++.+++++|.+++.++.
T Consensus       334 -~-~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~~~~~~l~~al~~l~~~l~~~~  392 (405)
T PRK09148        334 -H-LGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALVENEQRIRQAARNIKRFLSSAD  392 (405)
T ss_pred             -C-CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHHHH
Confidence             0 13467778887788999999998865  479999999889999999999999997764

>PRK05942 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.2e-48  Score=364.46  Aligned_cols=352  Identities=20%  Similarity=0.340  Sum_probs=294.7

Q ss_pred             cccccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCC-CEEEcCChH
Q 038416            5 KGQETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCS   83 (387)
Q Consensus         5 ~g~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~g~~   83 (387)
                      .|++ +++++.|+|    +++.|+.+.+++.+.+.......|++..|.++||+++++|+.++++..++++ .|++|+|++
T Consensus        33 ~g~~-~i~l~~g~p----~~~~p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~  107 (394)
T PRK05942         33 QGLD-LIDLGMGNP----DGAAPQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSK  107 (394)
T ss_pred             cCCC-eEEcCCCCC----CCCCCHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChH
Confidence            3444 567777776    5666777888777776544456899889999999999999988777778887 489999999


Q ss_pred             HHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccc
Q 038416           84 QAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGN  163 (387)
Q Consensus        84 ~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~  163 (387)
                      +++..++.+++++||+|+++.|+|+.+...+.  ..|.++..++++.+++|.+|++++++.++++++++++++|+||||.
T Consensus       108 ~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPtG~  185 (394)
T PRK05942        108 EGLTHLALAYVNPGDVVLVPSPAYPAHFRGPL--IAGAQIYPIILKPENDWLIDLSSIPEEVAQQAKILYFNYPSNPTTA  185 (394)
T ss_pred             HHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH--HcCCEEEEeecCCccCCccCHHHHHHhccccceEEEEcCCCCCCCC
Confidence            99999999999999999999999999988888  8999999999876667889999999999889999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEeeCCCCccc
Q 038416          164 VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQ  242 (387)
Q Consensus       164 ~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~  242 (387)
                      +++.+++++|+++|+++|+++|+||+|..+.+++....++..+.. .+.+++++||||.|+++|+|+||+++++      
T Consensus       186 ~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~~~------  259 (394)
T PRK05942        186 TAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGNR------  259 (394)
T ss_pred             cCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeeeecCH------
Confidence            999999999999999999999999999998886654455544432 3457889999999999999999999865      


Q ss_pred             chhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecC
Q 038416          243 NSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLN  321 (387)
Q Consensus       243 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~  321 (387)
                        ++++.++.... ...+.+.+.|.++..+++. .+.++++..+.++++++.+.+.|+.+ ++. +..|.+|+|+|++++
T Consensus       260 --~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~-~~~~~~~~f~~~~~~  334 (394)
T PRK05942        260 --HIIQGLRTLKTNLDYGIFSALQKAAETALQL-PDSYLQQVQERYRTRRDFLIQGLGEL-GWN-IPPTKATMYLWVPCP  334 (394)
T ss_pred             --HHHHHHHHHHhhcccCCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHC-CCe-ecCCCeeeEEEEECC
Confidence              78888887653 3456777889998888864 35678888899999999999999887 676 447888999999987


Q ss_pred             cccccCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHH
Q 038416          322 VSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAF  379 (387)
Q Consensus       322 ~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~  379 (387)
                      ..     .++.++..++++++||.+.||..|+.  .+++||+++.+.+.+.+++++|.++
T Consensus       335 ~~-----~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~  389 (394)
T PRK05942        335 VG-----MGSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIADCDRLGEALDRLKQA  389 (394)
T ss_pred             CC-----CCHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHHHHHh
Confidence            42     14567777788889999999998864  5799999987788899998888664

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=100.00  E-value=1.1e-48  Score=365.18  Aligned_cols=345  Identities=25%  Similarity=0.371  Sum_probs=291.1

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCC-CCCC-CEEEcCChHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYK-LSPE-DVYLTLGCSQAI   86 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~-~~~~-~i~~~~g~~~a~   86 (387)
                      .+++.+.|.|    ++++++.+.+++.+.+..  ...|++..|..+||+++++|+.+.++.. ++++ +|++|+|+++++
T Consensus        30 ~~i~l~~~~p----~~~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al  103 (396)
T PRK09147         30 PPISLSIGEP----KHPTPAFIKDALAANLDG--LASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREAL  103 (396)
T ss_pred             CeEecCCCCC----CCCCCHHHHHHHHHHhhh--hcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHH
Confidence            4567778776    788899999999887652  4689988899999999999998888877 7875 899999999999


Q ss_pred             HHHHHhhcCC---CCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccc
Q 038416           87 EISLSVLARP---GANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGN  163 (387)
Q Consensus        87 ~~~~~~l~~~---g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~  163 (387)
                      ..++++++++   ||.|+++.|+|..+...+.  ..|.+++.+|++++++|.+|++++++.+.++++++++++||||||.
T Consensus       104 ~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~--~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~  181 (396)
T PRK09147        104 FAFAQTVIDRDGPGPLVVCPNPFYQIYEGAAL--LAGAEPYFLNCDPANNFAPDFDAVPAEVWARTQLLFVCSPGNPTGA  181 (396)
T ss_pred             HHHHHHHcCCCCCCCEEEEcCCCccchHHHHH--hcCCEEEEeccCccccCccCHHHHHHHHhhccEEEEEcCCCCCcCc
Confidence            9999999999   8999999999999999999  9999999999977778899999999888778999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCcEEeecccccccccCCC-CCcc-cc---ccC--CCccEEEEecCcccccccccceEEEEeeC
Q 038416          164 VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGST-PYVP-MG---VFG--SIVPVITLGSISKRWIVPGWRLGWLVTSD  236 (387)
Q Consensus       164 ~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~-~~~~-~~---~~~--~~~~~~~i~s~sK~~~~~g~r~G~i~~~~  236 (387)
                      ++|.+++++|+++|++|+++||+||+|..+.+++. ...+ +.   .+.  ..+++++++||||.|+++|+|+||+++++
T Consensus       182 ~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~~~  261 (396)
T PRK09147        182 VLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGDA  261 (396)
T ss_pred             cCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCccceeeeecCCH
Confidence            99999999999999999999999999999887653 1111 11   111  23689999999999999999999999875


Q ss_pred             CCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEE
Q 038416          237 PNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMF  315 (387)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~  315 (387)
                              ++++.+.+... ...+++.+.|.++...+..  +.++.+..+.++++++.+.+.|++.  +. +..|.+|+|
T Consensus       262 --------~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~~~--~~-~~~p~~g~f  328 (396)
T PRK09147        262 --------ALLKKFLLYRTYHGCAMPPAVQAASIAAWND--EAHVRENRALYREKFDAVTPILAPV--LD-VQLPDAGFY  328 (396)
T ss_pred             --------HHHHHHHHHhhhcccCCCHHHHHHHHHHhcc--hhHHHHHHHHHHHHHHHHHHHHHHh--cC-CCCCCeeEE
Confidence                    68888876654 3456777888887766643  5678888899999999999998874  44 347899999


Q ss_pred             EEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC--------CCeEEEEeeCChHhHHHHHHHHHHHHH
Q 038416          316 VMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--------KNWLRIAFAAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--------~~~~Ri~~~~~~e~~~~~~~~l~~~~~  381 (387)
                      +|++++.       ++.+++..+++++||.+.||..|+.        .+++||+++.+++++.+++++|++++.
T Consensus       329 ~~~~~~~-------~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~~~~~l~~~l~rl~~~~~  395 (396)
T PRK09147        329 LWAKVPG-------DDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVAPLAECVEAAERIVDFCR  395 (396)
T ss_pred             EEEECCC-------CHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecCCHHHHHHHHHHHHHHhc
Confidence            9999872       4567888888888999999988752        478999999889999999999988764

>PRK07337 aminotransferase; Validated

Probab=100.00  E-value=1.4e-48  Score=363.62  Aligned_cols=355  Identities=24%  Similarity=0.414  Sum_probs=297.3

Q ss_pred             cccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHH
Q 038416            7 QETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI   86 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~   86 (387)
                      ++..++++.|.|    ++++++.+.+++.+.+... ...|++..|..+||+.+++|+++.++..+++++|++|+|+++++
T Consensus        29 ~~~~i~l~~~~~----~~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al  103 (388)
T PRK07337         29 GRDIIHMGIGEP----DFTAPEPVVEAAARALRRG-VTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAAL  103 (388)
T ss_pred             CCCEEEeCCcCC----CCCCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHH
Confidence            344567777766    6778899999999888643 45788888999999999999998888888999999999999999


Q ss_pred             HHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCC
Q 038416           87 EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFS  166 (387)
Q Consensus        87 ~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  166 (387)
                      ..++.+++++||+|+++.|+|..+...+.  ..|.+++.++++.++++.+|++++++.++++++++++++|+||||.+++
T Consensus       104 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~  181 (388)
T PRK07337        104 LLACLALVERGDEVLMPDPSYPCNRHFVA--AAEGRPVLVPSGPAERFQLTAADVEAAWGERTRGVLLASPSNPTGTSIA  181 (388)
T ss_pred             HHHHHHhcCCCCEEEEeCCCchhhHHHHH--HcCCEEEEeecCCccCCcCCHHHHHhhcCccceEEEEECCCCCCCcCcC
Confidence            99999999999999999999999998888  8999999999876667899999999999889999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          167 YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       167 ~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      .+++++|+++|+++++++|+||+|..+.+.+. ..+...+  .+++++++|+||.|+++|+|+||+++++        ++
T Consensus       182 ~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~--~~~vi~~~S~SK~~~~~G~RiG~~~~~~--------~l  250 (388)
T PRK07337        182 PDELRRIVEAVRARGGFTIVDEIYQGLSYDAA-PVSALSL--GDDVITINSFSKYFNMTGWRLGWLVVPE--------AL  250 (388)
T ss_pred             HHHHHHHHHHHHHCCCEEEEeccccccccCCC-CcChhhc--cCCEEEEEechhhcCCchhheeeeecCH--------HH
Confidence            99999999999999999999999998877654 2222222  3568999999999999999999999875        67


Q ss_pred             HHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccc
Q 038416          247 VDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML  325 (387)
Q Consensus       247 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~  325 (387)
                      ++.+..... ...+.+.+.|.++..++......++.+..+.++++++.+.+.|+++ ++.....|++|+|+|++++....
T Consensus       251 ~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~-~~~~~~~p~~g~f~~~~~~~~~~  329 (388)
T PRK07337        251 VGTFEKLAQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESL-GFKVPVMPDGAFYVYADCRGVAH  329 (388)
T ss_pred             HHHHHHHHHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhc-CCccccCCCeeEEEEEecccccC
Confidence            888876653 3456788889988888865434556777888999999999999987 55533368899999999874221


Q ss_pred             cCCCcHHHHHHHHHHhcCeEEEcCCccCC---CCeEEEEeeCChHhHHHHHHHHHHHH
Q 038416          326 EDIGDDLEFCLKLAKEESVIILPGRTVGM---KNWLRIAFAAEPATLEDGLERIKAFC  380 (387)
Q Consensus       326 ~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---~~~~Ri~~~~~~e~~~~~~~~l~~~~  380 (387)
                      ++..++.+++..+++++||.+.||..|+.   .+++||+++.+++++.+++++|.+++
T Consensus       330 ~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~~~~~l~~~l~rl~~~l  387 (388)
T PRK07337        330 PAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYATSMSRLEEAVARLGKLF  387 (388)
T ss_pred             CCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecCCHHHHHHHHHHHHHHh
Confidence            22225667888888889999999998865   47999999888999999999998765

>PRK07324 transaminase; Validated

Probab=100.00  E-value=1.6e-48  Score=360.25  Aligned_cols=345  Identities=24%  Similarity=0.396  Sum_probs=295.3

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      ..+++.+.|.|    ++++|+.+ +++.+++..... .|++..|.++||+.+++++.     .+++++|++|+|+++++.
T Consensus        26 ~~~~~~~~~e~----~~~~~~~~-~~~~~~~~~~~~-~Y~~~~G~~~lr~~ia~~~~-----~~~~~~vi~t~G~~~al~   94 (373)
T PRK07324         26 SCIDSLTLEEL----LALAGKNP-EAFYQELGQKKL-TYGWIEGSPEFKEAVASLYQ-----NVKPENILQTNGATGANF   94 (373)
T ss_pred             CCCCCCcHHHH----HhccCcch-HHHHHHHhcCCc-cCCCCCCCHHHHHHHHHHhc-----CCChhhEEEcCChHHHHH
Confidence            34566778877    78888888 888887776544 89988899999999999984     357899999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      .++.+++++||+|+++.|+|..+...++  ..|.+++.+++..++++.+|+++++++++++++++++++|+||||.+++.
T Consensus        95 ~~~~~l~~~gd~Vl~~~P~y~~~~~~~~--~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~~p~NPtG~~~~~  172 (373)
T PRK07324         95 LVLYALVEPGDHVISVYPTYQQLYDIPE--SLGAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDR  172 (373)
T ss_pred             HHHHHhCCCCCEEEEcCCCchhHHHHHH--HcCCEEEEEecccccCCCCCHHHHHHhCCCCCcEEEEeCCCCCCCCCCCH
Confidence            9999999999999999999999999999  99999999999877778899999999998899999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      +++++|+++|+++|+++|+|++|.++.+++. ..++...  .+++++++|+||.|+++|+|+||+++++        +++
T Consensus       173 ~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~-~~s~~~~--~~~~I~~~s~SK~~~~~G~RiG~i~~~~--------~li  241 (373)
T PRK07324        173 AYLEEIVEIARSVDAYVLSDEVYRPLDEDGS-TPSIADL--YEKGISTNSMSKTYSLPGIRVGWIAANE--------EVI  241 (373)
T ss_pred             HHHHHHHHHHHHCCCEEEEEccccccccCCC-CCChhhc--cCCEEEEecchhhcCCccceeEEEecCH--------HHH
Confidence            9999999999999999999999999887643 2333322  3467999999999999999999999865        788


Q ss_pred             HHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccccc
Q 038416          248 DSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE  326 (387)
Q Consensus       248 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~  326 (387)
                      +.+.+.+. .+.+++.+.|.++..+++. .+..+++..+.++++++.+.+.|++.+++. +..|.+|+++|+.++..   
T Consensus       242 ~~~~~~~~~~~~~~~~~~q~~a~~~l~~-~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~-~~~p~gg~~~~i~~~~~---  316 (373)
T PRK07324        242 DILRKYRDYTMICAGVFDDMLASLALEH-RDAILERNRKIVRTNLAILDEWVAKEPRVS-YVKPKAVSTSFVKLDVD---  316 (373)
T ss_pred             HHHHHHhCcEEecCChHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHhcCCCce-EECCCceEEEEEEeCCC---
Confidence            88887764 3456677888888887763 456778888888999999999998877777 44888898888888642   


Q ss_pred             CCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHHh
Q 038416          327 DIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       327 ~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~  383 (387)
                        .++.+++.++++++||.+.||..|+.++++||+++.+++.+.+++++|+++++++
T Consensus       317 --~~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis~~~~~~~l~~~l~rl~~~l~~~  371 (373)
T PRK07324        317 --MPSEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYCCDTETLKKGLKKLSEFLREF  371 (373)
T ss_pred             --CCHHHHHHHHHHhcCEEEECccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence              2567888988888999999999998889999999988999999999999998764

>PRK06108 aspartate aminotransferase; Provisional

Probab=100.00  E-value=6.5e-48  Score=359.13  Aligned_cols=352  Identities=27%  Similarity=0.458  Sum_probs=299.4

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      +..++++.|.|    ++++++.+.+++.+.+.+.. ..|++..|.++||+++++++.+.++..+++++|++|+|+++++.
T Consensus        24 ~~~i~l~~g~~----~~~~~~~~~~~~~~~~~~~~-~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~   98 (382)
T PRK06108         24 EGVLPLWFGES----DLPTPDFIRDAAAAALADGE-TFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALM   98 (382)
T ss_pred             CCeEEecCCCC----CCCCCHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHH
Confidence            34567778777    78889999999999887643 46998889999999999999988887788999999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCC-CCccCChhhHHHhhccCceEEEEeCCCCCccccCC
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPE-KRWEVDLDGVEALADENTVAIVIINPGNPCGNVFS  166 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  166 (387)
                      .++.+++++||+|+++.|+|..+...+.  ..|.+++.++++.+ .+|.+|++++++.++++++++++++|+||||..+|
T Consensus        99 ~~~~~l~~~gd~vl~~~p~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~p~NPtG~~~~  176 (382)
T PRK06108         99 LAAQALVGPGDEVVAVTPLWPNLVAAPK--ILGARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNPTGWTAS  176 (382)
T ss_pred             HHHHHhcCCCCEEEEeCCCccchHHHHH--HCCCEEEEeeCCCCCCCccCCHHHHHHhcCccceEEEEECCCCCCCcccC
Confidence            9999999999999999999999999999  99999999998653 45779999999999888999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcEEeecccccccccC-CCCCccccccC-CCccEEEEecCcccccccccceEEEEeeCCCCcccch
Q 038416          167 YQHLQKIARTARNLGIIVIADEVYNHLAFG-STPYVPMGVFG-SIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNS  244 (387)
Q Consensus       167 ~~~~~~l~~~~~~~~~~li~D~~~~~~~~~-~~~~~~~~~~~-~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~  244 (387)
                      .+++++|+++|+++|+++|+||+|+++.++ +....++..+. ..+++++++|+||.|+++|+|+||+++++        
T Consensus       177 ~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~--------  248 (382)
T PRK06108        177 RDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPP--------  248 (382)
T ss_pred             HHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeCCH--------
Confidence            999999999999999999999999998876 22222322332 24679999999999999999999999975        


Q ss_pred             hHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcc
Q 038416          245 GFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVS  323 (387)
Q Consensus       245 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~  323 (387)
                      ++++.+..... ...+++.+.|.++..++.+. +.++++..++++++++.+.+.|++++++. +..|.+|+|+|++++..
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~p~~g~~~~~~l~~~  326 (382)
T PRK06108        249 ALGQVLEKLIEYNTSCVAQFVQRAAVAALDEG-EDFVAELVARLRRSRDHLVDALRALPGVE-VAKPDGAMYAFFRIPGV  326 (382)
T ss_pred             HHHHHHHHHHHhcccCCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHhCCCCc-ccCCCeeEEEEEeCCCC
Confidence            68888776643 34567888899988888753 56778888999999999999999887888 44788999999988642


Q ss_pred             cccCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHH
Q 038416          324 MLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       324 ~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~  381 (387)
                           .+..+++..+++++||.+.||..|+.  .+++|++++.+++++++++++|+++++
T Consensus       327 -----~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~l~  381 (382)
T PRK06108        327 -----TDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFARDPARLDEAVERLRRFLA  381 (382)
T ss_pred             -----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence                 24567888888888999999988854  579999998899999999999998775

>PRK08361 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3.4e-48  Score=361.21  Aligned_cols=353  Identities=23%  Similarity=0.409  Sum_probs=300.5

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      ..++.+.|.|    ++++++.+.+++++++... ...|.+..|..+||+++++++.+.++..+++++|++|+|+++++..
T Consensus        34 ~~i~l~~~~~----~~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~  108 (391)
T PRK08361         34 NVISLGIGEP----DFDTPKNIKEAAKRALDEG-WTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYL  108 (391)
T ss_pred             CeEEcCCCCC----CCCCCHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHH
Confidence            3566777766    7778899999999987654 3468777899999999999998877878889999999999999999


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      ++.+++++||+|++++|+|.++...+.  ..|.+++.++++.++++.+|++++++.++++++++++++|+||||.++|.+
T Consensus       109 ~~~~l~~~g~~Vlv~~p~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~i~~p~NPtG~~~~~~  186 (391)
T PRK08361        109 AFESLLEEGDEVIIPDPAFVCYVEDAK--IAEAKPIRIPLREENEFQPDPDELLELITKRTRMIVINYPNNPTGATLDKE  186 (391)
T ss_pred             HHHHhcCCCCEEEEcCCCCcccHHHHH--HcCCEEEEEecCCccCCCCCHHHHHHhcccccEEEEEeCCCCCCCcCcCHH
Confidence            999999999999999999999999999  899999999987766788999999999988999999999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD  248 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~  248 (387)
                      ++++|+++|+++++++|+||+|+.+.+++....++..+.. +++++++|+||.|+++|+|+||+++++        ++++
T Consensus       187 ~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~i~~~s~SK~~~~~GlRiG~~~~~~--------~~~~  257 (391)
T PRK08361        187 VAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAP-DNTILANSFSKTFAMTGWRLGFVIAPE--------QVIK  257 (391)
T ss_pred             HHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCC-CCEEEEecCchhcCCcHhhhhhhccCH--------HHHH
Confidence            9999999999999999999999998876544444444332 578999999999999999999999975        6777


Q ss_pred             HHHhhhh-ccCCcchHHHHHHHHHhhhcc-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccccc
Q 038416          249 SIKGCLN-AASHPVTFIQAAVPRIVDETN-EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE  326 (387)
Q Consensus       249 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~  326 (387)
                      .+..... ...+.+.+.|.++..++++.. +.++++..+.++++++.+.+.|+.++++. +..|.+|+|+|++++...  
T Consensus       258 ~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~p~g~~~~~~~l~~~~--  334 (391)
T PRK08361        258 DMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIK-VFEPKGAFYVFANIDETG--  334 (391)
T ss_pred             HHHHHHhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCe-ecCCCEEEEEEEECCCCC--
Confidence            7766543 345677888999888887643 35688888999999999999999987777 557888999999886321  


Q ss_pred             CCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHHH
Q 038416          327 DIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       327 ~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~~  382 (387)
                        .++.++...+++++||.+.||..|+.  .+++||+++.+++++++++++|++++++
T Consensus       335 --~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~l~~  390 (391)
T PRK08361        335 --MSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYATSKEKLIEAMERMEKALEE  390 (391)
T ss_pred             --CCHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence              14667888777778999999998865  4799999998889999999999998865

>PRK06290 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.1e-47  Score=357.56  Aligned_cols=354  Identities=21%  Similarity=0.303  Sum_probs=293.8

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCC-CCCC-CEEEcCChHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYK-LSPE-DVYLTLGCSQAI   86 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~-~~~~-~i~~~~g~~~a~   86 (387)
                      .+++.+.|.|    ++++++.+.+++.+.+.......|++ .|..+||+++++|+.+.++.. ++++ +|++|+|+++++
T Consensus        45 ~~i~L~~g~p----~~~~~~~~~~~l~~~~~~~~~~~Y~~-~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al  119 (410)
T PRK06290         45 ELIDMGVGEP----DEMADESVVEVLCEEAKKPENRGYAD-NGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPAL  119 (410)
T ss_pred             CeEEcCCCCC----CCCCCHHHHHHHHHHHhCCCCCCCCC-CCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHH
Confidence            3567778776    77889999999988775443456875 899999999999998887876 8886 799999999999


Q ss_pred             HHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCC
Q 038416           87 EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFS  166 (387)
Q Consensus        87 ~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  166 (387)
                      ..++.+++++||.|+++.|+|..+...++  ..|.++..++++.++++.+|++++++++.+++++|++++||||||.+++
T Consensus       120 ~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~--~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~v~s  197 (410)
T PRK06290        120 AMLPSCFINPGDVTLMTVPGYPVTGTHTK--YYGGEVYNLPLLEENNFLPDLDSIPKDIKEKAKLLYLNYPNNPTGAVAT  197 (410)
T ss_pred             HHHHHHhCCCCCEEEEeCCCCccHHHHHH--HcCCEEEEEecCCCcCCcCCHHHHHHhhcccceEEEEECCCCCCCcCCC
Confidence            99999999999999999999999999999  9999999999987667888999999988888999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEeeCCCCcccchh
Q 038416          167 YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSG  245 (387)
Q Consensus       167 ~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~  245 (387)
                      .+++++|+++|++++++||+||+|..+.+++. ..++..+.. .+++++++||||.|+++|+|+||+++++        +
T Consensus       198 ~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~-~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii~~~--------~  268 (410)
T PRK06290        198 KEFYEEVVDFAKENNIIVVQDAAYAALTFDGK-PLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVGNE--------L  268 (410)
T ss_pred             HHHHHHHHHHHHHcCeEEEEecchhhceeCCC-CcChhcCCCccccEEEEeechhhcCCchhheEeEEeCH--------H
Confidence            99999999999999999999999999887653 223333332 3567999999999999999999999865        6


Q ss_pred             HHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccc
Q 038416          246 FVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSM  324 (387)
Q Consensus       246 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~  324 (387)
                      +++.+..... ...+.+.+.|.++..++++  ..++++..+.++++++.+.+.|+++ ++. +..|++++++|++++...
T Consensus       269 l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~p~g~f~l~v~lp~~~  344 (410)
T PRK06290        269 IVKAFATVKDNNDSGQFIAIQKAGIYALDH--PEITEKIREKYSRRLDKLVKILNEV-GFK-AEMPGGTFYLYVKAPKGT  344 (410)
T ss_pred             HHHHHHHHHhccccCCcHHHHHHHHHHhhC--cHHHHHHHHHHHHHHHHHHHHHHhC-CCe-ecCCCeeeEEEEECCCcc
Confidence            8888876654 3345556788888888875  3567888899999999999999988 677 447889999999987532


Q ss_pred             ccC--CCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee---CChHhHHHHHHHHHHHHHHhh
Q 038416          325 LED--IGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA---AEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       325 ~~~--~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~---~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      ..+  ..+..++.+.|+++.++.+.||..|+  +++||+++   .++++.++.++.|.+.|.++.
T Consensus       345 ~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~--~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~~  407 (410)
T PRK06290        345 KSGIKFENAEEFSQYLIKEKLISTVPWDDAG--HFLRFSVTFEAKDEEEEDRILEEIKRRLSDVE  407 (410)
T ss_pred             ccCCCCCCHHHHHHHHHHhCCEEEECCcccc--CeEEEEEEcccccccchhHHHHHHHHHHhhcc
Confidence            111  02466888888888788888987653  79999997   367889999999988887653

>PRK05957 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.7e-47  Score=355.77  Aligned_cols=353  Identities=22%  Similarity=0.337  Sum_probs=297.1

Q ss_pred             ccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCC-CCCEEEcCChHHHHHH
Q 038416           10 RHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLS-PEDVYLTLGCSQAIEI   88 (387)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~-~~~i~~~~g~~~a~~~   88 (387)
                      ..+++.|.+    ++++++.+.+++.+.+.......|++..|..++|+.+++++.+.+|..++ +++|++|+|+++++..
T Consensus        29 ~~~l~~g~~----~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~  104 (389)
T PRK05957         29 TISLGQGVV----SYPPPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMN  104 (389)
T ss_pred             eEEccCCCC----CCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHH
Confidence            355556655    68899999999999876554567988899999999999999988887766 6789999999999999


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      ++.+++++||+|+++.|+|..+...++  ..|.+++.++.+  .++.+|+++++++++++++++++++|+||||..+|.+
T Consensus       105 ~~~~~~~~gd~Vlv~~P~y~~~~~~~~--~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~klv~~~~p~NPtG~~~~~~  180 (389)
T PRK05957        105 AILAITDPGDEIILNTPYYFNHEMAIT--MAGCQPILVPTD--DNYQLQPEAIEQAITPKTRAIVTISPNNPTGVVYPEA  180 (389)
T ss_pred             HHHHhcCCCCEEEEeCCCCcCHHHHHH--hcCCEEEEeecC--CCCCcCHHHHHHhcCcCceEEEEeCCCCCCCcCcCHH
Confidence            999999999999999999999888888  899999999873  4568999999999988899999999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCcccccc-CCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF-GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      ++++|+++|+++|+++|+||+|.++.+++....+...+ +...+++++.||||.|+++|+|+||+++++        +++
T Consensus       181 ~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~--------~~~  252 (389)
T PRK05957        181 LLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIPI--------HLL  252 (389)
T ss_pred             HHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeEEEecCH--------HHH
Confidence            99999999999999999999999988765433333232 344579999999999999999999999875        788


Q ss_pred             HHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccccc
Q 038416          248 DSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE  326 (387)
Q Consensus       248 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~  326 (387)
                      +++..... ...+++.+.|.++..+|++ ...++++..+.++++++.+.+.|++++++..+..|.+|+|+|++++..   
T Consensus       253 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~gg~~~~~~~~~~---  328 (389)
T PRK05957        253 EAIKKIQDTILICPPVVSQYAALGALQV-GKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYCFLKVNTD---  328 (389)
T ss_pred             HHHHHHHhhcccCCCcHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCeeEEEEEeCCCC---
Confidence            88887654 3456677899998888874 346678888889999999999999887652255788899999998642   


Q ss_pred             CCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEee-CChHhHHHHHHHHHHHHHHhh
Q 038416          327 DIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFA-AEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       327 ~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~-~~~e~~~~~~~~l~~~~~~~~  384 (387)
                        .++.+++..+++++||.+.||..|+.  ++++||+++ .+++++++++++|.+.++++.
T Consensus       329 --~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~l~~~~~~l~~~~~~~~  387 (389)
T PRK05957        329 --LNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERLVQGLKTIV  387 (389)
T ss_pred             --CChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHHhhh
Confidence              25678888888888999999998865  469999996 578999999999999988764

>PRK05764 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.1e-47  Score=358.64  Aligned_cols=359  Identities=26%  Similarity=0.443  Sum_probs=304.8

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      ...++.+.|+|    ++++++.+.+++.+.+... ...|++..|..+||+.+++++.+.++..+++++|++|+|+++++.
T Consensus        31 ~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~  105 (393)
T PRK05764         31 RDVISLGAGEP----DFDTPEHIKEAAIEALDDG-KTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALY  105 (393)
T ss_pred             CCEEEeCCCCC----CCCCCHHHHHHHHHHHhcC-CCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHH
Confidence            34567778777    7788899999999988754 346888889999999999999888777788899999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      .++.+++++||+|+++.|+|..+...++  ..|.++..+++++++++.+|++.+++.++++++++++++|+||||.++|.
T Consensus       106 ~~~~~~~~~gd~vl~~~p~y~~~~~~~~--~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~  183 (393)
T PRK05764        106 NAFMALLDPGDEVIIPAPYWVSYPEMVK--LAGGVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNSPSNPTGAVYSP  183 (393)
T ss_pred             HHHHHhcCCCCEEEecCCCCcchHHHHH--HcCCEEEEEecCcccCCcCCHHHHHHhhCccceEEEEECCCCCCCcccCH
Confidence            9999999999999999999999999999  99999999998766678899999999998889999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCcccccc--CCCccEEEEecCcccccccccceEEEEeeCCCCcccchh
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF--GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSG  245 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~  245 (387)
                      +++++|+++|++||+++|+|++|..+.+++....++..+  +..+++++++|+||.++++|+|+||+++++        +
T Consensus       184 ~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~~~~--------~  255 (393)
T PRK05764        184 EELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAAGPK--------E  255 (393)
T ss_pred             HHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeEEEecCH--------H
Confidence            999999999999999999999999988765444444443  223578999999999999999999999865        7


Q ss_pred             HHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccc
Q 038416          246 FVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSM  324 (387)
Q Consensus       246 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~  324 (387)
                      +++++..... ....++++.|.++..+++. .+.++++..+.+.++++.+.+.|++++++. +..|.+++++|++++...
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~g~~~~~~~~~~~~  333 (393)
T PRK05764        256 LIKAMSKLQSHSTSNPTSIAQYAAVAALNG-PQDEVEEMRQAFEERRDLMVDGLNEIPGLE-CPKPEGAFYVFPNVSKLL  333 (393)
T ss_pred             HHHHHHHHHhhcccCCChHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhhCCCCc-ccCCCcceEEEEeccccc
Confidence            8888876653 4557788899998888873 457788888999999999999999987888 447888999999886521


Q ss_pred             ccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHHh
Q 038416          325 LEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       325 ~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      .+...++.++...+++++||.+.||..|+..+++||+++.+++++++++++|.++++++
T Consensus       334 ~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis~~~~~~~~~~~i~~l~~~~~~~  392 (393)
T PRK05764        334 GKSITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLSYATSLEDLEEGLERIERFLESL  392 (393)
T ss_pred             ccccCCHHHHHHHHHHhCCEEEccccccCCCCEEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence            11001246777888788899999999888789999999889999999999999998865

>PRK09265 aminotransferase AlaT; Validated

Probab=100.00  E-value=3.6e-47  Score=355.61  Aligned_cols=368  Identities=27%  Similarity=0.426  Sum_probs=293.1

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      ...++++.|+|..+ ++++++.+.+++.+....  ...|++..|..+||+++++++......++++++|++|+|+++++.
T Consensus        33 ~~~i~l~~g~p~~~-~~~~~~~i~~~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~  109 (404)
T PRK09265         33 HKILKLNIGNPAPF-GFEAPDEILRDVIRNLPT--AQGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIV  109 (404)
T ss_pred             CCeEEecCCCCCcC-CCCCCHHHHHHHHHHhhc--CCCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHH
Confidence            34566678888543 577889999998887653  457999899999999999999765444788999999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      .++.+++++||+|+++.|+|..+...+.  ..|.+++.++++.++++.+|+++++++++++++++++++|+||||..++.
T Consensus       110 ~~~~~~~~~gd~Vlv~~p~y~~~~~~~~--~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~~~  187 (404)
T PRK09265        110 MAMQALLNNGDEVLVPAPDYPLWTAAVS--LSGGKPVHYLCDEEAGWFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSK  187 (404)
T ss_pred             HHHHHhCCCCCEEEEeCCCCcChHHHHH--HcCCEEEEEecccccCCCCCHHHHHHhccccceEEEEECCCCCCCcCCCH
Confidence            9999999999999999999999999998  88999888887655567899999999998889999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      +++++|+++|+++|+++|+||+|.++.+++....++..+..+.++++++||||.|+++|+|+||++++.+....  +.++
T Consensus       188 ~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~--~~~~  265 (404)
T PRK09265        188 ELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWMVLSGPKKHA--KGYI  265 (404)
T ss_pred             HHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhccCcccceEEEEEeCchHHH--HHHH
Confidence            99999999999999999999999998887655555555555557899999999999999999999975321100  0233


Q ss_pred             HHHHhhhhccCCcchHHHHHHHHHhhhccH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccccc
Q 038416          248 DSIKGCLNAASHPVTFIQAAVPRIVDETNE-AFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE  326 (387)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~  326 (387)
                      +.+........+++.++|.++..+|..... ..+.+..+.+.++++.+.+.|++++++. +..|.+|+|+|++++.... 
T Consensus       266 ~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~-~~~p~~g~~l~~~~~~~~~-  343 (404)
T PRK09265        266 EGLDMLASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNAIPGVS-CVKPKGALYAFPKLDPKVY-  343 (404)
T ss_pred             HHHHHHhccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-ccCCCcceEEEEEeccccc-
Confidence            434332233456788899999888864221 1122223466777888999998887877 5589999999999864211 


Q ss_pred             CCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          327 DIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       327 ~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      +..++.+++..++.++||.+.||..|+.  ++++|++++.+.+++++++++|+++++.+.
T Consensus       344 ~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~~~~e~l~~~l~rl~~~l~~~~  403 (404)
T PRK09265        344 PIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTLPRVDDLEEAIGRIGRFLSGYR  403 (404)
T ss_pred             CCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHhc
Confidence            1113455666777889999999998853  579999998889999999999999988654

>PRK07683 aminotransferase A; Validated

Probab=100.00  E-value=4.1e-47  Score=352.98  Aligned_cols=353  Identities=23%  Similarity=0.430  Sum_probs=296.9

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCC-CEEEcCChHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAI   86 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~g~~~a~   86 (387)
                      +.+++...|.|    +++.++.+.+++.+.+... ...|++..|..+||+.+++++.+.++..++++ +|++|+|+++|+
T Consensus        28 ~~~i~l~~~~p----~~~~~~~~~~a~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al  102 (387)
T PRK07683         28 DNLISLTIGQP----DFPTPSHVKEAAKRAITEN-YTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAI  102 (387)
T ss_pred             CCeEEecCCCC----CCCCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHH
Confidence            34566777766    6778899999999988754 45788888999999999999988778788888 999999999999


Q ss_pred             HHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCC
Q 038416           87 EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFS  166 (387)
Q Consensus        87 ~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  166 (387)
                      ..++.+++++||+|+++.|+|..+...++  ..|.+++.++.+. +++.+|.+.+++.++++++++++++|+||||.+++
T Consensus       103 ~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~--~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~i~i~~p~NPtG~~~s  179 (387)
T PRK07683        103 DIAFRTILEPGTEVILPAPIYPGYEPIIR--LCGAKPVFIDTRS-TGFRLTAEALENAITEKTRCVVLPYPSNPTGVTLS  179 (387)
T ss_pred             HHHHHHhCCCCCEEEEcCCCccchHHHHH--HcCCEEEEeecCc-ccCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCC
Confidence            99999999999999999999999999999  9999999998753 56778889999998888999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcEEeecccccccccCCCCCcccccc-CCCccEEEEecCcccccccccceEEEEeeCCCCcccchh
Q 038416          167 YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF-GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSG  245 (387)
Q Consensus       167 ~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~  245 (387)
                      .+++++|+++|+++|+++|+|++|+++.+.+. ..++..+ +..+++++++|+||.|+++|+|+||+++++        +
T Consensus       180 ~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~~~--------~  250 (387)
T PRK07683        180 KEELQDIADVLKDKNIFVLSDEIYSELVYEQP-HTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAPS--------Y  250 (387)
T ss_pred             HHHHHHHHHHHHHcCeEEEEecccccceeCCC-cCChhhccCCcCCeEEEeeccccccCccceeEEEEcCH--------H
Confidence            99999999999999999999999999887653 3344444 234679999999999999999999999875        6


Q ss_pred             HHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccc
Q 038416          246 FVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSM  324 (387)
Q Consensus       246 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~  324 (387)
                      +++++..... ...+++.+.|.++..+|.+. +.++++..+.++++++.+.+.|++. ++. +..|.+|+|+|+.++...
T Consensus       251 l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~~~~~~~~~~~~~~~~  327 (387)
T PRK07683        251 LAKHILKVHQYNVTCASSISQYAALEALTAG-KDDAKMMRHQYKKRRDYVYNRLISM-GLD-VEKPTGAFYLFPSIGHFT  327 (387)
T ss_pred             HHHHHHHHHHhccCCCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHc-CCc-ccCCCeeEEEEEecccCC
Confidence            7888776543 23455678899998888753 3567778888999999999999887 676 547889999998876421


Q ss_pred             ccCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          325 LEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       325 ~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                          .++.+++..+++++||.+.||..|..  ++++||+++.+++++.+++++|.+++++..
T Consensus       328 ----~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~~~~~~~~~al~~l~~~l~~~~  385 (387)
T PRK07683        328 ----MSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAYSIETLKEGLDRLEAFLQQKA  385 (387)
T ss_pred             ----CCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHhhc
Confidence                14567777778889999999998865  479999998889999999999999887654

>PRK12414 putative aminotransferase; Provisional

Probab=100.00  E-value=2.2e-47  Score=354.40  Aligned_cols=347  Identities=22%  Similarity=0.386  Sum_probs=290.5

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCC-CCEEEcCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSP-EDVYLTLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~-~~i~~~~g~~~a~~   87 (387)
                      ..+++..|.|    ++++++.+.+++.+.+... ...|++..|..+||+.+++++.+.+|...++ ++|++|+|+++++.
T Consensus        30 ~~i~l~~g~p----~~~~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~  104 (384)
T PRK12414         30 DALNLSQGAP----NFAPDPALVEGVARAMRDG-HNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLY  104 (384)
T ss_pred             CeEEcCCCCC----CCCCCHHHHHHHHHHHHhC-CCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHH
Confidence            3566767766    6788999999999877654 3579888999999999999999888876655 68999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      .++++++++||+|+++.|+|..+...++  ..|.+++.++++. +++.+|++.++++++++++++++++|+||||.+++.
T Consensus       105 ~~~~~l~~~gd~Vlv~~p~y~~~~~~~~--~~g~~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~v~i~~p~NPTG~~~s~  181 (384)
T PRK12414        105 AAISALVHPGDEVIYFEPSFDSYAPIVR--LQGATPVAIKLSP-EDFRVNWDEVAAAITPRTRMIIVNTPHNPSATVFSA  181 (384)
T ss_pred             HHHHHhcCCCCEEEEeCCCccchHHHHH--HcCCEEEEEecCc-cccccCHHHHHhhcCcccEEEEEcCCCCCCCcCCCH
Confidence            9999999999999999999999999999  8999999998753 357899999999998889999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      +++++|+++|+++|+++|+||+|..+.+++....++..+.. .+++++++||||.|+++|+|+||+++++        ++
T Consensus       182 ~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~~--------~l  253 (384)
T PRK12414        182 ADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPA--------EL  253 (384)
T ss_pred             HHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEecCH--------HH
Confidence            99999999999999999999999998887654444544432 4579999999999999999999999975        68


Q ss_pred             HHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccc
Q 038416          247 VDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML  325 (387)
Q Consensus       247 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~  325 (387)
                      ++.+.+... ...+++.+.|.++..++.+..  +..+..+.++++++.+.+.|+++ ++. +..|.+|+|+|++++... 
T Consensus       254 ~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~--~~~~~~~~~~~~r~~l~~~L~~~-g~~-~~~~~gg~~~~~~~~~~~-  328 (384)
T PRK12414        254 MDEIRKVHQFMVFSADTPMQHAFAEALAEPA--SYLGLGAFYQRKRDLLARELAGS-RFE-LLPSEGSFFMLARFRHFS-  328 (384)
T ss_pred             HHHHHHHHhheecCCCcHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHHHHHHhC-CCe-ecCCCcceEEEEcccccC-
Confidence            888877653 356778889999999887532  23456778889999999999987 677 447889999998886311 


Q ss_pred             cCCCcHHHHHHHHHHhcCeEEEcCCccCC----CCeEEEEeeCChHhHHHHHHHHHH
Q 038416          326 EDIGDDLEFCLKLAKEESVIILPGRTVGM----KNWLRIAFAAEPATLEDGLERIKA  378 (387)
Q Consensus       326 ~~~~~~~~~~~~ll~~~gi~v~~g~~~~~----~~~~Ri~~~~~~e~~~~~~~~l~~  378 (387)
                       + .++.+++..+++++||.+.||..|+.    .+++||+++.+++++++++++|.+
T Consensus       329 -~-~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~~~rl~~  383 (384)
T PRK12414        329 -D-ESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSKDDATLVEGARRLCS  383 (384)
T ss_pred             -C-CCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecCCHHHHHHHHHHHhh
Confidence             1 13557777777889999999998853    478999999889999999999864

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=100.00  E-value=1.5e-48  Score=339.78  Aligned_cols=349  Identities=27%  Similarity=0.443  Sum_probs=294.9

Q ss_pred             CCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCC-CCEEEcCChHHHHHHHHH
Q 038416           13 PWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSP-EDVYLTLGCSQAIEISLS   91 (387)
Q Consensus        13 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~-~~i~~~~g~~~a~~~~~~   91 (387)
                      +.-|.|    ++++|+-+.+++++++.....+.|....|.++|++.|++.+.+.+|....+ ++|++|+|+.+++..++.
T Consensus        36 LgqGfp----~~~~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~  111 (420)
T KOG0257|consen   36 LGQGFP----DFPPPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALL  111 (420)
T ss_pred             ccCCCC----CCCCcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHH
Confidence            444445    999999999999999998777899999999999999999999977755555 579999999999999999


Q ss_pred             hhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccC------CCCCccCChhhHHHhhccCceEEEEeCCCCCccccC
Q 038416           92 VLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLL------PEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVF  165 (387)
Q Consensus        92 ~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~  165 (387)
                      .++.+||.|++++|.|..|.....  ..|..++.++..      ..++|.+|.++++.++.++|++|++++||||||.++
T Consensus       112 ~l~~~GDeVii~eP~fd~Y~~~~~--maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~kTk~Ii~ntPhNPtGkvf  189 (420)
T KOG0257|consen  112 GLLNPGDEVIVFEPFFDCYIPQVV--MAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEKTKAIILNTPHNPTGKVF  189 (420)
T ss_pred             HHcCCCCEEEEecCcchhhhhHHh--hcCCcceeeccccccccccCccccCChHHHHhhccCCccEEEEeCCCCCcCccc
Confidence            999999999999999999999999  999999999887      456789999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcccccc-CCCccEEEEecCcccccccccceEEEEeeCCCCcccch
Q 038416          166 SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF-GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNS  244 (387)
Q Consensus       166 ~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~  244 (387)
                      |.+++++|+++|++||+++|.||+|..+.+++..+..+..+ +..++++.++|++|+|++.|||+||+++++        
T Consensus       190 sReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~igp~--------  261 (420)
T KOG0257|consen  190 SREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIGPK--------  261 (420)
T ss_pred             CHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeeeechH--------
Confidence            99999999999999999999999999999998766665554 446789999999999999999999999954        


Q ss_pred             hHHHHHHhhh-hccCCcchHHHHHHHHHhhhcc------H-HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEE
Q 038416          245 GFVDSIKGCL-NAASHPVTFIQAAVPRIVDETN------E-AFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFV  316 (387)
Q Consensus       245 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~------~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~  316 (387)
                      .+........ +..+..+++.|.+...++....      . .+.....+.++++++.+.+.|+++ |+. +..|++++|+
T Consensus       262 ~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~l-g~~-v~~p~gayyl  339 (420)
T KOG0257|consen  262 HLYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEEL-GLK-VTGPEGAYYL  339 (420)
T ss_pred             HhhhhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhc-CCc-cccCCCceEE
Confidence            4555554443 3566777778888777766422      1 334448999999999999999999 899 5599999999


Q ss_pred             EEecCccc----ccCC---CcHHHHHHHHHHhcCeEEEcCCccCCCC-------eEEEEeeCChHhHHHHHHHHH
Q 038416          317 MVKLNVSM----LEDI---GDDLEFCLKLAKEESVIILPGRTVGMKN-------WLRIAFAAEPATLEDGLERIK  377 (387)
Q Consensus       317 ~~~~~~~~----~~~~---~~~~~~~~~ll~~~gi~v~~g~~~~~~~-------~~Ri~~~~~~e~~~~~~~~l~  377 (387)
                      |++++...    .+++   .++..+...++++.|+.+.|++.|+.+.       .+|+++..+++.++.+.++++
T Consensus       340 ~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~~~k~~~~L~~a~e~l~  414 (420)
T KOG0257|consen  340 WADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFCFCKADETLRKAIERLK  414 (420)
T ss_pred             EEeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            99998211    1111   1345677888999999999999998754       566667778888888888887

>PRK08912 hypothetical protein; Provisional

Probab=100.00  E-value=2.9e-47  Score=354.66  Aligned_cols=353  Identities=25%  Similarity=0.391  Sum_probs=295.4

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCC-CEEEcCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~g~~~a~~   87 (387)
                      ..++++.|.|    +.+.|+.+.+++.+.+... ...|++..|..+||+++++++.+.+++.++++ +|++|+|+++++.
T Consensus        27 ~~i~l~~g~p----~~~~p~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~  101 (387)
T PRK08912         27 GAINLGQGFP----DDPGPEDVRRAAADALLDG-SNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALA  101 (387)
T ss_pred             CeEEccCCCC----CCCCCHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHH
Confidence            4577778777    5666788888888876543 35799989999999999999988888888888 9999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      .++.+++++||+|+++.|+|..+...++  ..|.+++.+++++ +++.+|++++++.+.++++++++++|+||||.++|.
T Consensus       102 ~~~~~~~~~gd~Vlv~~p~y~~~~~~~~--~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~  178 (387)
T PRK08912        102 AALLALVEPGDEVVLFQPLYDAYLPLIR--RAGGVPRLVRLEP-PHWRLPRAALAAAFSPRTKAVLLNNPLNPAGKVFPR  178 (387)
T ss_pred             HHHHHhcCCCCEEEEeCCCchhhHHHHH--HcCCEEEEEecCc-ccCcCCHHHHHHHhCccceEEEEeCCCCCcCcccCH
Confidence            9999999999999999999999999999  9999999998753 357899999999998889999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      +++++|+++|+++++++|+||+|..+.+++....++..+.. .+++++++|+||.|+++|+|+||+++++        ++
T Consensus       179 ~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~--------~~  250 (387)
T PRK08912        179 EELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAAP--------PL  250 (387)
T ss_pred             HHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEEEecCH--------HH
Confidence            99999999999999999999999998887644444444432 3578999999999999999999999875        68


Q ss_pred             HHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccc
Q 038416          247 VDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML  325 (387)
Q Consensus       247 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~  325 (387)
                      ++.+..... ...+.++..+.++..++.. .+.++++..+.++++++.+.+.|+.+ ++. +..|.+++|+|++++....
T Consensus       251 ~~~l~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~g~~~l~~~l~~~~~  327 (387)
T PRK08912        251 LRVLAKAHQFLTFTTPPNLQAAVAYGLGK-PDDYFEGMRADLARSRDRLAAGLRRI-GFP-VLPSQGTYFLTVDLAPLGL  327 (387)
T ss_pred             HHHHHHHHhhccccCChHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHhC-CCc-ccCCCcceEEEecccccCC
Confidence            888776643 2355566678887777753 35678888899999999999999988 677 4478889999998864210


Q ss_pred             cCCCcHHHHHHHHHHhcCeEEEcCCccCC----CCeEEEEeeCChHhHHHHHHHHHHHHHH
Q 038416          326 EDIGDDLEFCLKLAKEESVIILPGRTVGM----KNWLRIAFAAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       326 ~~~~~~~~~~~~ll~~~gi~v~~g~~~~~----~~~~Ri~~~~~~e~~~~~~~~l~~~~~~  382 (387)
                        ..++.+++..+++++||.+.||..|+.    .+++||+++.+++++++++++|++++++
T Consensus       328 --~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~~~~~l~~~l~rl~~~l~~  386 (387)
T PRK08912        328 --AEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAKRDATLDEAVERLAAARRR  386 (387)
T ss_pred             --CCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence              024667888887888999999998843    4799999998899999999999988764

>PRK08363 alanine aminotransferase; Validated

Probab=100.00  E-value=3.5e-47  Score=355.22  Aligned_cols=360  Identities=28%  Similarity=0.487  Sum_probs=298.1

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      ..+++.+.|.|.. .++++++.+.+++.+.+... ...|++..|..+||+.+++|++..+++++++++|++|+|+++++.
T Consensus        30 ~~~i~l~~g~p~~-~~~~p~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~  107 (398)
T PRK08363         30 IKVIRLNIGDPVK-FDFQPPEHMKEAYCRAIKEG-HNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQ  107 (398)
T ss_pred             CCeEEEeCCCCCc-CCCCCCHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHH
Confidence            3567777888743 46788999999999988654 347887889999999999999988888899999999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      .++.+++++||+|+++.|+|..+...+.  ..|..++.++...++++.+|+++++++++++++++++++|+||||.+++.
T Consensus       108 ~~~~~~~~~gd~Vl~~~p~y~~~~~~~~--~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~  185 (398)
T PRK08363        108 LIFGALLDPGDEILIPGPSYPPYTGLVK--FYGGVPVEYRTIEEEGWQPDIDDIRKKITEKTKAIAVINPNNPTGALYEK  185 (398)
T ss_pred             HHHHHhCCCCCEEEEcCCCCcchHHHHH--HcCCEEEEeccccccCCcCCHHHHHhhCCcceEEEEEECCCCCCCcCcCH
Confidence            9999999999999999999999999999  89988887743334567789999999998889999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      +++++|+++|+++|+++|+|++|..+.+.+. ..++..+....++++++||||.|+++|+|+||+++.++      ++++
T Consensus       186 ~~~~~l~~~a~~~~~~li~Deay~~~~~~~~-~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~------~~~~  258 (398)
T PRK08363        186 KTLKEILDIAGEHDLPVISDEIYDLMTYEGK-HVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYFVDP------EGKL  258 (398)
T ss_pred             HHHHHHHHHHHHcCeEEEEhhhhhhhccCCc-ccCHHHcCcCCcEEEEecchhccCCccceEEEEEEeCc------HHHH
Confidence            9999999999999999999999999887653 23344455556799999999999999999999998221      1455


Q ss_pred             HHHHhhh----hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcc
Q 038416          248 DSIKGCL----NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVS  323 (387)
Q Consensus       248 ~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~  323 (387)
                      +.+....    ....+++.+.|.++..++.. .+.++.+..+.++++++.+.+.|++++++. +..|.+|+|+|++++..
T Consensus       259 ~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~-~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~-~~~p~g~~~~~~~l~~~  336 (398)
T PRK08363        259 AEVREAIDKLARIRLCPNTPAQFAAIAGLTG-PMDYLEEYMKKLKERRDYIYKRLNEIPGIS-TTKPQGAFYIFPRIEEG  336 (398)
T ss_pred             HHHHHHHHHHhcccccCChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCCE-ecCCCeEEEEEEEeccC
Confidence            5554332    12356788899999888864 457888889999999999999999887777 55788999999888641


Q ss_pred             cccCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHHHh
Q 038416          324 MLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       324 ~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      .   ..++.+++..+++++||.+.||..|+.  ++++||+++.+++++++++++|++++++.
T Consensus       337 ~---~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~~~~~  395 (398)
T PRK08363        337 P---WKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLPPVEILEEAMDRFEEFMRER  395 (398)
T ss_pred             C---CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence            1   013456777777889999999998865  47999999888899999999999988764

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=100.00  E-value=2.6e-47  Score=355.45  Aligned_cols=343  Identities=24%  Similarity=0.363  Sum_probs=287.2

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCC--CCCC-CEEEcCChHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYK--LSPE-DVYLTLGCSQA   85 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~--~~~~-~i~~~~g~~~a   85 (387)
                      ..++++.|.|    ++++++.+.+++++....  ...|++..|.++||+++++|+.+.++.+  ++++ +|++|+|++++
T Consensus        29 ~~i~l~~~~p----~~~~~~~~~~a~~~~~~~--~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~a  102 (393)
T TIGR03538        29 PPIALSIGEP----KHPTPAFVLEALRENLHG--LSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREA  102 (393)
T ss_pred             CeEEecCCCC----CCCCCHHHHHHHHHHhhc--cCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHH
Confidence            4456777776    778899999999987753  4689998999999999999998877765  6775 79999999999


Q ss_pred             HHHHHHhhcCCCCe--EEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccc
Q 038416           86 IEISLSVLARPGAN--ILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGN  163 (387)
Q Consensus        86 ~~~~~~~l~~~g~~--vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~  163 (387)
                      +..++.+++++||+  |+++.|+|..+...+.  ..|.+++.+++.+++++.+|++++++++.++++++++++||||||.
T Consensus       103 l~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPtG~  180 (393)
T TIGR03538       103 LFAFAQAVINPGQAPLVVMPNPFYQIYEGAAL--LAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQLLFVCSPGNPTGA  180 (393)
T ss_pred             HHHHHHHHcCCCCcceEEecCCCCcchHHHHH--hcCCeEEEeeccccCCCCCCHHHHHHHHhhcceEEEEeCCCCCcCc
Confidence            99999999999986  9999999999999999  9999999999976777889999999988778999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCcEEeecccccccccCCC-CCcc-cc---cc--CCCccEEEEecCcccccccccceEEEEeeC
Q 038416          164 VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGST-PYVP-MG---VF--GSIVPVITLGSISKRWIVPGWRLGWLVTSD  236 (387)
Q Consensus       164 ~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~-~~~~-~~---~~--~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~  236 (387)
                      +++.+++++|+++|+++|++||+||+|..+.+.+. ...+ +.   ..  ...+++++++||||.|+++|+|+||+++++
T Consensus       181 ~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~~~  260 (393)
T TIGR03538       181 VLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGDA  260 (393)
T ss_pred             ccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCcccceEEEecCH
Confidence            99999999999999999999999999999887642 2211 11   11  123579999999999999999999999875


Q ss_pred             CCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEE
Q 038416          237 PNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMF  315 (387)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~  315 (387)
                              ++++.+.+... ...+.+.+.|.++...+..  +.++++..+.++++++.+.+.|+++  +. +..|.+|+|
T Consensus       261 --------~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~L~~~--~~-~~~p~gg~f  327 (393)
T TIGR03538       261 --------EILKAFLRYRTYHGCAMPIPTQLASIAAWND--EQHVRENRALYREKFAAVLEILGQV--LD-LELPDAGFY  327 (393)
T ss_pred             --------HHHHHHHHHHHhhccCcCHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHhh--Cc-ccCCCeeEE
Confidence                    68888876654 3456677888887777753  5678888899999999999999875  33 337899999


Q ss_pred             EEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC--------CCeEEEEeeCChHhHHHHHHHHHHH
Q 038416          316 VMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--------KNWLRIAFAAEPATLEDGLERIKAF  379 (387)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--------~~~~Ri~~~~~~e~~~~~~~~l~~~  379 (387)
                      +|++++.       ++.++...+++++||.+.||..|+.        .+++||+++.+++++++++++|.+.
T Consensus       328 ~~~~~~~-------~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~~~~~l~~~l~~l~~~  392 (393)
T TIGR03538       328 LWPKVPG-------DDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVAPLEECVEAAERIRSF  392 (393)
T ss_pred             EEEECCC-------CHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecCCHHHHHHHHHHHHHh
Confidence            9999872       4567888887888999999998752        4689999988899999999999764

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PLN02231 alanine transaminase

Probab=100.00  E-value=3.8e-47  Score=361.68  Aligned_cols=354  Identities=21%  Similarity=0.374  Sum_probs=282.7

Q ss_pred             CCCCcHHHHHHHHHHhcC--C-CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc-CCCC
Q 038416           23 LLSDSTVAEDAVVDALRT--A-HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA-RPGA   98 (387)
Q Consensus        23 ~~~~~~~v~~a~~~~~~~--~-~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~g~   98 (387)
                      ++|.  .+++...+.+..  . ....|++..|.++||+.|++|+.+++|..+++++|++|+|+++++..++.+++ .+||
T Consensus       140 ~fp~--~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~~~gd  217 (534)
T PLN02231        140 LFSA--DAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKD  217 (534)
T ss_pred             cCCH--HHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhccCCCC
Confidence            4444  444444455543  2 35679999999999999999999988888999999999999999999999998 4799


Q ss_pred             eEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc------CceEEEEeCCCCCccccCCHHHHHH
Q 038416           99 NILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE------NTVAIVIINPGNPCGNVFSYQHLQK  172 (387)
Q Consensus        99 ~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~~~~  172 (387)
                      .|+++.|+|+.|...+.  ..|.+++.++++++++|++|+++|+++++.      ++++++++||+||||.+++.+++++
T Consensus       218 ~Vli~~P~Y~~y~~~~~--~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~  295 (534)
T PLN02231        218 GILCPIPQYPLYSASIA--LHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRD  295 (534)
T ss_pred             EEEEeCCCChhHHHHHH--HcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHH
Confidence            99999999999999999  999999999998777899999999998864      6789999999999999999999999


Q ss_pred             HHHHHHhcCcEEeecccccccccC-CCCCccccccC-------CCccEEEEecCcccc-cccccceEEEEeeCCCCcccc
Q 038416          173 IARTARNLGIIVIADEVYNHLAFG-STPYVPMGVFG-------SIVPVITLGSISKRW-IVPGWRLGWLVTSDPNGILQN  243 (387)
Q Consensus       173 l~~~~~~~~~~li~D~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~i~s~sK~~-~~~g~r~G~i~~~~~~~~~~~  243 (387)
                      |+++|+++|++||+||+|.++.|+ +..+.++..+.       .+.++++++|+||.+ +++|+|+||+++...     +
T Consensus       296 Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~-----~  370 (534)
T PLN02231        296 IVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF-----T  370 (534)
T ss_pred             HHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecC-----C
Confidence            999999999999999999999985 34444443331       123689999999975 789999999987420     1


Q ss_pred             hhHHHHHHhhhhccCCcchHHHHHHHHHhhhc-----c-HH---HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceE
Q 038416          244 SGFVDSIKGCLNAASHPVTFIQAAVPRIVDET-----N-EA---FFAKIIGLLKETADICYERIKEIPCITCPVKPQGAM  314 (387)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~-~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~  314 (387)
                      +++++.+.+......+++.+.|.++..+++..     . +.   +.++..+.++++++.+.+.|++++++.+ ..|++|+
T Consensus       371 ~~l~~~l~k~~~~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~~-~~p~Ggf  449 (534)
T PLN02231        371 SDVREQIYKVASVNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTC-NKAEGAM  449 (534)
T ss_pred             HHHHHHHHHHHhhhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcee-cCCCeee
Confidence            36888887665444566778888888888531     1 22   2334568899999999999999888884 4899999


Q ss_pred             EEEEecCccc--cc-----CCCcHHHHHHHHHHhcCeEEEcCCccCC---CCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          315 FVMVKLNVSM--LE-----DIGDDLEFCLKLAKEESVIILPGRTVGM---KNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       315 ~~~~~~~~~~--~~-----~~~~~~~~~~~ll~~~gi~v~~g~~~~~---~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      |+|+++..+.  ..     +..++..++..+++++||.+.||..|+.   ..+||+++..+++++++++++|++++++..
T Consensus       450 ylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~~~~~e~l~eal~RL~~~~~~~~  529 (534)
T PLN02231        450 YLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAIVSRLTEFHKSFM  529 (534)
T ss_pred             EEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHHH
Confidence            9996654210  00     0112334567788889999999999975   346999998899999999999999988876


Q ss_pred             hc
Q 038416          385 KK  386 (387)
Q Consensus       385 ~~  386 (387)
                      ++
T Consensus       530 ~~  531 (534)
T PLN02231        530 DE  531 (534)
T ss_pred             HH
Confidence            53

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=100.00  E-value=7.6e-47  Score=351.70  Aligned_cols=353  Identities=22%  Similarity=0.425  Sum_probs=294.2

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCC-CCEEEcCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSP-EDVYLTLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~-~~i~~~~g~~~a~~   87 (387)
                      ..++.+.|.|    ++++++.+.+++.+.+... ...|++..|.+++|+.+++++...+++.+.+ ++|++|+|+++++.
T Consensus        31 ~~i~l~~~~~----~~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~  105 (391)
T PRK07309         31 GILKLTLGEP----DFTTPDHVKEAAKRAIDAN-QSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALS  105 (391)
T ss_pred             CeEEcCCCCC----CCCCCHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHH
Confidence            4567777666    6788899999999887643 3578888899999999999998877776664 78999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc---CceEEEEeCCCCCcccc
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE---NTVAIVIINPGNPCGNV  164 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~v~l~~p~nptG~~  164 (387)
                      .++.+++++||+|+++.|+|.++...++  ..|.+++.++.+ ++++.+|++.++++++.   +++++++++|+||||.+
T Consensus       106 ~~~~~~~~~gd~vl~~~p~y~~~~~~~~--~~g~~~~~~~~~-~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~  182 (391)
T PRK07309        106 ASLTAILEPGDKVLLPAPAYPGYEPIVN--LVGAEIVEIDTT-ENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVT  182 (391)
T ss_pred             HHHHHhcCCCCEEEEeCCCCcchHHHHH--HcCCEEEEEecC-CcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcC
Confidence            9999999999999999999999999999  999999998874 34567899999998864   57899999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccch
Q 038416          165 FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNS  244 (387)
Q Consensus       165 ~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~  244 (387)
                      ++.+++++|+++|++||+++|+|++|+++.+++....++..+.. +++++++|+||.|+++|+|+||+++++        
T Consensus       183 ~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~i~~~S~SK~~g~~GlRvG~~v~~~--------  253 (391)
T PRK07309        183 YSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLP-DQTILINGLSKSHAMTGWRIGLIFAPA--------  253 (391)
T ss_pred             cCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhcc-CCEEEEecChhhccCccceeEEEEeCH--------
Confidence            99999999999999999999999999999886644445444433 679999999999999999999999976        


Q ss_pred             hHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcc
Q 038416          245 GFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVS  323 (387)
Q Consensus       245 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~  323 (387)
                      ++++.+..... ...+++.+.|.++..++.+.. .+.....+.++++++.+.+.|+++ ++. +..|.+|+|+|++++..
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~p~gg~~~~~~l~~~  330 (391)
T PRK07309        254 EFTAQLIKSHQYLVTAATTMAQFAAVEALTNGK-DDALPMKKEYIKRRDYIIEKMTDL-GFK-IIKPDGAFYIFAKIPAG  330 (391)
T ss_pred             HHHHHHHHHHhhcccCCChHHHHHHHHHHhCCh-hHHHHHHHHHHHHHHHHHHHHHHC-CCe-ecCCCeeEEEEEECCCC
Confidence            78888876543 335678889999999887643 234556677888899999999887 677 54788999999988642


Q ss_pred             cccCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          324 MLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       324 ~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      ..   .++.+++..+++++||.+.||..|+.  ++++||+++.+.+++++++++|+++++++.
T Consensus       331 ~~---~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~i~~l~~~~~~~~  390 (391)
T PRK07309        331 YN---QDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAASMETIKEAMKRLKEYMEEHA  390 (391)
T ss_pred             CC---CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHhhc
Confidence            10   14567787888888999999998865  579999998888999999999999998764

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=100.00  E-value=2.7e-47  Score=356.85  Aligned_cols=344  Identities=18%  Similarity=0.201  Sum_probs=281.5

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCC----CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTA----HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCS   83 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~----~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~   83 (387)
                      ..+++++.|++    ++++++.+.+++.+++...    ....|++..|..+||+++++|+.+.++..+++++|++|+|++
T Consensus        34 ~~~i~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~  109 (409)
T PRK07590         34 AKIIRLGIGDV----TQPLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAK  109 (409)
T ss_pred             CceEEecCcCC----CCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHH
Confidence            34677778776    7889999999999988752    345788889999999999999988888889999999999999


Q ss_pred             HHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCce-----------eeeeccCCCCCccCChhhHHHhhccCceEE
Q 038416           84 QAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLE-----------ARHYDLLPEKRWEVDLDGVEALADENTVAI  152 (387)
Q Consensus        84 ~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v  152 (387)
                      +++..+. .++.+||+|++++|+|..+...++  ..|.+           ++.++++.++++..+.++      ++++++
T Consensus       110 ~al~~l~-~~~~~gd~V~v~~P~Y~~~~~~~~--~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~------~~~k~i  180 (409)
T PRK07590        110 CDTGNIL-DIFGPDNTIAVTDPVYPVYVDTNV--MAGRTGEANEDGRYSGIVYLPCTAENNFVPELPE------EKVDII  180 (409)
T ss_pred             HHHHHHH-HhcCCCCEEEEeCCCCcchHHHHH--HcCCcccccccccccceeEeecccccCCcccCcc------cCceEE
Confidence            9999875 456899999999999999999999  88986           888888655556555332      578999


Q ss_pred             EEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEE
Q 038416          153 VIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGW  231 (387)
Q Consensus       153 ~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~  231 (387)
                      ++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++....++..++. .+++++++||||.|+++|+|+||
T Consensus       181 ~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlRiG~  260 (409)
T PRK07590        181 YLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTGTRCAY  260 (409)
T ss_pred             EEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCcCceeEE
Confidence            99999999999999999999999999999999999999998876643444555543 34789999999999999999999


Q ss_pred             EEeeCCCCcccchhHHHH------------HHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHh
Q 038416          232 LVTSDPNGILQNSGFVDS------------IKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERI  298 (387)
Q Consensus       232 i~~~~~~~~~~~~~~~~~------------~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l  298 (387)
                      +++++        ++++.            +..... ...+++.+.|.++..++....+.++++..+.++++++.+.+.|
T Consensus       261 ~i~~~--------~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L  332 (409)
T PRK07590        261 TVVPK--------ELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGL  332 (409)
T ss_pred             EEcCH--------HHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            99975        56552            111111 1235678899998888875445788888999999999999999


Q ss_pred             hcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHH
Q 038416          299 KEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERI  376 (387)
Q Consensus       299 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l  376 (387)
                      +.+ ++. +..|.+|+|+|++++..     .++.++...+++++||.+.||..|+.  .+++||+++.+++++++++++|
T Consensus       333 ~~~-~~~-~~~~~g~~f~wi~~~~~-----~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~l~rl  405 (409)
T PRK07590        333 ESA-GFE-VYGGVNAPYIWVKTPDG-----MSSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAFGSRENVLEAMERI  405 (409)
T ss_pred             Hhc-CCc-eecCCcceEEEEECCCC-----CCHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEccCCHHHHHHHHHHH
Confidence            988 676 44678999999998742     24567788888888999999998865  4699999877899999999999


Q ss_pred             HHH
Q 038416          377 KAF  379 (387)
Q Consensus       377 ~~~  379 (387)
                      .++
T Consensus       406 ~~~  408 (409)
T PRK07590        406 KKA  408 (409)
T ss_pred             Hhh
Confidence            875

>PRK09082 methionine aminotransferase; Validated

Probab=100.00  E-value=3.3e-47  Score=353.77  Aligned_cols=349  Identities=21%  Similarity=0.330  Sum_probs=296.2

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCC-CEEEcCChHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAI   86 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~g~~~a~   86 (387)
                      +.+++++.|.|    +++.++.+.+++.+.+... ...|++..|..++|+.+++++.+.++...+++ +|++|+|+++++
T Consensus        30 ~~~i~l~~g~~----~~~~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al  104 (386)
T PRK09082         30 HGAINLSQGFP----DFDGPPYLVEALAYAMAAG-HNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEAL  104 (386)
T ss_pred             CCEEEecCCCC----CCCCCHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHH
Confidence            45577778776    6778899999999987653 35788888999999999999988777666665 899999999999


Q ss_pred             HHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCC
Q 038416           87 EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFS  166 (387)
Q Consensus        87 ~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  166 (387)
                      ..++.+++++||+|+++.|+|..+...++  ..|.+++.++++. .++.+|++++++.++++++++++++|+||||.+++
T Consensus       105 ~~~~~~~~~~gd~Vli~~p~y~~~~~~~~--~~g~~~~~~~~~~-~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~  181 (386)
T PRK09082        105 FAAILALVRPGDEVIVFDPSYDSYAPAIE--LAGGRAVRVALQP-PDFRVDWQRFAAAISPRTRLIILNTPHNPSGTVWS  181 (386)
T ss_pred             HHHHHHHcCCCCEEEEeCCCchhhHHHHH--HcCCEEEEEecCc-ccccCCHHHHHHhcCccceEEEEeCCCCCCCcCCC
Confidence            99999999999999999999999999999  8999999999864 35789999999999888999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEeeCCCCcccchh
Q 038416          167 YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSG  245 (387)
Q Consensus       167 ~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~  245 (387)
                      .+++++|+++|+++++++|+|++|.++.+++....++..+.. .+++++++||||.|+++|+|+||+++++        +
T Consensus       182 ~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~~--------~  253 (386)
T PRK09082        182 AADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAPA--------A  253 (386)
T ss_pred             HHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhhhhCCH--------H
Confidence            999999999999999999999999998887654445544433 4689999999999999999999999875        7


Q ss_pred             HHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccc
Q 038416          246 FVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSM  324 (387)
Q Consensus       246 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~  324 (387)
                      +++.+.+... ...+++.+.|.++..++.. .+.++++..+.++++++.+.+.|++. ++. +..+++|+|+|++++.. 
T Consensus       254 l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~-~~~~~g~~~~~~~~~~~-  329 (386)
T PRK09082        254 LSAEFRKVHQYNTFTVNTPAQLALADYLRA-EPEHYLELPAFYQAKRDRFRAALANS-RFK-LLPCEGTYFQLVDYSAI-  329 (386)
T ss_pred             HHHHHHHHHhhhcCCCChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhC-CCc-ccCCCeeEEEEEecccc-
Confidence            8888877653 4567788899998888863 45677888889999999999999986 677 44788999999998741 


Q ss_pred             ccCCCcHHHHHHHHHHhcCeEEEcCCccCC----CCeEEEEeeCChHhHHHHHHHHHH
Q 038416          325 LEDIGDDLEFCLKLAKEESVIILPGRTVGM----KNWLRIAFAAEPATLEDGLERIKA  378 (387)
Q Consensus       325 ~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~----~~~~Ri~~~~~~e~~~~~~~~l~~  378 (387)
                       ++ .++.++...+++++||.+.||..|+.    .+++||+++.+++++++++++|++
T Consensus       330 -~~-~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~~~~~l~~~~~rl~~  385 (386)
T PRK09082        330 -SD-LDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAKQEETLDAAAERLCQ  385 (386)
T ss_pred             -CC-CCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecCCHHHHHHHHHHHhh
Confidence             11 25677888888899999999998743    478999998889999999999864

>PRK07550 hypothetical protein; Provisional

Probab=100.00  E-value=1e-46  Score=350.81  Aligned_cols=349  Identities=25%  Similarity=0.299  Sum_probs=293.8

Q ss_pred             ccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHH
Q 038416           10 RHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEIS   89 (387)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~   89 (387)
                      .++++.|.|    ++++++.+.+++.+.........|++..|.++||+.+++++.+.++..+++++|++|+|+++++..+
T Consensus        31 ~i~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~  106 (386)
T PRK07550         31 LIDLSQAVP----GYPPPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAA  106 (386)
T ss_pred             eEEeCCCCC----CCCCCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHH
Confidence            566777666    6677899999999887654556798888999999999999998888888899999999999999999


Q ss_pred             HHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHH
Q 038416           90 LSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQH  169 (387)
Q Consensus        90 ~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~  169 (387)
                      +.+++++||+|+++.|+|..+...++  ..|.+++.+++++++++.+|+++++++++++++++++++|+||||.++|.++
T Consensus       107 ~~~l~~~gd~Vlv~~p~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~P~NPtG~~~~~~~  184 (386)
T PRK07550        107 MVTLAGAGDEVILPLPWYFNHKMWLD--MLGIRPVYLPCDEGPGLLPDPAAAEALITPRTRAIALVTPNNPTGVVYPPEL  184 (386)
T ss_pred             HHHhcCCCCEEEEcCCCCcchHHHHH--hcCCEEEEEecCCCcCCCCCHHHHHHHhcccCcEEEEeCCCCCCCcccCHHH
Confidence            99999999999999999999998999  9999999999876667788999999999888999999999999999999999


Q ss_pred             HHHHHHHHHhcCcEEeecccccccccCCCCCccccc-cCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHH
Q 038416          170 LQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV-FGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD  248 (387)
Q Consensus       170 ~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~  248 (387)
                      +++|+++|+++|+++|+|++|+++.+.+....++.. .+..++++++.||||.|+++|+|+||+++++        ++++
T Consensus       185 ~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~--------~~~~  256 (386)
T PRK07550        185 LHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASP--------ARIA  256 (386)
T ss_pred             HHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeeecCH--------HHHH
Confidence            999999999999999999999988654322222222 2234578999999999999999999999975        6777


Q ss_pred             HHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccC
Q 038416          249 SIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLED  327 (387)
Q Consensus       249 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  327 (387)
                      .+..... ...+++.+.|.++..++.. .+.++++..+.++++++.+.+.|+.++++. + .+.+|+|+|++++...   
T Consensus       257 ~~~~~~~~~~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~-~~~g~~~~~~~~~~~~---  330 (386)
T PRK07550        257 EIEKFMDTVAICAPRIGQIAVAWGLPN-LADWRAGNRAEIARRRDAFRAVFARLPGWE-L-LASGAYFAYVRHPFPD---  330 (386)
T ss_pred             HHHHHHhhcccCCCcHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHhCCCce-e-CCCceEEEEecCCCCC---
Confidence            7776654 4556788899999888875 456777888889999999999998875665 3 4678999999886411   


Q ss_pred             CCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeC-ChHhHHHHHHHHHHH
Q 038416          328 IGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAA-EPATLEDGLERIKAF  379 (387)
Q Consensus       328 ~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~-~~e~~~~~~~~l~~~  379 (387)
                       .++.+++..+++++||.+.||..|+.  .+++||+++. +++++++++++|.++
T Consensus       331 -~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~~~~~l~~~  384 (386)
T PRK07550        331 -RPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELVERLRAF  384 (386)
T ss_pred             -CCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecCCHHHHHHHHHHHHhh
Confidence             15678888888888999999998864  5799999974 789999999999764

>PRK07777 aminotransferase; Validated

Probab=100.00  E-value=1.6e-46  Score=349.67  Aligned_cols=353  Identities=24%  Similarity=0.397  Sum_probs=294.7

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCC-CEEEcCChHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAI   86 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~g~~~a~   86 (387)
                      ..+++++.|.|    +.+.++.+.+++.+.+... ..+|++..|..++|+++++++.+.++....++ +|++|+|+++++
T Consensus        24 ~~~i~l~~g~p----~~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al   98 (387)
T PRK07777         24 TGAVNLGQGFP----DEDGPPEMLEAAQEAIAGG-VNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAI   98 (387)
T ss_pred             CCeEEccCCCC----CCCCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHH
Confidence            35678888887    5666778888888877654 35798888999999999999988888777776 799999999999


Q ss_pred             HHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCC-CCccCChhhHHHhhccCceEEEEeCCCCCccccC
Q 038416           87 EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPE-KRWEVDLDGVEALADENTVAIVIINPGNPCGNVF  165 (387)
Q Consensus        87 ~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~  165 (387)
                      ..++.+++++||+|+++.|+|..+...+.  ..|.+++.+++++. .++.+|++++++.+++++++|++++|+||||..+
T Consensus        99 ~~~~~~~~~~gd~vli~~p~y~~~~~~~~--~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~  176 (387)
T PRK07777         99 AAAVLGLVEPGDEVLLIEPYYDSYAAVIA--MAGAHRVPVPLVPDGRGFALDLDALRAAVTPRTRALIVNSPHNPTGTVL  176 (387)
T ss_pred             HHHHHHhcCCCCEEEEeCCCchhhHHHHH--HCCCEEEEeecCCccCCCcCCHHHHHHhcCcccEEEEEcCCCCCCCccC
Confidence            99999999999999999999999999989  89999999988765 3677999999999988899999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEeeCCCCcccch
Q 038416          166 SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNS  244 (387)
Q Consensus       166 ~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~  244 (387)
                      +.+++++|+++|+++++++|+|++|.++.+.+....++..+.. .+++++++||||.|+++|+|+||+++++        
T Consensus       177 ~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~--------  248 (387)
T PRK07777        177 TAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWACGPA--------  248 (387)
T ss_pred             CHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeEEEecCH--------
Confidence            9999999999999999999999999998886654444444432 4578999999999999999999999875        


Q ss_pred             hHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcc
Q 038416          245 GFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVS  323 (387)
Q Consensus       245 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~  323 (387)
                      ++++.+..... .....+.+.|.++..++.. .+.++++..+.++++++.+.+.|+++ ++. +..|.+++|+|++++..
T Consensus       249 ~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~~~~~g~~~~~~~~~~~  325 (387)
T PRK07777        249 PLIAAVRAAKQYLTYVGGAPFQPAVAHALDH-EDAWVAALRDSLQAKRDRLAAGLAEA-GFE-VHDSAGTYFLCADPRPL  325 (387)
T ss_pred             HHHHHHHHHHhhcccCCCCHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHHhC-CCC-ccCCCcceEEEeccccc
Confidence            67877776543 3445677788888887764 35778888899999999999999987 677 44788899999887531


Q ss_pred             cccCCCcHHHHHHHHHHhcCeEEEcCCccCC-----CCeEEEEeeCChHhHHHHHHHHHHHHH
Q 038416          324 MLEDIGDDLEFCLKLAKEESVIILPGRTVGM-----KNWLRIAFAAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       324 ~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-----~~~~Ri~~~~~~e~~~~~~~~l~~~~~  381 (387)
                      .   ..++.+++..+++++||.+.||..|+.     .+++||+++.+++++++++++|+++..
T Consensus       326 ~---~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~~~~~l~~~l~~l~~~~~  385 (387)
T PRK07777        326 G---YDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCKRDDTLDEAIRRLRALRG  385 (387)
T ss_pred             C---CCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecCCHHHHHHHHHHHHHHhc
Confidence            1   124678888888888999999988753     358999998889999999999987653

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=100.00  E-value=1.8e-46  Score=344.37  Aligned_cols=339  Identities=24%  Similarity=0.377  Sum_probs=284.2

Q ss_pred             CCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCC-CEEEcCChHHHHHHHH
Q 038416           12 SPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIEISL   90 (387)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~g~~~a~~~~~   90 (387)
                      ++..|+|    ++++++.+.+++++....  ...|++..|..+||+++++++.+.+|+.++++ +|++|+|+++++..++
T Consensus         4 ~~~~g~p----~~~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~   77 (350)
T TIGR03537         4 DFGTGDP----KEPTPPFIRKALIDAVPE--VSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFP   77 (350)
T ss_pred             eccCCCC----CCCCCHHHHHHHHHHHhc--cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHH
Confidence            4556665    788899999999988643  56799888999999999999998888888887 9999999999999999


Q ss_pred             HhhcCCC---CeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           91 SVLARPG---ANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        91 ~~l~~~g---~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      .+++++|   |.|+++.|+|..+...++  ..|.+++.++++.++++.+|+++++++++++++++++++|+||||.+++.
T Consensus        78 ~~~~~~g~~~d~Vl~~~p~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~  155 (350)
T TIGR03537        78 LVFIDPEEDRRRVIFGTPGYPVYERGAL--FAGGEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTGATAPR  155 (350)
T ss_pred             HHHcCCCCCCceEEEcCCCCcchHHHHH--hcCCEEEEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCcCcccCH
Confidence            9999877   699999999999999999  99999999998766778899999999998899999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      +++++|+++|+++|+++|+||+|..+.+++ ...++..++ .+++++++|+||.++++|+|+||+++++        ++.
T Consensus       156 ~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~-~~~~i~~~s~SK~~g~~GlRiG~~~~~~--------~~~  225 (350)
T TIGR03537       156 SYLKETIAMCREHGIILCSDECYTEIYFGE-PPHSALEVG-IENVLAFHSLSKRSGMTGYRSGFVAGDE--------KLI  225 (350)
T ss_pred             HHHHHHHHHHHHcCcEEEEeccccccccCC-CCCchhhcC-cCCEEEEeecccccCCccccceeeecCH--------HHH
Confidence            999999999999999999999999876654 333333333 3579999999999999999999999764        677


Q ss_pred             HHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccccc
Q 038416          248 DSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE  326 (387)
Q Consensus       248 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~  326 (387)
                      +.++.... ...+.+++.|.++...+..  +.++.+..+.++++++.+.+.|+.+ ++. +..|.+|+|+|++++..   
T Consensus       226 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~r~~l~~~~~~~~~~l~~~-g~~-~~~~~g~~~~~~~~~~~---  298 (350)
T TIGR03537       226 SFLRKLRANFGVASPDFVQAAAKAAWSD--DNHVLERRKIFKRKRDLFIEFFNKV-GLE-YLYPDATFYLWVKVPSG---  298 (350)
T ss_pred             HHHHHHHHhhccCCCHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHHHC-CCc-ccCCCeEEEEEEECCCC---
Confidence            77776643 3344555677777666653  4667788889999999999999887 677 54788899999998742   


Q ss_pred             CCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHH
Q 038416          327 DIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKA  378 (387)
Q Consensus       327 ~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~  378 (387)
                        .+..++...+++ +||.+.||..|+.  .+++||+++.+++++++++++|++
T Consensus       299 --~~~~~l~~~L~~-~gv~v~~g~~f~~~~~~~~Ri~~~~~~~~~~~~l~~~~~  349 (350)
T TIGR03537       299 --IDAKDYALRLLE-NGIVVAPGENFGSGEEGYVRVALVPTLEECEEALRLWER  349 (350)
T ss_pred             --CCHHHHHHHHHH-CCEEEcCchhhCCCCCCEEEEEecCCHHHHHHHHHHHhc
Confidence              145677777754 6999999998865  589999998788999999998865

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK07568 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3.8e-46  Score=348.80  Aligned_cols=352  Identities=27%  Similarity=0.438  Sum_probs=294.2

Q ss_pred             ccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHH
Q 038416           10 RHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEIS   89 (387)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~   89 (387)
                      +++...|.|    ++++++.+.+++.+...  ....|++..|..++|+.+++++. ..+.++++++|++|+|+++++..+
T Consensus        32 ~i~l~~~~~----~~~~~~~~~~a~~~~~~--~~~~Y~~~~g~~~lr~~ia~~~~-~~~~~~~~~~i~~t~G~~~al~~~  104 (397)
T PRK07568         32 VYHLNIGQP----DIKTPEVFFEAIKNYDE--EVLAYSHSQGIPELREAFAKYYK-KWGIDVEPDEILITNGGSEAILFA  104 (397)
T ss_pred             EEEecCCCC----CCCCCHHHHHHHHHHhc--CCcCcCCCCCCHHHHHHHHHHHH-HhCCCCCcceEEEcCChHHHHHHH
Confidence            455666665    77788999999987654  24578888899999999999998 467778899999999999999999


Q ss_pred             HHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccC-ChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           90 LSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEV-DLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        90 ~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      +.+++++||+|+++.|+|..+...++  ..|.++..++++.++++.. +++++++++++++++|++++|+||||.+++.+
T Consensus       105 ~~~l~~~gd~Vl~~~p~y~~~~~~~~--~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~  182 (397)
T PRK07568        105 MMAICDPGDEILVPEPFYANYNGFAT--SAGVKIVPVTTKIEEGFHLPSKEEIEKLITPKTKAILISNPGNPTGVVYTKE  182 (397)
T ss_pred             HHHhcCCCCEEEEecCCCccHHHHHH--HcCCEEEEeecCcccCCCCCCHHHHHHhcCccceEEEEECCCCCCCccCCHH
Confidence            99999999999999999999988888  8999999998865555543 57999999988999999999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      ++++|+++|+++|+++|+|++|.++.+++....++..+.. .+++++++|+||.|+++|+|+||+++++       ++++
T Consensus       183 ~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~-------~~~~  255 (397)
T PRK07568        183 ELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISKN-------KELI  255 (397)
T ss_pred             HHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEecCC-------HHHH
Confidence            9999999999999999999999999887654445555443 4689999999999999999999999853       2577


Q ss_pred             HHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccC
Q 038416          248 DSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLED  327 (387)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  327 (387)
                      +.+.+......+++.+.|.++..+++. .+.++++..+.++++++.+.+.|++++++. +..|.+|+|+|++++..    
T Consensus       256 ~~~~~~~~~~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~p~g~~~~~~~l~~~----  329 (397)
T PRK07568        256 AAAMKLCQARLSPPTLEQIGAAALLDT-PESYFDEVREEYKKRRDILYEELNKIPGVV-CEKPKGAFYIIAKLPVD----  329 (397)
T ss_pred             HHHHHHhhccCCCCcHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHHHHHHHhcCCCce-ecCCCcceEEEEecCCC----
Confidence            666554333456788899999998875 357788889999999999999999887776 55788999999998641    


Q ss_pred             CCcHHHHHHHHHHh-----cCeEEEcCCccCC-----CCeEEEEeeCChHhHHHHHHHHHHHHHHhhh
Q 038416          328 IGDDLEFCLKLAKE-----ESVIILPGRTVGM-----KNWLRIAFAAEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       328 ~~~~~~~~~~ll~~-----~gi~v~~g~~~~~-----~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                        +..++...++++     +||.+.||..|..     ++++||+++.+++++++++++|.++++++.+
T Consensus       330 --~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~~~~~~~~~~~~~l~~~l~~~~~  395 (397)
T PRK07568        330 --DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVLNEEDLKRAMEILKEALEKYNK  395 (397)
T ss_pred             --CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHHHHHhhc
Confidence              456777777654     6999999988832     3699999988889999999999999988663

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=1.3e-46  Score=355.25  Aligned_cols=329  Identities=20%  Similarity=0.347  Sum_probs=271.4

Q ss_pred             CCCCCCCCcHHHHHHHHHHHhhcCCC--CCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccC-CC
Q 038416           44 NCYSPTLGVPSARRGIADYLNRDLPY--KLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSN-NN  120 (387)
Q Consensus        44 ~~y~~~~~~~~lr~~ia~~~~~~~~~--~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~-~g  120 (387)
                      ..|++..|..+||+++|+|+.+.++.  .+++++|++|+|+++++..++.+++++||.|+++.|+|..+...+.  . .|
T Consensus        80 ~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~--~~~g  157 (468)
T PLN02450         80 ALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLK--WRTG  157 (468)
T ss_pred             hcCCCCCChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhCCCCCEEEECCCCCCchHHHHh--hcCC
Confidence            45888889999999999999987664  4688999999999999999999999999999999999999876655  4 79


Q ss_pred             ceeeeeccCCCCCccCChhhHHHhhcc------CceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccc
Q 038416          121 LEARHYDLLPEKRWEVDLDGVEALADE------NTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLA  194 (387)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~  194 (387)
                      .+++.+++..++++.++++.+++++.+      +++++++++||||||.++|.+++++|+++|++++++||+||+|+++.
T Consensus       158 ~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~  237 (468)
T PLN02450        158 VEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTV  237 (468)
T ss_pred             cEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccc
Confidence            999999987667888899999987753      68899999999999999999999999999999999999999999988


Q ss_pred             cCCCCCcccccc---------CCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhhccCCcchHHH
Q 038416          195 FGSTPYVPMGVF---------GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQ  265 (387)
Q Consensus       195 ~~~~~~~~~~~~---------~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (387)
                      |.+..+.++...         +..+++++++||||.|+++|+|+||+++++       +.+.+.+.+... ....+.+.|
T Consensus       238 f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~-------~~l~~~~~~~~~-~~~~s~~~Q  309 (468)
T PLN02450        238 FDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSND-------EMVVSAATKMSS-FGLVSSQTQ  309 (468)
T ss_pred             cCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECC-------HHHHHHHHHHhh-cCCCCHHHH
Confidence            876544332211         134689999999999999999999999974       134555544432 234678899


Q ss_pred             HHHHHHhhhcc--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccc-cCCCcHHHHHHHHHHhc
Q 038416          266 AAVPRIVDETN--EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML-EDIGDDLEFCLKLAKEE  342 (387)
Q Consensus       266 ~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~  342 (387)
                      .++..+|++..  ..++.+..++++++++.+.+.|+++ ++. +..|.+|+|+|++++.... ..+....++...+++++
T Consensus       310 ~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~-gi~-~~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~  387 (468)
T PLN02450        310 YLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAA-GIK-CLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEV  387 (468)
T ss_pred             HHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCc-ccCCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhC
Confidence            99999998743  2467888899999999999999998 777 4478899999999864211 01112345777788888


Q ss_pred             CeEEEcCCccCC--CCeEEEEeeC-ChHhHHHHHHHHHHHHHHhh
Q 038416          343 SVIILPGRTVGM--KNWLRIAFAA-EPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       343 gi~v~~g~~~~~--~~~~Ri~~~~-~~e~~~~~~~~l~~~~~~~~  384 (387)
                      ||.+.||..|+.  ++||||+++. +++++++++++|++++++..
T Consensus       388 gV~v~PG~~f~~~~~g~~Rl~f~~~~~~~l~~~l~ri~~~l~~~~  432 (468)
T PLN02450        388 KLNISPGSSCHCTEPGWFRVCFANMSEETLDLAMKRLKSFVESDS  432 (468)
T ss_pred             CEEEeCccccCCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHhcc
Confidence            999999998865  5799999985 89999999999999997765

>PRK05839 hypothetical protein; Provisional

Probab=100.00  E-value=2.2e-46  Score=346.26  Aligned_cols=340  Identities=22%  Similarity=0.327  Sum_probs=277.7

Q ss_pred             cccccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHH
Q 038416            5 KGQETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQ   84 (387)
Q Consensus         5 ~g~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~   84 (387)
                      ++...+++++.|.|    ++++++.+.+++.+....  ...|++..|..+||++++++++++++..+++++|++|+|+++
T Consensus        21 ~~~~~~i~l~~~~p----~~~~~~~~~~a~~~~~~~--~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~   94 (374)
T PRK05839         21 NKEYKGLDLTIGEP----QFETPKFIQDALKNNAHL--LNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTRE   94 (374)
T ss_pred             cCCCCeEEcCCCCC----CCCCCHHHHHHHHHHhhc--cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHH
Confidence            33445666667766    678889999999887643  568999889999999999999988888889999999999999


Q ss_pred             HHHHHHHhhc--CCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCcc
Q 038416           85 AIEISLSVLA--RPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCG  162 (387)
Q Consensus        85 a~~~~~~~l~--~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG  162 (387)
                      ++..++.+++  ++||.|+++.|+|+.+...+.  ..|++++.++++.++++.+|+...+  + ++++++++++||||||
T Consensus        95 al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~--~~g~~v~~v~~~~~~~~~~d~~~~~--~-~~~k~v~i~nP~NPTG  169 (374)
T PRK05839         95 VLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAI--ASRAKVLLMPLTKENDFTPSLNEKE--L-QEVDLVILNSPNNPTG  169 (374)
T ss_pred             HHHHHHHHHhcCCCCCEEEECCCCchhhHHHHH--hcCCEEEEeecccccCCcCCcchhh--h-ccccEEEEeCCCCCcC
Confidence            9999988774  578999999999999999999  9999999999876667777665432  2 4689999999999999


Q ss_pred             ccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcccccc------CCCccEEEEecCcccccccccceEEEEeeC
Q 038416          163 NVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF------GSIVPVITLGSISKRWIVPGWRLGWLVTSD  236 (387)
Q Consensus       163 ~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~------~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~  236 (387)
                      .+++.+++++|+++|+++|++||+||+|.++.+.+ ...++...      ...+++++++||||.|+++|+|+||+++++
T Consensus       170 ~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~-~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~~~  248 (374)
T PRK05839        170 RTLSLEELIEWVKLALKHDFILINDECYSEIYENT-PPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGDA  248 (374)
T ss_pred             cccCHHHHHHHHHHHHHcCCEEEeccchhhcccCC-CCCCHhhhhcccCccccCcEEEEeccccccCCccceeEEEecCH
Confidence            99999999999999999999999999999976433 22232211      123689999999999999999999999865


Q ss_pred             CCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEE
Q 038416          237 PNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMF  315 (387)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~  315 (387)
                              ++++++..... .....+.+.|.++..++..  +.++++..+.++++++.+.+.|    ++.   .|.+|+|
T Consensus       249 --------~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~l----~~~---~p~gg~f  311 (374)
T PRK05839        249 --------SILKKYKAYRTYLGCASPLPLQKAAAVAWLD--DEHAEFFRNIYAKNLKLAREIL----GIT---IPPATFY  311 (374)
T ss_pred             --------HHHHHHHHHHhhcCCCCChHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHhc----CCC---CCCeeEE
Confidence                    68888876643 3456677788888777753  5677888888888888777655    333   6789999


Q ss_pred             EEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC----CCeEEEEeeCChHhHHHHHHHHHHHHH
Q 038416          316 VMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM----KNWLRIAFAAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~----~~~~Ri~~~~~~e~~~~~~~~l~~~~~  381 (387)
                      +|++++        +..++...+++++||.+.||..|+.    .+++||+++.+++++.+++++|+++++
T Consensus       312 i~~~~~--------~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~l~~l~~~l~  373 (374)
T PRK05839        312 VWLPVD--------NDEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVYDTPKLEKALEIIKTYLE  373 (374)
T ss_pred             EEEeCC--------ChHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecCCHHHHHHHHHHHHHHhh
Confidence            999986        3467888887778999999987764    489999998889999999999998874

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=100.00  E-value=5.6e-46  Score=348.98  Aligned_cols=356  Identities=24%  Similarity=0.365  Sum_probs=300.9

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCC--C-CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTA--H-YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQ   84 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~--~-~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~   84 (387)
                      ...+++..|.|  ++.+.+...+.+++...+...  . ...|.+..|..+||+.|++++....|+.+++++|++|+|+++
T Consensus        89 ~~~i~f~~g~p--~~~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~  166 (459)
T COG1167          89 PSVIDFAGGLP--DPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQ  166 (459)
T ss_pred             CceecCCCCCC--CcccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHH
Confidence            44555556554  224456667777777777532  2 457888899999999999999988999999999999999999


Q ss_pred             HHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc-CceEEEEe-CCCCCcc
Q 038416           85 AIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE-NTVAIVII-NPGNPCG  162 (387)
Q Consensus        85 a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~-~p~nptG  162 (387)
                      |+..+++.+++|||+|++++|+|++....++  ..|++++.+|++.   .++|+++|++.+.. +.++++++ +.|||||
T Consensus       167 al~l~~~~l~~pGd~v~vE~PtY~~~~~~~~--~~g~~~~~vp~d~---~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG  241 (459)
T COG1167         167 ALDLLLRLLLDPGDTVLVEDPTYPGALQALE--ALGARVIPVPVDE---DGIDPEALEEALAQWKPKAVYVTPTFQNPTG  241 (459)
T ss_pred             HHHHHHHHhCCCCCEEEEcCCCcHHHHHHHH--HcCCcEEecCCCC---CCCCHHHHHHHHhhcCCcEEEECCCCCCCCC
Confidence            9999999999999999999999999999999  9999999999863   37899999998876 35555444 3389999


Q ss_pred             ccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCccc
Q 038416          163 NVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQ  242 (387)
Q Consensus       163 ~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~  242 (387)
                      .+||.++.++|+++|++||++||+||.|+.+.+++.+..++..++..+++++++||||. ..||+|+||++++.      
T Consensus       242 ~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~-l~PglRlG~vv~p~------  314 (459)
T COG1167         242 VTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKT-LAPGLRLGYVVAPP------  314 (459)
T ss_pred             CccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeehhh-cccccceeeeeCCH------
Confidence            99999999999999999999999999999999998888888889888999999999999 69999999999986      


Q ss_pred             chhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCCCceEEEEEe
Q 038416          243 NSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDET-NEAFFAKIIGLLKETADICYERIKEI-PCITCPVKPQGAMFVMVK  319 (387)
Q Consensus       243 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~g~~~~~~  319 (387)
                        ++++++...+. ....++.+.|.+++..+.++ .+.++.+.++.++++++.+.+.|+++ |+...++.|.+|+|+|++
T Consensus       315 --~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~gG~flwl~  392 (459)
T COG1167         315 --ELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLE  392 (459)
T ss_pred             --HHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecCCceEEEEEE
Confidence              78888888764 56788999999999998853 37888999999999999999999985 434447789999999999


Q ss_pred             cCcccccCCCcHHHHHHHHHHhcCeEEEc-CCccCCC----CeEEEEeeC-ChHhHHHHHHHHHHHHHHhhh
Q 038416          320 LNVSMLEDIGDDLEFCLKLAKEESVIILP-GRTVGMK----NWLRIAFAA-EPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~ll~~~gi~v~~-g~~~~~~----~~~Ri~~~~-~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      ++..     .+..+++... .++|+.+.| |..|...    +++|++++. +.+++++++++|.+++++...
T Consensus       393 l~~~-----~~~~~l~~~a-~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~~e~i~~gi~~l~~~~~~~~~  458 (459)
T COG1167         393 LPEG-----IDARELLAAA-LEKGVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLAALLREAAA  458 (459)
T ss_pred             cCCC-----CCHHHHHHHH-HHCCCEEEcCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            9864     2556666665 556999998 8888653    489999964 789999999999999987653

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=3.9e-46  Score=352.95  Aligned_cols=329  Identities=20%  Similarity=0.358  Sum_probs=269.0

Q ss_pred             CCCCCCCCcHHHHHHHHHHHhhcCC--CCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccC-CC
Q 038416           44 NCYSPTLGVPSARRGIADYLNRDLP--YKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSN-NN  120 (387)
Q Consensus        44 ~~y~~~~~~~~lr~~ia~~~~~~~~--~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~-~g  120 (387)
                      ..|++..|.++||+++|+|+.+.+|  ..+++++|++|+|+++++..++.+++++||.|+++.|+|..+...+.  . .|
T Consensus        88 ~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~~--~~~G  165 (496)
T PLN02376         88 ANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDRDLR--WRTG  165 (496)
T ss_pred             hccCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhCCCCCEEEECCCCccchHHHHH--hhCC
Confidence            4577788999999999999998777  56889999999999999999999999999999999999999987655  4 79


Q ss_pred             ceeeeeccCCCCCccCChhhHHHhh------ccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccc
Q 038416          121 LEARHYDLLPEKRWEVDLDGVEALA------DENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLA  194 (387)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~  194 (387)
                      ++++.+++..+++++++++.+++++      ..+++++++++|+||||.+++.+++++|+++|++++++||+||+|+.+.
T Consensus       166 ~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~  245 (496)
T PLN02376        166 VEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATV  245 (496)
T ss_pred             CEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccc
Confidence            9999999876667889999997653      2367889999999999999999999999999999999999999999998


Q ss_pred             cCCCCCcccccc----CC----CccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhhccCCcchHHHH
Q 038416          195 FGSTPYVPMGVF----GS----IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQA  266 (387)
Q Consensus       195 ~~~~~~~~~~~~----~~----~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (387)
                      |++..+.++..+    +.    .++++++.||||.|+++|+|+||+++++       +.+.+.++.... ....+.+.|.
T Consensus       246 f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~-------~~l~~~~~~~~~-~~~vs~~~Q~  317 (496)
T PLN02376        246 FAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFN-------DSVVSCARKMSS-FGLVSSQTQL  317 (496)
T ss_pred             cCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECC-------HHHHHHHHHHhh-cCCCCHHHHH
Confidence            877656554443    11    1357789999999999999999999854       145554444332 3457888999


Q ss_pred             HHHHHhhhcc--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccc--cCCCcHHHHHHHHHHhc
Q 038416          267 AVPRIVDETN--EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML--EDIGDDLEFCLKLAKEE  342 (387)
Q Consensus       267 ~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~  342 (387)
                      ++..++++..  +.++.+..++++++++.+.+.|++. ++.+. .|.+|+|+|++++....  ....+..++...++++.
T Consensus       318 a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~-gi~~~-~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~  395 (496)
T PLN02376        318 MLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKA-DIACL-TSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKV  395 (496)
T ss_pred             HHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCccc-CCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcC
Confidence            9999998643  3556677888999999999999887 77744 78999999999965321  11112356777787888


Q ss_pred             CeEEEcCCccCC--CCeEEEEeeC-ChHhHHHHHHHHHHHHHHhh
Q 038416          343 SVIILPGRTVGM--KNWLRIAFAA-EPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       343 gi~v~~g~~~~~--~~~~Ri~~~~-~~e~~~~~~~~l~~~~~~~~  384 (387)
                      ||.+.||..|+.  ++||||+++. +++.+++++++|++++.+.+
T Consensus       396 gV~v~pGs~F~~~~~g~~Ri~fa~~~~~~l~~al~rl~~~l~~~~  440 (496)
T PLN02376        396 KLNVSPGSSFRCTEPGWFRICFANMDDDTLHVALGRIQDFVSKNK  440 (496)
T ss_pred             CEEEeCccccCCCCCCEEEEEeeCCCHHHHHHHHHHHHHHHHHhh
Confidence            999999999864  6899999984 78999999999999987544

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=5.1e-46  Score=348.50  Aligned_cols=351  Identities=21%  Similarity=0.343  Sum_probs=281.9

Q ss_pred             CCcHHHHHHHHHHhcC-----------CCCCCCCCCCCcHHHHHHHHHHHhhcCC--CCCCCCCEEEcCChHHHHHHHHH
Q 038416           25 SDSTVAEDAVVDALRT-----------AHYNCYSPTLGVPSARRGIADYLNRDLP--YKLSPEDVYLTLGCSQAIEISLS   91 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~-----------~~~~~y~~~~~~~~lr~~ia~~~~~~~~--~~~~~~~i~~~~g~~~a~~~~~~   91 (387)
                      ...+.+.+.+++....           .+...|.+..|..+||+++|+++.+.++  .++++++|++|+|+++++..++.
T Consensus        59 l~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~  138 (447)
T PLN02607         59 VSFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTF  138 (447)
T ss_pred             hhHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHH
Confidence            3445566666664321           1234577778999999999999998776  35789999999999999999999


Q ss_pred             hhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc------CceEEEEeCCCCCccccC
Q 038416           92 VLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE------NTVAIVIINPGNPCGNVF  165 (387)
Q Consensus        92 ~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~  165 (387)
                      +++++||.|+++.|.|+++...+. ...|.+++++++..++++.++++.++++++.      ++++++++||+||||.++
T Consensus       139 ~l~~pGD~Vlv~~P~Y~~f~~~~~-~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~  217 (447)
T PLN02607        139 ILADPGDALLVPTPYYPGFDRDLR-WRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATV  217 (447)
T ss_pred             HhCCCCCEEEEcCCCCcchHHHHH-hcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCccc
Confidence            999999999999999999876554 0368899999887667788999999998753      678999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcccccc----C--C-CccEEEEecCcccccccccceEEEEeeCCC
Q 038416          166 SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF----G--S-IVPVITLGSISKRWIVPGWRLGWLVTSDPN  238 (387)
Q Consensus       166 ~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~----~--~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~  238 (387)
                      |.+++++|+++|+++++++|+||+|+++.|++.++.++..+    +  . .++++++.|+||.|+++|+|+||+++.+  
T Consensus       218 s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n--  295 (447)
T PLN02607        218 QRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYN--  295 (447)
T ss_pred             CHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcC--
Confidence            99999999999999999999999999988876555554332    1  1 4679999999999999999999999843  


Q ss_pred             CcccchhHHHHHHhhhhccCCcchHHHHHHHHHhhhcc--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEE
Q 038416          239 GILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETN--EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFV  316 (387)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~  316 (387)
                           +++...++.... ...++.+.|.++..+|++..  +.++.+..++++++++.+.+.|++. ++. +..+.+|+|+
T Consensus       296 -----~~l~~~~~~~~~-~~~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~-gi~-~~~~~ag~fv  367 (447)
T PLN02607        296 -----DKVVTTARRMSS-FTLVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRA-GIE-CLKGNAGLFC  367 (447)
T ss_pred             -----HHHHHHHHHHhh-cCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCC-cccCCeeEEE
Confidence                 246565654432 23567789999999998743  3667888899999999999999987 777 4478899999


Q ss_pred             EEecCcccc-cCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeC-ChHhHHHHHHHHHHHHHHhhhc
Q 038416          317 MVKLNVSML-EDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAA-EPATLEDGLERIKAFCQRHAKK  386 (387)
Q Consensus       317 ~~~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~-~~e~~~~~~~~l~~~~~~~~~~  386 (387)
                      |++++.... +......++..++++++||.+.||..|+.  ++||||+++. +++.+++++++|.+++++.+.+
T Consensus       368 w~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~~~~~~l~~gl~Ri~~~l~~~~~~  441 (447)
T PLN02607        368 WMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFANMSEDTLEVALKRIHRFMDRRKTA  441 (447)
T ss_pred             EEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHHHhh
Confidence            999864211 01112345666787888999999998865  6899999985 8999999999999999887754

>PRK08175 aminotransferase; Validated

Probab=100.00  E-value=1.3e-45  Score=344.07  Aligned_cols=353  Identities=18%  Similarity=0.303  Sum_probs=291.3

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCC-CEEEcCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~g~~~a~~   87 (387)
                      .+.+.+.|+|    +.+.++.+.+++.+.+.......|++..|..+||+++++|+.+.+++.++++ ++++|+|+++++.
T Consensus        30 ~~i~l~~g~p----~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~  105 (395)
T PRK08175         30 DIIDFSMGNP----DGPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLA  105 (395)
T ss_pred             CeEEcCCCCC----CCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHH
Confidence            3456667766    5666777888888877655557899989999999999999998888888877 7999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc---cCceEEEEeCCCCCcccc
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD---ENTVAIVIINPGNPCGNV  164 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~nptG~~  164 (387)
                      .++..++++||+|+++.|+|..+...+.  ..|.++..++++.+++   ..++++++++   ++++++++++|+||||..
T Consensus       106 ~~~~~~~~~gd~Vlv~~P~y~~~~~~~~--~~g~~~~~v~~~~~~~---~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~  180 (395)
T PRK08175        106 HLMLATLDHGDTVLVPNPSYPIHIYGAV--IAGAQVRSVPLVEGVD---FFNELERAIRESYPKPKMMILGFPSNPTAQC  180 (395)
T ss_pred             HHHHHhCCCCCEEEEcCCCCcchHHHHH--HcCCeEEEEecccCCC---cHHHHHHHHhhccCCceEEEEeCCCCCCCCC
Confidence            9999999999999999999999888888  8999999998865433   4677877765   468899999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEeeCCCCcccc
Q 038416          165 FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQN  243 (387)
Q Consensus       165 ~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~  243 (387)
                      ++.+++++|+++|+++|+++|+||+|.++.+++....++..+.. .+++++++||||.|+++|+|+||+++++       
T Consensus       181 ~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~~~-------  253 (395)
T PRK08175        181 VELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGNP-------  253 (395)
T ss_pred             CCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeCCH-------
Confidence            99999999999999999999999999998886654455444432 3567899999999999999999999865       


Q ss_pred             hhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCc
Q 038416          244 SGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNV  322 (387)
Q Consensus       244 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~  322 (387)
                       ++++++.+... ...+.+.+.|.++..++.. .+.++++..+.++++++.+.+.|+.+ ++. +..|.+|+|+|++++.
T Consensus       254 -~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~-~~~p~~g~~i~i~l~~  329 (395)
T PRK08175        254 -ELVSALARIKSYHDYGTFTPLQVAAIAALEG-DQQCVRDIAEQYKRRRDVLVKGLHEA-GWM-VEMPKASMYVWAKIPE  329 (395)
T ss_pred             -HHHHHHHHHHhhcccCCCcHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHc-CCc-ccCCCEEEEEEEECCc
Confidence             78888877654 3456667788888888864 35678888899999999999999988 676 4478899999999975


Q ss_pred             ccccCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHHHh
Q 038416          323 SMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       323 ~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      ... . .++.+++..+++++||.+.||..|+.  ++++||+++.+++.+.+++++|++++++.
T Consensus       330 ~~~-~-~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~~~~~~~~~al~~l~~~l~~~  390 (395)
T PRK08175        330 PYA-A-MGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMFRAD  390 (395)
T ss_pred             ccC-C-CCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence            210 0 13567777787888999999988864  46899999888899999999999998753

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=100.00  E-value=5.4e-45  Score=343.56  Aligned_cols=335  Identities=17%  Similarity=0.182  Sum_probs=276.6

Q ss_pred             ccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHH
Q 038416           10 RHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEIS   89 (387)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~   89 (387)
                      .++.+.|+|    +.+++|.+.+++.+....  ...|++..|..+||+.+++|+....+   .+++|++|+|+++++..+
T Consensus        87 ~i~L~~g~p----~~~~~p~~~~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~~~~~~~---~~~~Iiit~G~~~al~~~  157 (431)
T PRK15481         87 LHDLAGGNP----DPQRLPDLSRYFARLSRT--PRLYGDAPVSPELHAWAARWLRDDCP---VAFEIDLTSGAIDAIERL  157 (431)
T ss_pred             hhhhhcCCC----ChhHhHHHHHHHHHhhhh--hhhcCCcCCCHHHHHHHHHHHhhccC---CcCeEEEecCcHHHHHHH
Confidence            345556655    666667788888876543  34799888999999999999875322   356999999999999999


Q ss_pred             HHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEe-CCCCCccccCCHH
Q 038416           90 LSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVII-NPGNPCGNVFSYQ  168 (387)
Q Consensus        90 ~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~-~p~nptG~~~~~~  168 (387)
                      +.+++++||.|++++|+|+.+...++  ..|++++.++++.+   ++|++++++++++++++++++ +||||||.+++.+
T Consensus       158 ~~~l~~pgd~Vlv~~P~y~~~~~~~~--~~g~~~~~v~~~~~---g~~~~~l~~~~~~~~k~i~~~p~p~NPTG~~~s~~  232 (431)
T PRK15481        158 LCAHLLPGDSVAVEDPCFLSSINMLR--YAGFSASPVSVDAE---GMQPEKLERALAQGARAVILTPRAHNPTGCSLSAR  232 (431)
T ss_pred             HHHhCCCCCEEEEeCCCcHHHHHHHH--HcCCeEEeeccCCC---CCCHHHHHHHHhcCCCEEEECCCCCCCCCccCCHH
Confidence            99999999999999999999999999  99999999998532   479999999988788888887 9999999999999


Q ss_pred             HHHHHHHHHHhc-CcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          169 HLQKIARTARNL-GIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       169 ~~~~l~~~~~~~-~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      ++++|+++|+++ +++||+||+|.++.+.+. ...+. . ..+++++++||||.|+ +|+|+||+++++        +++
T Consensus       233 ~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~-~~~~~-~-~~~~vi~~~SfSK~~~-~GlRiG~~i~~~--------~~~  300 (431)
T PRK15481        233 RAAALRNLLARYPQVLVIIDDHFALLSSSPY-HSVIP-Q-TTQRWALIRSVSKALG-PDLRLAFVASDS--------ATS  300 (431)
T ss_pred             HHHHHHHHHHhcCCceEEecCchhhhccCCC-CCCCc-C-CCCCEEEEeeeccccC-CCceeEEEeCCH--------HHH
Confidence            999999999999 999999999999875432 12222 2 2358999999999998 999999999875        688


Q ss_pred             HHHHhhhh-ccCCcchHHHHHHHHHhhhcc-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccc
Q 038416          248 DSIKGCLN-AASHPVTFIQAAVPRIVDETN-EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML  325 (387)
Q Consensus       248 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~  325 (387)
                      +.+..... .....+.+.|.++..+|++.. +.++.+..+.++++++.+.+.|+++ ++. +..|.+|+|+|++++.   
T Consensus       301 ~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~-~~~-~~~p~gg~f~~~~l~~---  375 (431)
T PRK15481        301 ARLRLRLNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQY-GIA-IPSPGDGLNLWLPLDT---  375 (431)
T ss_pred             HHHHHHHhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHc-CCc-cccCCCeEEEEEECCC---
Confidence            88865543 335578899999999998744 4668888999999999999999987 676 4479999999999873   


Q ss_pred             cCCCcHHHHHHHHHHhcCeEEEcCCccCC---CCeEEEEeeC-ChHhHHHHHHHHHHHH
Q 038416          326 EDIGDDLEFCLKLAKEESVIILPGRTVGM---KNWLRIAFAA-EPATLEDGLERIKAFC  380 (387)
Q Consensus       326 ~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---~~~~Ri~~~~-~~e~~~~~~~~l~~~~  380 (387)
                          +..++...+ .++||.+.||..|+.   .+++||+++. +++++++++++|++++
T Consensus       376 ----~~~~~~~~l-~~~gV~v~pg~~f~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~~  429 (431)
T PRK15481        376 ----DSQATALTL-AKSGWLVREGEAFGVSAPSHGLRITLSTLNDAEINRLAADLHQAL  429 (431)
T ss_pred             ----CHHHHHHHH-HHCCcEEecCCccccCCCCCeEEEEcCCCChHHHHHHHHHHHHHh
Confidence                345666666 567999999998854   3689999974 7899999999998876

>PRK09275 aspartate aminotransferase; Provisional

Probab=100.00  E-value=9.8e-45  Score=340.24  Aligned_cols=359  Identities=19%  Similarity=0.248  Sum_probs=274.3

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHh-hcCCCCC-C--CCCEEEcCChHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLN-RDLPYKL-S--PEDVYLTLGCSQ   84 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~-~~~~~~~-~--~~~i~~~~g~~~   84 (387)
                      ..++.+.|.|    ++++|+.+.+++... ..   .+|+++.|..++|++|++++. +.++... .  .++|++|+|+++
T Consensus       101 ~~i~l~~g~p----~~~~~~~v~e~~~~~-~~---~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~  172 (527)
T PRK09275        101 DAVSYVRDQL----GFDADEFVYELVDGI-IG---DNYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTA  172 (527)
T ss_pred             HHHhhcCCCC----CCCCCHHHHHHHHHH-hc---CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHH
Confidence            3466778877    999999999955544 33   259999999999999999554 3333222 2  348999999999


Q ss_pred             HHHHHHHh-----hcCCCCeEEEcCCCCcchHHHhhccCCC--ceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCC
Q 038416           85 AIEISLSV-----LARPGANILIPRPGYPLYEIHAAGSNNN--LEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINP  157 (387)
Q Consensus        85 a~~~~~~~-----l~~~g~~vl~~~p~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p  157 (387)
                      ++..++.+     ++++||+|+++.|+|+.|...+.  ..|  ..++.++.+++++|.+|+++++++++++++++++++|
T Consensus       173 al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~--l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tkai~l~nP  250 (527)
T PRK09275        173 AMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPE--LPRYDLEVVHINADEENEWQYPDSELEKLRDPSIKALFLVNP  250 (527)
T ss_pred             HHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHH--HcCCCeEEEEeecCcccCCCCCHHHHHhhcCCCCCEEEEeCC
Confidence            99999886     68999999999999999998877  654  5556666556677999999999999999999999999


Q ss_pred             CCCccccCCHHHHHHHHHHHHh--cCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEee
Q 038416          158 GNPCGNVFSYQHLQKIARTARN--LGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTS  235 (387)
Q Consensus       158 ~nptG~~~~~~~~~~l~~~~~~--~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~  235 (387)
                      +||||.+++.+++++|+++|++  ++++||+||+|..+.+.   +.++... ..++++++.||||.|+++|+|+||++++
T Consensus       251 ~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~---~~s~~~~-~~~~~I~v~SfSK~f~mtG~RlG~i~~~  326 (527)
T PRK09275        251 SNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDD---FRSLFAV-LPYNTILVYSFSKYFGATGWRLGVIALH  326 (527)
T ss_pred             cCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhccc---ccCHHHh-CCCCEEEEeehhhhccCcHhHHhhhhcC
Confidence            9999999999999999999964  59999999999987642   2233222 2358999999999999999999999987


Q ss_pred             CCCCcc----------------------cch---hHHHHH----Hhh-hhccCCcchHHHHHHH-----HHhhhccHHHH
Q 038416          236 DPNGIL----------------------QNS---GFVDSI----KGC-LNAASHPVTFIQAAVP-----RIVDETNEAFF  280 (387)
Q Consensus       236 ~~~~~~----------------------~~~---~~~~~~----~~~-~~~~~~~~~~~~~~~~-----~~l~~~~~~~~  280 (387)
                      +.....                      .+|   .+++++    ++. .+.+.+.+.+.|.+++     +++. ..+.+.
T Consensus       327 ~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~all~-~~~~~~  405 (527)
T PRK09275        327 EDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALLD-EEDAYK  405 (527)
T ss_pred             chhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHh-CchHHH
Confidence            621000                      000   022222    222 2356677888888632     3344 345778


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccc-----------cCCCcHHHHHHHHHHhcCeEEEcC
Q 038416          281 AKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML-----------EDIGDDLEFCLKLAKEESVIILPG  349 (387)
Q Consensus       281 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------~~~~~~~~~~~~ll~~~gi~v~~g  349 (387)
                      ++..+.++++++.+.+.|. + .+. ...|.+++|+|++++....           ....++.+++..|+++.||.+.||
T Consensus       406 ~~~~~~~~~Rr~~l~~~Lg-~-~~~-~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~e~gV~v~PG  482 (527)
T PRK09275        406 KAMKDIIRRRYKALYEGLG-L-PEP-EDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAEETGVVLLPG  482 (527)
T ss_pred             HHHHHHHHHHHHHHHHHcC-C-CCc-CCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHHHHHhcCCEEEeCc
Confidence            8889999999998888772 2 222 2368999999998864211           011246789999999999999999


Q ss_pred             CccCC-CCeEEEEee-CChHhHHHHHHHHHHHHHHhhh
Q 038416          350 RTVGM-KNWLRIAFA-AEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       350 ~~~~~-~~~~Ri~~~-~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      ..|+. .+++|||++ .+++++.+++++|++.+.++..
T Consensus       483 ~~Fg~~~~~vRis~a~~~~~~~~~~~~rl~~~l~~y~~  520 (527)
T PRK09275        483 GGFGGPEWSVRVSLANLNEEDYAKIGKAIRKLLDEYYE  520 (527)
T ss_pred             hhhCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence            99985 568999998 5889999999999999988764

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=100.00  E-value=1.4e-44  Score=337.81  Aligned_cols=341  Identities=18%  Similarity=0.209  Sum_probs=271.4

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCC----CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTA----HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQ   84 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~----~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~   84 (387)
                      .+++.+.|.+    ++++++.+.+++.+.+.+.    ....|.+..|.++||+++++++.+.   .+++++|++|+|+++
T Consensus        34 ~~i~l~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~---~~~~d~I~it~Ga~~  106 (402)
T TIGR03542        34 DIIRLGIGDT----TQPLPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRG---RIDPEEIFISDGAKC  106 (402)
T ss_pred             CeEEcCCCCC----CCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhc---CCCHHHEEECCCcHH
Confidence            3566667665    7788999999999988652    2346877789999999999986432   378899999999999


Q ss_pred             HHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCc-----------eeeeeccCCCCCccCChhhHHHhhccCceEEE
Q 038416           85 AIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNL-----------EARHYDLLPEKRWEVDLDGVEALADENTVAIV  153 (387)
Q Consensus        85 a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~-----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~  153 (387)
                      ++..+. .++.+||+|+++.|+|..+...++  ..|.           ++..++++.++++..++++     .+++++++
T Consensus       107 al~~l~-~l~~~gd~Vlv~~P~y~~~~~~~~--~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~i~  178 (402)
T TIGR03542       107 DVFRLQ-SLFGSDNTVAVQDPVYPAYVDSNV--MAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPE-----EPKIDIIY  178 (402)
T ss_pred             HHHHHH-HhcCCCCEEEEeCCCCcchHHHHH--HcCCccccccccccceEEEeecchhhCCCCCccc-----cCCceEEE
Confidence            999865 556799999999999999999999  9999           8888887655556555432     14789999


Q ss_pred             EeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEE
Q 038416          154 IINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWL  232 (387)
Q Consensus       154 l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i  232 (387)
                      +++||||||.+++.+++++|+++|++++++||+||+|.++.+++..+.++..++. .+++++++||||.|+++|+|+||+
T Consensus       179 l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRiG~~  258 (402)
T TIGR03542       179 LCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGVRLGWT  258 (402)
T ss_pred             EeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCCcceEEE
Confidence            9999999999999999999999999999999999999998876543344444443 357899999999999999999999


Q ss_pred             EeeCCCCcccchhHH--------HHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 038416          233 VTSDPNGILQNSGFV--------DSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPC  303 (387)
Q Consensus       233 ~~~~~~~~~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  303 (387)
                      ++++        +++        ..+.... ....+++.+.|.++..++......++.+..+.++++++.+.+.|++. +
T Consensus       259 i~~~--------~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~  329 (402)
T TIGR03542       259 VVPK--------ELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEAA-G  329 (402)
T ss_pred             EecH--------HHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHhc-C
Confidence            9975        443        2222211 22335677889888888875444556677788899999999999887 6


Q ss_pred             CCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHH
Q 038416          304 ITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAF  379 (387)
Q Consensus       304 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~  379 (387)
                      +. +..|.+|+|+|++++..     .++.++...+++++||.+.||..|+.  .+++||+++.+++++.+++++|+++
T Consensus       330 ~~-~~~~~~~~f~~v~l~~~-----~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~  401 (402)
T TIGR03542       330 FK-VYGGEHAPYLWVKTPEG-----ISSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFGKRENIVEACERIKEA  401 (402)
T ss_pred             ce-ecCCCceeEEEEECCCC-----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHhh
Confidence            66 44667899999998742     24567888888888999999998865  4799999877899999999999875

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PRK06836 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3e-44  Score=334.59  Aligned_cols=353  Identities=23%  Similarity=0.404  Sum_probs=285.2

Q ss_pred             ccccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCC--CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChH
Q 038416            6 GQETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTA--HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCS   83 (387)
Q Consensus         6 g~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~   83 (387)
                      |.+.+++++.|+|    ++++++.+.+++.+.....  ....|++..|..++|+.+++++.+.++..+++++|++|+|++
T Consensus        31 ~~~~~~~l~~g~p----~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~  106 (394)
T PRK06836         31 GADNVFDFSLGNP----SVPPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAA  106 (394)
T ss_pred             CCCCeEEecCcCC----CCCCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChH
Confidence            4455667777765    6778899999999887642  245788888999999999999998888788899999999999


Q ss_pred             HHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccc
Q 038416           84 QAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGN  163 (387)
Q Consensus        84 ~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~  163 (387)
                      +++..++.+++++||.|+++.|+|..+...++  ..|.+++.++++++ ++.+|+++++++++++++++++++|+||||.
T Consensus       107 ~al~~~~~~l~~~gd~Vli~~p~~~~~~~~~~--~~g~~v~~v~~~~~-~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~  183 (394)
T PRK06836        107 GALNVALKAILNPGDEVIVFAPYFVEYRFYVD--NHGGKLVVVPTDTD-TFQPDLDALEAAITPKTKAVIINSPNNPTGV  183 (394)
T ss_pred             HHHHHHHHHhcCCCCEEEEcCCCCccHHHHHH--HcCCEEEEEecCCc-cCcCCHHHHHhhcCcCceEEEEeCCCCCCCc
Confidence            99999999999999999999999999999989  99999999998643 4689999999999889999999999999999


Q ss_pred             cCCHHHHHHHHHHHHh------cCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCC
Q 038416          164 VFSYQHLQKIARTARN------LGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDP  237 (387)
Q Consensus       164 ~~~~~~~~~l~~~~~~------~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~  237 (387)
                      ++|.+++++|+++|++      ||+++|+|++|.++.+++.....+..  ..+++++++|+||.|+++|+|+||+++++.
T Consensus       184 ~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~  261 (394)
T PRK06836        184 VYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFK--YYDNSIVVYSFSKSLSLPGERIGYIAVNPE  261 (394)
T ss_pred             CCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHH--ccCcEEEEecchhhccCcceeeEEEecCHH
Confidence            9999999999999999      89999999999998876543333322  235789999999999999999999998751


Q ss_pred             CCcccchhHHHHHHhhhh--ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEE
Q 038416          238 NGILQNSGFVDSIKGCLN--AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMF  315 (387)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~  315 (387)
                      .  .....+...+.....  .....+++.|.++..++++.      ...+.++++++.+.+.|+++ ++. +..|.+|+|
T Consensus       262 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~------~~~~~~~~~r~~l~~~L~~~-g~~-~~~~~gg~~  331 (394)
T PRK06836        262 M--EDADDLVAALVFANRILGFVNAPALMQRVVAKCLDAT------VDVSIYKRNRDLLYDGLTEL-GFE-CVKPQGAFY  331 (394)
T ss_pred             H--hhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHhC-CCE-eecCCceEE
Confidence            0  000001111111111  11356777899988888752      12456777888888999888 677 447888999


Q ss_pred             EEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          316 VMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      +|++++..      +..+++.. +.++||.+.||..|...+++||+++.+++++++++++|+++++++.
T Consensus       332 ~~~~~~~~------~~~~~~~~-l~~~gv~v~~g~~f~~~~~iRi~~~~~~~~~~~~i~~l~~~l~~~~  393 (394)
T PRK06836        332 LFPKSPEE------DDVAFCEK-AKKHNLLLVPGSGFGCPGYFRLSYCVDTETIERSLPAFEKLAKEYK  393 (394)
T ss_pred             EEEeCCCC------CHHHHHHH-HHhCCEEEECchhcCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhc
Confidence            99987641      45667654 4777999999998887889999999889999999999999998764

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=100.00  E-value=2.7e-45  Score=339.45  Aligned_cols=348  Identities=29%  Similarity=0.504  Sum_probs=290.6

Q ss_pred             ccCCCCCCCCCCCCCCCcHHHHHHHHH-HhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCC-CEEEcCChHHHHH
Q 038416           10 RHSPWPRRPLGVSLLSDSTVAEDAVVD-ALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIE   87 (387)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~v~~a~~~-~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~g~~~a~~   87 (387)
                      +++++.|++......+.++.+.+++.+ .........|++..|.++||+++++++++..+...+++ +|++++|+.+++.
T Consensus         3 ~I~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~   82 (363)
T PF00155_consen    3 VINLGSNAPLLLSQNPPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAALF   82 (363)
T ss_dssp             EEESSSSSTSSTTSSHHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHHH
T ss_pred             EEEEECCCCCCcccccchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccccchh
Confidence            456667666232222366666666665 33334567999999999999999999987677778888 9999999999999


Q ss_pred             HHHHhh-cCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc------CceEEEEeCCCCC
Q 038416           88 ISLSVL-ARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE------NTVAIVIINPGNP  160 (387)
Q Consensus        88 ~~~~~l-~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~np  160 (387)
                      .+...+ .++|++|+++.|+|+.+...++  ..|.+++.+++..++++.+|+++|++.+++      +++++++++|+||
T Consensus        83 ~~~~~~~~~~~~~vlv~~P~y~~~~~~~~--~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nP  160 (363)
T PF00155_consen   83 LLLRLLKINPGDTVLVPDPCYPSYIEAAR--LLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNP  160 (363)
T ss_dssp             HHHHHHHSSTTSEEEEEESSSTHHHHHHH--HTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTT
T ss_pred             hhhhcccccccccceecCCcccccccccc--ccCceeeeccccccccccccccccccccccccccccccceeeecccccc
Confidence            999999 7899999999999999999999  999999999987778889999999999877      5789999999999


Q ss_pred             ccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCCccEEEEecCcccccccccceEEEEeeCCCC
Q 038416          161 CGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNG  239 (387)
Q Consensus       161 tG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~  239 (387)
                      ||..+|.+++++|+++|+++|+++|+||+|+.+.++...+.+ ........+++++.|+||.|+++|+|+||+++++   
T Consensus       161 tG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~~~~---  237 (363)
T PF00155_consen  161 TGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIVAPP---  237 (363)
T ss_dssp             TTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEEEEH---
T ss_pred             cccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeeccccccccccccccccchh---
Confidence            999999999999999999999999999999999887553333 3444555569999999999999999999999975   


Q ss_pred             cccchhHHHHHHhhhhccCCcchHHHHHHHHHhhhccH--HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEE
Q 038416          240 ILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNE--AFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVM  317 (387)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~  317 (387)
                           ++++.++........ +.+.+.++..++.+...  .+++++.++++++++.+.+.|++. ++.+. .+.+|+++|
T Consensus       238 -----~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~  309 (363)
T PF00155_consen  238 -----ELIERLRRFQRSGLS-SSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI-GITVL-PPEAGFFLW  309 (363)
T ss_dssp             -----HHHHHHHHHHHHTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSEEE-HHSBSSEEE
T ss_pred             -----hhhhhhhhccccccc-cchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh-hhhee-eccCccEEE
Confidence                 788888877653333 77788888888876542  388999999999999999999988 88844 677999999


Q ss_pred             EecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe-eCChHhHHHHHHHH
Q 038416          318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF-AAEPATLEDGLERI  376 (387)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~-~~~~e~~~~~~~~l  376 (387)
                      +.++..      +..++.++|+++.||.+.||..|+.++++||++ +.+++++++++++|
T Consensus       310 ~~~~~~------~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~a~~~~e~~~~~~~~l  363 (363)
T PF00155_consen  310 VRLDPN------DAEELAQELLEEYGILVRPGSYFGVPGYIRISLASHSEEDLEEALERL  363 (363)
T ss_dssp             EEESHH------HHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEGGCSCHHHHHHHHHHH
T ss_pred             EEcccc------hHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEeccCCHHHHHHHHhhC
Confidence            988752      457888888887799999999999999999999 77999999999986

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=100.00  E-value=1.3e-44  Score=337.46  Aligned_cols=347  Identities=20%  Similarity=0.209  Sum_probs=270.4

Q ss_pred             cccCCCCCCCCCCCCCCC--cHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCE--EEcCChHH
Q 038416            9 TRHSPWPRRPLGVSLLSD--STVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDV--YLTLGCSQ   84 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~--~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i--~~~~g~~~   84 (387)
                      ..++++.|.|. .+++..  .+.+.+++.+.........|++..|.++||+++++|+.+..+..+++++|  ++|+|+++
T Consensus        27 ~~i~l~~g~~~-~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~  105 (396)
T PRK09257         27 DKVNLGVGVYK-DEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTG  105 (396)
T ss_pred             CcEecceeeEE-CCCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccH
Confidence            46788888652 223333  48899999888765445579999999999999999997655544578877  99999999


Q ss_pred             HHHHHHHhh--cCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc---cCceEEEEeCCCC
Q 038416           85 AIEISLSVL--ARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD---ENTVAIVIINPGN  159 (387)
Q Consensus        85 a~~~~~~~l--~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~n  159 (387)
                      |+..+++++  +++||+|++++|+|+.+...++  ..|.+++.+++...+++++|++.++++++   ++++++++++|||
T Consensus       106 al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~--~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~N  183 (396)
T PRK09257        106 ALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFE--AAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHN  183 (396)
T ss_pred             HHHHHHHHHHHhCCCCeEEECCCCcccHHHHHH--HcCCcEEEEeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCC
Confidence            999998776  4899999999999999999999  99999999997444457899999998875   3356667799999


Q ss_pred             CccccCCHHHHHHHHHHHHhcCcEEeecccccccccCC-CCCccccccCC-CccEEEEecCcccccccccceEEEEe--e
Q 038416          160 PCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS-TPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVT--S  235 (387)
Q Consensus       160 ptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~-~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~--~  235 (387)
                      |||.++|.+++++|+++|++|++++|+||+|.++.++. ....++..+.. .+++++++||||.|+++|+|+||+++  +
T Consensus       184 PTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRiG~~~~~~~  263 (396)
T PRK09257        184 PTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYGERVGALSVVAE  263 (396)
T ss_pred             CCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCccccccceeEEEEeC
Confidence            99999999999999999999999999999999987642 22333333332 35799999999999999999999984  2


Q ss_pred             CCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhcc-----HHHHHHHHHHHHHHHHHHHHHhhcCC---CCCC
Q 038416          236 DPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETN-----EAFFAKIIGLLKETADICYERIKEIP---CITC  306 (387)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~  306 (387)
                      ++....   .+..++..... ....++.+.|.++..++.+..     +.++++..+.++++++.+.+.|+++.   ++. 
T Consensus       264 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~L~~~~~~~~~~-  339 (396)
T PRK09257        264 DAEEAD---RVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEALKAKGPSRDFD-  339 (396)
T ss_pred             CHHHHH---HHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-
Confidence            211000   23333333322 334567888999988887642     35677788999999999999999862   355 


Q ss_pred             CCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee-CChHhHHHHHHHHHHHH
Q 038416          307 PVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA-AEPATLEDGLERIKAFC  380 (387)
Q Consensus       307 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~-~~~e~~~~~~~~l~~~~  380 (387)
                      +..|.+|+|+|++++          .+++.++++++||.+.|.      +  ||+++ .+++++++++++|++++
T Consensus       340 ~~~p~gg~~~w~~l~----------~~~~~~l~~~~~V~~~p~------~--ri~~~~~~~~~i~~~~~~i~~~~  396 (396)
T PRK09257        340 FIARQRGMFSYSGLT----------PEQVDRLREEFGVYAVGS------G--RINVAGLNESNIDYVAEAIAAVL  396 (396)
T ss_pred             cccccceEEEecCCC----------HHHHHHHHHcCCEEEcCC------C--eEEEeeCCHHHHHHHHHHHHhhC
Confidence            447899999998774          246677888999999883      2  99996 79999999999998753

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=1.7e-44  Score=331.74  Aligned_cols=331  Identities=18%  Similarity=0.246  Sum_probs=269.8

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      +..++++.+.+    ++++++.+++++.+.+...  ..|+. .|..+||+.+++++      ++++++|++|+|+++++.
T Consensus        29 ~~~i~l~~nen----~~~~~~~v~~a~~~~~~~~--~~Yp~-~g~~~Lr~aia~~~------~~~~~~I~vt~Gs~e~i~   95 (366)
T PRK01533         29 HSFVKLASNEN----PFGCSPRVLDELQKSWLDH--ALYPD-GGATTLRQTIANKL------HVKMEQVLCGSGLDEVIQ   95 (366)
T ss_pred             CceEEeCCCCC----CCCCCHHHHHHHHHHHHhc--CcCCC-CCHHHHHHHHHHHh------CCCcceEEECCCHHHHHH
Confidence            34556666555    7999999999999876542  35764 68899999999998      578999999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      .++.+++++||+|+++.|+|..|...+.  ..|.+++.++++   ++.+|+++++++++++++++++++||||||.+++.
T Consensus        96 ~~~~~l~~~gd~vlv~~P~y~~~~~~~~--~~g~~v~~v~~~---~~~~d~~~l~~~~~~~~~~v~i~~P~NPTG~~~~~  170 (366)
T PRK01533         96 IISRAVLKAGDNIVTAGATFPQYRHHAI--IEGCEVKEVALN---NGVYDLDEISSVVDNDTKIVWICNPNNPTGTYVND  170 (366)
T ss_pred             HHHHHhcCCCCEEEEcCCcHHHHHHHHH--HcCCEEEEeecC---CCCcCHHHHHHHhCcCCcEEEEeCCCCCCCCCcCH
Confidence            9999999999999999999999999999  999999999873   34689999999998889999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      +++++|+++|++++ ++|+||+|.++.+.+.....+..+...+++++++||||.|+++|+|+||+++++        +++
T Consensus       171 ~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~~--------~~~  241 (366)
T PRK01533        171 RKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHE--------ELI  241 (366)
T ss_pred             HHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCCH--------HHH
Confidence            99999999998866 577899999877654222223334445689999999999999999999999865        788


Q ss_pred             HHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccC
Q 038416          248 DSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLED  327 (387)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  327 (387)
                      +.+.+... ..+.+.++|.++..+|++  ..+.++..+...++++.+.+.++.+ ++. + .+..|+|+|++++      
T Consensus       242 ~~l~~~~~-~~~~~~~~q~aa~~~l~~--~~~~~~~~~~~~~~r~~~~~~l~~~-g~~-~-~~~~~nf~~~~~~------  309 (366)
T PRK01533        242 EKLNVVRL-PFNVSSLAQKAATIAFGD--DEFIEEIVRVNTEGLRQYESFCKEN-EIP-F-YQSQTNFIFLPVE------  309 (366)
T ss_pred             HHHHHhcC-CCCcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhC-CCc-c-CCCcCcEEEEeCC------
Confidence            88877653 467899999999999974  5677777888888888888888877 676 4 3456889999875      


Q ss_pred             CCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHHhhhc
Q 038416          328 IGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAKK  386 (387)
Q Consensus       328 ~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~~~  386 (387)
                        +..++...+ .++||.|.+   |  ++++||+++.. ++.+.+++.|+++++....|
T Consensus       310 --~~~~~~~~l-~~~GI~Vr~---~--~~~iRis~~~~-~~~~~l~~al~~~~~~~~~~  359 (366)
T PRK01533        310 --NGGEIYEAC-AHAGFIIRP---F--PNGVRITVGTR-EQNEGVISVLQQHFENKKRK  359 (366)
T ss_pred             --CHHHHHHHH-HHCCcEEcc---C--CCceEEeCCCH-HHHHHHHHHHHHHHHhcccc
Confidence              245666666 567999997   3  58899998653 66777888887777665543

>PRK06225 aspartate aminotransferase; Provisional

Probab=100.00  E-value=2.9e-43  Score=326.96  Aligned_cols=337  Identities=20%  Similarity=0.311  Sum_probs=277.4

Q ss_pred             CCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEE
Q 038416           23 LLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILI  102 (387)
Q Consensus        23 ~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~  102 (387)
                      .+++++.+.+++.+++.......|++..|..++|+.+++++      ++++++|++|+|+++++..++.+++++||+|++
T Consensus        39 ~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l------~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~  112 (380)
T PRK06225         39 HLGPHEEVREAMIRCIEEGEYCKYPPPEGFPELRELILKDL------GLDDDEALITAGATESLYLVMRAFLSPGDNAVT  112 (380)
T ss_pred             CCCCCHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhc------CCCCCcEEEeCCHHHHHHHHHHHhcCCCCEEEE
Confidence            67899999999999988655567888889999999999998      467889999999999999999999999999999


Q ss_pred             cCCCCcchHHHhhccCCCceeeeeccCC-CCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcC
Q 038416          103 PRPGYPLYEIHAAGSNNNLEARHYDLLP-EKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLG  181 (387)
Q Consensus       103 ~~p~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~  181 (387)
                      ++|+|..+...+.  ..|.+++.+++.. ++++.+|++.+++.++++++++++++|+||||.++|.+++++|+++|+++|
T Consensus       113 ~~p~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~  190 (380)
T PRK06225        113 PDPGYLIIDNFAS--RFGAEVIEVPIYSEECNYKLTPELVKENMDENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDND  190 (380)
T ss_pred             cCCCCcchHHHHH--HhCceEEeeccccccCCccCCHHHHHhhcCCCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCC
Confidence            9999998888888  8999999998743 345789999999999888999999999999999999999999999999999


Q ss_pred             cEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhhccCCcc
Q 038416          182 IIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPV  261 (387)
Q Consensus       182 ~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (387)
                      +++|+|++|.+|..+.   .+...+. .++++++.||||.|+++|+|+||+++++        ++++.++.......+.+
T Consensus       191 ~~ii~De~y~~~~~~~---~~~~~~~-~~~~i~~~s~SK~~g~~G~RiG~i~~~~--------~l~~~~~~~~~~~~~~~  258 (380)
T PRK06225        191 AFLLHDCTYRDFAREH---TLAAEYA-PEHTVTSYSFSKIFGMAGLRIGAVVATP--------DLIEVVKSIVINDLGTN  258 (380)
T ss_pred             cEEEEehhHHHHhccC---CchhhcC-CCCEEEEeechhhcCCccceeEEEecCH--------HHHHHHHHHHhcccCCC
Confidence            9999999998765322   1222222 2578999999999999999999999975        67877776543345667


Q ss_pred             hHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHh
Q 038416          262 TFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKE  341 (387)
Q Consensus       262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~  341 (387)
                      .+++.++...+.. ...++++..+.++++++.+.+.|++++++.+...|.+|+|+|+.++...    .+..++...+. +
T Consensus       259 ~~~~~~a~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~l~~~l~-~  332 (380)
T PRK06225        259 VIAQEAAIAGLKV-KDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISEAG----IDPEDLVEYLL-E  332 (380)
T ss_pred             HHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeEEEEEccccc----CCHHHHHHHHH-H
Confidence            7888888777764 3456667777777888888899988766543335677889999886421    14567777775 6


Q ss_pred             cCeEEEcCCccCC---CCeEEEEeeCChHhHHHHHHHHHHHHHHhhh
Q 038416          342 ESVIILPGRTVGM---KNWLRIAFAAEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       342 ~gi~v~~g~~~~~---~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      +||.+.||..|..   .+++|++++.+++++++++++|+++++..|.
T Consensus       333 ~gi~v~~g~~~~~~~~~~~iR~s~~~~~e~l~~~~~~l~~~~~~~~~  379 (380)
T PRK06225        333 RKIFVRQGTYTSKRFGDRYIRVSFSIPREQVEVFCEEFPDVVETLRT  379 (380)
T ss_pred             CCEEEcCCcccCcCCCCceEEEEeCCCHHHHHHHHHHHHHHHHHhhc
Confidence            7999999876543   4689999998899999999999999988774

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=7.6e-44  Score=328.09  Aligned_cols=326  Identities=19%  Similarity=0.304  Sum_probs=269.2

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      .+++++.|.+    ++++++.+.+++.+....  ...|+. .+..+||+++++++      ++++++|++|+|+++++..
T Consensus        31 ~~i~l~~~~~----~~~~~~~~~~~~~~~~~~--~~~Y~~-~~~~~lr~~ia~~~------~~~~~~I~it~G~~~al~~   97 (357)
T PRK14809         31 DLVKLSSNEN----PHGPSPAAVEAIREAAER--VHSYPK-ASHADLTAALADRW------DVSPEQVWLANGGDGALDY   97 (357)
T ss_pred             ceeEecCCCC----CCCCCHHHHHHHHHHHhh--hhcCCC-CCHHHHHHHHHHHh------CCCcceEEECCCHHHHHHH
Confidence            3566667655    788899999999887653  457875 68899999999998      5789999999999999999


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      ++++++++||.|++++|+|..+.....  ..|.++..+++..++++.++++++++.. ++++++++++||||||.++|.+
T Consensus        98 ~~~~~~~~gd~V~v~~P~y~~~~~~~~--~~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~k~i~l~~p~NPTG~~~s~~  174 (357)
T PRK14809         98 LARAMLDPGDTVLVPDPGFAYYGMSAR--YHHGEVREYPVSKADDFEQTADTVLDAY-DGERIVYLTSPHNPTGSEIPLD  174 (357)
T ss_pred             HHHHhcCCCCEEEEeCCChHHHHHHHH--HcCCeEEEEecccCcCCCcCHHHHHHhh-cCCcEEEEeCCCCCCCcCCCHH
Confidence            999999999999999999998888888  8899999998876667788888887765 3688999999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD  248 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~  248 (387)
                      ++++|+++|++ +++||+||+|.++.+.+.   .+......+++++++||||.|+++|+|+||+++++        ++++
T Consensus       175 ~~~~l~~~~~~-~~~iI~De~y~~~~~~~~---~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~--------~~~~  242 (357)
T PRK14809        175 EVEALAERTDE-ETLVVVDEAYGEFAERPS---AVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPE--------EWAD  242 (357)
T ss_pred             HHHHHHHhCcc-CcEEEEechhhhccCCch---hHHHHhhCCCEEEEecchhHhcCcchhheeeecCH--------HHHH
Confidence            99999999975 789999999999875431   22223345689999999999999999999999976        6888


Q ss_pred             HHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCC
Q 038416          249 SIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDI  328 (387)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  328 (387)
                      .+.+... ....+.+.+.++..++.+  +.++++..+.++++++.+.+.|+..     . .|.+|+|+|++++       
T Consensus       243 ~~~~~~~-~~~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~-----~-~~~~g~f~~~~~~-------  306 (357)
T PRK14809        243 AYARVNT-PFAASELACRAGLAALDD--DEHVERTVETARWAREYIREELDAP-----T-WESAGNFVLAEVG-------  306 (357)
T ss_pred             HHHHhCC-CCCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHhcCc-----c-CCCCCCEEEEECC-------
Confidence            8876543 456778888888888864  5778888888888888888888643     2 3567889998874       


Q ss_pred             CcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHH
Q 038416          329 GDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       329 ~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~  381 (387)
                       +..++...+ +++||.+.||..|+.++++||+++. .+++++++++|+++++
T Consensus       307 -~~~~~~~~l-~~~gv~v~~g~~f~~~~~iRls~~~-~~~~~~~l~~L~~~l~  356 (357)
T PRK14809        307 -DASAVAEAA-QERGVIVRDCTSFGLPECIRITCGT-REETERAVEVLNEVLA  356 (357)
T ss_pred             -CHHHHHHHH-HHCCEEEEECccCCCCCeEEEecCC-HHHHHHHHHHHHHHhc
Confidence             345676665 6779999999999878999999874 6899999999998875

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=100.00  E-value=1.9e-43  Score=326.27  Aligned_cols=329  Identities=21%  Similarity=0.326  Sum_probs=267.5

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCC-CCCCCEEEcCChHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYK-LSPEDVYLTLGCSQAI   86 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~-~~~~~i~~~~g~~~a~   86 (387)
                      +..++++.|+|    +.+.++.+.+++.+....   .+|++..|..++|+.+++|+.+.+++. +++++|++|+|+++++
T Consensus        27 ~~~i~l~~~~p----~~~~~~~~~~~~~~~~~~---~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i   99 (364)
T PRK07865         27 DGIVDLSVGTP----VDPVPPVIQEALAAAADA---PGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELV   99 (364)
T ss_pred             CCEEEcCCCCC----CCCCCHHHHHHHHHHHhh---CCCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHH
Confidence            34567777766    567788999998876532   379888899999999999999888876 8899999999999999


Q ss_pred             HHHHHhh-cCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccC
Q 038416           87 EISLSVL-ARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVF  165 (387)
Q Consensus        87 ~~~~~~l-~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~  165 (387)
                      ..++..+ +++||.|+++.|+|..+...++  ..|.++..++.         +++++   .++++++++++|+||||.++
T Consensus       100 ~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~--~~g~~~~~~~~---------~~~l~---~~~~~~v~~~~p~NPtG~~~  165 (364)
T PRK07865        100 AWLPTLLGLGPGDVVVIPELAYPTYEVGAR--LAGATVVRADS---------LTELG---PQRPALIWLNSPSNPTGRVL  165 (364)
T ss_pred             HHHHHHHcCCCCCEEEECCCCcccHHHHHH--hcCCEEEecCC---------hhhCC---cccceEEEEcCCCCCCCccC
Confidence            9988888 7999999999999999999999  89998887641         22222   25789999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcccccc---CCCccEEEEecCcccccccccceEEEEeeCCCCccc
Q 038416          166 SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF---GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQ  242 (387)
Q Consensus       166 ~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~  242 (387)
                      +.+++++|+++|+++|+++|+||+|.++.+++.....+...   ...+++++++||||.|+++|+|+||+++++      
T Consensus       166 ~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~~------  239 (364)
T PRK07865        166 GVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAGDP------  239 (364)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCceeeEEEecCH------
Confidence            99999999999999999999999999988765322222110   123579999999999999999999999865      


Q ss_pred             chhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecC
Q 038416          243 NSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLN  321 (387)
Q Consensus       243 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~  321 (387)
                        ++++.++.... .....+.+.|.++..++.+  +.++++..+.++++++.+.+.|+++ ++. +..|.+|+|+|+.++
T Consensus       240 --~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~~~~~~~~~~  313 (364)
T PRK07865        240 --ALVAELLEVRKHAGMMVPAPVQAAMVAALGD--DAHVREQRERYARRRAVLRPALEAA-GFR-VDHSEAGLYLWATRG  313 (364)
T ss_pred             --HHHHHHHHHHHhcCCCcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHc-CCc-ccCCCccEEEEEeCC
Confidence              78888876543 3456788899998888875  5667788889999999999999987 677 447888999998874


Q ss_pred             cccccCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHH
Q 038416          322 VSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIK  377 (387)
Q Consensus       322 ~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~  377 (387)
                      .       +..++... +.++||.+.||..|+.  ++++||+++.+++++++++++|+
T Consensus       314 ~-------~~~~~~~~-l~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~~~~~~~~l~  363 (364)
T PRK07865        314 E-------DCWDTVAW-LAERGILVAPGDFYGPAGAQHVRVALTATDERIAAAVERLA  363 (364)
T ss_pred             C-------CHHHHHHH-HHHCCEEEeCccccCcCCCCEEEEEecCCHHHHHHHHHHhh
Confidence            2       34455554 4678999999988763  57999999878999999999885

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=2.1e-43  Score=326.69  Aligned_cols=336  Identities=18%  Similarity=0.281  Sum_probs=266.8

Q ss_pred             ccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCC-CCCCCCCCCcHHHHHHHHHHHhhcC--CCCCCCCCEEEcCChHHHH
Q 038416           10 RHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAH-YNCYSPTLGVPSARRGIADYLNRDL--PYKLSPEDVYLTLGCSQAI   86 (387)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~y~~~~~~~~lr~~ia~~~~~~~--~~~~~~~~i~~~~g~~~a~   86 (387)
                      ..+...|.+    ++++|+.+.+++.+.+.... ...|+. .|..+||+++++|+++.+  +..+++++|++|+|+++++
T Consensus        30 ~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al  104 (374)
T PRK02610         30 LDRLDTNEF----PYDLPPDLKQKLAWLYQQGIESNRYPD-GGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELI  104 (374)
T ss_pred             eeEecCCCC----CCCCCHHHHHHHHHHHhhcccccCCCC-CchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHH
Confidence            344555444    78999999999999876532 346865 689999999999998766  4568899999999999999


Q ss_pred             HHHHHhhcCCCC-eEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc----cCceEEEEeCCCCCc
Q 038416           87 EISLSVLARPGA-NILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD----ENTVAIVIINPGNPC  161 (387)
Q Consensus        87 ~~~~~~l~~~g~-~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~v~l~~p~npt  161 (387)
                      ..++.+++.+|| +|+++.|+|..+...++  ..|.+++.++++ ++++++|+++++++++    ++++++++++|||||
T Consensus       105 ~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~--~~g~~~~~~~~~-~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPT  181 (374)
T PRK02610        105 RSLLIATCLGGEGSILVAEPTFSMYGILAQ--TLGIPVVRVGRD-PETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPT  181 (374)
T ss_pred             HHHHHHHcCCCCCeEEEcCCChHHHHHHHH--HcCCEEEEecCC-cccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCC
Confidence            988888777785 89999999999999999  999999999875 3458899999999886    478999999999999


Q ss_pred             cccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcc
Q 038416          162 GNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGIL  241 (387)
Q Consensus       162 G~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~  241 (387)
                      |..++.+++++++++|  ++++||+||+|.+|.+.  .  .+..+....++++++||||.|+++|+|+||+++++     
T Consensus       182 G~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~--~--~~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~v~~~-----  250 (374)
T PRK02610        182 GNPLTAAELEWLRSLP--EDILVVIDEAYFEFSQT--T--LVGELAQHPNWVILRTFSKAFRLAAHRVGYAIGHP-----  250 (374)
T ss_pred             CCCCCHHHHHHHHhcc--CCcEEEEeccccccCcc--c--hHHHHhcCCCEEEEEecchhccCcccceeeeecCH-----
Confidence            9999999999999887  38999999999987532  1  12223334568899999999999999999999865     


Q ss_pred             cchhHHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecC
Q 038416          242 QNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLN  321 (387)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~  321 (387)
                         ++++.+.+... ..+.+.+.|.++..++++ .+.+.+...+. .+.++.+.+.|+.++++. + .|.+|+|+|++++
T Consensus       251 ---~l~~~l~~~~~-~~~~~~~~q~a~~~~l~~-~~~~~~~~~~~-~~~r~~l~~~L~~~~~~~-~-~p~~g~f~~~~l~  322 (374)
T PRK02610        251 ---ELIAVLEKVRL-PYNLPSFSQLAAQLALEH-RQELLAAIPEI-LQERDRLYQALQELPQLR-V-WPSAANFLYLRLS  322 (374)
T ss_pred             ---HHHHHHHHhcC-CCCCCHHHHHHHHHHhcC-HHHHHHHHHHH-HHHHHHHHHHHHhCCCcE-e-CCCcceEEEEeCC
Confidence               68888877653 355678899998888874 34444444444 445677888888887776 4 5888999999986


Q ss_pred             cccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          322 VSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       322 ~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      ..     .+..++...+ .++||.+.++     .+++||+++. .+++++++++|+++++++.
T Consensus       323 ~~-----~~~~~~~~~l-~~~gi~v~~~-----~~~lRls~~~-~~~~~~~l~~l~~~l~~~~  373 (374)
T PRK02610        323 QD-----AALAALHQAL-KAQGTLVRHT-----GGGLRITIGT-PEENQRTLERLQAALTQLE  373 (374)
T ss_pred             CC-----CCHHHHHHHH-HHCCEEEEeC-----CCeEEEeCCC-HHHHHHHHHHHHHHHhhcC
Confidence            42     1455666665 6779999764     4789999985 4668999999999887653

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=9e-44  Score=328.17  Aligned_cols=329  Identities=20%  Similarity=0.273  Sum_probs=270.0

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      ..++++.+.+    .+++++.+.+++.+.+..  . .|.+..+..++|+++++++      ++++++|++|+|+++++..
T Consensus        30 ~~i~l~~n~~----~~~~~~~v~~a~~~~~~~--~-~~~p~~g~~~lr~~ia~~~------~~~~~~i~~t~G~~~~l~~   96 (359)
T PRK03158         30 KIVKLASNEN----PYGPSPKVKEAIAAHLDE--L-ALYPDGYAPELRTKVAKHL------GVDEEQLLFGAGLDEVIQM   96 (359)
T ss_pred             ceEEecCCCC----CCCCCHHHHHHHHHHHHH--h-hcCCCCcHHHHHHHHHHHh------CCCHHHEEECCCHHHHHHH
Confidence            3445555444    577899999999988764  2 3444468899999999999      4678999999999999999


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      ++++++++||+|+++.|+|+.+...+.  ..|.++..+++.   ++.+|++++++.++++++++++++|+||||.++|.+
T Consensus        97 ~~~~~~~~gd~v~~~~p~y~~~~~~~~--~~g~~~~~~~~~---~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~  171 (359)
T PRK03158         97 ISRALLNPGTNTVMAEPTFSQYRHNAI--IEGAEVREVPLK---DGGHDLEAMLKAIDEQTKIVWICNPNNPTGTYVNHE  171 (359)
T ss_pred             HHHHHhCCCCEEEEcCCCHHHHHHHHH--HcCCeEEEEecC---CCCcCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHH
Confidence            999999999999999999999998888  899999999885   357899999998888899999999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD  248 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~  248 (387)
                      ++.++++.|+ +|+++|+||+|.++.+.+.....+...+..+++++++||||.|+++|+|+||+++++        ++++
T Consensus       172 ~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~--------~~~~  242 (359)
T PRK03158        172 ELLSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASE--------ELIE  242 (359)
T ss_pred             HHHHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCCH--------HHHH
Confidence            9999998874 699999999999988765333333333444679999999999999999999999875        7888


Q ss_pred             HHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCC
Q 038416          249 SIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDI  328 (387)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  328 (387)
                      .+..... ....+.++|.++..++++  ..++++..+.++++++.+.+.|+++ ++. + .|.+|+|+|++++.      
T Consensus       243 ~~~~~~~-~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~-~~~~g~~i~~~~~~------  310 (359)
T PRK03158        243 KLNIARP-PFNTTRIAQYAAIAALED--QAFLKECVEKNAEGLEQYYAFCKEY-GLF-Y-YPSQTNFIFVDTGR------  310 (359)
T ss_pred             HHHHhcC-CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHC-CCe-e-CCCcCcEEEEECCC------
Confidence            8877654 356788999999999874  4667777788888888998999887 666 4 46668899988752      


Q ss_pred             CcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHH
Q 038416          329 GDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAF  379 (387)
Q Consensus       329 ~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~  379 (387)
                       +..++...++ ++||.+.||..|+.++++||+++ ++++.+.+++.|+++
T Consensus       311 -~~~~~~~~l~-~~gv~v~~g~~f~~~~~iRi~~~-~~~~~~~l~~al~~~  358 (359)
T PRK03158        311 -DANELFEALL-KKGYIVRSGAALGFPTGVRITIG-LKEQNDKIIELLKEL  358 (359)
T ss_pred             -CHHHHHHHHH-HCCeEEeeCCCCCCCCeEEEecC-CHHHHHHHHHHHHHh
Confidence             4567777775 56999999999987889999987 567788888887664

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=100.00  E-value=4.6e-43  Score=328.54  Aligned_cols=359  Identities=18%  Similarity=0.247  Sum_probs=266.7

Q ss_pred             ccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHH-HHHhhcCCCCC-CCC--CEEEcCChHHH
Q 038416           10 RHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIA-DYLNRDLPYKL-SPE--DVYLTLGCSQA   85 (387)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia-~~~~~~~~~~~-~~~--~i~~~~g~~~a   85 (387)
                      .++.+.|+|    ++++++.+ +++.+.+...   +|+.+.+..+++++++ +|+.+.++... .++  +|++|+|+++|
T Consensus        96 ~i~l~~g~p----~~~~~~~~-~~~~~~~~~~---~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~a  167 (521)
T TIGR03801        96 IISYVIDQL----GFDPDAFL-YEMCDGIIGD---NYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAA  167 (521)
T ss_pred             HHhhcCCCC----CCCCCHHH-HHHHHHhhcC---CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHH
Confidence            456777777    78866555 5555554332   5876667777777777 57666554332 333  89999999999


Q ss_pred             HHHHHHh-----hcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCC-----ccCChhhHHHhhccCceEEEEe
Q 038416           86 IEISLSV-----LARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKR-----WEVDLDGVEALADENTVAIVII  155 (387)
Q Consensus        86 ~~~~~~~-----l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~v~l~  155 (387)
                      +..++.+     ++++||+|+++.|+|+.|...+.....|.+++.++..++++     |.+|++++++++++++++++++
T Consensus       168 l~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~~kai~l~  247 (521)
T TIGR03801       168 MCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPSIKALFVV  247 (521)
T ss_pred             HHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcCCCCcEEEEe
Confidence            9999887     68999999999999999998877113467777777754433     8899999999888899999999


Q ss_pred             CCCCCccccCCHHHHHHHHHHHHhc--CcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEE
Q 038416          156 NPGNPCGNVFSYQHLQKIARTARNL--GIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLV  233 (387)
Q Consensus       156 ~p~nptG~~~~~~~~~~l~~~~~~~--~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~  233 (387)
                      +|+||||.+++.+++++|+++|+++  +++||+||+|..|.+   .+.++... ..++++++.||||.|+++|+|+||++
T Consensus       248 nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~sl~~~-~~~~vI~v~SfSK~fg~~G~RlG~i~  323 (521)
T TIGR03801       248 NPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD---DFRSLFAE-LPYNTIGVYSFSKYFGATGWRLGTIA  323 (521)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc---cccchhhh-CCCCEEEEEcchhhccCchhhhhhhh
Confidence            9999999999999999999999986  899999999998764   22333333 23589999999999999999999999


Q ss_pred             eeCCCCcc-----------------------cch---hHHHHH----Hhhh-hccCCcchHHHH-----HHHHHhhhccH
Q 038416          234 TSDPNGIL-----------------------QNS---GFVDSI----KGCL-NAASHPVTFIQA-----AVPRIVDETNE  277 (387)
Q Consensus       234 ~~~~~~~~-----------------------~~~---~~~~~~----~~~~-~~~~~~~~~~~~-----~~~~~l~~~~~  277 (387)
                      +++.. ++                       .+|   .+++++    ++.. +.+.+.+.+.|.     ++.+++. ..+
T Consensus       324 ~~~~~-v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~~all~-~~~  401 (521)
T TIGR03801       324 LHKDN-IFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALMD-KEN  401 (521)
T ss_pred             cCchH-HHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhc-cch
Confidence            87521 00                       000   012222    2221 244556677766     2334443 346


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccccc-----------CCCcHHHHHHHHHHhcCeEE
Q 038416          278 AFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE-----------DIGDDLEFCLKLAKEESVII  346 (387)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~~~~~ll~~~gi~v  346 (387)
                      .+.++..+.++++++.+.+.| .+ .+. ...|.+++|+|++++.....           ...++.+++.+|+++.||.+
T Consensus       402 ~y~~~~~~~~~~R~~~l~~~L-g~-~~~-~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~~L~~e~gV~v  478 (521)
T TIGR03801       402 AYKAETKDICRRREKLLFRGL-GL-PLQ-EDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLFRLAEETGIVL  478 (521)
T ss_pred             hHHHHHHHHHHHHHHHHHHhc-CC-CCc-CCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHHHHHHHHhCCEEE
Confidence            788888999999999988887 22 122 23688899999998742110           01146789999999999999


Q ss_pred             EcCCccCC-CCeEEEEee-CChHhHHHHHHHHHHHHHHhhh
Q 038416          347 LPGRTVGM-KNWLRIAFA-AEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       347 ~~g~~~~~-~~~~Ri~~~-~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      .||..|+. .+++|||++ .+++++.++.++|++.++++..
T Consensus       479 ~PG~~Fg~~~~~vRisla~l~~~~~~~~~~rl~~~~~~~~~  519 (521)
T TIGR03801       479 LPGGGFGGPEWSVRVSLANLNEYDYAEIGRAIRKILDEYYE  519 (521)
T ss_pred             eCchhcCCCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999986 457999997 5889999999999999987654

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PTZ00376 aspartate aminotransferase; Provisional

Probab=100.00  E-value=2.3e-43  Score=329.54  Aligned_cols=344  Identities=17%  Similarity=0.190  Sum_probs=263.5

Q ss_pred             cccCCCCCCCC-CCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEE--EcCChHHH
Q 038416            9 TRHSPWPRRPL-GVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVY--LTLGCSQA   85 (387)
Q Consensus         9 ~~~~~~~~~~~-~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~--~~~g~~~a   85 (387)
                      ..++.+.|.|. ..++....+.+.+++.+........+|++..|.++||+++++|+....+..+++++|+  .|.|++++
T Consensus        30 ~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~a  109 (404)
T PTZ00376         30 SKVNLGIGAYRDENGKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGA  109 (404)
T ss_pred             ccEecccceeECCCCCEehhhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcchH
Confidence            45788888741 1111122334444444433333446899999999999999999976554556888998  48899999


Q ss_pred             HHHHHH---hhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc---cCceEEEEeCCCC
Q 038416           86 IEISLS---VLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD---ENTVAIVIINPGN  159 (387)
Q Consensus        86 ~~~~~~---~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~n  159 (387)
                      +..++.   +++++||+|++++|+|+.|...++  ..|.+++.+++.+++++++|++.+++++.   ++++++++++|||
T Consensus       110 l~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~--~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~N  187 (404)
T PTZ00376        110 LRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFK--SAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHN  187 (404)
T ss_pred             HHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH--HcCCceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCC
Confidence            988875   567999999999999999999999  99999999998555568999999999884   3467778899999


Q ss_pred             CccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCC--CCccccccC-CCccEEEEecCcccccccccceEEEE---
Q 038416          160 PCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGST--PYVPMGVFG-SIVPVITLGSISKRWIVPGWRLGWLV---  233 (387)
Q Consensus       160 ptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~--~~~~~~~~~-~~~~~~~i~s~sK~~~~~g~r~G~i~---  233 (387)
                      |||.+++.+++++|+++|++|+++||+||+|.++.+++.  ...++..+. ..+++++++||||.|+++|+|+||++   
T Consensus       188 PTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRvG~~~~~~  267 (404)
T PTZ00376        188 PTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIGALHIVC  267 (404)
T ss_pred             CCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccccceEEEEe
Confidence            999999999999999999999999999999999887541  122232222 22479999999999999999999984   


Q ss_pred             eeCCCCcccchhHHHHH----Hhhhh-ccCCcchHHHHHHHHHhhhcc--H---HHHHHHHHHHHHHHHHHHHHhhcCC-
Q 038416          234 TSDPNGILQNSGFVDSI----KGCLN-AASHPVTFIQAAVPRIVDETN--E---AFFAKIIGLLKETADICYERIKEIP-  302 (387)
Q Consensus       234 ~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~l~~~~--~---~~~~~~~~~~~~~~~~~~~~l~~~~-  302 (387)
                      +++        ++++.+    .+... ...+++.+.|.++..++++..  +   ..+.+..++++++++.+.+.|++++ 
T Consensus       268 ~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~  339 (404)
T PTZ00376        268 ANK--------EEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGS  339 (404)
T ss_pred             CCH--------HHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            332        444433    33222 234456789999999887632  2   2355666788999999999999862 


Q ss_pred             --CCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee-CChHhHHHHHHHHHHH
Q 038416          303 --CITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA-AEPATLEDGLERIKAF  379 (387)
Q Consensus       303 --~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~-~~~e~~~~~~~~l~~~  379 (387)
                        ++. ...|.+|+|+|++++          .+++..|++++||.+.||.        ||+++ .+++++++++++|+++
T Consensus       340 ~~~~~-~~~p~gg~f~~~~~~----------~~~~~~L~~~~~v~v~p~~--------Ris~~~~~~~~~~~~~~~l~~~  400 (404)
T PTZ00376        340 PGDWE-HIINQIGMFSFTGLT----------KEQVERLIEKYHIYLLDNG--------RISVAGLTSKNVDYVAEAIHDV  400 (404)
T ss_pred             CCccc-ccccCceEEEecCCC----------HHHHHHHHHhCCEeecCCC--------eEEEeccCHHhHHHHHHHHHHH
Confidence              244 336899999998764          3678888888899999971        99996 8999999999999988


Q ss_pred             HH
Q 038416          380 CQ  381 (387)
Q Consensus       380 ~~  381 (387)
                      +.
T Consensus       401 ~~  402 (404)
T PTZ00376        401 VR  402 (404)
T ss_pred             Hh
Confidence            65

>PLN02672 methionine S-methyltransferase

Probab=100.00  E-value=4.8e-43  Score=347.43  Aligned_cols=352  Identities=15%  Similarity=0.233  Sum_probs=280.9

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCC-CCEEEcCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSP-EDVYLTLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~-~~i~~~~g~~~a~~   87 (387)
                      .+++.+.|.+    ++++|+.+.+++.+.+...   .+  ..+++++|+++++|+.+++|...++ ++|++++|+++++.
T Consensus       698 ~vI~LsinE~----d~ppPp~V~eAi~eal~~~---~~--s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~  768 (1082)
T PLN02672        698 SLIHMDVDES----FLPVPSAVKASIFESFVRQ---NI--SESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFN  768 (1082)
T ss_pred             CEEEEeCCCC----CCCCCHHHHHHHHHHHhhc---CC--CCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHH
Confidence            4566667666    8999999999999887542   22  2356788999999999988877754 58999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc-CceEEEEeCCC-CCccccC
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPG-NPCGNVF  165 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~-nptG~~~  165 (387)
                      .++.+++++||.|+++.|+|+.|...++  ..|.+++.+++.++++|.+|++.+++++++ +++.+++++|+ ||||.++
T Consensus       769 lll~aLl~pGD~VLVp~PtY~~Y~~~a~--~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~  846 (1082)
T PLN02672        769 KLVLCCVQEGGTLCFPAGSNGTYVSAAK--FLKANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLLY  846 (1082)
T ss_pred             HHHHHHcCCCCEEEEeCCChHHHHHHHH--HcCCEEEEEecccccCCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccC
Confidence            9999999999999999999999999999  999999999997667899999999999876 45689999997 9999999


Q ss_pred             CHHHHHHHHHHHHhcCcEEeecccccccccCCCCC--cccc----ccCC---CccEEEEecCcccccccccceEEEEeeC
Q 038416          166 SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPY--VPMG----VFGS---IVPVITLGSISKRWIVPGWRLGWLVTSD  236 (387)
Q Consensus       166 ~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~--~~~~----~~~~---~~~~~~i~s~sK~~~~~g~r~G~i~~~~  236 (387)
                      +.+++++|+++|++||++||+||+|+++.|.+...  .++.    .++.   ..++++++||||.|+++|+|+||+++++
T Consensus       847 S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~  926 (1082)
T PLN02672        847 SNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEFGFLALND  926 (1082)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHheeEEeCC
Confidence            99999999999999999999999999988876431  1111    1211   2378999999999999999999999865


Q ss_pred             CCCcccchhHHHHHHhhhhccCCcchHHHHHHHHHhh---h-cc--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 038416          237 PNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVD---E-TN--EAFFAKIIGLLKETADICYERIKEIPCITCPVKP  310 (387)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~-~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  310 (387)
                             +++++.+..... ...+....+.++..++.   . ..  ..++.+..+.++++++++.+.|+++ ++. +..|
T Consensus       927 -------~eLi~~l~~~~~-~s~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~-Gi~-v~~P  996 (1082)
T PLN02672        927 -------SVLIDAFHSAPG-LSRPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEAC-GWD-VLEP  996 (1082)
T ss_pred             -------HHHHHHHHHhhh-hcCCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCe-EecC
Confidence                   247888876533 12223334444444332   1 11  3456777888999999999999998 787 5589


Q ss_pred             CceEEEEEecCccc-------ccC-----CCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHH
Q 038416          311 QGAMFVMVKLNVSM-------LED-----IGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKA  378 (387)
Q Consensus       311 ~~g~~~~~~~~~~~-------~~~-----~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~  378 (387)
                      ++|+++|++++...       .++     ..++.++...++++.||.+.||..|+.++++||+++.+++++++++++|++
T Consensus       997 eGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g~~RIsfa~~~e~LeeALerL~k 1076 (1082)
T PLN02672        997 QGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPGYCRFSFALEDSEFDRALKAIAR 1076 (1082)
T ss_pred             CcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCCCCeEEEEecCCHHHHHHHHHHHHH
Confidence            99999999764210       000     124678888898888999999998888899999999999999999999988


Q ss_pred             HHH
Q 038416          379 FCQ  381 (387)
Q Consensus       379 ~~~  381 (387)
                      .+.
T Consensus      1077 f~~ 1079 (1082)
T PLN02672       1077 FKE 1079 (1082)
T ss_pred             HHH
Confidence            654

>PLN02368 alanine transaminase

Probab=100.00  E-value=9.3e-44  Score=328.96  Aligned_cols=289  Identities=23%  Similarity=0.400  Sum_probs=240.2

Q ss_pred             CcHHHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc-CCCCeEEEc
Q 038416           26 DSTVAEDAVVDALR-TAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA-RPGANILIP  103 (387)
Q Consensus        26 ~~~~v~~a~~~~~~-~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~g~~vl~~  103 (387)
                      +++.+.++++.... .....+|++..|..+||++|++|+.+++|..+++++|++|+|+++++..++.+++ ++||.|+++
T Consensus        82 p~~~i~~a~~~l~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~  161 (407)
T PLN02368         82 PADAIARAKHYLSLTSGGLGAYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVP  161 (407)
T ss_pred             CHHHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEe
Confidence            66777777655332 2235689998999999999999999888888899999999999999999999987 799999999


Q ss_pred             CCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc------CceEEEEeCCCCCccccCCHHHHHHHHHHH
Q 038416          104 RPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE------NTVAIVIINPGNPCGNVFSYQHLQKIARTA  177 (387)
Q Consensus       104 ~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~~~~l~~~~  177 (387)
                      .|+|+.|...+.  ..|.+++.+++..+++|.+|++++++++++      +++++++++||||||.+++.+++++|+++|
T Consensus       162 ~P~Y~~y~~~~~--~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a  239 (407)
T PLN02368        162 VPQYPLYSATIS--LLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFC  239 (407)
T ss_pred             CCCCccHHHHHH--HcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHH
Confidence            999999999999  999999999988777899999999998864      688999999999999999999999999999


Q ss_pred             HhcCcEEeecccccccccCCC-CCccccc----cC----CCccEEEEecCcccc-cccccceEEEEeeCCCCcccchhHH
Q 038416          178 RNLGIIVIADEVYNHLAFGST-PYVPMGV----FG----SIVPVITLGSISKRW-IVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       178 ~~~~~~li~D~~~~~~~~~~~-~~~~~~~----~~----~~~~~~~i~s~sK~~-~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      ++||++||+||+|.++.|++. .+.++..    +.    ..+++++++||||.| +++|+|+||+++.+.     +++++
T Consensus       240 ~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~-----~~~li  314 (407)
T PLN02368        240 YQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNI-----PPKTV  314 (407)
T ss_pred             HHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCC-----CHHHH
Confidence            999999999999999998764 3334322    21    234899999999998 799999999995210     12688


Q ss_pred             HHHHhhhhccCCcchHHHHHHHHHhhhcc------HHHH---HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEE
Q 038416          248 DSIKGCLNAASHPVTFIQAAVPRIVDETN------EAFF---AKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMV  318 (387)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~  318 (387)
                      +.+.+......+++.++|.++..++....      +.+.   .+..+.++++++.+.+.|++++++.+. .|++++|+|+
T Consensus       315 ~~~~~~~~~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~-~P~Gafy~~~  393 (407)
T PLN02368        315 EEIYKVASIALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCN-FTEGAMYSFP  393 (407)
T ss_pred             HHHHHHhcccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeC-CCCeeeEecc
Confidence            88877644456788899999999987431      1233   456788999999999999999898844 8999999998


Q ss_pred             ecCc
Q 038416          319 KLNV  322 (387)
Q Consensus       319 ~~~~  322 (387)
                      +++.
T Consensus       394 ~i~l  397 (407)
T PLN02368        394 QIKL  397 (407)
T ss_pred             CCCC
Confidence            7764

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=100.00  E-value=1.2e-42  Score=319.07  Aligned_cols=330  Identities=21%  Similarity=0.311  Sum_probs=264.6

Q ss_pred             ccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHH
Q 038416           10 RHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEIS   89 (387)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~   89 (387)
                      ..+++.+.+    .++.|+.+.+++.+.+..  ..+|++. +..+||+.+++|+      ++++++|++|+|+++++..+
T Consensus        21 ~~~l~~~~~----~~~~p~~~~~a~~~~~~~--~~~Y~~~-~~~~lr~~ia~~~------~~~~~~i~it~Ga~~~l~~~   87 (354)
T PRK06358         21 ILDFSANIN----PLGVPESLKQAITENLDK--LVEYPDP-DYLELRKRIASFE------QLDLENVILGNGATELIFNI   87 (354)
T ss_pred             eEEecCCCC----CCCCCHHHHHHHHHHHHh--hhcCCCc-cHHHHHHHHHHHh------CCChhhEEECCCHHHHHHHH
Confidence            455656544    467789999999988753  4578764 6789999999998      57899999999999999999


Q ss_pred             HHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHH
Q 038416           90 LSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQH  169 (387)
Q Consensus        90 ~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~  169 (387)
                      +.++ .+ ++|+++.|+|+.|...++  ..|.++..+++..++++.+| +++++.+.++++++++++||||||.+++.++
T Consensus        88 ~~~~-~~-~~v~i~~P~y~~~~~~~~--~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~v~~~~P~NPtG~~~~~~~  162 (354)
T PRK06358         88 VKVT-KP-KKVLILAPTFAEYERALK--AFDAEIEYAELTEETNFAAN-EIVLEEIKEEIDLVFLCNPNNPTGQLISKEE  162 (354)
T ss_pred             HHHh-CC-CcEEEecCChHHHHHHHH--HcCCeeEEEeCccccCCCcc-HHHHHhhccCCCEEEEeCCCCCCCCccCHHH
Confidence            9987 34 689999999999999999  99999999998766677888 6666666667899999999999999999999


Q ss_pred             HHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHH
Q 038416          170 LQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDS  249 (387)
Q Consensus       170 ~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~  249 (387)
                      +++|+++|+++++++|+||+|.++.+++.....+..++..+++++++||||.|+++|+|+||+++++       +.+++.
T Consensus       163 ~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~-------~~~~~~  235 (354)
T PRK06358        163 MKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSN-------KNLAEK  235 (354)
T ss_pred             HHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCC-------HHHHHH
Confidence            9999999999999999999999998776433334445555789999999999999999999999853       246777


Q ss_pred             HHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCC
Q 038416          250 IKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIG  329 (387)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  329 (387)
                      +..... ..+.+.+.|.++..++++  ..++++..+.++++++.+.+.|++++++. +..|. |.|+|++++.       
T Consensus       236 ~~~~~~-~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~~~~~-g~f~~~~~~~-------  303 (354)
T PRK06358        236 LLQMRE-PWSINTFADLAGQTLLDD--KEYIKKTIQWIKEEKDFLYNGLSEFKGIK-VYKPS-VNFIFFKLEK-------  303 (354)
T ss_pred             HHHhCC-CCcchHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHhcCCCcE-EcCCc-ceEEEEEcCc-------
Confidence            776544 456788889999888864  45678888899999999999999887776 43554 5689988863       


Q ss_pred             cHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHH
Q 038416          330 DDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAF  379 (387)
Q Consensus       330 ~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~  379 (387)
                       ..++...++ ++||.+.||..|+.  ++++||+++.+ ++.+++++.|.+.
T Consensus       304 -~~~~~~~l~-~~gI~v~~~~~f~~~~~~~iRls~~~~-~~~~~l~~~l~~~  352 (354)
T PRK06358        304 -PIDLRKELL-KKGILIRSCSNYRGLDENYYRVAVKSR-EDNKKLLKALEVI  352 (354)
T ss_pred             -hHHHHHHHH-HCCeEEEECCCCCCCCCCEEEEEeCCH-HHHHHHHHHHHHH
Confidence             457777775 56999999998853  47899998653 4444455555443

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=100.00  E-value=1.9e-42  Score=318.51  Aligned_cols=327  Identities=22%  Similarity=0.322  Sum_probs=266.0

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCC-CCCCCEEEcCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYK-LSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~-~~~~~i~~~~g~~~a~~   87 (387)
                      ..++.+.|+|    +++.++.+.+++++...   ...|++..|..+||+++++++.++++.. +++++|++|+|+++++.
T Consensus        22 ~~i~l~~~~p----~~~~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~   94 (357)
T TIGR03539        22 GIVDLSVGTP----VDPVPPLIRAALAAAAD---APGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVA   94 (357)
T ss_pred             CeEEccCCCC----CCCCCHHHHHHHHHHHh---hCCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHH
Confidence            3466667766    67788999999987654   3479988899999999999999888876 89999999999999999


Q ss_pred             HHHHhh-cCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCC
Q 038416           88 ISLSVL-ARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFS  166 (387)
Q Consensus        88 ~~~~~l-~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  166 (387)
                      .++..+ .++||.|++++|+|..+...+.  ..|.+++.++         +++.+.   .++++++++++|+||||.+++
T Consensus        95 ~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~--~~g~~~~~v~---------~~~~l~---~~~~~~v~~~~p~NPtG~~~~  160 (357)
T TIGR03539        95 WLPTLLGLGPGDTVVIPELAYPTYEVGAL--LAGATPVAAD---------DPTELD---PVGPDLIWLNSPGNPTGRVLS  160 (357)
T ss_pred             HHHHHHcCCCCCEEEECCCCcHHHHHHHH--hcCCEEeccC---------ChhhcC---ccCccEEEEeCCCCCcCccCC
Confidence            999888 7999999999999999998888  8898887663         222222   247899999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcEEeecccccccccCCCCCcccccc---CCCccEEEEecCcccccccccceEEEEeeCCCCcccc
Q 038416          167 YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF---GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQN  243 (387)
Q Consensus       167 ~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~  243 (387)
                      .+++++|.++|+++|+++|+||+|.++.+.+.....+...   ...+++++++||||.|+++|+|+||+++++       
T Consensus       161 ~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~~~-------  233 (357)
T TIGR03539       161 VDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAGDP-------  233 (357)
T ss_pred             HHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCceeEEEEecCH-------
Confidence            9999999999999999999999999888765432222110   112478999999999999999999999865       


Q ss_pred             hhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCc
Q 038416          244 SGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNV  322 (387)
Q Consensus       244 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~  322 (387)
                       ++++.+.+... ....++.+.|.++..++++  +.++.+..+.++++++.+.+.|++. ++. +..|.+|+|+|++++.
T Consensus       234 -~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~L~~~-g~~-~~~p~~~~~~~~~~~~  308 (357)
T TIGR03539       234 -ALVAELLTVRKHAGLMVPAPVQAAMVAALGD--DGHVAEQKARYAARRAQLKPALEKA-GFR-IDHSEAGLYLWATRGE  308 (357)
T ss_pred             -HHHHHHHHHHhhcccCCCHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHHHHHHHc-CCC-CcCCCccEEEEEECCC
Confidence             68887776543 3456788899998888864  4667778888899999999999887 677 4478899999998752


Q ss_pred             ccccCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHH
Q 038416          323 SMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERI  376 (387)
Q Consensus       323 ~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l  376 (387)
                             +..++...+ .++||.+.||..|+.  .+++||+++.+++++++++++|
T Consensus       309 -------~~~~~~~~l-~~~gV~v~pg~~f~~~~~~~iRis~~~~~~~i~~~~~~l  356 (357)
T TIGR03539       309 -------DAWDTVDRL-AELGILVAPGDFYGPAGSQHVRVALTATDERIAAAVARL  356 (357)
T ss_pred             -------CHHHHHHHH-HhCCEEECCccccCCCCCCeEEEEecCCHHHHHHHHHhh
Confidence                   344566554 678999999987754  5799999988889999999876

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=100.00  E-value=5.8e-42  Score=322.08  Aligned_cols=355  Identities=19%  Similarity=0.279  Sum_probs=267.5

Q ss_pred             ccccCCCCCCCCCCCCCC-CcHHHHHHHHHHhcCC----CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCCh
Q 038416            8 ETRHSPWPRRPLGVSLLS-DSTVAEDAVVDALRTA----HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGC   82 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~----~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~   82 (387)
                      +..++++.|+|.   ..+ +.+.+.+++++.+...    ....|++..|..+||++|++|+.+.++.++++++|++|+|+
T Consensus        30 ~~~i~l~~g~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga  106 (416)
T PRK09440         30 PGAIMLGGGNPA---HIPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGS  106 (416)
T ss_pred             CCceeccCCCCC---ccCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCh
Confidence            345777788772   122 3457778888776542    23579998999999999999999888888999999999999


Q ss_pred             HHHHHHHHHhhcC-----CCCeEEE-cCCCCcchHHHhhccCCC----ceeeeeccCCCC-CccCChhhHHHhhccCceE
Q 038416           83 SQAIEISLSVLAR-----PGANILI-PRPGYPLYEIHAAGSNNN----LEARHYDLLPEK-RWEVDLDGVEALADENTVA  151 (387)
Q Consensus        83 ~~a~~~~~~~l~~-----~g~~vl~-~~p~~~~~~~~~~~~~~g----~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~  151 (387)
                      ++++..++.++++     +||.|++ +.|+|+.|...+.  ..+    .....+++..+. ++.+|+++++  +.+++++
T Consensus       107 ~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~  182 (416)
T PRK09440        107 QSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGL--EEDLFVSYRPNIELLPEGQFKYHVDFEHLH--IDEDTGA  182 (416)
T ss_pred             HHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhh--ccCceeecccccccccccccccCCCHHHcc--cCCCceE
Confidence            9999999999984     5899999 7999999887554  333    222223332211 4678999887  4567899


Q ss_pred             EEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEE
Q 038416          152 IVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGW  231 (387)
Q Consensus       152 v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~  231 (387)
                      +++++||||||++++.+++++|+++|++++++||+||+|..+... ........ ...+++++++||||. +++|+|+||
T Consensus       183 i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~-~~~~~~~~-~~~~~vI~~~SfSK~-~~pGlRiG~  259 (416)
T PRK09440        183 ICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPG-IIFSEATP-LWNPNIILCMSLSKL-GLPGVRCGI  259 (416)
T ss_pred             EEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCC-cchhhcCc-cccCCeEEEeccccc-CCCcceEEE
Confidence            999999999999999999999999999999999999999753211 00111111 114679999999997 999999999


Q ss_pred             EEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccH-HHHHH-HHHHHHHHHHHHHHHhhc-CCC--CC
Q 038416          232 LVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNE-AFFAK-IIGLLKETADICYERIKE-IPC--IT  305 (387)
Q Consensus       232 i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~-~~~~~-~~~~~~~~~~~~~~~l~~-~~~--~~  305 (387)
                      +++++        ++++.+..... ...+++.+.|.++..++++... .+..+ ..+.++++++.+.+.|++ +++  +.
T Consensus       260 ~i~~~--------~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~  331 (416)
T PRK09440        260 VIADE--------EIIEALSNMNGIISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRYLPDEPCL  331 (416)
T ss_pred             EeCCH--------HHHHHHHHHHHHhccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeE
Confidence            99875        68888877654 3456788999999999986432 22223 456677777778777765 333  33


Q ss_pred             CCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC---------CCeEEEEeeCChHhHHHHHHHH
Q 038416          306 CPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM---------KNWLRIAFAAEPATLEDGLERI  376 (387)
Q Consensus       306 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---------~~~~Ri~~~~~~e~~~~~~~~l  376 (387)
                       +..|.+|+|+|++++...    .++.++...+ .++||.+.||..|..         .+++||+++.+.+++++++++|
T Consensus       332 -~~~p~gg~fiw~~~~~~~----~~~~~~~~~l-~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~~~~~l~~~i~~l  405 (416)
T PRK09440        332 -IHKPEGAIFLWLWFKDLP----ITTEELYQRL-KARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQDDEEIEKGIAIL  405 (416)
T ss_pred             -EecCCCceEEEEECCCCC----CCHHHHHHHH-HHCCEEEechHhhCCCCccccCCcCceEEEEecCCHHHHHHHHHHH
Confidence             347889999999987421    1455666655 678999999988743         2589999987899999999999


Q ss_pred             HHHHHHhhhc
Q 038416          377 KAFCQRHAKK  386 (387)
Q Consensus       377 ~~~~~~~~~~  386 (387)
                      ++++++.+..
T Consensus       406 ~~~~~~~~~~  415 (416)
T PRK09440        406 AEEVEKAYAE  415 (416)
T ss_pred             HHHHHHHhhc
Confidence            9999876543

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=100.00  E-value=4.3e-42  Score=316.62  Aligned_cols=325  Identities=17%  Similarity=0.240  Sum_probs=256.8

Q ss_pred             cCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHH
Q 038416           11 HSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISL   90 (387)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~   90 (387)
                      ++++.+.+    .+++|+.+.+++++.+..  ...|++. +..+||+++|+++      ++++++|++|+|+++++..++
T Consensus        25 i~l~~~~n----~~~~~~~~~~a~~~~~~~--~~~Y~~~-~~~~Lr~aia~~~------~v~~~~I~it~G~~~~i~~~~   91 (360)
T PRK07392         25 LDFSASIN----PLGPPESVIAAIQSALSA--LRHYPDP-DYRELRLALAQHH------QLPPEWILPGNGAAELLTWAG   91 (360)
T ss_pred             EEeCCcCC----CCCCCHHHHHHHHHHHHH--hhcCCCc-CHHHHHHHHHHHh------CcChhhEEECCCHHHHHHHHH
Confidence            44545433    588999999999887764  4578875 4689999999999      578899999999999999999


Q ss_pred             HhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCc---cCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           91 SVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRW---EVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        91 ~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      .++. +||.|+++.|+|..+...++  ..|.+++.++++.++++   ..+++++++.. ++++++++++||||||.+++.
T Consensus        92 ~~l~-~g~~vlv~~P~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~nP~NPTG~~~~~  167 (360)
T PRK07392         92 RELA-QLRAVYLITPAFGDYRRALR--AFGATVKELPLPLDQPSPGLTLRLQTLPPQL-TPNDGLLLNNPHNPTGKLWSR  167 (360)
T ss_pred             HHhC-CCCeEEEECCCcHHHHHHHH--HcCCeEEEEecccccCCcccccCHHHHHHhc-cCCCEEEEeCCCCCCCCCcCH
Confidence            9875 68899999999999999999  99999999998755543   34566666543 468899999999999999996


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      +++.+   +++++++ +|+||+|.+|.+++.....+..+...+++++++||||.|+++|+|+||+++++        +++
T Consensus       168 ~~l~~---l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~--------~~~  235 (360)
T PRK07392        168 EAILP---LLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHP--------DRL  235 (360)
T ss_pred             HHHHH---HHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCH--------HHH
Confidence            65555   4557775 66799999988765322222334445689999999999999999999999975        677


Q ss_pred             HHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccC
Q 038416          248 DSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLED  327 (387)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  327 (387)
                      +.+.+... ..+.+.+.|.++..++++  ..+.++..+.++++++.+.+.|+.++++. + .|.+++|+|++++.     
T Consensus       236 ~~~~~~~~-~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~-~~~~~~fl~~~~~~-----  305 (360)
T PRK07392        236 QRWQQWRD-PWPVNGLAAAAAIAALAD--RDFQQQTWAWLPPAREALFQGLASLPGLT-P-LPSAANFLLVQSQG-----  305 (360)
T ss_pred             HHHHhhCC-CCCCCHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHHhCCCcE-E-CCCCCCEEEEEcCC-----
Confidence            77765543 457888999999999875  45666677788889999999999888877 4 45778999988763     


Q ss_pred             CCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCC--hHhHHHHHHHH
Q 038416          328 IGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAE--PATLEDGLERI  376 (387)
Q Consensus       328 ~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~--~e~~~~~~~~l  376 (387)
                        ++.++...+++++||.+.||..|+.  ++++||+++..  .+++.++++++
T Consensus       306 --~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~~~l~~al~~~  356 (360)
T PRK07392        306 --SALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRTEAENQRLLEALAAI  356 (360)
T ss_pred             --CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence              4567877877888999999998864  47999999774  35666666654

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=3.3e-42  Score=318.53  Aligned_cols=329  Identities=20%  Similarity=0.295  Sum_probs=263.1

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      .+++++.|.+    .+++++.+.+++.+....  ...|++..| .+||+.+++++      ++++++|++|+|+++++..
T Consensus        37 ~~i~l~~~~~----~~~~~~~~~~al~~~~~~--~~~Y~~~~g-~~lr~~ia~~~------~~~~~~i~~t~G~~~~l~~  103 (371)
T PRK05166         37 RIAKLGSNEN----PLGPSPAVRRAFADIAEL--LRLYPDPQG-RALREAIAART------GVPADRIILGNGSEDLIAV  103 (371)
T ss_pred             ceEEcCCCCC----CCCCCHHHHHHHHHHHHH--hhcCCCCcH-HHHHHHHHHHh------CcCHHHEEEcCCHHHHHHH
Confidence            4556666544    467888999999876543  457988777 58999999998      4678899999999999999


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      ++.+++++||+|+++.|+|+.+...++  ..|.++..++++.  ++++|+++++++++++++++++++|+||||.+++.+
T Consensus       104 ~~~~~~~~gd~vli~~P~y~~~~~~~~--~~g~~~~~v~~~~--~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~  179 (371)
T PRK05166        104 ICRAVLRPGDRVVTLYPSFPLHEDYPT--MMGARVERVTVTP--DLGFDLDALCAAVARAPRMLMFSNPSNPVGSWLTAD  179 (371)
T ss_pred             HHHHhcCCCCEEEEcCCChHHHHHHHH--HcCCeEEEeecCC--CCCCCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHH
Confidence            999999999999999999999988989  9999999998753  457899999999988899999999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccC-CCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFG-SIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      ++++|+++|++ ++++|+||+|.++.+++.....+..+. ..+++++++||||.|+++|+|+||+++++       ++++
T Consensus       180 ~~~~l~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~-------~~l~  251 (371)
T PRK05166        180 QLARVLDATPP-ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSD-------PELV  251 (371)
T ss_pred             HHHHHHHhCCC-CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCC-------HHHH
Confidence            99999999875 889999999999885432222222222 23579999999999999999999988743       2577


Q ss_pred             HHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccC
Q 038416          248 DSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLED  327 (387)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  327 (387)
                      +.+.+... ....+.+.|.++..++..  .+++++..+.+.++++.+.+.|+++ ++. + .|.+|+|+|++++.     
T Consensus       252 ~~~~~~~~-~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~-g~~-~-~p~~g~fl~~~~~~-----  320 (371)
T PRK05166        252 GLLDRVRT-PFNVNGAAQAAALAALDD--EEHLAKGVALALAERERLKKELAEM-GYR-I-APSRANFLFFDARR-----  320 (371)
T ss_pred             HHHHHhcc-CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHC-cCe-e-CCCcCCEEEEeCCC-----
Confidence            77765543 456778888877777764  4678888888999999999999988 666 4 56678899998753     


Q ss_pred             CCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCC--hHhHHHHHHHH
Q 038416          328 IGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAE--PATLEDGLERI  376 (387)
Q Consensus       328 ~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~--~e~~~~~~~~l  376 (387)
                        ++.++...++ ++||.+.||..++..+++||+++..  .+.+.++++.+
T Consensus       321 --~~~~l~~~l~-~~gi~v~p~~~~~~~~~iRi~~~~~~~~~~l~~~l~~i  368 (371)
T PRK05166        321 --PASAVAEALL-RQGVIVKPWKQPGFETFIRVSIGSPEENDHFVAALDKV  368 (371)
T ss_pred             --CHHHHHHHHH-HCCeEEecCCCCCCCCeEEEEcCCHHHHHHHHHHHHHH
Confidence              4567777775 4699999998777789999999863  34555555544

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=100.00  E-value=5.7e-42  Score=315.19  Aligned_cols=330  Identities=21%  Similarity=0.303  Sum_probs=260.5

Q ss_pred             ccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHH
Q 038416           10 RHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEIS   89 (387)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~   89 (387)
                      .++.+.|.+    ++++|+.+++++.+.+...  ..|+. .+..+||+.+++++      ++++++|++|+|+++++..+
T Consensus        22 ~i~l~~~~~----~~~~p~~~~~a~~~~~~~~--~~y~~-~~~~~lr~~ia~~~------~~~~~~i~it~Ga~~~l~~~   88 (356)
T PRK08056         22 LLDFSANIN----PLGMPVSLKRAIIDNLDCA--ERYPD-VEYRHLHQALARHH------QVPASWILAGNGETESIFAV   88 (356)
T ss_pred             EEEeccccC----CCCCCHHHHHHHHHHHHhc--ccCcC-ccHHHHHHHHHHHh------CcChhhEEECCCHHHHHHHH
Confidence            455555544    6899999999999877642  46776 46899999999998      56889999999999999999


Q ss_pred             HHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHH
Q 038416           90 LSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQH  169 (387)
Q Consensus        90 ~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~  169 (387)
                      ++++ .+|+ ++++.|+|..|...++  ..|.+++.+++++++++.+| +++++.+.++++++++++|+||||..++.++
T Consensus        89 ~~~l-~~g~-viv~~P~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~~-~~~~~~~~~~~k~v~l~~p~NPTG~~~~~~~  163 (356)
T PRK08056         89 VSGL-KPRR-AMIVTPGFAEYRRALQ--QVGCEIRRYSLREADGWQLT-DAILEALTPDLDCLFLCTPNNPTGLLPERQL  163 (356)
T ss_pred             HHHh-CCCC-EEEeCCCcHHHHHHHH--HcCCeEEEEecccccCCCcc-HHHHHhccCCCCEEEEeCCcCCCCCCCCHHH
Confidence            9987 5675 7778999999999999  99999999998766667776 4555666778999999999999999999999


Q ss_pred             HHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHH
Q 038416          170 LQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDS  249 (387)
Q Consensus       170 ~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~  249 (387)
                      +++|+++|+++++++|+|++|.++.+.+....+.  +...+++++++|+||.|+++|+|+||+++++       +++++.
T Consensus       164 ~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~--~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~-------~~~~~~  234 (356)
T PRK08056        164 LQAIAERCKSLNIALILDEAFIDFIPDETGFIPQ--LADNPHLWVLRSLTKFYAIPGLRLGYLVNSD-------DAAVAR  234 (356)
T ss_pred             HHHHHHHHHhcCCEEEEecchhccCCcchHHHHH--hccCCCEEEEEechhhccCcchhheeeecCC-------HHHHHH
Confidence            9999999999999999999999987654322221  2223578999999999999999999999853       146676


Q ss_pred             HHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCC
Q 038416          250 IKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIG  329 (387)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  329 (387)
                      +.+... ..+++.+.+.++..++..  ..+..+..+.++++++.+.+.|+.++++. + .|.+++|+|++++.       
T Consensus       235 l~~~~~-~~~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~-~~~~~~~~~~~~~~-------  302 (356)
T PRK08056        235 MRRQQM-PWSINAFAALAGEVILQD--RAYQQATWQWLAEEGARFYQALCALPLLT-V-WPGRANYLFLRCER-------  302 (356)
T ss_pred             HHHhCC-CCchhHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHhcCCCcE-E-cCCCCcEEEEEcCC-------
Confidence            765432 456677788888888753  46677778889999999999999887776 4 35568899998863       


Q ss_pred             cHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHH
Q 038416          330 DDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFC  380 (387)
Q Consensus       330 ~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~  380 (387)
                      +..++...++ ++||.+.+|..|..  .+++||+++. +++.+.+++.|++++
T Consensus       303 ~~~~~~~~l~-~~gI~v~~~~~f~~~~~~~iRis~~~-~~~~~~l~~~l~~~~  353 (356)
T PRK08056        303 PDIDLQRALL-TQRILIRSCANYPGLDSRYYRVAIRS-AAENERLLAALRNVL  353 (356)
T ss_pred             ChHHHHHHHH-HCCeEEEECCCCCCCCCCEEEEEEcC-HHHHHHHHHHHHHHH
Confidence            3456777765 57999999998843  4699999974 455556666665554

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=8.1e-42  Score=315.31  Aligned_cols=338  Identities=18%  Similarity=0.248  Sum_probs=275.6

Q ss_pred             cccccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHH
Q 038416            5 KGQETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQ   84 (387)
Q Consensus         5 ~g~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~   84 (387)
                      +|++++++.+.|.+    ++++++.+.+++.+....  ..+|++. +..+||++||+++      ++++++|++|+|+++
T Consensus        29 ~g~~~~~~l~~~~~----~~~~~~~~~~a~~~~~~~--~~~Y~~~-~~~~Lr~~ia~~~------~~~~~~I~it~G~~~   95 (369)
T PRK08153         29 RGRPFRARIGANES----GFGPSPSVIAAMREAAAE--IWKYGDP-ENHDLRHALAAHH------GVAPENIMVGEGIDG   95 (369)
T ss_pred             cCCcceeEecCCCC----CCCCCHHHHHHHHHHHHH--hhcCCCC-ccHHHHHHHHHHh------CCCHHHEEEcCCHHH
Confidence            67777778888766    899999999999987643  3468875 5789999999998      568899999999999


Q ss_pred             HHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhh-ccCceEEEEeCCCCCccc
Q 038416           85 AIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALA-DENTVAIVIINPGNPCGN  163 (387)
Q Consensus        85 a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~l~~p~nptG~  163 (387)
                      ++..++.+++++||.|+++.|+|+.+...+.  ..|.++..+|++.+   .+|++++++.+ +.+++++++++|+||||.
T Consensus        96 ~l~~~~~~~~~~gd~vlv~~p~y~~~~~~~~--~~g~~~~~vp~~~~---~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~  170 (369)
T PRK08153         96 LLGLIVRLYVEPGDPVVTSLGAYPTFNYHVA--GFGGRLVTVPYRDD---REDLDALLDAARRENAPLVYLANPDNPMGS  170 (369)
T ss_pred             HHHHHHHHhcCCCCEEEECCCcchHHHHHHH--HcCCeEEEeeCCCC---CCCHHHHHHHhcccCCcEEEEeCCCCCCCC
Confidence            9999999999999999999999999988888  89999999887432   57899988766 457899999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccc
Q 038416          164 VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQN  243 (387)
Q Consensus       164 ~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~  243 (387)
                      ++|.+++++++++|++ +++||+||+|..+.+.+. ..++..  ..+++++++||||.|+++|+|+||+++++       
T Consensus       171 ~~~~~~l~~l~~~~~~-~~~lI~DE~y~~~~~~~~-~~~~~~--~~~~~i~~~SfSK~~g~~GlRiG~~v~~~-------  239 (369)
T PRK08153        171 WHPAADIVAFIEALPE-TTLLVLDEAYCETAPAGA-APPIDT--DDPNVIRMRTFSKAYGLAGARVGYAIGAP-------  239 (369)
T ss_pred             CCCHHHHHHHHHhCCC-CcEEEEeCchhhhcCccc-chhhhh--cCCCEEEEecchHhccCcchheeeeecCH-------
Confidence            9999999999998874 899999999999876542 222222  23579999999999999999999999975       


Q ss_pred             hhHHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcc
Q 038416          244 SGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVS  323 (387)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~  323 (387)
                       ++++.+.+... .++.+++.|.++..++++  ..++++..+.++++++.+.+.|++. ++. + .|.+++|+|++++..
T Consensus       240 -~~~~~l~~~~~-~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~~~~~L~~~-g~~-~-~p~~~~f~~~~~~~~  312 (369)
T PRK08153        240 -GTIKAFDKVRN-HFGMNRIAQAAALAALKD--QAYLAEVVGKIAAARDRIAAIARAN-GLT-P-LPSATNFVAIDCGRD  312 (369)
T ss_pred             -HHHHHHHHhhc-CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHC-CCc-c-CCCcCcEEEEECCCC
Confidence             68887776654 356889999999999974  5678888899999999999999887 665 4 578899999887521


Q ss_pred             cccCCCcHHHHHHHHHHhcCeEEE-cCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHHhhh
Q 038416          324 MLEDIGDDLEFCLKLAKEESVIIL-PGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       324 ~~~~~~~~~~~~~~ll~~~gi~v~-~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      .    ....++..++. ++||.+. |+.. ...+++||+++ ++++++.+++.|.++++..++
T Consensus       313 ~----~~a~~l~~~l~-~~Gi~v~~p~~~-~~~~~iRis~~-~~~~~~~~~~al~~~~~~~~~  368 (369)
T PRK08153        313 G----AFARAVLDGLI-ARDIFVRMPGVA-PLDRCIRVSCG-PDEELDLFAEALPEALEAARK  368 (369)
T ss_pred             c----ccHHHHHHHHH-HCCeEEeeCCCC-CCCCeEEEecC-CHHHHHHHHHHHHHHHHHhhc
Confidence            1    13456666664 5699995 6643 23579999998 678999999999999876654

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.1e-41  Score=315.09  Aligned_cols=333  Identities=19%  Similarity=0.283  Sum_probs=265.6

Q ss_pred             cCCCCCCCCCCCCCCCcHHHHHHHHHHhcCC--CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416           11 HSPWPRRPLGVSLLSDSTVAEDAVVDALRTA--HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      ++.+.+.+    ++++++.+.+++.+.+...  ....|++ .+..+||+.+++|+.+.++.++++++|++|+|+++++..
T Consensus        29 i~l~~~~~----~~~~~~~~~~al~~~l~~~~~~~~~Y~~-~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~  103 (368)
T PRK03317         29 VRLNTNEN----PYPPSPALVADIAEAVAEAAAGLNRYPD-RDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQ  103 (368)
T ss_pred             eEecCCCC----CCCCCHHHHHHHHHHHhhhhhhhccCCC-CchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHH
Confidence            44545444    7899999999999987532  3457875 578999999999999988888899999999999999999


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc-cCceEEEEeCCCCCccccCCH
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD-ENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~v~l~~p~nptG~~~~~  167 (387)
                      ++.+++++||.|+++.|+|..+...+.  ..|.+++.++.  .+++++|+++++++++ ++++++++++|+||||.+++.
T Consensus       104 ~~~~~~~~gd~v~v~~P~y~~~~~~~~--~~g~~~~~~~~--~~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~  179 (368)
T PRK03317        104 LLQAFGGPGRTALGFVPSYSMHPIIAR--GTHTEWVEGPR--AADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPL  179 (368)
T ss_pred             HHHHhcCCCCEEEEeCCChHHHHHHHH--hcCCeeEEccc--CCCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCH
Confidence            999999999999999999999999998  88988887765  3467899999999886 467899999999999999998


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      +++++|+++|   ++++|+||+|.+|.+.+.. ..+...+...++++++||||.|+++|+|+||+++++        +++
T Consensus       180 ~~l~~l~~~~---~~~lI~DE~y~~~~~~~~~-~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~~--------~~~  247 (368)
T PRK03317        180 DDVEAILDAA---PGIVVVDEAYAEFRRSGTP-SALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAAP--------AVV  247 (368)
T ss_pred             HHHHHHHHHC---CceEEEeCCchhhcccCCc-CHHHHHHhCCCEEEEEechhhhccchhhhhhhhCCH--------HHH
Confidence            8888888877   6999999999998765532 222222333478999999999999999999999865        788


Q ss_pred             HHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccC
Q 038416          248 DSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLED  327 (387)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  327 (387)
                      +.+..... .+..+++.|.++..+++..  ..+.+..+++.++++.+.+.|+++ ++. +..+.+++++|..++      
T Consensus       248 ~~l~~~~~-~~~~s~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~~~~~~~~~~------  316 (368)
T PRK03317        248 DALRLVRL-PYHLSAVTQAAARAALRHA--DELLASVAALRAERDRVVAWLREL-GLR-VAPSDANFVLFGRFA------  316 (368)
T ss_pred             HHHHhcCC-CCCCCHHHHHHHHHHhhCH--HHHHHHHHHHHHHHHHHHHHHHHC-CCE-eCCCCCcEEEEeccC------
Confidence            88876543 4677888999988888752  334455667888888899999887 676 436777777765553      


Q ss_pred             CCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHH
Q 038416          328 IGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       328 ~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~  382 (387)
                        +..++...+ .++||.+.+.   +.++++||+++ ++++++.+++.|+++++.
T Consensus       317 --~~~~~~~~l-~~~Gv~v~~~---~~~~~iRi~~~-~~~~~~~~~~~l~~~~~~  364 (368)
T PRK03317        317 --DRHAVWQGL-LDRGVLIRDV---GIPGWLRVTIG-TPEENDAFLAALAEVLAT  364 (368)
T ss_pred             --CHHHHHHHH-HHCCEEEEeC---CCCCeEEEecC-CHHHHHHHHHHHHHHHHH
Confidence              345566655 5679999874   34689999987 457788888888887654

>PRK08637 hypothetical protein; Provisional

Probab=100.00  E-value=3.3e-41  Score=313.52  Aligned_cols=357  Identities=16%  Similarity=0.221  Sum_probs=265.7

Q ss_pred             cccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcC---CCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCC---CCCEEEcC
Q 038416            7 QETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRT---AHYNCYSPTLGVPSARRGIADYLNRDLPYKLS---PEDVYLTL   80 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~---~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~---~~~i~~~~   80 (387)
                      ++.+.+.++|.-+...    .+.+.+++++....   .....|++..|.++||+.+++++.+..+ ...   .++|++|+
T Consensus         2 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~-~~~~~~~~~I~it~   76 (388)
T PRK08637          2 KATKYNATIGMATEKG----GPMYLSSLQDLLNDLTPDEIFPYAPPQGIPELRDLWQEKMLRENP-SLSGKKMSLPIVTN   76 (388)
T ss_pred             CccceecceeeEecCC----CcchHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHHhccCc-cccccccceeeEcc
Confidence            3456677777552222    22444555554442   3456899999999999999999876543 222   36789999


Q ss_pred             ChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHh-hccCCCceeeeeccCCCCCccCChhhHHHhhc----cCceEEEEe
Q 038416           81 GCSQAIEISLSVLARPGANILIPRPGYPLYEIHA-AGSNNNLEARHYDLLPEKRWEVDLDGVEALAD----ENTVAIVII  155 (387)
Q Consensus        81 g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~v~l~  155 (387)
                      |+++++..++.+++++||.|+++.|+|+.+...+ .  ..|.+++.+++.. +++++|++++++.++    +.+++++++
T Consensus        77 G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~--~~g~~vv~v~~~~-~~~~~d~~~l~~~~~~~~~~~~~~~~~~  153 (388)
T PRK08637         77 ALTHGLSLVADLFVDQGDTVLLPDHNWGNYKLTFNT--RRGAEIVTYPIFD-EDGGFDTDALKEALQAAYNKGKVIVILN  153 (388)
T ss_pred             chHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHH--hcCCEEEEecccC-CCCcCCHHHHHHHHHhhccCCCEEEEEe
Confidence            9999999999999999999999999999998765 4  4799999999842 234689999998876    456677888


Q ss_pred             CCCCCccccCCHHHHHHHHHHHHh-----cCcEEeecccccccccCCCCCccc-ccc-CCCccE--EEEecCcccccccc
Q 038416          156 NPGNPCGNVFSYQHLQKIARTARN-----LGIIVIADEVYNHLAFGSTPYVPM-GVF-GSIVPV--ITLGSISKRWIVPG  226 (387)
Q Consensus       156 ~p~nptG~~~~~~~~~~l~~~~~~-----~~~~li~D~~~~~~~~~~~~~~~~-~~~-~~~~~~--~~i~s~sK~~~~~g  226 (387)
                      +||||||..++.+++++|+++|++     ++++||+||+|.++.+++....++ ..+ +..+++  ++++|+||.|+++|
T Consensus       154 ~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pG  233 (388)
T PRK08637        154 FPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWG  233 (388)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcc
Confidence            999999999999999999998875     899999999999998877544332 222 223454  45569999999999


Q ss_pred             cceEEEEeeCCCCcccchhHHHHHHhh----hh-ccCCcchHHHHHHHHHhhhcc-HHHHHHHHHHHHHHHHHHHHHhhc
Q 038416          227 WRLGWLVTSDPNGILQNSGFVDSIKGC----LN-AASHPVTFIQAAVPRIVDETN-EAFFAKIIGLLKETADICYERIKE  300 (387)
Q Consensus       227 ~r~G~i~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~  300 (387)
                      +|+||++++.+.  -.++++.+.+.+.    .. ....++.+.|.++..++++.. ...+.+....++++++.+.+.|+.
T Consensus       234 lRlG~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~l~~  311 (388)
T PRK08637        234 FRVGFITFGTKA--GSSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALNSPEFDKEKQEKFQILKERYEKTKEVLYD  311 (388)
T ss_pred             cceEEEEEcccc--CCcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999975210  0012566666542    11 234678899999999997532 233445556677888888888866


Q ss_pred             C---CCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeC-ChHhHHHHHHHH
Q 038416          301 I---PCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAA-EPATLEDGLERI  376 (387)
Q Consensus       301 ~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~-~~e~~~~~~~~l  376 (387)
                      .   +++. +..|.+|+|+|++++.      .++.+++..+++++||.+.+.    .++++||+++. +.+++++++++|
T Consensus       312 ~~~~~~~~-~~~~~~g~~~~~~l~~------~~~~~l~~~l~~~~gv~~~~~----~~~~iRi~~~~~~~~~i~~~~~~l  380 (388)
T PRK08637        312 GKYDDAWQ-AYPFNSGYFMCLKLKG------VDAEELRVHLLEKYGIGTIAL----NETDLRIAFSCVEEEDIPELFDSI  380 (388)
T ss_pred             hCCCCCcc-cccccceEEEEecCCh------HHHHHHHHHHhhhcceEEEec----cCCceEEEeecCCHHHHHHHHHHH
Confidence            4   2566 4478899999998862      145678887777789988753    25789999965 789999999999


Q ss_pred             HHHHHHhh
Q 038416          377 KAFCQRHA  384 (387)
Q Consensus       377 ~~~~~~~~  384 (387)
                      .+++++++
T Consensus       381 ~~~~~~~~  388 (388)
T PRK08637        381 YKAIKDLR  388 (388)
T ss_pred             HHHHHhcC
Confidence            99998764

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.6e-41  Score=314.16  Aligned_cols=325  Identities=18%  Similarity=0.274  Sum_probs=259.6

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      ..++++.|.+    .+++++.+.+++.+..   ....|+. .+..+||+.+++++      ++++++|++|+|+++++..
T Consensus        53 ~~i~l~~n~~----p~~~~~~v~~a~~~~~---~~~~Yp~-~~~~~lr~~ia~~~------~~~~~~I~~t~Ga~~~i~~  118 (380)
T PLN03026         53 DIVKLDANEN----PYGPPPEVLEALGNMK---FPYVYPD-PESRRLRAALAEDS------GLESENILVGCGADELIDL  118 (380)
T ss_pred             ceEEccCCCC----CCCCCHHHHHHHHhhH---hhccCCC-CCHHHHHHHHHHHh------CcChhhEEEcCCHHHHHHH
Confidence            3445555443    5788888999886532   2345776 46799999999998      4688999999999999999


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhh-ccCceEEEEeCCCCCccccCCH
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALA-DENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      ++.+++++||+|+++.|+|..|...++  ..|.++..++++  .++.+|++++++++ +++++++++++|+||||..++.
T Consensus       119 ~~~~~~~~gd~Vlv~~P~y~~y~~~~~--~~g~~~~~v~~~--~~~~~d~~~l~~~~~~~~~~~v~l~~P~NPTG~~~~~  194 (380)
T PLN03026        119 LMRCVLDPGDKIIDCPPTFGMYVFDAA--VNGAEVIKVPRT--PDFSLDVPRIVEAVETHKPKLLFLTSPNNPDGSIISD  194 (380)
T ss_pred             HHHHhcCCCCEEEEcCCChHHHHHHHH--HcCCEEEEeecC--CCCCcCHHHHHHHHhccCCcEEEEeCCCCCCCCCCCH
Confidence            999999999999999999999988888  899999999874  35788999999988 6789999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      +++++|++.+    +++|+||+|.+|.+.+.   ....+...+++++++||||.|+++|+|+||+++++        +++
T Consensus       195 ~~l~~l~~~~----~~vi~DeaY~~~~~~~~---~~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~~--------~~i  259 (380)
T PLN03026        195 DDLLKILELP----ILVVLDEAYIEFSTQES---RMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPL--------SII  259 (380)
T ss_pred             HHHHHHHhcC----CEEEEECcchhhcCCcc---hHHHHHhCCCEEEEecchHhhcCccccceeeecCH--------HHH
Confidence            8888888753    89999999998875432   12223334679999999999999999999999865        788


Q ss_pred             HHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccC
Q 038416          248 DSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLED  327 (387)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  327 (387)
                      +.+.+... ....+.++|.++..+|++  ..++++..+.+.++++.+.+.|++++++. + .|.+++|+|++++..    
T Consensus       260 ~~l~~~~~-~~~~~~~~q~aa~~aL~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~-~p~~~~f~~~~~~~~----  330 (380)
T PLN03026        260 EYLWRAKQ-PYNVSVAAEVAACAALSN--PKYLEDVKNALVEERERLFGLLKEVPFLE-P-YPSDANFILCRVTSG----  330 (380)
T ss_pred             HHHHHhcC-CCCCCHHHHHHHHHHhhC--HHHHHHHHHHHHHHHHHHHHHHHHCCCCe-E-CCCCCeEEEEECCCC----
Confidence            88876654 356788889998888875  46788888999999999999999885444 4 678899999987631    


Q ss_pred             CCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHH
Q 038416          328 IGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKA  378 (387)
Q Consensus       328 ~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~  378 (387)
                       .+..++...++ ++||.+.++..++..+++||+++. +++.+.+++.|++
T Consensus       331 -~~~~~~~~~l~-~~gI~v~~~~~~~~~~~lRis~~~-~~~~~~l~~al~~  378 (380)
T PLN03026        331 -RDAKKLKEDLA-KMGVMVRHYNSKELKGYIRVSVGK-PEHTDALMEALKQ  378 (380)
T ss_pred             -CCHHHHHHHHH-HCCeEEEECCCCCCCCEEEEecCC-HHHHHHHHHHHHH
Confidence             14567777775 679999998765567899999984 4455555555543

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=100.00  E-value=2e-41  Score=305.79  Aligned_cols=320  Identities=20%  Similarity=0.355  Sum_probs=271.0

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEc
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIP  103 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~  103 (387)
                      +++|+.+.++++..+..  ...|++. ...+|+++++++++.     .++++|++++|+.+.+..++++++.+||+|+++
T Consensus        34 ~gp~~~~~~~~~~~~~~--~~rYPd~-~~~~l~~a~a~~~~~-----~~~~~V~~gnGsde~i~~l~~~~~~~gd~vl~~  105 (356)
T COG0079          34 YGPPPKVIEAIRAALDK--LNRYPDP-DYRELRAALAEYYGV-----VDPENVLVGNGSDELIELLVRAFVEPGDTVLIP  105 (356)
T ss_pred             CCCCHHHHHHHHHHHHh--hccCCCC-cHHHHHHHHHHHhCC-----CCcceEEEcCChHHHHHHHHHHhhcCCCEEEEc
Confidence            78889999999998873  4579885 789999999999941     678999999999999999999999999999999


Q ss_pred             CCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcE
Q 038416          104 RPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGII  183 (387)
Q Consensus       104 ~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~  183 (387)
                      .|+|.-|...++  ..|.+++.+++.+   |..|++.+.+++++++++|++||||||||..++.++++++++.+.+ +.+
T Consensus       106 ~Ptf~~Y~~~a~--~~g~~~~~v~~~~---~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~-~~~  179 (356)
T COG0079         106 EPTFSMYEIAAQ--LAGAEVVKVPLKE---FRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRALLEALPE-GGL  179 (356)
T ss_pred             CCChHHHHHHHH--hcCCeEEEecccc---cccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-CcE
Confidence            999999999999  9999999999854   7899999999998899999999999999999999999999999988 999


Q ss_pred             EeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhhccCCcchH
Q 038416          184 VIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTF  263 (387)
Q Consensus       184 li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (387)
                      ||+||+|.+|.-    ...+......+++++++||||+||++|+|+||++++.        ++++.+.+.+. .++.+.+
T Consensus       180 vVvDEAY~eF~~----~~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~~--------~~i~~l~~vr~-p~~v~~~  246 (356)
T COG0079         180 VVIDEAYIEFSP----ESSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIANP--------ELIAALNKVRP-PFNVSSP  246 (356)
T ss_pred             EEEeCchhhcCC----chhhhhccCCCCEEEEEecHHhhhcchhceeeccCCH--------HHHHHHHHhcC-CCCCCHH
Confidence            999999999763    2222212244679999999999999999999998865        89999998875 5778899


Q ss_pred             HHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcC
Q 038416          264 IQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEES  343 (387)
Q Consensus       264 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g  343 (387)
                      ++.++.+++.+  ++++++..+.+...++++.+.|+.++ +..+ .|+.++|++++++.      .....+...| .++|
T Consensus       247 a~~aa~aal~~--~~~~~~~~~~~~~~r~rl~~~l~~~~-~~~v-~pS~aNFvlv~~~~------~~~~~l~~~L-~~~g  315 (356)
T COG0079         247 ALAAAIAALRD--ADYLEESVERIREERERLYAALKALG-LFGV-FPSQANFVLVRVPD------AEAAALAEAL-LKKG  315 (356)
T ss_pred             HHHHHHHHccc--HHHHHHHHHHHHHHHHHHHHHHHhCC-CCee-cCCCCcEEEEECCC------ccHHHHHHHH-HHCC
Confidence            99999998886  48899999999999999999999985 4424 67789999999874      1223455555 5569


Q ss_pred             eEEEcCCc-cCCCCeEEEEeeCChHhHHHHHHHHHHHHHH
Q 038416          344 VIILPGRT-VGMKNWLRIAFAAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       344 i~v~~g~~-~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~  382 (387)
                      |.++.... ...++|+||++++.+|. +++++.|.++++.
T Consensus       316 iivR~~~~~~~~~~~lRitvgt~een-~~ll~AL~~~~~~  354 (356)
T COG0079         316 ILVRDCSSVGLLPGYLRITVGTPEEN-DRLLAALREVLKG  354 (356)
T ss_pred             EEEEeCCCCCCCCCeEEEEeCCHHHH-HHHHHHHHHHHhc
Confidence            99998754 23467999999987777 8888888877654

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=2.7e-41  Score=312.71  Aligned_cols=332  Identities=20%  Similarity=0.275  Sum_probs=270.4

Q ss_pred             ccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHH
Q 038416           10 RHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEIS   89 (387)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~   89 (387)
                      +++++.+.+    .+++++.+.+++.+....  ...|++.. ..+||+.+++++      ++++++|++|+|+++++..+
T Consensus        34 ~i~l~~~~~----~~~~~~~~~~a~~~~~~~--~~~y~~~~-~~~lr~~ia~~~------~~~~~~i~~t~G~~~~l~~~  100 (367)
T PRK02731         34 IIKLASNEN----PLGPSPKAIEAIRAAADE--LHRYPDGS-GFELKAALAEKF------GVDPERIILGNGSDEILELL  100 (367)
T ss_pred             eEEecCCCC----CCCCCHHHHHHHHHHHHh--hcCCCCCc-HHHHHHHHHHHh------CcCHHHEEEcCCHHHHHHHH
Confidence            455555544    567788999999988753  45787653 479999999998      46788999999999999999


Q ss_pred             HHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHH
Q 038416           90 LSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQH  169 (387)
Q Consensus        90 ~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~  169 (387)
                      +.+++++||+|+++.|+|..+.....  ..|.+++.++.   +++.+|++++++.+++++++|++++|+||||.+++.++
T Consensus       101 ~~~l~~~gd~vl~~~p~y~~~~~~~~--~~g~~~~~~~~---~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~  175 (367)
T PRK02731        101 ARAYLGPGDEVIYSEHGFAVYPIAAQ--AVGAKPVEVPA---KDYGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLPAEE  175 (367)
T ss_pred             HHHhcCCCCEEEEecCCHHHHHHHHH--HcCCeEEEecc---cCCCCCHHHHHHHhCCCCcEEEEeCCCCCCCcCCCHHH
Confidence            99999999999999999998888888  89999998886   34678999999999888999999999999999999999


Q ss_pred             HHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHH
Q 038416          170 LQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDS  249 (387)
Q Consensus       170 ~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~  249 (387)
                      ++++++.|+ +|+++|+|++|..+.+.+....++..+...+++++++|+||.|+++|+|+||+++++        ++++.
T Consensus       176 l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~--------~~~~~  246 (367)
T PRK02731        176 VERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPP--------EIIDA  246 (367)
T ss_pred             HHHHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCCH--------HHHHH
Confidence            999999875 699999999999887655333333333344678999999999999999999999975        68887


Q ss_pred             HHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCC
Q 038416          250 IKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIG  329 (387)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  329 (387)
                      +..... .+..+.++|.++..++++  ..++++..+.++++++.+.+.|+++ ++. + .|..|+|+|++++..     .
T Consensus       247 l~~~~~-~~~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~~~g~~~~i~~~~~-----~  315 (367)
T PRK02731        247 LNRVRQ-PFNVNSLALAAAVAALDD--DAFVEKSRALNAEGMAWLTEFLAEL-GLE-Y-IPSVGNFILVDFDDG-----K  315 (367)
T ss_pred             HHHccC-CCCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHC-CCc-c-CCCCceEEEEECCCC-----C
Confidence            776543 345677889998888874  4667888888899999999999988 676 4 355688999988431     2


Q ss_pred             cHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHH
Q 038416          330 DDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       330 ~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~  381 (387)
                      +..++...+ .++||.+.++..|+.++++||+++ +.++++.+++.|+++++
T Consensus       316 ~~~~~~~~L-~~~gI~v~~~~~~~~~~~iRis~~-~~~e~~~l~~aL~~~~~  365 (367)
T PRK02731        316 DAAEAYQAL-LKRGVIVRPVAGYGLPNALRITIG-TEEENRRFLAALKEFLA  365 (367)
T ss_pred             CHHHHHHHH-HHCCEEEEeCCCCCCCCeEEEecC-CHHHHHHHHHHHHHHHh
Confidence            456777776 467999999988876789999997 56788999999988764

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.9e-41  Score=312.21  Aligned_cols=324  Identities=20%  Similarity=0.296  Sum_probs=261.9

Q ss_pred             ccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCC-CCEEEcCChHHHHHH
Q 038416           10 RHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSP-EDVYLTLGCSQAIEI   88 (387)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~-~~i~~~~g~~~a~~~   88 (387)
                      +++...|.+    ++++|+.+++++.+.+......+|++ .+..+||+.++++++      ..+ ++|++|+|+++++..
T Consensus        28 ~i~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~lr~~ia~~~~------~~~~~~I~~t~G~~~~i~~   96 (356)
T PRK04870         28 MVKLDAMEN----PYRLPAELRAELGERLAEVALNRYPD-PRAAALKAALRAAMG------VPAGADVLLGNGSDELIQL   96 (356)
T ss_pred             ceeCcCCCC----CCCCCHHHHHHHHHHhhccccccCCC-CCHHHHHHHHHHHhC------cCCCCcEEEcCCHHHHHHH
Confidence            444555544    78999999999999886544567887 577999999999994      333 589999999999999


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc-cCceEEEEeCCCCCccccCCH
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD-ENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~v~l~~p~nptG~~~~~  167 (387)
                      ++.+++++||+|+++.|+|..+...++  ..|.+++.++++  +++.+|++++++++. .+++++++++|+||||..++.
T Consensus        97 ~~~~~~~~gd~vlv~~P~y~~~~~~~~--~~g~~~~~i~~~--~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~  172 (356)
T PRK04870         97 LALACAKPGATVLAPEPGFVMYRMSAK--LAGLEFVGVPLT--ADFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDD  172 (356)
T ss_pred             HHHHhcCCCCEEEECCCCHHHHHHHHH--HcCCEEEEecCC--CCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCH
Confidence            999999999999999999999999999  999999999985  347899999999885 478999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      +++++|+++|   ++++|+||+|..+....  ..+  .+...++++++.|||| ++++|+|+||+++++        +++
T Consensus       173 ~~~~~i~~~~---~~~ii~De~y~~~~~~~--~~~--~~~~~~~vi~~~S~SK-~~~~GlRiG~~i~~~--------~~i  236 (356)
T PRK04870        173 ADVERIIEAA---PGLVVVDEAYQPFAGDS--WLP--RLARFPNLLVMRTVSK-LGLAGLRLGYLAGHP--------AWI  236 (356)
T ss_pred             HHHHHHHHHC---CCEEEEECCchhhcCcc--hHH--HHhhCCCEEEEecchh-hhhHHHhhhhhhCCH--------HHH
Confidence            9999999998   67899999999865321  111  1233457999999999 799999999999875        688


Q ss_pred             HHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccC
Q 038416          248 DSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLED  327 (387)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  327 (387)
                      +.+..... ..+.+.++|.++..++++  ..++++..++++++++.+.+.|++++++. + .|.+|+|+|++++      
T Consensus       237 ~~~~~~~~-~~~~~~~~q~~a~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~-~~~~~~~~~~~~~------  305 (356)
T PRK04870        237 AELDKVRP-PYNVNVLTQATALFALEH--VDVLDAQAAQLRAERTRLAAALAALPGVT-V-FPSAANFILVRVP------  305 (356)
T ss_pred             HHHHHccC-CCcCCHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHhCCCcE-E-CCCCCeEEEEECC------
Confidence            88876543 345677888888777764  34578888889999999999999888876 4 4667889999876      


Q ss_pred             CCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHH
Q 038416          328 IGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAF  379 (387)
Q Consensus       328 ~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~  379 (387)
                        +..++... ++++||.+.+|..|+.  .+++||+++. .++.+++++.|.++
T Consensus       306 --~~~~~~~~-l~~~gI~v~~~~~f~~~~~~~iRis~~~-~~~~~~l~~al~~~  355 (356)
T PRK04870        306 --DAAAVFDG-LKTRGVLVKNLSGMHPLLANCLRVTVGT-PEENAQFLAALKAA  355 (356)
T ss_pred             --CHHHHHHH-HHHCCEEEEECCCCCCCCCCeEEEeCCC-HHHHHHHHHHHHHh
Confidence              24455554 5778999999988753  6799999984 56677777776654

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-41  Score=291.49  Aligned_cols=330  Identities=22%  Similarity=0.382  Sum_probs=276.6

Q ss_pred             CCCCCCCCcHHHHHHHHHHHhhcCC--CCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCc
Q 038416           44 NCYSPTLGVPSARRGIADYLNRDLP--YKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNL  121 (387)
Q Consensus        44 ~~y~~~~~~~~lr~~ia~~~~~~~~--~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~  121 (387)
                      ..|.+..|..++|+++|+++.+-.+  ...+|+++++++|+|.+++++...|+.|||..+++.|.|+++..-++ -+.|.
T Consensus       115 a~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl~-~rTgv  193 (471)
T KOG0256|consen  115 AMFQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRDLR-WRTGV  193 (471)
T ss_pred             hhcccccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCcccccce-eccCc
Confidence            4567777999999999999998665  34578999999999999999999999999999999999999876555 14688


Q ss_pred             eeeeeccCCCCCccCChhhHHHhhcc------CceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeeccccccccc
Q 038416          122 EARHYDLLPEKRWEVDLDGVEALADE------NTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAF  195 (387)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~  195 (387)
                      +++++.+..++++.++.+.+|++...      +.+.|+++||+||.|++++++++..+.++|.++|+.+|+||+|++-+|
T Consensus       194 eivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF  273 (471)
T KOG0256|consen  194 EIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVF  273 (471)
T ss_pred             eEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhccccc
Confidence            99999998889999999999987743      568899999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccccC-----CCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhhccCCcchHHHHHHHH
Q 038416          196 GSTPYVPMGVFG-----SIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPR  270 (387)
Q Consensus       196 ~~~~~~~~~~~~-----~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (387)
                      +...+.++.++.     ..+++.++.|+||.||+||+|+|.+...+       .++....++... ....++..|+.+..
T Consensus       274 ~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~n-------e~VvsaA~kmss-f~~vSs~tQ~~la~  345 (471)
T KOG0256|consen  274 DKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNN-------EDVVSAATKMSS-FGLVSSQTQYLLAS  345 (471)
T ss_pred             CccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecC-------hHHHHHHHHHhh-ccCCcHHHHHHHHH
Confidence            988887765432     34578999999999999999999999865       246666665543 56788899999999


Q ss_pred             Hhhhcc--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccC-CCcHHHHHHHHHHhcCeEEE
Q 038416          271 IVDETN--EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLED-IGDDLEFCLKLAKEESVIIL  347 (387)
Q Consensus       271 ~l~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~  347 (387)
                      +|.+..  +.++.+..++++.+..++.+.|+++ |+.+. ...+|.|+|+++.+..-+. +....++...++.+-++.+.
T Consensus       346 LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~l-gI~cl-~s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlS  423 (471)
T KOG0256|consen  346 LLSDEEFTREYLRENNKRLRIRHRYIVEGLKAL-GIPCL-KSNAGLFCWVDLRKLLTSLTFEGELELWERILDNVKLNLS  423 (471)
T ss_pred             HhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhc-CCcee-ecCCeeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccccC
Confidence            998732  5788999999999999999999999 88865 8899999999987643221 22234566667777799999


Q ss_pred             cCCccCC--CCeEEEEeeCChHh-HHHHHHHHHHHHHHhh
Q 038416          348 PGRTVGM--KNWLRIAFAAEPAT-LEDGLERIKAFCQRHA  384 (387)
Q Consensus       348 ~g~~~~~--~~~~Ri~~~~~~e~-~~~~~~~l~~~~~~~~  384 (387)
                      ||..|..  ++|||++++...++ ++-++++|++.+..+.
T Consensus       424 pG~s~~C~EpGWFRvcFAn~~~~t~~~am~Ri~~~~~~~~  463 (471)
T KOG0256|consen  424 PGSSCHCHEPGWFRVCFANMSEETLEVAMRRLKQFLDSQV  463 (471)
T ss_pred             CCCcceecCCCeEEEEeccCCHHHHHHHHHHHHHHHHhhh
Confidence            9998876  79999999876555 4449999999987654

>PLN02397 aspartate transaminase

Probab=100.00  E-value=4.4e-41  Score=314.82  Aligned_cols=341  Identities=16%  Similarity=0.157  Sum_probs=251.6

Q ss_pred             cccCCCCCCCCCCCCCCCc----HHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCE-----EEc
Q 038416            9 TRHSPWPRRPLGVSLLSDS----TVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDV-----YLT   79 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~----~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i-----~~~   79 (387)
                      .+++...|..   ++...+    +.+.++....+......+|++..|.++||+++++|+.+.......+++|     +.+
T Consensus        49 ~~l~l~~g~~---p~~~~~p~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g  125 (423)
T PLN02397         49 VKLNLGVGAY---RTEEGKPVVLNVVRKAEQRLLAGSRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSG  125 (423)
T ss_pred             ceEeccccee---eCCCCCcccchHHHHHHHHhhccCCCCCCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccc
Confidence            4455556541   233333    4555555444443444579999999999999999996544323333343     223


Q ss_pred             CChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc---cCceEEEEeC
Q 038416           80 LGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD---ENTVAIVIIN  156 (387)
Q Consensus        80 ~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~  156 (387)
                      +|+. ++...+..++.+||+|++++|+|+.|...++  ..|.+++.+++...+++++|++.+++.+.   ++++++++++
T Consensus       126 ~Ga~-~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~--~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~  202 (423)
T PLN02397        126 TGSL-RLGAEFLARFYPGSTIYIPNPTWGNHHNIFR--DAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHAC  202 (423)
T ss_pred             hHHH-HHHHHHHHHhCCCCEEEEeCCCchhHHHHHH--HcCCeEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCC
Confidence            3332 3444444445699999999999999999999  99999999988544457899998888764   4678888899


Q ss_pred             CCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCC--CCccccccC-CCccEEEEecCcccccccccceEEEE
Q 038416          157 PGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGST--PYVPMGVFG-SIVPVITLGSISKRWIVPGWRLGWLV  233 (387)
Q Consensus       157 p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~--~~~~~~~~~-~~~~~~~i~s~sK~~~~~g~r~G~i~  233 (387)
                      ||||||.+++.+++++|+++|++||++||+||+|.++.+++.  ...++..+. ..+++++++||||.|+++|+|+||++
T Consensus       203 P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v  282 (423)
T PLN02397        203 AHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALS  282 (423)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEE
Confidence            999999999999999999999999999999999999988541  222332332 22469999999999999999999996


Q ss_pred             --eeCCCCcccchhHHH----HHHhhhh-ccCCcchHHHHHHHHHhhhcc--HHH---HHHHHHHHHHHHHHHHHHhhcC
Q 038416          234 --TSDPNGILQNSGFVD----SIKGCLN-AASHPVTFIQAAVPRIVDETN--EAF---FAKIIGLLKETADICYERIKEI  301 (387)
Q Consensus       234 --~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~l~~~~--~~~---~~~~~~~~~~~~~~~~~~l~~~  301 (387)
                        +++       ++.++    .+..... ...+++.+.|.++..+|....  +.+   +++..+.++++++.+.+.|+++
T Consensus       283 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~  355 (423)
T PLN02397        283 VVCKS-------ADVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEAR  355 (423)
T ss_pred             EEeCC-------HHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              322       13333    3333322 234567788888888887531  233   6778889999999999999988


Q ss_pred             C---CCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee-CChHhHHHHHHHHH
Q 038416          302 P---CITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA-AEPATLEDGLERIK  377 (387)
Q Consensus       302 ~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~-~~~e~~~~~~~~l~  377 (387)
                      +   ++.++ .|++|+|+|++++          .+++..|++++||.+.++      +  ||+++ .+++++++++++|+
T Consensus       356 ~~~~~~~~~-~p~gg~fl~~~l~----------~~~~~~Ll~~~~V~v~~~------~--Ri~~~~~~~~~i~~~~~~i~  416 (423)
T PLN02397        356 GSPGDWSHI-TKQIGMFSFTGLN----------KEQVDRMTKEYHIYMTRD------G--RISMAGLSSKNVPYLADAIH  416 (423)
T ss_pred             CCCCCCCcc-cCCceEEEecCCC----------HHHHHHHHHhCCEEECCC------C--eEEEeeCCHHHHHHHHHHHH
Confidence            2   26633 7999999998774          358889999999999753      2  99996 89999999999999


Q ss_pred             HHHH
Q 038416          378 AFCQ  381 (387)
Q Consensus       378 ~~~~  381 (387)
                      +++.
T Consensus       417 ~~~~  420 (423)
T PLN02397        417 AVVT  420 (423)
T ss_pred             HHHh
Confidence            9874

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=5.6e-41  Score=309.08  Aligned_cols=326  Identities=18%  Similarity=0.313  Sum_probs=261.4

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      ..++++.|.+    ++++++.+.+++.+.+... ...|++. +..+||+++|+++      ++++++|++|+|+++++..
T Consensus        25 ~~i~l~~~~~----~~~~~~~~~~a~~~~~~~~-~~~y~~~-~~~~lr~aia~~~------~~~~~~I~it~G~~~al~~   92 (353)
T PRK05387         25 KLIKLNTNEN----PYPPSPKVLEAIRAALGDD-LRLYPDP-NADALRQAIAAYY------GLDPEQVFVGNGSDEVLAH   92 (353)
T ss_pred             ceeeccCCCC----CCCCCHHHHHHHHHHhhhh-hhcCCCC-cHHHHHHHHHHHh------CCCHHHEEEcCCHHHHHHH
Confidence            3466667665    6788999999999877643 4578764 6699999999998      4688999999999999999


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      ++++++++||.|++++|+|+.+...++  ..|.++..+++.  +++.+|++++++    .++++++++||||||.++|.+
T Consensus        93 ~~~~l~~~gd~vlv~~P~y~~~~~~~~--~~g~~~~~v~~~--~~~~~d~~~l~~----~~~~v~~~~P~NPtG~~~~~~  164 (353)
T PRK05387         93 AFLAFFNHDRPLLFPDITYSFYPVYAG--LYGIPYEEIPLD--DDFSIDVEDYLR----PNGGIIFPNPNAPTGIALPLA  164 (353)
T ss_pred             HHHHhcCCCCEEEEeCCCHHHHHHHHH--HcCCEEEEeecC--CCCCCCHHHHHh----cCCEEEEeCCCCCCCCCCCHH
Confidence            999999999999999999999998888  899999999874  356789998864    467889999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD  248 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~  248 (387)
                      ++++|+++++  ++++|+||+|..+.  +....++  ....+++++++||||.|+++|+|+||+++++        ++++
T Consensus       165 ~~~~l~~~~~--~~~livDe~y~~~~--~~~~~~~--~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~--------~~~~  230 (353)
T PRK05387        165 EIERILAANP--DSVVVIDEAYVDFG--GESAIPL--IDRYPNLLVVQTFSKSRSLAGLRVGFAIGHP--------ELIE  230 (353)
T ss_pred             HHHHHHHhCC--CcEEEEeCcccccC--CcchHHH--HhhCCCEEEEEehhHhhcchhhhceeeecCH--------HHHH
Confidence            9999998654  89999999998753  3222222  2234578999999999999999999999865        6888


Q ss_pred             HHHhhhhc--cCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccccc
Q 038416          249 SIKGCLNA--ASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE  326 (387)
Q Consensus       249 ~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~  326 (387)
                      ++......  ..+.+.+.|.++..++.+  .+++++..+++.++++.+.+.|+++ ++. + .|.+++|+|++++.    
T Consensus       231 ~l~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~~~~~~~~~~~~~----  301 (353)
T PRK05387        231 ALNRVKNSFNSYPLDRLAQAGAIAAIED--EAYFEETRAKVIATRERLVEELEAL-GFE-V-LPSKANFVFARHPS----  301 (353)
T ss_pred             HHHHhhccCCCCCcCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHC-CCe-E-CCCcCcEEEEECCC----
Confidence            88766532  346778899988888864  4567788888999999999999988 676 4 46678899988763    


Q ss_pred             CCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHH
Q 038416          327 DIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       327 ~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~  381 (387)
                        .+..++.+.+ .++||.+.+.......+++|++++ +.++++++++.|+++++
T Consensus       302 --~~~~~~~~~l-~~~gi~v~~~~~~~~~~~iRis~~-~~~~~~~~~~~L~~~~~  352 (353)
T PRK05387        302 --HDAAELAAKL-RERGIIVRHFNKPRIDQFLRITIG-TDEEMEALVDALKEILA  352 (353)
T ss_pred             --CCHHHHHHHH-HHCCEEEEECCCCCCCCeEEEEeC-CHHHHHHHHHHHHHHhh
Confidence              1456777776 567999975433333679999997 56889999999988764

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.6e-40  Score=305.08  Aligned_cols=315  Identities=17%  Similarity=0.313  Sum_probs=250.5

Q ss_pred             CCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEE
Q 038416           23 LLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILI  102 (387)
Q Consensus        23 ~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~  102 (387)
                      ++++|+.+.+++.+.+.......|++. +..++|+.+++++      ++++++|++|+|+++++..++.+++++||+|++
T Consensus        33 ~~~~p~~~~~a~~~~~~~~~~~~y~~~-~~~~lr~~ia~~~------~~~~~~i~it~G~~~~l~~~~~~l~~~gd~Vlv  105 (351)
T PRK14807         33 PFELPEEVIKNIQEIVKSSQVNIYPDP-TAEKLREELARYC------SVVPTNIFVGNGSDEIIHLIMLAFINKGDVVIY  105 (351)
T ss_pred             CCCCCHHHHHHHHHHhhcCcccCCCCc-cHHHHHHHHHHHh------CCCcccEEEecCHHHHHHHHHHHhcCCCCEEEE
Confidence            789999999999988765445678764 4689999999998      568899999999999999999999999999999


Q ss_pred             cCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCccccCCHHHHHHHHHHHHhcC
Q 038416          103 PRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCGNVFSYQHLQKIARTARNLG  181 (387)
Q Consensus       103 ~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~  181 (387)
                      ++|+|..+...++  ..|.+++.++++  .++.+|++++++++++ +++++++++|+||||..++.++++++++   +++
T Consensus       106 ~~p~y~~~~~~~~--~~g~~~~~v~~~--~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~---~~~  178 (351)
T PRK14807        106 PHPSFAMYSVYSK--IAGAVEIPVKLK--EDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIKIIE---KSR  178 (351)
T ss_pred             eCCChHHHHHHHH--HcCCeEEEeecC--CCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHH---hCC
Confidence            9999999988888  899999999875  3467899999999875 8899999999999999999777776665   556


Q ss_pred             cEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhhccCCcc
Q 038416          182 IIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPV  261 (387)
Q Consensus       182 ~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (387)
                      .++|+||+|.++.  +....++  +...+++++++||||.|+++|+|+||+++++        ++++.+..... ....+
T Consensus       179 ~~~ivDe~y~~~~--~~~~~~~--~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~--------~~~~~~~~~~~-~~~~~  245 (351)
T PRK14807        179 GIVVVDEAYFEFY--GNTIVDV--INEFENLIVLRTLSKAFGLAGLRVGYAVANE--------NILKYLNLVKS-PYNIN  245 (351)
T ss_pred             CEEEEeCcchhhc--ccchHHH--hhhCCCEEEEecchHhcccchhceeeeecCH--------HHHHHHHHccC-CCCcC
Confidence            7899999998763  3222221  2334679999999999999999999999865        78888876544 35567


Q ss_pred             hHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHh
Q 038416          262 TFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKE  341 (387)
Q Consensus       262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~  341 (387)
                      .+.|.++..++++   .++.+..+.+.++++.+.+.|++++++. + .|.+|+|+|++++        +..++...+ .+
T Consensus       246 ~~~q~~~~~~l~~---~~~~~~~~~~~~~r~~l~~~l~~~~g~~-~-~~~~~~~~~i~~~--------~~~~~~~~l-~~  311 (351)
T PRK14807        246 SLSQVIALKVLRT---GVLKERVNYILNERERLIKELSKIPGIK-V-YPSKTNFILVKFK--------DADYVYQGL-LE  311 (351)
T ss_pred             HHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHhCCCcE-E-CcCCccEEEEEcC--------CHHHHHHHH-HH
Confidence            8899999988875   4567777788888888999998887877 4 4666889998886        345565555 56


Q ss_pred             cCeEEEcCCc-cCCCCeEEEEeeCChHhHHHHHHHHHHH
Q 038416          342 ESVIILPGRT-VGMKNWLRIAFAAEPATLEDGLERIKAF  379 (387)
Q Consensus       342 ~gi~v~~g~~-~~~~~~~Ri~~~~~~e~~~~~~~~l~~~  379 (387)
                      +||.+.++.. ++..+++||+++. .++.+++++.|+++
T Consensus       312 ~gV~v~~~~~~~~~~~~iRis~~~-~~~~~~l~~~l~~~  349 (351)
T PRK14807        312 RGILVRDFSKVEGLEGALRITVSS-CEANDYLINGLKEL  349 (351)
T ss_pred             CCEEEEECCCCCCCCCeEEEEcCC-HHHHHHHHHHHHHh
Confidence            6999988653 3446899999975 34455555555543

>PRK09105 putative aminotransferase; Provisional

Probab=100.00  E-value=8.8e-41  Score=307.88  Aligned_cols=313  Identities=18%  Similarity=0.182  Sum_probs=251.8

Q ss_pred             CCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEE
Q 038416           23 LLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILI  102 (387)
Q Consensus        23 ~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~  102 (387)
                      ++++|+.+.+++.+.....  ..|++. +..+||+.|++++      ++++++|++|+|+++++..++.+++++||+|++
T Consensus        54 ~~~~~~~~~~a~~~~~~~~--~~Y~~~-~~~~Lr~aia~~~------~v~~e~I~it~Gs~~ai~~~~~~l~~~gd~Vli  124 (370)
T PRK09105         54 PLGPSPAARDAAARSAALS--GRYDLE-LEDDLRTLFAAQE------GLPADHVMAYAGSSEPLNYAVLAFTSPTAGLVT  124 (370)
T ss_pred             CCCCCHHHHHHHHHHHHHh--cCCCCc-hHHHHHHHHHHHh------CcChhhEEEcCChHHHHHHHHHHHcCCCCEEEE
Confidence            6889999999999887542  468765 4889999999988      568999999999999999999999999999999


Q ss_pred             cCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCc
Q 038416          103 PRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGI  182 (387)
Q Consensus       103 ~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~  182 (387)
                      ++|+|+.+...++  ..|.+++.+++..  ++.+|++++++. .++++++++++||||||.+++.++++++++.++ +++
T Consensus       125 ~~P~y~~~~~~~~--~~g~~~~~v~~~~--~~~~d~~~l~~~-~~~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~-~~~  198 (370)
T PRK09105        125 ADPTYEAGWRAAD--AQGAPVAKVPLRA--DGAHDVKAMLAA-DPNAGLIYICNPNNPTGTVTPRADIEWLLANKP-AGS  198 (370)
T ss_pred             eCCChHHHHHHHH--HcCCeEEEecCCC--CCCCCHHHHHhc-CCCCCEEEEeCCCCCCCcCcCHHHHHHHHHhCC-CCc
Confidence            9999999999999  9999999998753  567899999876 467899999999999999999999999999764 589


Q ss_pred             EEeecccccccccCCCCCcccccc-CCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhhccCCcc
Q 038416          183 IVIADEVYNHLAFGSTPYVPMGVF-GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPV  261 (387)
Q Consensus       183 ~li~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (387)
                      ++|+||+|..+..  . . +...+ +..+++++++||||.||++|+|+||+++++        ++++.+... . ...++
T Consensus       199 ~lIvDEaY~~f~~--~-~-s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~--------~~i~~l~~~-~-~~~~~  264 (370)
T PRK09105        199 VLLVDEAYIHFSD--A-P-SVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARP--------DLLAKLARF-G-HNPLP  264 (370)
T ss_pred             EEEEECchHHhcc--C-c-chHHHHhhCCCEEEEecccHhhcCCccceeeeecCH--------HHHHHHHhc-C-CCCcC
Confidence            9999999987642  1 1 22222 234679999999999999999999999875        688877765 2 34467


Q ss_pred             hHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHh
Q 038416          262 TFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKE  341 (387)
Q Consensus       262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~  341 (387)
                      .+.+.++..++.+  ..++++..+.+.++++.+.+.|+++ ++. +..++++ |++++++.       +..++...+++ 
T Consensus       265 ~~~~~aa~~~L~~--~~~~~~~~~~~~~~r~~l~~~L~~~-g~~-~~~~~~~-f~~~~~~~-------~~~~l~~~L~~-  331 (370)
T PRK09105        265 VPAAAAGLASLRD--PKLVPQRRAENAAVREDTIAWLKKK-GYK-CTPSQAN-CFMVDVKR-------PAKAVADAMAK-  331 (370)
T ss_pred             HHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHC-CCC-cCCCCCc-EEEEeCCC-------CHHHHHHHHHH-
Confidence            7778888777764  5678888899999999999999987 777 4356655 44666652       45678887765 


Q ss_pred             cCeEEEcCCccC-CCCeEEEEeeCChHhHHHHHHHHHHHH
Q 038416          342 ESVIILPGRTVG-MKNWLRIAFAAEPATLEDGLERIKAFC  380 (387)
Q Consensus       342 ~gi~v~~g~~~~-~~~~~Ri~~~~~~e~~~~~~~~l~~~~  380 (387)
                      +||.+.  ..|. .++++||+++. +++++++++.|++.+
T Consensus       332 ~gI~v~--~~~~~~~~~~Ris~~~-~~~~~~l~~al~~~~  368 (370)
T PRK09105        332 QGVFIG--RSWPIWPNWVRVTVGS-EEEMAAFRSAFAKVM  368 (370)
T ss_pred             CCcEEe--cCCCCCCCeEEEEcCC-HHHHHHHHHHHHHHh
Confidence            499883  3343 36899999985 566777777776654

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.5e-40  Score=306.12  Aligned_cols=303  Identities=18%  Similarity=0.329  Sum_probs=243.2

Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCC-CeEEEcCCCCcchHHHhhccCCCc
Q 038416           43 YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPG-ANILIPRPGYPLYEIHAAGSNNNL  121 (387)
Q Consensus        43 ~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g-~~vl~~~p~~~~~~~~~~~~~~g~  121 (387)
                      ...|+.. +..+||+.+++++      ++++++|++|+|+++++..++.+++.+| +.|+++.|+|..+...++  ..|.
T Consensus        53 ~~~Y~~~-~~~~lr~~ia~~~------~~~~~~I~~t~G~~~~l~~~~~~~~~~g~~~vlv~~p~y~~~~~~~~--~~g~  123 (364)
T PRK04781         53 TRRYPDP-QPPGLRSALAALY------GCAPEQLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVFGMYAVCAR--LQNA  123 (364)
T ss_pred             hccCCCC-CHHHHHHHHHHHh------CcChHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHH--HcCC
Confidence            3568875 4689999999998      4688999999999999999999999888 799999999998888888  8999


Q ss_pred             eeeeeccCC-CCCccCChhhHHHhh-ccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCC
Q 038416          122 EARHYDLLP-EKRWEVDLDGVEALA-DENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTP  199 (387)
Q Consensus       122 ~~~~~~~~~-~~~~~~~~~~l~~~~-~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~  199 (387)
                      +++.+++.. ++++.+|++++++.+ .++++++++++|+||||..++.++++++++.|+ ++++||+||+|.+|.+..  
T Consensus       124 ~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~-~~~~iI~Deay~~f~~~~--  200 (364)
T PRK04781        124 PLVEVPLVDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQ-GKALVVVDEAYGEFSDVP--  200 (364)
T ss_pred             EEEEEecCCCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCC-CCcEEEEeCcchhhcCCc--
Confidence            999999843 346778899886544 678999999999999999999999999999986 479999999999987432  


Q ss_pred             CccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhhccCCcchHHHHHHHHHhhhccHHH
Q 038416          200 YVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAF  279 (387)
Q Consensus       200 ~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  279 (387)
                       ......+..+++++++||||.|+++|+|+||+++++        ++++.+.+... ..+.+.+.|.++..+|.+....+
T Consensus       201 -~~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~~--------~l~~~l~~~~~-~~~~~~~~~~~a~~~l~~~~~~~  270 (364)
T PRK04781        201 -SAVGLLARYDNLAVLRTLSKAHALAAARIGSLIANA--------ELIAVLRRCQA-PYPVPTPCAALAEQALSAPALAV  270 (364)
T ss_pred             -chHHHHhhCCCEEEEecChhhcccccceeeeeeCCH--------HHHHHHHhccC-CCCCCHHHHHHHHHHHhcccHHH
Confidence             112222344679999999999999999999999875        78888887654 35677888888888887654456


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCcc-CCCCeE
Q 038416          280 FAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTV-GMKNWL  358 (387)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~-~~~~~~  358 (387)
                      ..+..+.+.++++.+.+.|+.++++..+ .|.+|+|+|++++        +..++...+ +++||.+.+|..| +.++++
T Consensus       271 ~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~p~~g~f~~~~~~--------~~~~~~~~l-~~~gI~v~~~~~~~~~~~~~  340 (364)
T PRK04781        271 TARRVAEVRAERERLHAALAQLPGVRRV-YPSQGNFLLVRFD--------DAEAAFQAL-LAAGVVVRDQRAAPRLSDAL  340 (364)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCeE-CCCCCcEEEEEcC--------CHHHHHHHH-HHCCeEEeeCCCCCCCCCeE
Confidence            6777778899999999999988776534 6788999999886        244555554 6789999999765 346899


Q ss_pred             EEEeeCChHhHHHHHHHHHH
Q 038416          359 RIAFAAEPATLEDGLERIKA  378 (387)
Q Consensus       359 Ri~~~~~~e~~~~~~~~l~~  378 (387)
                      ||+++. +++.+++++.|++
T Consensus       341 Ris~~~-~~~~~~l~~al~~  359 (364)
T PRK04781        341 RITLGT-PEQNDRVLAALQR  359 (364)
T ss_pred             EEeCCC-HHHHHHHHHHHHH
Confidence            999975 3445555555544

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=100.00  E-value=1.6e-40  Score=305.31  Aligned_cols=328  Identities=21%  Similarity=0.363  Sum_probs=266.6

Q ss_pred             ccccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHH
Q 038416            6 GQETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQA   85 (387)
Q Consensus         6 g~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a   85 (387)
                      |.+..++++.|++    ++++|+.+.+++.++...  ...|+...+ .++|+.+++++      ++++++|++++|++++
T Consensus        17 ~~~~~i~l~~~~~----~~~~~~~~~~a~~~~~~~--~~~y~~~~~-~~lr~~ia~~~------~~~~~~i~~~~G~~~~   83 (346)
T TIGR01141        17 GGKEVIKLNSNEN----PFGPPPKAKEALRAEADK--LHRYPDPDP-AELKQALADYY------GVDPEQILLGNGSDEI   83 (346)
T ss_pred             CCCceEEccCCCC----CCCCCHHHHHHHHHhHHH--hhcCCCCCH-HHHHHHHHHHh------CcChHHEEEcCCHHHH
Confidence            3455677777766    688999999999998643  346777555 89999999999      3678899999999999


Q ss_pred             HHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccC
Q 038416           86 IEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVF  165 (387)
Q Consensus        86 ~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~  165 (387)
                      +..++.+++++||+|+++.|+|..+...+.  ..|.++..+++..  ++.+|++++++++++++++|++++|+||||..+
T Consensus        84 l~~~~~~l~~~gd~v~~~~p~y~~~~~~~~--~~g~~~~~~~~~~--~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~  159 (346)
T TIGR01141        84 IELLIRAFLEPGDAVLVPPPTYSMYEISAK--IHGAEVVKVPLDE--DGQLDLEDILVAIDDKPKLVFLCSPNNPTGNLL  159 (346)
T ss_pred             HHHHHHHhcCCCCEEEEcCCCHHHHHHHHH--HcCCeEEEeccCC--CCCCCHHHHHHhcCCCCCEEEEeCCCCCCCCCC
Confidence            999999999999999999999998888888  8999999998854  356899999998888899999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchh
Q 038416          166 SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSG  245 (387)
Q Consensus       166 ~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~  245 (387)
                      +.++++++++.|+ +++++|+|++|+.+...+... +  ......++++++|+||+|+++|+|+||+++++        +
T Consensus       160 ~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~~~~-~--~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~--------~  227 (346)
T TIGR01141       160 SRSDIEAVLERTP-EDALVVVDEAYGEFSGEPSTL-P--LLAEYPNLIVLRTLSKAFGLAGLRIGYAIANA--------E  227 (346)
T ss_pred             CHHHHHHHHHhCC-CCcEEEEECchhhhcCCccHH-H--HHhhCCCEEEEehhhHhhhchhhhceeeecCH--------H
Confidence            9999999999887 799999999999765432111 1  11222468999999999999999999999865        6


Q ss_pred             HHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccc
Q 038416          246 FVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML  325 (387)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~  325 (387)
                      ++++++.... ..+.++++|.++..+++..  .++.+..+.++++++.+++.|++++++. + .|.+|.|+|+.++.   
T Consensus       228 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~-~~~~g~~~~~~~~~---  299 (346)
T TIGR01141       228 IIDALNKVRA-PFNLSRLAQAAAIAALRDD--DFIEKTVEEINAERERLYDGLKKLPGLE-V-YPSDANFVLIRFPR---  299 (346)
T ss_pred             HHHHHHhccC-CCCCCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHhcCCCE-E-CCCcCCEEEEecCC---
Confidence            7888776543 3556788888888888753  3678888999999999999999887877 4 45667899988763   


Q ss_pred             cCCCcHHHHHHHHHHhcCeEEEcCCccCC-CCeEEEEeeCChHhHHHHHHHH
Q 038416          326 EDIGDDLEFCLKLAKEESVIILPGRTVGM-KNWLRIAFAAEPATLEDGLERI  376 (387)
Q Consensus       326 ~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-~~~~Ri~~~~~~e~~~~~~~~l  376 (387)
                          +..++...+ .++||.+.||..|+. .+++|++++ ++++++++++.|
T Consensus       300 ----~~~~~~~~L-~~~gI~v~~g~~f~~~~~~iRls~~-~~~~i~~~~~~l  345 (346)
T TIGR01141       300 ----DADALFEAL-LEKGIIVRDLNSYPGLPNCLRITVG-TREENDRFLAAL  345 (346)
T ss_pred             ----CHHHHHHHH-HHCCeEEEeCCCcCCCCCeEEEecC-CHHHHHHHHHHh
Confidence                355676666 467999999987744 689999987 678899888776

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=6.4e-41  Score=307.27  Aligned_cols=298  Identities=20%  Similarity=0.372  Sum_probs=243.4

Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCC-CeEEEcCCCCcchHHHhhccCCCc
Q 038416           43 YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPG-ANILIPRPGYPLYEIHAAGSNNNL  121 (387)
Q Consensus        43 ~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g-~~vl~~~p~~~~~~~~~~~~~~g~  121 (387)
                      .+.|+.. ...+|++.+++++      ++++++|++|+|+++++..++++++++| |+|+++.|+|..|...++  ..|.
T Consensus        51 ~~~Yp~~-~~~~l~~~~a~~~------g~~~~~I~~~~Gs~e~i~~~~~~~~~~g~~~vli~~P~y~~y~~~~~--~~G~  121 (351)
T PRK01688         51 LNRYPEC-QPKAVIENYAAYA------GVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAE--TIGV  121 (351)
T ss_pred             cccCCCC-ChHHHHHHHHHHh------CCCHHHEEEcCCHHHHHHHHHHHhcCCCCCEEEEcCCCHHHHHHHHH--HcCC
Confidence            4578764 4579999999998      5789999999999999999999999887 899999999999999999  9999


Q ss_pred             eeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCc
Q 038416          122 EARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYV  201 (387)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~  201 (387)
                      +++.++++  .++.+|++++++++ +++++++++|||||||..++.+++++|++.|++ +.++|+||+|.+|....   .
T Consensus       122 ~~~~v~~~--~~~~~d~~~l~~~~-~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~-~~~vivDEay~~f~~~~---s  194 (351)
T PRK01688        122 EIRTVPTL--DNWQLDLPAIADNL-DGVKVVYVCSPNNPTGNLINPQDLRTLLELTRG-KAIVVADEAYIEFCPQA---S  194 (351)
T ss_pred             EEEEeecC--CCCCCCHHHHHHhc-cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECchhhcCCCC---C
Confidence            99999885  35789999999987 588999999999999999999999999999986 68899999999876321   1


Q ss_pred             cccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHH
Q 038416          202 PMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFA  281 (387)
Q Consensus       202 ~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  281 (387)
                      ....+...+++++++||||+||++|+|+||+++++        ++++.+.+... .+..+.+.+.++..+|.+...+++.
T Consensus       195 ~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~~~--------~~i~~l~~~~~-~~~v~~~~~~~a~~~L~~~~~~~~~  265 (351)
T PRK01688        195 LAGWLAEYPHLVILRTLSKAFALAGLRCGFTLANE--------EVINLLLKVIA-PYPLSTPVADIAAQALSPQGIAAMR  265 (351)
T ss_pred             hHHHHhhCCCEEEEecchHhhcCHHHHHhHHhCCH--------HHHHHHHhccC-CCCCCHHHHHHHHHHHhcchHHHHH
Confidence            11112334689999999999999999999999865        78888876643 3456677777777788754446788


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCcc-CCCCeEEE
Q 038416          282 KIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTV-GMKNWLRI  360 (387)
Q Consensus       282 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~-~~~~~~Ri  360 (387)
                      +..+.+.++++.+.+.|++++++..+ .|.+++|+|++++        +..++...++ ++||.+.++..+ +..+++||
T Consensus       266 ~~~~~~~~~r~~l~~~L~~~~~~~~~-~ps~~nfi~~~~~--------~~~~l~~~L~-~~gi~vr~~~~~~~~~~~iRi  335 (351)
T PRK01688        266 ERVAEINANRQWLIAALKEIPCVEQV-FDSETNYILARFT--------ASSAVFKSLW-DQGIILRDQNKQPGLSNCLRI  335 (351)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCeE-CCCCCcEEEEEcC--------CHHHHHHHHH-HCCeEEEECCCcCCCCCeEEE
Confidence            88888999999999999988776534 6778999998875        3456777665 669999976544 55789999


Q ss_pred             EeeCChHhHHHHHHHH
Q 038416          361 AFAAEPATLEDGLERI  376 (387)
Q Consensus       361 ~~~~~~e~~~~~~~~l  376 (387)
                      +++. .++.+++++.|
T Consensus       336 s~~~-~~e~~~l~~al  350 (351)
T PRK01688        336 TIGT-REECQRVIDAL  350 (351)
T ss_pred             eCCC-HHHHHHHHHhh
Confidence            9984 57888887766

>PRK07908 hypothetical protein; Provisional

Probab=100.00  E-value=4.9e-39  Score=295.22  Aligned_cols=322  Identities=18%  Similarity=0.212  Sum_probs=251.4

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      ..++++.+.+    ++++|+.+.+++.+.+..  ...|++..|..++|+.+++++      ++++++|++|+|+++++..
T Consensus        23 ~~~~l~~~~~----~~~~~~~~~~~~~~~~~~--~~~Y~~~~g~~~lr~aia~~~------~~~~~~I~it~Ga~~al~~   90 (349)
T PRK07908         23 GLLDFAVNVR----HDTPPEWLRERLAARLGD--LAAYPSTEDERRARAAVAARH------GRTPDEVLLLAGAAEGFAL   90 (349)
T ss_pred             CeEEecCCCC----CCCCCHHHHHHHHHHhhH--hhcCCCccchHHHHHHHHHHh------CcChhhEEECCCHHHHHHH
Confidence            4555555544    688999999999998764  357888789999999999998      4688999999999999999


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      ++. + ++ +.++++.|+|..+...++  ..|.+++.++++.  ++.+|++.+    +++++++++++|+||||.++|.+
T Consensus        91 ~~~-l-~~-~~viv~~P~y~~~~~~~~--~~G~~i~~v~~~~--~~~~d~~~l----~~~~~~i~l~np~NPTG~~~~~~  159 (349)
T PRK07908         91 LAR-L-RP-RRAAVVHPSFTEPEAALR--AAGIPVHRVVLDP--PFRLDPAAV----PDDADLVVIGNPTNPTSVLHPAE  159 (349)
T ss_pred             HHh-c-CC-CeEEEeCCCChHHHHHHH--HcCCEEEeeccCc--ccCcChhHh----ccCCCEEEEcCCCCCCCCCcCHH
Confidence            998 4 56 467788999999998888  8999999998853  267788754    45788999999999999999976


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD  248 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~  248 (387)
                      ++.   ++|+ ++.++|+||+|+++.. +. ..++...+ .+++++++||||.|+++|+|+||+++++        ++++
T Consensus       160 ~l~---~l~~-~~~~iIvDe~y~~~~~-~~-~~~l~~~~-~~~~i~i~S~SK~~~l~GlRiG~~~~~~--------~~~~  224 (349)
T PRK07908        160 QLL---ALRR-PGRILVVDEAFADAVP-GE-PESLAGDD-LPGVLVLRSLTKTWSLAGLRVGYALGAP--------DVLA  224 (349)
T ss_pred             HHH---HHHh-cCCEEEEECcchhhcc-CC-cccccccc-CCCEEEEeecccccCCccceeeeeecCH--------HHHH
Confidence            554   4554 4788999999998753 32 33343332 3468999999999999999999999865        6888


Q ss_pred             HHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCC
Q 038416          249 SIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDI  328 (387)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  328 (387)
                      .+..... ....+++.+.++..++......++++..+.++++++.+.+.|+++ ++. +..|.+|+|+|++++.      
T Consensus       225 ~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~-~~~p~~g~~~~~~~~~------  295 (349)
T PRK07908        225 RLTRGRA-HWPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAV-GAR-VVDPAAAPFVLVRVPD------  295 (349)
T ss_pred             HHHhcCC-CCCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhC-CcE-eccCCCceEEEEECCc------
Confidence            8776543 345666777777777764345677888899999999999999988 777 4467889999998862      


Q ss_pred             CcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHH
Q 038416          329 GDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       329 ~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~  381 (387)
                        ..++ ...++++||.+.||..|..  +++|||+++ ++++++++++.|++++.
T Consensus       296 --~~~~-~~~l~~~gI~v~~g~~f~~~~~~~vRis~~-~~~~~~~l~~al~~~~~  346 (349)
T PRK07908        296 --AELL-RKRLRERGIAVRRGDTFPGLDPDYLRLAVR-PRAEVPVLVQALAEILK  346 (349)
T ss_pred             --HHHH-HHHHHhCCEEEEECCCCCCCCCCeEEEEeC-CCccHHHHHHHHHHHHh
Confidence              3344 4455788999999998853  689999995 45677777777766553

>PRK03321 putative aminotransferase; Provisional

Probab=100.00  E-value=2e-39  Score=298.45  Aligned_cols=328  Identities=19%  Similarity=0.265  Sum_probs=259.0

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      .+++.+.+.+    .+++++.+.+++.+.+..  ...|+. .|..++|+.+++++      ++++++|++++|+++++..
T Consensus        23 ~~i~l~~~~~----~~~~~~~~~~a~~~~~~~--~~~y~~-~g~~~lr~~ia~~~------~~~~~~I~~~~G~~~~l~~   89 (352)
T PRK03321         23 GAIKLSSNET----PFGPLPSVRAAIARAAAG--VNRYPD-MGAVELRAALAEHL------GVPPEHVAVGCGSVALCQQ   89 (352)
T ss_pred             cceeccCCCC----CCCCCHHHHHHHHHHHHh--cCcCCC-CcHHHHHHHHHHHh------CcCHHHEEECCCHHHHHHH
Confidence            3455556555    677888999999988763  456764 68999999999999      4678899999999999999


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      ++..++++||+|+++.|+|..+...++  ..|.++..++++++  +.+|+++++++++++++++++++|+||||.++|.+
T Consensus        90 ~~~~~~~~gd~Vli~~p~y~~~~~~~~--~~g~~~~~v~~~~~--~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~  165 (352)
T PRK03321         90 LVQATAGPGDEVIFAWRSFEAYPILVQ--VAGATPVQVPLTPD--HTHDLDAMAAAITDRTRLIFVCNPNNPTGTVVTPA  165 (352)
T ss_pred             HHHHhcCCCCEEEeCCCCHHHHHHHHH--HcCCEEEEccCCCC--CCCCHHHHHHhhccCCCEEEEeCCCCCcCCCcCHH
Confidence            999999999999999999998888888  89999999987533  57899999999988999999999999999999988


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD  248 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~  248 (387)
                      ++.++++.+ ++++++|+|++|.++.+.+....++..+...+++++++|+||.|+++|+|+||+++++        ++++
T Consensus       166 ~l~~l~~~~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~--------~~~~  236 (352)
T PRK03321        166 ELARFLDAV-PADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGHP--------EVIA  236 (352)
T ss_pred             HHHHHHHhC-CCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCCH--------HHHH
Confidence            888888876 4799999999999988765433334444445689999999999999999999999875        7888


Q ss_pred             HHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCC
Q 038416          249 SIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDI  328 (387)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  328 (387)
                      .+.+.. ...+.+.+.|.++..++.. . +.+.+..+.+.++++.+.+.|++. ++. + .+.+|+|+|++++.      
T Consensus       237 ~~~~~~-~~~~~s~~~q~~a~~~l~~-~-~~~~~~~~~~~~~r~~~~~~L~~~-~~~-~-~~~~g~~i~i~l~~------  304 (352)
T PRK03321        237 ALRKVA-VPFSVNSLAQAAAIASLAA-E-DELLERVDAVVAERDRVRAALRAA-GWT-V-PPSQANFVWLPLGE------  304 (352)
T ss_pred             HHHHhc-CCCCCCHHHHHHHHHHhcC-H-HHHHHHHHHHHHHHHHHHHHHHHC-CCc-c-CCCCCCEEEEeCCC------
Confidence            887653 3467788888888777763 2 333445555566677788888887 666 3 44568899988752      


Q ss_pred             CcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHH
Q 038416          329 GDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       329 ~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~  381 (387)
                       +..++...+ +++||.+.+   |+ .+++||+++ +.++.++++++|.+++.
T Consensus       305 -~~~~~~~~l-~~~gI~v~~---~~-~~~iRi~~~-~~~~~~~~~~al~~~~~  350 (352)
T PRK03321        305 -RTADFAAAA-AEAGVVVRP---FA-GEGVRVTIG-APEENDAFLRAARAWRA  350 (352)
T ss_pred             -CHHHHHHHH-HHCCEEEEc---cC-CCcEEEeeC-CHHHHHHHHHHHHHHhc
Confidence             355677765 678999987   32 457999984 56677777777776553

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=5.7e-39  Score=292.27  Aligned_cols=295  Identities=17%  Similarity=0.203  Sum_probs=227.8

Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCce
Q 038416           43 YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLE  122 (387)
Q Consensus        43 ~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~  122 (387)
                      ...|+.. ...+||+.+++++      ++++++|++|+|+++++..++.. +++| .|++++|+|..|...++  ..|.+
T Consensus        34 ~~~Yp~~-~~~~lr~~ia~~~------~~~~~~I~it~Gs~~~l~~~~~~-~~~~-~vv~~~P~y~~y~~~~~--~~G~~  102 (332)
T PRK06425         34 ISIYPEI-SYTDIEDQIKIYT------QGLKIKVLIGPGLTHFIYRLLSY-INVG-NIIIVEPNFNEYKGYAF--THGIR  102 (332)
T ss_pred             cccCcCc-CHHHHHHHHHHHh------CCCcceEEECCCHHHHHHHHHHH-hCCC-cEEEeCCChHHHHHHHH--HcCCe
Confidence            3568764 6799999999999      56889999999999999999974 5676 57777999999999999  99999


Q ss_pred             eeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc
Q 038416          123 ARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP  202 (387)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~  202 (387)
                      ++.+|++.   +..|.+.+++   .+++++++++||||||.+++.+++++|+++|++++++||+||+|.+|.+++. ...
T Consensus       103 v~~vp~~~---~~~~~~~l~~---~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~-~~~  175 (332)
T PRK06425        103 ISALPFNL---INNNPEILNN---YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRA-EED  175 (332)
T ss_pred             EEEEeCCc---ccCcHHHHhh---cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccc-hhH
Confidence            99999853   2445555442   3789999999999999999999999999999999999999999999876532 111


Q ss_pred             ccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhhccCCcchHHHHHHHHHhhhcc-HHHHH
Q 038416          203 MGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETN-EAFFA  281 (387)
Q Consensus       203 ~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~  281 (387)
                      .......+++++++||||.|+++|+|+||+++++        ++++.+.+... ....+...+.    ++.... +.+++
T Consensus       176 ~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~--------~li~~l~~~~~-~~~~~~~~~~----~l~~~~~~~~~~  242 (332)
T PRK06425        176 VLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDD--------YNMKISRKITE-PWSVCDPAID----FIRSIDLDYVAK  242 (332)
T ss_pred             HHHhccCCCEEEEeecHHhcCCchhhheeeecCH--------HHHHHHHHcCC-CCccCHHHHH----HHHHhhhHHHHH
Confidence            2222233689999999999999999999999976        78887776533 2223333322    222222 34566


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEE
Q 038416          282 KIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLR  359 (387)
Q Consensus       282 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~R  359 (387)
                      +..+.++++++.+.+.|+++ ++..+ .+..|+|+|++++        ++.++...+++ +||.+.||..|+.  ++++|
T Consensus       243 ~~~~~~~~~r~~l~~~L~~~-g~~~~-~~~~g~f~~~~~~--------~~~~~~~~l~~-~gi~v~~~~~f~~~~~~~iR  311 (332)
T PRK06425        243 HSLDIMENERSYLINNLEAM-GFRAA-GDPSANFITFMIP--------DAHDFYSYLLK-NGILVRLLDDYECLGEQYIR  311 (332)
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CCEEC-CCCCceEEEEEcC--------CHHHHHHHHHH-CCeEEEECCCCCCCCCCEEE
Confidence            77889999999999999988 67633 4557889998875        35677777755 6999999998853  47999


Q ss_pred             EEeeCChHhHHHHHHHHHHHH
Q 038416          360 IAFAAEPATLEDGLERIKAFC  380 (387)
Q Consensus       360 i~~~~~~e~~~~~~~~l~~~~  380 (387)
                      |+++. .++.+++++.|++++
T Consensus       312 is~~~-~~~~~~l~~al~~~~  331 (332)
T PRK06425        312 IAIRR-RSFNIKLVNALRNFL  331 (332)
T ss_pred             EEeCC-HHHHHHHHHHHHHHh
Confidence            99985 456667777776543

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=1.3e-38  Score=294.28  Aligned_cols=323  Identities=22%  Similarity=0.338  Sum_probs=253.7

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEE-cCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYL-TLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~-~~g~~~a~~   87 (387)
                      .+++.+.+.+    ++++++.+.+++.+....  ...|++. ...++|+.+++++      ++++++|++ ++|+++++.
T Consensus        35 ~~i~l~~~~~----~~~~~~~~~~~~~~~~~~--~~~y~~~-~~~~lr~~ia~~~------~~~~~~i~~~~~Ga~~~i~  101 (361)
T PRK00950         35 SIIKLGSNEN----PLGPSPKAVEAIEKELSK--IHRYPEP-DAPELREALSKYT------GVPVENIIVGGDGMDEVID  101 (361)
T ss_pred             ceEEccCCCC----CCCCCHHHHHHHHHHHHh--hcCCCCC-CHHHHHHHHHHHh------CCCHHHEEEeCCCHHHHHH
Confidence            4556666544    678899999999887764  3467764 3489999999998      567889999 788999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      .++++++++||+|+++.|+|..+...++  ..|.+++.++.  .+++.+|++++++.++++++++++++|+||||..++.
T Consensus       102 ~~~~~~~~~gd~vlv~~p~y~~~~~~~~--~~g~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~  177 (361)
T PRK00950        102 TLMRTFIDPGDEVIIPTPTFSYYEISAK--AHGAKPVYAKR--EEDFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPE  177 (361)
T ss_pred             HHHHHhcCCCCEEEEcCCChHHHHHHHH--HcCCEEEEeec--CCCCCcCHHHHHHHhccCCCEEEEeCCCCCCCCCcCH
Confidence            9999999999999999999999888888  89999988874  3456899999999988889999999999999999997


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      +++.++   |+++|+++|+|++|.++.  +....++  ....+++++++||||.|+++|+|+||+++++        +++
T Consensus       178 ~~l~~l---~~~~~~~li~De~y~~~~--~~~~~~~--~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~--------~~~  242 (361)
T PRK00950        178 EDIRKI---LESTDALVFVDEAYVEFA--EYDYTPL--ALEYDNLIIGRTFSKVFGLAGLRIGYGFVPE--------WLI  242 (361)
T ss_pred             HHHHHH---HHHCCcEEEEECchhhhC--ccchHHH--HHhcCCEEEEEeehHhhcCchhhcchhcCCH--------HHH
Confidence            665554   567899999999999865  2222222  1223578999999999999999999999875        688


Q ss_pred             HHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccC
Q 038416          248 DSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLED  327 (387)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  327 (387)
                      +.+++... ....+++.+.++..++++  .+++++..+.++++++.+.+.|+    +. + .|.+++|+|++++.     
T Consensus       243 ~~~~~~~~-~~~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~r~~l~~~l~----~~-~-~~~~~~~i~~~~~~-----  308 (361)
T PRK00950        243 DYYMRAKT-PFSLTRLSQAAAIAALSD--KEYIEKSIEHGIKSREYLYNELP----FK-V-YPSEANFVLVDVTP-----  308 (361)
T ss_pred             HHHHHhcC-CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHhhcC----ee-E-CCCcceEEEEECCC-----
Confidence            77776654 344677888888888764  45677777888888887776665    33 3 46678899998842     


Q ss_pred             CCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHH
Q 038416          328 IGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFC  380 (387)
Q Consensus       328 ~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~  380 (387)
                       .+..++...+. ++||.+.||..|..  ++++|++++ +.++++++++.|++++
T Consensus       309 -~~~~~~~~~l~-~~gv~v~~~~~f~~~~~~~lRis~~-~~~~~~~l~~~L~~il  360 (361)
T PRK00950        309 -MTAKEFCEELL-KRGVIVRDCTSFRGLGDYYIRVSIG-TFEENERFLEILKEIV  360 (361)
T ss_pred             -CCHHHHHHHHH-HCCEEEeeCCccCCCCCCeEEEECC-CHHHHHHHHHHHHHHh
Confidence             25667777775 56999999887754  469999998 5578999999988765

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=5.1e-39  Score=295.39  Aligned_cols=297  Identities=18%  Similarity=0.289  Sum_probs=236.7

Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCC-CeEEEcCCCCcchHHHhhccCCCc
Q 038416           43 YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPG-ANILIPRPGYPLYEIHAAGSNNNL  121 (387)
Q Consensus        43 ~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g-~~vl~~~p~~~~~~~~~~~~~~g~  121 (387)
                      ...|+.. +..+||+++|+++      ++++++|++|+|+++++..++++++++| |+|+++.|+|..|...++  ..|.
T Consensus        54 ~~~Yp~~-~~~~Lr~aia~~~------~~~~~~I~it~Gs~~~i~~~~~~~~~~g~d~vlv~~P~y~~y~~~~~--~~g~  124 (354)
T PRK04635         54 LNRYPEC-QPPELINAYSAYA------GVAPEQILTSRGADEAIELLIRAFCEPGQDSIACFGPTYGMYAISAE--TFNV  124 (354)
T ss_pred             hccCCCC-CHHHHHHHHHHHh------CcCHHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHH--HcCC
Confidence            3568875 5799999999998      5789999999999999999999999998 899999999999998888  9999


Q ss_pred             eeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCc
Q 038416          122 EARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYV  201 (387)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~  201 (387)
                      +++.+|++  +++.+|++.+++ + +++++|++++||||||.+++.+++++|++.|+  +++||+||+|.++.... ...
T Consensus       125 ~v~~v~~~--~~~~~~~~~l~~-~-~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~--~~~vivDeay~~~~~~~-s~~  197 (354)
T PRK04635        125 GVKALPLT--ADYQLPLDYIEQ-L-DGAKLVFICNPNNPTGTVIDRADIEQLIEMTP--DAIVVVDEAYIEFCPEY-SVA  197 (354)
T ss_pred             EEEEEecC--CCCCCCHHHHHh-c-cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCC--CcEEEEeCchHhhccCc-chH
Confidence            99999985  346788888874 4 58999999999999999999999999999876  49999999999875321 111


Q ss_pred             cccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHH
Q 038416          202 PMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFA  281 (387)
Q Consensus       202 ~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  281 (387)
                      .+  ....+++++++||||+|+++|+|+||+++++        ++++.+..... ..+.+.+.+.++..++.+....++.
T Consensus       198 ~~--~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~~--------~~~~~l~~~~~-~~~~~~~~~~~a~~~l~~~~~~~~~  266 (354)
T PRK04635        198 DL--LASYPNLVVLRTLSKAFALAGARCGFTLANE--------ELIEILMRVIA-PYPVPLPVSEIATQALSEAGLARMK  266 (354)
T ss_pred             HH--HhhCCCEEEEechHHHhhhhHHHHhhhhCCH--------HHHHHHHhhcC-CCCCCHHHHHHHHHHHhcccHHHHH
Confidence            11  2234578999999999999999999999875        68877765433 3455667777777777654445677


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEE
Q 038416          282 KIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIA  361 (387)
Q Consensus       282 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~  361 (387)
                      +..+.++++++.+.+.|++++++. + .|..|+|+|++++        +..++.. ++.++||.+.++..+..++++||+
T Consensus       267 ~~~~~~~~~r~~l~~~L~~~~~~~-~-~~~~g~f~~~~~~--------~~~~~~~-~l~~~gv~v~~~~~~~~~~~lRis  335 (354)
T PRK04635        267 FQVLDLNAQGARLQAALSMYGGAK-V-LEGNGNYVLAKFD--------DVDAVFK-ALWDAGIVARAYKDPRLANCIRFS  335 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCce-E-CCCCCcEEEEECC--------CHHHHHH-HHHHCCEEEEECCCCCCCCeEEEE
Confidence            778889999999999999886666 4 3445778998875        2445554 457789999876544456899999


Q ss_pred             eeCChHhHHHHHHHHHH
Q 038416          362 FAAEPATLEDGLERIKA  378 (387)
Q Consensus       362 ~~~~~e~~~~~~~~l~~  378 (387)
                      ++ +.++++++++.|++
T Consensus       336 ~~-~~e~~~~l~~al~~  351 (354)
T PRK04635        336 FS-NRAETDKLIGLIRN  351 (354)
T ss_pred             eC-CHHHHHHHHHHHHH
Confidence            86 46888888887754

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=7e-38  Score=284.95  Aligned_cols=314  Identities=17%  Similarity=0.256  Sum_probs=241.9

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      ...++.+.|.+    ++++|+.+.+++.+.+.....+.|++. +..+||+.+++|+++..   +++++|++|+|+++++.
T Consensus        19 ~~~i~l~~~~~----~~~~p~~~~~~~~~~~~~~~~~~Y~~~-~~~~Lr~aia~~~~~~~---~~~~~i~it~Ga~~~i~   90 (335)
T PRK14808         19 RDRTYLALNEN----PFPFPEDLVDEVFRRLNSDTLRIYYDS-PDEELIEKILSYLDTDF---LSKNNVSVGNGADEIIY   90 (335)
T ss_pred             CceeEecCCCC----CCCCCHHHHHHHHHHhhhhhhhcCCCC-ChHHHHHHHHHHhCCCC---CCcceEEEcCCHHHHHH
Confidence            45566666665    899999999999998765444457664 78999999999997542   67899999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      .+++++    |.|+++.|+|..|...++  ..|.++..++++.+  +.++...    + ..++++++++||||||.+++.
T Consensus        91 ~~~~~~----d~v~v~~P~y~~~~~~~~--~~g~~~~~v~~~~~--~~~~~~~----~-~~~~~i~i~nP~NPTG~~~s~  157 (335)
T PRK14808         91 VMMLMF----DRSVFFPPTYSCYRIFAK--AVGAKFLEVPLTKD--LRIPEVN----V-GEGDVVFIPNPNNPTGHVFER  157 (335)
T ss_pred             HHHHHh----CcEEECCCCHHHHHHHHH--HcCCeEEEecCCCc--CCCChhH----c-cCCCEEEEeCCCCCCCCCcCH
Confidence            999987    679999999999999999  99999999988532  3333222    2 256899999999999999998


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      +++++|+    +++++||+||+|.+|.  +....++  +...+++++++||||.|+++|+|+||+++++        +++
T Consensus       158 ~~l~~l~----~~~~~ii~DE~Y~~f~--~~~~~~~--~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~~--------~~~  221 (335)
T PRK14808        158 EEIERIL----KTGAFVALDEAYYEFH--GESYVDL--LKKYENLAVIRTFSKAFSLAAQRIGYVVSSE--------KFI  221 (335)
T ss_pred             HHHHHHH----hcCCEEEEECchhhhc--CCchHHH--HHhCCCEEEEEechhhccCcccceEEEEeCH--------HHH
Confidence            8888886    4799999999999864  2222221  2233579999999999999999999999975        788


Q ss_pred             HHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccC
Q 038416          248 DSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLED  327 (387)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  327 (387)
                      +.+.+... ..+.+.++|.++..++++  .++..+..+.+.++++.+.+.|+++ ++. +..| .|.|+|++++..    
T Consensus       222 ~~l~~~~~-~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~-g~~-~~~~-~g~f~~~~l~~~----  291 (335)
T PRK14808        222 DAYNRVRL-PFNVSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREM-GYR-ITDS-RGNFVFIFMEKE----  291 (335)
T ss_pred             HHHHHhcC-CCCCCHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHC-CCE-ECCC-CCeEEEEeCCCc----
Confidence            88876653 456778888888888764  3456777778888889999999988 676 4244 577889988631    


Q ss_pred             CCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHH
Q 038416          328 IGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIK  377 (387)
Q Consensus       328 ~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~  377 (387)
                        +..++... +.++||.+..   |  .+++||+++.. ++.+++++.|+
T Consensus       292 --~~~~~~~~-l~~~Gi~V~~---~--~~~~Risi~~~-~~~~~~~~~l~  332 (335)
T PRK14808        292 --EKERLLEH-LRAKNIAVRS---F--REGVRITIGKR-EENDMILKELE  332 (335)
T ss_pred             --cHHHHHHH-HHHCCeEEEE---C--CCCeEEecCCH-HHHHHHHHHHH
Confidence              34455554 5677999985   2  47899998663 55666666654

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=9.5e-38  Score=284.69  Aligned_cols=306  Identities=18%  Similarity=0.314  Sum_probs=236.3

Q ss_pred             CCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEE
Q 038416           23 LLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILI  102 (387)
Q Consensus        23 ~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~  102 (387)
                      .+++++.+.+++.+.+.......|+. .|..+||+++++++      ++++++|++|+|+++++..++..+  +||+|++
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~Y~~-~g~~~lr~~ia~~~------~~~~~~I~~t~G~~~~l~~~~~~~--~gd~V~v   99 (337)
T PRK03967         29 PFDLPEELKEEIFEELKRVPFNRYPH-ITSDPLREAIAEFY------GLDAENIAVGNGSDELISYLVKLF--EGKHIVI   99 (337)
T ss_pred             CCCCCHHHHHHHHHHhhcCccccCCC-CCHHHHHHHHHHHh------CcCcceEEEcCCHHHHHHHHHHHh--CCCeEEE
Confidence            57888999999998886444567875 68899999999999      468899999999999999988876  6999999


Q ss_pred             cCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCc
Q 038416          103 PRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGI  182 (387)
Q Consensus       103 ~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~  182 (387)
                      +.|+|..+...++  ..|.+++.+++.  .++.+|++.+++.. ++++++++++|+||||.+++.+++.+++    ++++
T Consensus       100 ~~P~y~~~~~~~~--~~g~~~~~v~~~--~~~~~d~~~l~~~~-~~~~~v~~~~P~NPtG~~~~~~~l~~i~----~~~~  170 (337)
T PRK03967        100 TPPTFGMYSFYAK--LNGIPVIDVPLK--EDFTIDGERIAEKA-KNASAVFICSPNNPTGNLQPEEEILKVL----ETGK  170 (337)
T ss_pred             eCCChHHHHHHHH--HcCCeEEEeecC--CCCCcCHHHHHHhc-cCCCEEEEeCCCCCCCCCCCHHHHHHHH----hcCC
Confidence            9999998888888  899999999875  34688999998865 5788999999999999999977666654    3699


Q ss_pred             EEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhhccCCcch
Q 038416          183 IVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVT  262 (387)
Q Consensus       183 ~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (387)
                      ++|+||+|.++..  ....++  ....+++++++||||.|+++|+|+||+++++        ++++.+.+... ..+.+.
T Consensus       171 ~ii~De~y~~~~~--~~~~~~--~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~--------~~i~~~~~~~~-~~~~~~  237 (337)
T PRK03967        171 PVVLDEAYAEFSG--KSLIGL--IDEYPNLILLRTFSKAFGLAGIRAGYAIANE--------EIIDALYRIKP-PFSLNI  237 (337)
T ss_pred             EEEEECchhhhcc--cchHHH--HhhCCCEEEEecchHhhcchhhhheeeecCH--------HHHHHHHhhcC-CCCCCH
Confidence            9999999998652  222121  2233579999999999999999999999865        78888877654 346678


Q ss_pred             HHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhc
Q 038416          263 FIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEE  342 (387)
Q Consensus       263 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  342 (387)
                      ++|.++..++++  .+++.+..+.+.++++.+.+.|.+.     . .|.+++|+|++++            +...+ .++
T Consensus       238 ~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~-----~-~~~~~~~~~~~~~------------~~~~l-~~~  296 (337)
T PRK03967        238 LTMKIVRLALDH--YDLIEERIDYIIKERERVRRELGEY-----A-YPSDANFLLLKLD------------AYDYL-LEN  296 (337)
T ss_pred             HHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHhccC-----c-CCCCCcEEEEhHH------------HHHHH-HHC
Confidence            899999888874  3456666666677777777777654     2 4678999997652            34545 456


Q ss_pred             CeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHH
Q 038416          343 SVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       343 gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~  382 (387)
                      ||.+.++.. ...+++||+++. .++.+++++.|.++.+.
T Consensus       297 gi~v~~~~~-~~~~~~Ri~~~~-~~~~~~l~~~l~~~~~~  334 (337)
T PRK03967        297 GIVVRKLSG-RLEGHIRVTVGK-REENDEFIKALKEIKEG  334 (337)
T ss_pred             CEEEEeCCC-CCCCeEEEecCC-HHHHHHHHHHHHHHHHh
Confidence            999987643 235799999975 34444455555444443

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=100.00  E-value=1.7e-37  Score=282.14  Aligned_cols=283  Identities=17%  Similarity=0.184  Sum_probs=223.0

Q ss_pred             CCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceee
Q 038416           45 CYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEAR  124 (387)
Q Consensus        45 ~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~  124 (387)
                      .|+..  ..+||+.|++++        ..++|++|+|+++++..++.  +.+||+|++++|+|+.+...++  ..|.++.
T Consensus        46 ~yp~~--~~~Lr~~ia~~~--------~~~~I~it~Gs~~al~~~~~--~~~gd~v~v~~P~y~~~~~~~~--~~g~~~~  111 (330)
T PRK05664         46 RLPET--DDGLEAAARAYY--------GAPQLLPVAGSQAAIQALPR--LRAPGRVGVLSPCYAEHAHAWR--RAGHQVR  111 (330)
T ss_pred             hCCCC--hHHHHHHHHHHh--------CCCCEEECcCHHHHHHHHHH--ccCCCEEEEcCCChHHHHHHHH--HcCCeEE
Confidence            47653  389999999998        34799999999999998863  4799999999999999999999  9999999


Q ss_pred             eeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcccc
Q 038416          125 HYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMG  204 (387)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~  204 (387)
                      .+++          ++++++++ +++++++++||||||.+++.+++++|+++|++++++||+||+|.++.    +..++.
T Consensus       112 ~v~~----------~~~~~~~~-~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~----~~~s~~  176 (330)
T PRK05664        112 ELDE----------AEVEAALD-SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNT----PQHSLA  176 (330)
T ss_pred             Eech----------hhHhhhhc-CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCC----Cccccc
Confidence            8875          23445553 67889999999999999999999999999999999999999998753    112344


Q ss_pred             ccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHH
Q 038416          205 VFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKII  284 (387)
Q Consensus       205 ~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  284 (387)
                      .+...+++++++||||.|+++|+|+||+++++        ++++.+..... ....+.+.+.++..+|.+  ..+.++..
T Consensus       177 ~~~~~~~vi~~~SfSK~~gl~GlRiG~~v~~~--------~l~~~~~~~~~-~~~~~~~~~~~~~~~L~~--~~~~~~~~  245 (330)
T PRK05664        177 ACAHRPGLIVLRSFGKFFGLAGARLGFVLAEP--------ALLRALAELLG-PWTVSGPTRWLAQAALAD--TPWQRRQR  245 (330)
T ss_pred             ccccCCCEEEEeeccccccCCCcceEEEEeCH--------HHHHHHHHhcC-CCCCCHHHHHHHHHHHhC--hHHHHHHH
Confidence            45455689999999999999999999999975        68888877643 345677888888888875  34566778


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeC
Q 038416          285 GLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAA  364 (387)
Q Consensus       285 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~  364 (387)
                      +.+.++++.+.+.|+++ ++. . .+..++|+|++++        +..++...+ .++||.+.+   |...+++||+++.
T Consensus       246 ~~~~~~r~~l~~~L~~~-~~~-~-~~~~~~f~~~~~~--------~~~~~~~~l-~~~gi~v~~---f~~~~~iRis~~~  310 (330)
T PRK05664        246 ERLLAASQRLAALLRRH-GLT-P-AGGCALFQWVRTE--------DAAALHEFL-ARRGILTRL---FEQPASLRFGLPA  310 (330)
T ss_pred             HHHHHHHHHHHHHHHHC-CCc-c-cCCcceEEEEecC--------CHHHHHHHH-HHCCeEEEE---CCCCCeEEEECCC
Confidence            88999999999999987 544 2 2233377787654        355666655 677999974   4456899999986


Q ss_pred             ChHhHHHHHHHHHHHHHH
Q 038416          365 EPATLEDGLERIKAFCQR  382 (387)
Q Consensus       365 ~~e~~~~~~~~l~~~~~~  382 (387)
                      ++++.+++.+.|++..++
T Consensus       311 ~~~~~~~l~~al~~~~~~  328 (330)
T PRK05664        311 DEADWARLDQALLAYRKE  328 (330)
T ss_pred             CHHHHHHHHHHHHHHHhh
Confidence            666777777776665543

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=100.00  E-value=2.3e-37  Score=281.84  Aligned_cols=287  Identities=15%  Similarity=0.152  Sum_probs=228.8

Q ss_pred             CCCCCCCCcHHHHHHHHHHHhhcCCCCCC-CCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCce
Q 038416           44 NCYSPTLGVPSARRGIADYLNRDLPYKLS-PEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLE  122 (387)
Q Consensus        44 ~~y~~~~~~~~lr~~ia~~~~~~~~~~~~-~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~  122 (387)
                      ..|+.. . .+||+.++++++      +. +++|++|+|+++++..+.. ++++|+ |+++.|+|..|...++  ..|.+
T Consensus        49 ~~Yp~~-~-~~L~~~ia~~~~------~~~~~~I~i~~Gs~e~i~~l~~-~~~~g~-v~v~~P~y~~y~~~~~--~~g~~  116 (339)
T PRK06959         49 RRLPED-D-DGLAACAARYYG------APDAAHVLPVAGSQAAIRALPA-LLPRGR-VGIAPLAYSEYAPAFA--RHGHR  116 (339)
T ss_pred             HhCCCc-h-HHHHHHHHHHhC------CCCcccEEECcCHHHHHHHHHH-hcCCCe-EEEcCCCcHHHHHHHH--HCCCE
Confidence            358864 3 899999999983      44 5899999999999997765 467776 8899999999999999  99999


Q ss_pred             eeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc
Q 038416          123 ARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP  202 (387)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~  202 (387)
                      ++.++++.        +.    +....+.+++++||||||.+++.++++++++.|.+++.++|+||+|.++...    .+
T Consensus       117 ~~~v~~~~--------~~----~~~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~----~s  180 (339)
T PRK06959        117 VVPLDEAA--------DT----LPAALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA----AS  180 (339)
T ss_pred             EEeecccc--------hh----ccccCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc----cc
Confidence            98887532        22    2224578999999999999999999999999999999999999999987532    22


Q ss_pred             ccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHH
Q 038416          203 MGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAK  282 (387)
Q Consensus       203 ~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  282 (387)
                      +..+...+++++++||||.|+++|+|+||++++.        ++++.+.+... ....+.+.|.++.++|++  ..+.++
T Consensus       181 ~~~~~~~~~vi~l~SfSK~~gl~GlRiGy~v~~~--------~li~~l~~~~~-~~~vs~~~q~a~~~~L~~--~~~~~~  249 (339)
T PRK06959        181 LAAHTDRPGLVVLRSVGKFFGLAGVRAGFVLAAP--------ALLAALRDALG-AWTVSGPARHAVRAAFAD--AAWQAA  249 (339)
T ss_pred             chhccCCCCEEEEecChhhcCCcchheEEEecCH--------HHHHHHHHhcC-CCCCcHHHHHHHHHHhCc--HHHHHH
Confidence            3333233568999999999999999999999975        78888887754 455678899999999975  467788


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe
Q 038416          283 IIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF  362 (387)
Q Consensus       283 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~  362 (387)
                      ..+.++++++.+.+.|+++ ++. + . ..++|+|++++        +..++...+ .++||.+..   |+..+++||++
T Consensus       250 ~~~~~~~~r~~l~~~L~~~-g~~-~-~-~~~~f~~~~~~--------~~~~l~~~l-~~~GI~vr~---~~~~~~lRisi  313 (339)
T PRK06959        250 MRERLAADGARLAALLRAH-GFA-V-H-ATPLFSWTDDP--------RAAALHAAL-ARRGIWTRY---FAPPPSVRFGL  313 (339)
T ss_pred             HHHHHHHHHHHHHHHHHHC-CCC-c-c-CcceEEEEeCC--------CHHHHHHHH-HhCCeEEEE---CCCCCeEEEEC
Confidence            8899999999999999988 666 3 2 35788898775        345666665 566999974   44467999999


Q ss_pred             eCChHhHHHHHHHHHHHHHHhhh
Q 038416          363 AAEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       363 ~~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      +.++++.+++++.|+++++-+..
T Consensus       314 ~~~~~e~~~l~~al~~~~~~~~~  336 (339)
T PRK06959        314 PADEAEWQRLEDALAECVPTLAA  336 (339)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhh
Confidence            77777888888888887776654

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=100.00  E-value=1.2e-37  Score=283.47  Aligned_cols=286  Identities=20%  Similarity=0.265  Sum_probs=234.5

Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCce
Q 038416           43 YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLE  122 (387)
Q Consensus        43 ~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~  122 (387)
                      ...|+...+ .++|+.+++++      ++++++|++|+|+++++..+..+ +.+| .|++++|+|..+...+.  ..|.+
T Consensus        41 ~~~y~~~~~-~~lr~~la~~~------~~~~~~i~~t~G~~~~i~~~~~~-l~~g-~vl~~~p~y~~~~~~~~--~~g~~  109 (330)
T TIGR01140        41 WARYPDPEY-DELRAAAAAYY------GLPAASVLPVNGAQEAIYLLPRL-LAPG-RVLVLAPTYSEYARAWR--AAGHE  109 (330)
T ss_pred             HhhCCCccH-HHHHHHHHHHh------CCChhhEEECCCHHHHHHHHHHH-hCCC-eEEEeCCCcHHHHHHHH--HcCCE
Confidence            457887665 99999999998      45789999999999999998766 4677 69999999999999999  99999


Q ss_pred             eeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc
Q 038416          123 ARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP  202 (387)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~  202 (387)
                      ++.++         |++++++.++ +++++++++|+||||.+++.+++++|+++|+++|+++|+|++|.++.+..    +
T Consensus       110 ~~~~~---------d~~~l~~~~~-~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~----~  175 (330)
T TIGR01140       110 VVELP---------DLDRLPAALE-ELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDA----S  175 (330)
T ss_pred             EEEeC---------CHHHHHhhcc-cCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCcc----c
Confidence            88875         7888888884 67789999999999999999999999999999999999999999876431    2


Q ss_pred             cccc-CCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHH
Q 038416          203 MGVF-GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFA  281 (387)
Q Consensus       203 ~~~~-~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  281 (387)
                      +..+ +..+++++++|+||.|+++|+|+||+++++        ++++.+..... ..+.+.++|.++..++++  ..+..
T Consensus       176 ~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~--------~~~~~l~~~~~-~~~~s~~~q~~~~~~l~~--~~~~~  244 (330)
T TIGR01140       176 LAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHP--------ALLARLREALG-PWTVNGPARAAGRAALAD--TAWQA  244 (330)
T ss_pred             hhhHhccCCCEEEEEecchhhcCchhhhhheeCCH--------HHHHHHHhcCC-CCCchHHHHHHHHHHHhc--hHHHH
Confidence            2222 234678999999999999999999999975        67787776543 456678889999888875  45667


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEE
Q 038416          282 KIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLR  359 (387)
Q Consensus       282 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~R  359 (387)
                      +..+.++++++.+.+.|++++.+. + .|.+|+|+|++++        +..++.+.++ ++||.+.||..|..  .+++|
T Consensus       245 ~~~~~~~~~~~~l~~~L~~~~~~~-~-~~~~~~f~~~~~~--------~~~~l~~~l~-~~gi~v~pg~~f~~~~~~~iR  313 (330)
T TIGR01140       245 ATRARLAAERARLAALLARLGGLE-V-VGGTALFLLVRTP--------DAAALHEALA-RRGILIRDFDNFPGLDPRYLR  313 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCce-E-CCCCCeEEEEEcC--------CHHHHHHHHH-HCCEEEEECCCCCCCCCCEEE
Confidence            788999999999999999986555 4 4667899999876        3457777775 56999999999853  47999


Q ss_pred             EEeeCChHhHHHHHHHH
Q 038416          360 IAFAAEPATLEDGLERI  376 (387)
Q Consensus       360 i~~~~~~e~~~~~~~~l  376 (387)
                      |+++...++ +.++++|
T Consensus       314 i~~~~~~~~-~~~~~~l  329 (330)
T TIGR01140       314 FALPTDEEN-DRLEEAL  329 (330)
T ss_pred             EEecCHHHH-HHHHHhh
Confidence            999876655 6666654

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK08354 putative aminotransferase; Provisional

Probab=100.00  E-value=2.1e-36  Score=272.87  Aligned_cols=300  Identities=16%  Similarity=0.228  Sum_probs=218.8

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      +..++.+.+..    .++ |+.+.+++.++...  ...|+.   ...+|+.+++++.         ++|++|+|+++++.
T Consensus         8 ~~~i~l~~~~n----p~~-p~~~~~a~~~~~~~--~~~yp~---~~~l~~~ia~~~~---------~~I~vt~G~~~al~   68 (311)
T PRK08354          8 EGLIDFSASVN----PYP-PEWLDEMFERAKEI--SGRYTY---YEWLEEEFSKLFG---------EPIVITAGITEALY   68 (311)
T ss_pred             cceeEecCCCC----CCC-CHHHHHHHHHHHHH--hhcCCC---hHHHHHHHHHHHC---------CCEEECCCHHHHHH
Confidence            34555555422    234 57889999887654  346764   4789999999882         47999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      .++..+ .+||+|+++.|+|+.+...++  ..|.++..++        +|++.++++++ +++++++++|+||||.+++.
T Consensus        69 ~~~~~~-~~gd~vlv~~P~y~~~~~~~~--~~g~~~~~~~--------~d~~~l~~~~~-~~~~vi~~~P~NPTG~~~~~  136 (311)
T PRK08354         69 LIGILA-LRDRKVIIPRHTYGEYERVAR--FFAARIIKGP--------NDPEKLEELVE-RNSVVFFCNPNNPDGKFYNF  136 (311)
T ss_pred             HHHHhh-CCCCeEEEeCCCcHHHHHHHH--HcCCEEeecC--------CCHHHHHHhhc-CCCEEEEecCCCCCCCccCH
Confidence            888654 489999999999999999999  9999987653        47888888876 56789999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      +++++|+++|+++|+++|+||+|.+|.+++..   .    ..+++++++||||.|+++|+|+||+++           +.
T Consensus       137 ~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~---~----~~~~vi~~~S~SK~~~l~GlRiG~~v~-----------~~  198 (311)
T PRK08354        137 KELKPLLDAVEDRNALLILDEAFIDFVKKPES---P----EGENIIKLRTFTKSYGLPGIRVGYVKG-----------FE  198 (311)
T ss_pred             HHHHHHHHHhhhcCcEEEEeCcchhccccccc---c----CCCcEEEEeccHhhcCCccceeeeeee-----------hH
Confidence            99999999999999999999999998876421   1    145799999999999999999999997           23


Q ss_pred             HHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccC
Q 038416          248 DSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLED  327 (387)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  327 (387)
                      +.+++... ....+...+.++..+++. ...++.+..+.+.+.++.+.+.+        ...|.+ .|+++.++      
T Consensus       199 ~~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l--------~~~~~~-~~~~~~~~------  261 (311)
T PRK08354        199 EAFRSVRM-PWSIGSTGYAFLEFLIED-DFEHLRKTMPLIWREKERFEKAL--------YVKSDA-NFFIKDVG------  261 (311)
T ss_pred             HHHHHcCC-CccCCHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHhc--------CCCCCC-cEEEEECC------
Confidence            44444432 334455666666666553 22334444444444443332222        113454 45555553      


Q ss_pred             CCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCC--hHhHHHHHHHH
Q 038416          328 IGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAE--PATLEDGLERI  376 (387)
Q Consensus       328 ~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~--~e~~~~~~~~l  376 (387)
                        ++.++...+ .++||.+.||..|+.++++||+++..  .+++..+++.+
T Consensus       262 --~~~~~~~~l-~~~gv~v~~g~~f~~~~~iRi~~~~~~~~~~l~~al~~~  309 (311)
T PRK08354        262 --DAEKFVEFL-KRNGILVRDCTSFGLPGYIRFSVRDREENEKLIRALREW  309 (311)
T ss_pred             --CHHHHHHHH-HHCCeEEEecccCCCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence              345676765 66799999999998779999999753  35555555543

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-36  Score=265.66  Aligned_cols=329  Identities=22%  Similarity=0.307  Sum_probs=268.0

Q ss_pred             CCCCCCCCcHHHHHHHHHHHh-hcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCce
Q 038416           44 NCYSPTLGVPSARRGIADYLN-RDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLE  122 (387)
Q Consensus        44 ~~y~~~~~~~~lr~~ia~~~~-~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~  122 (387)
                      .+|++..|.++|...+.++.. ..+.......+|++|+|.+.+++.+++.++++||+|++..++|.+....++  ..|++
T Consensus        94 lQYg~s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~s~~--a~gv~  171 (472)
T KOG0634|consen   94 LQYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQSME--ALGVK  171 (472)
T ss_pred             hccccccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhhcCCCceEEecccchHHHHhcc--ccCce
Confidence            589999999999999999766 344445566799999999999999999999999999999999999888888  99999


Q ss_pred             eeeeccCCCCCccCChhhHHHhhcc---C-----ceEEEEeCC--CCCccccCCHHHHHHHHHHHHhcCcEEeecccccc
Q 038416          123 ARHYDLLPEKRWEVDLDGVEALADE---N-----TVAIVIINP--GNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNH  192 (387)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~l~~~~~~---~-----~~~v~l~~p--~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~  192 (387)
                      +++++++.   .++++|.|++.++.   .     ..-|+++-|  +||||..++.+..++|.++|++|++++|+||.|.-
T Consensus       172 ~ipv~md~---~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~  248 (472)
T KOG0634|consen  172 IIPVKMDQ---DGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYF  248 (472)
T ss_pred             EEeccccC---CCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccce
Confidence            98888743   37899999987643   1     134556666  89999999999999999999999999999999998


Q ss_pred             cccCC--------CC-----------CccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhh
Q 038416          193 LAFGS--------TP-----------YVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGC  253 (387)
Q Consensus       193 ~~~~~--------~~-----------~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~  253 (387)
                      +.++.        .+           ..++.+++.+++++.+.||||. ..||+|+||+.+++        .+++++-..
T Consensus       249 Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKi-iaPGlRlG~it~~~--------~~l~ril~~  319 (472)
T KOG0634|consen  249 LQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKI-IAPGLRLGWITGNS--------LFLKRILDL  319 (472)
T ss_pred             eeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhh-hcCcceeEEeecCH--------HHHHHHhhh
Confidence            88772        11           2234556778899999999999 59999999999976        577777665


Q ss_pred             hh-ccCCcchHHHHHHHHHhhhccH----HHHHHHHHHHHHHHHHHHHHhhc-CCCC-CCCCCCCceEEEEEecCccc--
Q 038416          254 LN-AASHPVTFIQAAVPRIVDETNE----AFFAKIIGLLKETADICYERIKE-IPCI-TCPVKPQGAMFVMVKLNVSM--  324 (387)
Q Consensus       254 ~~-~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~l~~-~~~~-~~~~~~~~g~~~~~~~~~~~--  324 (387)
                      .. .+.+++.+.|..+.++|+...+    .|+.+.+..+..++.++..++.+ +|.- -.++.|.+|+|+|++++...  
T Consensus       320 ae~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~~  399 (472)
T KOG0634|consen  320 AEVATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYINFD  399 (472)
T ss_pred             cceeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEecccccc
Confidence            43 4567899999999999987554    67778888888999999999987 6643 33668999999999997211  


Q ss_pred             -ccCCCcHHHHHHHHHHhcCeEEEcCCccCC------CC-eEEEEee-CChHhHHHHHHHHHHHHHHhhhc
Q 038416          325 -LEDIGDDLEFCLKLAKEESVIILPGRTVGM------KN-WLRIAFA-AEPATLEDGLERIKAFCQRHAKK  386 (387)
Q Consensus       325 -~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~------~~-~~Ri~~~-~~~e~~~~~~~~l~~~~~~~~~~  386 (387)
                       .+++...+++....+.+.||.+.+|..|..      .+ +||++++ .+.|+++++++++..+++++.+.
T Consensus       400 ~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a~~e~l~~g~~rf~~~ike~f~~  470 (472)
T KOG0634|consen  400 TKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFAEPEKLDEGIERFGSVIKEHFIT  470 (472)
T ss_pred             cccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeecCCHHHHHHHHHHHHHHHHHHhhc
Confidence             112223567788888999999999998854      23 8999996 58899999999999999987653

>cd00609 AAT_like Aspartate aminotransferase family

Probab=100.00  E-value=1.9e-35  Score=272.38  Aligned_cols=345  Identities=30%  Similarity=0.494  Sum_probs=275.4

Q ss_pred             CCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHH
Q 038416           12 SPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLS   91 (387)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~   91 (387)
                      +.+.|.+    ++..++.++.++.+.........|+...+..++++.+++++...++.....+++++++|+++++..++.
T Consensus         2 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~   77 (350)
T cd00609           2 DLSIGEP----DFPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLR   77 (350)
T ss_pred             CCCCCCC----CCCCCHHHHHHHHHHhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHH
Confidence            4445544    567777777777663233344577888899999999999999877766678899999999999999999


Q ss_pred             hhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHH
Q 038416           92 VLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQ  171 (387)
Q Consensus        92 ~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~  171 (387)
                      ++.++||+|+++.++|+++...++  ..|.++..++.........+.+.++....+++++|++++|+||||..+|.++++
T Consensus        78 ~~~~~g~~vl~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~tG~~~~~~~l~  155 (350)
T cd00609          78 ALLNPGDEVLVPDPTYPGYEAAAR--LAGAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELE  155 (350)
T ss_pred             HhCCCCCEEEEcCCCchhHHHHHH--HCCCEEEEEecccccCCccCHHHHHhhcCccceEEEEECCCCCCCcccCHHHHH
Confidence            999999999999999999999999  999999999886544333223566666778899999999999999999999999


Q ss_pred             HHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHH
Q 038416          172 KIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIK  251 (387)
Q Consensus       172 ~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~  251 (387)
                      +|+++|+++|+++|+|++|+.+.+.+.....+......+.+++++|++|.++.+|.++|++++++       +++.+.++
T Consensus       156 ~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~-------~~~~~~~~  228 (350)
T cd00609         156 ELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPP-------EELLERLK  228 (350)
T ss_pred             HHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCH-------HHHHHHHH
Confidence            99999999999999999999877665443222233344567999999999988999999999864       14677776


Q ss_pred             hhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCc
Q 038416          252 GCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGD  330 (387)
Q Consensus       252 ~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  330 (387)
                      .... ....++...+.++..+++... .++++..+.+.++++.+.+.|++++.... ..+..|+++|++++..      .
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~g~~~~~~~~~~------~  300 (350)
T cd00609         229 KLLPYTTSGPSTLSQAAAAAALDDGE-EHLEELRERYRRRRDALLEALKELGPLVV-VKPSGGFFLWLDLPEG------D  300 (350)
T ss_pred             HHHHhcccCCChHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCccc-cCCCccEEEEEecCCC------C
Confidence            6543 346778888888888888643 67788889999999999999998754442 3677899999888642      2


Q ss_pred             HHHHHHHHHHhcCeEEEcCCccC--CCCeEEEEeeCChHhHHHHHHHHH
Q 038416          331 DLEFCLKLAKEESVIILPGRTVG--MKNWLRIAFAAEPATLEDGLERIK  377 (387)
Q Consensus       331 ~~~~~~~ll~~~gi~v~~g~~~~--~~~~~Ri~~~~~~e~~~~~~~~l~  377 (387)
                      ..+.+.+++.++||.+.++..|.  .+.++||+++..+++++.++++|+
T Consensus       301 ~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~~~~i~~~~~al~  349 (350)
T cd00609         301 DEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATPEEELEEALERLA  349 (350)
T ss_pred             hHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCCHHHHHHHHHHhh
Confidence            45666777788899999988776  578999999766999999999885

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=9.6e-34  Score=235.56  Aligned_cols=344  Identities=23%  Similarity=0.331  Sum_probs=253.4

Q ss_pred             ccCCCCCCCCCCCCCCCcHHHHHHHHHHhcC----C----CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCC
Q 038416           10 RHSPWPRRPLGVSLLSDSTVAEDAVVDALRT----A----HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLG   81 (387)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~----~----~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g   81 (387)
                      .++..-|+|      ..-|++.+..++....    .    ...+|..++|...|-+++++++++++|+...+++|.+|+|
T Consensus        32 ~imLggGNP------a~iPem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~~NIalTnG  105 (417)
T COG3977          32 AIMLGGGNP------ARIPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNG  105 (417)
T ss_pred             ceeeCCCCc------ccChhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCccceeeecCC
Confidence            556667776      4556666666654442    1    3468999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhcC---CC--CeEEEc-CCCCcchHHHhhccCCCceeee---eccCCCC--CccCChhhHHHhhccCce
Q 038416           82 CSQAIEISLSVLAR---PG--ANILIP-RPGYPLYEIHAAGSNNNLEARH---YDLLPEK--RWEVDLDGVEALADENTV  150 (387)
Q Consensus        82 ~~~a~~~~~~~l~~---~g--~~vl~~-~p~~~~~~~~~~~~~~g~~~~~---~~~~~~~--~~~~~~~~l~~~~~~~~~  150 (387)
                      ++.+.+-++..+..   .|  .+|+++ .|.|.+|.....  ....=+.+   +++.++.  .+.+|.+++.  +...+.
T Consensus       106 SQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l--~~d~fVs~kP~iel~~~g~FKY~vDF~~l~--i~e~~g  181 (417)
T COG3977         106 SQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGL--EEDLFVSAKPNIELLPAGQFKYHVDFEHLH--IGESTG  181 (417)
T ss_pred             ccchHHHHHHHhcCccCCCcceeEeeccChhhcccccccc--CccceeeccCCcccccccceeeccCHHHcc--cccccc
Confidence            99999999988853   23  367765 889988865544  22211111   1122222  3456666655  456788


Q ss_pred             EEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc--ccc--cCCCccEEEEecCcccccccc
Q 038416          151 AIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP--MGV--FGSIVPVITLGSISKRWIVPG  226 (387)
Q Consensus       151 ~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~--~~~--~~~~~~~~~i~s~sK~~~~~g  226 (387)
                      +|+++.|.||||.+++.+|+.+|..++++||+++|+|.+|+.      ++..  +.+  .-..++++.+.|+||. |+||
T Consensus       182 ~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~------PFP~iifsd~~~~w~~NiilC~SLSK~-GLPG  254 (417)
T COG3977         182 AICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGV------PFPGIIFSDATPLWNENIILCMSLSKL-GLPG  254 (417)
T ss_pred             eEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCC------CCCceecccccccCCCCEEEEeehhhc-CCCC
Confidence            999999999999999999999999999999999999999984      2222  111  2345789999999999 9999


Q ss_pred             cceEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHH------HHHHHHHHHHHHHHHhh
Q 038416          227 WRLGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAK------IIGLLKETADICYERIK  299 (387)
Q Consensus       227 ~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~l~  299 (387)
                      .|+|.+++.+        +++..+..... .+..+..++++.+..+++.+.-..+.+      ..++.+...+.+++.|.
T Consensus       255 ~R~GIiIane--------~viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp  326 (417)
T COG3977         255 SRCGIIIANE--------KVIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLP  326 (417)
T ss_pred             cceeEEEccH--------HHHHHHHhccceeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcC
Confidence            9999999975        77777776543 455778888898888888754222222      22333333334444444


Q ss_pred             cCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC---------CCeEEEEeeCChHhHH
Q 038416          300 EIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM---------KNWLRIAFAAEPATLE  370 (387)
Q Consensus       300 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---------~~~~Ri~~~~~~e~~~  370 (387)
                      +. -+. .+.|++..|+|+.|....+    ++++++++| ++.|+++.||..|..         ++|+|+++..++++++
T Consensus       327 ~~-~~~-iHkpEGAIFlWLWf~dLPI----tt~~LYq~L-Ka~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~~~~~~~ie  399 (417)
T COG3977         327 EY-RCL-IHKPEGAIFLWLWFKDLPI----TTEELYQRL-KARGVLMVPGHYFFPGLDKEWPHTHQCMRMNYVPEPEKIE  399 (417)
T ss_pred             cc-cee-eecCCcceeehhhhccCCC----CHHHHHHHH-HhCeEEEecccccCCCCCCCCCCccceEEEecCCCHHHHH
Confidence            43 244 5689999999998865433    566777766 888999999998754         4799999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 038416          371 DGLERIKAFCQRHAK  385 (387)
Q Consensus       371 ~~~~~l~~~~~~~~~  385 (387)
                      .++.+|.+.+++...
T Consensus       400 ~Gva~lae~ve~~yq  414 (417)
T COG3977         400 KGVAILAEEVERAYQ  414 (417)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999887643

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=2e-33  Score=241.57  Aligned_cols=346  Identities=28%  Similarity=0.447  Sum_probs=269.2

Q ss_pred             cHHHHHHHHHHhcC--CCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc-CCCCeEEEc
Q 038416           27 STVAEDAVVDALRT--AHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA-RPGANILIP  103 (387)
Q Consensus        27 ~~~v~~a~~~~~~~--~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~g~~vl~~  103 (387)
                      |..+++.....+..  +....|+.++|.+-+|+.+|+|+.++.|++.++++|++|+|++.|+..++..++ .+.+.|++|
T Consensus        88 p~Dai~RA~~~L~~~gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliP  167 (475)
T KOG0258|consen   88 PTDAIKRAKRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIP  167 (475)
T ss_pred             CHHHHHHHHHHHHhcCCcccccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEee
Confidence            34444444444443  256789999999999999999999999999999999999999999999999986 566899999


Q ss_pred             CCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc-----CceEEEEeCCCCCccccCCHHHHHHHHHHHH
Q 038416          104 RPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE-----NTVAIVIINPGNPCGNVFSYQHLQKIARTAR  178 (387)
Q Consensus       104 ~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~  178 (387)
                      .|.|+-|.....  ..|...+.+.++++++|.+|.++|++.+++     +.++++++||.||||++++.+.+++|+.+|.
T Consensus       168 iPQYPLYsAti~--l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~  245 (475)
T KOG0258|consen  168 IPQYPLYSATIS--LLGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAA  245 (475)
T ss_pred             cCCCchhHHHHH--HhCCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHH
Confidence            999999988888  999999999999999999999999987754     5788999999999999999999999999999


Q ss_pred             hcCcEEeecccccccccCCC-CCcccc----cc----CCCccEEEEecCccccc-ccccceEEEEeeCCCCcccchhHHH
Q 038416          179 NLGIIVIADEVYNHLAFGST-PYVPMG----VF----GSIVPVITLGSISKRWI-VPGWRLGWLVTSDPNGILQNSGFVD  248 (387)
Q Consensus       179 ~~~~~li~D~~~~~~~~~~~-~~~~~~----~~----~~~~~~~~i~s~sK~~~-~~g~r~G~i~~~~~~~~~~~~~~~~  248 (387)
                      +++++++.||+|++-.|... .+.+++    .+    .....++..+|.||.+. =.|.|-||+-.-+     ..|+..+
T Consensus       246 ~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n-----~~prv~~  320 (475)
T KOG0258|consen  246 EEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLN-----RDPRVKQ  320 (475)
T ss_pred             HcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeeccc-----CChhHHH
Confidence            99999999999998887753 444432    12    22345788889999873 5789999987644     2356666


Q ss_pred             HHHhhhhccCCcchHHHHHHHHHhhhcc---------HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEe
Q 038416          249 SIKGCLNAASHPVTFIQAAVPRIVDETN---------EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVK  319 (387)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~  319 (387)
                      .+.+.....-.++..+|......+....         ....+.+...++++++.+.+.+++++|+.+. .+++.+|+|.+
T Consensus       321 qi~Kl~si~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~~gi~cn-~~qGAMY~fP~  399 (475)
T KOG0258|consen  321 QIKKLASIKLCPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSLEGISCN-PVQGAMYLFPQ  399 (475)
T ss_pred             HHHHHHhhhhcCCccchhhhceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHhhcCceeec-cCccceeeccc
Confidence            6666654445566667776666555322         1234566688888999999999999999976 89999999988


Q ss_pred             cCccc-------ccCCCcHHHHHHHHHHhcCeEEEcCCccCCCC---eEEEEeeCChHhHHHHHHHHHHHHHHh
Q 038416          320 LNVSM-------LEDIGDDLEFCLKLAKEESVIILPGRTVGMKN---WLRIAFAAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       320 ~~~~~-------~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~---~~Ri~~~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      +..+.       ..+...+.-.+..||+..||++.||+.|+...   +||..+-...  + +.+++++++-.+.
T Consensus       400 i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~TiLp~~--~-~~i~~~~~fH~~f  470 (475)
T KOG0258|consen  400 ISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQKEGTYHFRTTILPPG--L-EIIEKFKKFHAEF  470 (475)
T ss_pred             ccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCCCceeEEEEeecCch--h-HHHHHHHHHHHHH
Confidence            65431       11233444567889999999999999999843   5888873322  4 6677776665554

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=100.00  E-value=3.8e-32  Score=254.70  Aligned_cols=341  Identities=16%  Similarity=0.117  Sum_probs=247.0

Q ss_pred             cccCCCCCCCCCCCCCCCcH---HHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDST---VAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQA   85 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~---~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a   85 (387)
                      -.++++.|+|  ++|+++++   .+.+++.+++..+. ..|....+..+||++++++++        .+++++|+|+++|
T Consensus        37 ~~~~L~~g~p--~~D~~tds~t~a~~~a~~~a~~~g~-~~Y~~~~g~~~Lreaia~~~~--------~~~vv~t~ggt~A  105 (460)
T PRK13238         37 NPFLLKSEDV--FIDLLTDSGTGAMSDRQWAAMMRGD-EAYAGSRSYYRLEDAVKDIFG--------YPYTIPTHQGRAA  105 (460)
T ss_pred             CEEeCCCCCC--CCCCCCCCCchhhhHHHHHHHHhCC-cccCCCCCHHHHHHHHHHHhC--------CCcEEECCCHHHH
Confidence            4556668777  34566655   68888888876543 479988999999999999993        4689999999999


Q ss_pred             HHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCC------CCcc--CChhhHHHhhcc----CceEEE
Q 038416           86 IEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPE------KRWE--VDLDGVEALADE----NTVAIV  153 (387)
Q Consensus        86 ~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~--~~~~~l~~~~~~----~~~~v~  153 (387)
                      +..++.+++++|| |++++|.|..+...+.  ..|.+++.+++.+.      ++|.  +|++.|++.+++    ++++|+
T Consensus       106 ~~~~~~all~pGD-Vii~~p~~~~~~~~i~--~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Iv  182 (460)
T PRK13238        106 EQILFPVLIKKGD-VVPSNYHFDTTRAHIE--LNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIV  182 (460)
T ss_pred             HHHHHHHhCCCCC-EEccCCcccchHHHHH--HcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCCCceeEEE
Confidence            9999999999999 9999999999998888  89999999988542      3454  999999999874    689999


Q ss_pred             EeCCCCCcc-ccCCHHHHHHHHHHHHhcCcEEeecccccc--cccCC-----CCCccccccCCCccEEEEecCccccccc
Q 038416          154 IINPGNPCG-NVFSYQHLQKIARTARNLGIIVIADEVYNH--LAFGS-----TPYVPMGVFGSIVPVITLGSISKRWIVP  225 (387)
Q Consensus       154 l~~p~nptG-~~~~~~~~~~l~~~~~~~~~~li~D~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~i~s~sK~~~~~  225 (387)
                      +++|+|||| ..++.+++++|.++|++||++||.|+++..  ..|..     ....++..+     ...+.|++|.+.+.
T Consensus       183 l~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i-----~~~~~s~~D~~~~S  257 (460)
T PRK13238        183 MTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEI-----AREMFSYADGLTMS  257 (460)
T ss_pred             EecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHH-----hhhhcccCcEEEEe
Confidence            999999997 999999999999999999999999997742  22221     111222211     12223444444444


Q ss_pred             ccce------EEEEeeCCCCcccchhHHHHHHhhh----h-ccCC-cchHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHH
Q 038416          226 GWRL------GWLVTSDPNGILQNSGFVDSIKGCL----N-AASH-PVTFIQAAVPRIVDET-NEAFFAKIIGLLKETAD  292 (387)
Q Consensus       226 g~r~------G~i~~~~~~~~~~~~~~~~~~~~~~----~-~~~~-~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~  292 (387)
                      |++.      |++++++       +++.++++...    . .+.+ .+...|.+++..+.+. .+.++..+    .++++
T Consensus       258 g~K~g~~~~GG~i~~~d-------~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~~~~----~~~~~  326 (460)
T PRK13238        258 AKKDAMVNIGGLLCFRD-------EDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMDEDYLAYR----IGQVE  326 (460)
T ss_pred             cccCCCCcceeEEEcCh-------HHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhChHHHHHH----HHHHH
Confidence            4432      4555543       25777776552    1 1223 3444477777666532 23444443    33568


Q ss_pred             HHHHHhhcCCCCCCCCCCCceEEEEEecCcc--cccC-CCcHHHHHHHHHHhcCeEEEcCCccCC-------------CC
Q 038416          293 ICYERIKEIPCITCPVKPQGAMFVMVKLNVS--MLED-IGDDLEFCLKLAKEESVIILPGRTVGM-------------KN  356 (387)
Q Consensus       293 ~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~-~~~~~~~~~~ll~~~gi~v~~g~~~~~-------------~~  356 (387)
                      ++.+.|++. |+.++ .|.+|+++++++...  ..+. ...+.+++..|+++.||.+.|++.|..             ..
T Consensus       327 ~l~~~L~~~-G~~~~-~p~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~  404 (460)
T PRK13238        327 YLGEGLEEA-GVPIQ-TPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAE  404 (460)
T ss_pred             HHHHHHHHC-CCCeE-ccCCceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCCCCccccCCccc
Confidence            888888887 88855 799999999988542  1111 013578999999999999999886642             26


Q ss_pred             eEEEEeeC---ChHhHHHHHHHHHHHHH
Q 038416          357 WLRIAFAA---EPATLEDGLERIKAFCQ  381 (387)
Q Consensus       357 ~~Ri~~~~---~~e~~~~~~~~l~~~~~  381 (387)
                      .+|+++..   +.+.++.+.++|+...+
T Consensus       405 ~~Rla~~rr~~~~~~~~~~~~~l~~~~~  432 (460)
T PRK13238        405 LLRLAIPRRVYTQSHMDYVAEALKAVKE  432 (460)
T ss_pred             eEEEecccccCCHHHHHHHHHHHHHHHH
Confidence            89999966   89999999999887663

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=100.00  E-value=2.6e-31  Score=248.82  Aligned_cols=321  Identities=14%  Similarity=0.150  Sum_probs=236.5

Q ss_pred             CCcHHHHHHHHHHhcCCCCC-CCCC-------CCCcHHHHHHHHHHHhhcCCCCC-CCCCEEEcCChHHHHHHHHHhh--
Q 038416           25 SDSTVAEDAVVDALRTAHYN-CYSP-------TLGVPSARRGIADYLNRDLPYKL-SPEDVYLTLGCSQAIEISLSVL--   93 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~-~y~~-------~~~~~~lr~~ia~~~~~~~~~~~-~~~~i~~~~g~~~a~~~~~~~l--   93 (387)
                      +.|+.+.+++.+.+.....+ +.+.       .....++|+.+++++      ++ ++++|++++|+++++..++.++  
T Consensus        30 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------g~~~~~~i~~~~~~t~~i~~~~~~~~~  103 (401)
T PRK10874         30 LKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLL------NAPDAKNIVWTRGTTESINLVAQSYAR  103 (401)
T ss_pred             CCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHc------CCCCCCEEEEECCHHHHHHHHHHHhhh
Confidence            57789999999888643111 0110       122567888888888      34 6789999999999999999998  


Q ss_pred             --cCCCCeEEEcCCCCcc----hHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           94 --ARPGANILIPRPGYPL----YEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        94 --~~~g~~vl~~~p~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                        .++||+|++++++|++    +...++  ..|.+++.++++  .++.+|++++++++++++++|++++|+||||.++| 
T Consensus       104 ~~~~~gd~vl~~~~~~~s~~~~~~~~~~--~~g~~v~~v~~~--~~~~~d~~~l~~~i~~~t~lv~i~~~~n~tG~~~~-  178 (401)
T PRK10874        104 PRLQPGDEIIVSEAEHHANLVPWLMVAQ--QTGAKVVKLPLG--ADRLPDVDLLPELITPRTRILALGQMSNVTGGCPD-  178 (401)
T ss_pred             ccCCCcCEEEECCcchHHHHHHHHHHHH--HhCCEEEEEecC--CCCcCCHHHHHHhcCcCcEEEEEeCCcccccCcCC-
Confidence              3789999999999865    455667  789999999874  34578999999999999999999999999999987 


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                        +++|.++|+++|+++|+|++|+...+    ...+..+.   ..+++.|++|.++++|  +|++++++        +++
T Consensus       179 --~~~i~~l~~~~g~~~ivD~a~~~g~~----~~~~~~~~---~d~~~~s~~K~~gp~G--~G~l~~~~--------~~~  239 (401)
T PRK10874        179 --LARAITLAHQAGMVVMVDGAQGAVHF----PADVQALD---IDFYAFSGHKLYGPTG--IGVLYGKS--------ELL  239 (401)
T ss_pred             --HHHHHHHHHHcCCEEEEECCcccccc----cCCchhcC---CCEEEEecccccCCCc--cEEEEEch--------HHH
Confidence              77888899999999999999974222    12232332   2378899999988777  69998865        444


Q ss_pred             HHHHhhh----------------------hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 038416          248 DSIKGCL----------------------NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCIT  305 (387)
Q Consensus       248 ~~~~~~~----------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  305 (387)
                      +.+....                      ...++++...+.++.++++...+....+..++..+.++++.+.|+++|++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~  319 (401)
T PRK10874        240 EAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALAKLPGFR  319 (401)
T ss_pred             hcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence            4432111                      012355666777777777654444556677888888899999999888887


Q ss_pred             CCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccC--------CCCeEEEEee--CChHhHHHHHHH
Q 038416          306 CPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG--------MKNWLRIAFA--AEPATLEDGLER  375 (387)
Q Consensus       306 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~--------~~~~~Ri~~~--~~~e~~~~~~~~  375 (387)
                      .. .+..+.++++.++.      .+..++...| .++||.+.+|..+.        ..+++|+|++  ++++|++.+++.
T Consensus       320 ~~-~~~~~~i~~~~~~~------~~~~~~~~~L-~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~ll~a  391 (401)
T PRK10874        320 SF-RCQDSSLLAFDFAG------VHHSDLVTLL-AEYGIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVDALVNA  391 (401)
T ss_pred             Ee-CCCCCcEEEEEECC------cCHHHHHHHH-HHCCcEEeccccchHHHHHHhCCCCEEEEEecccCCHHHHHHHHHH
Confidence            44 33334455555542      1345565554 67799999987653        3579999995  589999999999


Q ss_pred             HHHHHHHh
Q 038416          376 IKAFCQRH  383 (387)
Q Consensus       376 l~~~~~~~  383 (387)
                      |+++++.+
T Consensus       392 l~~~~~~~  399 (401)
T PRK10874        392 VDRALELL  399 (401)
T ss_pred             HHHHHHHh
Confidence            99988765

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=100.00  E-value=2.9e-31  Score=240.99  Aligned_cols=310  Identities=19%  Similarity=0.179  Sum_probs=229.3

Q ss_pred             CCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCe
Q 038416           20 GVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGAN   99 (387)
Q Consensus        20 ~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~   99 (387)
                      .|.++..+|.+.++..+++..-  .  +...-+.+|++.+|+++      +++++++++++|+.+++..++.+++++||.
T Consensus        28 ~ylgl~~~~~~~~~~~~~~~~~--~--g~~~~~~~Le~~lA~~~------g~~~e~ilv~~gg~~a~~~~~~al~~~gd~   97 (346)
T TIGR03576        28 DLTGLAGGFKIDEEDLELLETY--V--GPAIFEEKVQELGREHL------GGPEEKILVFNRTSSAILATILALEPPGRK   97 (346)
T ss_pred             ccccCCCChhHHHHHHHHHHHh--c--CCHHHHHHHHHHHHHHc------CCCcceEEEECCHHHHHHHHHHHhCCCCCE
Confidence            4557889999999999888642  1  22234567777777777      457799999999999999999999999999


Q ss_pred             EEEc---CCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHH
Q 038416          100 ILIP---RPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIART  176 (387)
Q Consensus       100 vl~~---~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~  176 (387)
                      |+++   .|+|..+...++  ..|.++...         .++++++.  .+++++|+++ +++++|.+++.+++++|+++
T Consensus        98 Vli~~~d~p~~~s~~~~~~--l~ga~~~~~---------~~l~~l~~--~~~~~lIiit-g~s~~G~v~~~~~L~~i~~l  163 (346)
T TIGR03576        98 VVHYLPEKPAHPSIPRSCK--LAGAEYFES---------DELSELKK--IDGTSLVVIT-GSTMDLKVVSEEDLKRVIKQ  163 (346)
T ss_pred             EEECCCCCCCchhHHHHHH--HcCCEEecc---------CCHHHHhh--CcCceEEEEE-CCCCCCcccCHHHHHHHHHH
Confidence            9975   578888888888  888875322         13444432  2457777664 56899999999999999999


Q ss_pred             HHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhh-
Q 038416          177 ARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLN-  255 (387)
Q Consensus       177 ~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-  255 (387)
                      |+++|+++|+||+|+.+........+...+..   .+++.|+||+  ++|+|+||+++++        ++++.+++... 
T Consensus       164 a~~~~~~livDEAy~~~~~~~~~~~~~~~~~~---divv~s~SKa--laG~r~G~v~~~~--------~li~~l~~~~~~  230 (346)
T TIGR03576       164 AKSKEAIVLVDDASGARVRRLYGQPPALDLGA---DLVVTSTDKL--MDGPRGGLLAGRK--------ELVDKIKSVGEQ  230 (346)
T ss_pred             HHHcCCEEEEECCccccccccCCCCCHHHcCC---cEEEeccchh--ccccceEEEEeCH--------HHHHHHHHhhcC
Confidence            99999999999999975432111112222222   2677899994  7899999999976        78888887754 


Q ss_pred             ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHH
Q 038416          256 AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFC  335 (387)
Q Consensus       256 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  335 (387)
                      +..+.+++.+.++..+|+...   .+.+.+.++++++.+.+.++++   . + .|.+++|+|++++.      .++.+++
T Consensus       231 ~~~s~~~~~~~aa~~aL~~~~---~~~~~~~l~~r~~~~~~~l~~~---~-~-~~~~~~f~~~~~~~------~~~~~~~  296 (346)
T TIGR03576       231 FGLEAQAPLLAAVVRALEEFE---LSRIRDAFKRKEEVYLRLFDKL---N-V-ERTPTGFVIKGVEE------EKLIEIG  296 (346)
T ss_pred             cccCccHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHhC---C-C-CcCCCeEEEEeCCC------CCHHHHH
Confidence            344567778888888886532   2455677778887777777643   3 3 23445589988863      1345788


Q ss_pred             HHHHHhcCeEEEcCCccC-CCCeEEEEeeCChH---hHHHHHHHHHHHH
Q 038416          336 LKLAKEESVIILPGRTVG-MKNWLRIAFAAEPA---TLEDGLERIKAFC  380 (387)
Q Consensus       336 ~~ll~~~gi~v~~g~~~~-~~~~~Ri~~~~~~e---~~~~~~~~l~~~~  380 (387)
                      ..+++++||.+.||..|. .++|+||+++.+++   +.+.+++.|++.+
T Consensus       297 ~~ll~~~gV~v~~~~~f~~~~~~vRis~~~~~~~~~~~~~~~~al~~~~  345 (346)
T TIGR03576       297 LDLLRNYGIITITAVGMPGASKTLRFDLAAKDAERIGDDYLVEAVKDSL  345 (346)
T ss_pred             HHHHHhCCEEEeCCcccCCCCCeEEEEEecChHHhcCHHHHHHHHHhcc
Confidence            888999999999998774 47899999998765   7888888887654

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=100.00  E-value=6.2e-31  Score=246.00  Aligned_cols=321  Identities=15%  Similarity=0.157  Sum_probs=234.4

Q ss_pred             CCcHHHHHHHHHHhcCCCCC-CCCCC-------CCcHHHHHHHHHHHhhcCCCCC-CCCCEEEcCChHHHHHHHHHhh--
Q 038416           25 SDSTVAEDAVVDALRTAHYN-CYSPT-------LGVPSARRGIADYLNRDLPYKL-SPEDVYLTLGCSQAIEISLSVL--   93 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~-~y~~~-------~~~~~lr~~ia~~~~~~~~~~~-~~~~i~~~~g~~~a~~~~~~~l--   93 (387)
                      +.|+.+.+++.+.+.....+ ++...       ....++|+.++++++      . ++++|++|+|+++++..++.++  
T Consensus        27 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g------~~~~~~i~~t~g~t~~l~~~~~~~~~  100 (398)
T TIGR03392        27 LKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLN------APDAENIVWTRGTTESINLVAQSYAR  100 (398)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhC------CCCCCeEEEeCChHHHHHHHHHHhhh
Confidence            57889999999887532111 12211       124568888998883      4 4689999999999999999998  


Q ss_pred             --cCCCCeEEEcCCCCcc----hHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           94 --ARPGANILIPRPGYPL----YEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        94 --~~~g~~vl~~~p~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                        .++||+|++++|+|++    +...++  ..|.+++.++++.  ++.+|+++++++++++++++++++|+||||..++ 
T Consensus       101 ~~~~~gd~Vl~~~~~~~s~~~~~~~~~~--~~g~~v~~v~~~~--~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~-  175 (398)
T TIGR03392       101 PRLQPGDEIIVSEAEHHANLIPWLMVAQ--QTGAKVVKLPIGA--DLLPDIRQLPELLTPRTRILALGQMSNVTGGCPD-  175 (398)
T ss_pred             ccCCCCCEEEECCcchhHHHHHHHHHHH--HcCcEEEEEecCC--CCCcCHHHHHHHhccCceEEEEECccccccccCC-
Confidence              4789999999999976    455667  7899999998753  3468999999999989999999999999999987 


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                        +++|.++|+++|+++|+|++|+...+    ...+.....   .+++.|.+|.++++|  +||++.++        +++
T Consensus       176 --~~~i~~~~~~~~~~~ivD~a~~~~~~----~~~~~~~~~---d~~~~s~~K~~gp~G--~G~l~~~~--------~~~  236 (398)
T TIGR03392       176 --LARAITLAHQYGAVVVVDGAQGVVHG----PPDVQALDI---DFYAFSGHKLYGPTG--IGVLYGKT--------ELL  236 (398)
T ss_pred             --HHHHHHHHHHcCCEEEEEhhhhcCCC----CCChhhcCC---CEEEEecccccCCCc--eEEEEEcH--------HHH
Confidence              77889999999999999999975322    122322322   377889999887766  89999875        344


Q ss_pred             HHHHhhh---------------------h-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 038416          248 DSIKGCL---------------------N-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCIT  305 (387)
Q Consensus       248 ~~~~~~~---------------------~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  305 (387)
                      +.+....                     . -.++++.....++.++++...+..+.+..++..+.++++.+.|++++++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l~g~~  316 (398)
T TIGR03392       237 EAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQLPGFR  316 (398)
T ss_pred             hhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence            4332110                     0 12355555667777766654444556677888888999999998888877


Q ss_pred             CCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccC--------CCCeEEEEee--CChHhHHHHHHH
Q 038416          306 CPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG--------MKNWLRIAFA--AEPATLEDGLER  375 (387)
Q Consensus       306 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~--------~~~~~Ri~~~--~~~e~~~~~~~~  375 (387)
                      ....+. ..++++.++.      .+..++...| .++||.+.+|..+.        .++++|+|++  ++++|++.+++.
T Consensus       317 ~~~~~~-~~i~~~~~~~------~~~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~  388 (398)
T TIGR03392       317 SFRCPG-SSLLAFDFAG------VHHSDLAALL-AESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVDALVDA  388 (398)
T ss_pred             EeCCCC-CcEEEEEeCC------cCHHHHHHHH-HhCCEEEecCccchHHHHHHhCCCCEEEEEeeccCCHHHHHHHHHH
Confidence            442333 3455555542      1345666655 67799999987653        3579999995  689999999999


Q ss_pred             HHHHHHHh
Q 038416          376 IKAFCQRH  383 (387)
Q Consensus       376 l~~~~~~~  383 (387)
                      |+++++++
T Consensus       389 l~~~~~~~  396 (398)
T TIGR03392       389 VGAALELL  396 (398)
T ss_pred             HHHHHHHh
Confidence            99988764

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PLN02822 serine palmitoyltransferase

Probab=100.00  E-value=1.3e-30  Score=246.58  Aligned_cols=337  Identities=15%  Similarity=0.127  Sum_probs=240.6

Q ss_pred             CCCCCcHHHHHHHHHHhcC-CC-----CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC
Q 038416           22 SLLSDSTVAEDAVVDALRT-AH-----YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR   95 (387)
Q Consensus        22 ~~~~~~~~v~~a~~~~~~~-~~-----~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~   95 (387)
                      +++..++.+.+++.+++++ +.     ...|++..+..+|++.|++++.       .++.|++++|.+ ++..++.++++
T Consensus       120 lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~-------~~~~i~~s~G~~-a~~sai~a~~~  191 (481)
T PLN02822        120 LGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLG-------TPDSILYSYGLS-TIFSVIPAFCK  191 (481)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhC-------CCCEEEECCHHH-HHHHHHHHhCC
Confidence            4777899999999999986 21     1135555568999999999983       346788888766 67889999999


Q ss_pred             CCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc--cCc-eEEEEeCCCCCccccCCHHHHHH
Q 038416           96 PGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD--ENT-VAIVIINPGNPCGNVFSYQHLQK  172 (387)
Q Consensus        96 ~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~-~~v~l~~p~nptG~~~~~~~~~~  172 (387)
                      +||.|++....|.++...+.  ..+.+++.++.++.+++..+++++++...  +++ ++|++..+++++|.++|   +++
T Consensus       192 ~gd~Ii~d~~~H~s~~~~~~--ls~~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~---L~~  266 (481)
T PLN02822        192 KGDIIVADEGVHWGIQNGLY--LSRSTIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAP---LDE  266 (481)
T ss_pred             CCCEEEEeCCccHHHHHHHH--HcCCeEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccC---HHH
Confidence            99999998888877777777  77888888876533333333333332221  234 67777788899999988   799


Q ss_pred             HHHHHHhcCcEEeecccccccccCCCCCccccc--cCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHH
Q 038416          173 IARTARNLGIIVIADEVYNHLAFGSTPYVPMGV--FGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSI  250 (387)
Q Consensus       173 l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~  250 (387)
                      |.++|++||+++|+||+|+...++..+......  +...+..++++||+|++++.|   ||+++++        ++++.+
T Consensus       267 i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~~G---G~i~g~~--------~ii~~~  335 (481)
T PLN02822        267 IVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEG---GFCTGSA--------RVVDHQ  335 (481)
T ss_pred             HHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhhhCC---eEEEcCH--------HHHHHH
Confidence            999999999999999999965555222211111  222345688999999998888   9999876        677777


Q ss_pred             Hhhh-hccCC--cchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccC
Q 038416          251 KGCL-NAASH--PVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLED  327 (387)
Q Consensus       251 ~~~~-~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  327 (387)
                      +... ...++  .++..+.++.++|+.. +. ..+..++++++++++++.|++.+++.+ ..+..++++++.++......
T Consensus       336 ~~~~~~~~fsa~lPp~~~~Aa~~aL~~l-~~-~~~~~~~l~~~~~~l~~~L~~~~g~~~-~~~~~spi~~l~l~~~~~~~  412 (481)
T PLN02822        336 RLSSSGYVFSASLPPYLASAAITAIDVL-ED-NPSVLAKLKENIALLHKGLSDIPGLSI-GSNTLSPIVFLHLEKSTGSA  412 (481)
T ss_pred             HhcCCceeeccccCHHHHHHHHHHHHHH-Hh-CHHHHHHHHHHHHHHHHHHHhcCCccc-CCCCCCCEEEEEeCCCcccc
Confidence            6443 22333  3456667766677542 22 256778899999999999998777774 35677888888886320000


Q ss_pred             CCc---HHHHHHHHHHhcCeEEEcCC--ccCC---CCeEEEEee--CChHhHHHHHHHHHHHHHHhhh
Q 038416          328 IGD---DLEFCLKLAKEESVIILPGR--TVGM---KNWLRIAFA--AEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       328 ~~~---~~~~~~~ll~~~gi~v~~g~--~~~~---~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      ..+   ..+++..+++++||.+.++.  .|..   +.++|++++  .++++|++++++|++++++..+
T Consensus       413 ~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~~~~  480 (481)
T PLN02822        413 KEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKRVAASVLK  480 (481)
T ss_pred             cchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            001   24678888878899999763  2321   357999884  6899999999999999988654

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.98  E-value=1.3e-29  Score=237.52  Aligned_cols=320  Identities=17%  Similarity=0.180  Sum_probs=232.2

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCC-C-------CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh---
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYS-P-------TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL---   93 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~-~-------~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l---   93 (387)
                      +.|+.+++++.+.+.....+... .       .....++|+.++++++.     .++++|++|+|++++++.++.++   
T Consensus        34 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~-----~~~~~v~~t~g~t~~l~~~~~~~~~~  108 (406)
T PRK09295         34 QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINA-----RSAEELVFVRGTTEGINLVANSWGNS  108 (406)
T ss_pred             cCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCc-----CCCCeEEEeCCHHHHHHHHHHHhhhh
Confidence            67889999998888642111111 1       11256788888888832     25689999999999999999874   


Q ss_pred             -cCCCCeEEEcCCCCcc----hHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           94 -ARPGANILIPRPGYPL----YEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        94 -~~~g~~vl~~~p~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                       .++||+|+++.++|++    +...++  ..|.+++.++++.  ++.+|++++++++++++++|++++|+||||..+|  
T Consensus       109 ~~~~gd~vl~~~~~~~s~~~~~~~~~~--~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~t~lv~l~~~~n~tG~~~~--  182 (406)
T PRK09295        109 NVRAGDNIIISEMEHHANIVPWQMLCA--RVGAELRVIPLNP--DGTLQLETLPALFDERTRLLAITHVSNVLGTENP--  182 (406)
T ss_pred             cCCCcCEEEECcchhhHHHHHHHHHHH--HcCcEEEEEecCC--CCCCCHHHHHHhcCCCcEEEEEecchhcccccCC--
Confidence             5789999999998864    455566  7899999998753  4468999999999889999999999999999988  


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD  248 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~  248 (387)
                       +++|.++|+++|+++|+|++|+...    ...++.....   .+++.|++|.+|++|  +|++++++        ++.+
T Consensus       183 -~~~i~~~~~~~~~~vivD~a~~~g~----~~~~~~~~~~---D~~~~s~~K~~gp~G--~G~l~~~~--------~~~~  244 (406)
T PRK09295        183 -LAEMIALAHQHGAKVLVDGAQAVMH----HPVDVQALDC---DFYVFSGHKLYGPTG--IGILYVKE--------ALLQ  244 (406)
T ss_pred             -HHHHHHHHHHcCCEEEEEcccccCc----cccCchhcCC---CEEEeehhhccCCCC--cEEEEEch--------HhHh
Confidence             7888889999999999999997532    2233333333   388899999887776  79998875        2322


Q ss_pred             HHHh-----------------------hhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 038416          249 SIKG-----------------------CLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCIT  305 (387)
Q Consensus       249 ~~~~-----------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  305 (387)
                      .+..                       .+.-.++++..+..++.++++...+..++...++.+++++++++.|.+++++.
T Consensus       245 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~  324 (406)
T PRK09295        245 EMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESVPDLT  324 (406)
T ss_pred             hCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence            2210                       00113467777788888887765555567777888889999999998888877


Q ss_pred             CCCCCC-ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccC--------CCCeEEEEee--CChHhHHHHHH
Q 038416          306 CPVKPQ-GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG--------MKNWLRIAFA--AEPATLEDGLE  374 (387)
Q Consensus       306 ~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~--------~~~~~Ri~~~--~~~e~~~~~~~  374 (387)
                      +. .|. ....+.+.++.      .+..++.. .+.++||.+..|..+.        .++++|+|++  ++++|++.+++
T Consensus       325 ~~-~~~~~~~iv~~~~~~------~~~~~~~~-~L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did~l~~  396 (406)
T PRK09295        325 LY-GPQNRLGVIAFNLGK------HHAYDVGS-FLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVA  396 (406)
T ss_pred             Ee-CCCCCceEEEEEECC------cCHHHHHH-HHHhCCeEEeccccchHHHHHHHCCCCEEEEEccCCCCHHHHHHHHH
Confidence            54 332 12233444442      13445555 4578899999887543        2468999995  58999999999


Q ss_pred             HHHHHHH
Q 038416          375 RIKAFCQ  381 (387)
Q Consensus       375 ~l~~~~~  381 (387)
                      .|+++.+
T Consensus       397 ~l~~i~~  403 (406)
T PRK09295        397 GLQRIHR  403 (406)
T ss_pred             HHHHHHH
Confidence            9988654

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.98  E-value=2.2e-29  Score=236.14  Aligned_cols=321  Identities=19%  Similarity=0.214  Sum_probs=230.6

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCC-C-------CCCcHHHHHHHHHHHhhcCCCCCC-CCCEEEcCChHHHHHHHHHhh--
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYS-P-------TLGVPSARRGIADYLNRDLPYKLS-PEDVYLTLGCSQAIEISLSVL--   93 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~-~-------~~~~~~lr~~ia~~~~~~~~~~~~-~~~i~~~~g~~~a~~~~~~~l--   93 (387)
                      ++|+.+.+++.+.+.....+... .       .....++|+.++++++      .+ +++|++++|+++++..++.++  
T Consensus        29 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~------~~~~~~v~~~~g~t~~l~~~~~~~~~  102 (403)
T TIGR01979        29 QKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFIN------AASDEEIVFTRGTTESINLVAYSWGD  102 (403)
T ss_pred             CCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhC------cCCCCeEEEeCCHHHHHHHHHHHhhh
Confidence            57788999998877542111010 0       1135588889999883      44 679999999999999998875  


Q ss_pred             --cCCCCeEEEcCCCCcch----HHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           94 --ARPGANILIPRPGYPLY----EIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        94 --~~~g~~vl~~~p~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                        .++||+|+++++.|++.    ...+.  ..|.++..++++  .++.+++++++++++++++++++++++||||..+| 
T Consensus       103 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~--~~g~~~~~v~~~--~~~~~~~~~l~~~i~~~~~lv~~~~~~~~tG~~~~-  177 (403)
T TIGR01979       103 SNLKAGDEIVISEMEHHANIVPWQLLAE--RTGATLKFIPLD--DDGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNP-  177 (403)
T ss_pred             hcCCCCCEEEECcchhhHHHHHHHHHHH--hcCcEEEEEecC--CCCCCCHHHHHHHhccCCeEEEEEcccccccccCC-
Confidence              57899999999988763    45556  689999999875  34568999999999999999999999999999988 


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                        +++|.++|+++|+++|+|++|+..    .....+..+.   ..+++.|++|.+|++|  +|++++++        +++
T Consensus       178 --~~~i~~~~~~~~~~~ivD~a~~~g----~~~~~~~~~~---~d~~~~s~~K~~gp~G--~g~l~~~~--------~~~  238 (403)
T TIGR01979       178 --VEEIAKLAHQVGAKVLVDGAQAVP----HMPVDVQALD---CDFYVFSGHKMYGPTG--IGVLYGKE--------ELL  238 (403)
T ss_pred             --HHHHHHHHHHcCCEEEEEchhhcC----ccccCccccC---CCEEEEecccccCCCC--ceEEEEch--------HHH
Confidence              788889999999999999999752    2222233332   3488899999987666  89998865        333


Q ss_pred             HHHHhh---------------------hh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 038416          248 DSIKGC---------------------LN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCIT  305 (387)
Q Consensus       248 ~~~~~~---------------------~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  305 (387)
                      +.+...                     .. ..++++.....++.++++...+..+++..++..+.++.+.+.|+.+++++
T Consensus       239 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~  318 (403)
T TIGR01979       239 EQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEIPGLR  318 (403)
T ss_pred             hcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence            333211                     00 01245555666666666644344466778888889999999998888887


Q ss_pred             CCCCCC----ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCc--------cCCCCeEEEEee--CChHhHHH
Q 038416          306 CPVKPQ----GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRT--------VGMKNWLRIAFA--AEPATLED  371 (387)
Q Consensus       306 ~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~--------~~~~~~~Ri~~~--~~~e~~~~  371 (387)
                      +. .|.    .+.++.+.++.      .+..++.. .++++||.+.+|..        ++.++++|||++  ++++|+++
T Consensus       319 ~~-~~~~~~~~~~~v~~~~~~------~~~~~~~~-~L~~~gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t~~di~~  390 (403)
T TIGR01979       319 IY-GPRDAEDRGGIISFNVEG------VHPHDVGT-ILDEEGIAVRSGHHCAQPLMRRFGVPATCRASFYIYNTEEDIDA  390 (403)
T ss_pred             Ee-CCCCccccCceEEEEeCC------cCHHHHHH-HHhhCCEEEcchhhhhHHHHHHhCCCCEEEEEeccCCCHHHHHH
Confidence            54 332    13455555542      13445554 55778999988753        334678999996  48899999


Q ss_pred             HHHHHHHHHHHh
Q 038416          372 GLERIKAFCQRH  383 (387)
Q Consensus       372 ~~~~l~~~~~~~  383 (387)
                      +++.|+++++.+
T Consensus       391 l~~~l~~~~~~~  402 (403)
T TIGR01979       391 LVEALKKVRKFF  402 (403)
T ss_pred             HHHHHHHHHHHh
Confidence            999999887754

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.98  E-value=1.5e-29  Score=233.52  Aligned_cols=320  Identities=16%  Similarity=0.108  Sum_probs=228.6

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCCC-CCcHHHHHHHHHHHhhcCCCCCCC-CCEEEcCChHHHHHHHHHhhcCCCCeEE
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSPT-LGVPSARRGIADYLNRDLPYKLSP-EDVYLTLGCSQAIEISLSVLARPGANIL  101 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~~-~~~~~lr~~ia~~~~~~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~g~~vl  101 (387)
                      .++|+.+.+++.+....   ..|+.. .-..++++.+++++      ++++ +.+++++|+++++..++.+++++||+|+
T Consensus         8 ~~~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~la~~~------g~~~~~~~~~~~~~t~al~~~~~~~~~~g~~vl   78 (356)
T cd06451           8 SNVPPRVLKAMNRPMLG---HRSPEFLALMDEILEGLRYVF------QTENGLTFLLSGSGTGAMEAALSNLLEPGDKVL   78 (356)
T ss_pred             cCCCHHHHHHhCCCccC---CCCHHHHHHHHHHHHHHHHHh------cCCCCCEEEEecCcHHHHHHHHHHhCCCCCEEE
Confidence            47889999988765422   122221 11456677777777      3434 4577888899999999999999999999


Q ss_pred             EcCCCCcc--hHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCccccCCHHHHHHHHHHHH
Q 038416          102 IPRPGYPL--YEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCGNVFSYQHLQKIARTAR  178 (387)
Q Consensus       102 ~~~p~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~  178 (387)
                      ++.++|++  +...++  ..|.+++.++.++  ++.+|++++++++++ ++++|++++|+||+|..++   +++|.++|+
T Consensus        79 ~~~~~~~~~~~~~~~~--~~g~~~~~v~~~~--~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~---~~~i~~~a~  151 (356)
T cd06451          79 VGVNGVFGDRWADMAE--RYGADVDVVEKPW--GEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNP---LEGIGALAK  151 (356)
T ss_pred             EecCCchhHHHHHHHH--HhCCCeEEeecCC--CCCCCHHHHHHHHhccCCCEEEEeccCCCcccccC---HHHHHHHHH
Confidence            99988876  456677  7899999998753  357899999999987 8999999999999999988   677888889


Q ss_pred             hcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHh---hh-
Q 038416          179 NLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKG---CL-  254 (387)
Q Consensus       179 ~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~---~~-  254 (387)
                      ++|+++|+|++++.    |....++.....   .+++.|.+|+++.+ .++||++.++        ++++.+..   .. 
T Consensus       152 ~~~~~li~D~~~~~----g~~~~~~~~~~~---d~~~~s~~K~l~~p-~g~G~l~~~~--------~~~~~~~~~~~~~~  215 (356)
T cd06451         152 KHDALLIVDAVSSL----GGEPFRMDEWGV---DVAYTGSQKALGAP-PGLGPIAFSE--------RALERIKKKTKPKG  215 (356)
T ss_pred             hcCCEEEEeeehhc----cCccccccccCc---cEEEecCchhccCC-CCcceeEECH--------HHHHHHHhcCCCCc
Confidence            99999999999873    111222222222   26677899997654 3589999875        45555542   00 


Q ss_pred             ----------------hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC--ceEEE
Q 038416          255 ----------------NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ--GAMFV  316 (387)
Q Consensus       255 ----------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~g~~~  316 (387)
                                      ....+++...+.++.++++...+..+++..++..++++++.+.|+++ +++....+.  .+.+.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~  294 (356)
T cd06451         216 FYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEAL-GLKLLAKPELRSPTVT  294 (356)
T ss_pred             eeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCCceE
Confidence                            11224455555666666665455667778888889999999999887 676442222  33445


Q ss_pred             EEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHH
Q 038416          317 MVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~  381 (387)
                      |+.++..     .+..+++..+.+++||.+.+|..+..++++|++++  +++++++++++.|+++++
T Consensus       295 ~~~~~~~-----~~~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~~~~  356 (356)
T cd06451         295 AVLVPEG-----VDGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEEALK  356 (356)
T ss_pred             EEECCCC-----CCHHHHHHHHHHhCCEEEecccccccCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence            6665431     24567777775545999999876555679999995  579999999999988763

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.98  E-value=4.3e-29  Score=235.21  Aligned_cols=325  Identities=17%  Similarity=0.212  Sum_probs=235.1

Q ss_pred             CCcHHHHHHHHHHhcCCCCC-----CCCC---CCCcHHHHHHHHHHHhhcCCCCCC-CCCEEEcCChHHHHHHHHHhh--
Q 038416           25 SDSTVAEDAVVDALRTAHYN-----CYSP---TLGVPSARRGIADYLNRDLPYKLS-PEDVYLTLGCSQAIEISLSVL--   93 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~-----~y~~---~~~~~~lr~~ia~~~~~~~~~~~~-~~~i~~~~g~~~a~~~~~~~l--   93 (387)
                      +.|+.+++++.+.+.....+     +|..   .....++|+.++++++      +. +++|++|+|+++++..+++++  
T Consensus        43 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~~~~v~~t~g~t~al~~i~~~~~~  116 (424)
T PLN02855         43 QKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFIN------ASTSREIVFTRNATEAINLVAYTWGL  116 (424)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcC------CCCCCEEEEeCCHHHHHHHHHHHhhh
Confidence            67888999998877542111     1110   1124688889999884      43 579999999999999999863  


Q ss_pred             --cCCCCeEEEcCCCCcc----hHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           94 --ARPGANILIPRPGYPL----YEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        94 --~~~g~~vl~~~p~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                        .++||+|+++.+.|++    +...++  ..|.++..++++.+  ..+|++++++++++++++|++++++||||..+| 
T Consensus       117 ~~~~~gd~vl~~~~~~~s~~~~~~~~a~--~~g~~v~~v~~~~~--~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~-  191 (424)
T PLN02855        117 ANLKPGDEVILSVAEHHSNIVPWQLVAQ--KTGAVLKFVGLTPD--EVLDVEQLKELLSEKTKLVATHHVSNVLGSILP-  191 (424)
T ss_pred             hcCCCcCEEEECCCccHHHHHHHHHHHH--HcCCEEEEEecCCC--CCcCHHHHHHHhccCceEEEEeCccccccccCC-
Confidence              5789999999998875    455566  78999999987543  358999999999889999999999999999998 


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                        +++|+++|+++|+++|+|++|+.    +.....+..+..   .+++.|++|.+|++|  +|++++++        +++
T Consensus       192 --~~~I~~l~~~~g~~vivD~a~~~----g~~~~~~~~~~~---d~~~~s~~K~~gp~G--~G~l~~~~--------~~~  252 (424)
T PLN02855        192 --VEDIVHWAHAVGAKVLVDACQSV----PHMPVDVQTLGA---DFLVASSHKMCGPTG--IGFLWGKS--------DLL  252 (424)
T ss_pred             --HHHHHHHHHHcCCEEEEEhhhhc----CCcCCCchhcCC---CEEEeecccccCCCc--cEEEEEch--------hhh
Confidence              67888899999999999999963    222223333333   378999999877666  89999875        233


Q ss_pred             HHHHhh---------------------h-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 038416          248 DSIKGC---------------------L-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCIT  305 (387)
Q Consensus       248 ~~~~~~---------------------~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  305 (387)
                      +.+...                     . .-.++++.....++..+++...+..++++.++..+.++.+++.|++++++.
T Consensus       253 ~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~  332 (424)
T PLN02855        253 ESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSVPGVR  332 (424)
T ss_pred             hcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence            322111                     0 012345666677777777655455678888889999999999998888877


Q ss_pred             CCCCCC-----ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCcc--------CCCCeEEEEee--CChHhHH
Q 038416          306 CPVKPQ-----GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTV--------GMKNWLRIAFA--AEPATLE  370 (387)
Q Consensus       306 ~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~--------~~~~~~Ri~~~--~~~e~~~  370 (387)
                      +.....     .+.++.+.++.      .+..++...|.+++||.+..|..+        +.++++|+|++  ++++|++
T Consensus       333 i~~~~~~~~~~r~~~v~~~~~~------~~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~~di~  406 (424)
T PLN02855        333 IYGPKPSEGVGRAALCAFNVEG------IHPTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNTKEEVD  406 (424)
T ss_pred             EeCCCcccccCcccEEEEEECC------cCHHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEEEEeccCCCHHHHH
Confidence            442211     13355555542      134566666645559999987654        23578999995  6899999


Q ss_pred             HHHHHHHHHHHHhhh
Q 038416          371 DGLERIKAFCQRHAK  385 (387)
Q Consensus       371 ~~~~~l~~~~~~~~~  385 (387)
                      ++++.|+++++.++.
T Consensus       407 ~l~~~l~~~~~~~~~  421 (424)
T PLN02855        407 AFIHALKDTIAFFSS  421 (424)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999988754

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.97  E-value=1.1e-28  Score=230.71  Aligned_cols=328  Identities=16%  Similarity=0.087  Sum_probs=229.7

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCC---Cc----HHHHHHHHHHHhhcCCCCCCCCCEEEcCC
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTL---GV----PSARRGIADYLNRDLPYKLSPEDVYLTLG   81 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~---~~----~~lr~~ia~~~~~~~~~~~~~~~i~~~~g   81 (387)
                      .+++.+.++   +++++.+|.+.+++.+++.... .+|+...   |.    .+||+.+|++++        .+++++++|
T Consensus        39 ~~i~~~~~~---~lg~~~~~~v~~~~~~~~~~~~-~~~~~s~~~~G~~~~~~~le~~ia~~~g--------~~~~ii~~~  106 (393)
T TIGR01822        39 EVLNFCANN---YLGLSSHPDLIQAAKDALDEHG-FGMSSVRFICGTQDIHKELEAKIAAFLG--------TEDTILYAS  106 (393)
T ss_pred             eEEEeeCCC---ccccCCCHHHHHHHHHHHHHhC-CCCCCcCcccCChHHHHHHHHHHHHHhC--------CCcEEEECc
Confidence            345555553   4588899999999999987522 2454443   54    788999999983        357788889


Q ss_pred             hHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc------CceEEEEe
Q 038416           82 CSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE------NTVAIVII  155 (387)
Q Consensus        82 ~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~  155 (387)
                      +++|+..++.+++++||.|+++.|+|.++...++  ..+.+...++       ..|++++++++++      ++++|++.
T Consensus       107 ~~~a~~~~~~~l~~~gd~vi~~~~~~~s~~~~~~--~~~~~~~~~~-------~~d~~~l~~~i~~~~~~~~~~~~v~~~  177 (393)
T TIGR01822       107 CFDANGGLFETLLGAEDAIISDALNHASIIDGVR--LCKAKRYRYA-------NNDMADLEAQLKEARAAGARHRLIATD  177 (393)
T ss_pred             hHHHHHHHHHHhCCCCCEEEEeccccHHHHHHHH--hcCCceEEeC-------CCCHHHHHHHHHhhhhcCCCceEEEEe
Confidence            9999999999999999999999999999888777  7776654432       2588898888764      67788888


Q ss_pred             CCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCC--CCccccccCCCccEEEEecCcccccccccceEEEE
Q 038416          156 NPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGST--PYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLV  233 (387)
Q Consensus       156 ~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~  233 (387)
                      +++||||.+.+   +++|+++|++||+++|+|++|+.......  .......+. .+..++++|+||++  +|+|+||++
T Consensus       178 ~v~~~tG~~~~---l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~-~~~di~~~s~sK~l--~g~r~G~~~  251 (393)
T TIGR01822       178 GVFSMDGVIAP---LDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVM-GRVDIITGTLGKAL--GGASGGFTT  251 (393)
T ss_pred             CCccCCCCcCC---HHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCC-CCCeEEEEEChHHh--hCCCcEEEE
Confidence            88999999976   88999999999999999999963222211  111111111 13458899999985  467999999


Q ss_pred             eeCCCCcccchhHHHHHHhhh-h--ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 038416          234 TSDPNGILQNSGFVDSIKGCL-N--AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKP  310 (387)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  310 (387)
                      +++        ++++.++... .  ...+.++..+.++.++++..  ...++..++++++++++.+.|++. ++.+. .+
T Consensus       252 ~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~  319 (393)
T TIGR01822       252 ARK--------EVVELLRQRSRPYLFSNSLPPAVVGASIKVLEML--EASNELRDRLWANTRYFRERMEAA-GFDIK-PA  319 (393)
T ss_pred             eCH--------HHHHHHHHhCccceecCCCCHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHc-CCCCC-CC
Confidence            875        6777776532 1  22233444445555555432  224567788889999999999876 67633 33


Q ss_pred             CceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccC----CCCeEEEEee--CChHhHHHHHHHHHHHHHHh
Q 038416          311 QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG----MKNWLRIAFA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       311 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~----~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                      . +.++.+.++..     .+..++...|++ +||.+. +..|.    ....+|++++  .+++++++++++|++++++.
T Consensus       320 ~-~~~~~i~~~~~-----~~~~~l~~~L~~-~gI~v~-~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~~~  390 (393)
T TIGR01822       320 D-HPIIPVMLYDA-----VLAQRFARRLLE-EGIYVT-GFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIGREL  390 (393)
T ss_pred             C-CCEEEEEeCCH-----HHHHHHHHHHHH-CCeeEe-eeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence            3 33444444321     134567777755 599987 44442    1246999884  57999999999999987754

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.97  E-value=5.6e-29  Score=230.22  Aligned_cols=327  Identities=14%  Similarity=0.092  Sum_probs=227.9

Q ss_pred             cccccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCC--CCCC----CCCCcHHHHHHHHHHHhhcCCCCCCCCCEEE
Q 038416            5 KGQETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHY--NCYS----PTLGVPSARRGIADYLNRDLPYKLSPEDVYL   78 (387)
Q Consensus         5 ~g~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~y~----~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~   78 (387)
                      .|++ +++++.|++   .+++.++.+.+++++++.....  ..|.    ......++++.++++++       .++.+++
T Consensus        14 ~g~~-~id~~~~~~---~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~-------~~~~i~~   82 (360)
T TIGR00858        14 DGRR-LLNFSSNDY---LGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKG-------TEAALLF   82 (360)
T ss_pred             CCce-EEecccCCc---ccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC-------CCCEEEE
Confidence            3444 455555542   2556779999999998865111  1111    11234557777777763       3456777


Q ss_pred             cCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc----CceEEEE
Q 038416           79 TLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE----NTVAIVI  154 (387)
Q Consensus        79 ~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~v~l  154 (387)
                      ++| ++++..++.+++++||+|+++.|+|..+...+.  ..|.++..++.       .|++.+++.++.    +++++++
T Consensus        83 ~~G-~~~~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~--~~g~~~~~~~~-------~d~~~l~~~~~~~~~~~~~~v~~  152 (360)
T TIGR00858        83 SSG-YLANVGVISALVGKGDLILSDALNHASLIDGCR--LSGARVRRYRH-------NDVEHLERLLEKNRGERRKLIVT  152 (360)
T ss_pred             Cch-HHHHHHHHHHhCCCCCEEEEEccccHHHHHHHH--hcCCceEEecC-------CCHHHHHHHHHHcccCCCeEEEE
Confidence            776 455556778888999999999999999988888  88888877653       478888888754    4677888


Q ss_pred             eCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCC--ccccccCCCccEEEEecCcccccccccceEEE
Q 038416          155 INPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPY--VPMGVFGSIVPVITLGSISKRWIVPGWRLGWL  232 (387)
Q Consensus       155 ~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i  232 (387)
                      .+++|+||...+   +++|.++|+++|+++|+||+|+.+.++....  .....+..++++++++|+||+|+++|   ||+
T Consensus       153 ~~~~~~~G~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~g---G~~  226 (360)
T TIGR00858       153 DGVFSMDGDIAP---LPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYG---AYV  226 (360)
T ss_pred             eCCccCCCCCcC---HHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhccC---cEE
Confidence            888999998866   7889999999999999999998655443211  22222334467899999999998766   999


Q ss_pred             EeeCCCCcccchhHHHHHHhhhh---ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 038416          233 VTSDPNGILQNSGFVDSIKGCLN---AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVK  309 (387)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  309 (387)
                      ++++        ++++.+.....   ...+.++..+.++.++++...  ......+++.++++.+.+.|+++ ++. + .
T Consensus       227 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~-~~~-~-~  293 (360)
T TIGR00858       227 AGSQ--------ALIDYLINRARTLIFSTALPPAVAAAALAALELIQ--EEPWRREKLLALIARLRAGLEAL-GFT-L-M  293 (360)
T ss_pred             EcCH--------HHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHHHHc-CCc-c-C
Confidence            8865        67776654322   122344555555556665322  23456788999999999999987 566 3 3


Q ss_pred             CCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC---CCeEEEEee--CChHhHHHHHHHHH
Q 038416          310 PQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM---KNWLRIAFA--AEPATLEDGLERIK  377 (387)
Q Consensus       310 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---~~~~Ri~~~--~~~e~~~~~~~~l~  377 (387)
                      +..++++|+.++..     .+..++...+ .++||.+.++..+..   .+++||+++  .++++++.++++|+
T Consensus       294 ~~~~~~~~~~~~~~-----~~~~~~~~~l-~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l~  360 (360)
T TIGR00858       294 PSCTPIVPVIIGDN-----ASALALAEEL-QQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK  360 (360)
T ss_pred             CCCCCEEEEEeCCH-----HHHHHHHHHH-HHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence            55677888887531     1345676666 566999988655432   468999996  48999999998763

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.97  E-value=1.5e-28  Score=227.11  Aligned_cols=323  Identities=13%  Similarity=0.116  Sum_probs=221.7

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCC----CC---CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCC
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCY----SP---TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARP   96 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y----~~---~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~   96 (387)
                      -.+...+.+++.+........++    ..   ......+++.+|++++        .+.+.+++|+++++..++.+++++
T Consensus        18 g~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~lA~~~g--------~~~~~i~~g~~~a~~~~~~~l~~~   89 (370)
T TIGR02539        18 GVLTEAARKALVEFGDGYSVCDFCGGRLDQITKPPIHDFLEDLAEFLG--------MDEARVTHGAREGKFAVMHALCKE   89 (370)
T ss_pred             CCCcHHHHHHHHHHhhccccccccccccccccchHHHHHHHHHHHHhC--------CCceEEECChHHHHHHHHHHhhCC
Confidence            35777788888776543211111    10   1135677888888882        346777899999999999999999


Q ss_pred             CCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc-------CceEEEEeCCCCCccccCCHHH
Q 038416           97 GANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE-------NTVAIVIINPGNPCGNVFSYQH  169 (387)
Q Consensus        97 g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~v~l~~p~nptG~~~~~~~  169 (387)
                      ||.|+++.+.|++....++  ..|.+++.++.+.+.++.+|++++++++++       ++++|++++|+||+|...+   
T Consensus        90 gd~Vl~~~~~h~s~~~~~~--~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~---  164 (370)
T TIGR02539        90 GDWVVLDGLAHYTSYVAAE--RAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD---  164 (370)
T ss_pred             CCEEEECCcccHHHHHHHH--HcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC---
Confidence            9999999999877767778  899999999976555678999999998853       6789999999999999876   


Q ss_pred             HHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHH
Q 038416          170 LQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDS  249 (387)
Q Consensus       170 ~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~  249 (387)
                      +++|+++|+++|+++|+|++|+....    ..+.....   ..++++|++|+++ ++.|+||+++++        ++++.
T Consensus       165 l~~i~~la~~~~~~livDea~~~g~~----~~~~~~~~---~di~v~s~sK~~~-~~g~~G~l~~~~--------~~i~~  228 (370)
T TIGR02539       165 AGKVAKVCREKGVPLLLNCAYTVGRM----PVSAKEIG---ADFIVGSGHKSMA-ASGPCGVLGMSE--------EWEDI  228 (370)
T ss_pred             HHHHHHHHHHcCCeEEEECccccCCc----CCCHHHcC---CCEEEeeCccccc-CCCCEEEEEECH--------HHHhh
Confidence            77888899999999999999996321    11111222   2377799999987 466799999876        67777


Q ss_pred             HHhhhh-cc--------CCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCCCceEEEEEe
Q 038416          250 IKGCLN-AA--------SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCP-VKPQGAMFVMVK  319 (387)
Q Consensus       250 ~~~~~~-~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~g~~~~~~  319 (387)
                      ++.... +.        .+.....+.++..++.. ..+++.+..+.+.. ++++++.|+++ ++..+ ..|..++|++++
T Consensus       229 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~l~~~~~~~~~-~~~l~~~L~~~-g~~~~~~~~s~t~~v~~~  305 (370)
T TIGR02539       229 VLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPH-VVERVKRWDEEVKK-TRWFVAELEDI-GFIQLGQKPKEHDLVKFE  305 (370)
T ss_pred             hcccccCCccceeeeecccccccHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHhC-CcEEEccCCCcCceEEEE
Confidence            765432 10        11111133344444432 12344444344443 45788999888 66632 246678888887


Q ss_pred             cCccc---ccCCCcHHHHHHHHHHhcCeE-EEcCCccCCCCeEEEEe-eCChHhHHHHHHHHHHHHHHh
Q 038416          320 LNVSM---LEDIGDDLEFCLKLAKEESVI-ILPGRTVGMKNWLRIAF-AAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       320 ~~~~~---~~~~~~~~~~~~~ll~~~gi~-v~~g~~~~~~~~~Ri~~-~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      ++...   .........+.+.| .++||. +.+|    .++++|+++ +.++++++++++.|+++++++
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~L-~e~GI~~ir~~----~~~~iRis~~~~t~e~i~~l~~~L~~~~~~~  369 (370)
T TIGR02539       306 TPGFHEIAQKHKRRGYFLYEEL-KKRGIHGIRSG----QTKYFKLSVYGLTKEQVEYVVDSFEEIVEEY  369 (370)
T ss_pred             CCchhHHhhhhccccHHHHHHH-HhCCCccccCC----cceEEEEEecCCCHHHHHHHHHHHHHHHHhc
Confidence            75210   00001223455554 667997 5553    356999997 568999999999999888764

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PRK10534 L-threonine aldolase; Provisional

Probab=99.97  E-value=4.8e-29  Score=227.82  Aligned_cols=310  Identities=15%  Similarity=0.134  Sum_probs=214.0

Q ss_pred             CCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCe
Q 038416           20 GVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGAN   99 (387)
Q Consensus        20 ~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~   99 (387)
                      ++...+++|.+.+++.+....  ...|++.....+|++.++++++      .  +.+++++|+++++..++.+++++||+
T Consensus         6 ~~~~~~p~~~~~~a~~~~~~~--~~~Y~~~~~~~~L~~~la~~~g------~--~~~~v~~~g~~a~~~~l~~~~~~gd~   75 (333)
T PRK10534          6 SDTVTRPSRAMLEAMMAAPVG--DDVYGDDPTVNALQDYAAELSG------K--EAALFLPTGTQANLVALLSHCERGEE   75 (333)
T ss_pred             cccCCCCCHHHHHHHHhccCC--CcccCCCHHHHHHHHHHHHHhC------C--CeEEEeCchHHHHHHHHHHhcCCCCe
Confidence            444556889999999875543  3468655688999999999983      2  45567777888888888888999999


Q ss_pred             EEEcCCCCcc-hHHH-hhccCCC-ceeeeeccCCCCCccCChhhHHHhhcc------CceEEEEeCCCCCccccCCHHHH
Q 038416          100 ILIPRPGYPL-YEIH-AAGSNNN-LEARHYDLLPEKRWEVDLDGVEALADE------NTVAIVIINPGNPCGNVFSYQHL  170 (387)
Q Consensus       100 vl~~~p~~~~-~~~~-~~~~~~g-~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~~  170 (387)
                      |+++.|+|.. +... ..  ..+ .++..+++.  .++.+|+++|++++++      ++++|++++|+  +|.+++.+++
T Consensus        76 vi~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~~~~~l  149 (333)
T PRK10534         76 YIVGQAAHNYLYEAGGAA--VLGSIQPQPIDAA--ADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NGKVLPREYL  149 (333)
T ss_pred             eEEechhhhhHhcCCchH--HhcCceEEeecCC--CCCCCCHHHHHHhhcccCcCcccceEEEEecCC--CCeecCHHHH
Confidence            9998888853 3211 22  333 566666653  4578899999999876      58899999766  5999999999


Q ss_pred             HHHHHHHHhcCcEEeeccccccccc--CCCCCccccccCCCccEEEEecCcccccccccceE-EEEeeCCCCcccchhHH
Q 038416          171 QKIARTARNLGIIVIADEVYNHLAF--GSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLG-WLVTSDPNGILQNSGFV  247 (387)
Q Consensus       171 ~~l~~~~~~~~~~li~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G-~i~~~~~~~~~~~~~~~  247 (387)
                      ++|+++|+++++++|+||+|.....  .+..   ...+....+.+ +.||||.|+++   +| |+++++        +++
T Consensus       150 ~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~---~~~~~~~~~~~-~~s~SK~~~~~---~G~~~~~~~--------~~i  214 (333)
T PRK10534        150 KQAWEFTRERNLALHVDGARIFNAVVAYGCE---LKEITQYCDSF-TICLSKGLGTP---VGSLLVGNR--------DYI  214 (333)
T ss_pred             HHHHHHHHHcCCeEEeeHHHHHHHHHHcCCC---HHHHHhcCCEE-EEEeEcCCCCc---ccceEEcCH--------HHH
Confidence            9999999999999999999873211  0111   11111111222 34899998764   67 576654        788


Q ss_pred             HHHHhhhhccC-C--cchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccc
Q 038416          248 DSIKGCLNAAS-H--PVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSM  324 (387)
Q Consensus       248 ~~~~~~~~~~~-~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~  324 (387)
                      +.+++...... +  .+.+.+.++...+++     ..+..++..++++++.+.|+++ |+. +..| .++|+|++++.  
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~-----~~~~~~~~~~~r~~l~~~L~~~-g~~-~~~~-~~nfv~~~~~~--  284 (333)
T PRK10534        215 KRARRWRKMTGGGMRQAGILAAAGLYALKH-----NVARLQEDHDNAAWLAEQLREA-GAD-VMRQ-DTNMLFVRVGE--  284 (333)
T ss_pred             HHHHHHHHHhCCchhhHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHhC-CCc-cCCC-CceEEEEECCc--
Confidence            88877654221 1  223445554444432     1233344555678888999988 777 4244 68999998862  


Q ss_pred             ccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHH
Q 038416          325 LEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       325 ~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~  381 (387)
                          .+..++ .++++++||.+.|+.      ++|++.+  .+++++++++++|++.+.
T Consensus       285 ----~~~~~~-~~~l~~~gi~v~~~~------~~rl~~~~r~t~e~~~~~~~~l~~~~~  332 (333)
T PRK10534        285 ----EQAAAL-GEYMRERNVLINASP------IVRLVTHLDVSREQLAEVVAHWRAFLA  332 (333)
T ss_pred             ----hhHHHH-HHHHHHcCeeecCCc------eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence                123445 456678899998873      5788774  689999999999987664

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.97  E-value=2.5e-28  Score=228.78  Aligned_cols=334  Identities=14%  Similarity=0.050  Sum_probs=230.5

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCC--CCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHY--NCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI   86 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~   86 (387)
                      .+++.+.|+   +++++.++.+.+++++++.....  ..+....|..++++.+++++.+.++.   +++|++|+| ++++
T Consensus        43 ~~i~l~~~~---~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~---~~~i~~tsG-~~a~  115 (397)
T PRK06939         43 EVINFCANN---YLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGT---EDAILYSSC-FDAN  115 (397)
T ss_pred             eEEEeeccC---ccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCC---CcEEEEcCh-HHHH
Confidence            345665554   24888999999999999875321  12222457788888888888887662   367777777 7789


Q ss_pred             HHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc------CceEEEEeCCCCC
Q 038416           87 EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE------NTVAIVIINPGNP  160 (387)
Q Consensus        87 ~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~np  160 (387)
                      ..++.+++++||.|++++|+|+++...+.  ..+.++..++.       .|++++++.+++      ++++|+..+.+|+
T Consensus       116 ~~~~~~l~~~gd~vi~~~~~~~~~~~~~~--~~~~~~~~~~~-------~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~  186 (397)
T PRK06939        116 GGLFETLLGKEDAIISDALNHASIIDGVR--LCKAKRYRYAN-------NDMADLEAQLKEAKEAGARHKLIATDGVFSM  186 (397)
T ss_pred             HHHHHHhCCCCCEEEEEhhhhHHHHHHHH--hcCCceEEeCC-------CCHHHHHHHHHhhhccCCCCeEEEEecCcCC
Confidence            99999999999999999999999888888  88888776653       367888877653      5666766667899


Q ss_pred             ccccCCHHHHHHHHHHHHhcCcEEeecccccccccC--CCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCC
Q 038416          161 CGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFG--STPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPN  238 (387)
Q Consensus       161 tG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~  238 (387)
                      +|..   +++++|.++|+++|+++|+|++|+...+.  +........+. .+..++++|+||++  +|.|+||+++++  
T Consensus       187 ~G~~---~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~-~~~~i~~~S~sK~~--~g~r~G~v~~~~--  258 (397)
T PRK06939        187 DGDI---APLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVM-DRVDIITGTLGKAL--GGASGGYTAGRK--  258 (397)
T ss_pred             CCCc---CCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCC-CCCcEEEEECHHHh--CccCceEEEeCH--
Confidence            9986   44899999999999999999999632221  11111111221 13458999999997  356899999875  


Q ss_pred             CcccchhHHHHHHhhhh---ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEE
Q 038416          239 GILQNSGFVDSIKGCLN---AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMF  315 (387)
Q Consensus       239 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~  315 (387)
                            ++++.+.....   ...++++..+.++.++++...  ...+..+++.++++.+.+.|+++ ++... .+.++ +
T Consensus       259 ------~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~-~  327 (397)
T PRK06939        259 ------EVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLE--ESDELRDRLWENARYFREGMTAA-GFTLG-PGEHP-I  327 (397)
T ss_pred             ------HHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc-CCCcC-CCCCC-E
Confidence                  67777765422   122333444454544454321  12466778888999999999887 66633 44444 4


Q ss_pred             EEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccC---CCCeEEEEee--CChHhHHHHHHHHHHHHHHh
Q 038416          316 VMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG---MKNWLRIAFA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~---~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                      +++.++..     .+..+++..++++ ||.+.++.+..   ...++|++++  .+++++++++++|++++++.
T Consensus       328 ~~~~~~~~-----~~~~~~~~~L~~~-gI~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~~  394 (397)
T PRK06939        328 IPVMLGDA-----KLAQEFADRLLEE-GVYVIGFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKEL  394 (397)
T ss_pred             EEEEECCH-----HHHHHHHHHHHHC-CceEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence            33334321     1356777777665 99988643221   1368999983  58999999999999988764

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.97  E-value=1.7e-28  Score=229.72  Aligned_cols=335  Identities=13%  Similarity=0.139  Sum_probs=227.9

Q ss_pred             cccCCCCCCCCCCCCCCC-cHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSD-STVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~-~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      .+++..-|.+..  .++. +|.+.+++++++.....  . ......++++.+++++.+..    ..+++++++|+++|+.
T Consensus        40 ~~iD~~~g~~~~--~lG~~~p~v~~a~~~~~~~~~~--~-~~~~~~~~~~~la~~l~~~~----~~~~v~~~~gg~eA~~  110 (396)
T PRK02627         40 EYLDFLAGIAVN--NLGHCHPKLVEAIQEQAAKLIH--T-SNLYYIEPQEELAEKLVELS----GMDKVFFCNSGAEANE  110 (396)
T ss_pred             EEEECCccHHhc--cCCCCCHHHHHHHHHHHhhccc--c-ccccCCHHHHHHHHHHHhhc----CCCEEEECCCcHHHHH
Confidence            455655554422  2343 68999999998875311  1 11123577888888887653    3479999999999999


Q ss_pred             HHHHhhcCCC-------CeEEEcCCCCcchHHHhhccCCCcee-e---eeccCCCCCc----cCChhhHHHhhccCceEE
Q 038416           88 ISLSVLARPG-------ANILIPRPGYPLYEIHAAGSNNNLEA-R---HYDLLPEKRW----EVDLDGVEALADENTVAI  152 (387)
Q Consensus        88 ~~~~~l~~~g-------~~vl~~~p~~~~~~~~~~~~~~g~~~-~---~~~~~~~~~~----~~~~~~l~~~~~~~~~~v  152 (387)
                      .+++.+...+       ++|++..++|+++.....  ..+... .   ..++.  .++    ..|++++++++.+++++|
T Consensus       111 ~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~l~~~i~~~~~~v  186 (396)
T PRK02627        111 AAIKLARKYGHKKGIEKPEIITAENSFHGRTLATL--SATGQPKYQEGFEPLV--EGFIYVPFNDIEALKAAITDKTAAV  186 (396)
T ss_pred             HHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHH--HhcCCccccccCCCCC--CCceEeCCCCHHHHHHhcCCCeEEE
Confidence            9999775322       679999999988765544  332211 1   11111  111    128899999998788999


Q ss_pred             EEeCCCCCcc-ccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEE
Q 038416          153 VIINPGNPCG-NVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGW  231 (387)
Q Consensus       153 ~l~~p~nptG-~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~  231 (387)
                      ++..++||+| ..++++.+++|.++|+++|+++|+||+|+++.+.+... .+..+....+   +.++||.++ +|+|+||
T Consensus       187 ii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~-~~~~~~~~pd---i~t~sK~~~-~G~rig~  261 (396)
T PRK02627        187 MLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLF-AYQHYGIEPD---IMTLAKGLG-GGVPIGA  261 (396)
T ss_pred             EEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCcee-eehhcCCCCC---EEEEcchhh-CCcccEE
Confidence            9988899999 68899999999999999999999999999887665322 2212222222   347999987 8999999


Q ss_pred             EEeeCCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 038416          232 LVTSDPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNE-AFFAKIIGLLKETADICYERIKEIPCITCPVK  309 (387)
Q Consensus       232 i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  309 (387)
                      +++++        ++++.+.... ..+++.+++.+.++.++|+...+ ...++..+.....++.+.+.+.++|.+. . .
T Consensus       262 ~~~~~--------~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~-~  331 (396)
T PRK02627        262 VLAKE--------KVADVFTPGDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYLRAKLRELLEKYPGIK-E-V  331 (396)
T ss_pred             EEEcH--------HHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCee-e-e
Confidence            99976        6777665432 24567888999998888875332 2223333333333344444433343333 1 2


Q ss_pred             CCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHHHHh
Q 038416          310 PQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       310 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      +..|.++|+.++.       +..++...+++ +||.+.|+.    .+++|+++  ..+++++++++++|+++++++
T Consensus       332 ~~~g~~~~i~~~~-------~~~~~~~~l~~-~Gv~v~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~l~~~  395 (396)
T PRK02627        332 RGLGLMIGIELDR-------PAAEIVKKALE-KGLLINVTG----DNVLRLLPPLIISKEEIDEAVDRLEEVLKEL  395 (396)
T ss_pred             ccCcEEEEEEecC-------cHHHHHHHHHH-CCeEEeecC----CCEEEEECCcccCHHHHHHHHHHHHHHHHhh
Confidence            3457788888742       45677777755 499999864    47899987  468999999999999998764

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.97  E-value=1.8e-28  Score=229.94  Aligned_cols=323  Identities=15%  Similarity=0.107  Sum_probs=220.4

Q ss_pred             CCCCCCCcHHHHHHHHHHhcCCCC------CCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh
Q 038416           20 GVSLLSDSTVAEDAVVDALRTAHY------NCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL   93 (387)
Q Consensus        20 ~~~~~~~~~~v~~a~~~~~~~~~~------~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l   93 (387)
                      .|.+++.+|.+.+++.+++..-..      ..|+......+|++.+++++      + .++.+++++ |++++..++..+
T Consensus        55 ~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~------g-~~~~i~~~s-G~~a~~~~i~~l  126 (410)
T PRK13392         55 DYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLH------G-KESALLFTS-GYVSNDAALSTL  126 (410)
T ss_pred             CccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHh------C-CCCEEEECc-HHHHHHHHHHHH
Confidence            455788999999999998865211      12322224678889999888      2 234555555 567888888776


Q ss_pred             cC--CCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhh----ccCceEEEEeCCCCCccccCCH
Q 038416           94 AR--PGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALA----DENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        94 ~~--~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      ..  +|+.|+++...|.++...+.  ..|.++..++.   +    |.+.+++.+    .+++++|++++|+||||.+++ 
T Consensus       127 ~~~~~g~~vi~~~~~h~s~~~~~~--~~g~~~~~~~~---~----d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~-  196 (410)
T PRK13392        127 GKLLPGCVILSDALNHASMIEGIR--RSGAEKQVFRH---N----DLADLEEQLASVDPDRPKLIAFESVYSMDGDIAP-  196 (410)
T ss_pred             hcCCCCCEEEEehhhhHHHHHHHH--HcCCeEEEEeC---C----CHHHHHHHHHhccCCCCEEEEEeCCCCCCccccc-
Confidence            53  78888887778888777777  78888766542   1    334444433    347889999999999999988 


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                        +++|.++|+++|+++|+||+|+...++..+......... +...++++|+||+|+++|   ||+++++        ++
T Consensus       197 --l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~G---G~~~~~~--------~~  263 (410)
T PRK13392        197 --IEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCLG---GYIAASA--------DL  263 (410)
T ss_pred             --HHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhccc---chhhcCH--------HH
Confidence              888888999999999999999943332221111111111 112378899999998887   8998764        67


Q ss_pred             HHHHHhhhh---ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcc
Q 038416          247 VDSIKGCLN---AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVS  323 (387)
Q Consensus       247 ~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~  323 (387)
                      ++.+++...   .+.+.+++.+.++.++|+...  ......++++++++++++.|+++ ++.+. .+. +.++.+.++..
T Consensus       264 ~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~-~~~~~i~~~~~  338 (410)
T PRK13392        264 IDFVRSFAPGFIFTTALPPAVAAGATAAIRHLK--TSQTERDAHQDRVAALKAKLNAN-GIPVM-PSP-SHIVPVMVGDP  338 (410)
T ss_pred             HHHHHHhCcchhccCcCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc-CCCCC-CCC-CCEEEEEeCCH
Confidence            777765542   233455567777777776532  22345577888899999999887 67733 343 44444444321


Q ss_pred             cccCCCcHHHHHHHHHHhcCeEEEcCCccCC---CCeEEEEee--CChHhHHHHHHHHHHHHHHh
Q 038416          324 MLEDIGDDLEFCLKLAKEESVIILPGRTVGM---KNWLRIAFA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       324 ~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                           ....++...|++++||.+.++.....   ..++||++.  .++++++++++.|.++++++
T Consensus       339 -----~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~~~~~  398 (410)
T PRK13392        339 -----TLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAIWDRL  398 (410)
T ss_pred             -----HHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence                 12346777777778999998644322   368999994  68999999999999887653

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.97  E-value=2.9e-28  Score=227.14  Aligned_cols=335  Identities=12%  Similarity=0.108  Sum_probs=220.2

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      .+.|+.-|.-..+.++ .+|.+.+++++++....  ..+.. ...+....+++.+.+..    ..+++++++|+++|++.
T Consensus        32 ~~lD~~~g~~~~~lGh-~~p~v~~a~~~~~~~~~--~~~~~-~~~~~~~~la~~l~~~~----~~~~v~~~~sGseA~~~  103 (389)
T PRK01278         32 RYLDFASGIAVNSLGH-AHPHLVEALKEQAEKLW--HVSNL-YRIPEQERLAERLVENS----FADKVFFTNSGAEAVEC  103 (389)
T ss_pred             EEEECCccHhhccCCC-CCHHHHHHHHHHHHhcC--ccccc-cCChHHHHHHHHHHhhC----CCCEEEEcCCcHHHHHH
Confidence            4555544433334455 68899999999987521  11111 11233344455444322    34689999999999999


Q ss_pred             HHHhh----cCCCC----eEEEcCCCCcchHHHhhccCCCceeeeecc--CCCCCcc----CChhhHHHhhccCceEEEE
Q 038416           89 SLSVL----ARPGA----NILIPRPGYPLYEIHAAGSNNNLEARHYDL--LPEKRWE----VDLDGVEALADENTVAIVI  154 (387)
Q Consensus        89 ~~~~l----~~~g~----~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~----~~~~~l~~~~~~~~~~v~l  154 (387)
                      +++++    ..+||    +|++.+++|+++.....  ..+........  ....++.    .|++++++++++++++|++
T Consensus       104 al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~aviv  181 (389)
T PRK01278        104 AIKTARRYHYGKGHPERYRIITFEGAFHGRTLATI--AAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITPNTAAILI  181 (389)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHH--hccCChhhcccCCCCCCCceEeCCCCHHHHHHhhCCCeEEEEE
Confidence            99886    34555    89999999998765555  43332222110  0011111    4789999999878888888


Q ss_pred             eCCCCCcc-ccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCCccEEEEecCcccccccccceEEE
Q 038416          155 INPGNPCG-NVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVITLGSISKRWIVPGWRLGWL  232 (387)
Q Consensus       155 ~~p~nptG-~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i  232 (387)
                      ..++|++| ..+|.+++++|.++|++||+++|+||+|.++.+.+..... ...+.++     +.++||.++ +|+|+||+
T Consensus       182 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pd-----i~t~sK~l~-~G~~ig~~  255 (389)
T PRK01278        182 EPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPD-----IMAVAKGIG-GGFPLGAC  255 (389)
T ss_pred             ecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCC-----EEEEehhcc-CCcceEEE
Confidence            87788898 7889999999999999999999999999988766542221 1122222     458999976 88999999


Q ss_pred             EeeCCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhh----cCCCCCCC
Q 038416          233 VTSDPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIK----EIPCITCP  307 (387)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~  307 (387)
                      ++++        ++.+.+.... ..+++.+++.++++.+.|+...+..+   .+.++++.+.+.+.|+    .++++...
T Consensus       256 ~~~~--------~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~---~~~~~~~~~~l~~~l~~l~~~~~~~~~~  324 (389)
T PRK01278        256 LATE--------EAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGF---LDNVQRMGLYLKQKLEGLVDRFPDVIEE  324 (389)
T ss_pred             EEcH--------HHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHHHHHHHhhCCCceee
Confidence            9976        5666665443 24567888899988777764322211   2222333333333332    23322111


Q ss_pred             CCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHHHHh
Q 038416          308 VKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       308 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~  383 (387)
                       ....|.++++.+..       +..++...++++ ||.+.|+.    .+++|+++  ..+++++++++++|.++++++
T Consensus       325 -v~g~G~~~~i~~~~-------~~~~~~~~l~~~-GV~~~p~~----~~~lR~~p~~~~~~~~i~~~l~~l~~~l~~~  389 (389)
T PRK01278        325 -VRGKGLLLGLKCVV-------PNRDLVQALRDE-GLLTVGAG----DNVVRLLPPLIITEEEIDEALERLERAAESL  389 (389)
T ss_pred             -EecccEEEEEEEec-------CHHHHHHHHHHC-CeEEeecC----CCEEEEeCCcccCHHHHHHHHHHHHHHHHhC
Confidence             23356777777642       456777777655 99999874    57899997  368999999999999988653

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.97  E-value=4.4e-28  Score=226.29  Aligned_cols=332  Identities=16%  Similarity=0.085  Sum_probs=222.4

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCC--CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAH--YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQA   85 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a   85 (387)
                      +.+++.+.+.   .++++++|.+.+++++++..-.  ...|....+...+++.+++.+.+.++   . ++.+++++++++
T Consensus        39 ~~~id~~~~~---~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~---~-~~~i~~~~g~~~  111 (385)
T PRK05958         39 RRMLNFASND---YLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFG---A-ERALLFSSGYAA  111 (385)
T ss_pred             ceEEEeeCCC---cccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC---C-CcEEEECcHHHH
Confidence            4556665543   2356678999999999887521  11122222333444444444444333   2 344555556677


Q ss_pred             HHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccC---ceEEEEeCCCCCcc
Q 038416           86 IEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADEN---TVAIVIINPGNPCG  162 (387)
Q Consensus        86 ~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~v~l~~p~nptG  162 (387)
                      +..++..++++||.|+++.|.|+.+...+.  ..|.++..++.       .|++.+++.+++.   +.++++.+++|++|
T Consensus       112 ~~~~l~~~~~~gd~V~~~~~~~~~~~~~~~--~~g~~~~~~~~-------~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G  182 (385)
T PRK05958        112 NLAVLTALAGKGDLIVSDKLNHASLIDGAR--LSRARVRRYPH-------NDVDALEALLAKWRAGRALIVTESVFSMDG  182 (385)
T ss_pred             HHHHHHHhCCCCCEEEEeCccCHHHHHHHH--hcCCceEEeCC-------CCHHHHHHHHHhccCCCeEEEEEecccCCC
Confidence            777778889999999999999999888888  88888887764       2778888888652   45556566789999


Q ss_pred             ccCCHHHHHHHHHHHHhcCcEEeecccccccccC--CCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCc
Q 038416          163 NVFSYQHLQKIARTARNLGIIVIADEVYNHLAFG--STPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGI  240 (387)
Q Consensus       163 ~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~  240 (387)
                      ...+   +++|.++|+++|+++|+|++|+.+.+.  +........+....+++++.|+||+++.+|   ||+++++    
T Consensus       183 ~~~~---l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G---g~~~~~~----  252 (385)
T PRK05958        183 DLAP---LAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSG---AAVLGSE----  252 (385)
T ss_pred             CcCC---HHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcccCC---cEEEcCH----
Confidence            8855   889999999999999999999764443  222211112333456799999999998766   8888764    


Q ss_pred             ccchhHHHHHHhhh-h--ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEE
Q 038416          241 LQNSGFVDSIKGCL-N--AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVM  317 (387)
Q Consensus       241 ~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~  317 (387)
                          ++.+.+.+.. .  .+.++++....++.++++.....  ....+++.++++.+.+.|+++ ++. +..+ .+.+++
T Consensus       253 ----~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~--~~~~~~~~~~~~~l~~~L~~~-~~~-~~~~-~~~~~~  323 (385)
T PRK05958        253 ----TLIDYLINRARPFIFTTALPPAQAAAARAALRILRRE--PERRERLAALIARLRAGLRAL-GFQ-LMDS-QSAIQP  323 (385)
T ss_pred             ----HHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc-CCC-cCCC-CCCEEE
Confidence                5666664332 1  22334555555565666542211  456678888888999999887 566 3244 455677


Q ss_pred             EecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccC---CCCeEEEEee--CChHhHHHHHHHHHHHH
Q 038416          318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG---MKNWLRIAFA--AEPATLEDGLERIKAFC  380 (387)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~---~~~~~Ri~~~--~~~e~~~~~~~~l~~~~  380 (387)
                      +.++..     .+..++...+ .++||.+.++..+.   ..+++||+++  .+++++++++++|++++
T Consensus       324 ~~~~~~-----~~~~~~~~~l-~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~~  385 (385)
T PRK05958        324 LIVGDN-----ERALALAAAL-QEQGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEAL  385 (385)
T ss_pred             EEeCCH-----HHHHHHHHHH-HHCCceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhcC
Confidence            776531     1345677766 56699998754432   2468999996  58999999999997753

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.97  E-value=5e-28  Score=225.72  Aligned_cols=332  Identities=14%  Similarity=0.117  Sum_probs=232.9

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCC--CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTA--HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI   86 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~   86 (387)
                      .+++++.++   +++++.++.+.+++.+++...  ....|....|..++++.+++++.+.++   .++.+++++| ++++
T Consensus        34 ~~id~~~~~---~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g---~~~~i~~~sG-~~a~  106 (385)
T TIGR01825        34 EVINLSSNN---YLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKK---TEAALVFQSG-FNTN  106 (385)
T ss_pred             eEEEeeccC---ccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhC---CCcEEEECcH-HHHH
Confidence            344555543   248889999999999988742  233566677889999999999988766   2356777766 6677


Q ss_pred             HHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc----CceEEEEeCCCCCcc
Q 038416           87 EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE----NTVAIVIINPGNPCG  162 (387)
Q Consensus        87 ~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~v~l~~p~nptG  162 (387)
                      ..++.+++++||.|+++.|.|.++...+.  ..|.++..++       .+|++++++.+.+    +++++++.+++||||
T Consensus       107 ~~a~~~~~~~gd~vi~~~~~~~~~~~~~~--~~g~~~~~~~-------~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG  177 (385)
T TIGR01825       107 QGVLSALLRKGDIVLSDELNHASIIDGLR--LTKATKKIYK-------HADMDDLDRVLRENPSYGKKLIVTDGVFSMDG  177 (385)
T ss_pred             HHHHHHhCCCCCEEEEEccccHHHHHHHH--hcCCceEEeC-------CCCHHHHHHHHHhhccCCCeEEEEecCCcCCC
Confidence            78888889999999999999998877777  7777766543       3577778776643    577888888899999


Q ss_pred             ccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCc--cccccCCCccEEEEecCcccccccccceEEEEeeCCCCc
Q 038416          163 NVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYV--PMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGI  240 (387)
Q Consensus       163 ~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~  240 (387)
                      ...+   +++|.++|++||+++|+|++|+.+.++.....  ...... .+.++++.|+||+++++|   ||+++++    
T Consensus       178 ~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g---G~~~~~~----  246 (385)
T TIGR01825       178 DVAP---LPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLE-DKVDIQVGTLSKAIGVVG---GYAAGHK----  246 (385)
T ss_pred             CccC---HHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCC-cCCcEEEEeccHHhhcCC---CEEecCH----
Confidence            9877   78899999999999999999987654321111  111122 346789999999987665   9998765    


Q ss_pred             ccchhHHHHHHhhhh---ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEE
Q 038416          241 LQNSGFVDSIKGCLN---AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVM  317 (387)
Q Consensus       241 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~  317 (387)
                          ++++.+.....   .+...++..+.++.++++...+  ..+..+++.++++.+.+.|+++ ++.+. .+... ++.
T Consensus       247 ----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~-~~~  317 (385)
T TIGR01825       247 ----ELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQR--SPELMERLWDNTRFFKAGLGKL-GYDTG-GSETP-ITP  317 (385)
T ss_pred             ----HHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc-CCCCC-CCCCC-EEE
Confidence                67777765421   1223455667777776654221  1235566677888999999887 67733 44433 444


Q ss_pred             EecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC----CCeEEEEe--eCChHhHHHHHHHHHHHHHHh
Q 038416          318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM----KNWLRIAF--AAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~----~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      +.++..     .+..+++..++++ ||.+.+ ..|..    ..++|+++  ..+++++++++++|+++++++
T Consensus       318 ~~~~~~-----~~~~~~~~~L~~~-gi~v~~-~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~~  382 (385)
T TIGR01825       318 VVIGDE-----KAAQEFSRRLFDE-GIFAQS-IVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVGKEL  382 (385)
T ss_pred             EEECCH-----HHHHHHHHHHHHC-CcEEcc-cCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHHHHh
Confidence            444321     1345677777665 998854 33322    36899988  468999999999999988654

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=7.9e-28  Score=220.95  Aligned_cols=320  Identities=18%  Similarity=0.199  Sum_probs=246.2

Q ss_pred             CCcHHHHHHHHHHhcCCCC----CCCCC----CCCcHHHHHHHHHHHhhcCCCCCC-CCCEEEcCChHHHHHHHHHhh--
Q 038416           25 SDSTVAEDAVVDALRTAHY----NCYSP----TLGVPSARRGIADYLNRDLPYKLS-PEDVYLTLGCSQAIEISLSVL--   93 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~----~~y~~----~~~~~~lr~~ia~~~~~~~~~~~~-~~~i~~~~g~~~a~~~~~~~l--   93 (387)
                      ..|..+.+++.+...+...    ..+..    ...+++.|+.++++++      .+ .++|++|.|+|++++.+..++  
T Consensus        33 ~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~------a~~~~eIvft~~tT~aln~va~~l~~  106 (405)
T COG0520          33 QKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLN------ADSSDEIVFTRGTTEALNLVARGLGR  106 (405)
T ss_pred             cCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhC------CCCCCeEEEeCChhHHHHHHHHHhhh
Confidence            3789999999998764211    12222    1246788899999984      46 589999999999999999999  


Q ss_pred             -cCCCCeEEEcCCCCcc----hHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           94 -ARPGANILIPRPGYPL----YEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        94 -~~~g~~vl~~~p~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                       .++||+|++..-.|++    |....+  ..|++++.+|++  +++.++.+.++..++++|++|.+++.+|.||+..|  
T Consensus       107 ~~~~gdeIv~s~~EH~sn~~pw~~~~~--~~Ga~v~~i~~~--~~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~p--  180 (405)
T COG0520         107 SLKPGDEIVVSDLEHHSNIVPWQELAK--RTGAKVRVIPLD--DDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNP--  180 (405)
T ss_pred             hhcCCCEEEEccCcchhhHHHHHHHHH--hcCcEEEEEecC--CCCCcCHHHHHHhcCCCceEEEEECccccccccch--
Confidence             6899999999999874    667777  789999999986  44578999999999999999999999999999977  


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccc-cccccceEEEEeeCCCCcccchhHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRW-IVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~-~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                       +++|+++|+++|+++++|.+++.    ++.+..+..++.+   +++.|.+|++ |+.|  +|++++++        ++.
T Consensus       181 -v~~I~~la~~~ga~v~VDaaq~~----~h~~idv~~l~~D---f~afsgHKwl~gP~G--iGvLy~r~--------~~l  242 (405)
T COG0520         181 -VKEIAELAHEHGALVLVDAAQAA----GHLPIDVQELGCD---FLAFSGHKWLLGPTG--IGVLYVRK--------ELL  242 (405)
T ss_pred             -HHHHHHHHHHcCCEEEEECcccc----CccCCCchhcCCC---EEEEcccccccCCCc--eEEEEEch--------HHH
Confidence             99999999999999999999985    4455556666666   9999999954 4446  89999976        555


Q ss_pred             HHHHhh-----------------------hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 038416          248 DSIKGC-----------------------LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCI  304 (387)
Q Consensus       248 ~~~~~~-----------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  304 (387)
                      +.+...                       +.-.++++.....++.++++...+..+..+.++.+.+.+++.+.|+++|++
T Consensus       243 ~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v  322 (405)
T COG0520         243 EELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGV  322 (405)
T ss_pred             hhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence            554210                       011235566666677777776666778889999999999999999999998


Q ss_pred             CCCCCCC--ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC--------CCeEEEEee--CChHhHHHH
Q 038416          305 TCPVKPQ--GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--------KNWLRIAFA--AEPATLEDG  372 (387)
Q Consensus       305 ~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--------~~~~Ri~~~--~~~e~~~~~  372 (387)
                      .+...+.  .+..+.+.++.      ....++...| .++||.++.|..|..        ...+|+|++  +++||++++
T Consensus       323 ~i~g~~~~~r~~~vsF~v~~------~~~~dv~~~L-~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~edid~l  395 (405)
T COG0520         323 EIYGPPDADRGGIVSFNVKG------IHPHDVATLL-DEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRL  395 (405)
T ss_pred             EEecCCcccCceEEEEEeCC------CCHHHHHHHH-HhCCeEEEeccccccHHHHhcCCCCceEEEEeecCCHHHHHHH
Confidence            8664442  34444555543      1455666655 566899999977653        345999995  589999999


Q ss_pred             HHHHHHHHH
Q 038416          373 LERIKAFCQ  381 (387)
Q Consensus       373 ~~~l~~~~~  381 (387)
                      ++.|+++.+
T Consensus       396 ~~aL~~~~~  404 (405)
T COG0520         396 LEALKKALA  404 (405)
T ss_pred             HHHHHHHhh
Confidence            999988764

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.97  E-value=5.1e-28  Score=226.83  Aligned_cols=340  Identities=16%  Similarity=0.071  Sum_probs=231.0

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCC------CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCCh
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTA------HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGC   82 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~------~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~   82 (387)
                      ..++.++|..      ++++.+++++.+.+...      ....|....+...+++.+++++.+.++.  +...|+++ |+
T Consensus        20 ~~~~~~~~~~------~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~--~~~~v~~~-sg   90 (402)
T cd00378          20 ETLELIASEN------FTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGA--EYANVQPH-SG   90 (402)
T ss_pred             hCeeeeccCC------cCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCC--CceeeecC-Cc
Confidence            3555666544      56899999998765321      1123434445566777666666555553  33445555 56


Q ss_pred             HHHHHHHHHhhcCCCCeEEEcCCCCcchHHH-----hhccCCCceeeeeccCCCC-CccCChhhHHHhhc-cCceEEEEe
Q 038416           83 SQAIEISLSVLARPGANILIPRPGYPLYEIH-----AAGSNNNLEARHYDLLPEK-RWEVDLDGVEALAD-ENTVAIVII  155 (387)
Q Consensus        83 ~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~-----~~~~~~g~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~~~~v~l~  155 (387)
                      ++|+..++.+++++||+|+++.|+|.++...     ++  ..|.++..+++..+. ++.+|++++++++. +++++++++
T Consensus        91 t~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v~~~  168 (402)
T cd00378          91 SQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVS--ASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAG  168 (402)
T ss_pred             HHHHHHHHHHhcCCCCEEEEecCccCcccccccccccc--ccceeEEEecCCcCcccCCcCHHHHHHHHHhCCCCEEEec
Confidence            7999999999999999999999999865433     45  577777777665432 57899999999885 578899888


Q ss_pred             CCCCCccccCCHHHHHHHHHHHHhcCcEEeecccc-cccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEe
Q 038416          156 NPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVY-NHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVT  234 (387)
Q Consensus       156 ~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~  234 (387)
                      +|++|+  ..   ++++|+++|+++|+++|+|++| .++.+.+....++.  ..   .++++|+||++  +|+|.||+++
T Consensus       169 ~~~~~~--~~---~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~--~~---dv~~~s~sK~l--~G~~gg~i~~  236 (402)
T cd00378         169 ASAYPR--PI---DFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP--GA---DVVTTTTHKTL--RGPRGGLILT  236 (402)
T ss_pred             CcccCC--Cc---CHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc--CC---cEEEeccccCC--CCCCceEEEe
Confidence            888764  33   3889999999999999999996 44444442222332  12   27899999985  7889999998


Q ss_pred             eCCCCcccchhHHHHHHhhhh--ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCc
Q 038416          235 SDPNGILQNSGFVDSIKGCLN--AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQG  312 (387)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  312 (387)
                      ++       +++++++.....  ...++......++..++....+....++.+++.++++.+.+.|+++ ++.+...|.+
T Consensus       237 ~~-------~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~  308 (402)
T cd00378         237 RK-------GELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKER-GFKVVSGGTD  308 (402)
T ss_pred             cc-------HHHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhC-CCeEeecCCC
Confidence            64       246777765432  1222223333343444443223356777888999999999999988 7774434677


Q ss_pred             eEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccC------CCCeEEEEee------CChHhHHHHHHHHHHHH
Q 038416          313 AMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG------MKNWLRIAFA------AEPATLEDGLERIKAFC  380 (387)
Q Consensus       313 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~------~~~~~Ri~~~------~~~e~~~~~~~~l~~~~  380 (387)
                      ++++|++++...    .+.. .+..+++++||.+.++....      ...++|+++.      .+.++++.+++.|++++
T Consensus       309 ~~~v~v~~~~~~----~~~~-~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~  383 (402)
T cd00378         309 NHLVLVDLRPKG----ITGK-AAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARAL  383 (402)
T ss_pred             CeEEEEeCCccC----CCHH-HHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            899999986421    1233 44455688899997643211      2468999993      25899999999999987


Q ss_pred             HHhh
Q 038416          381 QRHA  384 (387)
Q Consensus       381 ~~~~  384 (387)
                      ++-.
T Consensus       384 ~~~~  387 (402)
T cd00378         384 KDAE  387 (402)
T ss_pred             hccc
Confidence            6543

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PLN02483 serine palmitoyltransferase

Probab=99.97  E-value=4.6e-28  Score=229.74  Aligned_cols=321  Identities=13%  Similarity=0.076  Sum_probs=219.4

Q ss_pred             CCcHHHHHHHHHHhcC--CCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEE
Q 038416           25 SDSTVAEDAVVDALRT--AHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILI  102 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~--~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~  102 (387)
                      ..++.+.+++.+.-..  .....|+......++|+.+|++++       .++.+++++ +..++..++.+++++||.|++
T Consensus       119 ~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g-------~~~ai~~~~-G~~an~~~i~al~~~Gd~Vi~  190 (489)
T PLN02483        119 YCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVG-------KPAAIVFGM-GYATNSTIIPALIGKGGLIIS  190 (489)
T ss_pred             HHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhC-------CCcEEEECC-HHHHHHHHHHHhCCCCCEEEE
Confidence            3456677776665432  122346666678999999999994       345566655 556667888889999999999


Q ss_pred             cCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc-------cC-----ceEEEEeCC-CCCccccCCHHH
Q 038416          103 PRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD-------EN-----TVAIVIINP-GNPCGNVFSYQH  169 (387)
Q Consensus       103 ~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~-----~~~v~l~~p-~nptG~~~~~~~  169 (387)
                      ++|+|.++...++  ..|++++.++.+       |.+.+++.++       ++     +++++++++ .|++|...+   
T Consensus       191 d~~~h~s~~~~~~--~~Ga~v~~~~~~-------d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~---  258 (489)
T PLN02483        191 DSLNHNSIVNGAR--GSGATIRVFQHN-------TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCK---  258 (489)
T ss_pred             cchhhHHHHHHHH--HcCCeEEEEeCC-------CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccC---
Confidence            9999999999999  999999988753       3444444332       22     255666665 589999865   


Q ss_pred             HHHHHHHHHhcCcEEeecccccccccC--CCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          170 LQKIARTARNLGIIVIADEVYNHLAFG--STPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       170 ~~~l~~~~~~~~~~li~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      +++|+++|++||+++|+||+|+....+  |.+..+....+..+..++++|+||+|++.|   ||+++++        +++
T Consensus       259 l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~~G---G~i~~~~--------~li  327 (489)
T PLN02483        259 LPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSCG---GYIAGSK--------ELI  327 (489)
T ss_pred             HHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcccCc---eEEEcCH--------HHH
Confidence            899999999999999999999843322  222223333333456799999999998877   9999865        788


Q ss_pred             HHHHhhhh---ccCCcchHHHHHHHHHhhhc----cHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEec
Q 038416          248 DSIKGCLN---AASHPVTFIQAAVPRIVDET----NEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKL  320 (387)
Q Consensus       248 ~~~~~~~~---~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~  320 (387)
                      +.++....   .....++....++.+.++..    .+....++.++++++++++++.|+++ ++.+. .+.+++.+++.+
T Consensus       328 ~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~-G~~v~-~~~~sp~~~l~l  405 (489)
T PLN02483        328 QYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM-GFEVL-GDNDSPVMPIML  405 (489)
T ss_pred             HHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHC-CCccc-CCCCCCEEEEEE
Confidence            88876532   22233334333344444311    12334556788999999999999998 67633 444445555544


Q ss_pred             CcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC---CCeEEEEee--CChHhHHHHHHHHHHHHHHhh
Q 038416          321 NVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM---KNWLRIAFA--AEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       321 ~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      ...     .+..++...+++ +||.+.+......   .+.+|++++  .++|++++++++|+++++.+.
T Consensus       406 ~~~-----~~~~~~~~~Ll~-~GI~v~~~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~~~~~  468 (489)
T PLN02483        406 YNP-----AKIPAFSRECLK-QNVAVVVVGFPATPLLLARARICISASHSREDLIKALEVISEVGDLVG  468 (489)
T ss_pred             CCH-----HHHHHHHHHHHH-CCcEEeeeCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence            321     133467777765 5999987332221   368999995  589999999999999887654

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.97  E-value=1.1e-27  Score=220.95  Aligned_cols=323  Identities=12%  Similarity=0.115  Sum_probs=221.4

Q ss_pred             CCCCcHHHHHHHHHHhcCCCC----CC-CC--CCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC
Q 038416           23 LLSDSTVAEDAVVDALRTAHY----NC-YS--PTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR   95 (387)
Q Consensus        23 ~~~~~~~v~~a~~~~~~~~~~----~~-y~--~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~   95 (387)
                      +-|..+.+.+++.+.......    .+ ..  ......++++.+++++      ++  +++++++|+++++..++.++++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~------g~--~~i~~~~g~t~al~~~l~~~~~   81 (361)
T cd06452          10 GGRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFL------GM--DEARVTPGAREGKFAVMHSLCE   81 (361)
T ss_pred             CCCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHc------CC--ceEEEeCCHHHHHHHHHHHhcC
Confidence            678999999999998853211    00 11  1134578889999988      33  7899999999999999999999


Q ss_pred             CCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc-------cCceEEEEeCCCCCccccCCHH
Q 038416           96 PGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD-------ENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        96 ~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      +||+|+++.++|++....+.  ..|++++.++.+...++.+|+++++++++       ++++++++++|+||||...+  
T Consensus        82 ~gd~Vl~~~~~~~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~--  157 (361)
T cd06452          82 KGDWVVVDGLAHYTSYVAAE--RAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHD--  157 (361)
T ss_pred             CCCEEEEcCCcchHHHHHHH--hcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeecc--
Confidence            99999999999988777788  89999999998654456899999999886       36889999999999998855  


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD  248 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~  248 (387)
                       +++|.++|+++|+++|+|++|+...    ...+...++   ..++++|++|+++ ++.|+||+++++        ++++
T Consensus       158 -~~~i~~~~~~~~~~vivD~a~~~g~----~~~~~~~~~---~d~~~~s~~K~l~-~~~~~G~l~~~~--------~~~~  220 (361)
T cd06452         158 -AKKIAKVCHEYGVPLLLNGAYTVGR----MPVSGKELG---ADFIVGSGHKSMA-ASAPIGVLATTE--------EWAD  220 (361)
T ss_pred             -HHHHHHHHHHcCCeEEEECCcccCC----cCCCHHHcC---CCEEEecCCcccc-CCCCeEEEEECH--------HHHH
Confidence             8899999999999999999998421    111122222   3488999999986 445999999875        6777


Q ss_pred             HHHhhhhc---------cCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-CCCceEEEEE
Q 038416          249 SIKGCLNA---------ASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPV-KPQGAMFVMV  318 (387)
Q Consensus       249 ~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~g~~~~~  318 (387)
                      ++.+....         ..+.......++...+... .+.+++ ..+..++++++++.|++++++.++. .+...+++.+
T Consensus       221 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~~~~-~~~~~~~~~~l~~~L~~l~g~~v~~~~~~~~n~~~~  298 (361)
T cd06452         221 IVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPHV-KERVKR-WDEEVEKARWFVAELEKIEGIKQLGEKPKNHDLMFF  298 (361)
T ss_pred             HHhccccccccceeeeeccccCchHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHhcCCCeEEECCCCCCCceEEE
Confidence            77554321         0111111233333333321 122332 3333345578889999988877431 2334556666


Q ss_pred             ecCcccc---cCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe-eCChHhHHHHHHHHHHHH
Q 038416          319 KLNVSML---EDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF-AAEPATLEDGLERIKAFC  380 (387)
Q Consensus       319 ~~~~~~~---~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~-~~~~e~~~~~~~~l~~~~  380 (387)
                      +.+....   .......++...| .++||.+..   .+..+++|++. +.++++++.+++.|+++.
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~L-~~~gI~~~~---~~~~~~~ri~~~g~~~e~~~~l~~al~~~~  360 (361)
T cd06452         299 ETPSFDEIAKKHKRRGYFLYSEL-KKRGIHGIK---PGLTRYFKLSTYGLTWEQVEYVVDAFKEIA  360 (361)
T ss_pred             EcCCcchhhhhccccchhHHHHH-HHcCceEEc---CCCceEEEEEecCCCHHHHHHHHHHHHHHh
Confidence            5541000   0001123566666 556998532   23356899999 668999999999988654

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.97  E-value=2.6e-28  Score=223.71  Aligned_cols=317  Identities=14%  Similarity=0.109  Sum_probs=219.7

Q ss_pred             CCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCC
Q 038416           19 LGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGA   98 (387)
Q Consensus        19 ~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~   98 (387)
                      +++..+++++.+++++.+.....  ..|.+.....++++.+++++      +  ++++++++|+++++..++.++.++||
T Consensus         3 ~~~~~~~~~~~v~~a~~~~~~~~--~~~~~~~~~~~l~~~~a~~~------g--~~~~~~~~~gt~a~~~~~~~l~~~gd   72 (338)
T cd06502           3 RSDTVTGPTPEMLEAMAAANVGD--DVYGEDPTTAKLEARAAELF------G--KEAALFVPSGTAANQLALAAHTQPGG   72 (338)
T ss_pred             ccccCCCCCHHHHHHHHhcccCC--cccCCCHHHHHHHHHHHHHh------C--CCeEEEecCchHHHHHHHHHhcCCCC
Confidence            34445789999999998865432  24555556788888888887      2  56788888889999999999999999


Q ss_pred             eEEEcCCCCcchHH---HhhccCCCceeeeeccCCCCCccCChhhHHHhhcc-------CceEEEEeCCCCCccccCCHH
Q 038416           99 NILIPRPGYPLYEI---HAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE-------NTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        99 ~vl~~~p~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~v~l~~p~nptG~~~~~~  168 (387)
                      +|+++.|+|..+..   ...  ..|.++..++..  . +.+|++++++++++       ++++|++++|+|| |..++.+
T Consensus        73 ~v~~~~~~~~~~~~~~~~~~--~~g~~~~~v~~~--~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~  146 (338)
T cd06502          73 SVICHETAHIYTDEAGAPEF--LSGVKLLPVPGE--N-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLD  146 (338)
T ss_pred             eEEEecCcceeeecCCcHHH--HcCceEEeecCC--C-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHH
Confidence            99999999976442   344  578888888763  2 56899999999864       6889999999997 5566999


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEE-EeeCCCCcccchhHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWL-VTSDPNGILQNSGFV  247 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i-~~~~~~~~~~~~~~~  247 (387)
                      ++++|+++|+++|+++|+|++|..+.....+. ++..+..... +++.|+||+|+++|   |++ +.++        +++
T Consensus       147 ~l~~i~~~~~~~~~~livDea~~~~~~~~~~~-~~~~~~~~~d-~~~~s~sK~~~~~~---g~~~~~~~--------~~~  213 (338)
T cd06502         147 ELKAISALAKENGLPLHLDGARLANAAAALGV-ALKTYKSGVD-SVSFCLSKGGGAPV---GAVVVGNR--------DFI  213 (338)
T ss_pred             HHHHHHHHHHHcCCeEeechHHHHHHHHhcCC-CHHHHHhcCC-EEEEeccccCCCcc---ceEEECCH--------HHH
Confidence            99999999999999999999986432111111 2222211122 56789999998876   544 4443        677


Q ss_pred             HHHHhhhh---ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccc
Q 038416          248 DSIKGCLN---AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSM  324 (387)
Q Consensus       248 ~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~  324 (387)
                      +.+.....   .+.+.+++.+.++...|+..   ...+..+++.++++++.+.|+++ ++. + .+..++++.++++...
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~---~~~~~~~~~~~~~~~l~~~L~~~-~~~-~-~~~~~~~~~v~~~~~~  287 (338)
T cd06502         214 ARARRRRKQAGGGMRQSGFLAAAGLAALEND---LWLRRLRHDHEMARRLAEALEEL-GGL-E-SEVQTNIVLLDPVEAN  287 (338)
T ss_pred             HHHHHHHHHhCCChhhHHHHHHHHHHHhcCc---hHHHHHHHHHHHHHHHHHHHHhc-CCC-c-ccccCCeEEEecCCcc
Confidence            77765532   12334556666666666542   23445567777788999999988 444 3 3444556666654210


Q ss_pred             ccCCCcHHHHHHHHH--HhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHH
Q 038416          325 LEDIGDDLEFCLKLA--KEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKA  378 (387)
Q Consensus       325 ~~~~~~~~~~~~~ll--~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~  378 (387)
                          .....+..++.  .++|+.+.+..    .+++|++++  +++++++++++.+++
T Consensus       288 ----~~~~~l~~~l~~~~~~gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~  337 (338)
T cd06502         288 ----AVFVELSKEAIERRGEGVLFYAWG----EGGVRFVTHWDTTEEDVDELLSALKA  337 (338)
T ss_pred             ----HHHHHHHHHHHHhhhCCEEEEecC----CCeEEEEeecCCCHHHHHHHHHHHhc
Confidence                01112223222  15699887753    288999995  488999999998864

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PLN02721 threonine aldolase

Probab=99.97  E-value=7.7e-28  Score=221.96  Aligned_cols=319  Identities=16%  Similarity=0.139  Sum_probs=211.7

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC-CCCeEEEc
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR-PGANILIP  103 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-~g~~vl~~  103 (387)
                      .+++.+.+++..........+|++  ...+||+.++++++.        +.+++++++++++..++.++++ +||+|+++
T Consensus        17 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~l~~~la~~~~~--------~~~~~~~~Gs~a~~~~l~~~~~~~gd~Vl~~   86 (353)
T PLN02721         17 KPTDAMRAAMANAEVDDDVLGYDP--TALRLEEEMAKIFGK--------EAALFVPSGTMGNLISVLVHCDVRGSEVILG   86 (353)
T ss_pred             CCCHHHHHHHHhccCCCcccCCCH--HHHHHHHHHHHHhCC--------ceeEEecCccHHHHHHHHHHccCCCCeEEEc
Confidence            467888888876422222223433  368999999999942        3456666667777777777776 99999999


Q ss_pred             CCCCcchHH---HhhccCCCceeeeeccCCCCCccCChhhHHHhhc-------cCceEEEEeCC-CCCccccCCHHHHHH
Q 038416          104 RPGYPLYEI---HAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD-------ENTVAIVIINP-GNPCGNVFSYQHLQK  172 (387)
Q Consensus       104 ~p~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~v~l~~p-~nptG~~~~~~~~~~  172 (387)
                      +|+|.....   .+.  ..|.++..++.+  .++.+|+++++++++       +++++|+++++ +||||.+++.+++++
T Consensus        87 ~~~~~~~~~~~~~~~--~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~  162 (353)
T PLN02721         87 DNSHIHLYENGGIST--LGGVHPRTVKNN--EDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDK  162 (353)
T ss_pred             Cccceehhcccchhh--hcCceeEecCCC--cCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHH
Confidence            999875544   456  788888888764  345689999999987       57889999885 789999999999999


Q ss_pred             HHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEE-EEeeCCCCcccchhHHHHHH
Q 038416          173 IARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGW-LVTSDPNGILQNSGFVDSIK  251 (387)
Q Consensus       173 l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~-i~~~~~~~~~~~~~~~~~~~  251 (387)
                      |.++|+++|+++|+|++|.......... +...... ....++.|+||+++.   ++|+ ++.++        ++++.+.
T Consensus       163 l~~l~~~~g~~livD~a~~~~~~~~~~~-~~~~~~~-~~d~~~~s~sK~l~~---~~G~~~~~~~--------~~~~~~~  229 (353)
T PLN02721        163 VGELAKRHGLKLHIDGARIFNASVALGV-PVHRLVK-AADSVSVCLSKGLGA---PVGSVIVGSK--------SFIRKAK  229 (353)
T ss_pred             HHHHHHHcCCEEEEEchhhhcchhhhCC-CHHHHhh-hCCEEEEecccccCC---ceeeEEecCH--------HHHHhHH
Confidence            9999999999999999986321100011 1111111 112445579999753   3576 44433        6777665


Q ss_pred             hhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-CCCCCceEEEEEecCcccccCCC
Q 038416          252 GCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITC-PVKPQGAMFVMVKLNVSMLEDIG  329 (387)
Q Consensus       252 ~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~  329 (387)
                      .... ....+......++..+..  .+....+ .++..++++.+.+.|++++++.. +..+ .++++|++++...  + .
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~-~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~--~-~  302 (353)
T PLN02721        230 RLRKTLGGGMRQVGVLAAAALVA--LQENVPK-LEDDHKKAKLLAEGLNQIKGLRVNVAAV-ETNIVYFDITDGS--R-I  302 (353)
T ss_pred             HHHHhcCCCeehhHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHhCCCcEEecCCc-cceEEEEEccCCc--c-c
Confidence            5443 122222222222221111  1122232 33335667888899988877743 3233 4567888876410  0 1


Q ss_pred             cHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHH
Q 038416          330 DDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       330 ~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~  382 (387)
                      +..++...| .++||.+.|+.    ..++|++++  .+++++++++++|++++..
T Consensus       303 ~~~~~~~~L-~~~gi~v~~~~----~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~  352 (353)
T PLN02721        303 TAEKLCKSL-EEHGVLLMPGN----SSRIRVVTHHQISDSDVQYTLSCFQQAALT  352 (353)
T ss_pred             cHHHHHHHH-HhCCcEEecCC----CceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence            355677776 47799999974    578999995  5899999999999987753

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.97  E-value=4.6e-28  Score=223.98  Aligned_cols=325  Identities=16%  Similarity=0.166  Sum_probs=231.5

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCC
Q 038416           28 TVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGY  107 (387)
Q Consensus        28 ~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~  107 (387)
                      ..+.+++.+++..+. ..|....+..+||++++++++        .+++++|+|+++|+..++.+++++||.| +++|.|
T Consensus        32 ~ams~~~~~a~~~gd-~~Y~~~~g~~~Leeaia~~~g--------~~~vv~t~~Gt~Al~la~~al~~pGD~V-~~~~~f  101 (431)
T cd00617          32 GAMSDYQWAAMMLGD-EAYAGSKSFYDLEDAVQDLFG--------FKHIIPTHQGRGAENILFSILLKPGRTV-PSNMHF  101 (431)
T ss_pred             HHHHHHHHHHHHhCC-CccCCCCCHHHHHHHHHHHHC--------CCeEEEcCCHHHHHHHHHHHhCCCCCEE-ccCCcc
Confidence            366666666665443 369988999999999999993        3689999999999999999999999977 689999


Q ss_pred             cchHHHhhccCCCceeeeeccCCCCC------cc--CChhhHHHhhccC----ceEEEEeCCCCCc-cccCCHHHHHHHH
Q 038416          108 PLYEIHAAGSNNNLEARHYDLLPEKR------WE--VDLDGVEALADEN----TVAIVIINPGNPC-GNVFSYQHLQKIA  174 (387)
Q Consensus       108 ~~~~~~~~~~~~g~~~~~~~~~~~~~------~~--~~~~~l~~~~~~~----~~~v~l~~p~npt-G~~~~~~~~~~l~  174 (387)
                      ..+...+.  ..|.+++.+++.+..+      |.  +|++.|+++++++    +++|++++|+||+ |+.++.++++++.
T Consensus       102 ~~~~~~i~--~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~  179 (431)
T cd00617         102 DTTRGHIE--ANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVR  179 (431)
T ss_pred             cchHHHHH--hCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHH
Confidence            99988888  9999999998865432      44  9999999999765    7789999999998 9999999999999


Q ss_pred             HHHHhcCcEEeeccccccc--cc-----CCCCCccccccCCCccEEEEecCcccccccccc------eEEEEeeCCCCcc
Q 038416          175 RTARNLGIIVIADEVYNHL--AF-----GSTPYVPMGVFGSIVPVITLGSISKRWIVPGWR------LGWLVTSDPNGIL  241 (387)
Q Consensus       175 ~~~~~~~~~li~D~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r------~G~i~~~~~~~~~  241 (387)
                      ++|++||++||.|+++...  .+     ++....++..     ..+.+.|++|.+.+.|+|      .||+++++     
T Consensus       180 eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~e-----i~~e~~s~sd~~~mS~~K~~~~~~GG~i~~~d-----  249 (431)
T cd00617         180 ELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAE-----IAREMFSYADGCTMSAKKDGLVNIGGFLALRD-----  249 (431)
T ss_pred             HHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHH-----HHHHhhccCCEEEEEeecCCCCccceEEEeCc-----
Confidence            9999999999999996521  11     1211222221     123345666666666665      56888865     


Q ss_pred             cchhHHHHHHhhh----h-c-cCCcchHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceE
Q 038416          242 QNSGFVDSIKGCL----N-A-ASHPVTFIQAAVPRIVDET-NEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAM  314 (387)
Q Consensus       242 ~~~~~~~~~~~~~----~-~-~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~  314 (387)
                        ++++++++...    . . ..+.+.....+++..|... ..+++.    ...++++++.+.|++. |+.++ .|.+|+
T Consensus       250 --~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~~~~l~----~~~~~r~~l~~~L~~~-G~~v~-~P~Ggh  321 (431)
T cd00617         250 --DELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVEEDYLR----HRVEQVRYLGDRLDEA-GVPIV-EPAGGH  321 (431)
T ss_pred             --HHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhcccHHHHH----HHHHHHHHHHHHHHHC-CCCcc-CCCcce
Confidence              24777776432    1 0 1122333334444355432 123333    2333558888899888 78844 899999


Q ss_pred             EEEEecCccc--cc-CCCcHHHHHHHHHHhcCeEEEc-CCcc-CC-----------CCeEEEEee---CChHhHHHHHHH
Q 038416          315 FVMVKLNVSM--LE-DIGDDLEFCLKLAKEESVIILP-GRTV-GM-----------KNWLRIAFA---AEPATLEDGLER  375 (387)
Q Consensus       315 ~~~~~~~~~~--~~-~~~~~~~~~~~ll~~~gi~v~~-g~~~-~~-----------~~~~Ri~~~---~~~e~~~~~~~~  375 (387)
                      ++|++.+...  .+ ...++..++.+|+++.||.+.- |... +.           ...+|+++.   .+.+.++.+.+.
T Consensus       322 ~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~  401 (431)
T cd00617         322 AVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAA  401 (431)
T ss_pred             EEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEeccccccCHHHHHHHHHH
Confidence            9999876421  11 1114778898999999999653 3311 11           257999993   488999988888


Q ss_pred             HHHHHHH
Q 038416          376 IKAFCQR  382 (387)
Q Consensus       376 l~~~~~~  382 (387)
                      |..+.++
T Consensus       402 ~~~~~~~  408 (431)
T cd00617         402 VIALYER  408 (431)
T ss_pred             HHHHHhh
Confidence            8887765

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.97  E-value=7.5e-28  Score=223.82  Aligned_cols=325  Identities=13%  Similarity=0.114  Sum_probs=228.4

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCCC---------CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc-
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSPT---------LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA-   94 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~~---------~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-   94 (387)
                      ++|+.+++++.+.+....  .++..         ....++|+.+++++      ++++++|++|+|+++++..++.++. 
T Consensus        10 ~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~r~~la~~~------g~~~~~i~~t~~~t~a~~~al~~~~~   81 (379)
T TIGR03402        10 RVDPEVLEAMLPYFTEYF--GNPSSMHSFGGEVGKAVEEAREQVAKLL------GAEPDEIIFTSGGTESDNTAIKSALA   81 (379)
T ss_pred             CCCHHHHHHHHHHHHhcC--CCCCcccHHHHHHHHHHHHHHHHHHHHh------CCCCCeEEEeCcHHHHHHHHHHHHHH
Confidence            678899999998876421  22211         12446667777777      3567899999999999999998764 


Q ss_pred             --CCCCeEEEcCCCCcchHH---HhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHH
Q 038416           95 --RPGANILIPRPGYPLYEI---HAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQH  169 (387)
Q Consensus        95 --~~g~~vl~~~p~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~  169 (387)
                        .+|++|++...+|+++..   .+.  ..|.++..++++.  ++.+|+++++++++++++++++++++||||..+|   
T Consensus        82 ~~~~~~~vv~~~~~~~s~~~~~~~~~--~~G~~v~~v~~~~--~g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~---  154 (379)
T TIGR03402        82 AQPEKRHIITTAVEHPAVLSLCQHLE--KQGYKVTYLPVDE--EGRLDLEELRAAITDDTALVSVMWANNETGTIFP---  154 (379)
T ss_pred             hcCCCCeEEEcccccHHHHHHHHHHH--HcCCEEEEEccCC--CCcCCHHHHHHhcCCCcEEEEEEcccCCeeeccc---
Confidence              456889999988876543   334  5799999888743  3468999999999989999999999999999988   


Q ss_pred             HHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHH
Q 038416          170 LQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDS  249 (387)
Q Consensus       170 ~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~  249 (387)
                      +++|.++|+++|+++|+|++++.    +..+..+.....+   +++.|.+|.++++|  +|+++.++... . .|.+...
T Consensus       155 ~~~I~~l~~~~g~~vivD~~~~~----g~~~~~~~~~~~D---~~~~s~~K~~gp~G--~g~l~v~~~~~-~-~p~~~g~  223 (379)
T TIGR03402       155 IEEIGEIAKERGALFHTDAVQAV----GKIPIDLKEMNID---MLSLSGHKLHGPKG--VGALYIRKGTR-F-RPLLRGG  223 (379)
T ss_pred             HHHHHHHHHHcCCEEEEECcccc----cccccCcccCCCC---EEEEcHHHcCCCCc--eEEEEECCCCC-C-CCcccCC
Confidence            56889999999999999999984    2223333333333   77888999776666  78888765321 1 1222111


Q ss_pred             HHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCC---ce-EEEEEecCccc
Q 038416          250 IKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE-IPCITCPVKPQ---GA-MFVMVKLNVSM  324 (387)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~---~g-~~~~~~~~~~~  324 (387)
                      ........++++.....++.++++.. .+++++..++.+++++.+++.|++ ++++.....+.   ++ ..+++  +.  
T Consensus       224 ~~~~~~~~gt~~~~~~~~l~~al~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~--  298 (379)
T TIGR03402       224 HQERGRRAGTENVPGIVGLGKAAELA-TEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISF--EY--  298 (379)
T ss_pred             ccCCCcCCCCccHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEe--cC--
Confidence            10111124567777777777777653 346777778888899999999885 77776442221   12 22232  21  


Q ss_pred             ccCCCcHHHHHHHHHHhcCeEEEcCCccCC-------------------CCeEEEEee--CChHhHHHHHHHHHHHHHHh
Q 038416          325 LEDIGDDLEFCLKLAKEESVIILPGRTVGM-------------------KNWLRIAFA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       325 ~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-------------------~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                          .+..++...| +++||.+.+|..|..                   .+.+|+|++  ++++|++++++.|+++++++
T Consensus       299 ----~~~~~~~~~l-~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~  373 (379)
T TIGR03402       299 ----IEGEAILLLL-DMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARL  373 (379)
T ss_pred             ----CCHHHHHHhh-ccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence                1345666655 677999999876632                   268999995  58999999999999998876


Q ss_pred             hh
Q 038416          384 AK  385 (387)
Q Consensus       384 ~~  385 (387)
                      ++
T Consensus       374 ~~  375 (379)
T TIGR03402       374 RA  375 (379)
T ss_pred             Hh
Confidence            53

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.97  E-value=7.9e-28  Score=224.23  Aligned_cols=326  Identities=13%  Similarity=0.075  Sum_probs=238.8

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcC
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPR  104 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~  104 (387)
                      ..++.+++++....    ..++  ..+..++++.+.+.+++.++.. ..+.+++++++++++..++..++++||+|++.+
T Consensus        19 ~~~~~V~~a~~~~~----~~~~--~~~~~~~~~~~~~~l~~~~g~~-~~~~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~   91 (401)
T PLN02409         19 NIPERVLRAMNRPN----EDHR--SPAFPALTKELLEDVKYIFKTK-SGTPFIFPTTGTGAWESALTNTLSPGDKVVSFR   91 (401)
T ss_pred             CCCHHHHHHhcCCC----CCCC--CHHHHHHHHHHHHHHHHHhCCC-CCCEEEEeCCcHHHHHHHHHhcCCCCCEEEEeC
Confidence            57778887775533    2222  2355777888887777766642 234678888999999999999999999999999


Q ss_pred             CCCcch--HHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc----CceEEEEeCCCCCccccCCHHHHHHHHHHHH
Q 038416          105 PGYPLY--EIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE----NTVAIVIINPGNPCGNVFSYQHLQKIARTAR  178 (387)
Q Consensus       105 p~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~  178 (387)
                      ++|++.  ...++  ..|.+++.++.+..  ..++++++++++++    ++++|++++++||||.++|.+++.++++ |+
T Consensus        92 ~~~~~~~~~~~~~--~~g~~v~~v~~~~~--~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~-~~  166 (401)
T PLN02409         92 IGQFSLLWIDQMQ--RLNFDVDVVESPWG--QGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLD-CA  166 (401)
T ss_pred             CCchhHHHHHHHH--HcCCceEEEECCCC--CCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHh-hh
Confidence            999765  46677  78999999987532  34789999999875    6899999999999999999666666655 99


Q ss_pred             hcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhh----
Q 038416          179 NLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL----  254 (387)
Q Consensus       179 ~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~----  254 (387)
                      ++|+++|+|++++.    +..+..+..++.   .+++.|.+|+++.| .++||++.++        +.++++....    
T Consensus       167 ~~g~~~vvD~v~s~----g~~~id~~~~~~---D~~~~s~~K~l~~P-~G~G~l~~~~--------~~~~~~~~~~~~~~  230 (401)
T PLN02409        167 QHPALLLVDGVSSI----GALDFRMDEWGV---DVALTGSQKALSLP-TGLGIVCASP--------KALEASKTAKSPRV  230 (401)
T ss_pred             ccCcEEEEEccccc----CCccccccccCc---cEEEEcCccccCcC-CCcceeEECH--------HHHHHHhcCCCCCe
Confidence            99999999999874    222222222322   37778889997543 3599999875        4444443210    


Q ss_pred             ------------h--c-cCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC---ceEEE
Q 038416          255 ------------N--A-ASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ---GAMFV  316 (387)
Q Consensus       255 ------------~--~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~g~~~  316 (387)
                                  .  . .++++...+.++.++++...+..++++.++++++++++++.|+++ +++++....   .....
T Consensus       231 ~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~-g~~~~~~~~~~~s~~v~  309 (401)
T PLN02409        231 FFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAW-GLKLCTKKPEWRSDTVT  309 (401)
T ss_pred             ecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcccceE
Confidence                        0  1 336667778888888886666778889999999999999999887 677543211   22334


Q ss_pred             EEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHHHHhh
Q 038416          317 MVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      ++.++..     .+..++...+++++||.+.+|.....++.|||+.  ..+.+++..++.+|++++.+..
T Consensus       310 ~~~~p~~-----~~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~g  374 (401)
T PLN02409        310 AVVVPEG-----IDSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLKDVG  374 (401)
T ss_pred             EEeCCCC-----CCHHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            5555431     2456777788889999999987654578999999  3588999999999999987653

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.97  E-value=2.4e-28  Score=215.93  Aligned_cols=332  Identities=14%  Similarity=0.126  Sum_probs=245.4

Q ss_pred             CCCcHHHHHHHHHHhcCCCC-----CCCCC--CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh--c
Q 038416           24 LSDSTVAEDAVVDALRTAHY-----NCYSP--TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL--A   94 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~-----~~y~~--~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l--~   94 (387)
                      .|+.|+++++|...+.....     ..|+.  ....++.|+.||+.+      ++++++|++|+|+|++.+.++...  .
T Consensus        11 Tp~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~ll------ga~~~eIiFTSG~TEsnNlaI~g~~~a   84 (386)
T COG1104          11 TPVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLL------GADPEEIIFTSGATESNNLAIKGAALA   84 (386)
T ss_pred             CCCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHh------CCCCCeEEEecCCcHHHHHHHHhhHHh
Confidence            47889999999998876311     11221  123567788999998      568899999999999999999873  2


Q ss_pred             ----CCCCeEEEcCCCCcchHHHhhcc-CCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHH
Q 038416           95 ----RPGANILIPRPGYPLYEIHAAGS-NNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQH  169 (387)
Q Consensus        95 ----~~g~~vl~~~p~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~  169 (387)
                          ++|.+|+++.-.|+.+...++.. ..|.++.+++++.  +..+|+++|+++++++|.+|.++..||.+|++.|   
T Consensus        85 ~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~--~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQp---  159 (386)
T COG1104          85 YRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDS--NGLVDLEQLEEALRPDTILVSIMHANNETGTIQP---  159 (386)
T ss_pred             hhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCC--CCeEcHHHHHHhcCCCceEEEEEecccCeeeccc---
Confidence                25789999999999877666611 4599999999864  4479999999999999999999999999999977   


Q ss_pred             HHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHH
Q 038416          170 LQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDS  249 (387)
Q Consensus       170 ~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~  249 (387)
                      +++|.++|+++++++++|.+++.    |+-+..+..+.-+   +...|-+|..|+.|  +|.++.++..  .-.|.+...
T Consensus       160 I~ei~~i~k~~~i~fHvDAvQa~----Gkipi~~~~~~vD---~ls~SaHK~~GpkG--iGaLyv~~~~--~~~p~i~GG  228 (386)
T COG1104         160 IAEIGEICKERGILFHVDAVQAV----GKIPIDLEELGVD---LLSFSAHKFGGPKG--IGALYVRPGV--RLEPLIHGG  228 (386)
T ss_pred             HHHHHHHHHHcCCeEEEehhhhc----CceeccccccCcc---eEEeehhhccCCCc--eEEEEECCCC--ccCceeccC
Confidence            89999999999999999999995    4434444443333   66778999988888  7888875422  111121111


Q ss_pred             HHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCC--CceEEEEEecCccccc
Q 038416          250 IKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEI-PCITCPVKP--QGAMFVMVKLNVSMLE  326 (387)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~--~~g~~~~~~~~~~~~~  326 (387)
                      -.......++.+.++..++..+++. ..+.++....++...++++.+.|.+. |++.+...+  .-.+.+.+.|+.    
T Consensus       229 gQE~g~RsGTenv~~Ivg~~~A~~~-a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~g----  303 (386)
T COG1104         229 GQERGLRSGTENVPGIVGFGKAAEI-AVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPG----  303 (386)
T ss_pred             cCCCCCCCCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCC----
Confidence            1111124567788888888888774 34557888899999999999999974 666533222  123344445543    


Q ss_pred             CCCcHHHHHHHHHHhcCeEEEcCCccCC-------------------CCeEEEEee--CChHhHHHHHHHHHHHHHHhhh
Q 038416          327 DIGDDLEFCLKLAKEESVIILPGRTVGM-------------------KNWLRIAFA--AEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       327 ~~~~~~~~~~~ll~~~gi~v~~g~~~~~-------------------~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                       + ..+.+... +..+||.+..|+.|..                   ...+|+|++  ++++|++.+++.+.++++++++
T Consensus       304 -v-~gE~ll~~-L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr~  380 (386)
T COG1104         304 -V-EGESLLLA-LDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLRE  380 (386)
T ss_pred             -C-cHHHHHHh-ccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence             1 44455554 5788999999998853                   357999995  5789999999999999999875

>PRK02948 cysteine desulfurase; Provisional

Probab=99.97  E-value=3.2e-28  Score=226.50  Aligned_cols=326  Identities=12%  Similarity=0.068  Sum_probs=226.6

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCC--------CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc--
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSP--------TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA--   94 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~--------~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--   94 (387)
                      ++|+.+.+++.+.+..... +.+.        ..-..++|+.+++++      +.++++|++++|+++++..++.++.  
T Consensus        11 ~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~~la~~~------g~~~~~i~~~~g~t~a~~~~~~~~~~~   83 (381)
T PRK02948         11 PMSKEALQTYQKAASQYFG-NESSLHDIGGTASSLLQVCRKTFAEMI------GGEEQGIYFTSGGTESNYLAIQSLLNA   83 (381)
T ss_pred             CCCHHHHHHHHHHHHhcCC-CCccccHHHHHHHHHHHHHHHHHHHHh------CCCCCeEEEeCcHHHHHHHHHHHHHHh
Confidence            5788999999888764211 1111        012456777777777      4577899999999999999988875  


Q ss_pred             --CCCCeEEEcCCCCcchHH---HhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHH
Q 038416           95 --RPGANILIPRPGYPLYEI---HAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQH  169 (387)
Q Consensus        95 --~~g~~vl~~~p~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~  169 (387)
                        ++|+.|++....|+++..   .++  ..|.++..++++  .++.+|++++++++++++++|++++|+||||.++|   
T Consensus        84 ~~~~g~~vv~~~~~h~s~~~~~~~~~--~~g~~v~~v~~~--~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~---  156 (381)
T PRK02948         84 LPQNKKHIITTPMEHASIHSYFQSLE--SQGYTVTEIPVD--KSGLIRLVDLERAITPDTVLASIQHANSEIGTIQP---  156 (381)
T ss_pred             ccCCCCEEEECCcccHHHHHHHHHHH--hCCCEEEEEeeC--CCCCCCHHHHHHhcCCCCEEEEEECCcCCcEeehh---
Confidence              568999999877776543   455  679999988875  33568999999999888999999999999999987   


Q ss_pred             HHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHH-
Q 038416          170 LQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD-  248 (387)
Q Consensus       170 ~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~-  248 (387)
                      +++|.++|+++|+++|+|++++..    .....+..+   +..+++.|++|.+|++|  +|++++++.....   .... 
T Consensus       157 ~~~I~~l~~~~~~~vivD~~~~~g----~~~~~~~~~---~~d~~~~s~~K~~gp~G--~G~l~~~~~~~~~---~~~~~  224 (381)
T PRK02948        157 IAEIGALLKKYNVLFHSDCVQTFG----KLPIDVFEM---GIDSLSVSAHKIYGPKG--VGAVYINPQVRWK---PVFPG  224 (381)
T ss_pred             HHHHHHHHHHcCCEEEEEChhhcc----ccccCcccC---CCCEEEecHHhcCCCCc--EEEEEEcCCCCCC---CcccC
Confidence            678888999999999999877631    111122222   33478899999988888  7998876521100   0000 


Q ss_pred             HHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEE---EecCcccc
Q 038416          249 SIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVM---VKLNVSML  325 (387)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~---~~~~~~~~  325 (387)
                      .........++++.+++.++..+++... +++++..+++.++++++++.|+++ ++.+. ......+..   +.+..   
T Consensus       225 ~~~~~~~~~~t~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-~~~v~-~~~~~~~~~~~i~~~~~---  298 (381)
T PRK02948        225 TTHEKGFRPGTVNVPGIAAFLTAAENIL-KNMQEESLRFKELRSYFLEQIQTL-PLPIE-VEGHSTSCLPHIIGVTI---  298 (381)
T ss_pred             CCCCCCcCCCCccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcC-CCCEE-EeCCCccCcCCEEEEEe---
Confidence            0000011245778888888888887533 467888899999999999999988 55422 111111111   11111   


Q ss_pred             cCCCcHHHHHHHHHHhcCeEEEcCCccCC-------------------CCeEEEEee--CChHhHHHHHHHHHHHHHHhh
Q 038416          326 EDIGDDLEFCLKLAKEESVIILPGRTVGM-------------------KNWLRIAFA--AEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       326 ~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-------------------~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      ++. +..++...+ .++||.+.+|..|..                   .+++|+|++  ++++|++++++.|+++++++.
T Consensus       299 ~~~-~~~~~~~~l-~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~  376 (381)
T PRK02948        299 KGI-EGQYTMLEC-NRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGNQFY  376 (381)
T ss_pred             CCC-CHHHHHHhc-ccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            111 345565555 677999998775311                   368999995  589999999999999887654

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.97  E-value=6.7e-28  Score=225.71  Aligned_cols=315  Identities=17%  Similarity=0.179  Sum_probs=217.9

Q ss_pred             CCcHHHHHHHHHHhcCCCC---CCCCCCCC----cHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh---c
Q 038416           25 SDSTVAEDAVVDALRTAHY---NCYSPTLG----VPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL---A   94 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~---~~y~~~~~----~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l---~   94 (387)
                      ++|+.+++++.+.+.....   ..|....+    ..++|+.+++++      +.++++|++++|+++++..++.++   .
T Consensus        28 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~------~~~~~~v~~~~~~t~~l~~~~~~~~~~~  101 (397)
T TIGR01976        28 QIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLL------NADPPEVVFGANATSLTFLLSRAISRRW  101 (397)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHc------CCCCCeEEEeCCHHHHHHHHHHHHHhcC
Confidence            5788999999988764211   12432222    357788888887      345567999999999998887775   5


Q ss_pred             CCCCeEEEcCCCCcchH----HHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHH
Q 038416           95 RPGANILIPRPGYPLYE----IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHL  170 (387)
Q Consensus        95 ~~g~~vl~~~p~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~  170 (387)
                      ++||+|++..++|++..    ..++  ..|.++..++++++ ++.+++++++++++++++++++++|+||||..++   +
T Consensus       102 ~~gd~vl~~~~~~~s~~~~~~~~~~--~~g~~~~~~~~~~~-~~~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~---~  175 (397)
T TIGR01976       102 GPGDEVIVTRLDHEANISPWLQAAE--RAGAKVKWARVDEA-TGELHPDDLASLLSPRTRLVAVTAASNTLGSIVD---L  175 (397)
T ss_pred             CCCCEEEEcCCchHhHHHHHHHHHH--hcCCEEEEEecccc-CCCcCHHHHHHhcCCCceEEEEeCCCCCCCccCC---H
Confidence            89999999999987643    4556  78999999987642 3578999999999889999999999999999977   8


Q ss_pred             HHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHH
Q 038416          171 QKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSI  250 (387)
Q Consensus       171 ~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~  250 (387)
                      ++|.++|+++|+++|+|+++..    +.....+....   ..+++.|++|++   |.|+|++++++        ++++++
T Consensus       176 ~~i~~~~~~~~~~~ivD~a~~~----~~~~~~~~~~~---~d~~~~s~~K~~---g~~~G~l~~~~--------~~~~~l  237 (397)
T TIGR01976       176 AAITELVHAAGALVVVDAVHYA----PHGLIDVQATG---ADFLTCSAYKFF---GPHMGILWGRP--------ELLMNL  237 (397)
T ss_pred             HHHHHHHHHcCCEEEEehhhhc----cccCCCHHHcC---CCEEEEechhhc---CCceEEEEEcH--------HHHhhC
Confidence            8889999999999999999853    22222222222   236778999996   35689999875        455554


Q ss_pred             Hhhhh-----------ccCCcchHHHHHHHHHhhhccH--------------HHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 038416          251 KGCLN-----------AASHPVTFIQAAVPRIVDETNE--------------AFFAKIIGLLKETADICYERIKEIPCIT  305 (387)
Q Consensus       251 ~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~  305 (387)
                      .....           -.++++.....++..+++...+              .++++..++..+.++++++.|++++++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~  317 (397)
T TIGR01976       238 PPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVT  317 (397)
T ss_pred             CCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence            43211           0123333333444333332111              1356677778888899999998887677


Q ss_pred             CCCC---CCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccC-----------CCCeEEEEee--CChHhH
Q 038416          306 CPVK---PQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG-----------MKNWLRIAFA--AEPATL  369 (387)
Q Consensus       306 ~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~-----------~~~~~Ri~~~--~~~e~~  369 (387)
                      ++..   ...+.++.+.++.      .+..++...| +++||.+..|..+.           ..+++|||++  ++++|+
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~L-~~~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di  390 (397)
T TIGR01976       318 LYGVARLAARVPTVSFTVHG------LPPQRVVRRL-ADQGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEV  390 (397)
T ss_pred             EeCCCCccCCCceEEEEeCC------cCHHHHHHHH-HHCCeEEEeCccchHHHHHHhCCCCCCCeEEEEeeccCCHHHH
Confidence            4422   1134455555542      1345566655 66799999875543           2468999994  588999


Q ss_pred             HHHHHHH
Q 038416          370 EDGLERI  376 (387)
Q Consensus       370 ~~~~~~l  376 (387)
                      +++++.|
T Consensus       391 ~~l~~~l  397 (397)
T TIGR01976       391 DRLLEAL  397 (397)
T ss_pred             HHHHHhC
Confidence            9988764

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.97  E-value=9e-28  Score=223.03  Aligned_cols=315  Identities=19%  Similarity=0.196  Sum_probs=224.1

Q ss_pred             CCcHHHHHHHHHHhcCCCCC-CCCC-------CCCcHHHHHHHHHHHhhcCCCCCC-CCCEEEcCChHHHHHHHHHhhcC
Q 038416           25 SDSTVAEDAVVDALRTAHYN-CYSP-------TLGVPSARRGIADYLNRDLPYKLS-PEDVYLTLGCSQAIEISLSVLAR   95 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~-~y~~-------~~~~~~lr~~ia~~~~~~~~~~~~-~~~i~~~~g~~~a~~~~~~~l~~   95 (387)
                      ++|+.+.+++++.+.....+ +.+.       .....++|+.++++++      .+ ++++++|+|+++++..++.++..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~~v~~~~g~t~a~~~~~~~l~~   83 (373)
T cd06453          10 QKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFIN------APSPDEIIFTRNTTEAINLVAYGLGR   83 (373)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhC------CCCCCeEEEeCCHHHHHHHHHHHhhh
Confidence            57788999998887532111 1111       1234578888888883      34 67999999999999999999987


Q ss_pred             ---CCCeEEEcCCCCcch----HHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           96 ---PGANILIPRPGYPLY----EIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        96 ---~g~~vl~~~p~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                         +||+|+++.++|++.    ....+  ..|.++..++.+  .++.+|++++++.+++++++|++++++||||...+  
T Consensus        84 ~~~~g~~vl~~~~~~~~~~~~~~~~~~--~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~--  157 (373)
T cd06453          84 ANKPGDEIVTSVMEHHSNIVPWQQLAE--RTGAKLKVVPVD--DDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINP--  157 (373)
T ss_pred             cCCCCCEEEECcchhHHHHHHHHHHHh--hcCcEEEEeecC--CCCCcCHHHHHHHhcCCceEEEEeCcccccCCcCC--
Confidence               899999999999874    34455  678999999875  34578999999999889999999999999999988  


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD  248 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~  248 (387)
                       +++|+++|+++|+++|+|++++...    ...++.....   .+++.|++|+++.  .++|++++++        ++++
T Consensus       158 -~~~i~~~~~~~~~~li~D~a~~~~~----~~~~~~~~~~---d~~~~s~~K~~~~--~g~g~~~~~~--------~~~~  219 (373)
T cd06453         158 -VKEIGEIAHEAGVPVLVDGAQSAGH----MPVDVQDLGC---DFLAFSGHKMLGP--TGIGVLYGKE--------ELLE  219 (373)
T ss_pred             -HHHHHHHHHHcCCEEEEEhhhhcCc----eeeeccccCC---CEEEeccccccCC--CCcEEEEEch--------HHhh
Confidence             6788899999999999999987422    1112222222   3677899999765  4589999875        4544


Q ss_pred             HHHhhhh---------------------c-cCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 038416          249 SIKGCLN---------------------A-ASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITC  306 (387)
Q Consensus       249 ~~~~~~~---------------------~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  306 (387)
                      .+.....                     + ..+++.....++..+++...+..++++.++..++++++.+.|++++++.+
T Consensus       220 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~  299 (373)
T cd06453         220 EMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRV  299 (373)
T ss_pred             cCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence            4432210                     0 12344455555565665544455677788888899999999998887774


Q ss_pred             CCCC-CceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCcc--------CCCCeEEEEee--CChHhHHHHHHH
Q 038416          307 PVKP-QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTV--------GMKNWLRIAFA--AEPATLEDGLER  375 (387)
Q Consensus       307 ~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~--------~~~~~~Ri~~~--~~~e~~~~~~~~  375 (387)
                      +..+ ..+.++++.++.      .+..++.+.+ .++||.+.+|..+        +.++++|++++  +++++++++++.
T Consensus       300 ~~~~~~~~~~~~~~~~~------~~~~~i~~~l-~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~  372 (373)
T cd06453         300 YGDAEDRAGVVSFNLEG------IHPHDVATIL-DQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEA  372 (373)
T ss_pred             eCCccccCCeEEEEECC------cCHHHHHHHH-HHCCEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhh
Confidence            4221 124455655542      1445666665 5679999887643        23579999996  589999999876


Q ss_pred             H
Q 038416          376 I  376 (387)
Q Consensus       376 l  376 (387)
                      |
T Consensus       373 l  373 (373)
T cd06453         373 L  373 (373)
T ss_pred             C
Confidence            4

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.97  E-value=1.2e-27  Score=222.57  Aligned_cols=331  Identities=12%  Similarity=0.122  Sum_probs=220.7

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCC--CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAH--YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI   86 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~   86 (387)
                      .++++.-|....+.++ .+|.+.+++.+++....  ...|+ .....++++.+++++    +    .+++++++|+++++
T Consensus        28 ~~id~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~la~~~----g----~~~~~~~~sg~~a~   97 (379)
T TIGR00707        28 EYLDFVAGIAVNSLGH-AHPKLVEALKEQLEKLVHVSNLYY-TEPQEELAEKLVEHS----G----ADRVFFCNSGAEAN   97 (379)
T ss_pred             EEEEcCcchhhccCCC-CCHHHHHHHHHHHhhccccccccC-CHHHHHHHHHHHhhC----C----CCEEEEeCCcHHHH
Confidence            4555555433222232 56899999999887531  11232 223445555555554    2    35999999999999


Q ss_pred             HHHHHhhc---C----CCCeEEEcCCCCcchHHHhhccCCCceee----eeccCCCCCccC--ChhhHHHhhccCceEEE
Q 038416           87 EISLSVLA---R----PGANILIPRPGYPLYEIHAAGSNNNLEAR----HYDLLPEKRWEV--DLDGVEALADENTVAIV  153 (387)
Q Consensus        87 ~~~~~~l~---~----~g~~vl~~~p~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~--~~~~l~~~~~~~~~~v~  153 (387)
                      ..+++.+.   .    +|++|+++.|+|+.+...+.  ..+....    ..++..+..+..  |++.+++.+++++++|+
T Consensus        98 ~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~  175 (379)
T TIGR00707        98 EAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGAL--SATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDDETAAVI  175 (379)
T ss_pred             HHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHH--HhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhhhCeeEEE
Confidence            99998662   2    37999999999988766655  4443321    122221111111  78999999887888888


Q ss_pred             EeCCCCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEE
Q 038416          154 IINPGNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWL  232 (387)
Q Consensus       154 l~~p~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i  232 (387)
                      ++.++|++|.. ++.+++++|.++|+++++++|+||+|.++.+.+.. .++.......++   .++||.++ +|+|+||+
T Consensus       176 ~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~-~~~~~~~~~~d~---~t~sK~~~-~G~riG~~  250 (379)
T TIGR00707       176 VEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKF-FAYEHYGIEPDI---ITLAKGLG-GGVPIGAT  250 (379)
T ss_pred             EEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchh-hhHHhcCCCCCE---EEEccccc-CCcccEEE
Confidence            87667788874 68999999999999999999999999987665532 121112212222   36899988 99999999


Q ss_pred             EeeCCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCCCC
Q 038416          233 VTSDPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIP-CITCPVKP  310 (387)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~  310 (387)
                      ++++        ++++.+.... ...++.+++.+.++.++|+....   .+..++++++++.+++.|+++. .......+
T Consensus       251 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  319 (379)
T TIGR00707       251 LAKE--------EVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEK---ERLLENVKEKGDYFKERLEELGKNYPNKEVR  319 (379)
T ss_pred             EEcH--------HHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHhhCCCCccc
Confidence            9875        6777776532 23456788899988888764221   2345566666667766666531 11111123


Q ss_pred             CceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHH
Q 038416          311 QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAF  379 (387)
Q Consensus       311 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~  379 (387)
                      ..|.++|+.++.       +..++...+ .++||.+.|+.    .+++||+++  .+++++++++++|+++
T Consensus       320 ~~g~~~~~~~~~-------~~~~~~~~l-~~~Gv~v~~~~----~~~lRi~~~~~~t~~~i~~~~~~l~~~  378 (379)
T TIGR00707       320 GKGLMLGIELEA-------PCKDIVKKA-LEKGLLVNCAG----PKVLRFLPPLIITKEEIDEAVSALEEA  378 (379)
T ss_pred             cCceEEEEEecC-------cHHHHHHHH-HHCCcEEeeCC----CCEEEEECCCcCCHHHHHHHHHHHHHh
Confidence            457788888753       345566654 67799999863    478999983  5899999999999875

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK07049 methionine gamma-lyase; Validated

Probab=99.97  E-value=2.9e-27  Score=220.50  Aligned_cols=231  Identities=16%  Similarity=0.149  Sum_probs=178.8

Q ss_pred             CCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhh--ccCCCc
Q 038416           44 NCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAA--GSNNNL  121 (387)
Q Consensus        44 ~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~--~~~~g~  121 (387)
                      ..|+. .....|++.+|++.        ..+++++++||++|+..++.+++++||+|+++.|+|..+...+.  ....|+
T Consensus        78 ~R~~~-Pt~~~Le~~lA~le--------g~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi  148 (427)
T PRK07049         78 SRFNH-PNSEIVEDRLAVYE--------GAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGV  148 (427)
T ss_pred             cCCCC-cCHHHHHHHHHHHh--------CCCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCc
Confidence            44554 46689999999988        34578899999999999999999999999999999999866532  015788


Q ss_pred             eeeeeccCCCCCccCChhhHHHhhc-----cCceEEEEeCCCCCccccCCHHHHHHHHHHHHh---cCcEEeeccccccc
Q 038416          122 EARHYDLLPEKRWEVDLDGVEALAD-----ENTVAIVIINPGNPCGNVFSYQHLQKIARTARN---LGIIVIADEVYNHL  193 (387)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~---~~~~li~D~~~~~~  193 (387)
                      +++.++.      ..|++++++++.     +++++|++++|+||||.+++.+++.++++.|+.   +++++|+|++|...
T Consensus       149 ~~v~~~~------~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~  222 (427)
T PRK07049        149 GAVGFAD------GLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGP  222 (427)
T ss_pred             EEEEEeC------CCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCcccc
Confidence            7666642      246677776653     478999999999999999999999999988654   68999999998754


Q ss_pred             ccCCCCCccccccCCCccEEEEecCccccc-ccccceEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHH
Q 038416          194 AFGSTPYVPMGVFGSIVPVITLGSISKRWI-VPGWRLGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRI  271 (387)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~-~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  271 (387)
                      ...    .++. .   +..+++.|+||.++ .+|+|+||+++++        ++++.++.... .+...+++.++++...
T Consensus       223 ~~~----~pl~-~---g~divv~S~SK~~gG~~glr~G~vv~~~--------~l~~~l~~~~~~~g~~ls~~~a~l~~r~  286 (427)
T PRK07049        223 VFQ----KPLE-H---GADLSVYSLTKYVGGHSDLVAGAVLGRK--------ALIRQVRALRSAIGTQLDPHSCWMLGRS  286 (427)
T ss_pred             ccC----Cccc-c---CCCEEEEcCceeecCCCCcEEEEEECCH--------HHHHHHHHHHHhcCCCCCHHHHHHHHcC
Confidence            321    1221 1   23488899999998 6999999999865        67787876654 4566788888887776


Q ss_pred             hhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 038416          272 VDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKP  310 (387)
Q Consensus       272 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  310 (387)
                      ++.     +..+.++..++++.+.+.|++.|++..+.+|
T Consensus       287 L~t-----l~~R~~~~~~~a~~la~~L~~~p~V~~v~yp  320 (427)
T PRK07049        287 LET-----LVLRMERANRNARAVAEFLRDHPKVEKLHYL  320 (427)
T ss_pred             CCh-----HHHHHHHHHHHHHHHHHHHHhCCCccEEECC
Confidence            653     5666777799999999999998877655555

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.97  E-value=3.6e-27  Score=219.39  Aligned_cols=331  Identities=11%  Similarity=0.097  Sum_probs=233.5

Q ss_pred             CCcHHHHHHHHHHhcCCCCC-----CCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc-----
Q 038416           25 SDSTVAEDAVVDALRTAHYN-----CYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA-----   94 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~-----~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-----   94 (387)
                      +.++.+++++.+.......+     .|+ ..+...+++.++++... .+. .++++|++|+|+++++..+++++.     
T Consensus        10 ~~~~~v~~~~~~~~~~~~~n~~~~~~~~-~~~~~~l~~a~~~~~~~-~~~-~~~~~i~~t~g~teal~~~~~~~~~~~~~   86 (382)
T TIGR03403        10 MLDPKVKELMDPFFCDIYGNPNSLHQFG-TATHPAIAEALDKLYKG-INA-RDLDDIIITSCATESNNWVLKGVYFDEIL   86 (382)
T ss_pred             CCCHHHHHHHHHHHHhcCcCCccccHHH-HHHHHHHHHHHHHHHHH-cCc-CCCCeEEEeCCHHHHHHHHHHHHHHhhcc
Confidence            57788999999988642111     122 13456788888877753 221 257899999999999999998762     


Q ss_pred             CC-CCeEEEcCCCCcchHHH---hhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHH
Q 038416           95 RP-GANILIPRPGYPLYEIH---AAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHL  170 (387)
Q Consensus        95 ~~-g~~vl~~~p~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~  170 (387)
                      ++ +++|+++...|+++...   ++  ..|.++..+++++  ++.+|+++++++++++++++++++|+||||..+|   +
T Consensus        87 ~~~~~~vi~~~~e~ps~~~~~~~~~--~~G~~v~~v~~~~--~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~---~  159 (382)
T TIGR03403        87 KGGKNHIITTEVEHPAVRATCAFLE--SLGVEVTYLPINE--QGTITAEQVREAITEKTALVSVMWANNETGMIFP---I  159 (382)
T ss_pred             cCCCCEEEEcCCccHHHHHHHHHHH--HCCCEEEEEecCC--CCCCCHHHHHHhcccCCeEEEEEcccCCCccccC---H
Confidence            45 47899998777765433   45  6899999998753  3468999999999989999999999999999998   6


Q ss_pred             HHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHH
Q 038416          171 QKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSI  250 (387)
Q Consensus       171 ~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~  250 (387)
                      ++|.++|+++|+++|+|++++.    +.....+.....   .+++.|++|++|++|  +|+++.++...+  .|.+....
T Consensus       160 ~~I~~la~~~g~~~ivD~a~~~----g~~~~~~~~~~~---D~~~~s~~K~~gp~G--~g~l~vr~~~~~--~p~~~g~~  228 (382)
T TIGR03403       160 KEIGEICKERGVLFHTDAVQAI----GKIPVDVQKAGV---DFLSFSAHKFHGPKG--VGGLYIRKGVEL--TPLFHGGE  228 (382)
T ss_pred             HHHHHHHHHcCCEEEEechhhc----CCCccCccccCC---CEEEEcchhhCCCCc--eEEEEECCCCCC--CCcccCCC
Confidence            6888888999999999999874    211122222222   288899999887777  688887653211  12111000


Q ss_pred             HhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC---ceEEEEEecCcccccC
Q 038416          251 KGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ---GAMFVMVKLNVSMLED  327 (387)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~  327 (387)
                      .......++++.+.+.++..+++.. .++++...++++++++++.+.|++++++.++ .+.   ...++.+.++.     
T Consensus       229 ~~~~~~~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~-----  301 (382)
T TIGR03403       229 HMGGRRSGTLNVPYIVAMGEAMRLA-NEYLDFEKSHVRRLRDRLEDALLELPDVFVV-GDREHRVPNTILISIKG-----  301 (382)
T ss_pred             CCCCcccCCcChHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhcCCCEEEE-CCCCCCcCCEEEEEeCC-----
Confidence            0001124677888888888887643 3457777888999999999999988888754 332   13344454542     


Q ss_pred             CCcHHHHHHHHHHhcCeEEEcCCccC--------------C-----CCeEEEEee--CChHhHHHHHHHHHHHHHHhhh
Q 038416          328 IGDDLEFCLKLAKEESVIILPGRTVG--------------M-----KNWLRIAFA--AEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       328 ~~~~~~~~~~ll~~~gi~v~~g~~~~--------------~-----~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                       .+...+...| .++||.+..|..|.              .     .+.+|+|++  ++++|++++++.|++++++++.
T Consensus       302 -~~~~~~~~~L-~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~~~~  378 (382)
T TIGR03403       302 -VEGEAMLWDL-NKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQRLRA  378 (382)
T ss_pred             -CCHHHHHHhh-ccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence             1455666665 67799999876552              1     257999994  5899999999999999887654

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PRK07179 hypothetical protein; Provisional

Probab=99.96  E-value=7.2e-27  Score=218.93  Aligned_cols=320  Identities=15%  Similarity=0.103  Sum_probs=221.5

Q ss_pred             CCCCCCCcHHHHHHHHHHhcCC---C--CC-CCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh
Q 038416           20 GVSLLSDSTVAEDAVVDALRTA---H--YN-CYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL   93 (387)
Q Consensus        20 ~~~~~~~~~~v~~a~~~~~~~~---~--~~-~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l   93 (387)
                      .|.++..+|.+++++.+++..-   .  .. .+.......+|++.+++++        ..+.+++++|+++|+..++.++
T Consensus        63 ~YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~--------g~~~~~~~~sG~~An~~~l~~l  134 (407)
T PRK07179         63 DYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFT--------GFESCLLCQSGWAANVGLLQTI  134 (407)
T ss_pred             CccCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHh--------CCCcEEEECCHHHHHHHHHHHh
Confidence            4568889999999999998641   0  01 1111124578888888887        2356788999999999999999


Q ss_pred             cCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCccccCCHHHHHH
Q 038416           94 ARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCGNVFSYQHLQK  172 (387)
Q Consensus        94 ~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~~~~  172 (387)
                      ..+||.|++..+.|.+....+.  ..|.++..++.       .|++++++++++ ++++|++++++||||.++|   +++
T Consensus       135 ~~~g~~v~~~~~~h~s~~~~~~--~~g~~~~~~~~-------~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~p---l~~  202 (407)
T PRK07179        135 ADPNTPVYIDFFAHMSLWEGVR--AAGAQAHPFRH-------NDVDHLRRQIERHGPGIIVVDSVYSTTGTIAP---LAD  202 (407)
T ss_pred             CCCCCEEEEECCcCHHHHHHHH--HCCCeEEEecC-------CCHHHHHHHHHhcCCeEEEECCCCCCCCcccc---HHH
Confidence            9999999999999988877777  77877665532       488999998876 4778888899999999988   778


Q ss_pred             HHHHHHhcCcEEeecccccccccCCCCCccccccCCCcc-EEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHH
Q 038416          173 IARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVP-VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIK  251 (387)
Q Consensus       173 l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~  251 (387)
                      |.++|+++|+++|+||+|+...++..+...+..++.... .+++.|++|+++   .|+|++++++        ++++.+.
T Consensus       203 I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g---~~~G~l~~~~--------~~~~~~~  271 (407)
T PRK07179        203 IVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFA---GRAGIITCPR--------ELAEYVP  271 (407)
T ss_pred             HHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhh---ccCeEEEeCH--------HHHHHHH
Confidence            899999999999999999854332222111222222112 488899999975   3689999865        5666665


Q ss_pred             hhhh---ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCC
Q 038416          252 GCLN---AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDI  328 (387)
Q Consensus       252 ~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  328 (387)
                      ....   ++.+.++....++.++++..  .......++++++++++++.|+++ ++. +.  ..+.++++.++..     
T Consensus       272 ~~~~~~~~~~t~~~~~~aa~~aal~~~--~~~~~~~~~l~~~~~~l~~~L~~~-g~~-v~--~~~~i~~l~~~~~-----  340 (407)
T PRK07179        272 FVSYPAIFSSTLLPHEIAGLEATLEVI--ESADDRRARLHANARFLREGLSEL-GYN-IR--SESQIIALETGSE-----  340 (407)
T ss_pred             HhCcCeeeCCCCCHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHc-CCC-CC--CCCCEEEEEeCCH-----
Confidence            4321   23333444444444444432  223456788889999999999988 676 32  2355666665421     


Q ss_pred             CcHHHHHHHHHHhcCeEEE----cCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHh
Q 038416          329 GDDLEFCLKLAKEESVIIL----PGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       329 ~~~~~~~~~ll~~~gi~v~----~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                       ...+.+...+.++||.+.    |+. ....+++||+++  .++++++++++.|++++++.
T Consensus       341 -~~~~~~~~~L~~~GI~~~~~~~p~~-~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~~  399 (407)
T PRK07179        341 -RNTEVLRDALEERNVFGAVFCAPAT-PKNRNLIRLSLNADLTASDLDRVLEVCREARDEV  399 (407)
T ss_pred             -HHHHHHHHHHHHCCceEeeecCCCC-CCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhh
Confidence             122334444567799743    211 112478999995  58999999999999988764

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.96  E-value=6.5e-27  Score=215.47  Aligned_cols=316  Identities=16%  Similarity=0.116  Sum_probs=216.6

Q ss_pred             CCCCcHHHHHHHHHHhcCCCC--CCC----CCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCC
Q 038416           23 LLSDSTVAEDAVVDALRTAHY--NCY----SPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARP   96 (387)
Q Consensus        23 ~~~~~~~v~~a~~~~~~~~~~--~~y----~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~   96 (387)
                      +.+.+|.+.+++++.+.+...  ..|    +......++++.++++++      .  ++.++++++++++..++.+++++
T Consensus        13 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~------~--~~~iv~~sg~~a~~~~~~~~~~~   84 (349)
T cd06454          13 GLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHG------K--EAALVFSSGYAANDGVLSTLAGK   84 (349)
T ss_pred             ccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhC------C--CCEEEeccHHHHHHHHHHHhcCC
Confidence            566779999999999975211  112    122334667777777662      2  24566666778998888888899


Q ss_pred             CCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc-----CceEEEEeCCCCCccccCCHHHHH
Q 038416           97 GANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE-----NTVAIVIINPGNPCGNVFSYQHLQ  171 (387)
Q Consensus        97 g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~v~l~~p~nptG~~~~~~~~~  171 (387)
                      ||.|+++.|+|.++...+.  ..|.++..++.       .|++.+++.+++     +++++++++++||||...+   ++
T Consensus        85 gd~Vl~~~~~~~~~~~~~~--~~g~~~~~~~~-------~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~---~~  152 (349)
T cd06454          85 GDLIISDSLNHASIIDGIR--LSGAKKRIFKH-------NDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAP---LP  152 (349)
T ss_pred             CCEEEEehhhhHHHHHHHH--HcCCceEEecC-------CCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccC---HH
Confidence            9999999999999888888  88988877642       366777877753     4677788899999999866   78


Q ss_pred             HHHHHHHhcCcEEeecccccccccCCCC-CccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHH
Q 038416          172 KIARTARNLGIIVIADEVYNHLAFGSTP-YVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSI  250 (387)
Q Consensus       172 ~l~~~~~~~~~~li~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~  250 (387)
                      +|+++|+++|+++|+|++|+...+.... ..........+..++++|++|.++.+|   ||++.++        ++.+.+
T Consensus       153 ~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g---G~i~~~~--------~~~~~~  221 (349)
T cd06454         153 ELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAVG---GYIAGSK--------ELIDYL  221 (349)
T ss_pred             HHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcccC---CEEECCH--------HHHHHH
Confidence            8899999999999999999743222111 000111123345799999999987755   8888765        566666


Q ss_pred             Hhhhh---ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccC
Q 038416          251 KGCLN---AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLED  327 (387)
Q Consensus       251 ~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  327 (387)
                      .....   ...+.++..+.++...++...+  .....+++.++++.+.+.|+++ ++... .+.++.+.++.++..    
T Consensus       222 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~~~~~~~~~~~~~~----  293 (349)
T cd06454         222 RSYARGFIFSTSLPPAVAAAALAALEVLQG--GPERRERLQENVRYLRRGLKEL-GFPVG-GSPSHIIPPLIGDDP----  293 (349)
T ss_pred             HHhchhhhccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhc-CCccc-CCCCCcEEEEeCCCh----
Confidence            54321   2234556666666666654322  3556788888899999998887 66633 333344444433311    


Q ss_pred             CCcHHHHHHHHHHhcCeEEEcCCccC---CCCeEEEEee--CChHhHHHHHHHHHHH
Q 038416          328 IGDDLEFCLKLAKEESVIILPGRTVG---MKNWLRIAFA--AEPATLEDGLERIKAF  379 (387)
Q Consensus       328 ~~~~~~~~~~ll~~~gi~v~~g~~~~---~~~~~Ri~~~--~~~e~~~~~~~~l~~~  379 (387)
                       .+..++...++++ ||.+.++....   ..+++|++++  .+++++++++++|+++
T Consensus       294 -~~~~~~~~~L~~~-gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  348 (349)
T cd06454         294 -AKAVAFSDALLER-GIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV  348 (349)
T ss_pred             -HHHHHHHHHHHhC-CceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence             1345677776554 99998753321   1478999996  5899999999999764

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.96  E-value=1e-26  Score=216.05  Aligned_cols=326  Identities=11%  Similarity=0.061  Sum_probs=222.4

Q ss_pred             CCCCcHHHHHHHHHHhcCCC-------CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC
Q 038416           23 LLSDSTVAEDAVVDALRTAH-------YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR   95 (387)
Q Consensus        23 ~~~~~~~v~~a~~~~~~~~~-------~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~   95 (387)
                      .-|+++.+.+++.+......       ...+.......++|+.+|++++        .+++++++|+++++..++.++++
T Consensus        29 ~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g--------~~~~~~~~g~t~a~~~al~~l~~  100 (387)
T PRK09331         29 GGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLG--------MDEARVTHGAREGKFAVMHSLCK  100 (387)
T ss_pred             CCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHhcC
Confidence            35789999999999885321       0111112346889999999983        25788899999999999999999


Q ss_pred             CCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc-------CceEEEEeCCCCCccccCCHH
Q 038416           96 PGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE-------NTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        96 ~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~v~l~~p~nptG~~~~~~  168 (387)
                      +||+|+++.++|++....++  ..|.+++.++...+.++.+|++.+++++++       ++++|++++|+|++|...+  
T Consensus       101 ~gd~Vlv~~~~h~s~~~~~~--~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~--  176 (387)
T PRK09331        101 KGDYVVLDGLAHYTSYVAAE--RAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLAD--  176 (387)
T ss_pred             CCCEEEECCCchHHHHHHHH--HcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCccccc--
Confidence            99999999999988877788  899999999874334567899999998863       6889999999999999866  


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD  248 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~  248 (387)
                       +++|+++|+++|+++|+|++|+...    .+.+...+..   .+++.|++|+++ .+.++|++++++        ++++
T Consensus       177 -l~~I~~la~~~g~~livD~a~~~g~----~~~~~~~~g~---D~~~~s~~K~l~-~~~~~G~l~~~~--------~~i~  239 (387)
T PRK09331        177 -AKKVAKVAHEYGIPFLLNGAYTVGR----MPVDGKKLGA---DFIVGSGHKSMA-ASAPSGVLATTE--------EYAD  239 (387)
T ss_pred             -HHHHHHHHHHcCCEEEEECCcccCC----cCCCHHHcCC---CEEEeeCccccc-CCCCEEEEEECH--------HHHh
Confidence             8899999999999999999998521    1112222222   388999999975 445899999875        5666


Q ss_pred             HHHhhhh---------ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC-CCceEEEEE
Q 038416          249 SIKGCLN---------AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVK-PQGAMFVMV  318 (387)
Q Consensus       249 ~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~g~~~~~  318 (387)
                      .+.....         +..+..+....++...+... .+.. +..++..++++++++.|++++|+.+... +....++.+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~-~~~~-~~~~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~i~~~  317 (387)
T PRK09331        240 KVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHV-VERV-KRWDEEVKKARWFVDELEKIEGFKQLGEKPRNHDLMKF  317 (387)
T ss_pred             hcccccCCCcccceeeeceecCchHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHhcCCCEEEeccCcCcCCeEEE
Confidence            6544311         11112211222222223221 1212 2445556777888999999988874421 233445445


Q ss_pred             ecCcccc---cCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe-eCChHhHHHHHHHHHHHHHHh
Q 038416          319 KLNVSML---EDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF-AAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       319 ~~~~~~~---~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~-~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      ..+....   .......++...| +++||...+..   ....+|+.. +.++++++++++.|+++++++
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~L-~~~gI~~~~~~---~~~i~ri~~~g~t~~di~~l~~aL~~i~~~~  382 (387)
T PRK09331        318 ETPSFDEIAKKHKRRGFFLYEEL-KKRGIHGIKPG---ATKEFKLSTYGLTWEQVEYVADAFKEIAEKY  382 (387)
T ss_pred             eCCchhHHhhhccccchhHHHHH-HHcCceEEccC---CceEEEEEeccCCHHHHHHHHHHHHHHHHhc
Confidence            5442100   0001223466666 56799843321   256678887 678999999999999988764

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.96  E-value=5.8e-27  Score=219.30  Aligned_cols=323  Identities=15%  Similarity=0.118  Sum_probs=219.4

Q ss_pred             CCCCCCCcHHHHHHHHHHhcCCCCC------CCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh
Q 038416           20 GVSLLSDSTVAEDAVVDALRTAHYN------CYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL   93 (387)
Q Consensus        20 ~~~~~~~~~~v~~a~~~~~~~~~~~------~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l   93 (387)
                      .|.++..+|.+++++.+++..-...      .|+......+|++.++++++        .++.++++++++|+..++..+
T Consensus        54 ~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g--------~~~~l~~~sG~~an~~ai~~l  125 (402)
T TIGR01821        54 DYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHG--------KESALVFTSGYVANDATLATL  125 (402)
T ss_pred             CcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhC--------CCeEEEECchHHHHHHHHHHh
Confidence            3558899999999999998752111      11222235678888888872        245666677788999999887


Q ss_pred             cC--CCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc---c-CceEEEEeCCCCCccccCCH
Q 038416           94 AR--PGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD---E-NTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        94 ~~--~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~---~-~~~~v~l~~p~nptG~~~~~  167 (387)
                      ..  +++.|+.....|......+.  ..|.++..++.       .|++.+++.++   + ++++|++++|+||+|.+.| 
T Consensus       126 ~~~~~~~~v~~~~~~h~s~~~~~~--~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~-  195 (402)
T TIGR01821       126 AKIIPGCVIFSDELNHASMIEGIR--HSGAEKFIFRH-------NDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIAP-  195 (402)
T ss_pred             hCCCCCCEEEEcchHhHHHHHHHH--HcCCeEEEECC-------CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC-
Confidence            64  66767666666766666666  77777655542       25566666554   2 5788999999999999987 


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                        +++|.++|+++|+++|+||+|+...++..+.......+. +...++++|+||+|+++|   ||+++++        ++
T Consensus       196 --l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G---G~i~~~~--------~~  262 (402)
T TIGR01821       196 --IEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVVG---GYIAASR--------KL  262 (402)
T ss_pred             --HHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccCC---ceeecCH--------HH
Confidence              888899999999999999999843332211111111111 123578899999998877   8988765        67


Q ss_pred             HHHHHhhhh---ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcc
Q 038416          247 VDSIKGCLN---AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVS  323 (387)
Q Consensus       247 ~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~  323 (387)
                      ++.++....   ++.+.++..+.++.++|+...+.  ....+++.++++++.+.|+++ ++... .+ .+.++.+.++..
T Consensus       263 ~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~--~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~-~~~i~~i~~~~~  337 (402)
T TIGR01821       263 IDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKES--QDLRRAHQENVKRLKNLLEAL-GIPVI-PN-PSHIVPVIIGDA  337 (402)
T ss_pred             HHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHHHHc-CCCcC-CC-CCCEEEEEeCCH
Confidence            777765432   23456666777777777643221  344556677888899999887 66633 33 355555555321


Q ss_pred             cccCCCcHHHHHHHHHHhcCeEEEcCCccCC---CCeEEEEee--CChHhHHHHHHHHHHHHHHh
Q 038416          324 MLEDIGDDLEFCLKLAKEESVIILPGRTVGM---KNWLRIAFA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       324 ~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                           ....++...+++++||.+.+......   ..++||++.  .++++++++++.|+++++++
T Consensus       338 -----~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~~~  397 (402)
T TIGR01821       338 -----ALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLVWDRL  397 (402)
T ss_pred             -----HHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence                 12346767776677999987543322   368999994  68999999999999988764

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.96  E-value=2.9e-27  Score=221.15  Aligned_cols=331  Identities=13%  Similarity=0.103  Sum_probs=225.0

Q ss_pred             cccCCCCCCCCCCCCCCC-cHHHHHHHHHHhcCCC--CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHH
Q 038416            9 TRHSPWPRRPLGVSLLSD-STVAEDAVVDALRTAH--YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQA   85 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~-~~~v~~a~~~~~~~~~--~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a   85 (387)
                      .++++.-|.+..  .++. +|.+.+++++++....  ...|... ...+|.+.+++++    + ...++++++++|+++|
T Consensus        44 ~~lD~~s~~~~~--~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~-~~~~la~~l~~~~----~-~~~~~~v~~~~sgsea  115 (398)
T PRK03244         44 EYLDLLGGIAVN--ALGHAHPAVVEAVTRQLATLGHVSNLFATE-PQIALAERLVELL----G-APEGGRVFFCNSGAEA  115 (398)
T ss_pred             EEEECCcCHhhc--cCCCCCHHHHHHHHHHHHhccCccCccCCH-HHHHHHHHHHHhC----C-CCCCCEEEEeCchHHH
Confidence            345554443322  2343 7999999999988521  1234432 1234555555443    3 1134799999999999


Q ss_pred             HHHHHHhhcCCC-CeEEEcCCCCcchHHHhhccCCCce------------eeeeccCCCCCccCChhhHHHhhccCceEE
Q 038416           86 IEISLSVLARPG-ANILIPRPGYPLYEIHAAGSNNNLE------------ARHYDLLPEKRWEVDLDGVEALADENTVAI  152 (387)
Q Consensus        86 ~~~~~~~l~~~g-~~vl~~~p~~~~~~~~~~~~~~g~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v  152 (387)
                      +..+++.+..+| +.|+..+++|+++..... +..|..            +..+|.       .|++++++.+.+++++|
T Consensus       116 ~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~~~~~~~av  187 (398)
T PRK03244        116 NEAAFKLARLTGRTKIVAAEGGFHGRTMGAL-ALTGQPAKRAPFEPLPGGVEHVPY-------GDVDALAAAVDDDTAAV  187 (398)
T ss_pred             HHHHHHHHHHHCCCeEEEECCCcCCccHHHH-hccCCcccccCCCCCCCCceEeCC-------CCHHHHHHhhcCCeEEE
Confidence            999999876666 578888889987754333 012211            111111       27889999887778888


Q ss_pred             EEeCCCCCccccCCHHH-HHHHHHHHHhcCcEEeecccccccccCCCCCc-cccccCCCccEEEEecCcccccccccceE
Q 038416          153 VIINPGNPCGNVFSYQH-LQKIARTARNLGIIVIADEVYNHLAFGSTPYV-PMGVFGSIVPVITLGSISKRWIVPGWRLG  230 (387)
Q Consensus       153 ~l~~p~nptG~~~~~~~-~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~s~sK~~~~~g~r~G  230 (387)
                      +++.++||+|..+|+++ +++|.++|++||+++|+||+|+++...|..+. ......++     +.++||+++ +|+|+|
T Consensus       188 iiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pD-----i~t~sK~l~-~G~~ig  261 (398)
T PRK03244        188 FLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPD-----VVTLAKGLG-GGLPIG  261 (398)
T ss_pred             EEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCCC-----EEEEchhhh-CCcccE
Confidence            88888999999987655 99999999999999999999998776654321 11222222     347899987 889999


Q ss_pred             EEEeeCCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-C
Q 038416          231 WLVTSDPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCP-V  308 (387)
Q Consensus       231 ~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~  308 (387)
                      ++++++        ++++.+.... ..+++.+++.+.++.+.|+...+.   +..+++.++.+.+++.|+++ +...+ .
T Consensus       262 ~~~~~~--------~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~---~~~~~~~~~~~~l~~~L~~~-~~~~~~~  329 (398)
T PRK03244        262 ACLAFG--------PAADLLTPGLHGSTFGGNPVACAAALAVLDTIASE---GLLENAERLGEQLRAGIEAL-GHPLVDH  329 (398)
T ss_pred             EEEEcH--------HHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhc-CCCceee
Confidence            999976        6777665432 345678888999988887743222   34456666677788888875 22211 1


Q ss_pred             CCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHhh
Q 038416          309 KPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       309 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      ....|.++|+.++..      ....+...+ .++||.+.+..    .+++|++++  .+++++++++++|++++++..
T Consensus       330 v~g~g~~~~i~~~~~------~~~~~~~~l-~~~Gv~~~~~~----~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~~~  396 (398)
T PRK03244        330 VRGRGLLLGIVLTAP------VAKAVEAAA-REAGFLVNAVA----PDVIRLAPPLIITDAQVDAFVAALPAILDAAA  396 (398)
T ss_pred             EeeccEEEEEEEecc------HHHHHHHHH-HHCCeEEeecC----CCEEEEECCCcCCHHHHHHHHHHHHHHHHhcc
Confidence            234688889888531      234555555 56799998742    478999984  589999999999999998754

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.96  E-value=5e-27  Score=218.35  Aligned_cols=328  Identities=15%  Similarity=0.077  Sum_probs=228.4

Q ss_pred             CCCCcHHHHHHHHHHhcCCC----CCCCCC----CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc
Q 038416           23 LLSDSTVAEDAVVDALRTAH----YNCYSP----TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA   94 (387)
Q Consensus        23 ~~~~~~~v~~a~~~~~~~~~----~~~y~~----~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~   94 (387)
                      .+|+|+.+.+++.+.++...    ...|+.    .....++|+.++++++.     ...++|++|+|+++++..++.+++
T Consensus         9 ~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~~~~v~~~~g~t~al~~~~~~~~   83 (376)
T TIGR01977         9 TYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNA-----PSSAHVVFTNNATTALNIALKGLL   83 (376)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCc-----CCCCeEEEeCCHHHHHHHHHHhcc
Confidence            35788999999998877531    112322    13456788888888842     133589999999999999999998


Q ss_pred             CCCCeEEEcCCCCcchH----HHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHH
Q 038416           95 RPGANILIPRPGYPLYE----IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHL  170 (387)
Q Consensus        95 ~~g~~vl~~~p~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~  170 (387)
                      ++||+|++..++|+++.    ...+  ..|.++..++.+.  ++.+|+++++++++++++++++++|+||||..++   +
T Consensus        84 ~~gd~vl~~~~~~~~~~~~~~~~~~--~~g~~~~~v~~~~--~~~~d~~~l~~~~~~~~~~v~~~~~~n~tG~~~~---~  156 (376)
T TIGR01977        84 KEGDHVITTPMEHNSVARPLECLKE--QIGVEITIVKCDN--EGLISPERIKRAIKTNTKLIVVSHASNVTGTILP---I  156 (376)
T ss_pred             CCCCEEEECcchhhHHHHHHHHHHH--HcCcEEEEEecCC--CCCcCHHHHHHhcCCCCeEEEEECCCCCccccCC---H
Confidence            99999999999998754    3445  5688998888753  4568999999999889999999999999999998   6


Q ss_pred             HHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH---
Q 038416          171 QKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV---  247 (387)
Q Consensus       171 ~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~---  247 (387)
                      ++|.++|+++|+++|+|++++...    ....+.....   .+++.|.+|+++.|. .+|.++.++.....  +...   
T Consensus       157 ~~i~~l~~~~~~~livD~a~~~g~----~~~~~~~~~~---D~~~~s~~K~l~~p~-g~g~l~~~~~~~~~--~~~~~~~  226 (376)
T TIGR01977       157 EEIGELAQENGIFFILDAAQTAGV----IPIDMTELAI---DMLAFTGHKGLLGPQ-GTGGLYIREGIKLK--PLKSGGT  226 (376)
T ss_pred             HHHHHHHHHcCCEEEEEhhhccCc----cCCCchhcCC---CEEEecccccccCCC-CceEEEEcCCcCcC--ceecCCC
Confidence            778889999999999999998522    1112222222   388899999865332 26777666532110  0000   


Q ss_pred             -------HHHHh--hhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC---ceEE
Q 038416          248 -------DSIKG--CLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ---GAMF  315 (387)
Q Consensus       248 -------~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~g~~  315 (387)
                             +....  .+...++++.....++..+++...+...+...++...+++.+.+.|++++++.+.....   .+..
T Consensus       227 ~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~  306 (376)
T TIGR01977       227 GSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGV  306 (376)
T ss_pred             ccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCe
Confidence                   00000  00012355566666676677655555667778888899999999998887777442211   2345


Q ss_pred             EEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccC----------CCCeEEEEee--CChHhHHHHHHHHHH
Q 038416          316 VMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG----------MKNWLRIAFA--AEPATLEDGLERIKA  378 (387)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~----------~~~~~Ri~~~--~~~e~~~~~~~~l~~  378 (387)
                      +++.++.      .+..++...|.+++||.+.+|..+.          ..+.+|++++  .++++++.+++.|++
T Consensus       307 v~~~~~~------~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~  375 (376)
T TIGR01977       307 VSFTVEG------IDSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE  375 (376)
T ss_pred             EEEEECC------CCHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence            5555542      1455666666555599999887553          2478999994  589999999999875

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.96  E-value=7.7e-27  Score=215.52  Aligned_cols=317  Identities=18%  Similarity=0.184  Sum_probs=220.9

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCC--CEEEcCChHHHHHHHHHhhcCCCCeEE
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE--DVYLTLGCSQAIEISLSVLARPGANIL  101 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~--~i~~~~g~~~a~~~~~~~l~~~g~~vl  101 (387)
                      ..+++.+++++...... ....|.  ....++|+.++++++      ++++  .|++++|+++++..++.+++.+||+++
T Consensus         8 ~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~la~~~~------~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~vi   78 (355)
T TIGR03301         8 LSTSATVRDAMLVDWCH-WDSEFN--DVTDQVRDRLLALAG------GDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLL   78 (355)
T ss_pred             CCCCHHHHHHhhhhccC-CCHHHH--HHHHHHHHHHHHHhc------CCCCCcEEEEeCCcHHHHHHHHHhccCCCCeEE
Confidence            35778888888773221 111222  345677777777773      3333  678899999999999999998888877


Q ss_pred             EcCCCCcc--hHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc--CceEEEEeCCCCCccccCCHHHHHHHHHHH
Q 038416          102 IPRPGYPL--YEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE--NTVAIVIINPGNPCGNVFSYQHLQKIARTA  177 (387)
Q Consensus       102 ~~~p~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~v~l~~p~nptG~~~~~~~~~~l~~~~  177 (387)
                      +..+.+++  +...++  ..|.++..++++  .++.+|+++++++++.  +.+.+++++++||||...+   +++|.++|
T Consensus        79 ~~~~~~~~~~~~~~a~--~~g~~~~~i~~~--~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~---~~~i~~l~  151 (355)
T TIGR03301        79 VLINGAYGERLAKICE--YLGIPHTDLNFS--EYEPPDLNRIEEALAADPDITHVATVHHETTTGILNP---LEAIAKVA  151 (355)
T ss_pred             EECCCchhhHHHHHHH--HcCCceEEEecC--CCCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhH---HHHHHHHH
Confidence            76666554  356667  789999988874  3457899999998864  3457778899999999976   78999999


Q ss_pred             HhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccc-cccccceEEEEeeCCCCcccchhHHHHHHhh---
Q 038416          178 RNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRW-IVPGWRLGWLVTSDPNGILQNSGFVDSIKGC---  253 (387)
Q Consensus       178 ~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~-~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~---  253 (387)
                      +++++++|+|++++..   . ...++..+   +..+++.|++|++ +++|  +||+++++        +.++.+...   
T Consensus       152 ~~~~~~livD~~~s~g---~-~~~~~~~~---~~d~~~~s~~K~l~~~~G--~g~~~~~~--------~~~~~~~~~~~~  214 (355)
T TIGR03301       152 RSHGAVLIVDAMSSFG---A-IPIDIEEL---DVDALIASANKCLEGVPG--FGFVIARR--------DLLEASAGNARS  214 (355)
T ss_pred             HHcCCEEEEEeccccC---C-cccchhhc---CccEEEecCCcccccCCc--eeEEEECH--------HHHHHhhCCCCC
Confidence            9999999999987642   1 12223333   2348889999985 4556  69999875        555554410   


Q ss_pred             ---------------hhccCCcchHHHHHHHHHhhhccHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC--CceEE
Q 038416          254 ---------------LNAASHPVTFIQAAVPRIVDETNEA-FFAKIIGLLKETADICYERIKEIPCITCPVKP--QGAMF  315 (387)
Q Consensus       254 ---------------~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~g~~  315 (387)
                                     ....++++...+.++..++....+. ++++..++++++++++.+.|+++ ++..+..+  ..+.+
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~-g~~~~~~~~~~~~~~  293 (355)
T TIGR03301       215 LYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRAL-GFQPLLPERWQSPII  293 (355)
T ss_pred             ceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc-CCeeecCCCCCCCcE
Confidence                           1123456777777777777654333 37778888899999999999887 66633222  23445


Q ss_pred             EEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHH
Q 038416          316 VMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAF  379 (387)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~  379 (387)
                      +++.++...  . .+..++...+ .++||.+.+|..+.. +++||++.  .++++++++++.|+++
T Consensus       294 ~~~~~~~~~--~-~~~~~~~~~l-~~~gi~i~~~~~~~~-~~iRis~~~~~~~~~i~~~~~~l~~~  354 (355)
T TIGR03301       294 VSFLYPDDP--D-FDFDDFYQEL-KERGFVIYPGKLTLA-DTFRIGTIGEIDAADIERLLEAIKDA  354 (355)
T ss_pred             EEEECCCCC--c-chHHHHHHHH-HHCCEEEECCccccc-cEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            677765310  0 1234555555 667999999865543 79999983  4899999999999865

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.96  E-value=9.5e-27  Score=215.18  Aligned_cols=315  Identities=16%  Similarity=0.143  Sum_probs=219.9

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCC--CCCcHHHHHHHHHHHhhcCCCCCCC--CCEEEcCChHHHHHHHHHhhcCCCCeE
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSP--TLGVPSARRGIADYLNRDLPYKLSP--EDVYLTLGCSQAIEISLSVLARPGANI  100 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~--~~~~~~lr~~ia~~~~~~~~~~~~~--~~i~~~~g~~~a~~~~~~~l~~~g~~v  100 (387)
                      ..++.+.+++....     .++.+  ..-..++|+.+++++      ++++  +.|++|+|++++++.++.++..+||.+
T Consensus        13 ~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~r~~la~l~------~~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~v   81 (363)
T TIGR02326        13 TTSRTVKEAMLFDW-----CTWDSDYNIVVEQIRQQLLALA------TAEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKL   81 (363)
T ss_pred             CCCHHHHHHhCCCC-----CCCChHHHHHHHHHHHHHHHHh------CCCCCceEEEEcCCCHHHHHHHHHhcCCCCCeE
Confidence            45555555544432     12322  123455677777776      3444  479999999999999999998888888


Q ss_pred             EEcCCCCcch--HHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc--CceEEEEeCCCCCccccCCHHHHHHHHHH
Q 038416          101 LIPRPGYPLY--EIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE--NTVAIVIINPGNPCGNVFSYQHLQKIART  176 (387)
Q Consensus       101 l~~~p~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~v~l~~p~nptG~~~~~~~~~~l~~~  176 (387)
                      ++..+++++.  ...++  ..|.+++.++++  .+..+|++.++++++.  +++++.+++++||||+.+|   +++|.++
T Consensus        82 lv~~~~~~~~~~~~~a~--~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~---i~~I~~l  154 (363)
T TIGR02326        82 LVVINGAYGARIVQIAE--YLGIPHHVVDTG--EVEPPDVVEVEAILAADPAITHIALVHCETTTGILNP---IEAVAKL  154 (363)
T ss_pred             EEEeCChhhHHHHHHHH--HcCCceEEEeCC--CCCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCc---HHHHHHH
Confidence            7776666554  35667  789999988874  3457899999998875  3467888999999999988   7899999


Q ss_pred             HHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccc-cccccceEEEEeeCCCCcccchhHHHHHHh---
Q 038416          177 ARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRW-IVPGWRLGWLVTSDPNGILQNSGFVDSIKG---  252 (387)
Q Consensus       177 ~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~-~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~---  252 (387)
                      |+++|+++|+|++++.    |..+.++..++.   .++++|++|++ +.+|  +|++++++        +.++.+..   
T Consensus       155 ~~~~g~~livD~~~~~----g~~~~~~~~~~~---D~~~~s~~K~l~~p~G--~G~l~~~~--------~~~~~~~~~~~  217 (363)
T TIGR02326       155 AHRHGKVTIVDAMSSF----GGIPIDIAELHI---DYLISSANKCIQGVPG--FGFVIARQ--------AELAACKGNAR  217 (363)
T ss_pred             HHHcCCEEEEEccccc----cCcccchhhcCc---cEEEecCccccccCCc--ceEEEECH--------HHHHHhhcCCC
Confidence            9999999999998873    222233444433   38889999986 4456  79999875        34333211   


Q ss_pred             ------------h----hhccCCcchHHHHHHHHHhhhccHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC--Cce
Q 038416          253 ------------C----LNAASHPVTFIQAAVPRIVDETNEA-FFAKIIGLLKETADICYERIKEIPCITCPVKP--QGA  313 (387)
Q Consensus       253 ------------~----~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~g  313 (387)
                                  .    ....++++.+.+.++.++++...+. .++++.+++.++++++++.|+++ ++..+..+  ..+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~  296 (363)
T TIGR02326       218 SLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRAL-GFEPLLDDEIQSP  296 (363)
T ss_pred             ceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCc
Confidence                        0    0122456777888877777654333 47778899999999999999887 66644222  234


Q ss_pred             EEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe-e-CChHhHHHHHHHHHHHH
Q 038416          314 MFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF-A-AEPATLEDGLERIKAFC  380 (387)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~-~-~~~e~~~~~~~~l~~~~  380 (387)
                      ...++.++...  . .+...+.+.+ +++||.+.+|..+ ..+++||++ + .+.++++.+++.|++++
T Consensus       297 ~~~~~~~~~~~--~-~~~~~v~~~L-~~~gi~v~~g~~~-~~~~iRi~~~~~~~~edv~~~l~~l~~~l  360 (363)
T TIGR02326       297 IITSFYSPEDP--D-YRFADFYQRL-KEQGFVIYPGKVS-QVDCFRIGNIGEVDAADITRLLTAIGKAM  360 (363)
T ss_pred             eEEEEECCCCC--C-CCHHHHHHHH-HHCCEEEECCcCC-CCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            44566665310  0 1334565655 6679999998765 357899997 3 58999999999998875

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.96  E-value=7.2e-27  Score=216.87  Aligned_cols=317  Identities=15%  Similarity=0.142  Sum_probs=218.7

Q ss_pred             CCCCCCCCCCcHHHHHHHHHH-----hcC-C-CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHH
Q 038416           17 RPLGVSLLSDSTVAEDAVVDA-----LRT-A-HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEIS   89 (387)
Q Consensus        17 ~~~~~~~~~~~~~v~~a~~~~-----~~~-~-~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~   89 (387)
                      .+...|+++++..+.++..+.     .+. + .+..| +..+..+|++.++++++        .+++++++|++.|+..+
T Consensus        25 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~-~~p~~~~Le~~iA~~~g--------~~~~l~~~sG~~Ai~~a   95 (400)
T PRK06234         25 GSLATPIYQTSTFIFDSAEQGGRRFAGEESGYIYSRL-GNPTSTEVENKLALLEG--------GEAAVVAASGMGAISSS   95 (400)
T ss_pred             CCccCCcccccceecCChHHHHHhhccCcCCCcccCC-CCccHHHHHHHHHHHhC--------CCcEEEEcCHHHHHHHH
Confidence            345667888888887776552     111 1 22233 34678999999999983        24788899999999999


Q ss_pred             HHhhcCCCCeEEEcCCCCcchHHH----hhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccC
Q 038416           90 LSVLARPGANILIPRPGYPLYEIH----AAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVF  165 (387)
Q Consensus        90 ~~~l~~~g~~vl~~~p~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~  165 (387)
                      +.+++++||+|+++.|.|..+...    +.  ..|+++..++.       .|++++++++++++++|++++|+||||.+.
T Consensus        96 l~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~--~~G~~v~~vd~-------~d~e~l~~~i~~~tklI~iesP~NPtG~v~  166 (400)
T PRK06234         96 LWSALKAGDHVVASDTLYGCTFALLNHGLT--RYGVEVTFVDT-------SNLEEVRNALKANTKVVYLETPANPTLKVT  166 (400)
T ss_pred             HHHHhCCCCEEEEecCccchHHHHHHHHHh--hCCeEEEEECC-------CCHHHHHHHhccCCeEEEEECCCCCCCCcC
Confidence            999999999999999999765433    45  68888888864       278999999998999999999999999998


Q ss_pred             CHHHHHHHHHHHHhc--CcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccce-EEEEeeCCCCccc
Q 038416          166 SYQHLQKIARTARNL--GIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRL-GWLVTSDPNGILQ  242 (387)
Q Consensus       166 ~~~~~~~l~~~~~~~--~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~-G~i~~~~~~~~~~  242 (387)
                      +   +++|.++|+++  |+++|+|++|+...+.    .++ ..   +..+++.|++|.++.+|.++ ||+++++      
T Consensus       167 d---l~~I~~la~~~~~~i~livDea~~~~~~~----~~l-~~---g~Divv~S~sK~l~g~g~~~gG~v~~~~------  229 (400)
T PRK06234        167 D---IKAISNIAHENNKECLVFVDNTFCTPYIQ----RPL-QL---GADVVVHSATKYLNGHGDVIAGFVVGKE------  229 (400)
T ss_pred             C---HHHHHHHHHhcCCCCEEEEECCCCchhcC----Cch-hh---CCcEEEeeccccccCCCCceeEEEEecH------
Confidence            7   78888888886  9999999999865432    122 12   23489999999998888765 9988865      


Q ss_pred             chhHHHHHHhh--h-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC--------
Q 038416          243 NSGFVDSIKGC--L-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ--------  311 (387)
Q Consensus       243 ~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------  311 (387)
                        ++++.++..  . ..+...+++..+.+...++.     +..+.++.+++++.+.+.|++.|.+..+..|.        
T Consensus       230 --~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~l~t-----l~~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~  302 (400)
T PRK06234        230 --EFINQVKLFGIKDMTGSVIGPFEAFLIIRGMKT-----LQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYE  302 (400)
T ss_pred             --HHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCc-----HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHH
Confidence              677776643  2 23445555555555444443     55677777788888888888876554343432        


Q ss_pred             --------ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccC----------------------C-CCeEEE
Q 038416          312 --------GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG----------------------M-KNWLRI  360 (387)
Q Consensus       312 --------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~----------------------~-~~~~Ri  360 (387)
                              .|.++.+.++..    ......+++.| +-.++.+.-|+...                      . ++.+|+
T Consensus       303 ~~~~~~~~~g~l~s~~l~~~----~~~~~~f~~~l-~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~  377 (400)
T PRK06234        303 LAKKQMSLPGAMISFELKGG----VEEGKVVMNNV-KLATLAVSLGDAETLIQHPASMTHSPYTAEERKEAGISDGLVRL  377 (400)
T ss_pred             HHHHhCCCCCceEEEEecCc----HHHHHHHHHhC-CcceEeccCCCCCceecCCccCCCCCCCHHHHHhcCCCCCeEEE
Confidence                    244555566421    01223444443 33343333332211                      0 357999


Q ss_pred             EeeCChHhHHHHHHHHHHHHHH
Q 038416          361 AFAAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       361 ~~~~~~e~~~~~~~~l~~~~~~  382 (387)
                      |++.  |+.+.+++.|.++++.
T Consensus       378 svGl--E~~~dl~~dl~~al~~  397 (400)
T PRK06234        378 SVGL--EDVDDIIADLKQALDL  397 (400)
T ss_pred             EeCC--CCHHHHHHHHHHHHHH
Confidence            9998  5677777777777765

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.96  E-value=1.8e-26  Score=216.51  Aligned_cols=322  Identities=16%  Similarity=0.106  Sum_probs=216.8

Q ss_pred             CCCCCCcHHHHHHHHHHhcCCCC------CCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc
Q 038416           21 VSLLSDSTVAEDAVVDALRTAHY------NCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA   94 (387)
Q Consensus        21 ~~~~~~~~~v~~a~~~~~~~~~~------~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~   94 (387)
                      |.+++.+|.+.+++.+++..-..      ..|.......+|++.+++++      + . ++.++.++|++++..++..+.
T Consensus        56 ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~------g-~-~~~~~~~sG~~an~~ai~~l~  127 (407)
T PRK09064         56 YLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLH------G-K-EAALVFTSGYVSNDATLSTLA  127 (407)
T ss_pred             CcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHh------C-C-CcEEEECcHHHHHHHHHHHHh
Confidence            45788999999999998865211      11223334677888888877      2 2 345555556778888777765


Q ss_pred             C--CCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc----cCceEEEEeCCCCCccccCCHH
Q 038416           95 R--PGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD----ENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        95 ~--~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      .  +++.|+.....|.+....+.  ..+.++..++.       .|++.+++.++    +++++|++++++|++|...+  
T Consensus       128 ~~~~~~~i~~~~~~h~s~~~~~~--~~~~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~--  196 (407)
T PRK09064        128 KLIPDCVIFSDELNHASMIEGIR--RSRCEKHIFRH-------NDVAHLEELLAAADPDRPKLIAFESVYSMDGDIAP--  196 (407)
T ss_pred             CCCCCCEEEEeCcchHHHHHHHH--HcCCcEEEECC-------CCHHHHHHHHHhccCCCCeEEEEeCCCCCCccccC--
Confidence            4  66666666666766666666  66776655543       25677777664    46789999999999999977  


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                       +++|.++|+++|+++|+||+|+...++..+.......+. +...++++||||+||++|   ||+++++        +++
T Consensus       197 -l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G---G~~~~~~--------~~~  264 (407)
T PRK09064        197 -IAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVMG---GYIAGSA--------ALV  264 (407)
T ss_pred             -HHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhccC---ceEecCH--------HHH
Confidence             888889999999999999999833232211111111111 233688899999998877   9988865        677


Q ss_pred             HHHHhhhh---ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccc
Q 038416          248 DSIKGCLN---AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSM  324 (387)
Q Consensus       248 ~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~  324 (387)
                      +.++....   ++.+.++..+.++.+.++...+  .....+++.++++++.+.|+++ ++.++ . ..+.++++.++.. 
T Consensus       265 ~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~-~~~~iv~i~~~~~-  338 (407)
T PRK09064        265 DAVRSYAPGFIFTTSLPPAIAAAALASIRHLKE--SNEERERHQERAAKLKAALDAA-GIPVM-P-NESHIVPVMVGDP-  338 (407)
T ss_pred             HHHHHhCccccccCcCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc-CCCCC-C-CCCCEEEEEeCCH-
Confidence            77765432   2334556666666666654222  1334577888899999999887 67633 3 3355666555421 


Q ss_pred             ccCCCcHHHHHHHHHHhcCeEEEcCCccCC---CCeEEEEee--CChHhHHHHHHHHHHHHHHh
Q 038416          325 LEDIGDDLEFCLKLAKEESVIILPGRTVGM---KNWLRIAFA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       325 ~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                          ....++...+++++||.+.+......   ..++||+++  ++++|++++++.|+++++++
T Consensus       339 ----~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~~~  398 (407)
T PRK09064        339 ----EKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWARL  398 (407)
T ss_pred             ----HHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence                12456777776677999987543322   368999994  58999999999999988764

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=99.96  E-value=1.6e-27  Score=194.88  Aligned_cols=288  Identities=18%  Similarity=0.321  Sum_probs=225.5

Q ss_pred             CCCCCCEEEcCChHHHHHHHHHhhcCCC-CeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc-
Q 038416           70 KLSPEDVYLTLGCSQAIEISLSVLARPG-ANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE-  147 (387)
Q Consensus        70 ~~~~~~i~~~~g~~~a~~~~~~~l~~~g-~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-  147 (387)
                      +..+++|.+.-|+-+.+..++++.+.|| ++|+.-.|+|.-|...+.  ..+++++.+|+++  +|.++.+++.+.++. 
T Consensus        83 pLt~dnic~GvGsDE~ID~iiR~~c~PGkeKIl~cPPtysMY~v~A~--iNd~eVvkvpl~p--dF~lnvdai~evl~~d  158 (375)
T KOG0633|consen   83 PLTSDNICVGVGSDELIDLIIRCVCDPGKEKILDCPPTYSMYVVDAA--INDAEVVKVPLNP--DFSLNVDAIAEVLELD  158 (375)
T ss_pred             CCCccceEEecCcHHHHHHHHhheecCCccceeecCCcceeEEEEee--cCCceEEEecCCC--CccccHHHHHHHHhcc
Confidence            6788999999999999999999999999 899999999998888888  8999999999865  678999999997754 


Q ss_pred             -CceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccc
Q 038416          148 -NTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPG  226 (387)
Q Consensus       148 -~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g  226 (387)
                       ..+++++++|+||||..+..+++.+|.+--.  |.++++||+|.+|.-.++...-+.   ...+++++.++||.||++|
T Consensus       159 s~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~--nglVVvDEAYidFsg~~S~~~lV~---kYpNLivlqTlSKsfGLAG  233 (375)
T KOG0633|consen  159 SKIKCIFLTSPGNPTGSIIKEDDILKILEMPD--NGLVVVDEAYIDFSGVESRMKLVK---KYPNLIVLQTLSKSFGLAG  233 (375)
T ss_pred             ccceEEEEcCCCCCCcccccHHHHHHHHhCCC--CcEEEEeeeeEeeccccccchHhH---hCCceeehhhhhhhcCcce
Confidence             5789999999999999999999999887433  789999999999763333223233   3357899999999999999


Q ss_pred             cceEEEEeeCCCCcccchhHHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 038416          227 WRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITC  306 (387)
Q Consensus       227 ~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  306 (387)
                      +|+|+...+.        .+++-+...+. ..+.+..+..++.+++.+..-..++...+.+.+.++++...|.++|.+..
T Consensus       234 iRvG~~~~~~--------~ia~iln~~Ka-PYNiS~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v~~~~~  304 (375)
T KOG0633|consen  234 IRVGYGAFPL--------SIAEILNRAKA-PYNISVAGSVAALAALSDSNGKKMEDVRDAIVRERERLFKELTEVPFLND  304 (375)
T ss_pred             eEeecccccH--------HHHHHHHhccC-CccccchhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcCccccC
Confidence            9999999875        56665655543 44555556666666777655567888889999999999999999887764


Q ss_pred             CCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEE-cCCccCCCCeEEEEeeCChHhHHHHHHHHHHH
Q 038416          307 PVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIIL-PGRTVGMKNWLRIAFAAEPATLEDGLERIKAF  379 (387)
Q Consensus       307 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~-~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~  379 (387)
                      ...+...+|+.+++....  . .-+..++.+++-+.||.++ .|..-+..+++||++++.+|. .-+++.|+++
T Consensus       305 ~~gg~daNFiLi~v~~~~--n-~~akkly~q~at~~gVvVRfrgse~~c~G~lRitvGt~Een-tvL~k~~K~~  374 (375)
T KOG0633|consen  305 YPGGSDANFILIEVTGGD--N-GMAKKLYKQDATKMGVVVRFRGSEEGCKGYLRITVGTPEEN-TVLMKCLKQF  374 (375)
T ss_pred             CCCcccccEEEEEEcCCC--c-HHHHHHHHHHHHhcceEEEEcCCccccceeEEEEcCCcccc-hHHHHHHHhh
Confidence            445667888888875320  1 1234667777888999988 455556789999999876543 3366666654

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.96  E-value=8.1e-27  Score=202.17  Aligned_cols=344  Identities=19%  Similarity=0.213  Sum_probs=257.1

Q ss_pred             cccccCCCCCCCCCC-CCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCC---CCCCCE--EEcC
Q 038416            7 QETRHSPWPRRPLGV-SLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYK---LSPEDV--YLTL   80 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~-~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~---~~~~~i--~~~~   80 (387)
                      .+.++|.++|--... -..|.-+.|.+|-+..........|-+..|.++.++.+++++   +|..   +..+++  +=|.
T Consensus        25 R~~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~~~k~Yl~i~G~~~f~~~~~~ll---FG~d~~~l~~~Rv~t~Qt~  101 (396)
T COG1448          25 RPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEKTKNYLPIEGLPEFLEAVQKLL---FGADSPALAEDRVATVQTL  101 (396)
T ss_pred             CcCeeeeeeeeeeCCCCCcchhHHHHHHHHHhhccccccccCCcCCcHHHHHHHHHHh---cCCCcHHHHhhhHhheecC
Confidence            346677777732111 124667777777777777776678989899999999999998   4422   334455  3478


Q ss_pred             ChHHHHHHHHHhhc--CCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc---CceEEEEe
Q 038416           81 GCSQAIEISLSVLA--RPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE---NTVAIVII  155 (387)
Q Consensus        81 g~~~a~~~~~~~l~--~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~v~l~  155 (387)
                      |||.|+..+...+.  .+..+|.+++|+|.++..++.  ..|+++..+|.....+..+|.+.+.+.+..   +..+++..
T Consensus       102 GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~--~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~vvLLH~  179 (396)
T COG1448         102 GGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFE--AAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHG  179 (396)
T ss_pred             CcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHH--hcCCceeeeeccccccccccHHHHHHHHHhCCCCCEEEEec
Confidence            99999999999985  455679999999999999999  999999999988777778999988877643   44444555


Q ss_pred             CCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCC-CccccccC-CCccEEEEecCcccccccccceEEEE
Q 038416          156 NPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTP-YVPMGVFG-SIVPVITLGSISKRWIVPGWRLGWLV  233 (387)
Q Consensus       156 ~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~-~~~~~~~~-~~~~~~~i~s~sK~~~~~g~r~G~i~  233 (387)
                      .+|||||.-++.+++++|+++.++.+.+.++|-+|++|.-+... .-.++.+- ....+++..|+||.||+-|-|+|.+.
T Consensus       180 CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnfgLYgERVGa~~  259 (396)
T COG1448         180 CCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNFGLYGERVGALS  259 (396)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhhhhhhhccceeE
Confidence            56999999999999999999999999999999999997643211 11111111 11237899999999999999999965


Q ss_pred             eeCCCCcccchhHHHHHH----hh-hhccCCcchHHHHHHHHHhhhcc-----HHHHHHHHHHHHHHHHHHHHHhhcC-C
Q 038416          234 TSDPNGILQNSGFVDSIK----GC-LNAASHPVTFIQAAVPRIVDETN-----EAFFAKIIGLLKETADICYERIKEI-P  302 (387)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~-~  302 (387)
                      .-..     +.+...++.    .. +...++|+..+...+..+|++.+     +..+..+++++.++|..+.+.|++. +
T Consensus       260 vva~-----~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~~~  334 (396)
T COG1448         260 VVAE-----DAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALKALGA  334 (396)
T ss_pred             EEeC-----CHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            4321     123333333    22 33456788888888998988754     3456778888999999999999883 2


Q ss_pred             --CCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe-eCChHhHHHHHHHHHHH
Q 038416          303 --CITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF-AAEPATLEDGLERIKAF  379 (387)
Q Consensus       303 --~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~-~~~~e~~~~~~~~l~~~  379 (387)
                        ++..+ ..+.|+|.+..+.          .+.+..|.+++||.+..++        |||+ +.++.+++.+.+.|.++
T Consensus       335 ~~~f~~i-~~Q~GMFsy~Gls----------~~QV~rLree~~IY~v~sG--------Ri~vaGl~~~ni~~va~ai~~v  395 (396)
T COG1448         335 PRNFDFI-ISQRGMFSYTGLS----------PEQVDRLREEFGIYLVASG--------RINVAGLNTSNIDYVAKAIAAV  395 (396)
T ss_pred             CcccchH-hhcCceeecCCCC----------HHHHHHHHHhccEEEecCC--------eeeeccCChhhHHHHHHHHHhh
Confidence              36633 6778988876553          3567778899999988754        9999 67999999999998765

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.96  E-value=6.2e-26  Score=210.22  Aligned_cols=323  Identities=17%  Similarity=0.172  Sum_probs=222.7

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEc
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIP  103 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~  103 (387)
                      .++++.+++++...... ....|.  ....++|+.++++++    ..-..+.+++++|+++++..++.++..+||.|++.
T Consensus        14 ~~~~~~~~~a~~~~~~~-~~~~~~--~~~~~~~~~l~~l~~----~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~vlv~   86 (368)
T PRK13479         14 LTTSRTVREAMLRDWGS-WDDDFN--ALTASVRAKLVAIAT----GEEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLVP   86 (368)
T ss_pred             CCCCHHHHHHhCCCCCC-CChHHH--HHHHHHHHHHHHHhC----CCCCceEEEEcCCcHHHHHHHHHhccCCCCeEEEE
Confidence            36788888777665421 110122  245677777777773    11123568899999999999999999999999998


Q ss_pred             CCCCcch--HHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc--CceEEEEeCCCCCccccCCHHHHHHHHHHHHh
Q 038416          104 RPGYPLY--EIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE--NTVAIVIINPGNPCGNVFSYQHLQKIARTARN  179 (387)
Q Consensus       104 ~p~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~  179 (387)
                      .+++++.  ...++  ..|.++..++..  .++.+|++++++++++  +++++++++|+||||...|   +++|.++|++
T Consensus        87 ~~~~~~~~~~~~~~--~~g~~~~~i~~~--~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~---~~~i~~l~~~  159 (368)
T PRK13479         87 DNGAYGARIAQIAE--YLGIAHVVLDTG--EDEPPDAAEVEAALAADPRITHVALVHCETTTGILNP---LDEIAAVAKR  159 (368)
T ss_pred             eCCchHHHHHHHHH--HcCCcEEEEECC--CCCCCCHHHHHHHHHhCCCCcEEEEEcccCccccccC---HHHHHHHHHH
Confidence            8888765  36677  889999999874  2346899999998864  4567899999999999988   7788889999


Q ss_pred             cCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccc-cccccceEEEEeeCCCCcccchhHHHHHHhhh----
Q 038416          180 LGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRW-IVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL----  254 (387)
Q Consensus       180 ~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~-~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~----  254 (387)
                      +|+++|+|++++.   +. ...++...+.   .+++.|++|++ +++|  +||+++++        +.++.+....    
T Consensus       160 ~~~~livDa~~~~---g~-~~~~~~~~~~---d~~v~s~~K~l~g~~G--~G~l~~~~--------~~~~~~~~~~~~~~  222 (368)
T PRK13479        160 HGKRLIVDAMSSF---GA-IPIDIAELGI---DALISSANKCIEGVPG--FGFVIARR--------SELEACKGNSRSLS  222 (368)
T ss_pred             cCCEEEEEccccc---CC-ccccccccCc---eEEEecCccccccCCC--ceEEEECH--------HHHHHhhcCCCCee
Confidence            9999999977642   22 2223333332   37778999975 5677  69999975        4554443211    


Q ss_pred             --------------hccCCcchHHHHHHHHHhhhcc-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC--ceEEEE
Q 038416          255 --------------NAASHPVTFIQAAVPRIVDETN-EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ--GAMFVM  317 (387)
Q Consensus       255 --------------~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~g~~~~  317 (387)
                                    ...++++.+.+.++.++++... +.+++++.+++.++++.+++.|+++ ++..+..+.  ......
T Consensus       223 ~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~  301 (368)
T PRK13479        223 LDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRAL-GFEPLLDAEIQSPIIVT  301 (368)
T ss_pred             ecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCcccCCchhcCceEEE
Confidence                          1123566666666666666543 3456778889999999999999988 676432211  111222


Q ss_pred             EecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe-e-CChHhHHHHHHHHHHHHHHh
Q 038416          318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF-A-AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~-~-~~~e~~~~~~~~l~~~~~~~  383 (387)
                      +.++..  ++. +..++...+ .++||.+.+|..+ ..+++|++. + .++++++.+++.|+++++++
T Consensus       302 ~~~~~~--~~~-~~~~l~~~L-~~~gi~v~~g~~~-~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~  364 (368)
T PRK13479        302 FHAPAD--PAY-DFKEFYERL-KEQGFVIYPGKLT-QVDTFRIGCIGDVDAADIRRLVAAIAEALYWM  364 (368)
T ss_pred             EECCCC--CCc-CHHHHHHHH-HHCCEEEecCCCC-CCCEEEEecCCCCCHHHHHHHHHHHHHHHHHc
Confidence            233321  011 345666666 5569999987543 246899997 3 48999999999999998765

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.96  E-value=9.8e-26  Score=209.34  Aligned_cols=325  Identities=19%  Similarity=0.135  Sum_probs=223.3

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC----CCCe
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR----PGAN   99 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~----~g~~   99 (387)
                      .+++|.+.+++.+.+..... ......+..++.+.+.+++.+.+|  .+.+++++++|+++++..++.++..    ++++
T Consensus        30 ~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~g--~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~  106 (371)
T PRK13520         30 TEPHPIARKAHEMFLETNLG-DPGLFPGTAKLEEEAVEMLGELLH--LPDAYGYITSGGTEANIQAVRAARNLAKAEKPN  106 (371)
T ss_pred             cCchHHHHHHHHHHHhcCCC-CcccCccHHHHHHHHHHHHHHHhC--CCCCCeEEecCcHHHHHHHHHHHHhhccCCCce
Confidence            46778888999888864211 111112333333344444443333  4556788999999999999877653    5789


Q ss_pred             EEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHh
Q 038416          100 ILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARN  179 (387)
Q Consensus       100 vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~  179 (387)
                      |++.+++|+++...++  ..|.+++.++.+  .++.+|+++|+++++++++.|++++++|+||...|   +++|.++|++
T Consensus       107 vl~~~~~h~s~~~~~~--~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~vi~~~~~~~tG~~~~---l~~I~~l~~~  179 (371)
T PRK13520        107 IVVPESAHFSFDKAAD--MLGVELRRAPLD--DDYRVDVKAVEDLIDDNTIGIVGIAGTTELGQVDP---IPELSKIALE  179 (371)
T ss_pred             EEecCcchHHHHHHHH--HcCceEEEecCC--CCCcCCHHHHHHHHhhCCEEEEEEcCCcCCcccCC---HHHHHHHHHH
Confidence            9999999999998888  899999988874  34578999999999888888888889999999977   8888999999


Q ss_pred             cCcEEeecccccccccCC-CCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhh---
Q 038416          180 LGIIVIADEVYNHLAFGS-TPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLN---  255 (387)
Q Consensus       180 ~~~~li~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~---  255 (387)
                      +|+++++|++|+.+.... .....+ .+....-..+..|.+|+ +.++.++|+++..++       ++++.+.....   
T Consensus       180 ~g~~livD~a~~~~~~~~~~~~~~~-~~~~~~vd~~~~s~~K~-~~a~~~~G~~~~~~~-------~~~~~l~~~~~~~~  250 (371)
T PRK13520        180 NGIFLHVDAAFGGFVIPFLDDPPNF-DFSLPGVDSITIDPHKM-GLAPIPAGGILFRDE-------SYLDALAVDTPYLT  250 (371)
T ss_pred             cCCCEEEEecchhHHHHhhcCCCCc-cccCCCCceEEECCccc-cCccCCceEEEEcCH-------HHHHhhcccCcccc
Confidence            999999999998654211 111111 11111112555678896 677788998887541       35444431111   


Q ss_pred             ------ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCC
Q 038416          256 ------AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIG  329 (387)
Q Consensus       256 ------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  329 (387)
                            ..++.+.....++..+++...+..+++..++..++++++.+.|+++ ++..+..+. ..++.+.++        
T Consensus       251 ~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-~~~v~~~~~--------  320 (371)
T PRK13520        251 SKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKER-GFEPVIEPV-LNIVAFDDP--------  320 (371)
T ss_pred             CCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC-CCEEecCCC-ceEEEEecC--------
Confidence                  0112334456666666665555667888899999999999999888 776232444 345555554        


Q ss_pred             cHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHH
Q 038416          330 DDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       330 ~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~  381 (387)
                      +..++...| .++||.+.++.   ..+++|+++.  +++++++.+++.|+++++
T Consensus       321 ~~~~v~~~L-~~~gi~v~~~~---~~~~iRis~~~~~t~edi~~~~~~l~~~~~  370 (371)
T PRK13520        321 NPDEVREKL-RERGWRVSVTR---CPEALRIVCMPHVTREHIENFLEDLKEVKK  370 (371)
T ss_pred             CHHHHHHHH-HHCCceeccCC---CCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence            345666666 45599987743   2568999985  689999999999988765

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.96  E-value=9.4e-26  Score=209.55  Aligned_cols=333  Identities=15%  Similarity=0.165  Sum_probs=223.6

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      .+.+++-|....+.++ .+|.+.+++++++.+..  ..+. ....+++..+++++.+..+    .+.+++++++++|++.
T Consensus        30 ~~lD~~s~~~~~~lG~-~~p~v~~a~~~~~~~~~--~~~~-~~~~~~~~~la~~l~~~~~----~~~~~~~~sG~~a~~~  101 (377)
T PRK02936         30 TYLDFTSGIAVCNLGH-CHPTVTKAVQEQLDDIW--HVSN-LFTNSLQEEVASLLAENSA----GDLVFFCNSGAEANEA  101 (377)
T ss_pred             EEEECCcchhhccCCC-CCHHHHHHHHHHHHhcc--cccc-ccCCHHHHHHHHHHHhcCC----CCEEEEeCCcHHHHHH
Confidence            4566655543344455 78899999999987531  2222 2446889999999976432    3589999999999999


Q ss_pred             HHHhhc-CCC-CeEEEcCCCCcchHHHhhccCCCceee---eeccCCCCCc--cCChhhHHHhhccCceEEEEeCCCCCc
Q 038416           89 SLSVLA-RPG-ANILIPRPGYPLYEIHAAGSNNNLEAR---HYDLLPEKRW--EVDLDGVEALADENTVAIVIINPGNPC  161 (387)
Q Consensus        89 ~~~~l~-~~g-~~vl~~~p~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~--~~~~~~l~~~~~~~~~~v~l~~p~npt  161 (387)
                      +++... .+| ++|++.+++|++...... +..+....   ..++.+...+  .-|++.+++.+.++++++++..+++++
T Consensus       102 A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ii~e~i~~~~  180 (377)
T PRK02936        102 ALKLARKHTGKSKIVTFEQSFHGRTFGTM-SATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNEEVAAVMLEVVQGEG  180 (377)
T ss_pred             HHHHHHHhcCCCeEEEECCCcCCCcHHhh-hccCCccccccCCCCCCCceEeCCCCHHHHHHhccCCeEEEEEecccCCC
Confidence            998643 244 679999999986432222 02221110   1111111000  016889999888788888888888999


Q ss_pred             ccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCc
Q 038416          162 GNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGI  240 (387)
Q Consensus       162 G~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~  240 (387)
                      |.. .+++++++|.++|++||+++|+||+|.++.+.|.... +..+.....   +.++||.++ +|+|+||+++++    
T Consensus       181 G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~-~~~~~~~~d---i~t~sK~l~-~G~~ig~v~~~~----  251 (377)
T PRK02936        181 GVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFA-YEQFGLDPD---IVTVAKGLG-NGIPVGAMIGKK----  251 (377)
T ss_pred             CCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhH-HHhhCCCCc---EEEEccccc-CCCccEEEEEcH----
Confidence            887 5789999999999999999999999998877664322 212221222   337999987 899999999875    


Q ss_pred             ccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc----CCCCCCCCCCCceEE
Q 038416          241 LQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE----IPCITCPVKPQGAMF  315 (387)
Q Consensus       241 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~g~~  315 (387)
                          ++.+.+.... ..+++++++.+.++.++|+...+   .+..+++.++.+.+++.|++    ++.+..+  ...|.+
T Consensus       252 ----~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v--~~~g~~  322 (377)
T PRK02936        252 ----ELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQ---PSFLEEVQEKGEYFLQKLQEELEHLECVKNI--RGKGLM  322 (377)
T ss_pred             ----HHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCcEEeE--eecceE
Confidence                6777765433 24456789999999988875322   22334555555555555554    3332211  235778


Q ss_pred             EEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHH
Q 038416          316 VMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFC  380 (387)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~  380 (387)
                      +|+.++.       +...+.. .+.++||.+.|+.    .+++|+++  ..+++++++++++|++++
T Consensus       323 ~~i~~~~-------~~~~~~~-~l~~~gv~v~~~g----~~~lRi~p~~~~~~~~i~~~i~~l~~~~  377 (377)
T PRK02936        323 IGIECTE-------EVAPVIE-QLREEGLLVLSAG----PNVIRLLPPLVVTKEELDQAVYLLKKVL  377 (377)
T ss_pred             EEEEecc-------hHHHHHH-HHHHCCeEEecCC----CCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence            8988863       2344444 5577899998853    47899996  568999999999998753

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.95  E-value=1e-25  Score=210.64  Aligned_cols=328  Identities=12%  Similarity=0.093  Sum_probs=223.3

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCC--CC------CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc--
Q 038416           25 SDSTVAEDAVVDALRTAHYNCY--SP------TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA--   94 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y--~~------~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--   94 (387)
                      |.++.+++++.+.+.....+..  ..      .....++|+.+++++      ++++++|++++|+++++..++.++.  
T Consensus        14 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------g~~~~~v~~~~g~t~a~~~~l~~l~~~   87 (402)
T TIGR02006        14 PVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELI------GADSREIVFTSGATESNNLAIKGIAHF   87 (402)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHh------CCCCCeEEEeCCHHHHHHHHHHHHHHh
Confidence            6789999999888753211111  10      123456677888887      4577899999999999999887763  


Q ss_pred             --CCCCeEEEcCCCCcchHHH---hhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHH
Q 038416           95 --RPGANILIPRPGYPLYEIH---AAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQH  169 (387)
Q Consensus        95 --~~g~~vl~~~p~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~  169 (387)
                        ++||+|+++.++|+++...   ++  ..|.+++.++++  .++.+|+++++++++++++++++++++||||...|   
T Consensus        88 ~~~~g~~Vi~~~~~h~s~~~~~~~~~--~~g~~v~~v~~~--~~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~---  160 (402)
T TIGR02006        88 YKSKGNHIITSKTEHKAVLDTCRYLE--REGFEVTYLPPK--SNGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQD---  160 (402)
T ss_pred             hcCCCCEEEECCCccHHHHHHHHHHH--hcCCEEEEEccC--CCCcCCHHHHHHhcCCCCEEEEEECCCcCceeccc---
Confidence              6889999999999876544   34  568999998875  34468999999999889999999999999999977   


Q ss_pred             HHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHH
Q 038416          170 LQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDS  249 (387)
Q Consensus       170 ~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~  249 (387)
                      +++|.++|+++|+++|+|++++..    ..+..+.....   .+++.|.+|.++.+|  +|++++++.....-.|.....
T Consensus       161 ~~~I~~l~~~~g~~livD~a~a~g----~~~~~~~~~~~---D~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~~~~~g~  231 (402)
T TIGR02006       161 IAAIGEICRERKVFFHVDAAQSVG----KIPINVNELKV---DLMSISGHKIYGPKG--IGALYVRRKPRVRLEALIHGG  231 (402)
T ss_pred             HHHHHHHHHHcCCEEEEEcchhcC----CcccCccccCC---CEEEEehhhhcCCCc--eEEEEEccCCCCCCCceecCC
Confidence            788899999999999999999842    22222333333   388889999876556  899888753211111111000


Q ss_pred             HHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCc--eEEEEEecCcccccC
Q 038416          250 IKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQG--AMFVMVKLNVSMLED  327 (387)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~  327 (387)
                      -.......++++.....++..+++... ..++...++.+++++.+++.|++++++.....+..  ...+.+.|+.     
T Consensus       232 ~~~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f~~-----  305 (402)
T TIGR02006       232 GHERGMRSGTLPTHQIVGMGEAFRIAK-EEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLNVSFNY-----  305 (402)
T ss_pred             CccCCccCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEEeC-----
Confidence            000011134566667777767776433 45777788899999999999988877653311111  1111223331     


Q ss_pred             CCcHHHHHHHHHHhcCeEEEcCCccCC-------------------CCeEEEEee--CChHhHHHHHHHHHHHHHHhh
Q 038416          328 IGDDLEFCLKLAKEESVIILPGRTVGM-------------------KNWLRIAFA--AEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       328 ~~~~~~~~~~ll~~~gi~v~~g~~~~~-------------------~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~  384 (387)
                       .+...+...+   .++.+..|..+..                   .+++|+|++  ++++|++++++.|+++++.++
T Consensus       306 -~~~~~~~~~l---~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~~  379 (402)
T TIGR02006       306 -VEGESLIMAL---KDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKLR  379 (402)
T ss_pred             -cCHHHHHHhc---CCEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence             1233343332   3888887766532                   268999995  589999999999999887764

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.95  E-value=1.8e-25  Score=209.30  Aligned_cols=323  Identities=16%  Similarity=0.082  Sum_probs=216.8

Q ss_pred             CCCCCCCcHHHHHHHHHHhcCCCCC--C----CCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh
Q 038416           20 GVSLLSDSTVAEDAVVDALRTAHYN--C----YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL   93 (387)
Q Consensus        20 ~~~~~~~~~~v~~a~~~~~~~~~~~--~----y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l   93 (387)
                      .|.++..+|.+.+++++++..-...  .    +.......+|++.+++++.        .+..++++++++++..++..+
T Consensus        54 ~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g--------~~~~~~~~SG~~An~~ai~~l  125 (406)
T PRK13393         54 DYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHG--------KEAALLFTSGYVSNWAALSTL  125 (406)
T ss_pred             cccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhC--------CCcEEEeCCcHHHHHHHHHHh
Confidence            3447788999999999998752110  0    1111134677777777772        256666666677999999877


Q ss_pred             cC--CCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc----cCceEEEEeCCCCCccccCCH
Q 038416           94 AR--PGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD----ENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        94 ~~--~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~v~l~~p~nptG~~~~~  167 (387)
                      ..  +|+.|++....|.++...+.  ..|.++..++.       .|++.+++.+.    +++++|++++++|++|.+.| 
T Consensus       126 ~~~~~g~~I~~~~~~H~s~~~~~~--~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~-  195 (406)
T PRK13393        126 GSRLPGCVILSDELNHASMIEGIR--HSRAEKRIFRH-------NDPADLERKLSDLDPHRPKLVAFESVYSMDGDIAP-  195 (406)
T ss_pred             hcCCCCCEEEEccchhHHHHHHHH--HcCCeEEEeCC-------CCHHHHHHHHHhccCCCCEEEEEcCCCCCCCchhC-
Confidence            65  67877777777777777777  77777766653       25566666553    35678889999999999988 


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                        +++|.++|+++|+++|+|++|+...++..+......... ....++++|+||+|+++|   ||+++++        ++
T Consensus       196 --l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~G---G~~~~~~--------~~  262 (406)
T PRK13393        196 --IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVMG---GYITGSA--------AL  262 (406)
T ss_pred             --HHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcccC---ceeeCCH--------HH
Confidence              888889999999999999999833332211111111111 123577799999998877   8988765        67


Q ss_pred             HHHHHhhhh---ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcc
Q 038416          247 VDSIKGCLN---AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVS  323 (387)
Q Consensus       247 ~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~  323 (387)
                      ++.++....   ++.+.++..+.++.++|+...+.  .....++.++++++.+.|+++ ++.++ .+ .+.++.+.++..
T Consensus       263 ~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~--~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~-~~~i~~v~~~~~  337 (406)
T PRK13393        263 CDFIRSFASGFIFTTSLPPAVAAGALASVRHLKAS--SAERERHQDRVARLRARLDKA-GIPHL-PN-PSHIVPVMVGDP  337 (406)
T ss_pred             HHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhC--HHHHHHHHHHHHHHHHHHHHc-CCCcC-CC-CCCeEEEEeCCH
Confidence            777765432   23455666677777777643222  122356678888899999876 66633 33 444554444321


Q ss_pred             cccCCCcHHHHHHHHHHhcCeEEEcCCccCC---CCeEEEEee--CChHhHHHHHHHHHHHHHHh
Q 038416          324 MLEDIGDDLEFCLKLAKEESVIILPGRTVGM---KNWLRIAFA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       324 ~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                           ....++...+++++||.+.++.....   ..++||+++  +++++++++++.|+++++++
T Consensus       338 -----~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~~~~~~  397 (406)
T PRK13393        338 -----VLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEIWARL  397 (406)
T ss_pred             -----HHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhc
Confidence                 12356666676667999988644322   368999995  68999999999999988764

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.95  E-value=1.3e-25  Score=210.46  Aligned_cols=326  Identities=17%  Similarity=0.166  Sum_probs=219.4

Q ss_pred             cCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCC-----CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChH-H
Q 038416           11 HSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSP-----TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCS-Q   84 (387)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-----~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~-~   84 (387)
                      +..+.|.|    +++.|+.+.+++.++ ..  ...|.+     ..|..++++++++++.+.++.  +.++++++++++ +
T Consensus        23 ~~l~~g~~----~~~~p~~~~~~~~~~-~~--~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~--~~~~v~~~~~g~~~   93 (398)
T cd00613          23 SFLGSGTY----KHNPPAVIKRNILEN-EF--YTAYTPYQPEISQGRLQALFELQTMLCELTGM--DVANASLQDEATAA   93 (398)
T ss_pred             cccccccc----CCcCcHHHHHHhccc-cC--cccCCCCChhhhhhHHHHHHHHHHHHHHHHCC--CccceeccCchHHH
Confidence            56667666    899999998887776 22  224444     578899999999999987763  444676666555 4


Q ss_pred             HHHHHHHhhcCC--CCeEEEcCCCCcchHHHhhccCCC----ceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCC
Q 038416           85 AIEISLSVLARP--GANILIPRPGYPLYEIHAAGSNNN----LEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPG  158 (387)
Q Consensus        85 a~~~~~~~l~~~--g~~vl~~~p~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~  158 (387)
                      +...+..++..+  ||.|++++|.|+.+...+.  ..+    .+++.+++.+  ++.+|++++++++++++++|++++|+
T Consensus        94 ~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~--~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~t~~viv~~~~  169 (398)
T cd00613          94 AEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVAR--TRGEPLGIEVVEVPSDE--GGTVDLEALKEEVSEEVAALMVQYPN  169 (398)
T ss_pred             HHHHHHHHHhcccCCCEEEEcCccCcchHHHHH--HhcccCCcEEEEeccCC--CCCcCHHHHHHhcCCCeEEEEEECCC
Confidence            544555555565  9999999999998877776  555    8888888743  34689999999998899999999986


Q ss_pred             CCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCccccccc----ccceEEEEe
Q 038416          159 NPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVP----GWRLGWLVT  234 (387)
Q Consensus       159 nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~----g~r~G~i~~  234 (387)
                       ++|...  +.+++|.++|+++|+++|+|+++.....    .......   +..+++.|++|++ .+    |+++|+++.
T Consensus       170 -~~G~~~--~~l~~i~~la~~~g~~livD~~~~~~~~----~~~~~~~---~~d~~~~s~~K~~-~p~g~Ggp~~g~l~~  238 (398)
T cd00613         170 -TLGVFE--DLIKEIADIAHSAGALVYVDGDNLNLTG----LKPPGEY---GADIVVGNLQKTG-VPHGGGGPGAGFFAV  238 (398)
T ss_pred             -CCceec--chHHHHHHHHHhcCCEEEEEeccccccC----CCChHHc---CCCEEEeeccccC-CCCCCCCCceeEEEE
Confidence             899984  3469999999999999999998764221    1111122   2348899999997 54    788999998


Q ss_pred             eCCCCcccchhHHHHHHhh------------------------------hhccCCcchHHHHHHHHHhhhccHHHHHHHH
Q 038416          235 SDPNGILQNSGFVDSIKGC------------------------------LNAASHPVTFIQAAVPRIVDETNEAFFAKII  284 (387)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  284 (387)
                      ++        ++++.+...                              .....+.++....++...+....+..+.+..
T Consensus       239 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~  310 (398)
T cd00613         239 KK--------ELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIA  310 (398)
T ss_pred             hh--------hhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            75        344332100                              0011122223333333333333456778888


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCCceE--EEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe
Q 038416          285 GLLKETADICYERIKEIPCITCPVKPQGAM--FVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF  362 (387)
Q Consensus       285 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~  362 (387)
                      ++++++++++++.|+++++.. .  +.+..  .++++++...  + .+..++...| .++||.+.... ....+.+|+++
T Consensus       311 ~~~~~~~~~l~~~L~~~~~~~-~--~~~~~~~~v~~~~~~~~--~-~~~~~~~~~L-~~~gi~~~~~~-~~~~~~lRis~  382 (398)
T cd00613         311 ERAHLNANYLAKRLKEVGGVL-P--FNGPFFHEFVLRLPPLY--G-IRAEDLAKAL-IDGGFHAPTMY-LPVDGTLMIEP  382 (398)
T ss_pred             HHHHHHHHHHHHHHHhcCCcc-c--CCCCeeEEEEEEcCCcc--h-HHHHHHHHhh-hhcCccccccc-cCCCCeEEEEc
Confidence            999999999999999885443 2  22222  2455554210  0 1345666666 45688764421 12257899999


Q ss_pred             e--CChHhHHHHHHHH
Q 038416          363 A--AEPATLEDGLERI  376 (387)
Q Consensus       363 ~--~~~e~~~~~~~~l  376 (387)
                      .  ++++|++++++.|
T Consensus       383 ~~~~t~edid~~~~~L  398 (398)
T cd00613         383 TETETKEELDALLEAL  398 (398)
T ss_pred             CCCCCHHHHHHHHHhC
Confidence            4  6899999998764

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.95  E-value=1.7e-25  Score=207.06  Aligned_cols=293  Identities=16%  Similarity=0.135  Sum_probs=201.4

Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhh--ccCCC
Q 038416           43 YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAA--GSNNN  120 (387)
Q Consensus        43 ~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~--~~~~g  120 (387)
                      +..|+. ....+|++.++++++        .++.+++++++.++..++.+++++||+|+++.|.|........  ....|
T Consensus        55 y~r~~~-pt~~~Le~~lA~l~G--------~~~al~~~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~g  125 (386)
T PRK06767         55 YSRLGN-PTVKLFEERMAVLEG--------GEEALAFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFM  125 (386)
T ss_pred             ccCCCC-cchHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcC
Confidence            334444 457899999999983        2456666677789999999999999999999998876544433  00345


Q ss_pred             ceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCC
Q 038416          121 LEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPY  200 (387)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~  200 (387)
                      .++..++.       .|++++++++++++++|++++|+||||.+++   +++|.++|+++|+++|+|++|+.....    
T Consensus       126 i~~~~~~~-------~d~~~l~~~i~~~tklV~lesp~NptG~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~----  191 (386)
T PRK06767        126 ITHSFCDM-------ETEADIENKIRPNTKLIFVETPINPTMKLID---LKQVIRVAKRNGLLVIVDNTFCSPYLQ----  191 (386)
T ss_pred             eEEEEeCC-------CCHHHHHHhhCcCceEEEEeCCCCCCceecC---HHHHHHHHHHcCCEEEEECCCcccccC----
Confidence            55444432       3789999999889999999999999999987   788888889999999999999742211    


Q ss_pred             ccccccCCCccEEEEecCcccccccccce-EEEEeeCCCCcccchhHHHHHHhh-hh-ccCCcchHHHHHHHHHhhhccH
Q 038416          201 VPMGVFGSIVPVITLGSISKRWIVPGWRL-GWLVTSDPNGILQNSGFVDSIKGC-LN-AASHPVTFIQAAVPRIVDETNE  277 (387)
Q Consensus       201 ~~~~~~~~~~~~~~i~s~sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~~~~  277 (387)
                      .++. ...   .+++.|++|.++.+|.++ |++++++        +.++++... .. .....+++.++.+...|+.   
T Consensus       192 ~pl~-~g~---Div~~S~sK~l~g~g~~~gG~v~~~~--------~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L~t---  256 (386)
T PRK06767        192 RPLE-LGC---DAVVHSATKYIGGHGDVVAGVTICKT--------RALAEKIRPMRKDIGGIMAPFDAWLLLRGLKT---  256 (386)
T ss_pred             Cchh-cCC---cEEEecCcceecCCCCceeEEEEeCh--------HHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCc---
Confidence            1221 222   378889999998888875 8888865        566655432 22 3344455555544444433   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----------ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEE
Q 038416          278 AFFAKIIGLLKETADICYERIKEIPCITCPVKPQ----------GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIIL  347 (387)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~  347 (387)
                        +..+.++.+++++.+.+.|+++|++..+.+|.          .|.++.+.++..    ..+...+++.+ +..++.+.
T Consensus       257 --l~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~----~~~~~~f~~~l-~~~~~~~s  329 (386)
T PRK06767        257 --LAVRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKGG----KEETQAFINDL-HFITIAVS  329 (386)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcCC----HHHHHHHHHhC-CccEEecC
Confidence              55677888999999999999999888655442          233555555421    01344566655 55565555


Q ss_pred             cCCccCC-----------------------CCeEEEEeeCChHhHHHHHHHHHHHHHH
Q 038416          348 PGRTVGM-----------------------KNWLRIAFAAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       348 ~g~~~~~-----------------------~~~~Ri~~~~~~e~~~~~~~~l~~~~~~  382 (387)
                      -|+....                       ++.+|+|++.  |+.+.+++.|.+++..
T Consensus       330 ~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl--E~~~dl~~dl~~al~~  385 (386)
T PRK06767        330 LGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGL--ESWEDIVSDLEQALKK  385 (386)
T ss_pred             CCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHhh
Confidence            4432110                       2579999998  5677888888887753

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.95  E-value=1.7e-25  Score=208.59  Aligned_cols=316  Identities=17%  Similarity=0.150  Sum_probs=209.7

Q ss_pred             CcHHHHHHHHHHhcCCCCC-CCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC---------
Q 038416           26 DSTVAEDAVVDALRTAHYN-CYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR---------   95 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~-~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~---------   95 (387)
                      .+|.+.++++++++..... .+.......+|.+.++++.        ..+.+++++++++|++.+++....         
T Consensus        57 ~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------~~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~  128 (396)
T PRK04073         57 RHPKIIQALKDQADKVTLTSRAFHSDQLGPWYEKVAKLT--------GKDMVLPMNTGAEAVETAIKAARRWAYDVKGVE  128 (396)
T ss_pred             CCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhcC--------CCCeEEEcCChHHHHHHHHHHHHHHhhhccCCC
Confidence            6789999999988753211 1111112234444454433        236899999999999999997631         


Q ss_pred             CC-CeEEEcCCCCcchHHHhhccCCCcee---eeeccCCC---CCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           96 PG-ANILIPRPGYPLYEIHAAGSNNNLEA---RHYDLLPE---KRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        96 ~g-~~vl~~~p~~~~~~~~~~~~~~g~~~---~~~~~~~~---~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      +| ++|+....+|++...... +..+...   ..-+..+.   -. .-|++++++.++++++++++..++||+|..++++
T Consensus       129 ~~r~~ii~~~~~~HG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~l~~~i~~~~~~viiep~~~~~G~~~~~~  206 (396)
T PRK04073        129 PNKAEIIACEGNFHGRTMAAV-SLSSEEEYKRGFGPMLPGIKKIP-YGDLEALKAAITPNTAAFLVEPIQGEAGINIPPE  206 (396)
T ss_pred             CCCCEEEEECCCcCCCCHHHH-hhcCCcccccCCCCCCCCceEeC-CCCHHHHHHhcccCeEEEEEcCccCCCCCccCCH
Confidence            34 678888888876543322 0222110   00010000   00 1168899998887888888888899999987754


Q ss_pred             -HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          169 -HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       169 -~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                       .+++|.++|+++|+++|+||+|.++...+.... .......   ..+.++||.++.+|+|+||+++++        ++.
T Consensus       207 ~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~-~~~~~~~---pdi~~~sK~lg~gg~~ig~~~~~~--------~i~  274 (396)
T PRK04073        207 GFLKAARELCKEENVLFIADEIQTGLGRTGKLFA-CDWDNVT---PDMYILGKALGGGVFPISCVAANR--------DIL  274 (396)
T ss_pred             HHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHH-hhhcCCC---CCEEEecccccCCCCcceEEEEcH--------HHH
Confidence             699999999999999999999998766553221 1111111   123468999999889999999976        677


Q ss_pred             HHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCCCCCCCceEEEEEecCccc
Q 038416          248 DSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEI--PCITCPVKPQGAMFVMVKLNVSM  324 (387)
Q Consensus       248 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~g~~~~~~~~~~~  324 (387)
                      +.+.... ..+++.+++.+.++.+.|+...+.   ...++..++++++.+.|+++  +.+. . .+..|.|+++.++.  
T Consensus       275 ~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~---~l~~~~~~~~~~l~~~L~~l~~~~i~-~-~~~~g~~~~~~~~~--  347 (396)
T PRK04073        275 GVFTPGSHGSTFGGNPLACAVSIAALEVLEEE---KLPERSLELGEYFKEQLKEIDNPMIK-E-VRGRGLFIGVELNE--  347 (396)
T ss_pred             hhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHhhcCCccc-c-eecceEEEEEEecc--
Confidence            7775432 245667888998888888753322   23345556677777777765  2233 1 23346777877752  


Q ss_pred             ccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHH
Q 038416          325 LEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFC  380 (387)
Q Consensus       325 ~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~  380 (387)
                           +..++...+ .++||.+.+..    .+++||++  ..+++++++++++|++++
T Consensus       348 -----~~~~~~~~l-~~~Gv~~~~~~----~~~iRi~p~l~~t~e~i~~~~~~l~~~l  395 (396)
T PRK04073        348 -----PARPYCEAL-KEEGLLCKETH----ETVIRFAPPLVITKEELDWAFEKIKAVL  395 (396)
T ss_pred             -----hHHHHHHHH-HHCCeEEecCC----CCEEEEECCcccCHHHHHHHHHHHHHHh
Confidence                 345666666 55699987642    47899997  568999999999998765

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.95  E-value=3.3e-25  Score=203.84  Aligned_cols=284  Identities=21%  Similarity=0.213  Sum_probs=202.6

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcch----HHHhhccCCCceeee
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLY----EIHAAGSNNNLEARH  125 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~----~~~~~~~~~g~~~~~  125 (387)
                      ....+|++.++++.+      .  +..++++|+++++..++ .++++||+|+++.|.|++.    ...+.  ..|+++..
T Consensus        52 pt~~~le~~la~l~g------~--~~~~~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~--~~G~~v~~  120 (366)
T PRK08247         52 PTRGVLEQAIADLEG------G--DQGFACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWK--KWNVRFVY  120 (366)
T ss_pred             chHHHHHHHHHHHhC------C--CcEEEEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhh--ccCceEEE
Confidence            467899999999983      2  34577888899999876 5778999999999999874    34455  68888888


Q ss_pred             eccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccc
Q 038416          126 YDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV  205 (387)
Q Consensus       126 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~  205 (387)
                      ++.       .|++++++++++++++|++++|+||+|..   .++++|+++|+++|+++|+|++|..... .   .++. 
T Consensus       121 vd~-------~d~~~l~~~i~~~tklv~le~P~NP~~~~---~dl~~I~~la~~~g~~lIvD~t~~~~~~-~---~p~~-  185 (366)
T PRK08247        121 VNT-------ASLKAIEQAITPNTKAIFIETPTNPLMQE---TDIAAIAKIAKKHGLLLIVDNTFYTPVL-Q---RPLE-  185 (366)
T ss_pred             ECC-------CCHHHHHHhcccCceEEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCCccccc-c---Cchh-
Confidence            764       37899999998899999999999998654   7799999999999999999999963221 1   1111 


Q ss_pred             cCCCccEEEEecCcccccc-cccceEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHH
Q 038416          206 FGSIVPVITLGSISKRWIV-PGWRLGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKI  283 (387)
Q Consensus       206 ~~~~~~~~~i~s~sK~~~~-~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~  283 (387)
                         ....+++.|+||.++. ++.+.|++++++       +++.+.++..+. .+...+++.++.+...++.     +..+
T Consensus       186 ---~g~di~i~S~sK~~~g~~d~~~G~iv~~~-------~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~t-----l~~r  250 (366)
T PRK08247        186 ---EGADIVIHSATKYLGGHNDVLAGLVVAKG-------QELCERLAYYQNAAGAVLSPFDSWLLIRGMKT-----LALR  250 (366)
T ss_pred             ---cCCcEEEeecceeccCCCceeeeEEecCh-------HHHHHHHHHHHHhcCCCCChHHHHHHHhccCc-----HHHH
Confidence               1335999999999864 356889998853       256666665543 3455667677666665553     5566


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCC-CceEEEEEecCcccccCCCcHHHHHHHH---------HHhcCeEEEcCCccC
Q 038416          284 IGLLKETADICYERIKEIPCITCPVKP-QGAMFVMVKLNVSMLEDIGDDLEFCLKL---------AKEESVIILPGRTVG  353 (387)
Q Consensus       284 ~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~l---------l~~~gi~v~~g~~~~  353 (387)
                      .++.+++++.+.+.|+++|++..+..| .+|++.| .++..     .....++..+         .....+.+.|+..++
T Consensus       251 ~~~~~~~a~~l~~~L~~~p~v~~v~~P~~gg~~sf-~~~~~-----~~~~~~~~~l~~~~~~~slg~~~sl~~~p~~~~~  324 (366)
T PRK08247        251 MRQHEENAKAIAAFLNEQPGVTDVLYPGRGGMLSF-RLQDE-----EWVNPFLKSLKLITFAESLGGVESFITYPATQTH  324 (366)
T ss_pred             HHHHHHHHHHHHHHHHhCCCeeEEecCCcCcEEEE-EECCH-----HHHHHHHHcCCcceEccCCCCCceEEECCccccc
Confidence            777899999999999999888755566 6676665 55310     0111222221         122345555765432


Q ss_pred             C-------------CCeEEEEeeCChHhHHHHHHHHHHHHHH
Q 038416          354 M-------------KNWLRIAFAAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       354 ~-------------~~~~Ri~~~~~~e~~~~~~~~l~~~~~~  382 (387)
                      .             ++.+|++++.  |+.+.+++.|.++++.
T Consensus       325 ~~~~~~~r~~~gi~~~~~R~svGl--E~~~dl~~dl~~al~~  364 (366)
T PRK08247        325 ADIPEEIRIANGVCNRLLRFSVGI--ENVEDLIADLKQAFKQ  364 (366)
T ss_pred             ccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHhh
Confidence            2             3579999998  6778888888888865

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.95  E-value=4.4e-26  Score=209.53  Aligned_cols=310  Identities=16%  Similarity=0.104  Sum_probs=219.2

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC----------
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR----------   95 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~----------   95 (387)
                      ++..+.+.+...+... ...|....+..++++.+++++.+.+|.+...+++++|+|+++++..++.++..          
T Consensus        11 ~~~~~~~~~~~~~n~~-~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~   89 (345)
T cd06450          11 PPALLLEMLTSAKNAI-DFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGG   89 (345)
T ss_pred             HHHHHHHHHHHhcCCC-CcccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhccc
Confidence            3445555555555433 34577777889999999999998887654556899999999999999988742          


Q ss_pred             --CC--CeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc------CceEEEEeCCCCCccccC
Q 038416           96 --PG--ANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE------NTVAIVIINPGNPCGNVF  165 (387)
Q Consensus        96 --~g--~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~  165 (387)
                        ++  +.|+++.++|.++...+.  ..|.+++.+++++.  +.+|+++|++++++      +++++++++|+||||...
T Consensus        90 ~~~~~~~~v~~~~~~h~~~~~~~~--~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~  165 (345)
T cd06450          90 GRGIDKLVIVCSDQAHVSVEKAAA--YLDVKVRLVPVDED--GRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAID  165 (345)
T ss_pred             ccccCCeEEEEcCcchhHHHHHHH--HHhcCeEEeeeCCC--CCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCC
Confidence              23  478889999999988888  88999999987543  37899999999977      788889999999999985


Q ss_pred             CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccc-cccCCCccEEEEecCcccccccccceEEEEeeCCCCcccch
Q 038416          166 SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPM-GVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNS  244 (387)
Q Consensus       166 ~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~  244 (387)
                      +   +++|+++|+++|+++|+|++|+.+.......... ..+  ..-.++..|++|++ .++.++|+++.+         
T Consensus       166 ~---~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~d~~~~s~~K~l-~~p~g~g~~~~~---------  230 (345)
T cd06450         166 P---LEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGI--ERVDSISVDPHKYG-LVPLGCSAVLVR---------  230 (345)
T ss_pred             C---HHHHHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCc--cccCEEEEchhHhh-CCCcchHHHHHH---------
Confidence            5   8999999999999999999999765432111111 111  11125667999974 455667776541         


Q ss_pred             hHHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccc
Q 038416          245 GFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSM  324 (387)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~  324 (387)
                                       ...++++...+.   ...++++.++..++++++.+.|++++++.++..+..+ ++.++++...
T Consensus       231 -----------------~~~~~~~l~~l~---~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-iv~f~~~~~~  289 (345)
T cd06450         231 -----------------ALKLWATLRRFG---RDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLS-LVCFRLKPSV  289 (345)
T ss_pred             -----------------HHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcee-EEEEEECCcc
Confidence                             223333333333   3567888888889999999999998888755344444 4455554210


Q ss_pred             ccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--C-ChHhHHHHHHHHHH
Q 038416          325 LEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--A-EPATLEDGLERIKA  378 (387)
Q Consensus       325 ~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~-~~e~~~~~~~~l~~  378 (387)
                      -.+ .+..++...+ .++|+.+.++..+....++|++++  . +.++++++++.|++
T Consensus       290 ~~~-~~~~~i~~~L-~~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~  344 (345)
T cd06450         290 KLD-ELNYDLSDRL-NERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER  344 (345)
T ss_pred             hhh-HHHHHHHHHH-HhcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence            000 1234565655 566666555554445679999995  3 78999999999865

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.95  E-value=9e-26  Score=212.59  Aligned_cols=328  Identities=17%  Similarity=0.190  Sum_probs=213.4

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc--CCCCeEEEc
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA--RPGANILIP  103 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~g~~vl~~  103 (387)
                      .+|.+.+++.+++...  ..|+...+..++...+++.+.+.++  ...+++++++|+++|+..+++.+.  .++++|++.
T Consensus        53 ~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgsea~~~al~~~~~~~~~~~ii~~  128 (413)
T cd00610          53 NHPEVVEALKEQLAKL--THFSLGFFYNEPAVELAELLLALTP--EGLDKVFFVNSGTEAVEAALKLARAYTGRKKIISF  128 (413)
T ss_pred             CCHHHHHHHHHHHHhC--cCccCcccCCHHHHHHHHHHHHhCC--CCCCEEEEcCcHHHHHHHHHHHHHHHcCCCeEEEE
Confidence            7889999999998653  2344322234445555555544433  357899999999999999999874  567999999


Q ss_pred             CCCCcchHHHhhccCC-------------CceeeeeccCCC----CCccCChhhHHHhhcc--CceEEEEeCC-CCCccc
Q 038416          104 RPGYPLYEIHAAGSNN-------------NLEARHYDLLPE----KRWEVDLDGVEALADE--NTVAIVIINP-GNPCGN  163 (387)
Q Consensus       104 ~p~~~~~~~~~~~~~~-------------g~~~~~~~~~~~----~~~~~~~~~l~~~~~~--~~~~v~l~~p-~nptG~  163 (387)
                      +++|+++.....  ..             ..++..+|.++.    ..+..|++.|++.+++  +...+++++| ++++|.
T Consensus       129 ~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~  206 (413)
T cd00610         129 EGAYHGRTLGAL--SLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGV  206 (413)
T ss_pred             CCCcCCccHHHH--HhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCC
Confidence            999998654433  21             123444544311    1234488899988875  2444555555 667798


Q ss_pred             cC-CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCccc
Q 038416          164 VF-SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQ  242 (387)
Q Consensus       164 ~~-~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~  242 (387)
                      .+ +.+++++|.++|++||+++|+||+|+++...+... ....+...   ..+.|+||+++. |+|+||+++++      
T Consensus       207 ~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~-~~~~~~~~---~d~~t~sK~l~~-g~~~g~~~~~~------  275 (413)
T cd00610         207 IVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMF-AFEHFGVE---PDIVTLGKGLGG-GLPLGAVLGRE------  275 (413)
T ss_pred             ccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchh-hHhhcCCC---CCeEEEcccccC-ccccEEEEEcH------
Confidence            76 67779999999999999999999999865444321 11111111   124588999876 79999999865      


Q ss_pred             chhHHHHH--Hhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCC-CCCCceEEEE
Q 038416          243 NSGFVDSI--KGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPC-ITCP-VKPQGAMFVM  317 (387)
Q Consensus       243 ~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~-~~~~~g~~~~  317 (387)
                        ++++.+  .... ..+.+.+++.+.++.+.++...+   .+..+++.++.+.+.+.|+.+.. ...+ .....|.+++
T Consensus       276 --~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~  350 (413)
T cd00610         276 --EIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEE---EGLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIG  350 (413)
T ss_pred             --HHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCcEEEeecCceEEE
Confidence              677775  2222 23456777788887777764322   34556666777777777765411 0111 1234567778


Q ss_pred             EecCcccc---cCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHH
Q 038416          318 VKLNVSML---EDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFC  380 (387)
Q Consensus       318 ~~~~~~~~---~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~  380 (387)
                      +.++....   ++......+...+ .++||.+.|+.    .+.+|++++  .+++++++++++|++++
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~gv~v~~~~----~~~lR~~~~~~~t~~~i~~~~~~l~~~l  413 (413)
T cd00610         351 IELVKDRATKPPDKELAAKIIKAA-LERGLLLRPSG----GNVIRLLPPLIITEEEIDEGLDALDEAL  413 (413)
T ss_pred             EEEecCCCcCCcchHHHHHHHHHH-HHCCeEEeecC----CCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence            77753210   0001234555555 56799999975    578999884  57899999999998753

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.95  E-value=9.8e-25  Score=200.10  Aligned_cols=251  Identities=15%  Similarity=0.133  Sum_probs=183.5

Q ss_pred             CCCCCCCCcHHHHHHHHHHhcCCCCCCCCC--CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCC
Q 038416           19 LGVSLLSDSTVAEDAVVDALRTAHYNCYSP--TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARP   96 (387)
Q Consensus        19 ~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~--~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~   96 (387)
                      +...+++.++.+.++.......  ...|+.  ..+...||+.+|++.        ..+++++++|+++|+..++.+++++
T Consensus        30 sst~~~~~~~~~~~~~~~~~~~--~~~Y~r~~npt~~~Le~~iA~le--------~~~~~~~~~sG~~Ai~~~l~all~~   99 (394)
T PRK09028         30 ASTVVFDTVAEMRHAAKNRANG--EMFYGRRGTPTHFAFQAAIVELE--------GGAGTALYPSGAAAISNALLSFLKA   99 (394)
T ss_pred             CCCcccCCHHHHHHHhccCccC--CceecCCCCchHHHHHHHHHHHh--------CCCcEEEECCHHHHHHHHHHHHhCC
Confidence            3444677777766655432211  124554  345679999999886        2357899999999999999999999


Q ss_pred             CCeEEEcCCCCcchHHHhh--ccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHH
Q 038416           97 GANILIPRPGYPLYEIHAA--GSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIA  174 (387)
Q Consensus        97 g~~vl~~~p~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~  174 (387)
                      ||+|++++|.|.++...+.  ....|.++..++..       +.+++++++++++++|++++|+||||..   .++++|+
T Consensus       100 GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~-------~~e~l~~~l~~~TklV~lespsNPtg~v---~dl~~I~  169 (394)
T PRK09028        100 GDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPM-------IGEGIRELIRPNTKVLFLESPGSITMEV---QDVPTLS  169 (394)
T ss_pred             CCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCC-------CHHHHHHhcCcCceEEEEECCCCCCCcH---HHHHHHH
Confidence            9999999999988765432  11577777665421       4577898999999999999999999887   6699999


Q ss_pred             HHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccc-cccceEEEEeeCCCCcccchhHHHHHHhh
Q 038416          175 RTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIV-PGWRLGWLVTSDPNGILQNSGFVDSIKGC  253 (387)
Q Consensus       175 ~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~-~g~r~G~i~~~~~~~~~~~~~~~~~~~~~  253 (387)
                      ++|+++|+++|+|++|+...    ...++ .+..   .+++.|.+|+++. ++.-.|+++.++        +++++++..
T Consensus       170 ~la~~~g~~lvvD~t~a~p~----~~~Pl-~~Ga---Divv~S~tK~l~Gh~d~~~G~~~~~~--------~~~~~l~~~  233 (394)
T PRK09028        170 RIAHEHDIVVMLDNTWASPI----NSRPF-EMGV---DISIQAATKYIVGHSDVMLGTATANE--------KHWDQLREH  233 (394)
T ss_pred             HHHHHcCCEEEEECCccccc----cCCcc-ccCc---eEEEEeCCeEecCCCCEEEEEEECCH--------HHHHHHHHH
Confidence            99999999999999998522    12222 2333   4999999999854 446677765433        456666544


Q ss_pred             h-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 038416          254 L-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKP  310 (387)
Q Consensus       254 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  310 (387)
                      . ..+...+++..+.+..-|+.     +.-+.++..+++..+.+.|++.|.+..+.+|
T Consensus       234 ~~~~G~~~~p~~a~l~~rgl~T-----L~lR~~~~~~na~~la~~L~~~p~v~~V~yP  286 (394)
T PRK09028        234 SYLMGQCTSPDDVYLAMRGLRT-----LGVRLAQHEKNALKVANWLATRPEVDHVRHP  286 (394)
T ss_pred             HHhcCCCCCHHHHHHHHcccCc-----HHHHHHHHHHHHHHHHHHHhcCCCccEEECC
Confidence            3 24566777776666555554     7888899999999999999998876655555

>PLN02242 methionine gamma-lyase

Probab=99.95  E-value=2.7e-25  Score=206.52  Aligned_cols=218  Identities=19%  Similarity=0.153  Sum_probs=166.3

Q ss_pred             CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhh--c-cCCCceeee
Q 038416           49 TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAA--G-SNNNLEARH  125 (387)
Q Consensus        49 ~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~--~-~~~g~~~~~  125 (387)
                      .....+|++.+++++        ..+.+++++|+++|+..++.+++++||+|+++.|.|..+...+.  . ...|.++..
T Consensus        75 ~Pt~~~LE~~lA~l~--------g~~~~l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~  146 (418)
T PLN02242         75 NPTVLNLGRQMAALE--------GTEAAYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTF  146 (418)
T ss_pred             ChhHHHHHHHHHHHh--------CCCeEEEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEE
Confidence            456789999999988        34677899999999999999999999999999999987765442  0 036777665


Q ss_pred             eccCCCCCccCChhhHHHhhccC-ceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcccc
Q 038416          126 YDLLPEKRWEVDLDGVEALADEN-TVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMG  204 (387)
Q Consensus       126 ~~~~~~~~~~~~~~~l~~~~~~~-~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~  204 (387)
                      ++.       .|+++++++++++ +++|++++|+||||.+++   +++|+++|+++|+++|+|++|..+.+..      .
T Consensus       147 ~d~-------~d~e~l~~~i~~~~tklV~lesp~NPtG~v~d---l~~I~~la~~~gi~livDea~~~~~~~~------~  210 (418)
T PLN02242        147 VDI-------TDLEAVKKAVVPGKTKVLYFESISNPTLTVAD---IPELARIAHEKGVTVVVDNTFAPMVLSP------A  210 (418)
T ss_pred             cCC-------CCHHHHHHhcCcCCCEEEEEecCCCCCCcccC---HHHHHHHHHHhCCEEEEECCCCccCCCH------H
Confidence            543       2789999999884 999999999999999975   8899999999999999999998654321      1


Q ss_pred             ccCCCccEEEEecCcccccccccc-eEEEEeeCCCCcccchhHHHHHHhhhh---ccCCcchHHHHHHHHHhhhccHHHH
Q 038416          205 VFGSIVPVITLGSISKRWIVPGWR-LGWLVTSDPNGILQNSGFVDSIKGCLN---AASHPVTFIQAAVPRIVDETNEAFF  280 (387)
Q Consensus       205 ~~~~~~~~~~i~s~sK~~~~~g~r-~G~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~  280 (387)
                      .+   +..+++.|+||.++.+|.+ .||+++++        ++++.++....   ...++....+.+...++..   ..+
T Consensus       211 ~~---g~divv~S~SK~l~g~g~~~gG~iv~~~--------~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l---~tl  276 (418)
T PLN02242        211 RL---GADVVVHSISKFISGGADIIAGAVCGPA--------ELVNSMMDLHHGALMLLGPTMNPKVAFELSERL---PHL  276 (418)
T ss_pred             Hc---CCcEEEEeCccccCCCCCceEEEEEcCH--------HHHHHHHHHhhhhhhccCCCCCHHHHHHHHcCC---CcH
Confidence            12   2348899999999888877 58888765        67777775532   1234444455555554432   345


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCC
Q 038416          281 AKIIGLLKETADICYERIKEIPCIT  305 (387)
Q Consensus       281 ~~~~~~~~~~~~~~~~~l~~~~~~~  305 (387)
                      ..+.+++.++++.+.+.|+++ ++.
T Consensus       277 ~~r~~~~~~~a~~la~~L~~~-~~~  300 (418)
T PLN02242        277 SLRMKEHCRRAMEYAKRMKEL-GLK  300 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHhC-CCE
Confidence            667788999999999999987 344

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.95  E-value=5.4e-25  Score=205.75  Aligned_cols=333  Identities=16%  Similarity=0.140  Sum_probs=219.0

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      .+++.+-|....+-++ .+|.+.+++.+++.+..  .++.... .+....+++.+.+..    ..+.++++++|++|+..
T Consensus        41 ~~iD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~--~~~~~~~-~~~~~~l~~~l~~~~----~~~~~~~~~sGseA~e~  112 (403)
T PRK05093         41 EYIDFAGGIAVTALGH-CHPALVKALKEQGEKLW--HISNVFT-NEPALRLAKKLIDAT----FAERVFFANSGAEANEA  112 (403)
T ss_pred             EEEEcCcCHHhccCCC-CCHHHHHHHHHHHHhcC--cccCccC-CHHHHHHHHHHHhhC----CCCEEEEeCchHHHHHH
Confidence            4555544433233355 88999999999987521  1111111 122234444443322    23699999999999999


Q ss_pred             HHHhhcC--------CCCeEEEcCCCCcchHHHhhccCCC------------ceeeeeccCCCCCccCChhhHHHhhccC
Q 038416           89 SLSVLAR--------PGANILIPRPGYPLYEIHAAGSNNN------------LEARHYDLLPEKRWEVDLDGVEALADEN  148 (387)
Q Consensus        89 ~~~~l~~--------~g~~vl~~~p~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~  148 (387)
                      +++....        ..++|+..+.+|++....+. +..+            .++..++.       -|++++++.+.++
T Consensus       113 a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~  184 (403)
T PRK05093        113 AFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTV-SVGGQPKYSDGFGPKPADITHVPF-------NDLAAVKAVIDDH  184 (403)
T ss_pred             HHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhH-hhcCChhhhhcCCCCCCCcEEeCC-------CCHHHHHHHhcCC
Confidence            9986521        23578888888887643322 0111            11111111       1788999988777


Q ss_pred             ceEEEEeCCCCCcccc--CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCCccEEEEecCccccccc
Q 038416          149 TVAIVIINPGNPCGNV--FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVITLGSISKRWIVP  225 (387)
Q Consensus       149 ~~~v~l~~p~nptG~~--~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~s~sK~~~~~  225 (387)
                      +++|++. |.||+|-.  .+.+.+++|.++|++||+++|+||+|+++.+.|..... ...+.++     +.|+||.++ +
T Consensus       185 ~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pd-----i~s~sK~l~-~  257 (403)
T PRK05093        185 TCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPD-----ILTSAKALG-G  257 (403)
T ss_pred             eEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCC-----EEEeccccc-C
Confidence            7777666 76666655  38899999999999999999999999998777653221 1122222     568999987 8


Q ss_pred             ccceEEEEeeCCCCcccchhHHHHHHhh-hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCC-C
Q 038416          226 GWRLGWLVTSDPNGILQNSGFVDSIKGC-LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIP-C  303 (387)
Q Consensus       226 g~r~G~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~  303 (387)
                      |+|+||+++++        ++++.+... ...+++.+++.|+++.++|+...+   .+..+.++++++++.+.|+++. .
T Consensus       258 G~rig~vv~~~--------~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~  326 (403)
T PRK05093        258 GFPIGAMLTTA--------EIASHFKVGTHGSTYGGNPLACAVAEAVFDIINT---PEVLEGVKARRQRFVDGLQKINQK  326 (403)
T ss_pred             CcceEEEEEcH--------HHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999976        677777653 234567788899888887764322   2445677778888888887751 1


Q ss_pred             CCC-CCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHH
Q 038416          304 ITC-PVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFC  380 (387)
Q Consensus       304 ~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~  380 (387)
                      ... ...+..|.++|+.++....   ....+++..+++ .||.+.++.    .+++|+++  ..+++++++++++|.+++
T Consensus       327 ~~~~~~~~~~G~~~~~~l~~~~~---~~~~~~~~~l~~-~Gv~v~~~g----~~~lRl~~~~~~~~~~i~~~~~~l~~~l  398 (403)
T PRK05093        327 YGVFSEIRGMGLLIGAELKPQYK---GRARDFLNAAAE-EGVMVLVAG----PDVLRFAPSLVIEEADIDEGLARFEKAV  398 (403)
T ss_pred             CCCeEeEeeCceEEEEEecCcch---hHHHHHHHHHHH-CCeEEecCC----CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            111 1234568888988753110   134567776654 599998753    47899986  458999999999999988


Q ss_pred             HHh
Q 038416          381 QRH  383 (387)
Q Consensus       381 ~~~  383 (387)
                      .++
T Consensus       399 ~~~  401 (403)
T PRK05093        399 AKV  401 (403)
T ss_pred             HHh
Confidence            754

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.95  E-value=1.1e-24  Score=202.49  Aligned_cols=318  Identities=19%  Similarity=0.176  Sum_probs=215.6

Q ss_pred             CCcHHHHHHHHHHhcCC--CCCCCCC-CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc------C
Q 038416           25 SDSTVAEDAVVDALRTA--HYNCYSP-TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA------R   95 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~--~~~~y~~-~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~------~   95 (387)
                      .+.+.+.+++.......  ....|+. .....++++.+++++      +++++++++++|+++++..++.++.      +
T Consensus        31 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~------g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  104 (373)
T TIGR03812        31 NPHPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLL------HLPDAYGYIVSGGTEANIQAVRAAKNLAREEK  104 (373)
T ss_pred             CchHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHh------CCCCCCeEEeccHHHHHHHHHHHHHHHHhccC
Confidence            45566677777765432  1112221 111245556666666      3466788889999999988877654      4


Q ss_pred             CCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHH
Q 038416           96 PGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIAR  175 (387)
Q Consensus        96 ~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~  175 (387)
                      +||+|+++.++|.++...++  ..|++++.++.+  .++.+|++++++++++++..++++.|+||||...+   +++|.+
T Consensus       105 ~g~~vl~~~~~h~~~~~~~~--~~G~~~~~v~~~--~~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~---~~~i~~  177 (373)
T TIGR03812       105 RTPNIIVPESAHFSFEKAAE--MLGLELRYAPLD--EDYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDD---IEELSK  177 (373)
T ss_pred             CCcEEEECCcchHHHHHHHH--HcCCeEEEEeeC--CCCCcCHHHHHHHHhhCcEEEEEECCCCCCCccCC---HHHHHH
Confidence            67899999999999998888  899999999874  35678999999999877766666668999999976   788888


Q ss_pred             HHHhcCcEEeecccccccccC----CCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHH
Q 038416          176 TARNLGIIVIADEVYNHLAFG----STPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIK  251 (387)
Q Consensus       176 ~~~~~~~~li~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~  251 (387)
                      +|+++|+++|+|++|+.+...    +.....+. +....-..+..|.+|+ +.++.++|+++..++       ++++.+.
T Consensus       178 l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d-~~~~~~d~~~~s~~K~-~~~~~~~G~~~~~~~-------~~~~~l~  248 (373)
T TIGR03812       178 IALENGIYLHVDAAFGGFVIPFLKKGYNPPPFD-FSLPGVQSITIDPHKM-GLSPIPAGGILFRSK-------SYLKYLS  248 (373)
T ss_pred             HHHHcCCeEEEEcCchhHHHHHHhcCCCCCCcc-ccCCCCCEEEECcccc-CCCcCCceEEEEeCH-------HHHhhhc
Confidence            899999999999999864321    00000110 0000111445678895 777788887775431       4555543


Q ss_pred             hhhhc-c--------CCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCc
Q 038416          252 GCLNA-A--------SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNV  322 (387)
Q Consensus       252 ~~~~~-~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~  322 (387)
                      ..... .        ++.+.....++...++...+..+++..+++.++++++++.|+++ ++..+..| ..+++.++++ 
T Consensus       249 ~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~~~~v~~~~~-  325 (373)
T TIGR03812       249 VDAPYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKI-GFEPVIEP-VLNIVAFEVD-  325 (373)
T ss_pred             ccCcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEcCC-CceEEEEEeC-
Confidence            21111 0        13344556666667766556778888899999999999999988 45423233 3445555554 


Q ss_pred             ccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHH
Q 038416          323 SMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKA  378 (387)
Q Consensus       323 ~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~  378 (387)
                             +..++...| .++||.+.++.   .++++|++++  +++++++.+++.|++
T Consensus       326 -------~~~~v~~~L-~~~gi~v~~~~---~~~~iRis~~~~~t~edid~l~~~L~~  372 (373)
T TIGR03812       326 -------DPEEVRKKL-RDRGWYVSVTR---CPKALRIVVMPHVTREHIEEFLEDLKE  372 (373)
T ss_pred             -------CHHHHHHHH-HHCCceeccCC---CCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence                   234566665 56699987653   3578999995  689999999999865

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.95  E-value=9e-25  Score=202.55  Aligned_cols=292  Identities=19%  Similarity=0.256  Sum_probs=197.6

Q ss_pred             CCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHH----hhccCCC
Q 038416           45 CYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIH----AAGSNNN  120 (387)
Q Consensus        45 ~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~----~~~~~~g  120 (387)
                      .|+. ....+|++.+|++++      .  +..+++++++.++..++.+++++||+|+++.+.|.++...    +.  ..|
T Consensus        61 r~~~-p~~~~Le~~lA~l~G------~--~~~~~~~sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~--~~G  129 (398)
T PRK07504         61 RYSN-PTVDMFEKRMCALEG------A--EDARATASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLP--RYG  129 (398)
T ss_pred             cCCC-chHHHHHHHHHHHhC------C--CeeeEecCHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHh--hcC
Confidence            4433 467899999999983      2  3445577888999888888889999999999999875433    34  568


Q ss_pred             ceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCC
Q 038416          121 LEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPY  200 (387)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~  200 (387)
                      .++..++       ..|++++++++++++++|++++|+||+|.+++   +++|.++|+++|+++|+|++|+...+.    
T Consensus       130 ~~v~~vd-------~~d~e~l~~ai~~~tklV~lesp~NptG~v~d---l~~I~~la~~~gi~lvvD~a~a~~~~~----  195 (398)
T PRK07504        130 IESTLVD-------GLDLDNWEKAVRPNTKVFFLESPTNPTLEVID---IAAVAKIANQAGAKLVVDNVFATPLFQ----  195 (398)
T ss_pred             eEEEEEC-------CCCHHHHHHhcCcCceEEEEECCCCCCcEecC---HHHHHHHHHHcCCEEEEECCccccccC----
Confidence            8877764       25899999999999999999999999999987   788888899999999999999854321    


Q ss_pred             ccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHH-HHHhhh-hccCCcchHHHHHHHHHhhhccHH
Q 038416          201 VPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD-SIKGCL-NAASHPVTFIQAAVPRIVDETNEA  278 (387)
Q Consensus       201 ~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~  278 (387)
                      .++ .+.   ..+++.|++|.++.+|.++|++++.++       +++. .++... ..+..++++..+.+...|+.    
T Consensus       196 ~~~-~~g---aDivv~S~sK~l~g~g~~~GG~vv~~~-------~~i~~~~~~~~~~~g~~~s~~~A~~~l~~L~t----  260 (398)
T PRK07504        196 KPL-ELG---AHIVVYSATKHIDGQGRCLGGVVLSDK-------AWIEEHLQDYFRHTGPSLSPFNAWTLLKGLET----  260 (398)
T ss_pred             Cch-hhC---CCEEEeeccccccCCccceEEEEEeCc-------HHHHHHHHHHHHHhCCCCCHHHHHHHHhccch----
Confidence            122 222   238899999999999999865444331       3443 344332 33455666655555555543    


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----------------ceEEEEEecCcccccCCCcHHHHHHHHHHhc
Q 038416          279 FFAKIIGLLKETADICYERIKEIPCITCPVKPQ----------------GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEE  342 (387)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  342 (387)
                       +..+.++..++++.+.+.|++.|++..+.+|.                .|.++.+.+...    ......+++.+ +=.
T Consensus       261 -l~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~~----~~~~~~~~~~l-~~~  334 (398)
T PRK07504        261 -LPVRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGG----KEAAFRFLNAL-KIV  334 (398)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCCC----HHHHHHHHHhC-Ccc
Confidence             67777788889999999998877665333332                244566666421    01122333332 211


Q ss_pred             CeEEEcCCcc----------------------CC-CCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          343 SVIILPGRTV----------------------GM-KNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       343 gi~v~~g~~~----------------------~~-~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      .+.++-|+..                      +. ++.+|+|++.  |+.+.+++.|.++++..+
T Consensus       335 ~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl--E~~~dl~~dl~~al~~~~  397 (398)
T PRK07504        335 RISNNLGDAKSLITHPATTTHKNLSPEARAELGISEGFLRLSAGL--EDTDDLIEDLAAALKKVR  397 (398)
T ss_pred             eecccCCCCCeeeeCCCCCCcccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHHhhh
Confidence            2211112110                      00 3579999999  567788888888887654

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.95  E-value=6.5e-25  Score=203.12  Aligned_cols=220  Identities=20%  Similarity=0.211  Sum_probs=164.5

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHH----HhhccCCCceeee
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEI----HAAGSNNNLEARH  125 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~----~~~~~~~g~~~~~  125 (387)
                      ....++++.+++++        ..+++++++|+++|+..++.+++++||+|+++.+.|.+...    .+.  ..|.++..
T Consensus        61 p~~~~le~~la~l~--------g~~~~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~--~~G~~v~~  130 (390)
T PRK08133         61 PTVTMFQERLAALE--------GAEACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFA--RFGIETTF  130 (390)
T ss_pred             hHHHHHHHHHHHHh--------CCCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHH--HcCcEEEE
Confidence            45678899999988        34578999999999999999999999999999999976443    455  68988888


Q ss_pred             eccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccc
Q 038416          126 YDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV  205 (387)
Q Consensus       126 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~  205 (387)
                      +++.       |++++++++++++++|++++|+||+|.+.+   +++|+++|+++|+++|+|++|+.....    .++ .
T Consensus       131 vd~~-------d~~~l~~~i~~~tklV~ie~p~NptG~v~d---l~~I~~la~~~gi~livD~t~~~~~~~----~pl-~  195 (390)
T PRK08133        131 VDLT-------DLDAWRAAVRPNTKLFFLETPSNPLTELAD---IAALAEIAHAAGALLVVDNCFCTPALQ----QPL-K  195 (390)
T ss_pred             ECCC-------CHHHHHHhcCcCCeEEEEECCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCCcccccC----Cch-h
Confidence            8652       789999999999999999999999999986   789999999999999999998753221    122 1


Q ss_pred             cCCCccEEEEecCcccccccccceE-EEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHH
Q 038416          206 FGSIVPVITLGSISKRWIVPGWRLG-WLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKI  283 (387)
Q Consensus       206 ~~~~~~~~~i~s~sK~~~~~g~r~G-~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~  283 (387)
                      ...   .+++.|+||.++.+|.++| ++++++        +.++.+..... .....+++.++.+..-+     +.+..+
T Consensus       196 ~g~---Divv~S~sK~~~g~g~~~GG~vv~~~--------~~~~~~~~~~~~~g~~~~~~~a~~~l~gl-----~tl~~R  259 (390)
T PRK08133        196 LGA---DVVIHSATKYLDGQGRVLGGAVVGSK--------ELMEEVFGFLRTAGPTLSPFNAWVFLKGL-----ETLSLR  259 (390)
T ss_pred             hCC---cEEEeecceeecCCcceEeEEEEcCH--------HHHHHHHHHHHHhCCCCCHHHHHHHHccc-----chHHHH
Confidence            122   3789999999988998885 455543        45565554433 33444554444332222     246777


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 038416          284 IGLLKETADICYERIKEIPCITCPVKP  310 (387)
Q Consensus       284 ~~~~~~~~~~~~~~l~~~~~~~~~~~~  310 (387)
                      .+++.+++..+.+.|++.|++..+.+|
T Consensus       260 ~~~~~~~a~~la~~L~~~p~v~~v~yp  286 (390)
T PRK08133        260 MEAHSANALALAEWLEAHPGVERVFYP  286 (390)
T ss_pred             HHHHHHHHHHHHHHHHhCCCeeEEECC
Confidence            778888899999999988766544444

>PRK14012 cysteine desulfurase; Provisional

Probab=99.95  E-value=8.1e-25  Score=204.88  Aligned_cols=328  Identities=15%  Similarity=0.140  Sum_probs=215.7

Q ss_pred             CCcHHHHHHHHHHhc--CCCCCCCC--C------CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc
Q 038416           25 SDSTVAEDAVVDALR--TAHYNCYS--P------TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA   94 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~--~~~~~~y~--~------~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~   94 (387)
                      |.|+.+.+++.+.+.  +...+...  .      .....++|+.+++++      +.+++++++++|++++++.++.++.
T Consensus        14 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~------g~~~~~v~~~~g~t~al~~~l~~l~   87 (404)
T PRK14012         14 PVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLI------GADPREIVFTSGATESDNLAIKGAA   87 (404)
T ss_pred             CCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHc------CcCcCeEEEeCCHHHHHHHHHHHHH
Confidence            688999999988875  22111110  0      012456678888877      4567889999999999999988764


Q ss_pred             ----CCCCeEEEcCCCCcchHHHhh-ccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHH
Q 038416           95 ----RPGANILIPRPGYPLYEIHAA-GSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQH  169 (387)
Q Consensus        95 ----~~g~~vl~~~p~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~  169 (387)
                          ++||.|+++.++|+++..... ....|.+++.++.+  .++.+|+++++++++++++++++++++||||..++   
T Consensus        88 ~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~--~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~---  162 (404)
T PRK14012         88 HFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQ--SNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQD---  162 (404)
T ss_pred             HhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccC--CCCcCCHHHHHHhcCCCCEEEEEECcCCCccchhh---
Confidence                789999999999987644333 00468898888875  34568999999999999999999999999999976   


Q ss_pred             HHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHH
Q 038416          170 LQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDS  249 (387)
Q Consensus       170 ~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~  249 (387)
                      +++|.++|+++|+++|+|++++.    +.....+.....+   +++.|++|.++..  ++|++++++.......|.....
T Consensus       163 ~~~I~~la~~~g~~vivD~a~~~----g~~~~~~~~~~~D---~~~~s~~K~~gp~--g~G~l~~~~~~~~~~~~~~~g~  233 (404)
T PRK14012        163 IAAIGEICRERGIIFHVDAAQSV----GKVPIDLSKLKVD---LMSFSAHKIYGPK--GIGALYVRRKPRVRLEAQMHGG  233 (404)
T ss_pred             HHHHHHHHHHcCCEEEEEcchhc----CCcccCcccCCCC---EEEEehhhccCCC--ceEEEEEecCCCCCCCceecCC
Confidence            78889999999999999999984    2222223333333   7778999976543  4899888763211111100000


Q ss_pred             HHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC----CceEEEEEecCcccc
Q 038416          250 IKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKP----QGAMFVMVKLNVSML  325 (387)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~g~~~~~~~~~~~~  325 (387)
                      -.......++++.....++.+++... +..+....++.+.+++++.+.|++++++.....+    .....+++.+.    
T Consensus       234 ~~~~~~~~gt~~~~~~~~l~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~----  308 (404)
T PRK14012        234 GHERGMRSGTLPTHQIVGMGEAARIA-KEEMATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYV----  308 (404)
T ss_pred             CccCCccCCCcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCc----
Confidence            00000012234444445555555432 2345566788888888999988887766532111    11223343332    


Q ss_pred             cCCCcHHHHHHHHHHhcCeEEEcCCccCC-------------------CCeEEEEee--CChHhHHHHHHHHHHHHHHhh
Q 038416          326 EDIGDDLEFCLKLAKEESVIILPGRTVGM-------------------KNWLRIAFA--AEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       326 ~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-------------------~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~  384 (387)
                          +..++...+ +  ++.+.+|..|..                   .+.+|++++  .+++|++.+++.|+++++.++
T Consensus       309 ----~~~~~~~~l-~--~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~~  381 (404)
T PRK14012        309 ----EGESLIMAL-K--DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKLR  381 (404)
T ss_pred             ----CHHHHHHhC-C--CeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence                223444433 3  676766654422                   368999995  589999999999999887764

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.95  E-value=8.7e-25  Score=202.28  Aligned_cols=289  Identities=14%  Similarity=0.141  Sum_probs=199.5

Q ss_pred             CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchH----HHhhccCCCceee
Q 038416           49 TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYE----IHAAGSNNNLEAR  124 (387)
Q Consensus        49 ~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~----~~~~~~~~g~~~~  124 (387)
                      .+...++++.++++++        .++.++++++++|+..++.+++++||+|+++.|+|.+..    ..+.  ..|+++.
T Consensus        63 ~p~~~~le~~lA~l~g--------~~~~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~--~~Gi~v~  132 (398)
T PRK08249         63 NPTVQAFEEKVRILEG--------AEAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLP--RMGVDVT  132 (398)
T ss_pred             ChHHHHHHHHHHHHhC--------CCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHh--hCCeEEE
Confidence            3567899999999983        356677777899999999999999999999999998753    3345  6788877


Q ss_pred             eeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcccc
Q 038416          125 HYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMG  204 (387)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~  204 (387)
                      .++.       .|++++++++++++++|++++|+||||.+++   +++|.++|+++|+++|+|++|+.....    .++.
T Consensus       133 ~vd~-------~d~e~l~~~i~~~tklV~ie~p~NPtg~v~d---l~~I~~la~~~gi~livD~t~a~~~~~----~~l~  198 (398)
T PRK08249        133 LCET-------GDHEQIEAEIAKGCDLLYLETPTNPTLKIVD---IERLAAAAKKVGALVVVDNTFATPINQ----NPLA  198 (398)
T ss_pred             EcCC-------CCHHHHHHhcCCCCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCcCccccC----Cchh
Confidence            6542       4889999999989999999999999999988   777888899999999999999854321    1221


Q ss_pred             ccCCCccEEEEecCcccccccccce-EEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHH
Q 038416          205 VFGSIVPVITLGSISKRWIVPGWRL-GWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAK  282 (387)
Q Consensus       205 ~~~~~~~~~~i~s~sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~  282 (387)
                       ...   .+++.|++|.++.+|.++ |++++++        +++++++..+. .+...+++.++.+...++.     +..
T Consensus       199 -~~~---Divv~S~sK~l~g~~~~~gG~vv~~~--------~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~t-----L~~  261 (398)
T PRK08249        199 -LGA---DLVIHSATKFLSGHADALGGVVCGSK--------ELMEQVYHYREINGATMDPMSAYLILRGMKT-----LKL  261 (398)
T ss_pred             -hCC---CEEeccCceecCCCCCceEEEEECCH--------HHHHHHHHHHHhcCCCCCHHHHHHHHhCcch-----HHH
Confidence             222   278899999988777665 5555533        67777776654 3445666666655544443     566


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCC----------------ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEE
Q 038416          283 IIGLLKETADICYERIKEIPCITCPVKPQ----------------GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVII  346 (387)
Q Consensus       283 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v  346 (387)
                      +.++..++++.+.+.|++.|.+..+.+|.                .|.++.+.+...    ......+++.+ +=..+.+
T Consensus       262 R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~~----~~~~~~f~~~l-~l~~~~~  336 (398)
T PRK08249        262 RVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKGG----MDTVKRLLPKL-RYAHRAA  336 (398)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcCC----HHHHHHHHHhC-CcceEcc
Confidence            77888889999999999876655444442                233455555310    00122333332 1111111


Q ss_pred             EcCCcc----------------------CC-CCeEEEEeeCChHhHHHHHHHHHHHHHHhhh
Q 038416          347 LPGRTV----------------------GM-KNWLRIAFAAEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       347 ~~g~~~----------------------~~-~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      .-|+..                      +. ++.+|+|++.  |+.+.+++.|.++++..++
T Consensus       337 s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl--E~~~dl~~dl~~al~~~~~  396 (398)
T PRK08249        337 NLGAVETIYGPARTTSHVENTLEERAALGIPEGLVRISVGI--EDTEDLIADLEQAFAHLES  396 (398)
T ss_pred             CCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHHHhhh
Confidence            111110                      00 2579999998  6778888888888877654

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.95  E-value=1.6e-24  Score=199.08  Aligned_cols=291  Identities=15%  Similarity=0.162  Sum_probs=203.9

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhh--ccCCCceeeeec
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAA--GSNNNLEARHYD  127 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~--~~~~g~~~~~~~  127 (387)
                      .....|++.+|++.        +.+++++++|+++|+..++.+++++||+|+++.|+|.+....+.  ....|+++..++
T Consensus        53 pt~~~Le~~lA~le--------g~e~ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd  124 (388)
T PRK08861         53 PNRGLLEQTLSELE--------SGKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVD  124 (388)
T ss_pred             chHHHHHHHHHHHh--------CCCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEEC
Confidence            56789999999998        35899999999999999999999999999999999986443221  003566776664


Q ss_pred             cCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccC
Q 038416          128 LLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFG  207 (387)
Q Consensus       128 ~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~  207 (387)
                      .       .|++++++++++++++|++++|+||||.+++   +++|.++|+++|+++|+|++|....+.    .++ .+.
T Consensus       125 ~-------~d~e~l~~~i~~~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~vIvDea~~~~~~~----~pl-~~G  189 (388)
T PRK08861        125 Q-------SDAAALDAALAKKPKLILLETPSNPLVRVVD---IAELCQKAKAVGALVAVDNTFLTPVLQ----KPL-ELG  189 (388)
T ss_pred             C-------CCHHHHHHhcCcCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCccccccC----CCc-ccC
Confidence            2       4789999999889999999999999999998   677888889999999999999864321    122 123


Q ss_pred             CCccEEEEecCcccccc-cccceEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHH
Q 038416          208 SIVPVITLGSISKRWIV-PGWRLGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIG  285 (387)
Q Consensus       208 ~~~~~~~i~s~sK~~~~-~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  285 (387)
                      .+   +++.|++|.++. .+...|++++.+       +++.+.++..+. .+...+++..+.+..-|+.     +.-+.+
T Consensus       190 aD---ivv~S~tK~l~G~~d~~gG~i~~~~-------~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~T-----l~lR~~  254 (388)
T PRK08861        190 AD---FVIHSTTKYINGHSDVIGGVLITKT-------KEHAEELAWWGNCIGATGTPFDSYMTLRGIRT-----LGARMR  254 (388)
T ss_pred             CC---EEEeecceeccCCCcceeEEEEecH-------HHHHHHHHHHHhccCCCCChHHHHHHHhcCCC-----HHHHHH
Confidence            33   899999999765 346788888754       246666665543 4566677776666555554     777888


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCC----------------ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcC
Q 038416          286 LLKETADICYERIKEIPCITCPVKPQ----------------GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPG  349 (387)
Q Consensus       286 ~~~~~~~~~~~~l~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g  349 (387)
                      +..+++..+.+.|+..|.+..+.+|.                .|.++.+.+...    ......+++.+ +=..+.+.-|
T Consensus       255 ~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~~----~~~~~~f~~~l-~l~~~~~s~G  329 (388)
T PRK08861        255 VHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAGS----FEQLKVFVKAL-ALFSLAESLG  329 (388)
T ss_pred             HHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCCC----HHHHHHHHhcC-CcceEccCCC
Confidence            88999999999999887665454542                233455555310    00122333322 2111112212


Q ss_pred             Ccc----------------------CC-CCeEEEEeeCChHhHHHHHHHHHHHHHHhhh
Q 038416          350 RTV----------------------GM-KNWLRIAFAAEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       350 ~~~----------------------~~-~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      +..                      +. ++.||+|++.  |+.+.+++.|.++++...+
T Consensus       330 ~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl--E~~~dli~Dl~~al~~~~~  386 (388)
T PRK08861        330 GVESLICHPASMTHRAMGEEALAEAGVSQQLLRLSVGL--EDAQDLIADLDQAFAKAAE  386 (388)
T ss_pred             CCcceeeCCCcccccccCHHHHHhcCCCCCeEEEEeCc--CCHHHHHHHHHHHHHHHHh
Confidence            110                      00 3579999999  6778888888888887665

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.95  E-value=7.3e-25  Score=201.85  Aligned_cols=294  Identities=16%  Similarity=0.155  Sum_probs=201.0

Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhh--ccCCC
Q 038416           43 YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAA--GSNNN  120 (387)
Q Consensus        43 ~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~--~~~~g  120 (387)
                      +..|+. .....|++.++++.        ..+++++++|+++|+..++.+++++||+|+++.|+|.+....+.  ....+
T Consensus        45 Y~R~~~-p~~~~le~~lA~l~--------g~~~v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~  115 (382)
T TIGR02080        45 YSRSGN-PTRDLLQQALAELE--------GGAGAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGC  115 (382)
T ss_pred             ccCCCC-chHHHHHHHHHHHh--------CCCcEEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcC
Confidence            445544 45688999999988        24689999999999999999999999999999999986544332  00334


Q ss_pred             ceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCC
Q 038416          121 LEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPY  200 (387)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~  200 (387)
                      .++..++       ..|++++++++++++++|++++|+||||.+++   +++|.++|+++|+++|+|++|..+...    
T Consensus       116 ~~v~~~d-------~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~----  181 (382)
T TIGR02080       116 FRVLFVD-------QGDEQALRAALAQKPKLVLIETPSNPLLRVVD---IAKICHLAKAVGAVVVVDNTFLSPALQ----  181 (382)
T ss_pred             eEEEEEC-------CCCHHHHHHhcCcCceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCcccccC----
Confidence            4554442       13789999999889999999999999999988   678888889999999999999864321    


Q ss_pred             ccccccCCCccEEEEecCccccc-ccccceEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHH
Q 038416          201 VPMGVFGSIVPVITLGSISKRWI-VPGWRLGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEA  278 (387)
Q Consensus       201 ~~~~~~~~~~~~~~i~s~sK~~~-~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~  278 (387)
                      .++. +..   .++++|++|.++ .++++.|++++.+       ++++++++..+. .+...+++..+.+..-++     
T Consensus       182 ~pl~-~ga---Divv~S~sK~l~G~~~~~~G~i~~~~-------~~~~~~l~~~~~~~g~~~sp~~a~l~lr~l~-----  245 (382)
T TIGR02080       182 NPLA-LGA---DLVLHSCTKYLNGHSDVIAGAVIAKD-------PQVAEELAWWANNLGVTGGAFDSYLTLRGLR-----  245 (382)
T ss_pred             Cchh-hCC---CEEEeecceeccCCCCceeEEEEeCC-------HHHHHHHHHHHHccCCCCCHHHHHHHHcccc-----
Confidence            1221 222   288899999975 5778999988754       257777766544 355666666555533333     


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----------------ceEEEEEecCcccccCCCcHHHHHHHHHHhc
Q 038416          279 FFAKIIGLLKETADICYERIKEIPCITCPVKPQ----------------GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEE  342 (387)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  342 (387)
                      .+..+.++..+++..+.+.|+..|.+..+.+|.                .|.++.+.+...    ......+++.+ +-.
T Consensus       246 tl~~R~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~----~~~~~~f~~~l-~~~  320 (382)
T TIGR02080       246 TLVARMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKGG----EQTVRRFLGGL-SLF  320 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecCc----HHHHHHHHHcC-Ccc
Confidence            366678888899999999999877665444442                244555566421    00122333333 221


Q ss_pred             CeEEEcCCcc----------------------CC-CCeEEEEeeCChHhHHHHHHHHHHHHHH
Q 038416          343 SVIILPGRTV----------------------GM-KNWLRIAFAAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       343 gi~v~~g~~~----------------------~~-~~~~Ri~~~~~~e~~~~~~~~l~~~~~~  382 (387)
                      .+.+.-|+..                      +. ++.+|+|++.  |+.+.+++.|.++++.
T Consensus       321 ~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl--E~~~dl~~dl~~al~~  381 (382)
T TIGR02080       321 TLAESLGGVESLIAHPATMTHAAMGPEARAEAGISDTLLRLSVGL--EDADDLIADLEQGLRA  381 (382)
T ss_pred             eEeccCCCCcceeECCCccCcccCCHHHHHhcCCCcCeEEEEecc--CCHHHHHHHHHHHHhh
Confidence            2222222111                      00 3579999998  5677788888887763

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.95  E-value=1e-24  Score=194.63  Aligned_cols=331  Identities=18%  Similarity=0.193  Sum_probs=242.8

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCC-CCEEEcCChHHHHHHHHHhhcCCCCeEEE
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSP-EDVYLTLGCSQAIEISLSVLARPGANILI  102 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~g~~vl~  102 (387)
                      .+.++.++++|....    .+++++  .+..+-+.+.+.++..++  ++. +-++++++++.++++++.++++|||+|++
T Consensus        14 ~~v~~~V~~am~~~~----~~h~s~--~F~~~~~~~~~~L~~v~~--t~~~~~~ll~gsGt~amEAav~sl~~pgdkVLv   85 (383)
T COG0075          14 VPVPPRVLLAMARPM----VGHRSP--DFVGIMKEVLEKLRKVFG--TENGDVVLLSGSGTLAMEAAVASLVEPGDKVLV   85 (383)
T ss_pred             CCCCHHHHHHhcCCC----CCCCCH--HHHHHHHHHHHHHHHHhc--CCCCcEEEEcCCcHHHHHHHHHhccCCCCeEEE
Confidence            368888887776644    334443  344555555555554444  233 55667888999999999999999999999


Q ss_pred             cCCCCcc--hHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc--CceEEEEeCCCCCccccCCHHHHHHHHHHHH
Q 038416          103 PRPGYPL--YEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE--NTVAIVIINPGNPCGNVFSYQHLQKIARTAR  178 (387)
Q Consensus       103 ~~p~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~  178 (387)
                      ...+.++  +.++++  .+|.++..+..  +.+..++++++++++++  +.+.|.+++...+||+..|   +++|+++|+
T Consensus        86 ~~nG~FG~R~~~ia~--~~g~~v~~~~~--~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnp---l~~I~~~~k  158 (383)
T COG0075          86 VVNGKFGERFAEIAE--RYGAEVVVLEV--EWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNP---LKEIAKAAK  158 (383)
T ss_pred             EeCChHHHHHHHHHH--HhCCceEEEeC--CCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCc---HHHHHHHHH
Confidence            9888875  678889  99999998876  46668999999999984  5678999999999999965   899999999


Q ss_pred             hcCcEEeecccccccccCCCCCccccccCCCccEEEEecCccccc-ccccceEEEEeeCCC-----------CcccchhH
Q 038416          179 NLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWI-VPGWRLGWLVTSDPN-----------GILQNSGF  246 (387)
Q Consensus       179 ~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~-~~g~r~G~i~~~~~~-----------~~~~~~~~  246 (387)
                      +||.++|+|.+.+.   ++. ...+..+   +-.+++++..|+++ .||  +|.+..++..           ..+.-..+
T Consensus       159 ~~g~l~iVDaVsS~---Gg~-~~~vd~w---giDv~itgSQK~l~~PPG--la~v~~S~~a~e~~~~~~~~~~ylDL~~~  229 (383)
T COG0075         159 EHGALLIVDAVSSL---GGE-PLKVDEW---GIDVAITGSQKALGAPPG--LAFVAVSERALEAIEERKHPSFYLDLKKW  229 (383)
T ss_pred             HcCCEEEEEecccC---CCc-ccchhhc---CccEEEecCchhccCCCc--cceeEECHHHHHHHhcCCCCceeecHHHH
Confidence            99999999999984   232 2223333   33488888999986 466  6777765422           11100122


Q ss_pred             HHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC--ceEEEEEecCccc
Q 038416          247 VDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ--GAMFVMVKLNVSM  324 (387)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~g~~~~~~~~~~~  324 (387)
                      .+.+.+...+.++++.....++..+|+...++.++.+.++++++.+.+++.++.+ |++.+..+.  ......+..|.. 
T Consensus       230 ~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~al-Gl~~~~~~~~~s~tvta~~~P~g-  307 (383)
T COG0075         230 LKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEAL-GLELFADPERRSPTVTAIKVPEG-  307 (383)
T ss_pred             HHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCccccCcccCCCceEEEECCCC-
Confidence            2222222345678888889999999988778889999999999999999999998 788553221  111223334431 


Q ss_pred             ccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe-e-CChHhHHHHHHHHHHHHHHhh
Q 038416          325 LEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF-A-AEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       325 ~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~-~-~~~e~~~~~~~~l~~~~~~~~  384 (387)
                          .++.+....+++++|+.+.+|.....+..|||+. + .+.+++..++.+|+.+++++.
T Consensus       308 ----~~~~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g  365 (383)
T COG0075         308 ----VDDKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMGNVRPEDVLAALAALEAALRELG  365 (383)
T ss_pred             ----CCcHHHHHHHHHhCCEEecccccccCccEEEEecCccCCHHHHHHHHHHHHHHHHHcC
Confidence                2344555578888899999988777789999999 4 578999999999999998864

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.95  E-value=6.2e-25  Score=190.88  Aligned_cols=310  Identities=23%  Similarity=0.295  Sum_probs=198.8

Q ss_pred             CCCC-CCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHH-HHHHHH-hhc----C--------CCCeEEEcCCCC
Q 038416           43 YNCY-SPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQA-IEISLS-VLA----R--------PGANILIPRPGY  107 (387)
Q Consensus        43 ~~~y-~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a-~~~~~~-~l~----~--------~g~~vl~~~p~~  107 (387)
                      ..+| +...|.+++|+..++++      ++++++|++..+++-. +.-++. +++    .        +.-+.++|.|+|
T Consensus        61 ~RNY~G~l~Gipe~r~l~a~ll------gv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGY  134 (425)
T PF12897_consen   61 CRNYPGGLDGIPEARELFAELL------GVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGY  134 (425)
T ss_dssp             TTSS-S-SS--HHHHHHHHHHH------TS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--
T ss_pred             ccCCCCccCChHHHHHHHHHHh------CCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCc
Confidence            3588 77889999999999999      6899999988666533 332222 221    1        123789999999


Q ss_pred             cchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc--cCceEEEEeCC--CCCccccCCHHHHHHHHHH-HHhcCc
Q 038416          108 PLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD--ENTVAIVIINP--GNPCGNVFSYQHLQKIART-ARNLGI  182 (387)
Q Consensus       108 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~v~l~~p--~nptG~~~~~~~~~~l~~~-~~~~~~  182 (387)
                      .....+.+  .+|++++.+|+.++   ++|.+.+++++.  +..|.+| |.|  +||||+++|.+-+++++.+ +...++
T Consensus       135 DRHFai~E--~~Giemi~VpM~~d---GPDmD~Ve~LV~~D~svKGiW-cVP~ySNPtG~tySde~vrrlA~m~~AA~DF  208 (425)
T PF12897_consen  135 DRHFAITE--HFGIEMIPVPMTED---GPDMDMVEELVAEDPSVKGIW-CVPKYSNPTGITYSDEVVRRLAAMKTAAPDF  208 (425)
T ss_dssp             HHHHHHHH--HCT-EEEEEEEETT---EE-HHHHHHHTHTSTTEEEEE-E-SSS-TTT-----HHHHHHHHHS--SSTT-
T ss_pred             hHHHHHHH--hhCcEEEecCCCCC---CCCHHHHHHHHhcCCccceEE-eCCCccCCCCccCCHHHHHHHhcCCcCCcCe
Confidence            99999999  99999999998654   689999999873  4456664 555  8999999999999999987 446799


Q ss_pred             EEeeccccccccc-CCCCCc---cc----cccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhh
Q 038416          183 IVIADEVYNHLAF-GSTPYV---PM----GVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL  254 (387)
Q Consensus       183 ~li~D~~~~~~~~-~~~~~~---~~----~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~  254 (387)
                      .|+-|++|....+ ...+..   .+    ..-...++++...|+||. .++|..++++.++.        +-++++.+..
T Consensus       209 RI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKI-Tf~GaGva~~aaS~--------~Nl~~~~~~~  279 (425)
T PF12897_consen  209 RIFWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKI-TFPGAGVAFFAASE--------ANLAWIKKHL  279 (425)
T ss_dssp             EEEEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTT-S-TTSS-EEEEE-H--------HHHHHHHHHH
T ss_pred             EEEeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEeccccc-ccCCcceeeeecCH--------HHHHHHHHHh
Confidence            9999999997655 222211   11    223456789999999999 89999999999976        6777777765


Q ss_pred             h-ccCCcchHHHHHHHHHhhhcc---HHHHHHHHHHHHHHHHHHHHHhhc-CC---CCCCCCCCCceEEEEEecCccccc
Q 038416          255 N-AASHPVTFIQAAVPRIVDETN---EAFFAKIIGLLKETADICYERIKE-IP---CITCPVKPQGAMFVMVKLNVSMLE  326 (387)
Q Consensus       255 ~-~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~l~~-~~---~~~~~~~~~~g~~~~~~~~~~~~~  326 (387)
                      . .+-++....|..-..++.+.+   ..++++..+.++-..+...+.|++ +.   ++..|+.|.+|+|+++.+..    
T Consensus       280 ~~~tIgpdKvNQLRHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~----  355 (425)
T PF12897_consen  280 SVQTIGPDKVNQLRHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLD----  355 (425)
T ss_dssp             HHH-S---HHHHHHHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEEST----
T ss_pred             cCceeCccHHHHHHHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCC----
Confidence            3 567889999999999988743   355666666666666666666654 43   46558899999999988764    


Q ss_pred             CCCcHHHHHHHHHHhcCeEEEc-CCccCC-----CCeEEEEeeC-ChHhHHHHHHHHHHHH
Q 038416          327 DIGDDLEFCLKLAKEESVIILP-GRTVGM-----KNWLRIAFAA-EPATLEDGLERIKAFC  380 (387)
Q Consensus       327 ~~~~~~~~~~~ll~~~gi~v~~-g~~~~~-----~~~~Ri~~~~-~~e~~~~~~~~l~~~~  380 (387)
                         ....-+.+++++.||.+.| |..|..     +..|||+++. +.++++.+++.+.-++
T Consensus       356 ---G~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~cv  413 (425)
T PF12897_consen  356 ---GTAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATCV  413 (425)
T ss_dssp             ---T-HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHHH
T ss_pred             ---ChHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHHH
Confidence               3445667788999999998 655533     4689999976 6799999999886655

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.95  E-value=1.9e-24  Score=199.17  Aligned_cols=296  Identities=18%  Similarity=0.169  Sum_probs=205.4

Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhh-c-cCCC
Q 038416           43 YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAA-G-SNNN  120 (387)
Q Consensus        43 ~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~-~-~~~g  120 (387)
                      +..|+. .....|++.+|++.+        .+++++++|+++++..++.+++++||+|+++.|+|++....+. . ...+
T Consensus        46 Y~R~~~-pt~~~L~~~lA~l~g--------~~~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~g  116 (386)
T PRK08045         46 YSRRGN-PTRDVVQRALAELEG--------GAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGC  116 (386)
T ss_pred             eeCCCC-ccHHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCC
Confidence            334444 467899999999873        3479999999999999999999999999999999986433222 0 0234


Q ss_pred             ceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCC
Q 038416          121 LEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPY  200 (387)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~  200 (387)
                      .++..++       ..|++++++++++++++|++++|+||||.+++   +++|.++|+++|+++|+|++|.....    .
T Consensus       117 i~v~~vd-------~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~d---i~~I~~ia~~~g~~vivDeay~~~~~----~  182 (386)
T PRK08045        117 YRVLFVD-------QGDEQALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREAGAVSVVDNTFLSPAL----Q  182 (386)
T ss_pred             eEEEEeC-------CCCHHHHHHhcccCCeEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCcccc----C
Confidence            4555443       24789999999889999999999999999988   67888888899999999999986432    1


Q ss_pred             ccccccCCCccEEEEecCccccc-ccccceEEEEeeCCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccHH
Q 038416          201 VPMGVFGSIVPVITLGSISKRWI-VPGWRLGWLVTSDPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNEA  278 (387)
Q Consensus       201 ~~~~~~~~~~~~~~i~s~sK~~~-~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~  278 (387)
                      .++ ....+   +++.|++|.++ .++...|++++.+       +++.+.++... ..+...+++.++.+...|+.    
T Consensus       183 ~pl-~~gaD---ivv~S~tK~l~G~~d~~~G~vi~~~-------~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl~t----  247 (386)
T PRK08045        183 NPL-ALGAD---LVLHSCTKYLNGHSDVVAGVVIAKD-------PDVVTELAWWANNIGVTGGAFDSYLLLRGLRT----  247 (386)
T ss_pred             Cch-hhCCC---EEEeecceeccCCCCceeEEEEeCc-------HHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcc----
Confidence            222 12222   88999999985 5667889988754       25666666543 35566788888877777765    


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----------------ceEEEEEecCcccccCCCcHHHHHHHHHHhc
Q 038416          279 FFAKIIGLLKETADICYERIKEIPCITCPVKPQ----------------GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEE  342 (387)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  342 (387)
                       +..+.+++.+++..+.+.|+..|.+..+.+|.                .|.++.+.+...    ......+++.| +=.
T Consensus       248 -l~~R~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~~----~~~~~~f~~~l-~~~  321 (386)
T PRK08045        248 -LVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD----EQTLRRFLGGL-SLF  321 (386)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecCc----HHHHHHHHHhc-cce
Confidence             78889999999999999999887665444442                233455555320    00122343333 211


Q ss_pred             CeEEEcCCcc----------------------CC-CCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          343 SVIILPGRTV----------------------GM-KNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       343 gi~v~~g~~~----------------------~~-~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      .+.+.-|+..                      +. ++.+|+|++.  |+.+.+++.|.++++...
T Consensus       322 ~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl--E~~~dl~~dl~~al~~~~  384 (386)
T PRK08045        322 TLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI--EDGEDLIADLENGFRAAN  384 (386)
T ss_pred             eEeccCCCCceeEeCCCCcccccCCHHHHHhcCCCCCeEEEEeCc--CCHHHHHHHHHHHHHHhh
Confidence            1121112111                      00 3579999999  567788888888887654

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.95  E-value=6.1e-25  Score=201.69  Aligned_cols=331  Identities=13%  Similarity=0.108  Sum_probs=214.3

Q ss_pred             cccccccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCCh
Q 038416            3 ERKGQETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGC   82 (387)
Q Consensus         3 ~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~   82 (387)
                      ++.|-..++|. .|..+..-.-.+|+.+.++|+++..+     |.   +..++++++.+++.+.+|    .+++++++|+
T Consensus         3 ~~~~~~~~ina-~g~~t~~g~s~~~~~v~~a~~~~~~~-----~~---~~~~~~~~~~~~~a~~~g----~~~~~~~~g~   69 (363)
T TIGR01437         3 EKYGLKKVINA-SGKMTILGVSTVSDEVADAQKRGAQN-----YF---EIKELVNKTGEYIANLLG----VEDAVIVSSA   69 (363)
T ss_pred             ccCCCceEEEC-CcEeecCCCCCCCHHHHHHHHHHHhc-----CC---CHHHHHHHHHHHHHHhhC----CCeEEEEcCH
Confidence            34455555665 23322222335899999999998642     22   235667777777666544    3578999999


Q ss_pred             HHHHHHHHHhhcCCCC---------------eEEEcCCCCcch----HHHhhccCCCceeeeeccCCCCCccCChhhHHH
Q 038416           83 SQAIEISLSVLARPGA---------------NILIPRPGYPLY----EIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEA  143 (387)
Q Consensus        83 ~~a~~~~~~~l~~~g~---------------~vl~~~p~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~  143 (387)
                      |+|+.+++.+++++||               .|+++.|.|..|    ...+.  ..|.+++.++.    ++.+|++++++
T Consensus        70 t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~--~~g~~~v~v~~----~~~~d~~~le~  143 (363)
T TIGR01437        70 SAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVR--LGGGKVVEAGY----ANECSAEQLEA  143 (363)
T ss_pred             HHHHHHHHHHHhcCCCcchhhcccccccccceEEEECccchhcCCchHHHHH--hcCCeEEEEcC----CCCCCHHHHHH
Confidence            9999999999999888               899988777655    45666  78989888875    23589999999


Q ss_pred             hhccCceEEE-EeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccc
Q 038416          144 LADENTVAIV-IINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRW  222 (387)
Q Consensus       144 ~~~~~~~~v~-l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~  222 (387)
                      +++++|++++ +++|+||+|...+   +++|+++|+++|+++|+|++|+.   .   ......+..   .+++.|++|++
T Consensus       144 ai~~~t~ai~~v~~~~~~~g~~~~---~~~i~~~a~~~gi~vivD~a~~~---~---~~~~~~~g~---D~~~~S~~K~l  211 (363)
T TIGR01437       144 AITEKTAAILYIKSHHCVQKSMLS---VEDAAQVAQEHNLPLIVDAAAEE---D---LQKYYRLGA---DLVIYSGAKAI  211 (363)
T ss_pred             hcChhceEEEEEecCCCCcCCcCC---HHHHHHHHHHcCCeEEEECCCCC---c---hHHHHHcCC---CEEEEeCCccc
Confidence            9999999776 5678999999888   67789999999999999999972   1   111112222   37789999974


Q ss_pred             cccccceEEEEeeCCCCcccchhHHHHHHhhhhcc---CCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhh
Q 038416          223 IVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAA---SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIK  299 (387)
Q Consensus       223 ~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  299 (387)
                        .|++.|+++.++        ++++.++......   .........++.++++... ....+..+...++++.+.+.|.
T Consensus       212 --~gp~~G~l~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~-~~~~~~~~~~~~~~~~l~~~L~  280 (363)
T TIGR01437       212 --EGPTSGLVLGKK--------KYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYL-STGKESGAEMVAKLTPFIEALN  280 (363)
T ss_pred             --CCCceEEEEEcH--------HHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHH-ccCcccHHHHHHHHHHHHHHHh
Confidence              577899998754        5666654322110   1111122233333333211 1122333344456677889999


Q ss_pred             cCCCCCCCCCCC-ceE---EEEEecCcccccCCCcHHHHHHHHHHhcC--eEEEcCCccCCCCeEEEEe-eCChHhHHHH
Q 038416          300 EIPCITCPVKPQ-GAM---FVMVKLNVSMLEDIGDDLEFCLKLAKEES--VIILPGRTVGMKNWLRIAF-AAEPATLEDG  372 (387)
Q Consensus       300 ~~~~~~~~~~~~-~g~---~~~~~~~~~~~~~~~~~~~~~~~ll~~~g--i~v~~g~~~~~~~~~Ri~~-~~~~e~~~~~  372 (387)
                      ++|++.+...+. .+.   ..-+.++... .+ .+..++...| ++++  |.+.+  .+...+.+|+++ ..+++|++.+
T Consensus       281 ~i~g~~~~~~~~~~~~~~~~~~v~~~~~~-~g-~~~~~l~~~L-~~~~~~I~~r~--~~~~~~~~~l~~~~~~~~e~~~~  355 (363)
T TIGR01437       281 TLKGVSASIVQDEAGRDIARAEIRFDESE-LG-MTAADVVQAL-RQGEPAIYTRG--YKANEGIIEIDPRSVTGGQLDII  355 (363)
T ss_pred             cCCCeEEEEecCCCCCcCceEEEEEeccC-CC-CCHHHHHHHH-hcCCCCEEEee--eeecCCeEEEEeecCCHHHHHHH
Confidence            988887432111 111   1112232110 01 2456676666 5556  55554  355577899999 4578999999


Q ss_pred             HHHHHHHH
Q 038416          373 LERIKAFC  380 (387)
Q Consensus       373 ~~~l~~~~  380 (387)
                      +++|++++
T Consensus       356 ~~~l~~~~  363 (363)
T TIGR01437       356 VERIREIV  363 (363)
T ss_pred             HHHHHHhC
Confidence            99998753

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.94  E-value=1.7e-24  Score=199.71  Aligned_cols=282  Identities=17%  Similarity=0.129  Sum_probs=201.0

Q ss_pred             CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHH----HhhccCCCceee
Q 038416           49 TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEI----HAAGSNNNLEAR  124 (387)
Q Consensus        49 ~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~----~~~~~~~g~~~~  124 (387)
                      .....+|++.++++.+        .++.++++++++|+..++.+++++||+|+++.+.|++...    .+.  ..|.++.
T Consensus        39 ~p~~~~le~~la~l~g--------~~~a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~--~~g~~~~  108 (369)
T cd00614          39 NPTVDALEKKLAALEG--------GEAALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLP--KLGIEVT  108 (369)
T ss_pred             ChhHHHHHHHHHHHHC--------CCCEEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHh--hcCeEEE
Confidence            4567899999999882        3577888889999999999999999999999999987653    344  6788887


Q ss_pred             eeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcccc
Q 038416          125 HYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMG  204 (387)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~  204 (387)
                      .++.+       |++++++++++++++|++.+|+||+|.+.+   +++|.++|+++|+++|+|++|+...+    ..++ 
T Consensus       109 ~v~~~-------d~~~l~~~i~~~~~~v~~e~~~np~g~~~d---l~~i~~la~~~g~~livD~t~~~~~~----~~~~-  173 (369)
T cd00614         109 FVDPD-------DPEALEAAIKPETKLVYVESPTNPTLKVVD---IEAIAELAHEHGALLVVDNTFATPYL----QRPL-  173 (369)
T ss_pred             EeCCC-------CHHHHHHhcCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcchhc----CChh-
Confidence            77642       588999999889999999999999999987   78889999999999999999986432    1111 


Q ss_pred             ccCCCccEEEEecCcccccccc-cceEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHH
Q 038416          205 VFGSIVPVITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAK  282 (387)
Q Consensus       205 ~~~~~~~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~  282 (387)
                      .+   +..+++.|++|.++.+| .+.|++++++       .+++++++.... .+...+++..+++...++.     +..
T Consensus       174 ~~---g~Divv~S~tK~l~g~~~~~gG~v~~~~-------~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~t-----l~~  238 (369)
T cd00614         174 EL---GADIVVHSATKYIGGHSDVIAGVVVGSG-------EALIQRLRFLRLALGTILSPFDAWLLLRGLKT-----LPL  238 (369)
T ss_pred             hh---CCcEEEeccceeccCCCCceEEEEEeCc-------HHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCC-----HHH
Confidence            12   23488999999987665 7889999854       146777776543 4455666666655444543     566


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCC----------------CceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEE
Q 038416          283 IIGLLKETADICYERIKEIPCITCPVKP----------------QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVII  346 (387)
Q Consensus       283 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v  346 (387)
                      +.++..++++.+.+.|++.|.+..+.+|                ..|.++.+.+..        +.+.+..++..-.+..
T Consensus       239 r~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~--------~~~~~~~f~~~l~~~~  310 (369)
T cd00614         239 RMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKG--------GLEAAKKFLNALKLFS  310 (369)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCC--------CHHHHHHHHHcCCcce
Confidence            7788888999999999998766544444                235566666641        1122233333333321


Q ss_pred             ---EcCCcc----------------------CC-CCeEEEEeeCChHhHHHHHHHHHHHH
Q 038416          347 ---LPGRTV----------------------GM-KNWLRIAFAAEPATLEDGLERIKAFC  380 (387)
Q Consensus       347 ---~~g~~~----------------------~~-~~~~Ri~~~~~~e~~~~~~~~l~~~~  380 (387)
                         +-|+..                      +. ++.+|+|++.  |+.+.+++.|.+++
T Consensus       311 ~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~liR~svGl--E~~~dl~~dl~~al  368 (369)
T cd00614         311 LAVSLGGVESLVEHPASMTHSQLPPEERAAAGITPGLVRLSVGI--EDVEDLIADLEQAL  368 (369)
T ss_pred             EcccCCCCceeeeCCcccccccCCHHHHHhcCCCCCeEEEEeCc--CCHHHHHHHHHHhh
Confidence               111110                      11 3579999999  67788888887765

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.94  E-value=3.2e-24  Score=198.78  Aligned_cols=220  Identities=18%  Similarity=0.195  Sum_probs=164.1

Q ss_pred             CcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcc----hHHHhhccCCCceeeee
Q 038416           51 GVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPL----YEIHAAGSNNNLEARHY  126 (387)
Q Consensus        51 ~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~----~~~~~~~~~~g~~~~~~  126 (387)
                      ....|++.++++.+      .  ++.++++++++++..++.+++++||+|+++.|.|.+    +...+.  ..|.++..+
T Consensus        61 ~~~~Le~~lA~l~g------~--~~~v~~~sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~--~~g~~v~~v  130 (405)
T PRK08776         61 TRDLLGEALAELEG------G--AGGVITATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAK--KGHFALITA  130 (405)
T ss_pred             HHHHHHHHHHHHhC------C--CceEEEcCHHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHH--hcCcEEEEE
Confidence            45678888888762      2  334566667899999999999999999999999987    344455  567777776


Q ss_pred             ccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcccccc
Q 038416          127 DLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF  206 (387)
Q Consensus       127 ~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~  206 (387)
                      +.       .|++++++++++++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|....    ...++. +
T Consensus       131 ~~-------~d~~~l~~~i~~~tklV~l~~P~NPtG~v~d---l~~I~~la~~~gi~vIvD~a~a~~~----~~~pl~-~  195 (405)
T PRK08776        131 DL-------TDPRSLADALAQSPKLVLIETPSNPLLRITD---LRFVIEAAHKVGALTVVDNTFLSPA----LQKPLE-F  195 (405)
T ss_pred             CC-------CCHHHHHHhcCcCCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCCcccc----cCCccc-c
Confidence            54       3789999999889999999999999999955   8899999999999999999998522    122332 2


Q ss_pred             CCCccEEEEecCccccccc-ccceEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHH
Q 038416          207 GSIVPVITLGSISKRWIVP-GWRLGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKII  284 (387)
Q Consensus       207 ~~~~~~~~i~s~sK~~~~~-g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  284 (387)
                      ..+   +++.|.+|.++.+ +...|++++++       +++.+++..... .+..++++..+.+...+     ++++.+.
T Consensus       196 gaD---ivv~S~tK~l~g~~~~~~G~vv~~~-------~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl-----~tl~~r~  260 (405)
T PRK08776        196 GAD---LVLHSTTKYINGHSDVVGGAVVARD-------AELHQQLVWWANALGLTGSPFDAFLTLRGL-----RTLDARL  260 (405)
T ss_pred             cCC---EEEecCceeecCCCCceEEEEEeCC-------HHHHHHHHHHHHhcCCCCCHHHHHHHHhhh-----CcHHHHH
Confidence            222   8899999998755 57789888754       256666655433 34456676666665444     3478899


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCC
Q 038416          285 GLLKETADICYERIKEIPCITCPVKP  310 (387)
Q Consensus       285 ~~~~~~~~~~~~~l~~~~~~~~~~~~  310 (387)
                      ++..+++..+.+.|++.|.+..+.+|
T Consensus       261 ~~~~~na~~la~~L~~~p~v~~V~yP  286 (405)
T PRK08776        261 RVHQENADAIAALLDGHAAVNQVYYP  286 (405)
T ss_pred             HHHHHHHHHHHHHHHcCCCeeEEECC
Confidence            99999999999999987765544443

>PRK06460 hypothetical protein; Provisional

Probab=99.94  E-value=2.1e-24  Score=198.80  Aligned_cols=287  Identities=15%  Similarity=0.130  Sum_probs=190.4

Q ss_pred             CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCc----chHHHhhccCCCceee
Q 038416           49 TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYP----LYEIHAAGSNNNLEAR  124 (387)
Q Consensus        49 ~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~----~~~~~~~~~~~g~~~~  124 (387)
                      .....+|++.++++++      .+ ..+++ +++++++..++.+++++||+|+++.|.|.    .+...++  ..|.++.
T Consensus        44 ~p~~~~L~~~lA~l~g------~~-~~v~~-~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~--~~G~~v~  113 (376)
T PRK06460         44 NPTVLELTKKIVELEN------AE-MGVAF-SSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLK--NWGVNVD  113 (376)
T ss_pred             CccHHHHHHHHHHHhC------CC-cEEEe-CCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHH--hhCcEEE
Confidence            4578999999999983      22 34444 55678999999999999999999987664    3445667  7898888


Q ss_pred             eeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcccc
Q 038416          125 HYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMG  204 (387)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~  204 (387)
                      .++..       +.+.+++.+++++++|++++|+||||.+++   +++|.++|+++|+++|+|++|+... .   ..++ 
T Consensus       114 ~~~~~-------~~~~l~~~~~~~tklV~l~sp~NPtG~v~d---~~~I~~la~~~g~~vivDea~~~~~-~---~~~l-  178 (376)
T PRK06460        114 ASNPG-------SDNIIEKAKSKRYDVVFVENITNPLLRVVD---ITELSKVCKENGSILIVDATFSTPI-N---QKPL-  178 (376)
T ss_pred             EECCC-------CHHHHHHhcCCCceEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcCccc-c---CChh-
Confidence            77642       223455555778999999999999999998   4567888899999999999997531 1   1111 


Q ss_pred             ccCCCccEEEEecCcccccc-cccceEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHH
Q 038416          205 VFGSIVPVITLGSISKRWIV-PGWRLGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAK  282 (387)
Q Consensus       205 ~~~~~~~~~~i~s~sK~~~~-~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~  282 (387)
                        . .+..+++.|+||.++. .+.+.||+++++        ++++++++... .+.+.++..   +..++.  ...+++.
T Consensus       179 --~-~~~divv~S~sK~l~G~~~~~~G~~~~~~--------~l~~~l~~~~~~~g~~~~~~~---a~~~l~--~~~~l~~  242 (376)
T PRK06460        179 --E-LGADIVVHSASKFLAGHNDVIAGLAAGYG--------KLLNVIDQMRRTLGTSLDPHA---AYLTLR--GIKTLKI  242 (376)
T ss_pred             --h-cCCCEEEeecceeccCCCCceEEEEecCH--------HHHHHHHHHHHhcCCCCCHHH---HHHHHh--chhhHHH
Confidence              1 1235889999999753 236799998865        67888876543 333333322   222222  2466788


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCC----------------CceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEE
Q 038416          283 IIGLLKETADICYERIKEIPCITCPVKP----------------QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVII  346 (387)
Q Consensus       283 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v  346 (387)
                      +.+++.++++.+.+.|++.|.+..+.+|                ..|.++.+.+...    ......+++.+ +-..+.+
T Consensus       243 r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~~----~~~~~~~~~~l-~~~~~~~  317 (376)
T PRK06460        243 RMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGG----QESALKVMKSL-KLIIPAQ  317 (376)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCc----HHHHHHHHHhC-Ccceecc
Confidence            8999999999999999988766545454                2344555566421    01122333332 1101111


Q ss_pred             E----------cCCc----c--------CC-CCeEEEEeeCChHhHHHHHHHHHHHHHHh
Q 038416          347 L----------PGRT----V--------GM-KNWLRIAFAAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       347 ~----------~g~~----~--------~~-~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      .          |...    +        +. ++.+|+|++.  |+.+.+++.|.+++..+
T Consensus       318 s~Gg~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl--E~~~dl~~dl~~al~~~  375 (376)
T PRK06460        318 TLGGVNSVISHPATMSHRTLSLEERKIVGITDSLLRLSVGI--EDVNDLIEDLDRALSTL  375 (376)
T ss_pred             CCCCCceEEeCccccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHHhh
Confidence            1          1100    0        01 3579999999  67777888888888654

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.94  E-value=3.3e-24  Score=199.13  Aligned_cols=220  Identities=19%  Similarity=0.208  Sum_probs=164.1

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchH----HHhhccCCCceeee
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYE----IHAAGSNNNLEARH  125 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~----~~~~~~~~g~~~~~  125 (387)
                      ....+|++.++++++        .++.+++++++.|+..++.+++++||+|+++.|.|....    ..+.  ..|+++..
T Consensus        65 p~~~~le~~lA~l~g--------~~~~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~--~~G~~v~~  134 (403)
T PRK07503         65 PTLALLEQRMASLEG--------GEAAVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLG--EFGVTVRH  134 (403)
T ss_pred             chHHHHHHHHHHHhC--------CCcEEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHh--hCCEEEEE
Confidence            457899999999883        234677778889999999999999999999999987532    3445  68888888


Q ss_pred             eccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccc
Q 038416          126 YDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV  205 (387)
Q Consensus       126 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~  205 (387)
                      ++..       |++++++++++++++|++++|+||+|...+   +++|.++|+++|+++|+|++|+.... +   .++. 
T Consensus       135 vd~~-------d~~~l~~~i~~~tklV~le~p~NPtG~~~d---i~~I~~la~~~gi~lIvD~a~a~~~~-~---~~l~-  199 (403)
T PRK07503        135 VDLT-------DPAALKAAISDKTRMVYFETPANPNMRLVD---IAAVAEIAHGAGAKVVVDNTYCTPYL-Q---RPLE-  199 (403)
T ss_pred             eCCC-------CHHHHHHhcCccCcEEEEeCCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCccccc-C---Cchh-
Confidence            7652       689999999889999999999999999976   78888999999999999999985422 1   1221 


Q ss_pred             cCCCccEEEEecCcccccccc-cceEEEEeeCCCCcccchhHHHHHHhh--hh-ccCCcchHHHHHHHHHhhhccHHHHH
Q 038416          206 FGSIVPVITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGFVDSIKGC--LN-AASHPVTFIQAAVPRIVDETNEAFFA  281 (387)
Q Consensus       206 ~~~~~~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~l~~~~~~~~~  281 (387)
                      +..   .+++.|++|.++.+| .+.|+++.++        +++++++..  .. .+..++++.++.+...|+     .+.
T Consensus       200 ~g~---Di~v~S~tK~l~g~gd~~gG~v~~~~--------~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~-----tl~  263 (403)
T PRK07503        200 LGA---DLVVHSATKYLGGHGDITAGLVVGGK--------ALADRIRLEGLKDMTGAVMSPFDAFLLMRGLK-----TLA  263 (403)
T ss_pred             hCC---CEEEccccccccCCCceeEEEEEcCH--------HHHHHHHhhhHHhCcCCCCCHHHHHHHHcCcc-----hHH
Confidence            222   388999999998765 7788888543        677777633  22 344556655555544443     366


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 038416          282 KIIGLLKETADICYERIKEIPCITCPVKP  310 (387)
Q Consensus       282 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  310 (387)
                      .+.++..+++..+.+.|++.|.+..+.+|
T Consensus       264 ~r~~~~~~na~~~a~~L~~~p~v~~V~~P  292 (403)
T PRK07503        264 LRMDRHCASAQAVAEWLARHPAVELVHYP  292 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCccEEECC
Confidence            67777778888888899887765544333

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.94  E-value=2.8e-24  Score=199.23  Aligned_cols=226  Identities=17%  Similarity=0.172  Sum_probs=172.0

Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcc----hHHHhhccC
Q 038416           43 YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPL----YEIHAAGSN  118 (387)
Q Consensus        43 ~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~----~~~~~~~~~  118 (387)
                      +..|+. ....+|++.++++.        ..++.+++++++.|+..++.+++++||+|+++...|.+    +...++  .
T Consensus        64 Y~r~~~-p~~~~le~~lA~l~--------g~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~--~  132 (403)
T PRK07810         64 YSRYGN-PTVSMFEERLRLIE--------GAEACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILP--R  132 (403)
T ss_pred             eeCCCC-chHHHHHHHHHHHh--------CCCcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHH--H
Confidence            334444 45789999999998        34588888889999999999999999999998866644    345566  7


Q ss_pred             CCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCC
Q 038416          119 NNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGST  198 (387)
Q Consensus       119 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~  198 (387)
                      .|.++..++.       .|++++++++++++++|++++|+||+|.+.+   +++|.++|+++|+++|+|++|+.....  
T Consensus       133 ~G~~v~~vd~-------~d~~~l~~ai~~~tklV~~esp~Nptg~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~--  200 (403)
T PRK07810        133 WGVETVFVDG-------EDLSQWEEALSVPTQAVFFETPSNPMQSLVD---IAAVSELAHAAGAKVVLDNVFATPLLQ--  200 (403)
T ss_pred             cCcEEEEECC-------CCHHHHHHhcCcCceEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCCccccC--
Confidence            8999888863       2889999999999999999999999999976   888899999999999999999853321  


Q ss_pred             CCccccccCCCccEEEEecCcccccccccce-EEEEeeCCCCcccchhHHH-HHHhh-hhccCCcchHHHHHHHHHhhhc
Q 038416          199 PYVPMGVFGSIVPVITLGSISKRWIVPGWRL-GWLVTSDPNGILQNSGFVD-SIKGC-LNAASHPVTFIQAAVPRIVDET  275 (387)
Q Consensus       199 ~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~~~  275 (387)
                        .++ ...   ..+++.|++|.++..|.++ |++++++        +.+. .++.. ...+..++++.++.+...|+. 
T Consensus       201 --~~~-~~g---aDivv~S~tK~l~g~g~~~gG~v~~~~--------~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~t-  265 (403)
T PRK07810        201 --RGL-PLG---ADVVVYSGTKHIDGQGRVLGGAILGDR--------EYIDGPVQKLMRHTGPALSAFNAWVLLKGLET-  265 (403)
T ss_pred             --Chh-hcC---CcEEEccCCceecCCcCceeEEEEeCh--------HHHHHHHHHHHHHhCCCCCHHHHHHHHhccCc-
Confidence              112 122   2388999999998888777 7777654        3333 34433 234556777777776666654 


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 038416          276 NEAFFAKIIGLLKETADICYERIKEIPCITCPVKP  310 (387)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  310 (387)
                          +..+.++..+++..+.+.|++.|.+..+.+|
T Consensus       266 ----l~~R~~~~~~~a~~~a~~L~~~p~v~~V~yP  296 (403)
T PRK07810        266 ----LALRVRHSNASALRIAEFLEGHPAVRWVRYP  296 (403)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHhcCCCccEEECC
Confidence                7788888888999999999988877655544

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.94  E-value=4e-24  Score=198.19  Aligned_cols=332  Identities=11%  Similarity=0.091  Sum_probs=213.1

Q ss_pred             CCCCCCCcHHHHHHHHHHhcCC------CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh
Q 038416           20 GVSLLSDSTVAEDAVVDALRTA------HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL   93 (387)
Q Consensus        20 ~~~~~~~~~~v~~a~~~~~~~~------~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l   93 (387)
                      .|.++..+|.+++++.++++.-      ....|+....+.+|++.+|++++.       .+.+++++|.+ ++..++.++
T Consensus         7 dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~-------e~al~~~sG~~-a~~~~i~~l   78 (392)
T PLN03227          7 DFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGT-------ESAILYSDGAS-TTSSTVAAF   78 (392)
T ss_pred             CccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCC-------CcEEEecCcHH-HHHHHHHHh
Confidence            3457789999999999998751      122466666789999999999932       24555555544 555777788


Q ss_pred             cCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc-----------cCceEEEEeCCCCCcc
Q 038416           94 ARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD-----------ENTVAIVIINPGNPCG  162 (387)
Q Consensus        94 ~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~v~l~~p~nptG  162 (387)
                      +++||.|+++++.|.++...+.  ..+.++..++..+.    -+++.+.+.+.           +++++|++.+++|++|
T Consensus        79 ~~~GD~Vl~~~~~h~s~~~~~~--l~~~~~~~~~~~d~----~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G  152 (392)
T PLN03227         79 AKRGDLLVVDRGVNEALLVGVS--LSRANVRWFRHNDM----KDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTG  152 (392)
T ss_pred             CCCCCEEEEeccccHHHHHHHH--HcCCeEEEeCCCCH----HHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCC
Confidence            9999999999999999887777  67777776654311    13444443432           3578888888999999


Q ss_pred             ccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCC-Cccccc--cCC-CccEEEEecCcccccccccceEEEEeeCCC
Q 038416          163 NVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTP-YVPMGV--FGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPN  238 (387)
Q Consensus       163 ~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~-~~~~~~--~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~  238 (387)
                      .+++   ++++.++|++||+++|+||+|+ +...|.. ......  ..+ .+..+++.|++|.++..   .|++++++  
T Consensus       153 ~i~~---l~~i~~l~~~~g~~livDe~~~-~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g~~---gg~v~~~~--  223 (392)
T PLN03227        153 TLAP---LKELVALKEEFHYRLILDESFS-FGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSV---GGMTVGSE--  223 (392)
T ss_pred             cccC---HHHHHHHHHHcCCEEEEECccc-ccccCCCCCcHHHHcCCCCCCCceEEEeechhhhhcc---CcEEecCH--
Confidence            9988   7789999999999999999998 3322221 111111  111 23358888999986533   48887764  


Q ss_pred             CcccchhHHHHHHhhh-h--ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC--------
Q 038416          239 GILQNSGFVDSIKGCL-N--AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCP--------  307 (387)
Q Consensus       239 ~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------  307 (387)
                            ++++.++... .  ++.+.+++.+.++...+....+  .++..++++++.+++++.|++. ++..+        
T Consensus       224 ------~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~--~~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~rg~~~  294 (392)
T PLN03227        224 ------EVVDHQRLSGSGYCFSASAPPFLAKADATATAGELA--GPQLLNRLHDSIANLYSTLTNS-SHPYALKLRNRLV  294 (392)
T ss_pred             ------HHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhc-CCccccccccccc
Confidence                  5666665432 1  2223335556655555543211  2456677788888888888752 22111        


Q ss_pred             -CCCCceEEEEEecCcccccC-CC---cHHHHHHHHHHhcCeEEEcCC-------ccCCCCeEEEEee--CChHhHHHHH
Q 038416          308 -VKPQGAMFVMVKLNVSMLED-IG---DDLEFCLKLAKEESVIILPGR-------TVGMKNWLRIAFA--AEPATLEDGL  373 (387)
Q Consensus       308 -~~~~~g~~~~~~~~~~~~~~-~~---~~~~~~~~ll~~~gi~v~~g~-------~~~~~~~~Ri~~~--~~~e~~~~~~  373 (387)
                       .....++++.+.+....... ..   ...++...+ .++|+.+.+..       .+-.+..+|++++  +++|++++++
T Consensus       295 ~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~eei~~~~  373 (392)
T PLN03227        295 ITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHS-LSEGVAVVSTGGHVKKFLQLVPPPCLRVVANASHTREDIDKLL  373 (392)
T ss_pred             cCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHH-HHCCCEEEecccccCCcCCCCCCceEEEEecCCCCHHHHHHHH
Confidence             01223556666664211000 00   012454444 56799886422       1222567899994  6899999999


Q ss_pred             HHHHHHHHHhh
Q 038416          374 ERIKAFCQRHA  384 (387)
Q Consensus       374 ~~l~~~~~~~~  384 (387)
                      +.|++++++..
T Consensus       374 ~~l~~~~~~~~  384 (392)
T PLN03227        374 TVLGEAVEAIL  384 (392)
T ss_pred             HHHHHHHHHHH
Confidence            99999997754

>PLN02651 cysteine desulfurase

Probab=99.94  E-value=2.3e-24  Score=199.08  Aligned_cols=316  Identities=13%  Similarity=0.097  Sum_probs=213.2

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCC------CC--CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh---
Q 038416           25 SDSTVAEDAVVDALRTAHYNCY------SP--TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL---   93 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y------~~--~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l---   93 (387)
                      +.|+.+.+++.+.+.....+..      ..  ..-..++|+.+++++      +.++++|++|+|++++++.++..+   
T Consensus        10 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------g~~~~~v~~t~~~t~a~~~~l~~~~~~   83 (364)
T PLN02651         10 PIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALI------GADPKEIIFTSGATESNNLAIKGVMHF   83 (364)
T ss_pred             CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHh------CCCCCeEEEeCCHHHHHHHHHHHHHHh
Confidence            6889999999888754211111      01  112456677777777      356789999999999988877664   


Q ss_pred             -cCCCCeEEEcCCCCcchHHHhh-ccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHH
Q 038416           94 -ARPGANILIPRPGYPLYEIHAA-GSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQ  171 (387)
Q Consensus        94 -~~~g~~vl~~~p~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~  171 (387)
                       .++||+|++....|+++..... ....|.+++.++++  .++.+|+++++++++++++++++++++|+||...|   ++
T Consensus        84 ~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~---l~  158 (364)
T PLN02651         84 YKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVK--SDGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQP---VE  158 (364)
T ss_pred             ccCCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccC--CCCcCCHHHHHHhcCCCcEEEEEECCCCCceeccc---HH
Confidence             4688999999988876543322 01568888888874  34568999999999999999999999999999987   78


Q ss_pred             HHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHH
Q 038416          172 KIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIK  251 (387)
Q Consensus       172 ~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~  251 (387)
                      +|.++|+++|+++++|.+++.    +.-+..+..++.   .+++.|.+|+++.+|  +|++++++.....-+|.+...-.
T Consensus       159 ~I~~~~~~~g~~~~vD~a~~~----g~~~~~~~~~~~---D~~~~s~hK~~gp~G--~g~l~v~~~~~~~l~p~~~g~~~  229 (364)
T PLN02651        159 EIGELCREKKVLFHTDAAQAV----GKIPVDVDDLGV---DLMSISGHKIYGPKG--VGALYVRRRPRVRLEPLMSGGGQ  229 (364)
T ss_pred             HHHHHHHHcCCEEEEEcchhh----CCcccCcccCCC---CEEEechhhhCCCCc--eEEEEEcCCCCCCCCccccCCCc
Confidence            889999999999999999985    222223333433   388899999754444  89998876322111121111000


Q ss_pred             hhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCC--CCc--eEEEEEecCccccc
Q 038416          252 GCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE-IPCITCPVK--PQG--AMFVMVKLNVSMLE  326 (387)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~--~~~--g~~~~~~~~~~~~~  326 (387)
                      ......++++..+..++.++++...+. .++..++.++.++++.+.|++ ++++.+...  +..  ...+.+.++.    
T Consensus       230 ~~~~~~GT~~~~~~~~l~~al~~~~~~-~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~----  304 (364)
T PLN02651        230 ERGRRSGTENTPLVVGLGAACELAMKE-MDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAY----  304 (364)
T ss_pred             cCCccCCCccHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCC----
Confidence            001124577777888888887764443 477778888899999998875 677775532  111  1233434432    


Q ss_pred             CCCcHHHHHHHHHHhcCeEEEcCCccCC-------------------CCeEEEEee--CChHhHH
Q 038416          327 DIGDDLEFCLKLAKEESVIILPGRTVGM-------------------KNWLRIAFA--AEPATLE  370 (387)
Q Consensus       327 ~~~~~~~~~~~ll~~~gi~v~~g~~~~~-------------------~~~~Ri~~~--~~~e~~~  370 (387)
                        .+..++...| .+  |.+..|..|..                   .+.+|+|++  ++++|++
T Consensus       305 --~~~~~~~~~L-~~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did  364 (364)
T PLN02651        305 --VEGESLLMGL-KE--VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD  364 (364)
T ss_pred             --CCHHHHHHHh-CC--EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence              1455666666 43  98988876532                   268999995  5777764

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.94  E-value=3.9e-24  Score=197.58  Aligned_cols=224  Identities=19%  Similarity=0.236  Sum_probs=166.6

Q ss_pred             CCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcch----HHHhhccCCC
Q 038416           45 CYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLY----EIHAAGSNNN  120 (387)
Q Consensus        45 ~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~----~~~~~~~~~g  120 (387)
                      .|+. ....+|++.+++++        +.+++++++|+++|+..++.+++++||+|+++.+.|.+.    ...+.  ..|
T Consensus        50 r~~~-p~~~~le~~la~l~--------g~~~~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~--~~g  118 (380)
T TIGR01325        50 RYAN-PTVAAFEERIAALE--------GAERAVATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILP--RFG  118 (380)
T ss_pred             cCCC-chHHHHHHHHHHHh--------CCCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHH--HhC
Confidence            4443 45789999999987        235788899999999999999999999999999888653    33456  688


Q ss_pred             ceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCC
Q 038416          121 LEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPY  200 (387)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~  200 (387)
                      .++..++..       |++++++++++++++|++++|+||+|...+   +++|.++|+++|+++|+|++|+.....    
T Consensus       119 ~~v~~v~~~-------d~~~l~~~i~~~tklV~le~p~np~g~~~d---l~~I~~la~~~gi~livD~a~~~~~~~----  184 (380)
T TIGR01325       119 IEVSFVDPT-------DLNAWEAAVKPNTKLVFVETPSNPLGELVD---IAALAELAHAIGALLVVDNVFATPVLQ----  184 (380)
T ss_pred             CEEEEECCC-------CHHHHHHhcCCCceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccC----
Confidence            888887652       689999999889999999999999999976   888899999999999999999854321    


Q ss_pred             ccccccCCCccEEEEecCcccccccccce-EEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHH
Q 038416          201 VPMGVFGSIVPVITLGSISKRWIVPGWRL-GWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEA  278 (387)
Q Consensus       201 ~~~~~~~~~~~~~~i~s~sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~  278 (387)
                      .++ .+..   .+++.|++|.++.+|.++ |++++++        ++++.++.... .+...+++..+.+...+     .
T Consensus       185 ~pl-~~g~---Divv~S~sK~l~g~g~~~gG~vv~~~--------~~~~~l~~~~~~~g~~~~p~~a~~~l~~l-----~  247 (380)
T TIGR01325       185 QPL-KLGA---DVVVYSATKHIDGQGRVMGGVIAGSE--------ELMAEVAVYLRHTGPAMSPFNAWVLLKGL-----E  247 (380)
T ss_pred             Cch-hhCC---CEEEeeccceecCCCCeEEEEEEeCH--------HHHHHHHHHHHhhCCCCCHHHHHHHHhcc-----C
Confidence            122 1222   388889999998888776 6666654        57777766543 33344444443333333     3


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 038416          279 FFAKIIGLLKETADICYERIKEIPCITCPVKP  310 (387)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  310 (387)
                      .+..+.++..++++.+.+.|+++|.+..+.+|
T Consensus       248 tl~~r~~~~~~~a~~la~~L~~~p~v~~V~yp  279 (380)
T TIGR01325       248 TLSLRMQKQFDSALAIAEWLQAQPQVQAVYYP  279 (380)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcCCCccEEECC
Confidence            36667888888999999999988766644443

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.94  E-value=3.9e-24  Score=197.88  Aligned_cols=285  Identities=17%  Similarity=0.190  Sum_probs=194.8

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcch----HHHhhccCCCceeee
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLY----EIHAAGSNNNLEARH  125 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~----~~~~~~~~~g~~~~~  125 (387)
                      ....+|++.+|++++        .+..+++++++.|+..++.+++++||+|+++.|.|...    ...+.  ..|.++..
T Consensus        59 p~~~~le~~lA~l~g--------~~~av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~--~~G~~~~~  128 (391)
T TIGR01328        59 PTVSNLEGRIAFLEG--------TEAAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALT--KFGIQVDF  128 (391)
T ss_pred             chHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHh--cCCeEEEE
Confidence            456789999999983        34578888889999999999999999999999988643    34445  68888888


Q ss_pred             eccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccc
Q 038416          126 YDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV  205 (387)
Q Consensus       126 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~  205 (387)
                      +++.       |++++++++++++++|++++|+||+|.+.+   +++|.++|+++|+++|+|++|+.... +.   ++. 
T Consensus       129 vd~~-------d~e~l~~~i~~~tklV~le~p~Np~G~v~d---l~~I~~la~~~gi~livD~a~a~~~~-~~---~~~-  193 (391)
T TIGR01328       129 INMA-------IPEEVKAHIKDNTKIVYFETPANPTMKLID---MERVCRDAHSQGVKVIVDNTFATPML-TN---PVA-  193 (391)
T ss_pred             ECCC-------CHHHHHHhhccCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCchhcc-CC---chh-
Confidence            7652       789999999889999999999999999977   77888889999999999999985332 11   221 


Q ss_pred             cCCCccEEEEecCcccccccccce-EEEEeeCCCCcccchhHHHHHHhhh--h-ccCCcchHHHHHHHHHhhhccHHHHH
Q 038416          206 FGSIVPVITLGSISKRWIVPGWRL-GWLVTSDPNGILQNSGFVDSIKGCL--N-AASHPVTFIQAAVPRIVDETNEAFFA  281 (387)
Q Consensus       206 ~~~~~~~~~i~s~sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~l~~~~~~~~~  281 (387)
                      ...   .+++.|++|.++.+|.++ |++++++        +++++++...  . .+...++...+.+...++.     +.
T Consensus       194 ~g~---Divv~S~sK~lgg~g~~~gG~v~~~~--------~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~t-----l~  257 (391)
T TIGR01328       194 LGV---DVVVHSATKYIGGHGDVVAGLICGKA--------ELLQQIRMVGIKDMTGSVISPFDAWLILRGLKT-----LN  257 (391)
T ss_pred             cCC---CEEEccccccccCCCCceEEEEEcCH--------HHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcCc-----HH
Confidence            222   288899999998888764 6665543        6777776532  1 2334455444444443433     56


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----------------ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeE
Q 038416          282 KIIGLLKETADICYERIKEIPCITCPVKPQ----------------GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVI  345 (387)
Q Consensus       282 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~  345 (387)
                      .+.++..++++.+.+.|++.|.+..+.+|.                .|.++.+.+...    ......+++.+ +=..+.
T Consensus       258 ~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~~----~~~~~~f~~~l-~~~~~~  332 (391)
T TIGR01328       258 IRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKGG----FAGAKKLLNNL-KLIRLA  332 (391)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCCC----HHHHHHHHHhC-CcceEe
Confidence            677888888999999999887765444442                233455555310    01122333332 211111


Q ss_pred             EEcCCccC----------------------C-CCeEEEEeeCChHhHHHHHHHHHHHHHH
Q 038416          346 ILPGRTVG----------------------M-KNWLRIAFAAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       346 v~~g~~~~----------------------~-~~~~Ri~~~~~~e~~~~~~~~l~~~~~~  382 (387)
                      ..-|+...                      . ++.+|+|++.  |+.+.+++.|.++++.
T Consensus       333 ~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl--E~~~dl~~dl~~al~~  390 (391)
T TIGR01328       333 VSLGDAETLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGL--EDADDLIADLKQALDA  390 (391)
T ss_pred             cCCCCCcccCcCCCccccccCCHHHHHhcCCCCCeEEEEeCc--CCHHHHHHHHHHHHhh
Confidence            11121110                      0 3479999998  6788888888888765

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.94  E-value=3.4e-24  Score=200.24  Aligned_cols=340  Identities=17%  Similarity=0.191  Sum_probs=219.7

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCC-CC-CCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTA-HY-NCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI   86 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~-~~-~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~   86 (387)
                      .++|..-|....+..+. +|.+.+|+++++.+. .. ..|. .....+|.+.++++.        ..+.+++++|+++|+
T Consensus        40 ~~lD~~~g~~~~~lGh~-~p~v~~A~~~~~~~~~~~~~~~~-~~~~~~la~~l~~~~--------~~~~v~~~~sGseA~  109 (406)
T PRK12381         40 EYIDFAGGIAVNALGHA-HPALREALNEQASKFWHTGNGYT-NEPVLRLAKKLIDAT--------FADRVFFCNSGAEAN  109 (406)
T ss_pred             EEEEcCcCHhhccCCCC-CHHHHHHHHHHHhhcccccCccC-CHHHHHHHHHHHhhC--------CCCeEEEcCCcHHHH
Confidence            45555444332344555 889999999998752 11 1111 111234444444433        246999999999999


Q ss_pred             HHHHHhhcC--------CCCeEEEcCCCCcchHHHhhccCCCcee-e---eeccCC--CCCccCChhhHHHhhccCceEE
Q 038416           87 EISLSVLAR--------PGANILIPRPGYPLYEIHAAGSNNNLEA-R---HYDLLP--EKRWEVDLDGVEALADENTVAI  152 (387)
Q Consensus        87 ~~~~~~l~~--------~g~~vl~~~p~~~~~~~~~~~~~~g~~~-~---~~~~~~--~~~~~~~~~~l~~~~~~~~~~v  152 (387)
                      +.+++....        .+.+|+..+++|++......  ..+... .   ..++.+  ..-...|++.+++.+++++.+|
T Consensus       110 e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aav  187 (406)
T PRK12381        110 EAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTV--SAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALIDDQTCAV  187 (406)
T ss_pred             HHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHH--hhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhccCCeeEE
Confidence            999998531        34689999999998764433  222111 0   001110  0001237889999887666666


Q ss_pred             EEeCCCCCccccC--CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceE
Q 038416          153 VIINPGNPCGNVF--SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLG  230 (387)
Q Consensus       153 ~l~~p~nptG~~~--~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G  230 (387)
                      ++ +|.+++|-+.  +.+.+++|.++|++||+++|+||+|.++.+.|.... ...+.....   +.+++|.++ +|+|+|
T Consensus       188 ii-EPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~-~~~~~v~pD---i~t~sK~l~-gG~~ig  261 (406)
T PRK12381        188 IV-EPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYA-YMHYGVTPD---VLTTAKALG-GGFPIG  261 (406)
T ss_pred             EE-eCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhh-hHhhCCCCC---EEEehhhhh-CCCceE
Confidence            55 7888777543  689999999999999999999999998876664322 112221111   358999976 789999


Q ss_pred             EEEeeCCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCC
Q 038416          231 WLVTSDPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIP-CITCPV  308 (387)
Q Consensus       231 ~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~  308 (387)
                      |+++++        ++++.+.... ..+++.+++.+.++.+.|+...+   .+..++++++.+++.+.|+++. ....+.
T Consensus       262 ~~~~~~--------~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~  330 (406)
T PRK12381        262 AMLTTE--------KCASVMTVGTHGTTYGGNPLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTINARYGLFS  330 (406)
T ss_pred             EEEEcH--------HHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHhhCCCEE
Confidence            999976        6777776533 34567788888888887764322   2456777777777877777651 121111


Q ss_pred             -CCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHhhh
Q 038416          309 -KPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       309 -~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                       ....|.++++.++....   .....+. ..+.++||.+.+..    ++.+|++++  .+++++++++++|.++++++..
T Consensus       331 ~vrg~Gl~~~~~l~~~~~---~~~~~~~-~~l~~~Gv~v~~~g----~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~~  402 (406)
T PRK12381        331 EIRGLGLLIGCVLNAEYA---GKAKQIS-QEAAKAGVMVLIAG----PNVVRFAPALNISEEEITTGLDRFARACERFVS  402 (406)
T ss_pred             EEecCeEEEEEEecCchh---hHHHHHH-HHHHHCCcEEeeCC----CCEEEEeCCccCCHHHHHHHHHHHHHHHHHHHh
Confidence             23457777877753100   0123444 44567799997642    468999985  6899999999999999987653

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.94  E-value=4.8e-24  Score=197.65  Aligned_cols=311  Identities=20%  Similarity=0.247  Sum_probs=226.5

Q ss_pred             CCcHHHHHHHHHHhcCCCCC----CCCC----CCCcHHHHHHHHHHHhhcCCCCCCC-CCEEEcCChHHHHHHHHHhh--
Q 038416           25 SDSTVAEDAVVDALRTAHYN----CYSP----TLGVPSARRGIADYLNRDLPYKLSP-EDVYLTLGCSQAIEISLSVL--   93 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~----~y~~----~~~~~~lr~~ia~~~~~~~~~~~~~-~~i~~~~g~~~a~~~~~~~l--   93 (387)
                      +.|+.+.+++.+.+.....+    .+..    .....+.|+.+++++      ++++ ++|++++|++++++.++.++  
T Consensus        10 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~l------g~~~~~~v~~~~~~t~a~~~~~~~l~~   83 (371)
T PF00266_consen   10 PMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLL------GAPPDEEVVFTSNGTEALNAVASSLLN   83 (371)
T ss_dssp             B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHH------TSSTTEEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhc------CCccccccccccccchhhhhhhhcccc
Confidence            68999999999987643111    1111    123457788888888      4566 79999999999999999999  


Q ss_pred             -cCCCCeEEEcCCCCcchH----HHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           94 -ARPGANILIPRPGYPLYE----IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        94 -~~~g~~vl~~~p~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                       .++|++|++..-.|++..    ...+  ..|.++..++.+..  ..+|+++++++++++++++++++.+|.||+..|  
T Consensus        84 ~~~~g~~vl~~~~~~~s~~~~~~~~~~--~~g~~v~~i~~~~~--~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~p--  157 (371)
T PF00266_consen   84 PLKPGDEVLVTSNEHPSNRYPWEEIAK--RKGAEVRVIPADPG--GSLDLEDLEEALNPDTRLVSISHVENSTGVRNP--  157 (371)
T ss_dssp             HGTTTCEEEEEESSHHHHHHHHHHHHH--HTTEEEEEEEEGTT--SSCSHHHHHHHHHTTESEEEEESBETTTTBBSS--
T ss_pred             ccccccccccccccccccccccccccc--cchhhhcccccccc--chhhhhhhhhhhccccceEEeecccccccEEee--
Confidence             789999999999998654    4555  68999988887533  367899999999999999999999999999988  


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD  248 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~  248 (387)
                       +++|.++|+++|+++++|.+++.    +.....+..++.|   +++.|.+|.+|.+|  +|+++.++        +.++
T Consensus       158 -i~~I~~~~~~~~~~~~vD~~~~~----g~~~id~~~~~~D---~~~~s~~Kl~gp~G--~g~l~v~~--------~~~~  219 (371)
T PF00266_consen  158 -IEEIAKLAHEYGALLVVDAAQSA----GCVPIDLDELGAD---FLVFSSHKLGGPPG--LGFLYVRP--------EAIE  219 (371)
T ss_dssp             -HHHHHHHHHHTTSEEEEE-TTTT----TTSS--TTTTTES---EEEEESTSTTSSST--EEEEEEEH--------HHHH
T ss_pred             -eceehhhhhccCCceeEechhcc----ccccccccccccc---eeeecccccCCCCc--hhhheehh--------hhhh
Confidence             88899999999999999999995    2233334444443   88999999656666  79999886        4555


Q ss_pred             HHHhhh---------------------h-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 038416          249 SIKGCL---------------------N-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITC  306 (387)
Q Consensus       249 ~~~~~~---------------------~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  306 (387)
                      +++...                     . ..++++.+...++..+++...+..+++..++...+.+++.+.|++++++..
T Consensus       220 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~  299 (371)
T PF00266_consen  220 RLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEV  299 (371)
T ss_dssp             HHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEE
T ss_pred             ccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeE
Confidence            553111                     0 123566777777777877766777888899999999999999999987774


Q ss_pred             CCC---CCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccC--------CCCeEEEEee--CChHhHHHH
Q 038416          307 PVK---PQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG--------MKNWLRIAFA--AEPATLEDG  372 (387)
Q Consensus       307 ~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~--------~~~~~Ri~~~--~~~e~~~~~  372 (387)
                      ...   +..+..+.+.++.      .+...+...| ++.||.+..|..+.        ..+.+|+|++  .+++|++++
T Consensus       300 ~~~~~~~~~~~i~~~~~~~------~~~~~~~~~L-~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l  371 (371)
T PF00266_consen  300 LGPDDEPRRPSIVSFNLPG------SDADDVVKYL-EERGIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL  371 (371)
T ss_dssp             SSSSCGGBGTTEEEEEETT------SSHHHHHHHH-HHHTEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred             eeecccccccceEEEeecC------CCHHHHHHHH-hhcCEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence            321   2223344555543      1455565555 55599999987665        3589999995  588999864

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.94  E-value=7.6e-24  Score=199.28  Aligned_cols=325  Identities=17%  Similarity=0.104  Sum_probs=207.2

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCC------CCCCcHHHHH----HHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYS------PTLGVPSARR----GIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA   94 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~------~~~~~~~lr~----~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~   94 (387)
                      ++++.+++++...+......+++      .......+++    .+++++    +  ++...|++++ +++++..++.+++
T Consensus        36 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~----g--~~~~~i~~~s-gt~al~~~l~~l~  108 (416)
T PRK00011         36 FVSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELF----G--AEYANVQPHS-GSQANAAVYFALL  108 (416)
T ss_pred             cCCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHh----C--CCceeeecCC-chHHHHHHHHHhc
Confidence            37899999987765322111111      1111223333    445555    3  3445566555 5779999999999


Q ss_pred             CCCCeEEEcCCCCcchHH---HhhccCCCceeeeeccCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCccccCCHHHH
Q 038416           95 RPGANILIPRPGYPLYEI---HAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCGNVFSYQHL  170 (387)
Q Consensus        95 ~~g~~vl~~~p~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~~  170 (387)
                      ++||+|+++.|+|.++..   .......|.+++.++++. +++.+|++++++++++ +++++++++++++  ...+   +
T Consensus       109 ~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~k~v~~~~~~~~--~~~~---~  182 (416)
T PRK00011        109 KPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDE-ETGLIDYDEVEKLALEHKPKLIIAGASAYS--RPID---F  182 (416)
T ss_pred             CCCCEEEEeccccCCccccccccccccceeeEeecCcCc-ccCCcCHHHHHHHHHhcCCCEEEECCCcCC--CccC---H
Confidence            999999999999975432   111113456777777643 2467999999999865 7888887765543  4434   8


Q ss_pred             HHHHHHHHhcCcEEeecccccc-cccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHH
Q 038416          171 QKIARTARNLGIIVIADEVYNH-LAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDS  249 (387)
Q Consensus       171 ~~l~~~~~~~~~~li~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~  249 (387)
                      ++|.++|+++|+++|+|++|+. +.+.+.....+.  .   ..++++|++|++  +|.|.||+++++       +++++.
T Consensus       183 ~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~--~---~di~~~S~~K~l--~g~~gg~i~~~~-------~~~~~~  248 (416)
T PRK00011        183 KRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP--H---ADVVTTTTHKTL--RGPRGGLILTND-------EELAKK  248 (416)
T ss_pred             HHHHHHHHHcCCEEEEECcchhcccccCccCCCCC--C---CcEEEecCCcCC--CCCCceEEEeCC-------HHHHHH
Confidence            8999999999999999999863 222222122222  1   237799999974  788899999853       257777


Q ss_pred             HHhhhhc--cCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccC
Q 038416          250 IKGCLNA--ASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLED  327 (387)
Q Consensus       250 ~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  327 (387)
                      ++.....  ..++......++..++....+.+++++.+++.++++.+++.|+++ ++.+......++++|+.++...   
T Consensus       249 l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~i~~~~~~---  324 (416)
T PRK00011        249 INSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAER-GFRVVSGGTDNHLVLVDLRSKG---  324 (416)
T ss_pred             HHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeeeecCCCCeEEEEeCcccC---
Confidence            7655431  122233333333333333233457888899999999999999987 6763311123478888875321   


Q ss_pred             CCcHHHHHHHHHHhcCeEEEcCCc-c-----CCCCeEEEEe------eCChHhHHHHHHHHHHHHHH
Q 038416          328 IGDDLEFCLKLAKEESVIILPGRT-V-----GMKNWLRIAF------AAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       328 ~~~~~~~~~~ll~~~gi~v~~g~~-~-----~~~~~~Ri~~------~~~~e~~~~~~~~l~~~~~~  382 (387)
                      . +..++.. .++++||.+..+.. +     ..+..+|++.      +.++++++.+++.|++++..
T Consensus       325 ~-~~~~~~~-~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~~  389 (416)
T PRK00011        325 L-TGKEAEA-ALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLDN  389 (416)
T ss_pred             C-CHHHHHH-HHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHHhc
Confidence            1 3344544 45778999974321 1     1245799965      34689999999999887764

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.94  E-value=2.9e-24  Score=202.24  Aligned_cols=345  Identities=14%  Similarity=0.065  Sum_probs=220.0

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      +.+.+.+-|.....-+ -.+|.+.+++++++.+... .+.+..+..+|++.|++++.       ..+++++++|+++|++
T Consensus        48 ~~ylD~~~g~~~~~lG-h~~p~v~~ai~~q~~~~~~-~~~~~~~~~~lae~l~~~~~-------~~~~v~~~~sGseA~e  118 (423)
T TIGR00713        48 NEYIDYVLSWGPLILG-HAHPRVVEAVKEALERGTS-YGAPTEAEILLAKEIISRVP-------SVEMVRFVNSGTEATM  118 (423)
T ss_pred             CEEEEccccccccccC-CCCHHHHHHHHHHHHhCCc-CCCCCHHHHHHHHHHHHhCC-------cccEEEEeCCHHHHHH
Confidence            3455655544321111 2678999999999986532 22234567889999988772       2368999999999999


Q ss_pred             HHHHhhc--CCCCeEEEcCCCCcchHHHhh-ccCCCceeeeeccCCC-------CCc---cCChhhHHHhhc---cCceE
Q 038416           88 ISLSVLA--RPGANILIPRPGYPLYEIHAA-GSNNNLEARHYDLLPE-------KRW---EVDLDGVEALAD---ENTVA  151 (387)
Q Consensus        88 ~~~~~l~--~~g~~vl~~~p~~~~~~~~~~-~~~~g~~~~~~~~~~~-------~~~---~~~~~~l~~~~~---~~~~~  151 (387)
                      .+++...  ..+++|+...++|+++...+. .+..+......+..+.       ...   .-|+++++++++   +++.+
T Consensus       119 ~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aa  198 (423)
T TIGR00713       119 SAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAG  198 (423)
T ss_pred             HHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcCCcEEE
Confidence            9998743  245899999999998754333 0011111111111000       000   017889998886   45666


Q ss_pred             EEEe-CCCCCccccCC-HHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccce
Q 038416          152 IVII-NPGNPCGNVFS-YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRL  229 (387)
Q Consensus       152 v~l~-~p~nptG~~~~-~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~  229 (387)
                      |++. .++| +|.+++ .+.+++|.++|++||+++|+||+|.++.++...........++     +.++||.++ +|+|+
T Consensus       199 vi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~~~~~~~~~~pD-----i~t~sK~l~-~G~pi  271 (423)
T TIGR00713       199 VIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGGAQEYFGVEPD-----LTTLGKIIG-GGLPV  271 (423)
T ss_pred             EEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcchhHHHhCCCcc-----hhhhhhhhc-CCCce
Confidence            7664 5667 788877 6889999999999999999999999885432111111122222     347999987 88999


Q ss_pred             EEEEeeCCCCcccchhHHHHHHhh----hhccCCcchHHHHHHHHHhhhccH-HHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 038416          230 GWLVTSDPNGILQNSGFVDSIKGC----LNAASHPVTFIQAAVPRIVDETNE-AFFAKIIGLLKETADICYERIKEIPCI  304 (387)
Q Consensus       230 G~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~  304 (387)
                      ||+++++        ++.+.+...    ...+++.+++.+.++.+.|+...+ ...++..+...+.++.+.+.++++ ++
T Consensus       272 g~v~~~~--------~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~  342 (423)
T TIGR00713       272 GAFGGRR--------EIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDT-GI  342 (423)
T ss_pred             eeeeEHH--------HHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence            9999976        677777532    123557889999988888875432 355666666667777777777766 33


Q ss_pred             CCCCCCCceEEEEEecCcccccC-----CCc---HHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHH
Q 038416          305 TCPVKPQGAMFVMVKLNVSMLED-----IGD---DLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERI  376 (387)
Q Consensus       305 ~~~~~~~~g~~~~~~~~~~~~~~-----~~~---~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l  376 (387)
                      ... ....|.++.+.+......+     ..+   ...+...++ ++||.+.++.    .+.+|+++..+++++++++++|
T Consensus       343 ~~~-v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~----~~~~~l~~~~t~~~i~~~~~~l  416 (423)
T TIGR00713       343 PHT-VNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEML-DKGVFLPPSQ----FEACFLSAAHTEEDIENTIEAA  416 (423)
T ss_pred             CeE-EEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHH-HCCeEEecCC----ccceeeECCCCHHHHHHHHHHH
Confidence            311 1122334444332111000     001   124555554 5799987642    2468999888999999999999


Q ss_pred             HHHHHHh
Q 038416          377 KAFCQRH  383 (387)
Q Consensus       377 ~~~~~~~  383 (387)
                      .++++++
T Consensus       417 ~~~l~~~  423 (423)
T TIGR00713       417 EEVFAEL  423 (423)
T ss_pred             HHHHhhC
Confidence            9988753

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.94  E-value=8.6e-25  Score=201.36  Aligned_cols=316  Identities=12%  Similarity=0.089  Sum_probs=212.4

Q ss_pred             CCcHHHHHHHHHHhcCCCC--CCCCCC------CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc--
Q 038416           25 SDSTVAEDAVVDALRTAHY--NCYSPT------LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA--   94 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~--~~y~~~------~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--   94 (387)
                      ++|+.+.+++.+.+.....  ..+...      ....++|+.+++++      +.++++|++++|+++++..++.++.  
T Consensus         9 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------g~~~~~v~~~~g~t~a~~~~l~~l~~~   82 (353)
T TIGR03235         9 PIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEAL------GADTEEVIFTSGATESNNLAILGLARA   82 (353)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHh------CCCCCeEEEeCCHHHHHHHHHHHHHHh
Confidence            6889999999988753211  111110      12457778888887      4577899999999999999998875  


Q ss_pred             --CCC-CeEEEcCCCCcchHHH---hhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           95 --RPG-ANILIPRPGYPLYEIH---AAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        95 --~~g-~~vl~~~p~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                        ++| +.|++....|+++...   ++  ..|.+++.++++  .++.+|+++++++++++++++++++++||||..+|  
T Consensus        83 ~~~~g~~~vi~~~~~~~s~~~~~~~~~--~~G~~v~~v~~~--~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~--  156 (353)
T TIGR03235        83 GEQKGKKHIITSAIEHPAVLEPIRALE--RNGFTVTYLPVD--ESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQP--  156 (353)
T ss_pred             cccCCCCeeeEcccccHHHHHHHHHHH--hcCCEEEEEccC--CCCcCCHHHHHHhCCCCCEEEEEEcccCCceeccC--
Confidence              356 7788888777765433   44  578999988875  34568999999999888999999999999999987  


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcc--cchhH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGIL--QNSGF  246 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~--~~~~~  246 (387)
                       +++|.++|+++|+++|+|++++...    ....+....   -.+++.|.+|+++++|  +|++++++.....  ..|.+
T Consensus       157 -~~~I~~l~~~~~~~~ivD~a~~~g~----~~~~~~~~~---~D~~~~s~~K~~gp~g--~g~l~~~~~~~~~~~~~~~~  226 (353)
T TIGR03235       157 -IREIAEVLEAHEAFFHVDAAQVVGK----ITVDLSADR---IDLISCSGHKIYGPKG--IGALVIRKRGKPKAPLKPIM  226 (353)
T ss_pred             -HHHHHHHHHHcCCEEEEEchhhcCC----ccccccccC---CCEEEeehhhcCCCCc--eEEEEEccCcccccccCcee
Confidence             7888999999999999999988522    122222222   2377889999876666  7999887631100  00000


Q ss_pred             HHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceE--EEEEecCccc
Q 038416          247 VDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAM--FVMVKLNVSM  324 (387)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~--~~~~~~~~~~  324 (387)
                      ...-.......++++.....++.++++.. ....+.+.++++++++++++.|++ +++++...+....  ++.+.++.  
T Consensus       227 ~~~~~~~~~~~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~l~~-~g~~~~~~~~~~~~~i~~~~~~~--  302 (353)
T TIGR03235       227 FGGGQERGLRPGTLPVHLIVGMGEAAEIA-RRNAQAWEVKLRAMRNQLRDALQT-LGVKLNGDPAETIPHILNFSIDG--  302 (353)
T ss_pred             eCCCCcCccccCCCChHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcc-CCeEEeCCcccccCCEEEEEeCC--
Confidence            00000000123456666777777777643 345678889999999999999988 4777443332211  22333331  


Q ss_pred             ccCCCcHHHHHHHHHHhcCeEEEcCCccCCC----CeEEEEeeCChHhHHHH
Q 038416          325 LEDIGDDLEFCLKLAKEESVIILPGRTVGMK----NWLRIAFAAEPATLEDG  372 (387)
Q Consensus       325 ~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~----~~~Ri~~~~~~e~~~~~  372 (387)
                          .+..++...| ++ +|.+.+|..|...    ..+|.+++.+++++..+
T Consensus       303 ----~~~~~v~~~L-~~-~i~v~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~  348 (353)
T TIGR03235       303 ----VNSEALIVNL-RA-DAAVSTGSACSSSKYEPSHVLQAMGLDTDRARGA  348 (353)
T ss_pred             ----cCHHHHHHHH-hC-CeEEEchhhcCCCCCCCCHHHHHcCCCHHHhCcc
Confidence                1445555555 55 8999999888653    26788887776655443

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.94  E-value=7.2e-24  Score=194.69  Aligned_cols=286  Identities=16%  Similarity=0.199  Sum_probs=195.9

Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhh--ccCCC
Q 038416           43 YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAA--GSNNN  120 (387)
Q Consensus        43 ~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~--~~~~g  120 (387)
                      +..|+. ....+|++.++++.        . ++.++++++++++..++.+++++||+|+++.|+|+++...+.  ....|
T Consensus        45 y~ry~~-p~~~~Le~~lA~l~--------~-~~~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G  114 (366)
T PRK07582         45 YGRASN-PTWRALEAALGELE--------G-AEALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLG  114 (366)
T ss_pred             eECCCC-ccHHHHHHHHHHHc--------C-CCEEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCe
Confidence            334544 57899999999986        1 356666777889999999999999999999999988765432  01578


Q ss_pred             ceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCC
Q 038416          121 LEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPY  200 (387)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~  200 (387)
                      +++..++....      .+    .+.+++++|++++|+||+|.+.+   +++|+++|+++|+++|+|++|....  +.  
T Consensus       115 ~~v~~v~~~~~------~~----~~~~~t~lV~le~p~NPtg~v~d---i~~I~~~a~~~g~~lvVD~t~~~~~--~~--  177 (366)
T PRK07582        115 VTVREAPTAGM------AE----AALAGADLVLAETPSNPGLDVCD---LAALAAAAHAAGALLVVDNTTATPL--GQ--  177 (366)
T ss_pred             EEEEEECCCCh------HH----HhccCceEEEEECCCCCCCCccC---HHHHHHHHHHcCCEEEEECCCCCcc--cc--
Confidence            88888876321      11    23458899999999999998765   8999999999999999999986311  21  


Q ss_pred             ccccccCCCccEEEEecCccccc-ccccceEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHH
Q 038416          201 VPMGVFGSIVPVITLGSISKRWI-VPGWRLGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEA  278 (387)
Q Consensus       201 ~~~~~~~~~~~~~~i~s~sK~~~-~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~  278 (387)
                      .++. +..   .++++|++|+++ .+|+++||+++++       +++++.++..+. .+..++++..+.+...++.    
T Consensus       178 ~p~~-~g~---Divv~S~sK~l~G~~g~~~G~v~~~~-------~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~t----  242 (366)
T PRK07582        178 RPLE-LGA---DLVVASDTKALTGHSDLLLGYVAGRD-------PELMAAVERWRLLAGAIPGPFEAWLAHRSLGT----  242 (366)
T ss_pred             Cchh-cCC---cEEEecccccccCCCCeeEEEEEcCc-------HHHHHHHHHHHHHhCCCCCHHHHHHHHhcccc----
Confidence            1221 222   278899999974 4679999999753       257777766543 3455666666655555543    


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----------------ceEEEEEecCcccccCCCcHHHHHHHHHHhc
Q 038416          279 FFAKIIGLLKETADICYERIKEIPCITCPVKPQ----------------GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEE  342 (387)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  342 (387)
                       +..+.++.++++..+.+.|++.|.+..+.+|.                .|.++.+.+.        + .+.+.+.+.+.
T Consensus       243 -l~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~--------~-~~~~~~~~~~l  312 (366)
T PRK07582        243 -LGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA--------D-AAAAERFVAAS  312 (366)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC--------C-HHHHHHHHHhC
Confidence             56677888899999999999887766554332                2445555553        1 23334444555


Q ss_pred             CeEEEc---CCcc---------C--C-CCeEEEEeeCChHhHHHHHHHHHHHHHH
Q 038416          343 SVIILP---GRTV---------G--M-KNWLRIAFAAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       343 gi~v~~---g~~~---------~--~-~~~~Ri~~~~~~e~~~~~~~~l~~~~~~  382 (387)
                      ++....   |+..         +  . ++.+|+|++.  |+.+.+++.|.+++++
T Consensus       313 ~~~~~~~s~G~~~sl~~~~~~~~~~~~~~liR~svGl--E~~~dli~dl~~al~~  365 (366)
T PRK07582        313 RLVVAATSFGGVHTSADRRARWGDAVPEGFVRLSCGI--EDTDDLVADLERALDA  365 (366)
T ss_pred             CcceecccCCCccchhhhHHHcCCCCCCCeEEEEecc--CCHHHHHHHHHHHHhh
Confidence            654431   1100         0  1 3579999998  4566677777777754

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.94  E-value=1.1e-23  Score=194.70  Aligned_cols=288  Identities=20%  Similarity=0.179  Sum_probs=192.0

Q ss_pred             CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhh--ccCCCceeeee
Q 038416           49 TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAA--GSNNNLEARHY  126 (387)
Q Consensus        49 ~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~--~~~~g~~~~~~  126 (387)
                      .....+|++.++++.+.        +..++++++++|+..++.+++++||+|+++.|+|.+....+.  ....|+++..+
T Consensus        60 ~p~~~~Le~~lA~~~g~--------~~~i~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~  131 (388)
T PRK07811         60 NPTRTALEEQLAALEGG--------AYGRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPV  131 (388)
T ss_pred             CccHHHHHHHHHHHhCC--------CceEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEe
Confidence            35678999999999832        334555667899999999999999999999999986443322  11357776666


Q ss_pred             ccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcccccc
Q 038416          127 DLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF  206 (387)
Q Consensus       127 ~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~  206 (387)
                      +.       .|++++++++++++++|++++|+||+|...+   +++|.++|+++|+++|+|++|+.....    .++. .
T Consensus       132 d~-------~d~e~l~~~i~~~tklV~ie~p~NPtg~~~d---l~~I~~la~~~gi~lIvD~a~a~~~~~----~p~~-~  196 (388)
T PRK07811        132 DL-------SDLDAVRAAITPRTKLIWVETPTNPLLSITD---IAALAELAHDAGAKVVVDNTFASPYLQ----QPLA-L  196 (388)
T ss_pred             CC-------CCHHHHHHhcCcCCeEEEEECCCCCcceecC---HHHHHHHHHHcCCEEEEECCCCccccC----Cchh-h
Confidence            53       3789999999889999999999999998844   889999999999999999999864321    1221 2


Q ss_pred             CCCccEEEEecCcccccccc-cceEEEEeeCCCCcccchhHHHHHHhhhhc-cCCcchHHHHHHHHHhhhccHHHHHHHH
Q 038416          207 GSIVPVITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGFVDSIKGCLNA-ASHPVTFIQAAVPRIVDETNEAFFAKII  284 (387)
Q Consensus       207 ~~~~~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~  284 (387)
                      ..   .+++.|++|.++.+| .+.||+++++       +++.+.++..+.. ....++...+.+...|+.     +..+.
T Consensus       197 ga---Divv~S~sK~l~g~~~~~gG~vv~~~-------~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~t-----l~~R~  261 (388)
T PRK07811        197 GA---DVVVHSTTKYIGGHSDVVGGALVTND-------EELDEAFAFLQNGAGAVPGPFDAYLTLRGLKT-----LAVRM  261 (388)
T ss_pred             CC---cEEEecCceeecCCCCcEEEEEEECC-------HHHHHHHHHHHHhcCCCCCHHHHHHHHhccCc-----HHHHH
Confidence            22   389999999987654 5679988864       1455655544432 334444443333333332     66777


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCC----------------ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEc
Q 038416          285 GLLKETADICYERIKEIPCITCPVKPQ----------------GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILP  348 (387)
Q Consensus       285 ~~~~~~~~~~~~~l~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~  348 (387)
                      ++..++++.+.+.|++.|.+..+.+|.                .|.++.+.+...    ......+++.+ +=..+...-
T Consensus       262 ~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~----~~~~~~f~~~l-~~~~~~~s~  336 (388)
T PRK07811        262 DRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAGG----EEAARDFCART-KVFTLAESL  336 (388)
T ss_pred             HHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCCC----HHHHHHHHHhC-CcceeeccC
Confidence            888889999999999887765444442                244556666421    01122333332 111111111


Q ss_pred             CCcc-------------------CC-CCeEEEEeeCChHhHHHHHHHHHHHHH
Q 038416          349 GRTV-------------------GM-KNWLRIAFAAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       349 g~~~-------------------~~-~~~~Ri~~~~~~e~~~~~~~~l~~~~~  381 (387)
                      |+..                   +. ++.+|+|++.  |+.+.+++.|.+++.
T Consensus       337 G~~~sl~~~~~~~~~~~~~~~~~gi~~~liR~svGl--E~~~dl~~dl~~al~  387 (388)
T PRK07811        337 GGVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGI--EDVADLLADLEQALG  387 (388)
T ss_pred             CCCcceEeCCcccCcccCCHhhcCCCCCEEEEEeCC--CCHHHHHHHHHHHhh
Confidence            1110                   01 3579999998  567777778777764

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.94  E-value=7.4e-24  Score=198.98  Aligned_cols=350  Identities=15%  Similarity=0.102  Sum_probs=218.4

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      .+.+..-|......++ .+|.+.+++.+++.+... .+......+ ....+++++....+.+. .+.+++++++++|++.
T Consensus        42 ~~lD~~~g~~~~~lGh-~~~~i~~a~~~~~~~~~~-~~~~~~~~~-~~~~la~~l~~~~~~~~-~~~~~f~~sGsea~e~  117 (425)
T PRK08088         42 EYLDFAGGIAVLNTGH-LHPKVVAAVEAQLKKLSH-TCFQVLAYE-PYLELCEKMNQKVPGDF-AKKTLLVTTGSEAVEN  117 (425)
T ss_pred             EEEEcCCchhhcCCCC-CCHHHHHHHHHHHhhCCC-ccccccCCH-HHHHHHHHHHHhCCCCC-CCEEEEeCCcHHHHHH
Confidence            3455545443222222 488899999999886322 122112223 34577777766443221 2478888888898888


Q ss_pred             HHHhhc--CCCCeEEEcCCCCcchHHHhhccCCCcee--------------eeeccCC-CCCccC--ChhhHHHhhc---
Q 038416           89 SLSVLA--RPGANILIPRPGYPLYEIHAAGSNNNLEA--------------RHYDLLP-EKRWEV--DLDGVEALAD---  146 (387)
Q Consensus        89 ~~~~l~--~~g~~vl~~~p~~~~~~~~~~~~~~g~~~--------------~~~~~~~-~~~~~~--~~~~l~~~~~---  146 (387)
                      +++...  .....|+...++|++....+.  ..+...              ..++.+. ..+...  +++.+++.++   
T Consensus       118 Alklar~~~~r~~iv~~~~~yHG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~  195 (425)
T PRK08088        118 AVKIARAATKRSGVIAFTGAYHGRTHYTL--ALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDA  195 (425)
T ss_pred             HHHHHHHHhCCCeEEEECCccCCccHHHH--HhhCCCCccccCCCCCCCCcEEcCCCccccCccHHHHHHHHHHHHHhcc
Confidence            887753  223567777999998765544  322211              1111110 111111  1456777764   


Q ss_pred             -cCceEEEEeCC--CCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCccccc
Q 038416          147 -ENTVAIVIINP--GNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWI  223 (387)
Q Consensus       147 -~~~~~v~l~~p--~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~  223 (387)
                       ++..+.++..|  ++++...++++.+++|.++|+++|+++|+||+|.++.+.+... .+...   +....+.||||.++
T Consensus       196 ~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~-~~~~~---~~~pdi~s~sK~l~  271 (425)
T PRK08088        196 APEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLF-AMEQM---GVAADLTTFAKSIA  271 (425)
T ss_pred             CCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchh-HHhhc---CCCCCEEEEecccc
Confidence             23344556666  5676678899999999999999999999999999876554321 11112   12344789999975


Q ss_pred             ccccceEEEEeeCCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccH-HHHHHHHHHHHHHHHHHHHHhhcC
Q 038416          224 VPGWRLGWLVTSDPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNE-AFFAKIIGLLKETADICYERIKEI  301 (387)
Q Consensus       224 ~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~  301 (387)
                       +|+|+||+++++        ++++.+.... ..+++.+++.+.++..+|+...+ ..+++..+..+++++.+.+.....
T Consensus       272 -~G~rig~v~~~~--------~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  342 (425)
T PRK08088        272 -GGFPLAGVTGRA--------EVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLKDGLLAIAEKH  342 (425)
T ss_pred             -CCCcceeeEecH--------HHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence             899999999976        6777776543 25667889999999999887543 334444444444444454444445


Q ss_pred             CCCCCCCCCCceEEEEEecCccc---ccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHH
Q 038416          302 PCITCPVKPQGAMFVMVKLNVSM---LEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERI  376 (387)
Q Consensus       302 ~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l  376 (387)
                      |.+..+ . ..|.++|+.+....   .+.......+...+ .++||.+.|+..+  .+.+|++++  .+++++++++++|
T Consensus       343 ~~~~~v-~-g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~-~~~Gv~~~~~~~~--~~~iRl~~~~~~t~~ei~~~i~~l  417 (425)
T PRK08088        343 PEIGDV-R-GLGAMIAIELFEDGDHSKPNAKLTAQIVARA-RDKGLILLSCGPY--YNVLRILVPLTIEDAQIRQGLEII  417 (425)
T ss_pred             CCeEEE-e-ccceEEEEEEecCCCCCCCCHHHHHHHHHHH-HhCCCEEecCCCC--CCEEEEECCCCcCHHHHHHHHHHH
Confidence            544322 1 22888999884311   01111234555555 5669988876443  478999996  4799999999999


Q ss_pred             HHHHHH
Q 038416          377 KAFCQR  382 (387)
Q Consensus       377 ~~~~~~  382 (387)
                      .+++++
T Consensus       418 ~~~l~~  423 (425)
T PRK08088        418 AQCFDE  423 (425)
T ss_pred             HHHHHh
Confidence            999875

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.94  E-value=6.7e-24  Score=201.33  Aligned_cols=319  Identities=18%  Similarity=0.185  Sum_probs=210.2

Q ss_pred             CCCCCcHHHHHHHHHHhcCCCCCCCCCC--CCcHHHHHHHH---HHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc-C
Q 038416           22 SLLSDSTVAEDAVVDALRTAHYNCYSPT--LGVPSARRGIA---DYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA-R   95 (387)
Q Consensus        22 ~~~~~~~~v~~a~~~~~~~~~~~~y~~~--~~~~~lr~~ia---~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-~   95 (387)
                      +++..|..+.++......   ...|.+.  .....+++.++   +++.+.+|  .+.+++.+++|++++++.++.++. +
T Consensus        78 ~~~~~p~~~~~~~~~~~~---~~~y~~~~~~~~~g~~~~~~e~~~~la~l~g--~~~~~v~~~~g~t~~~~~~~~a~~~~  152 (447)
T PRK00451         78 YDHYIPAVVDHIISRSEF---YTAYTPYQPEISQGTLQAIFEYQTMICELTG--MDVANASMYDGATALAEAALMAVRIT  152 (447)
T ss_pred             cCCcCcHHHHHHHhchhH---HHhcCCCCCccchHHHHHHHHHHHHHHHHhC--CCcceEEecCcHHHHHHHHHHHHHhc
Confidence            367777777666544321   1124330  11233555555   33355554  456689999999999999988874 7


Q ss_pred             CCCeEEEcCCCCcchHHHhhc--cCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHH
Q 038416           96 PGANILIPRPGYPLYEIHAAG--SNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKI  173 (387)
Q Consensus        96 ~g~~vl~~~p~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l  173 (387)
                      +||+|+++++.|+++...+..  ...|.+++.+++++  + .+|++++++++++++++|++++| |+||.+.+   +++|
T Consensus       153 ~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~--~-~~d~~~l~~~i~~~t~~v~l~~p-n~tG~v~~---l~~I  225 (447)
T PRK00451        153 KRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYED--G-VTDLEALEAAVDDDTAAVVVQYP-NFFGVIED---LEEI  225 (447)
T ss_pred             CCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCC--C-CCCHHHHHHhcCCCeEEEEEECC-CCCCeeCC---HHHH
Confidence            899999999999887766540  03688999998753  3 78999999999999999999999 89999965   8999


Q ss_pred             HHHHHhcCcEEee--cccccccccCCCCCccccccCCCccEEEEe---cCcccccccccceEEEEeeCCCCcccchhHHH
Q 038416          174 ARTARNLGIIVIA--DEVYNHLAFGSTPYVPMGVFGSIVPVITLG---SISKRWIVPGWRLGWLVTSDPNGILQNSGFVD  248 (387)
Q Consensus       174 ~~~~~~~~~~li~--D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~  248 (387)
                      .++|+++|+++++  |.+..++.      .....++.+   +++.   +++|.+.+.|+++||+++++        ++++
T Consensus       226 ~~~a~~~~~~~iv~~d~~~~g~~------~~~~~~~~D---~~~~s~~k~~~~~~~~Gpg~G~l~~~~--------~~~~  288 (447)
T PRK00451        226 AEIAHAGGALFIVGVDPVSLGLL------KPPGEYGAD---IVVGEGQPLGIPLSFGGPYLGFFATRK--------KLVR  288 (447)
T ss_pred             HHHHHHCCCEEEEEcChHHhccC------CCcccCCCC---EEEECCCcCCCCCCCCCCCchHHHhhH--------HHHh
Confidence            9999999999988  54432111      011222222   5554   67777778888999998865        3444


Q ss_pred             HH----------------------------HhhhhccC-CcchHHH-HHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHh
Q 038416          249 SI----------------------------KGCLNAAS-HPVTFIQ-AAVPRIVDETNEAFFAKIIGLLKETADICYERI  298 (387)
Q Consensus       249 ~~----------------------------~~~~~~~~-~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l  298 (387)
                      .+                            +....... ..+...+ .++...+....+.+++++.+++.++++++.+.|
T Consensus       289 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L  368 (447)
T PRK00451        289 QMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERL  368 (447)
T ss_pred             hCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Confidence            42                            11111111 1111122 233223333345778999999999999999999


Q ss_pred             hcCCCCCCCCCCCceEEEE--EecCcccccCCCcHHHHHHHHHHhcCeEE-EcCCccC--CCCeEEEEee--CChHhHHH
Q 038416          299 KEIPCITCPVKPQGAMFVM--VKLNVSMLEDIGDDLEFCLKLAKEESVII-LPGRTVG--MKNWLRIAFA--AEPATLED  371 (387)
Q Consensus       299 ~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~ll~~~gi~v-~~g~~~~--~~~~~Ri~~~--~~~e~~~~  371 (387)
                      ++++++.+.   .+.+|.+  ++++.       +..++..+|+++ ||.. .++..+.  ..+++|++++  .+++++++
T Consensus       369 ~~~~g~~~~---~~~~~~~~~v~~~~-------~~~~~~~~L~~~-gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~  437 (447)
T PRK00451        369 AEIGGVELF---DGPFFNEFVVRLPK-------PAEEVNEALLEK-GILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDA  437 (447)
T ss_pred             hhcCCEEec---CCCeEEEEEEecCC-------CHHHHHHHHHhc-CCCCCcccccccCCcCCEEEEecCCCCCHHHHHH
Confidence            998888743   2333433  44431       356787877554 6652 3444433  2478999994  68999999


Q ss_pred             HHHHHHHHH
Q 038416          372 GLERIKAFC  380 (387)
Q Consensus       372 ~~~~l~~~~  380 (387)
                      +++.|++++
T Consensus       438 l~~~L~~~~  446 (447)
T PRK00451        438 LVAALGEVL  446 (447)
T ss_pred             HHHHHHHHh
Confidence            999998754

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.93  E-value=7.4e-24  Score=198.41  Aligned_cols=313  Identities=14%  Similarity=0.125  Sum_probs=208.7

Q ss_pred             CcHHHHHHHHHHhcCCCCC-CCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC---------
Q 038416           26 DSTVAEDAVVDALRTAHYN-CYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR---------   95 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~-~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~---------   95 (387)
                      .+|.+.+++++++...... .+.......++.+.++++.        ..+.+++++++++|++.+++.+..         
T Consensus        58 ~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------~~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~  129 (401)
T PRK00854         58 CHPKILAAMVEQAGRLTLTSRAFRNDQLAPLYEELAALT--------GSHKVLPMNSGAEAVETAIKAVRKWGYEVKGVP  129 (401)
T ss_pred             CCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhC--------CCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCC
Confidence            3788999999998763221 1112223455666666654        235899999999999999999842         


Q ss_pred             CC-CeEEEcCCCCcchHHHhhccCCCc-------------eeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCc
Q 038416           96 PG-ANILIPRPGYPLYEIHAAGSNNNL-------------EARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPC  161 (387)
Q Consensus        96 ~g-~~vl~~~p~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~npt  161 (387)
                      +| ++|++...+|++....+.  ..+.             ++..++       ..|++++++++.+++++|++.+|+||+
T Consensus       130 ~~~~~vi~~~~~~HG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-------~~d~~~le~~i~~~~~aii~e~~~~~~  200 (401)
T PRK00854        130 EGQAEIIVCADNFHGRTLSIV--GFSTDPDARGGFGPFTPGFRVVP-------FGDAEALEAAITPNTVAFLVEPIQGEA  200 (401)
T ss_pred             CCCceEEEECCCcCCccHHHH--hccCCccccccCCCCCCCeEEeC-------CCCHHHHHHHhCCCeEEEEEccccCCC
Confidence            23 678888888877543333  2211             111121       137899999998889999999999999


Q ss_pred             cccCC-HHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCCccEEEEecCcccccccccceEEEEeeCCCC
Q 038416          162 GNVFS-YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNG  239 (387)
Q Consensus       162 G~~~~-~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~  239 (387)
                      |..++ .+++++|.++|++||+++|+||+|.++.+.+..... .....++   +++  ++|+++...+|+|++++++   
T Consensus       201 G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D---~~~--~~K~l~gg~~~ig~v~~~~---  272 (401)
T PRK00854        201 GVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEAD---VTL--IGKALSGGFYPVSAVLSNS---  272 (401)
T ss_pred             CCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCCC---EEE--ecccccCCccCeEEEEEcH---
Confidence            99887 456999999999999999999999977655432111 1111222   222  4699765447999999976   


Q ss_pred             cccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC-CCceEEEE
Q 038416          240 ILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVK-PQGAMFVM  317 (387)
Q Consensus       240 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~g~~~~  317 (387)
                           ++.+.+.... ..+++.+++.++++.+.|+...+   ....+.++++.+++.+.|+++. ...+.. ...|.++.
T Consensus       273 -----~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~~---~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~g~g~~~~  343 (401)
T PRK00854        273 -----EVLGVLKPGQHGSTFGGNPLACAVARAALKVLTE---EGMIENAAEMGAYFLEGLRSIR-SNIVREVRGRGLMLA  343 (401)
T ss_pred             -----HHHhcccCCCCCCCCCcCHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHhhc-cCceEEEeccceEEE
Confidence                 6777665432 23456788888888888865322   2355777778888888888763 221111 22244444


Q ss_pred             EecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHHH
Q 038416          318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~  381 (387)
                      +.+....    .+..++...++ ++||.+.+..    .+++|+++  ..+++++++++++|++++.
T Consensus       344 i~~~~~~----~~~~~~~~~L~-~~GV~v~~~~----~~~lR~~p~~~~t~e~i~~~i~~l~~~l~  400 (401)
T PRK00854        344 VELEPEA----GGARQYCEALK-ERGLLAKDTH----DHTIRLAPPLVITREQVDWALEQIAKVLA  400 (401)
T ss_pred             EEEecCc----hhHHHHHHHHH-HCCeEEecCC----CCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence            4442210    13456777765 4699987632    47999998  4689999999999988764

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.93  E-value=2.5e-23  Score=191.96  Aligned_cols=223  Identities=16%  Similarity=0.108  Sum_probs=163.9

Q ss_pred             CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhh-ccCCCceeeeec
Q 038416           49 TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAA-GSNNNLEARHYD  127 (387)
Q Consensus        49 ~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~-~~~~g~~~~~~~  127 (387)
                      .....+|++.+++++        ..+++++++|+++|+..++.+++++||+|+++.|.|.++...+. ....|.++..+.
T Consensus        52 np~~~~lE~~lA~l~--------g~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~  123 (385)
T PRK08574         52 NPTLRPLEEALAKLE--------GGVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAY  123 (385)
T ss_pred             CccHHHHHHHHHHHh--------CCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCcEEEEEC
Confidence            356789999999998        34578888999999999999999999999999999998766553 014576665542


Q ss_pred             cCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcccccc
Q 038416          128 LLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF  206 (387)
Q Consensus       128 ~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~  206 (387)
                              .+++++++++++ ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|+...    ...++ ..
T Consensus       124 --------~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~d---l~~I~~la~~~gi~livD~t~a~~~----~~~~l-~~  187 (385)
T PRK08574        124 --------PSTEDIIEAIKEGRTKLVFIETMTNPTLKVID---VPEVAKAAKELGAILVVDNTFATPL----LYRPL-RH  187 (385)
T ss_pred             --------CCHHHHHHhcCccCceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCccc----cCChh-hh
Confidence                    367899999987 8999999999999999988   6788999999999999999997422    11122 12


Q ss_pred             CCCccEEEEecCcccccccccc-eEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHH
Q 038416          207 GSIVPVITLGSISKRWIVPGWR-LGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKII  284 (387)
Q Consensus       207 ~~~~~~~~i~s~sK~~~~~g~r-~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  284 (387)
                         +..+++.|++|.++.+|-. .|++++.+       .++.++++..+. .+...+++..+.+...++.     +..+.
T Consensus       188 ---GaDivv~S~sK~l~g~~d~~gG~vi~~~-------~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~t-----L~~R~  252 (385)
T PRK08574        188 ---GADFVVHSLTKYIAGHNDVVGGVAVAWS-------GEFLEELWEWRRRLGTIMQPFEAYLVLRGLKT-----LEVRF  252 (385)
T ss_pred             ---CCcEEEeeCceeecCCCCceeEEEEECc-------HHHHHHHHHHHHhcCCCCCHHHHHHHHcccCc-----HHHHH
Confidence               2248999999998766654 46566643       256676665544 3445555544444443433     66777


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCC
Q 038416          285 GLLKETADICYERIKEIPCITCPVKP  310 (387)
Q Consensus       285 ~~~~~~~~~~~~~l~~~~~~~~~~~~  310 (387)
                      ++..+++..+.+.|++.|.+..+.+|
T Consensus       253 ~~~~~na~~la~~L~~~p~v~~V~yP  278 (385)
T PRK08574        253 ERQCRNAMAIAEFLSEHPKVAEVYYP  278 (385)
T ss_pred             HHHHHHHHHHHHHHHcCCCcCEEECC
Confidence            88888899999999887766544443

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.93  E-value=2.8e-23  Score=187.29  Aligned_cols=318  Identities=19%  Similarity=0.126  Sum_probs=233.4

Q ss_pred             CCCCCCCcHHHHHHHHHHhcCC-C-----CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh
Q 038416           20 GVSLLSDSTVAEDAVVDALRTA-H-----YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL   93 (387)
Q Consensus        20 ~~~~~~~~~~v~~a~~~~~~~~-~-----~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l   93 (387)
                      .|.++..+|.+.+++.++++.- .     ..-++...-+.+|++.+|+|+        ..+..++.+++-.|+..++.+|
T Consensus        48 dYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~--------g~e~al~f~SGy~AN~~~i~~l  119 (388)
T COG0156          48 DYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFL--------GAEAALLFSSGFVANLGLLSAL  119 (388)
T ss_pred             CcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHh--------CCCcEEEEcccchhHHHHHHHh
Confidence            3457889999999999999862 1     112333445788999999999        4567777777888999999999


Q ss_pred             cCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc---C---ceEEEEeCCCCCccccCCH
Q 038416           94 ARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE---N---TVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        94 ~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---~---~~~v~l~~p~nptG~~~~~  167 (387)
                      ++++|.|+...-.|-+..+..+  ..+.+++.+..       -|++.||+.+.+   +   .+.|+....-+..|.+.| 
T Consensus       120 ~~~~dli~~D~lnHASiidG~r--ls~a~~~~f~H-------nD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiAp-  189 (388)
T COG0156         120 LKKGDLIFSDELNHASIIDGIR--LSRAEVRRFKH-------NDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAP-  189 (388)
T ss_pred             cCCCcEEEEechhhhhHHHHHH--hCCCcEEEecC-------CCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCC-
Confidence            9999999999999999999999  99999988864       277888888755   2   355555566778999977 


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccc--cCCCccEEEEecCcccccccccceEEEEeeCCCCcccchh
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV--FGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSG  245 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~  245 (387)
                        +++|.+++++|+.++++||+|+...++..+......  +...+..+.++|++|+||..|   ||+.++.        .
T Consensus       190 --L~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~G---g~v~g~~--------~  256 (388)
T COG0156         190 --LPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSG---GYIAGSA--------A  256 (388)
T ss_pred             --HHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcccC---ceeeCcH--------H
Confidence              889999999999999999999987777554444333  333445799999999999887   9999876        7


Q ss_pred             HHHHHHhhhh---ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCc
Q 038416          246 FVDSIKGCLN---AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNV  322 (387)
Q Consensus       246 ~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~  322 (387)
                      +++.++....   ++.+.+|....++...++..  .....+.++++++...++..++.. ++. . .+.....+.+.+..
T Consensus       257 ~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l--~~~~~~r~~L~~~~~~~~~~~~~~-~~~-~-~~s~s~I~pv~~gd  331 (388)
T COG0156         257 LIDYLRNRARPFIFSTALPPAVAAAALAALRIL--EEGPERRERLQELAAFFRSLLKAL-GLV-L-LPSESPIIPVILGD  331 (388)
T ss_pred             HHHHHHHhCCceeccCCCCHHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHhc-CCc-c-CCCCCCeeeeEeCC
Confidence            8888887632   33445555555566666542  234667788888888888666655 555 2 34445555444432


Q ss_pred             ccccCCCcHHHHHHHHHHhcCeEEEcCCccCC---CCeEEEEee--CChHhHHHHHHHHHHH
Q 038416          323 SMLEDIGDDLEFCLKLAKEESVIILPGRTVGM---KNWLRIAFA--AEPATLEDGLERIKAF  379 (387)
Q Consensus       323 ~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---~~~~Ri~~~--~~~e~~~~~~~~l~~~  379 (387)
                      .     ....++...++++ ||.+.+......   ...+|++++  .++++|+.+++.+.+.
T Consensus       332 ~-----~~a~~~s~~l~~~-Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~  387 (388)
T COG0156         332 E-----ERALEASRALLEE-GIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV  387 (388)
T ss_pred             H-----HHHHHHHHHHHHC-CeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence            1     1345677777666 999987655443   367999994  5899999999998764

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.93  E-value=4.9e-23  Score=192.00  Aligned_cols=296  Identities=15%  Similarity=0.137  Sum_probs=201.1

Q ss_pred             CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchH----HHhhccCCCceee
Q 038416           49 TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYE----IHAAGSNNNLEAR  124 (387)
Q Consensus        49 ~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~----~~~~~~~~g~~~~  124 (387)
                      ......|++.++++.        ..++.++++|++.|+..++..++++||+|+++.+.|++..    ..+.  ..|++++
T Consensus        63 ~p~~~~Le~~lA~le--------g~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~--~~Gv~v~  132 (431)
T PRK08248         63 NPTTDVFEKRIAALE--------GGIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLP--KLGITVK  132 (431)
T ss_pred             CchHHHHHHHHHHHh--------CCCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHH--hCCEEEE
Confidence            345678889999988        3468889999999999999999999999999999997543    3455  6899988


Q ss_pred             eeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcccc
Q 038416          125 HYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMG  204 (387)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~  204 (387)
                      .++.       .|++++++++++++++|++++|+||||..++   +++|+++|+++|+++|+|++++.    +....++ 
T Consensus       133 ~vd~-------~d~e~l~~ai~~~tklV~l~sp~NPtG~v~d---i~~I~~la~~~gi~vIvD~t~a~----~~~~~pl-  197 (431)
T PRK08248        133 FVDP-------SDPENFEAAITDKTKALFAETIGNPKGDVLD---IEAVAAIAHEHGIPLIVDNTFAS----PYLLRPI-  197 (431)
T ss_pred             EECC-------CCHHHHHHhcCCCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEeCCCCc----cccCChh-
Confidence            8865       2789999999889999999999999999988   67888999999999999999873    1112222 


Q ss_pred             ccCCCccEEEEecCcccccccccceEEEEeeCCCCcc-c----------chhH---------------HHHHHhh-hhcc
Q 038416          205 VFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGIL-Q----------NSGF---------------VDSIKGC-LNAA  257 (387)
Q Consensus       205 ~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~-~----------~~~~---------------~~~~~~~-~~~~  257 (387)
                      .+   +..+++.|++|.++.+|.++|++++......+ .          ++++               ....... ...+
T Consensus       198 ~~---gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  274 (431)
T PRK08248        198 EH---GADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLG  274 (431)
T ss_pred             Hc---CCCEEEEcCccccCCCCCceEEEEEeCCccccccccccccccCCccccccchhhhhhchhhHHHHHHHHHHHhcC
Confidence            22   23488999999999999999998875322100 0          0000               0111111 1234


Q ss_pred             CCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC-----------------ceEEEEEec
Q 038416          258 SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ-----------------GAMFVMVKL  320 (387)
Q Consensus       258 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----------------~g~~~~~~~  320 (387)
                      ...+++..+.+..-|+.     +..+.++.++++..+.+.|++.|.+..+.+|.                 .|.++.+.+
T Consensus       275 ~~l~p~~a~l~~rgl~t-----l~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l  349 (431)
T PRK08248        275 AALSPFNSFLLLQGLET-----LHLRMERHSENALAVAKFLEEHEAVEWVSYPGLPSHPSYELAKKYLPKGQGAILTFGI  349 (431)
T ss_pred             CCCCHHHHHHHhcCcCc-----HHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEe
Confidence            55566555555444443     77888999999999999999988766554441                 134555555


Q ss_pred             CcccccCCCcHHHHHHHHHHhcCeEEEcCCcc----------------------CC-CCeEEEEeeCChHhHHHHHHHHH
Q 038416          321 NVSMLEDIGDDLEFCLKLAKEESVIILPGRTV----------------------GM-KNWLRIAFAAEPATLEDGLERIK  377 (387)
Q Consensus       321 ~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~----------------------~~-~~~~Ri~~~~~~e~~~~~~~~l~  377 (387)
                      ...    ......+++.+ +=..+.++-|+..                      +. ++.+|+|++.  |+.+.+++.|.
T Consensus       350 ~~~----~~~~~~f~~~l-~l~~~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl--Ed~~dL~~Dl~  422 (431)
T PRK08248        350 KGG----VEAGKKLIDSV-KLFSHLANVGDSKSLIIHPASTTHQQLSEEEQLAAGVTPGLVRLSVGT--EAIDDILDDLR  422 (431)
T ss_pred             cCC----HHHHHHHHHhC-CcceeccccCCCCeeeeCCCcCccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHH
Confidence            321    01122343333 2111111112111                      00 3579999999  67888888888


Q ss_pred             HHHHHhh
Q 038416          378 AFCQRHA  384 (387)
Q Consensus       378 ~~~~~~~  384 (387)
                      ++++..+
T Consensus       423 ~Al~~~~  429 (431)
T PRK08248        423 QAIRQSQ  429 (431)
T ss_pred             HHHHhhh
Confidence            8887654

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.93  E-value=1.2e-23  Score=194.64  Aligned_cols=295  Identities=17%  Similarity=0.144  Sum_probs=201.2

Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHH----HhhccC
Q 038416           43 YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEI----HAAGSN  118 (387)
Q Consensus        43 ~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~----~~~~~~  118 (387)
                      +..|+. ....+|++.++++.        ..+++++++|+++|+..++.+++++||+|+++.|+|..+..    .+.  .
T Consensus        59 Y~r~~~-pt~~~Le~~lA~l~--------g~~~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~--~  127 (394)
T PRK07050         59 YGLHAT-PTSLALAQRLAEIE--------GGRHALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLAR--D  127 (394)
T ss_pred             cCCCCC-HHHHHHHHHHHHHh--------CCCeEEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHH--h
Confidence            334433 45688888999887        34689999999999999999999999999999999998664    455  6


Q ss_pred             CCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCC
Q 038416          119 NNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGST  198 (387)
Q Consensus       119 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~  198 (387)
                      .|+++..++..       +.+++++++++++++|++++|+||+|..   .++++|+++|+++|+++|+|++|+...+   
T Consensus       128 ~Gi~v~~vd~~-------~~~~l~~~i~~~tklV~le~p~Np~~~~---~di~~I~~ia~~~gi~livD~a~a~~~~---  194 (394)
T PRK07050        128 FGITVRFYDPL-------IGAGIADLIQPNTRLIWLEAPGSVTMEV---PDVPAITAAARARGVVTAIDNTYSAGLA---  194 (394)
T ss_pred             cCeEEEEECCC-------CHHHHHHhcCCCCeEEEEECCCCCCccH---hhHHHHHHHHHHcCCEEEEECCcccccc---
Confidence            78888877531       3467888899999999999999999755   7799999999999999999999975221   


Q ss_pred             CCccccccCCCccEEEEecCccccc-ccccceEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhcc
Q 038416          199 PYVPMGVFGSIVPVITLGSISKRWI-VPGWRLGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETN  276 (387)
Q Consensus       199 ~~~~~~~~~~~~~~~~i~s~sK~~~-~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~  276 (387)
                       ..++. .   +..+++.|++|.++ ..+.+.|++++.+       ++++++++..+. .+.+.+++..+.+...++.  
T Consensus       195 -~~~l~-~---GaDi~v~S~tK~~~g~~~~~gG~v~~~~-------~~~~~~~~~~~~~~G~~~~~~~a~l~lr~l~t--  260 (394)
T PRK07050        195 -FKPFE-H---GVDISVQALTKYQSGGSDVLMGATITAD-------AELHAKLKLARMRLGIGVSADDCSLVLRGLPS--  260 (394)
T ss_pred             -cCHHH-c---CCeEEEEECCceecCCCCeeEEEEEECC-------HHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCc--
Confidence             11211 1   22488999999975 3456789888754       257777776554 4555666555444433433  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----------------ceEEEEEecCcccccCCCcHHHHHHHHHH
Q 038416          277 EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ----------------GAMFVMVKLNVSMLEDIGDDLEFCLKLAK  340 (387)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~  340 (387)
                         +..+.++..+++..+.+.|++.|.+..+.+|.                .|..+.+.+....  +..+..++++.+ +
T Consensus       261 ---l~~Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~--~~~~~~~~~~~l-~  334 (394)
T PRK07050        261 ---LQVRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERY--SPAQVDAFVEAL-E  334 (394)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCC--CHHHHHHHHHcC-C
Confidence               45577777777778888888876655443332                2333444443100  001233444443 4


Q ss_pred             hcCeEEEcCCccC-----------------CCCeEEEEeeCChHhHHHHHHHHHHHHHHh
Q 038416          341 EESVIILPGRTVG-----------------MKNWLRIAFAAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       341 ~~gi~v~~g~~~~-----------------~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      ..++.++-|+...                 .++.+|+|++.  |+.+.+++.|.+++...
T Consensus       335 ~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~iR~svGl--E~~~dl~~dl~~al~~~  392 (394)
T PRK07050        335 LFAIGWSWGGACSLAMPYDVASMRTAKWPHRGTLVRLYIGL--EDEADLIADLEQALEAA  392 (394)
T ss_pred             CCeeccccCCccceEeeCcccccchhhcCCCCCEEEEEeCc--CCHHHHHHHHHHHHHHh
Confidence            4444333222111                 12579999998  66777888888887764

>PRK05968 hypothetical protein; Provisional

Probab=99.93  E-value=3.2e-23  Score=191.79  Aligned_cols=285  Identities=16%  Similarity=0.097  Sum_probs=199.9

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchH----HHhhccCCCceeee
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYE----IHAAGSNNNLEARH  125 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~----~~~~~~~~g~~~~~  125 (387)
                      ....+|++.++++++        .+..+++++++.|+..++.+++++||+|+++.+.|.+..    ..+.  ..|+++..
T Consensus        63 p~~~~le~~lA~l~g--------~~~av~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~--~~G~~v~~  132 (389)
T PRK05968         63 PTVRAFEEMLAKLEG--------AEDARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILK--RMGVEVDY  132 (389)
T ss_pred             hhHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHH--HcCceEEE
Confidence            356799999999883        234555667788999999999999999999999998643    4555  68888888


Q ss_pred             eccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccc
Q 038416          126 YDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV  205 (387)
Q Consensus       126 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~  205 (387)
                      ++.       .|++++++++ +++++|++++|+|+++   +..++++|+++|+++|+++|+|++|+...+..    ++. 
T Consensus       133 vd~-------~d~~~l~~~i-~~tklV~ie~pt~~~~---~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~----p~~-  196 (389)
T PRK05968        133 VDG-------RDEEAVAKAL-PGAKLLYLESPTSWVF---ELQDVAALAALAKRHGVVTMIDNSWASPVFQR----PIT-  196 (389)
T ss_pred             eCC-------CCHHHHHHhc-ccCCEEEEECCCCCCC---cHHHHHHHHHHHHHcCCEEEEECCCcchhccC----chh-
Confidence            753       2789999888 5789999987776665   44889999999999999999999997643221    221 


Q ss_pred             cCCCccEEEEecCcccccccc-cceEEEEeeCCCCcccchhHHHHHHhhhh--ccCCcchHHHHHHHHHhhhccHHHHHH
Q 038416          206 FGSIVPVITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGFVDSIKGCLN--AASHPVTFIQAAVPRIVDETNEAFFAK  282 (387)
Q Consensus       206 ~~~~~~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~  282 (387)
                      ...   .+++.|++|.++.+| .+.|+++.++        +++++++....  .....+++..+.+...|+.     +..
T Consensus       197 ~g~---Divv~S~tK~l~g~~~~~gG~i~~~~--------~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~t-----l~~  260 (389)
T PRK05968        197 LGV---DLVIHSASKYLGGHSDTVAGVVAGSK--------EHIARINAEAYPYLGAKLSPFEAWLLLRGLRT-----LPL  260 (389)
T ss_pred             cCC---cEEEeeccccccCCCCeEEEEEEECH--------HHHHHHHHHHHHhCCCCCChHHHHHHHcccCc-----HHH
Confidence            222   378889999987654 5788888754        67777765432  3345566666655555543     577


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCC-----------ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCc
Q 038416          283 IIGLLKETADICYERIKEIPCITCPVKPQ-----------GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRT  351 (387)
Q Consensus       283 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~  351 (387)
                      +.++..++++.+.+.|+++|.+..+.+|.           .|.++.+.++..     .+..+++..| +..++.++-|..
T Consensus       261 r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~-----~~~~~f~~~L-~~~~~~~s~G~~  334 (389)
T PRK05968        261 RMKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFREG-----IDVRAFADAL-KLFRLGVSWGGH  334 (389)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECCH-----HHHHHHHHhC-CccEEecCCCCC
Confidence            77777888889999999998876565552           233455555421     1345666655 455555554443


Q ss_pred             cC----------------------C-CCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          352 VG----------------------M-KNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       352 ~~----------------------~-~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      +.                      . ++.+|+|++.  |+.+.+++.|++++++.+
T Consensus       335 ~slv~p~~~~~~~~~~~~~~~~~gi~~~liR~SvGl--E~~~dl~~dl~~al~~~~  388 (389)
T PRK05968        335 ESLVVPAEVVLQQKAQPNSAARFGVSPRSVRLHVGL--EGTEALWADLEQALAAAS  388 (389)
T ss_pred             CceeeeCcccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHHHhh
Confidence            32                      1 3589999998  667777888888876543

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.93  E-value=5.3e-23  Score=190.73  Aligned_cols=318  Identities=13%  Similarity=0.106  Sum_probs=218.1

Q ss_pred             CCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCC-CEEEcCChHHHHHHHHHhhc--CCCCe
Q 038416           23 LLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIEISLSVLA--RPGAN   99 (387)
Q Consensus        23 ~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~--~~g~~   99 (387)
                      .++.+|.+.+++.+++....  .++. ....++++.+++.+..      .++ .+++++|+++++..+++...  ..+++
T Consensus        42 ~lG~~p~v~~a~~~~~~~~~--~~~~-~~~~~~~~~la~~l~~------~~~~~~~~~~SGseA~~~Al~~ar~~~~~~~  112 (375)
T PRK04260         42 NLGFHPQVQQALQKQAGLIW--HSPN-LYLNSLQEEVAQKLIG------DKDYLAFFCNSGAEANEAAIKIARKATGKQE  112 (375)
T ss_pred             cCCCCHHHHHHHHHHHHhcC--cccC-ccCCHHHHHHHHHHhc------CcCCEEEEcCccHHHHHHHHHHHHHhcCCCe
Confidence            46668899999999987531  2222 2346788899987732      233 46889999999998888763  34578


Q ss_pred             EEEcCCCCcchH-HHhhccCCCceee----eeccCCCC-CccCChhhHHHhhccCceEEEEeCCCCCccccC-CHHHHHH
Q 038416          100 ILIPRPGYPLYE-IHAAGSNNNLEAR----HYDLLPEK-RWEVDLDGVEALADENTVAIVIINPGNPCGNVF-SYQHLQK  172 (387)
Q Consensus       100 vl~~~p~~~~~~-~~~~~~~~g~~~~----~~~~~~~~-~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~-~~~~~~~  172 (387)
                      |++.+..|++.. ..+.  ..+.+..    ...+.... ....|++.+++.+++++.+|++..++|++|... +.+.+++
T Consensus       113 vv~~~~~yHg~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~dl~~l~~~l~~~~a~vi~e~v~~~~G~~~~~~~~l~~  190 (375)
T PRK04260        113 IITFQNSFHGRTFGSMS--ATGQDKIKDGFGDGVPHFSYAIFNDLNSVKALVNKNTAAVMLELVQGESGVLPADKDFVKA  190 (375)
T ss_pred             EEEECCCcCcccHHHHh--ccCCcccCCCCCCCCCCeEEeCCCCHHHHHHhcCCCeEEEEECCeECCCCCcCCCHHHHHH
Confidence            999888888643 2322  2221110    00000000 001378899988877777888888899999975 4677999


Q ss_pred             HHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHH
Q 038416          173 IARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIK  251 (387)
Q Consensus       173 l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~  251 (387)
                      +.++|+++|+++|+||+|.++...+..... ...+.++     +.||||.++ +|+|+||+++++        ++.+.+.
T Consensus       191 ~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pd-----i~t~sK~l~-~G~~ig~~~~~~--------~~~~~~~  256 (375)
T PRK04260        191 LADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPD-----IFTLAKGLA-NGVPVGAMLAKS--------SLGGAFG  256 (375)
T ss_pred             HHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCC-----EEEeccccc-CCcceEEEEEcH--------HHHhhcC
Confidence            999999999999999999987655542221 2223332     448999964 789999999976        6666665


Q ss_pred             hhh-hccCCcchHHHHHHHHHhhhcc-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCC
Q 038416          252 GCL-NAASHPVTFIQAAVPRIVDETN-EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIG  329 (387)
Q Consensus       252 ~~~-~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  329 (387)
                      ... ..++..+++.+.++.++|+... ++.+++..+..+..++.+.+.+.+.+.+..  .+..|.++|+.+..       
T Consensus       257 ~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~g~~~~~~~~~-------  327 (375)
T PRK04260        257 YGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQDKETVTT--VRGLGYMIGIETTA-------  327 (375)
T ss_pred             CCCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCeeE--EeccceEEEEEecC-------
Confidence            432 2456678888998888887643 345566666777777777777766643331  23478899988743       


Q ss_pred             cHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHH
Q 038416          330 DDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAF  379 (387)
Q Consensus       330 ~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~  379 (387)
                      +..++...+ .++||.+.|+.    .+.+|+++.  .+++++++++++|+++
T Consensus       328 ~~~~~~~~l-~~~Gi~v~~~~----~~~lR~~~~~~~t~~~i~~~l~~l~~~  374 (375)
T PRK04260        328 DLSQLVEAA-RDKGLIVLTAG----TNVIRLLPPLTLTKEEIEQGIAILSEV  374 (375)
T ss_pred             cHHHHHHHH-HhCCCEEecCC----CCEEEEcCCCccCHHHHHHHHHHHHHh
Confidence            345666655 56799998753    478999993  5799999999999765

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=99.93  E-value=1.2e-23  Score=186.73  Aligned_cols=336  Identities=16%  Similarity=0.127  Sum_probs=213.0

Q ss_pred             CCCcHHHHHHHHHHhcC----CCCCCCCCC--CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc-CC
Q 038416           24 LSDSTVAEDAVVDALRT----AHYNCYSPT--LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA-RP   96 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~----~~~~~y~~~--~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~   96 (387)
                      -|.++.|+++|++....    .+...|+..  ...++.|+.+|+++      +.++++|++|+|+|++++++++... ..
T Consensus        53 ~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklI------nAd~~dIiFts~ATEs~Nlvl~~v~~~~  126 (428)
T KOG1549|consen   53 GPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLI------NADPSDIVFTSGATESNNLVLKGVARFF  126 (428)
T ss_pred             CCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHh------CCCCCcEEEeCCchHHHHHHHHHhhccc
Confidence            46899999999998775    222224442  23688899999999      4588889999999999999999974 33


Q ss_pred             CC----eEEEcCCCCcchHHHhh-ccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHH
Q 038416           97 GA----NILIPRPGYPLYEIHAA-GSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQ  171 (387)
Q Consensus        97 g~----~vl~~~p~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~  171 (387)
                      +|    +|++.+-.|.+.....+ .-..|+++.++|+.  +.+.+|.+.++++++++|+++.+.+.+|-+|+.+|   ++
T Consensus       127 ~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~--~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~P---v~  201 (428)
T KOG1549|consen  127 GDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVE--DSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQP---VK  201 (428)
T ss_pred             cccccceEEEecccCcchhHHHHHHHhcCeEEEEeccC--ccccccHHHHHHhcCCCceEEEEEecccCcccccc---HH
Confidence            45    89988888876543333 11688999999986  44578999999999999999999999999999999   89


Q ss_pred             HHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeC-CCCcccchhHHHHH
Q 038416          172 KIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSD-PNGILQNSGFVDSI  250 (387)
Q Consensus       172 ~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~-~~~~~~~~~~~~~~  250 (387)
                      +|.++|+++++.+++|.+++-    |+-...+..++.+   +...|.+|+||.+|  +|++++++ ...+...|.+....
T Consensus       202 EI~~icr~~~v~v~~DaAQav----G~i~vDV~eln~D---~~s~s~HK~ygp~~--iGaLYvr~~~~~~~~~p~~~GGg  272 (428)
T KOG1549|consen  202 EIVKICREEGVQVHVDAAQAV----GKIPVDVQELNAD---FLSISAHKIYGPPG--IGALYVRRKRPRLRVEPPLSGGG  272 (428)
T ss_pred             HHHHHhCcCCcEEEeehhhhc----CCccccHHHcCch---heeeecccccCCCc--ceEEEEccCCCcccccCcccCCc
Confidence            999999999999999999996    5555566667665   77889999999999  89999985 22111112221111


Q ss_pred             HhhhhccCCcchHHHHHHHHHhhhcc--HHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCCCCCCc--eEEEEEecCcccc
Q 038416          251 KGCLNAASHPVTFIQAAVPRIVDETN--EAFFAKIIGLLKETADICYERIK-EIPCITCPVKPQG--AMFVMVKLNVSML  325 (387)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~--g~~~~~~~~~~~~  325 (387)
                      ....-..++..++.+..+..+.+...  ..+...+..+   ..+.+...+. .++.+.....+..  ...+.+.++.  .
T Consensus       273 q~r~~rsGT~~~~~~~~~gsA~e~~~~~~~~~~~~~~~---~~~~ll~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~--~  347 (428)
T KOG1549|consen  273 QERGLRSGTVATPLAVGLGSAAEFVNKEMAYDEAIIKR---LSEKLLMGIGQSLPEVTLNGSGKSRYPGLVSLSFPY--V  347 (428)
T ss_pred             cccccccCCcCchhhhhhHHHHHHHHhhcchhHHHHHH---HHHHHHHHHhhhCchhhccCCcccccccceeeeccc--c
Confidence            11111234555556666555554321  1222222222   3333333332 2333322211111  1112222330  0


Q ss_pred             cCCCcHHHHHHHHHHhcCeEEE-----c-------CC-ccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHhhh
Q 038416          326 EDIGDDLEFCLKLAKEESVIIL-----P-------GR-TVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       326 ~~~~~~~~~~~~ll~~~gi~v~-----~-------g~-~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      .+..-..+.....+.. |....     |       |. .+.....+||+++  ++++|++.+.+.+++.+..++.
T Consensus       348 ~g~~~~~~~~~~~l~s-~~a~~~~~~epsy~l~~~G~~~~~~~~~iRis~G~y~t~~di~~~~~~i~~~v~~~~~  421 (428)
T KOG1549|consen  348 EGESLLMDLKDVALSS-GSACTSASLEPSYVLRAIGVDEDLAHSSIRISIGRYTTEEDIDYLVDAIKKLVSLLRE  421 (428)
T ss_pred             cCcchhhhhhhhhhcc-cchhhcCCCCcchhhhhcCcchhhhcceeEEeeeeeCcHHHHHHHHHHHHHHHHhccc
Confidence            0100001111111111 11110     1       01 1112578999995  5899999999999999887765

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.93  E-value=3.1e-23  Score=194.29  Aligned_cols=326  Identities=15%  Similarity=0.138  Sum_probs=206.4

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC----------
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR----------   95 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~----------   95 (387)
                      .+|.+.+++.+++.....  .+.. -..+..+.+.+.+.+..    ..+.++++++|++|++.+++.+.+          
T Consensus        48 ~~p~v~~a~~~~~~~~~~--~~~~-~~~~~~~~~~~~l~~~~----~~~~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~  120 (400)
T PTZ00125         48 CHPKILAALINQAQKLTL--TSRA-FYNDVLGLAEKYITDLF----GYDKVLPMNSGAEAGETALKFARKWGYEVKGIPE  120 (400)
T ss_pred             CCHHHHHHHHHHHHhccc--cccc-ccCHHHHHHHHHHHhCC----CCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCC
Confidence            578899999998864321  1111 11223344444443322    236889999999999999997741          


Q ss_pred             CCCeEEEcCCCCcchHHHhhccCCCceee---eeccCCC--CCccCChhhHHHhhc-cCceEEEEeCCCCCccccCC-HH
Q 038416           96 PGANILIPRPGYPLYEIHAAGSNNNLEAR---HYDLLPE--KRWEVDLDGVEALAD-ENTVAIVIINPGNPCGNVFS-YQ  168 (387)
Q Consensus        96 ~g~~vl~~~p~~~~~~~~~~~~~~g~~~~---~~~~~~~--~~~~~~~~~l~~~~~-~~~~~v~l~~p~nptG~~~~-~~  168 (387)
                      .+++|++.+.+|++...... +..+....   ..+..+.  .-...|+++++++++ +++++|++..++||+|..++ .+
T Consensus       121 ~~~~vl~~~~~~Hg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~v~~ep~~~~~G~~~~~~~  199 (400)
T PTZ00125        121 NQAKIIFCNGNFSGRTIGAC-SASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQDPNVAAFIVEPIQGEAGVIVPDDG  199 (400)
T ss_pred             CCCeEEEECCCcCCccHHHH-hhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhCCCCeEEEEEcCccCCCCCccCCHH
Confidence            34789988888887543333 01121110   0011000  000127899999886 56788888778999999886 45


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      .+++|.++|++||+++|+||+|.++.+.|..+.. .....++     +.+++|.++.+++|+||+++++        +++
T Consensus       200 ~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd-----~~~~sK~l~~g~~~ig~v~~~~--------~~~  266 (400)
T PTZ00125        200 YLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPD-----IVLLGKALSGGLYPISAVLAND--------DVM  266 (400)
T ss_pred             HHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCC-----EEEEcccccCCCcCcEEEEEcH--------HHH
Confidence            6999999999999999999999887665542211 1122222     2347899865556999999976        677


Q ss_pred             HHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcC----CCCCCCCCCCceEEEEEecCc
Q 038416          248 DSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEI----PCITCPVKPQGAMFVMVKLNV  322 (387)
Q Consensus       248 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~g~~~~~~~~~  322 (387)
                      +.+.... ..+++.+++.+.++.+.++...++.+   .++..++.+.+++.|+++    +.+..+ .+ .|.++++.++.
T Consensus       267 ~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~~~---~~~~~~~~~~l~~~l~~l~~~~~~~~~~-~~-~g~~~~v~~~~  341 (400)
T PTZ00125        267 LVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKL---AENAQRLGEVFRDGLKELLKKSPWVKEI-RG-KGLLNAIVFDH  341 (400)
T ss_pred             hhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHhcCCCeEEE-ec-ccEEEEEEEcc
Confidence            7765432 23456778888888776664332222   233334445555555442    222212 23 56677777753


Q ss_pred             ccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHHHHhhh
Q 038416          323 SMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       323 ~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      ..  + .+...+...++ ++||.+.|+.    .+++||++  ..+++++++++++|.++++++..
T Consensus       342 ~~--~-~~~~~~~~~l~-~~Gv~v~~~~----~~~lRi~~~~~~~~~~i~~~l~~l~~~l~~~~~  398 (400)
T PTZ00125        342 SD--G-VNAWDLCLKLK-ENGLLAKPTH----DNIIRFAPPLVITKEQLDQALEIIKKVLKSFDS  398 (400)
T ss_pred             Cc--c-hHHHHHHHHHH-HCCeEEeecC----CCEEEEECCccCCHHHHHHHHHHHHHHHHHHhc
Confidence            11  0 13456666664 6699998863    57899997  47899999999999999988754

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.93  E-value=5.4e-23  Score=190.21  Aligned_cols=294  Identities=14%  Similarity=0.162  Sum_probs=196.8

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHH----hhccCCCceeee
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIH----AAGSNNNLEARH  125 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~----~~~~~~g~~~~~  125 (387)
                      +....|++.++++.        .....+.++|++.|+.+++.+++++||+|+++.++|.+....    +.  ..|+++..
T Consensus        61 Ptv~~lE~~la~le--------g~~~av~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~--~~Gi~v~~  130 (432)
T PRK06702         61 PTLAAFEQKLAELE--------GGVGAVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLR--KLGIDVTF  130 (432)
T ss_pred             cHHHHHHHHHHHHh--------CCCcEEEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHH--HCCCEEEE
Confidence            45688899999988        335688899999999999999999999999999999876665    56  78999888


Q ss_pred             eccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccc
Q 038416          126 YDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV  205 (387)
Q Consensus       126 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~  205 (387)
                      ++.      .+|+++++++++++|++|++.+|+||++.+++   +++|+++|+++|+++|+|++++.-..    ..++ .
T Consensus       131 vd~------~~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~D---i~~I~~iA~~~gi~livD~T~~tP~~----~~pl-~  196 (432)
T PRK06702        131 FNP------NLTADEIVALANDKTKLVYAESLGNPAMNVLN---FKEFSDAAKELEVPFIVDNTLATPYL----CQAF-E  196 (432)
T ss_pred             ECC------CCCHHHHHHhCCcCCeEEEEEcCCCccccccC---HHHHHHHHHHcCCEEEEECCCCchhh----CChh-h
Confidence            753      35889999999999999999999999999977   89999999999999999999862110    1111 2


Q ss_pred             cCCCccEEEEecCcccc-----cccccce-----EEEEeeCCCCcccc--------------hhHHHHHH--hhhhccCC
Q 038416          206 FGSIVPVITLGSISKRW-----IVPGWRL-----GWLVTSDPNGILQN--------------SGFVDSIK--GCLNAASH  259 (387)
Q Consensus       206 ~~~~~~~~~i~s~sK~~-----~~~g~r~-----G~i~~~~~~~~~~~--------------~~~~~~~~--~~~~~~~~  259 (387)
                      ...   .+++.|+||..     +++|.++     +|...++......+              +++..+.+  ..+..+..
T Consensus       197 ~GA---DIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  273 (432)
T PRK06702        197 HGA---NIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNC  273 (432)
T ss_pred             cCC---CEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHHHHccCC
Confidence            222   39999999944     4444443     33332211111000              01111111  22234567


Q ss_pred             cchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC-----------------ceEEEEEecCc
Q 038416          260 PVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ-----------------GAMFVMVKLNV  322 (387)
Q Consensus       260 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----------------~g~~~~~~~~~  322 (387)
                      ++++..+.+...|+.     ++.+.++.++++..+.+.|++.|.+..+.+|.                 .|-++.+.+..
T Consensus       274 ~sp~~a~l~~rgL~T-----l~lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~~~p~~~l~~~~~~~g~gg~~sf~l~~  348 (432)
T PRK06702        274 MSPFNAYISNIGLET-----LHLRMERHSENALAVAKWLADHERIEWVNYPGLDSNENYSLAQKYLKKGASGVLTFGIKG  348 (432)
T ss_pred             CCHHHHHHHHhccCc-----HHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecC
Confidence            788877777776765     67777888899999999999887665444441                 23345555531


Q ss_pred             ccccCCCcHHHHHHHHHHhcCeEEEcCC----------cc------------CC-CCeEEEEeeCChHhHHHHHHHHHHH
Q 038416          323 SMLEDIGDDLEFCLKLAKEESVIILPGR----------TV------------GM-KNWLRIAFAAEPATLEDGLERIKAF  379 (387)
Q Consensus       323 ~~~~~~~~~~~~~~~ll~~~gi~v~~g~----------~~------------~~-~~~~Ri~~~~~~e~~~~~~~~l~~~  379 (387)
                      .    ......+++.+ +=..+.++-|+          .-            +. ++.+|+|++.  |+.+.+++.|.++
T Consensus       349 ~----~~~~~~f~~~l-~l~~~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGl--Ed~eDLi~Dl~~A  421 (432)
T PRK06702        349 G----LEAAKEFIANV-KLATLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTSDLIRLSVGI--EDVSDIIADLEAA  421 (432)
T ss_pred             C----HHHHHHHHHhC-ccceeccccCCCCcceECCCCCCcccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHH
Confidence            0    01122333332 21112111111          00            00 3579999999  6788888888888


Q ss_pred             HHH
Q 038416          380 CQR  382 (387)
Q Consensus       380 ~~~  382 (387)
                      +..
T Consensus       422 l~~  424 (432)
T PRK06702        422 LVG  424 (432)
T ss_pred             Hhc
Confidence            865

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.93  E-value=1.2e-22  Score=192.76  Aligned_cols=337  Identities=12%  Similarity=0.063  Sum_probs=221.3

Q ss_pred             CCCCCcHHHHHHHHHHhcCCCCCCC---CCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHH--HH-hhcC
Q 038416           22 SLLSDSTVAEDAVVDALRTAHYNCY---SPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEIS--LS-VLAR   95 (387)
Q Consensus        22 ~~~~~~~~v~~a~~~~~~~~~~~~y---~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~--~~-~l~~   95 (387)
                      +++..+|.+.+++.+......+..|   +..+|..+++..+.+++.+.+|.  +...+..++|+++.+..+  ++ .+.+
T Consensus        78 ~~~~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~--~~~~l~~~~GA~a~~~~l~~~r~~~~~  155 (481)
T PRK04366         78 CTMKYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGM--DAVTLQPAAGAHGELTGLLMIRAYHEA  155 (481)
T ss_pred             cCCCCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCC--CceEEEeCcHHHHHHHHHHHHHHHhhc
Confidence            3778899999999886322334566   34678889999999999887774  333344444444444322  22 3356


Q ss_pred             CCC----eEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHH
Q 038416           96 PGA----NILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQ  171 (387)
Q Consensus        96 ~g~----~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~  171 (387)
                      +||    +|+++.|+|+.+...+.  ..|++++.++++  .++.+|+++|++++++++++|++++|+ |||..  ..+++
T Consensus       156 ~Gd~~~~~Vlv~~~~hp~~~~~~~--~~G~~vv~v~~~--~~~~~D~e~L~~~i~~~t~~V~v~~Pn-~tG~~--~~dl~  228 (481)
T PRK04366        156 RGDTKRTEVIVPDSAHGTNPASAA--MAGFKVVEIPSN--EDGLVDLEALKAAVGEDTAALMLTNPN-TLGLF--ERNIL  228 (481)
T ss_pred             cCcCCCCEEEEcCCccHhHHHHHH--HcCCEEEEeecC--CCCCcCHHHHHhhcccCCeEEEEeCCC-Ccccc--chHHH
Confidence            665    99999999999999999  999999999874  346789999999999899999999998 99965  35699


Q ss_pred             HHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCccccccc----ccceEEEEeeCCCCcccchhHH
Q 038416          172 KIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVP----GWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       172 ~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~----g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      +|+++|+++|+++|+|.++..... +.  .+...+..+   +++++.+|+|+.|    |..+|++.+++        ++.
T Consensus       229 eI~~~a~~~gal~iVD~a~~~~~~-g~--~~~~~~GaD---~~~~~~hK~l~~P~g~Ggp~~G~l~~~~--------~~~  294 (481)
T PRK04366        229 EIAEIVHEAGGLLYYDGANLNAIL-GK--ARPGDMGFD---VVHLNLHKTFSTPHGGGGPGSGPVGVKE--------ELA  294 (481)
T ss_pred             HHHHHHHHcCCEEEEEecChhhhc-cc--CCccccCCC---EEEEechhhcCCCCCCCCCCeeeeeehh--------hhH
Confidence            999999999999999999863211 11  122233333   8889999998643    45578887764        222


Q ss_pred             HHHH-----------------hh---hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 038416          248 DSIK-----------------GC---LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCP  307 (387)
Q Consensus       248 ~~~~-----------------~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  307 (387)
                      +.+.                 ..   +...++.+.....++...+.....+.+++..++...+++++.+.|+++..+. .
T Consensus       295 ~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~~~~~-~  373 (481)
T PRK04366        295 PFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDIYDLP-Y  373 (481)
T ss_pred             hhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCccc-C
Confidence            2221                 00   0011122223344444455555566778888888888999999998862333 1


Q ss_pred             CCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccC-CCCeEEEEe--eCChHhHHHHHHHHHHHHHHhh
Q 038416          308 VKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG-MKNWLRIAF--AAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       308 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~-~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      ..+.. .-+.+.++....++. +..++...| .++||.+....... ..+++|+++  ..++++++.+++.|+++.++..
T Consensus       374 ~~~~~-~~~~~~~~~~~~~g~-~~~~v~~~L-~~~Gi~~~~~~~p~~~~~~l~is~~e~~t~edid~l~~~l~~i~~~~~  450 (481)
T PRK04366        374 DRPCM-HEFVLSGKKLKETGV-RTLDIAKRL-LDYGFHPPTIYFPLIVPEALMIEPTETESKETLDAFIAAMKQIAEEAK  450 (481)
T ss_pred             CCCee-EEEEEECccccccCC-CHHHHHHHH-HHCCccCCccccccccCCeEEEcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            11111 112233321111111 455666666 56698765211111 256899999  4689999999999999887765


Q ss_pred             h
Q 038416          385 K  385 (387)
Q Consensus       385 ~  385 (387)
                      +
T Consensus       451 ~  451 (481)
T PRK04366        451 E  451 (481)
T ss_pred             h
Confidence            3

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.93  E-value=2.2e-23  Score=190.67  Aligned_cols=286  Identities=18%  Similarity=0.170  Sum_probs=195.9

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccC
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLL  129 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~  129 (387)
                      ....+|++.++++.        ..+++++++|+++|+..++. ++++||+|+++.+.|......+.  ...... .+.+ 
T Consensus        54 p~~~~le~~lA~le--------g~~~~v~~~sG~aAi~~~l~-~l~~GD~VI~~~~~yg~~~~~~~--~~~~~~-~~~~-  120 (364)
T PRK07269         54 PTRAKLEETLAAIE--------SADYALATSSGMSAIVLAFS-VFPVGSKVVAVRDLYGGSFRWFN--QQEKEG-RFHF-  120 (364)
T ss_pred             ccHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHH-HhCCCCEEEEecCCcCchHHHHH--HHHhcC-cEEE-
Confidence            56789999999998        46799999999999999995 56899999999999986655433  211000 0111 


Q ss_pred             CCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCC
Q 038416          130 PEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSI  209 (387)
Q Consensus       130 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~  209 (387)
                         .+..|+++++++++++|++|++++|+||+|...+   +++|+++|+++|+++|+|++|....+ .   .++. ... 
T Consensus       121 ---~~~~d~~~l~~~i~~~TklV~lesP~NPtg~~~d---i~~I~~la~~~gi~vvvD~t~~~~~~-~---~pl~-~ga-  188 (364)
T PRK07269        121 ---TYANTEEELIAAIEEDTDIVYIETPTNPLMVEFD---IEKVAKLAHAKGAKVIVDNTFYSPIY-Q---RPIE-LGA-  188 (364)
T ss_pred             ---EecCCHHHHHHhcCcCceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCccccc-C---Cchh-hCC-
Confidence               1235889999999999999999999999998865   88999999999999999999764221 1   2221 222 


Q ss_pred             ccEEEEecCcccccccc-cceEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHH
Q 038416          210 VPVITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLL  287 (387)
Q Consensus       210 ~~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  287 (387)
                        .+++.|++|.++..| .=.|++++++       +++.++++..+. .+...+++..+.+...|+.     +..+.++.
T Consensus       189 --Divv~S~tK~l~g~~d~~gG~v~~~~-------~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~t-----L~~r~~~~  254 (364)
T PRK07269        189 --DIVLHSATKYLSGHNDVLAGVVVTND-------LELYEKLFYNLNTTGAVLSPFDSYLLMRGLKT-----LSLRMERS  254 (364)
T ss_pred             --cEEEecCceeccCCCcccceEEEeCc-------HHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCc-----HHHHHHHH
Confidence              389999999976544 2357777654       256676665443 3455677666666555654     78888889


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHH---------HHhcCeEEEcCCccCC----
Q 038416          288 KETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKL---------AKEESVIILPGRTVGM----  354 (387)
Q Consensus       288 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l---------l~~~gi~v~~g~~~~~----  354 (387)
                      ++++..+.+.|++.|.+..+.+|..|-.+.+.+...     .....++..+         .....+.+.|+..++.    
T Consensus       255 ~~na~~~a~~L~~~p~v~~v~ypg~gg~~sf~~~~~-----~~~~~f~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~~  329 (364)
T PRK07269        255 TANAQEVVAFLKKSPAVKEVLYTGKGGMISFKVADE-----TRIPHILNSLKVFTFAESLGGVESLITYPTTQTHADIPA  329 (364)
T ss_pred             HHHHHHHHHHHHhCCCccEEeCCCcCcEEEEEECCH-----HHHHHHHHhCCcceEccCCCCcCeEeeCCcccccccCCH
Confidence            999999999999998776565555444444444210     0122233222         1112334445432211    


Q ss_pred             ---------CCeEEEEeeCChHhHHHHHHHHHHHHH
Q 038416          355 ---------KNWLRIAFAAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       355 ---------~~~~Ri~~~~~~e~~~~~~~~l~~~~~  381 (387)
                               ++.+|+|++.  |+.+.+++.|.++++
T Consensus       330 ~~r~~~Gi~~~liRlsvGl--E~~~dli~dl~~al~  363 (364)
T PRK07269        330 EVRHSYGLTDDLLRLSIGI--EDARDLIADLKQALE  363 (364)
T ss_pred             HHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHhc
Confidence                     3579999999  577888888887764

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.93  E-value=8.1e-23  Score=190.39  Aligned_cols=340  Identities=15%  Similarity=0.142  Sum_probs=213.2

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCC-C-CCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAH-Y-NCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI   86 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~-~-~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~   86 (387)
                      .+.+..-|....+-++ .+|.+.+++++++.+.. . ..++ .....+|.+.++++.        ..+.+++++++++|+
T Consensus        36 ~ylD~~~g~~~~~lGh-~~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~la~~L~~~~--------~~~~~~f~~SGseA~  105 (397)
T TIGR03246        36 EYIDFAGGIAVNALGH-AHPELVKALIEQADKLWHIGNGYT-NEPVLRLAKKLVDAT--------FADKVFFCNSGAEAN  105 (397)
T ss_pred             EEEECCcCHhhccCCC-CCHHHHHHHHHHHHhcccccCccC-CHHHHHHHHHHHhhC--------CCCEEEEeCCcHHHH
Confidence            4555544432233355 58999999999987521 1 1111 112234555555443        236999999999999


Q ss_pred             HHHHHhhc-------CCC-CeEEEcCCCCcchHHHhhccCCCceeee---eccCCCC-C-ccCChhhHHHhhccCceEEE
Q 038416           87 EISLSVLA-------RPG-ANILIPRPGYPLYEIHAAGSNNNLEARH---YDLLPEK-R-WEVDLDGVEALADENTVAIV  153 (387)
Q Consensus        87 ~~~~~~l~-------~~g-~~vl~~~p~~~~~~~~~~~~~~g~~~~~---~~~~~~~-~-~~~~~~~l~~~~~~~~~~v~  153 (387)
                      +.+++...       ++| ++|+..+.+|++...... +..+.....   -|..+.- . ...|++++++.+.+++.+|+
T Consensus       106 e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aavi  184 (397)
T TIGR03246       106 EAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTV-SVGGQPKYSQGFAPLPGGIKHAPYNDLAAAKALISDKTCAVI  184 (397)
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHH-HhcCCcccccCCCCCCCceEEeCCCCHHHHHHHhccCeEEEE
Confidence            99999862       123 678888888887643332 022211100   0000000 0 01278999998877777777


Q ss_pred             EeCCCCCccccC-CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEE
Q 038416          154 IINPGNPCGNVF-SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWL  232 (387)
Q Consensus       154 l~~p~nptG~~~-~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i  232 (387)
                      +..++++.|... +.+.+++|.++|++||+++|+||+|.++...|.... ...++..   ..+.+++|.++ +|+++|++
T Consensus       185 ~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a-~~~~gv~---pDi~t~~K~lg-gG~pigav  259 (397)
T TIGR03246       185 VEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYA-YMHYGVT---PDILTSAKALG-GGFPIGAM  259 (397)
T ss_pred             EecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchh-hhhcCCC---CCEEEeehhhh-CCcceeEE
Confidence            775566777654 789999999999999999999999988866654322 1122211   22347899976 78999999


Q ss_pred             EeeCCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCC-C
Q 038416          233 VTSDPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPC-ITCPV-K  309 (387)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~-~  309 (387)
                      ++++        ++.+.+.... ..+++.+++.+.++.+.|+...+   .+..++++++.+++.+.|+++.. ..++. .
T Consensus       260 ~~~~--------~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~~~~l~~~L~~l~~~~~~~~~v  328 (397)
T TIGR03246       260 LTTT--------EIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNT---PELLAGVKQRHDLFVDGLEKINARYNVFSEI  328 (397)
T ss_pred             EEcH--------HHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHhcCCCeEee
Confidence            9976        6777665432 23456788888888777765322   34566777777777777776421 11110 1


Q ss_pred             CCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHHHHh
Q 038416          310 PQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       310 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      +..|.++.+.+....   ......+...+ .++|+.+.+..    .+++|+++  ..+++++++++++|.++++++
T Consensus       329 rg~G~~~~i~~~~~~---~~~~~~~~~~l-~~~Gv~~~~~g----~~~lR~~p~~~~t~~~i~~~~~~l~~~l~~~  396 (397)
T TIGR03246       329 RGKGLLIGAVLTEAY---QGKAKQFVNAA-AEEGVIALIAG----PNVVRFAPSLVISDDDIDEGLARFERAIEQV  396 (397)
T ss_pred             ecCceEEEEEEcCch---hhHHHHHHHHH-HHCCeEEeecC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            223445455443210   01234566655 56699987632    47899976  568999999999999988753

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.92  E-value=6.3e-23  Score=181.31  Aligned_cols=341  Identities=14%  Similarity=0.149  Sum_probs=221.4

Q ss_pred             cccCCCCCCCCCCCCCC-CcHHHHHHHHHHhcCC-CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHH
Q 038416            9 TRHSPWPRRPLGVSLLS-DSTVAEDAVVDALRTA-HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI   86 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~-~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~   86 (387)
                      .|+|+.-|.- .. .++ .+|.+.++++++.+.- +.++..    +++.+..+++.+.+..  + ..+.|++++|+++|+
T Consensus        43 ~YlDf~~Gia-v~-~lGH~hP~iv~al~~Q~~kl~h~sn~~----~~~~~~~la~~L~~~s--~-~~d~vff~NSGaEA~  113 (404)
T COG4992          43 EYLDFAAGIA-VN-NLGHCHPALVEALKEQAEKLWHVSNLF----YNEPQAELAEKLVELS--P-FADRVFFCNSGAEAN  113 (404)
T ss_pred             Eeeeecccee-ee-ccCCCCHHHHHHHHHHHHHhhhccccc----CChHHHHHHHHHHhhC--c-cccEEEEcCCcHHHH
Confidence            4555544432 11 234 7899999999988762 111111    1234455555554422  2 378999999999999


Q ss_pred             HHHHHhhcC----C-CCeEEEcCCCCcchHHHhhccCCCceeeee----ccCCCCCc--cCChhhHHHhhccCceEEEEe
Q 038416           87 EISLSVLAR----P-GANILIPRPGYPLYEIHAAGSNNNLEARHY----DLLPEKRW--EVDLDGVEALADENTVAIVII  155 (387)
Q Consensus        87 ~~~~~~l~~----~-g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~--~~~~~~l~~~~~~~~~~v~l~  155 (387)
                      +.++....+    + ..+|+.....|++-.....  ..+.+..+.    |+.+.-.+  -=|+++++++++++|.+|++.
T Consensus       114 EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~gal--S~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~ai~~~taAvivE  191 (404)
T COG4992         114 EAALKLARKYTGDPEKSKIIAFENSFHGRTLGAL--SATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAIDEDTAAVIVE  191 (404)
T ss_pred             HHHHHHHHHHcCCCCCcEEEEEcCCcCCccceee--eccCChhhccCCCCCCCCceecCCCCHHHHHHHhccCeEEEEEe
Confidence            999998642    2 2488888888886332222  222222111    22111000  017899999999999888888


Q ss_pred             CCCCCccccC-CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEe
Q 038416          156 NPGNPCGNVF-SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVT  234 (387)
Q Consensus       156 ~p~nptG~~~-~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~  234 (387)
                      .-+...|+.+ +++.++++.++|++||+++|.||++.++...|+-+..- .+.-   ...|.++.|.+ ..|+++|.+++
T Consensus       192 PIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e-~~gV---~PDI~tlaK~L-gGG~PigA~la  266 (404)
T COG4992         192 PIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYE-HYGV---EPDILTLAKAL-GGGFPIGAMLA  266 (404)
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHH-HhCC---CCCEEEeeccc-cCCccceeeEE
Confidence            7799999975 55559999999999999999999999998887644321 1111   12244778995 56699999999


Q ss_pred             eCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCc
Q 038416          235 SDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAF-FAKIIGLLKETADICYERIKEIPCITCPVKPQG  312 (387)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  312 (387)
                      .+        .+.+.+..-.+ .+++.+++++++..+.|+...++. +++..+.-...++.+.+...++|-+.  ....-
T Consensus       267 ~~--------~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~e~ll~~v~~~g~~~~~~L~~l~~~~~~v~--~vRG~  336 (404)
T COG4992         267 TE--------EIASAFTPGDHGSTFGGNPLACAVALAVLEVLLEEGLLENVREKGEYLLQRLRELKRRYPLVK--EVRGR  336 (404)
T ss_pred             ch--------hhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhcCCcee--eeecc
Confidence            64        34444443332 578899999999988888654333 33333333334444443333444222  23455


Q ss_pred             eEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHhhh
Q 038416          313 AMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       313 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      |.++-+.+....     ...+++..+ ++.|+++.+..    ++.+|+.+.  .+++++++++++|+++++....
T Consensus       337 GLmiGiel~~~~-----~a~~~~~~~-~~~gvL~~~a~----~~ViR~~PpL~i~~eei~~~~~~l~~~l~~~~~  401 (404)
T COG4992         337 GLMIGIELKEPY-----RARDIVRAL-REEGVLVLPAG----PNVIRFLPPLVITEEEIDEALDALERALAAASA  401 (404)
T ss_pred             eeEEEEEecCcc-----cHHHHHHHH-HHCCeEEecCC----CCeEEecCCccCCHHHHHHHHHHHHHHHHHhhh
Confidence            777777776421     245666655 67799998764    579999994  5899999999999999987654

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.92  E-value=7.2e-23  Score=188.74  Aligned_cols=290  Identities=15%  Similarity=0.129  Sum_probs=200.1

Q ss_pred             CCCCC--CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHH----HhhccC
Q 038416           45 CYSPT--LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEI----HAAGSN  118 (387)
Q Consensus        45 ~y~~~--~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~----~~~~~~  118 (387)
                      .|...  ....+|++.++++++        .++++++++++.++..++. ++++||+|+++.+.|.++..    .+.  .
T Consensus        40 ~Y~r~~~p~~~~le~~la~l~g--------~~~~l~~~sG~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~--~  108 (378)
T TIGR01329        40 DYTRSGNPTRTALESLLAKLDK--------ADRAFAFSSGMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLTQVVP--R  108 (378)
T ss_pred             ccCCCCChHHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHHHHHH--H
Confidence            45542  235677777777762        2567777778889998776 77999999999999987654    345  6


Q ss_pred             CCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCC
Q 038416          119 NNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGST  198 (387)
Q Consensus       119 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~  198 (387)
                      .|.++..++.       .|++++++++++++++|++++|+||+|.+.+   +++|+++|+++|+++|+|+++....    
T Consensus       109 ~G~~v~~vd~-------~d~~~le~~i~~~tklv~le~psnptg~v~d---l~~I~~la~~~g~~vivD~a~~~~~----  174 (378)
T TIGR01329       109 SGVVVVHVDT-------TDLDKVKAALGPKTKLVLLESPTNPLQKIVD---IRKISEMAHAQNALVVVDNTMMSPL----  174 (378)
T ss_pred             cCcEEEEeCC-------CCHHHHHHhcCcCceEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccc----
Confidence            7999888875       2789999999999999999999999999976   8999999999999999999985321    


Q ss_pred             CCccccccCCCccEEEEecCcccccc-cccceEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhcc
Q 038416          199 PYVPMGVFGSIVPVITLGSISKRWIV-PGWRLGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETN  276 (387)
Q Consensus       199 ~~~~~~~~~~~~~~~~i~s~sK~~~~-~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~  276 (387)
                      ...++ ....   .+++.|.+|.++. .+...|++++++       +++.++++..+. .+...++...+.+...+    
T Consensus       175 ~~~~l-~~g~---Di~v~S~tK~l~G~~~~~~G~v~~~~-------~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l----  239 (378)
T TIGR01329       175 LCNPL-ELGA---DIVYHSATKFLAGHSDVMAGVLAVKG-------EEIAKKVYFLQNSTGSGLAPFDCWLLLRGI----  239 (378)
T ss_pred             cCChh-hcCC---cEEEEecceeccCCccceeEEEEeCc-------HHHHHHHHHHHHhcCCcCCHHHHHHHHccC----
Confidence            12223 1222   3889999998754 347789998854       145566665544 33444554443333333    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----------------ceEEEEEecCcccccCCCcHHHHHHHHHH
Q 038416          277 EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ----------------GAMFVMVKLNVSMLEDIGDDLEFCLKLAK  340 (387)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~  340 (387)
                       ..+..+.++...++..+.+.|++.|.+..+.+|.                .|..+.+.+..     .....+++..| +
T Consensus       240 -~tl~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~-----~~~~~~~~~~L-~  312 (378)
T TIGR01329       240 -KTLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGS-----VALSKRLVEAT-K  312 (378)
T ss_pred             -CCHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECC-----HHHHHHHHHhC-c
Confidence             3377788888888888888888776543333321                23344555521     11244666665 6


Q ss_pred             hcCeEEEcCCccCC-----------------------CCeEEEEeeCChHhHHHHHHHHHHHHHHh
Q 038416          341 EESVIILPGRTVGM-----------------------KNWLRIAFAAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       341 ~~gi~v~~g~~~~~-----------------------~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      ..++.++-|+....                       ++.+|+|++.  |+.+.+++.|.+++++.
T Consensus       313 ~~~i~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl--E~~~dl~~dl~~al~~~  376 (378)
T TIGR01329       313 LFSITVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGI--EDVDDLISDLDIAFVTA  376 (378)
T ss_pred             CcccccCCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHHhc
Confidence            66777766654210                       3579999998  67888888888888753

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PLN00144 acetylornithine transaminase

Probab=99.92  E-value=9.7e-23  Score=188.32  Aligned_cols=323  Identities=14%  Similarity=0.120  Sum_probs=208.0

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc---CC------
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA---RP------   96 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~---~~------   96 (387)
                      .+|.+.+++++++....  .++. ....+....+++.+.+..    ..+.+++++++++|++.+++...   +.      
T Consensus        32 ~~p~v~~ai~~q~~~~~--~~~~-~~~~~~~~~la~~l~~~~----~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~~  104 (382)
T PLN00144         32 GDPDWVKAVAEQAGTLA--HVSN-VYHTIPQVELAKRLVASS----FADRVFFCNSGTEANEAAIKFARKYQRVRAPDKK  104 (382)
T ss_pred             CCHHHHHHHHHHHHhcC--Cccc-cccCHHHHHHHHHHHhcC----CCCeEEEeCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence            57899999999987532  1221 112344555666654422    24689999999999999998753   10      


Q ss_pred             ------CCeEEEcCCCCcchHHHhhccCCCceee---eeccCCCCC--ccCChhhHHHhhccCceEEEEeCC-CCCcccc
Q 038416           97 ------GANILIPRPGYPLYEIHAAGSNNNLEAR---HYDLLPEKR--WEVDLDGVEALADENTVAIVIINP-GNPCGNV  164 (387)
Q Consensus        97 ------g~~vl~~~p~~~~~~~~~~~~~~g~~~~---~~~~~~~~~--~~~~~~~l~~~~~~~~~~v~l~~p-~nptG~~  164 (387)
                            ..+|+....+|++....+. +..+....   ..+..+..-  ..-|++.+++.+.++....++..| +||+|+.
T Consensus       105 ~~~~~~r~~ii~~~~~yHG~t~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi~eP~q~~gg~~  183 (382)
T PLN00144        105 DPAASSATEFVSFSNSFHGRTLGAL-ALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKLIQKGKTAAVFVEPVQGEGGIY  183 (382)
T ss_pred             cccccccceEEEECCCcccccHHHH-hcCCCccccccCCCCCCCeEEeCCCCHHHHHHhcCCCCeEEEEEccccCCCCCc
Confidence                  2578999999988654444 01221100   011111000  011688888888654444444555 7886654


Q ss_pred             C-CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCCccEEEEecCcccccccccceEEEEeeCCCCccc
Q 038416          165 F-SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQ  242 (387)
Q Consensus       165 ~-~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~  242 (387)
                      . +.+.+++|.++|++||+++|+||++.++...+..+.. ...+.++     +.+++|.+ .+|+|+|++++++      
T Consensus       184 ~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PD-----i~t~sK~l-~~G~pig~v~~~~------  251 (382)
T PLN00144        184 PATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPD-----IMTLAKPL-AGGLPIGAVLVTE------  251 (382)
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCC-----EEEecccc-cCCcceEEEEEcH------
Confidence            3 4555999999999999999999999998776653321 3344443     67899996 5789999999976      


Q ss_pred             chhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHHH-HHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEec
Q 038416          243 NSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGL-LKETADICYERIKEIPCITCPVKPQGAMFVMVKL  320 (387)
Q Consensus       243 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~  320 (387)
                        ++.+.+.... ..++..+++.++++.+.|+...+..+.+..+. -...++.+.+.+++.|.+..+  ...|.++|+.+
T Consensus       252 --~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~v--rg~G~~~~l~l  327 (382)
T PLN00144        252 --KVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLRELLRRKLGGNPHVKEV--RGVGLLVGIQL  327 (382)
T ss_pred             --HHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhCCCceee--ecCceEEEEEe
Confidence              6777665332 34667888888888866654333223222222 222344444555555544323  23789999988


Q ss_pred             CcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHh
Q 038416          321 NVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       321 ~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                      ..       +...+...+ .++||.+.|+..   .+.+|++++  .+++++++++++|.++++++
T Consensus       328 ~~-------~~~~~~~~~-~~~Gv~i~~~~~---~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~~  381 (382)
T PLN00144        328 DV-------PAGPLVDAC-RDSGLLVLTAGK---GDVVRLVPPLVISEAELEQAVEILADCLPAL  381 (382)
T ss_pred             cC-------ccHHHHHHH-HHCCeEEeecCC---CCEEEEeCCCccCHHHHHHHHHHHHHHHHhc
Confidence            42       234555554 677999998732   489999994  57899999999999998764

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.92  E-value=2e-22  Score=188.31  Aligned_cols=159  Identities=23%  Similarity=0.190  Sum_probs=130.8

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcch----HHHhhccCCCceeee
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLY----EIHAAGSNNNLEARH  125 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~----~~~~~~~~~g~~~~~  125 (387)
                      ....+|++.++++++        .+..+++++++.|+..++.+++++||+|+++.+.|++.    ...+.  ..|.++..
T Consensus        57 p~~~~le~~lA~l~g--------~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~--~~G~~v~~  126 (418)
T TIGR01326        57 PTTDVLEQRIAALEG--------GVAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLK--RLGIEVRF  126 (418)
T ss_pred             hhHHHHHHHHHHHhC--------CCeEEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHH--HcCcEEEE
Confidence            456889999999882        35788999999999999999999999999999999754    34456  68888888


Q ss_pred             eccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccc
Q 038416          126 YDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV  205 (387)
Q Consensus       126 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~  205 (387)
                      ++..       |++++++++++++++|++++|+||+|.+.+   +++|.++|+++|+++|+|++|+...    ...++  
T Consensus       127 v~~~-------d~~~l~~~l~~~t~~V~le~p~NPtg~v~d---l~~I~~la~~~~i~livD~t~~~~~----~~~~l--  190 (418)
T TIGR01326       127 VDPD-------DPEEFEKAIDENTKAVFAETIGNPAINVPD---IEAIAEVAHAHGVPLIVDNTFATPY----LCRPI--  190 (418)
T ss_pred             ECCC-------CHHHHHHhcCcCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCchhh----cCCch--
Confidence            7641       789999999889999999999999999976   7888999999999999999997421    11121  


Q ss_pred             cCCCccEEEEecCcccccccccceEEEEeeC
Q 038416          206 FGSIVPVITLGSISKRWIVPGWRLGWLVTSD  236 (387)
Q Consensus       206 ~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~  236 (387)
                        ..+..+++.|++|.++.+|.|+|+++++.
T Consensus       191 --~~g~Divv~S~sK~l~g~G~~lGg~v~~~  219 (418)
T TIGR01326       191 --DHGADIVVHSATKYIGGHGTAIGGVIVDG  219 (418)
T ss_pred             --hcCCeEEEECccccccCCccceEEEEEec
Confidence              11346999999999999999999999864

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.92  E-value=2.4e-22  Score=187.27  Aligned_cols=297  Identities=18%  Similarity=0.169  Sum_probs=196.6

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhh--ccCCCceeeeec
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAA--GSNNNLEARHYD  127 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~--~~~~g~~~~~~~  127 (387)
                      ....+|++.++++.+        .+..++++++++|+..++.+++++||+|+++.+.|++....+.  ....|.++..++
T Consensus        58 pt~~~Le~~lA~l~g--------~~~~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d  129 (425)
T PRK06084         58 PTNDVLEQRVAALEG--------GVGALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAA  129 (425)
T ss_pred             chHHHHHHHHHHHhC--------CCceeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEEC
Confidence            456789999999872        3467788888999999999999999999999999986554443  012455655554


Q ss_pred             cCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccC
Q 038416          128 LLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFG  207 (387)
Q Consensus       128 ~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~  207 (387)
                      .       .|++++++++++++++|++++|+||+|.+++   +++|.++|+++|+++|+|++|+....    ..++ ...
T Consensus       130 ~-------~d~e~le~ai~~~tklV~lesp~NPtG~v~d---l~~I~~la~~~~i~vVvD~a~a~~~~----~~p~-~~g  194 (425)
T PRK06084        130 H-------DDIAALEALIDERTKAVFCESIGNPAGNIID---IQALADAAHRHGVPLIVDNTVATPVL----CRPF-EHG  194 (425)
T ss_pred             C-------CCHHHHHHHhccCCcEEEEeCCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc----CChh-hcC
Confidence            2       3889999999989999999999999999987   78889999999999999999984221    1122 122


Q ss_pred             CCccEEEEecCcccccccccceEEEEeeCCCC-ccc-----------ch--------------hHHHHHH-h-hhhccCC
Q 038416          208 SIVPVITLGSISKRWIVPGWRLGWLVTSDPNG-ILQ-----------NS--------------GFVDSIK-G-CLNAASH  259 (387)
Q Consensus       208 ~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~-~~~-----------~~--------------~~~~~~~-~-~~~~~~~  259 (387)
                      .   .+++.|++|.++.+|.++|.+++.+... ...           +|              ......+ . ....+..
T Consensus       195 a---Divv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~  271 (425)
T PRK06084        195 A---DIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAA  271 (425)
T ss_pred             C---CEEEECchhcccccccceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHHHHHhcCCC
Confidence            2   3899999999998898889887753210 000           00              0000001 0 1123455


Q ss_pred             cchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC----------------C-ceEEEEEecCc
Q 038416          260 PVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKP----------------Q-GAMFVMVKLNV  322 (387)
Q Consensus       260 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------------~-~g~~~~~~~~~  322 (387)
                      .+++..+.+..-|+.     +..+.++..+++..+.+.|++.|.+..+.+|                . .|.++.+.+..
T Consensus       272 l~~~~a~l~lrgl~t-----l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~~gg~~s~~~~~  346 (425)
T PRK06084        272 LSPFNAFLILQGLET-----LALRMERHTENALKVARYLQQHPQVAWVKYAGLPDHPEHELARRYMGGKPASILSFGIKG  346 (425)
T ss_pred             CCHHHHHHHHcCcCc-----HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCcccHHHHHHhCCCCcceEEEEEecC
Confidence            566655555444444     7888889999999999999998876645444                1 24455555532


Q ss_pred             ccccCCCcHHHHHHHHHHhcCeEEEcCCccC----------------------C-CCeEEEEeeCChHhHHHHHHHHHHH
Q 038416          323 SMLEDIGDDLEFCLKLAKEESVIILPGRTVG----------------------M-KNWLRIAFAAEPATLEDGLERIKAF  379 (387)
Q Consensus       323 ~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~----------------------~-~~~~Ri~~~~~~e~~~~~~~~l~~~  379 (387)
                      .    ......+++.| +=..+.++-|+...                      . ++.+|+|++.  |+.+.+++.|.++
T Consensus       347 ~----~~~~~~f~~~l-~l~~~~~slG~~~slv~~p~~~~h~~~~~~~~~~~gi~~~liR~svGl--Ed~~dLi~dl~~A  419 (425)
T PRK06084        347 G----QAAGARFIDAL-KLVVRLVNIGDAKSLACHPASTTHRQLNDEELEKAGVSRDMVRLSIGI--EHIDDIIADLAQA  419 (425)
T ss_pred             C----HHHHHHHHHhC-CcceeccccCCCceeeeCCCcCCcccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHH
Confidence            1    00122343333 21121111111110                      0 3579999999  6788888888888


Q ss_pred             HHHhh
Q 038416          380 CQRHA  384 (387)
Q Consensus       380 ~~~~~  384 (387)
                      +...+
T Consensus       420 l~~~~  424 (425)
T PRK06084        420 LDASK  424 (425)
T ss_pred             HHhhh
Confidence            87654

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.92  E-value=1.7e-22  Score=185.58  Aligned_cols=291  Identities=15%  Similarity=0.134  Sum_probs=198.0

Q ss_pred             CCCC--CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHH----hhccC
Q 038416           45 CYSP--TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIH----AAGSN  118 (387)
Q Consensus        45 ~y~~--~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~----~~~~~  118 (387)
                      .|+.  .+....|++.+|++.        ..+++++++|+++|+..++.+++++||+|++++|.|+++...    ..  .
T Consensus        43 ~Y~r~gnPt~~~lE~~lA~l~--------g~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~--~  112 (377)
T TIGR01324        43 TYGRRGTLTHFALQDAMCELE--------GGAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLK--R  112 (377)
T ss_pred             cccCCCCccHHHHHHHHHHHh--------CCCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHH--h
Confidence            4554  234479999999988        346899999999999999999999999999999999876543    34  5


Q ss_pred             CCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCC
Q 038416          119 NNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGST  198 (387)
Q Consensus       119 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~  198 (387)
                      .|+++..++.  .     +.+.+++++++++++|++.+|+||+|..   .++++|+++|+++|+++|+|++|+....   
T Consensus       113 ~gi~v~~~d~--~-----~~e~l~~~i~~~tklV~lesp~Np~g~~---~dl~~I~~la~~~g~~livD~t~a~g~~---  179 (377)
T TIGR01324       113 MGVDITYYDP--L-----IGEDIATLIQPNTKVLFLEAPSSITFEI---QDIPAIAKAARNPGIVIMIDNTWAAGLL---  179 (377)
T ss_pred             cCcEEEEECC--C-----CHHHHHHhcCCCceEEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCCccccc---
Confidence            6777766642  1     2378899999999999999999999888   5699999999999999999999985321   


Q ss_pred             CCccccccCCCccEEEEecCccccccc-ccceEEEEeeCCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhcc
Q 038416          199 PYVPMGVFGSIVPVITLGSISKRWIVP-GWRLGWLVTSDPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETN  276 (387)
Q Consensus       199 ~~~~~~~~~~~~~~~~i~s~sK~~~~~-g~r~G~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~  276 (387)
                       ..++ .+   +..++++|++|.++.+ +.-.|+++.++        +.++.++... ..+...++...+.+...++   
T Consensus       180 -~~pl-~~---gaDivv~S~tK~l~G~~d~~gG~v~~~~--------~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~---  243 (377)
T TIGR01324       180 -FKPL-EH---GVDISIQAGTKYLVGHSDIMIGTVVANA--------RTWDQLREHSYLMGQMVDADDAYTTLRGLR---  243 (377)
T ss_pred             -cCcc-cc---CceEEEecCceeccCCCCceEEEEEeCH--------HHHHHHHHHHHHhCCCCCHHHHHHHHhhhh---
Confidence             1122 12   2348999999998643 46778887754        4555555432 2344555654444444343   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----------------ceEEEEEecCcccccCCCcHHHHHHHHHH
Q 038416          277 EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ----------------GAMFVMVKLNVSMLEDIGDDLEFCLKLAK  340 (387)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~  340 (387)
                        .+.-+.++..+++..+.+.|++.|.+..+.+|.                .|.++.+.+....   ......+++.+ +
T Consensus       244 --tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~---~~~~~~~~~~l-~  317 (377)
T TIGR01324       244 --TLGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLT---QKQVHAFLDHL-Q  317 (377)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCC---HHHHHHHHHhC-C
Confidence              366678888888888889998877665454442                2344555553200   01223444443 3


Q ss_pred             hcCeEEEcCCccC-------------------CCCeEEEEeeCChHhHHHHHHHHHHHHHH
Q 038416          341 EESVIILPGRTVG-------------------MKNWLRIAFAAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       341 ~~gi~v~~g~~~~-------------------~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~  382 (387)
                      -.++.++-|+...                   .++.+|+|++.  |+.+.+++.|.++++.
T Consensus       318 ~~~~~~slG~~~sl~~~~~~~~~~~~~~~~~~~~~liR~svGl--E~~~dl~~dl~~al~~  376 (377)
T TIGR01324       318 LFGLGYSWGGYESLALCNQPELGHRPNIKRNLEGPLIRVHIGL--ENVDDLKADLKAGFEA  376 (377)
T ss_pred             cceEeccCCCccceeecCCCCCCHHHHHhccCCCCEEEEEeCC--CCHHHHHHHHHHHHhc
Confidence            3333332222100                   12579999998  5677778888777753

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.92  E-value=3.6e-22  Score=184.92  Aligned_cols=283  Identities=16%  Similarity=0.135  Sum_probs=189.4

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchH----HHhhccCCCceeee
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYE----IHAAGSNNNLEARH  125 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~----~~~~~~~~g~~~~~  125 (387)
                      ....+|++.++++++      .+ .. +++++|+.++..++. ++++||+|+++.|.|++..    ..+.  ..|.++..
T Consensus        54 p~~~~le~~lA~l~g------~~-~~-v~~~sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~--~~G~~v~~  122 (390)
T PRK08064         54 PTREALEDIIAELEG------GT-KG-FAFASGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLS--RFGIEHTF  122 (390)
T ss_pred             hhHHHHHHHHHHHhC------CC-Ce-EEECCHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHH--HcCCEEEE
Confidence            456788999999883      23 34 455666778988886 6789999999999998533    4455  68999888


Q ss_pred             eccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccc
Q 038416          126 YDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV  205 (387)
Q Consensus       126 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~  205 (387)
                      ++..       |++++++++++++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|......    .++ .
T Consensus       123 v~~~-------d~~~l~~~l~~~tklV~l~~p~NptG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~----~~~-~  187 (390)
T PRK08064        123 VDMT-------NLEEVAQNIKPNTKLFYVETPSNPLLKVTD---IRGVVKLAKAIGCLTFVDNTFLTPLLQ----KPL-D  187 (390)
T ss_pred             ECCC-------CHHHHHHhcCCCceEEEEECCCCCCcEecc---HHHHHHHHHHcCCEEEEECCCCccccc----Cch-h
Confidence            8752       689999999889999999999999999976   788888899999999999998753211    122 2


Q ss_pred             cCCCccEEEEecCccccc-ccccceEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHH
Q 038416          206 FGSIVPVITLGSISKRWI-VPGWRLGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKI  283 (387)
Q Consensus       206 ~~~~~~~~~i~s~sK~~~-~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~  283 (387)
                      +.   ..+++.|++|.++ .+|.-.|++++++       ++++++++.... .+...++...+.+..-+     ..+..+
T Consensus       188 ~g---~Divv~S~tK~~~G~~~~laG~~v~~~-------~~~~~~l~~~~~~~g~~~~~~~a~l~~~gl-----~tl~~R  252 (390)
T PRK08064        188 LG---ADVVLHSATKFLAGHSDVLAGLAVVKD-------EELAQKLYFLQNSFGAVLGVQDCWLVLRGL-----KTLHVR  252 (390)
T ss_pred             hC---CcEEEeecceeccCCccceeEEEEeCC-------HHHHHHHHHHHHhcCCCCCHHHHHHHHccc-----CcHHHH
Confidence            22   2488999999975 3445568777653       257777776654 23333333333322222     336778


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCC----------------ceEEEEEecCcccccCCCcHHHHHHHHHHhcCe---
Q 038416          284 IGLLKETADICYERIKEIPCITCPVKPQ----------------GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESV---  344 (387)
Q Consensus       284 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi---  344 (387)
                      .++..+++..+.+.|++.|.+..+.+|.                .|..+.+.+.        + .+.+..++.+.++   
T Consensus       253 ~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~--------~-~~~~~~f~~~l~l~~~  323 (390)
T PRK08064        253 LEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQ--------S-EEAVRQFVSHVKLPVF  323 (390)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEEC--------C-HHHHHHHHHhCCcceE
Confidence            8888888888888888876544333331                2334454553        1 2233445555565   


Q ss_pred             EEEcCC------------ccC----------C-CCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          345 IILPGR------------TVG----------M-KNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       345 ~v~~g~------------~~~----------~-~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      .++-|.            ++.          . ++.+|+|++.  |+.+.+++.|.+++++.+
T Consensus       324 ~~s~G~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGl--e~~~dli~dl~~Al~~~~  384 (390)
T PRK08064        324 AVSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGL--ENVDDLIADFEQALSYVE  384 (390)
T ss_pred             cccCCCCcceeECCcccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHHhcc
Confidence            333331            111          1 3579999998  466666777777776654

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.92  E-value=6.3e-22  Score=181.26  Aligned_cols=283  Identities=14%  Similarity=0.105  Sum_probs=188.8

Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHH----HhhccCCCceeeeeccC
Q 038416           54 SARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEI----HAAGSNNNLEARHYDLL  129 (387)
Q Consensus        54 ~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~----~~~~~~~g~~~~~~~~~  129 (387)
                      .|++.++.+.        ..+..++++++++|+..++.+++++||+|+++.|.|+++..    .++  ..|.++..++..
T Consensus        68 ~Le~~la~le--------~~~~~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~--~~Gi~v~~vd~~  137 (395)
T PRK05967         68 ALCKAIDALE--------GSAGTILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLK--RLGVEVEYYDPE  137 (395)
T ss_pred             HHHHHHHHHh--------CCCCEEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHH--hcCeEEEEeCCC
Confidence            4566665543        12345566668999999999999999999999999998765    346  788888877531


Q ss_pred             CCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCC
Q 038416          130 PEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSI  209 (387)
Q Consensus       130 ~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~  209 (387)
                             +.+.++++++++|++|++.+|+||++..   .++++|+++|+++|+++|+|++|+...+    ..++. +.. 
T Consensus       138 -------~~e~l~~al~~~TklV~lesPsNP~l~v---~dl~~I~~la~~~g~~vvVD~t~a~p~~----~~pl~-~Ga-  201 (395)
T PRK05967        138 -------IGAGIAKLMRPNTKVVHTEAPGSNTFEM---QDIPAIAEAAHRHGAIVMMDNTWATPLY----FRPLD-FGV-  201 (395)
T ss_pred             -------CHHHHHHhcCcCceEEEEECCCCCCCcH---HHHHHHHHHHHHhCCEEEEECCccCcee----cChhH-cCC-
Confidence                   3477999999999999999999998765   7799999999999999999999985321    12221 223 


Q ss_pred             ccEEEEecCcccccc-cccceEEEEeeCCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHH
Q 038416          210 VPVITLGSISKRWIV-PGWRLGWLVTSDPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLL  287 (387)
Q Consensus       210 ~~~~~i~s~sK~~~~-~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  287 (387)
                        .+++.|.+|.++. ++.-.|+++.++        +.++++.... ..+...+++..+.+..-++.     +.-+.++.
T Consensus       202 --Divv~S~tKy~~Gh~d~~~G~v~~~~--------~~~~~l~~~~~~~G~~~~p~da~l~~rgl~T-----l~lR~~~~  266 (395)
T PRK05967        202 --DISIHAATKYPSGHSDILLGTVSANE--------KCWPQLLEAHGTLGLCAGPDDTYQILRGLRT-----MGIRLEHH  266 (395)
T ss_pred             --CEEEEecccccCCCCCeeEEEEEcCH--------HHHHHHHHHHHHcCCCCCHHHHHHHHcCccc-----HHHHHHHH
Confidence              3999999999643 446677666543        4555555333 24556666665544444443     77788888


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCC----------------ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeE---EEc
Q 038416          288 KETADICYERIKEIPCITCPVKPQ----------------GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVI---ILP  348 (387)
Q Consensus       288 ~~~~~~~~~~l~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~---v~~  348 (387)
                      .+++..+.+.|++.|.+..+.+|.                .|..+.+.+....    .++.+.+.+++.+-.+.   +.-
T Consensus       267 ~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~----~~~~~~~~~f~~~l~l~~~~~sl  342 (395)
T PRK05967        267 RKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGP----EKGKAKAHAFLDALEIFGLGYSW  342 (395)
T ss_pred             HHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCC----cccHHHHHHHHHhCCcceEccCC
Confidence            999999999999988776555553                2345555564210    00122223333322221   111


Q ss_pred             CCcc----------------C-CCCeEEEEeeCChHhHHHHHHHHHHHHHHh
Q 038416          349 GRTV----------------G-MKNWLRIAFAAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       349 g~~~----------------~-~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      |+..                + .++.+|||++.  |+.+.+++.|.++++..
T Consensus       343 G~~~sLi~~~~~~~~~~~~~~~~~~liRlSvGl--Ed~~dLi~Dl~~Al~~~  392 (395)
T PRK05967        343 GGYESLALHVKLGDRTVAKAPYAGPVIRLQIGL--EDVPDLKADLERGFAAA  392 (395)
T ss_pred             CCcceeeeeCCCChhHhhhccCCCCeEEEEecc--CCHHHHHHHHHHHHHhh
Confidence            1111                0 02479999998  56777788888877654

>PRK05939 hypothetical protein; Provisional

Probab=99.92  E-value=7.5e-22  Score=182.52  Aligned_cols=288  Identities=15%  Similarity=0.095  Sum_probs=193.7

Q ss_pred             CcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchH---HHhhccCCCceeeeec
Q 038416           51 GVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYE---IHAAGSNNNLEARHYD  127 (387)
Q Consensus        51 ~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~---~~~~~~~~g~~~~~~~  127 (387)
                      ....|++.++++.+        .+..+++++++.|+..++.+++++||+|+++.+.|+++.   ..+.  ..|+++..++
T Consensus        48 ~~~~lE~~la~leg--------~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~--~~G~~v~~v~  117 (397)
T PRK05939         48 TTAALEAKITKMEG--------GVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLR--GLGVEVTMVD  117 (397)
T ss_pred             HHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHH--hcCCEEEEEC
Confidence            34589999999872        344566666799999999999999999999999997643   3455  6898888886


Q ss_pred             cCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccC
Q 038416          128 LLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFG  207 (387)
Q Consensus       128 ~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~  207 (387)
                      .       .|++++++++++++++|++++|+||||.+   .++++|+++|+++|+++|+|++++...    ...+. .+ 
T Consensus       118 ~-------~d~e~l~~~l~~~tklV~vesp~NptG~v---~dl~~I~~la~~~gi~livD~t~a~~~----~~~~~-~~-  181 (397)
T PRK05939        118 A-------TDVQNVAAAIRPNTRMVFVETIANPGTQV---ADLAGIGALCRERGLLYVVDNTMTSPW----LFRPK-DV-  181 (397)
T ss_pred             C-------CCHHHHHHhCCCCCeEEEEECCCCCCCCH---HhHHHHHHHHHHcCCEEEEECCccccc----ccCcc-cc-
Confidence            5       27899999999999999999999999998   559999999999999999999986421    11111 11 


Q ss_pred             CCccEEEEecCcccccccccceEEEEeeCCCC-cccc-------------hhHHHHHHhh--hhccCCcchHHHHHHHHH
Q 038416          208 SIVPVITLGSISKRWIVPGWRLGWLVTSDPNG-ILQN-------------SGFVDSIKGC--LNAASHPVTFIQAAVPRI  271 (387)
Q Consensus       208 ~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~-~~~~-------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  271 (387)
                        +..+++.|++|.++..|.++|+++..+... ..+.             ...+..++..  .......++...+.+..-
T Consensus       182 --gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rg  259 (397)
T PRK05939        182 --GASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGATLSSEAAHRIAIG  259 (397)
T ss_pred             --CCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhcCCCCCHHHHHHHHcC
Confidence              345899999999999999999988753210 0000             0001122221  123445555555544444


Q ss_pred             hhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----------------ceEEEEEecCcccccCCCcHHHHH
Q 038416          272 VDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ----------------GAMFVMVKLNVSMLEDIGDDLEFC  335 (387)
Q Consensus       272 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~  335 (387)
                      ++.     +.-+.++..+++..+.+.|++.|.+..+.+|.                .|.++.+.+...     .+...++
T Consensus       260 l~t-----l~~R~~~~~~na~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~g~g~l~sf~~~~~-----~~~~~f~  329 (397)
T PRK05939        260 AET-----LALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARATELFRHYGGLLSFELADG-----IDCFDFL  329 (397)
T ss_pred             cCc-----HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCchHHHHHHhccCCceEEEEEeCCH-----HHHHHHH
Confidence            443     67778888889999999999887665454543                344555555421     0122333


Q ss_pred             HHHHHhcCeE---EEcCCcc----------------------CC-CCeEEEEeeCChHhHHHHHHHHHHHHHH
Q 038416          336 LKLAKEESVI---ILPGRTV----------------------GM-KNWLRIAFAAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       336 ~~ll~~~gi~---v~~g~~~----------------------~~-~~~~Ri~~~~~~e~~~~~~~~l~~~~~~  382 (387)
                      ..+    .+.   ..-|+..                      +. ++.+|+|++.  |+.+.+++.|.+++++
T Consensus       330 ~~l----~l~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~lvR~svGl--Ed~~dLi~dl~~Al~~  396 (397)
T PRK05939        330 NRL----KLVIKATHLGDTRTLVIPVAPTIYYEMGAERRASMGIADSLIRVSVGI--EDEADLIADFEQALDA  396 (397)
T ss_pred             HhC----CcceEccCCCCCCeeeecCcccccccCCHHHHHhcCCCCCeEEEEeCC--CCHHHHHHHHHHHHhc
Confidence            332    221   1111110                      00 2579999999  5788888888888764

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.92  E-value=4.6e-22  Score=186.46  Aligned_cols=349  Identities=16%  Similarity=0.094  Sum_probs=207.4

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      .+++..-|.-....++ .+|.+.+|+++++.......+..  ...+.+..+++.+.+..+ ....+.+++++++++|++.
T Consensus        34 ~ylD~~~g~~~~~lGh-~~p~v~~a~~~ql~~~~~~~~~~--~~~~~~~~la~~l~~~~p-~~~~~~v~f~~sGseA~e~  109 (420)
T TIGR00700        34 RLIDFASGIAVLNIGH-SHPRVVDAVRTQVAEFTHTCFMV--TPYEGYVALAEKLNRIAP-GSGPKKSVFFNSGAEAVEN  109 (420)
T ss_pred             EEEECccCHHhccCCC-CCHHHHHHHHHHHHhccCccccc--cCChHHHHHHHHHHHhCC-CCCCCEEEEeCCcHHHHHH
Confidence            4555544432222223 47889999999987642212211  112333444444443221 1123689999999999999


Q ss_pred             HHHhhc--CCCCeEEEcCCCCcchHHHhhccCC-C--------c-----eeeeeccCCCCC---------ccCChhhHHH
Q 038416           89 SLSVLA--RPGANILIPRPGYPLYEIHAAGSNN-N--------L-----EARHYDLLPEKR---------WEVDLDGVEA  143 (387)
Q Consensus        89 ~~~~l~--~~g~~vl~~~p~~~~~~~~~~~~~~-g--------~-----~~~~~~~~~~~~---------~~~~~~~l~~  143 (387)
                      +++...  ....+|+....+|++....+.  .. +        .     ++..++.+....         +.-+++.+++
T Consensus       110 AlklAr~~tgr~~ii~~~~~yHG~t~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (420)
T TIGR00700       110 AVKIARSYTGRPGVVAFDHGFHGRTNMTM--ALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARA  187 (420)
T ss_pred             HHHHHHHhcCCCcEEEECCCcCCCcHHHH--HhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHH
Confidence            998753  223678888999988654433  11 1        1     112222210000         0002445666


Q ss_pred             hhc----cCceEEEEeCC-CCCccccCC-HHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEec
Q 038416          144 LAD----ENTVAIVIINP-GNPCGNVFS-YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGS  217 (387)
Q Consensus       144 ~~~----~~~~~v~l~~p-~nptG~~~~-~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s  217 (387)
                      .+.    ++..+.++..| +..+|..++ .+.+++|.++|++||+++|+||+|.++.+.+.. ..+..+..   ...+.+
T Consensus       188 ~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~-~a~~~~~~---~pDi~~  263 (420)
T TIGR00700       188 IFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAM-FACEHEGP---EPDLIT  263 (420)
T ss_pred             HHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchh-HHHhhcCC---CCCEEE
Confidence            542    23445556666 667888665 445999999999999999999999998776642 22222221   122456


Q ss_pred             CcccccccccceEEEEeeCCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHH-HHHHHHHHHHH
Q 038416          218 ISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKII-GLLKETADICY  295 (387)
Q Consensus       218 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~  295 (387)
                      +||.++ +|+|+||+++++        ++.+.+.... ..+++.++++++++.+.++...+..+.++. +.-.+.++.+.
T Consensus       264 lsK~l~-~G~pig~v~~~~--------~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~L~  334 (420)
T TIGR00700       264 TAKSLA-DGLPLSGVTGRA--------EIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLVTDRLT  334 (420)
T ss_pred             eecccc-CCcceEEEEecH--------HHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            999986 899999999976        6777665332 356778899999887777643333333322 33333334443


Q ss_pred             HHhhcCCCCCCCCCCCceEEEEEecCccc--ccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHH
Q 038416          296 ERIKEIPCITCPVKPQGAMFVMVKLNVSM--LEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLED  371 (387)
Q Consensus       296 ~~l~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~  371 (387)
                      +..+.+|.+..+ .+. |.++++.+....  .+.......+... +.++||.+.|+..|+  +++|++++  .+++++++
T Consensus       335 ~l~~~~~~~~~v-rg~-G~~~~i~~~~~~~~~~~~~~~~~l~~~-~~~~Gv~i~p~~~f~--~~lRl~p~l~~~~~~l~~  409 (420)
T TIGR00700       335 TLKAVDPRIGDV-RGL-GAMIAVELVDPGTTEPDAGLAERIATA-AHAAGLLLLTCGMFG--NIIRFLPPLTIGDELLSE  409 (420)
T ss_pred             HHHhhCCCEEEe-ecc-ceEEEEEEecCCCCCccHHHHHHHHHH-HHHCCeEEeccCCCC--CEEEEECCCCcCHHHHHH
Confidence            333445544433 333 778888763210  0000011233333 367799999987653  78999984  58999999


Q ss_pred             HHHHHHHHHH
Q 038416          372 GLERIKAFCQ  381 (387)
Q Consensus       372 ~~~~l~~~~~  381 (387)
                      ++++|.++++
T Consensus       410 ~~~~l~~~l~  419 (420)
T TIGR00700       410 GLDILCAILA  419 (420)
T ss_pred             HHHHHHHHhh
Confidence            9999998874

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK07505 hypothetical protein; Provisional

Probab=99.91  E-value=1.5e-21  Score=182.69  Aligned_cols=316  Identities=14%  Similarity=0.135  Sum_probs=192.2

Q ss_pred             CCCCcHHHHHHHHHHhcCCC-CCCCCC-----CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc--
Q 038416           23 LLSDSTVAEDAVVDALRTAH-YNCYSP-----TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA--   94 (387)
Q Consensus        23 ~~~~~~~v~~a~~~~~~~~~-~~~y~~-----~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--   94 (387)
                      .+-.+|.+.+++++++..-. ......     .....++++.+++++      +.   +.++++++++|+..++..+.  
T Consensus        58 gl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~------~~---~~~~~~sG~~a~~~ai~~~~~~  128 (402)
T PRK07505         58 GLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELF------GA---SVLTFTSCSAAHLGILPLLASG  128 (402)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHh------CC---CEEEECChHHHHHHHHHHHHhc
Confidence            44678999999999987411 111111     123455666666665      22   45545556678887776543  


Q ss_pred             --CCC-CeEEEcCCCCcchHH---HhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           95 --RPG-ANILIPRPGYPLYEI---HAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        95 --~~g-~~vl~~~p~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                        .+| ..|++.+..|++...   ...  ..+.+++.+|.       .|++.++++++++++++++++|+||+|.+++  
T Consensus       129 ~~~~~~~~vi~~~~~~H~s~~~~~~~~--~~~~~v~~~~~-------~d~~~l~~~~~~~~~~~vl~~p~~~~G~~~~--  197 (402)
T PRK07505        129 HLTGGVPPHMVFDKNAHASLNILKGIC--ADETEVETIDH-------NDLDALEDICKTNKTVAYVADGVYSMGGIAP--  197 (402)
T ss_pred             ccCCCCCCEEEEchhhhHhHHhhhhhh--hcCCeEEEeCC-------CCHHHHHHHHhcCCCEEEEEecccccCCcCC--
Confidence              223 246666655554321   112  23456666654       2789999988778899999999999999988  


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccC--CCCCccccccC--CCccEEEEecCcccccccccceEEEEeeCCCCcccch
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFG--STPYVPMGVFG--SIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNS  244 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~--~~~~~~~~~~~--~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~  244 (387)
                       +++|.++|+++++++|+||+|+...++  +.... ...+.  ..+++++++|+||.|+.+|   ||+++++       +
T Consensus       198 -~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~-~~~~~~~~~d~~i~~~s~sK~~~~~G---g~~~~~~-------~  265 (402)
T PRK07505        198 -VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYV-RSELDYRLNERTIIAASLGKAFGASG---GVIMLGD-------A  265 (402)
T ss_pred             -HHHHHHHHHHcCCEEEEECcccccCcCCCCCchH-HHHcCCCCCCCeEEEEechhhhhccC---eEEEeCC-------H
Confidence             688888899999999999998643332  22211 11122  2356889999999998776   8877543       2


Q ss_pred             hHHHHHHhhhh---ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecC
Q 038416          245 GFVDSIKGCLN---AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLN  321 (387)
Q Consensus       245 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~  321 (387)
                      ++.+.+.....   ++.+++++++.++.+.++...++++.+..+.++++.+.+...+...     . .....++.++.++
T Consensus       266 ~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~-~g~~~~i~~~~~~  339 (402)
T PRK07505        266 EQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALFDSLIPTE-----Q-SGSFLPIRLIYIG  339 (402)
T ss_pred             HHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHhc-----C-CCCCCCEEEEEeC
Confidence            57777765432   2224455677776666653223344445555555554433222111     1 1111111222222


Q ss_pred             cccccCCCcHHHHHHHHHHhcCeEEEcCCccCC---CCeEEEEee--CChHhHHHHHHHHHHHHHH
Q 038416          322 VSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM---KNWLRIAFA--AEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       322 ~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~  382 (387)
                      ..     ....++...++ ++||.+.+...+..   .+++|+++.  .++++++++++.|++++++
T Consensus       340 ~~-----~~~~~~~~~l~-~~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l~~  399 (402)
T PRK07505        340 DE-----DTAIKAAKQLL-DRGFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLLKEILDE  399 (402)
T ss_pred             CH-----HHHHHHHHHHH-HCCCeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence            10     02345666664 66999998743322   268999996  6899999999999998865

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.91  E-value=1.5e-21  Score=184.29  Aligned_cols=354  Identities=15%  Similarity=0.113  Sum_probs=207.6

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      .+++..-|.-....++ .+|.+.+++++++.....  .+......+.+..+++.+....+.+ ..+.++++++|++|++.
T Consensus        55 ~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~--~~~~~~~~~~~~~la~~L~~~~p~~-~~~~v~f~~sGseA~e~  130 (451)
T PRK06918         55 QYIDFAGAIGTINVGH-SHPKVKEALHKQVDQYIH--TGFNVMMYEPYIELAEKLAALAPGS-FDKKVLFLNSGAEAVEN  130 (451)
T ss_pred             EEEEcCCchhhcCCCC-CCHHHHHHHHHHHHhccC--ccccccccHHHHHHHHHHHHhCCCC-CCCEEEEcCCcHHHHHH
Confidence            4555544432222222 578899999999876322  1111112344555555555433211 12589999999999999


Q ss_pred             HHHhhc--CCCCeEEEcCCCCcchHHHhhccCCCc-------------eeeeeccCCC--CCccCC--------hhhHHH
Q 038416           89 SLSVLA--RPGANILIPRPGYPLYEIHAAGSNNNL-------------EARHYDLLPE--KRWEVD--------LDGVEA  143 (387)
Q Consensus        89 ~~~~l~--~~g~~vl~~~p~~~~~~~~~~~~~~g~-------------~~~~~~~~~~--~~~~~~--------~~~l~~  143 (387)
                      +++...  ....+|+....+|++....+. +..+.             .+..+|.+..  ...+..        ++.+++
T Consensus       131 AlklAr~~tgr~~ii~~~~~yHG~t~~~l-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (451)
T PRK06918        131 AVKIARKYTKRQGIISFSRGFHGRTLMTM-TMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKN  209 (451)
T ss_pred             HHHHHHHHhCCCcEEEECCCcCccchhhh-hhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHH
Confidence            998754  223678889999998654443 01110             1122222110  000111        123333


Q ss_pred             hh----ccCceEEEEeCC-CCCccccC-CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEec
Q 038416          144 LA----DENTVAIVIINP-GNPCGNVF-SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGS  217 (387)
Q Consensus       144 ~~----~~~~~~v~l~~p-~nptG~~~-~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s  217 (387)
                      .+    .++..+.++..| +...|..+ +.+.+++|.++|++||+++|+||+|.++.+.+..+ ++..++..   ..+.|
T Consensus       210 ~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~-a~~~~~v~---pDi~t  285 (451)
T PRK06918        210 FFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYF-AIEHFDVV---PDLIT  285 (451)
T ss_pred             HHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCcee-hhHhcCCC---CCEEe
Confidence            32    234566677788 44457655 45559999999999999999999999987766432 33334321   12558


Q ss_pred             CcccccccccceEEEEeeCCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHH-HHHHHH
Q 038416          218 ISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKE-TADICY  295 (387)
Q Consensus       218 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~  295 (387)
                      +||.++ +|+|+||+++++        ++.+.+.... ..+++.+++.+.++.+.++...+..+.++.+.+.+ .++.+.
T Consensus       286 ~sK~l~-~G~pig~v~~~~--------~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~  356 (451)
T PRK06918        286 VSKSLG-AGVPISGVIGRK--------EIMDESAPGELGGTYAGSPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRFE  356 (451)
T ss_pred             eehhhc-CCCccEEEEEcH--------HHHhccCCCCcCcCCCcCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence            999986 899999999975        6776665332 35677889999997777765433333333322222 222332


Q ss_pred             HHhhcCCCCCCCCCCCceEEEEEecCcc--cccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHH
Q 038416          296 ERIKEIPCITCPVKPQGAMFVMVKLNVS--MLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLED  371 (387)
Q Consensus       296 ~~l~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~  371 (387)
                      +..++++.+..+ .+.++++.|......  ..++......+.. .+.++||.+.|+..|  .+++|++++  .+++++++
T Consensus       357 ~l~~~~~~~~~v-rg~G~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~Gvlv~~~~~~--~~~lrl~p~l~~t~~~id~  432 (451)
T PRK06918        357 EMKNKYNCIGDV-RGLGAMCAFELVQDRKTKEPDKTLTANICK-EANKRGLLLLSAGTY--GNVIRVLMPLVITDEQLEE  432 (451)
T ss_pred             HHHhhCCCceee-ccceeEEEEEEccCCCcCCCcHHHHHHHHH-HHHHCCeEEeecCCC--CCEEEEECCCccCHHHHHH
Confidence            222234433323 455555554433111  0111001223333 346779999997654  378999994  68999999


Q ss_pred             HHHHHHHHHHHhh
Q 038416          372 GLERIKAFCQRHA  384 (387)
Q Consensus       372 ~~~~l~~~~~~~~  384 (387)
                      ++++|.++++++.
T Consensus       433 ~l~~l~~~l~~~~  445 (451)
T PRK06918        433 GLTIIEESLQACY  445 (451)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998764

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.91  E-value=1.6e-21  Score=182.36  Aligned_cols=348  Identities=14%  Similarity=0.129  Sum_probs=210.6

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      .+++..-|.-....++ .+|.+.+++++++.......+.  ....+.+..+++.+.+..+ ....+.+++++++++|++.
T Consensus        41 ~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~~~~~~~~--~~~~~~~~~la~~l~~~~p-~~~~~~~~f~~sGseA~e~  116 (421)
T PRK09792         41 EYIDFAAGIAVLNTGH-RHPDLVAAVEQQLQQFTHTAYQ--IVPYESYVTLAEKINALAP-VSGQAKTAFFTTGAEAVEN  116 (421)
T ss_pred             EEEEccCchhhhcCCC-CCHHHHHHHHHHHHhccCcccC--ccCCHHHHHHHHHHHHhCC-CCCCceEEEeCChHHHHHH
Confidence            4555544433222222 5889999999998763221221  1123444555555544322 1123589999999999999


Q ss_pred             HHHhhc--CCCCeEEEcCCCCcchHHHhhccCCCc-------------eeeeeccCCCCCccC----ChhhHHHhhc---
Q 038416           89 SLSVLA--RPGANILIPRPGYPLYEIHAAGSNNNL-------------EARHYDLLPEKRWEV----DLDGVEALAD---  146 (387)
Q Consensus        89 ~~~~l~--~~g~~vl~~~p~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~----~~~~l~~~~~---  146 (387)
                      +++...  ....+|+....+|++...... +..+.             .+..+|.+.... .+    +++.+++.++   
T Consensus       117 AlklAr~~tgr~~ii~~~~~yHG~t~~~~-s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~-~~~~~~~~~~l~~~~~~~~  194 (421)
T PRK09792        117 AVKIARAHTGRPGVIAFSGGFHGRTYMTM-ALTGKVAPYKIGFGPFPGSVYHVPYPSDLH-GISTQDSLDAIERLFKSDI  194 (421)
T ss_pred             HHHHHHHhcCCCeEEEECCCcCCccHHHH-hhcCCCcccccCCCCCCCCcEEcCCCcccc-cccHHHHHHHHHHHHHhcc
Confidence            998864  223678999999988643332 01111             122222221111 11    2467777765   


Q ss_pred             -cCceEEEEeCC-CCCccccC-CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCccccc
Q 038416          147 -ENTVAIVIINP-GNPCGNVF-SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWI  223 (387)
Q Consensus       147 -~~~~~v~l~~p-~nptG~~~-~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~  223 (387)
                       ++..+.++..| ++++|..+ |++.+++|.++|++||+++|+||++.++.+.|.. ..+..+...   .-+.+++|.++
T Consensus       195 ~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~-~a~~~~~~~---pDi~t~gK~l~  270 (421)
T PRK09792        195 EAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKL-FAMDHYADK---PDLMTMAKSLA  270 (421)
T ss_pred             CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCch-hHHHhcCCC---CcEEEeehhhc
Confidence             23334444555 88999865 8899999999999999999999999998777653 223333221   11568999975


Q ss_pred             ccccceEEEEeeCCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHh-hcC
Q 038416          224 VPGWRLGWLVTSDPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERI-KEI  301 (387)
Q Consensus       224 ~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~  301 (387)
                       +|+|+|++++++        ++.+.+.... ..++..+++.+.++.+.++...+..+.++.+.+.++.....+.+ +.+
T Consensus       271 -~G~pigav~~~~--------~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~l~~~~  341 (421)
T PRK09792        271 -GGMPLSGVVGNA--------NIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNTLIDAKESV  341 (421)
T ss_pred             -CCCceEEEEEcH--------HHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence             789999999975        6666654332 24667888899877777665433322222223333222222333 335


Q ss_pred             CCCCCCCCCCc-eEEEEEecCccc--ccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHH
Q 038416          302 PCITCPVKPQG-AMFVMVKLNVSM--LEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERI  376 (387)
Q Consensus       302 ~~~~~~~~~~~-g~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l  376 (387)
                      |.+.   .+.+ |.++|+.++...  .+.......+...+ .++||.+.+...  .++.+|+.+.  .+++++++++++|
T Consensus       342 p~v~---~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~-~~~Gv~i~~~g~--~~~~irl~P~l~i~~~ei~~~~~~l  415 (421)
T PRK09792        342 PAIA---AVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRA-LAQGLLLLTCGA--YGNVIRFLYPLTIPDAQFDAAMKIL  415 (421)
T ss_pred             CCcc---eecccceEEEEEecCCccCCcchHHHHHHHHHH-HHCCcEEeecCC--CCCEEEEeCCCcCCHHHHHHHHHHH
Confidence            5332   4555 899999986421  00001123444544 567999864221  2578999984  6899999999999


Q ss_pred             HHHHH
Q 038416          377 KAFCQ  381 (387)
Q Consensus       377 ~~~~~  381 (387)
                      .++++
T Consensus       416 ~~~l~  420 (421)
T PRK09792        416 QDALS  420 (421)
T ss_pred             HHHHh
Confidence            99875

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.91  E-value=1.3e-21  Score=180.96  Aligned_cols=317  Identities=14%  Similarity=0.048  Sum_probs=194.4

Q ss_pred             CCCCCCCcHHHHHHHHHHhcCC-------CC--CCCC----CCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHH
Q 038416           20 GVSLLSDSTVAEDAVVDALRTA-------HY--NCYS----PTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI   86 (387)
Q Consensus        20 ~~~~~~~~~~v~~a~~~~~~~~-------~~--~~y~----~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~   86 (387)
                      .|.++..++.+.+++.+++..-       ..  .+..    ...-+.++|+.++++++      . ++.+++++| ..++
T Consensus        13 ~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~------~-~~~l~~~sG-~~a~   84 (370)
T PRK05937         13 DFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHG------A-PEAFIVPSG-YMAN   84 (370)
T ss_pred             CccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhC------C-CeEEEECCh-HHHH
Confidence            3457888888888888877542       01  1111    11236778888888883      2 233555554 5667


Q ss_pred             HHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc------cCceEEEEeCCCCC
Q 038416           87 EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD------ENTVAIVIINPGNP  160 (387)
Q Consensus        87 ~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~v~l~~p~np  160 (387)
                      ..+...+.++||.|++..-.|.+....++  ........++       ..|+++|++.++      +++.+|++++++|+
T Consensus        85 ~~~~~~~~~~~d~ii~d~~~H~sv~~~~~--~~~~~~~~~~-------~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~  155 (370)
T PRK05937         85 LGLCAHLSSVTDYVLWDEQVHISVVYSLS--VISGWHQSFR-------HNDLDHLESLLESCRQRSFGRIFIFVCSVYSF  155 (370)
T ss_pred             HHHHHHhCCCCCEEEEEhhhhHHHHHHHH--HcCCceEEec-------CCCHHHHHHHHHhhhccCCCcEEEEEecCCCC
Confidence            66666666788888888888877766666  4432333332       247888888875      24567778899999


Q ss_pred             ccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCc
Q 038416          161 CGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGI  240 (387)
Q Consensus       161 tG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~  240 (387)
                      +|.++|   +++|.++|+++|+++|+|++|+...+..........+...+..+++.|+||.+|..|  .| ++..+    
T Consensus       156 ~G~i~p---l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g~~G--~~-vl~~~----  225 (370)
T PRK05937        156 KGTLAP---LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALGSMG--AA-LLSSS----  225 (370)
T ss_pred             CCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhhcCc--eE-EEcCH----
Confidence            999988   788888999999999999999953322111111111111122356789999988777  33 34432    


Q ss_pred             ccchhHHHHHHhh---hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEE
Q 038416          241 LQNSGFVDSIKGC---LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVM  317 (387)
Q Consensus       241 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~  317 (387)
                          +..+.+...   ..+..+.+++...++.++++...+. -....+++.++++++.+.|+.. +      +.....  
T Consensus       226 ----~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~-~~~~~~~l~~l~~~l~~~l~~~-~------~~~~~~--  291 (370)
T PRK05937        226 ----EVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQE-GELARKQLFRLKEYFAQKFSSA-A------PGCVQP--  291 (370)
T ss_pred             ----HHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHhcCCC-C------CCCEEE--
Confidence                344444321   1233445666666666666543222 1334566777777777666432 1      111111  


Q ss_pred             EecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHhhh
Q 038416          318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      +.++.      .....+... +.++||.+... .+...+++|++++  ++++|++++++.|+++++++.+
T Consensus       292 i~~~~------~~~~~~~~~-L~~~gi~v~~~-~~~~~~~iRis~~~~~t~edid~l~~~L~~~~~~~~~  353 (370)
T PRK05937        292 IFLPG------ISEQELYSK-LVETGIRVGVV-CFPTGPFLRVNLHAFNTEDEVDILVSVLATYLEKYQK  353 (370)
T ss_pred             EEeCC------hhHHHHHHH-HHHCCeeEEee-CCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence            22332      123445444 46779988642 2223578999995  6899999999999999887643

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.91  E-value=4.3e-21  Score=177.13  Aligned_cols=315  Identities=13%  Similarity=0.073  Sum_probs=208.6

Q ss_pred             CCCCCCCcHHHHHHHHHHhcCCCCCCC--CCCCCc----HHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh
Q 038416           20 GVSLLSDSTVAEDAVVDALRTAHYNCY--SPTLGV----PSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL   93 (387)
Q Consensus        20 ~~~~~~~~~~v~~a~~~~~~~~~~~~y--~~~~~~----~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l   93 (387)
                      .|.++..+|.++++..++++.-.....  ....|+    .+|++.+|+++        ..++.++.+++..|+..++.+|
T Consensus       111 dYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~--------g~e~all~sSGy~AN~~~i~aL  182 (476)
T PLN02955        111 DYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLK--------KKEDCLVCPTGFAANMAAMVAI  182 (476)
T ss_pred             CccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHH--------CCCcEEEECChHHHHHHHHHHH
Confidence            455788999999999999875211101  012343    78999999998        4578888888888888888887


Q ss_pred             c--------------CCCCeEEEcCCCCcchHHHhhccCC----CceeeeeccCCCCCccCChhhHHHhhcc---CceEE
Q 038416           94 A--------------RPGANILIPRPGYPLYEIHAAGSNN----NLEARHYDLLPEKRWEVDLDGVEALADE---NTVAI  152 (387)
Q Consensus        94 ~--------------~~g~~vl~~~p~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~v  152 (387)
                      .              ++++.|++..-+|.+....++  ..    +.++..++.+       |++.|++.++.   +.++|
T Consensus       183 ~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~--ls~~~~~a~~~~f~HN-------D~~~Le~~L~~~~~~~~~V  253 (476)
T PLN02955        183 GSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVR--LAERQGNVEVFVYRHC-------DMYHLNSLLSSCKMKRKVV  253 (476)
T ss_pred             hhccccccccccccCCCCcEEEEeccchHHHHHHHH--hccccCCceEEEeCCC-------CHHHHHHHHHhCCCCceEE
Confidence            2              455678888888988888877  54    4566665532       67888877743   33444


Q ss_pred             EEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccC-CCccEEEEecCcccccccccceEE
Q 038416          153 VIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFG-SIVPVITLGSISKRWIVPGWRLGW  231 (387)
Q Consensus       153 ~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~s~sK~~~~~g~r~G~  231 (387)
                      ++....++.|.+.|   +++|.++|++||+++|+||+|+.+.++..+......+. ..+..++++|++|++|..|   |+
T Consensus       254 v~EgV~SmdGdiap---L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~~G---Gf  327 (476)
T PLN02955        254 VTDSLFSMDGDFAP---MEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGCHG---GF  327 (476)
T ss_pred             EEeCCCCCCCCcCC---HHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccchhccC---ce
Confidence            44444789999988   88888888899999999999997776543333222222 1345689999999987666   99


Q ss_pred             EEeeCCCCcccchhHHHHHHhhhh--ccCCcch-HHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 038416          232 LVTSDPNGILQNSGFVDSIKGCLN--AASHPVT-FIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPV  308 (387)
Q Consensus       232 i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  308 (387)
                      +++++        ++++.++....  .++++.+ ....++.+.++....  -..+.++++++.+++++.+    ++. . 
T Consensus       328 i~gs~--------~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~--~~~~r~~L~~n~~~fr~~~----G~~-~-  391 (476)
T PLN02955        328 IACSK--------KWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARK--EKWRRKAIWERVKEFKALS----GVD-I-  391 (476)
T ss_pred             eecHH--------HHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHhc----CCC-C-
Confidence            99876        67777775432  2223333 333344444443211  1245677778888887642    444 2 


Q ss_pred             CCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC---CCeEEEEe--eCChHhHHHHHHHHHHHHHH
Q 038416          309 KPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM---KNWLRIAF--AAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       309 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~  382 (387)
                       +  ...+.+.+...     .....+..+| .++||.+.+-.....   ...+||++  .++++|++.+++.|.++...
T Consensus       392 -~--sPI~pI~ig~~-----~~a~~~~~~L-~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~~~~~~  461 (476)
T PLN02955        392 -S--SPIISLVVGNQ-----EKALKASRYL-LKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALSSCLDF  461 (476)
T ss_pred             -C--CCEEEEEeCCH-----HHHHHHHHHH-HHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHHHHHhh
Confidence             1  33333333321     1234455555 567999987554433   24699999  46899999999999887644

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.91  E-value=2.1e-21  Score=180.96  Aligned_cols=296  Identities=15%  Similarity=0.137  Sum_probs=196.0

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHh----hccCCCceeee
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHA----AGSNNNLEARH  125 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~----~~~~~g~~~~~  125 (387)
                      ....++++.+|++.+        .+..++++|+++|+++++.+++++||+|+++...|.+....+    .  ..|+++..
T Consensus        64 p~~~~le~~lA~l~g--------~~~av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~--~~Gi~v~~  133 (433)
T PRK08134         64 PTVAVLEERVAALEG--------GVGAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLR--RFGIETTF  133 (433)
T ss_pred             hHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHh--hCCeEEEE
Confidence            456889999999883        245788999999999999999999999999999998654443    4  58888888


Q ss_pred             eccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccc
Q 038416          126 YDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV  205 (387)
Q Consensus       126 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~  205 (387)
                      ++..       |+++++++++++|++|++.+|+||+|.+.+   +++|.++|+++|+++|+|.+++....    ..++ .
T Consensus       134 vd~~-------d~~~l~~~i~~~TklV~~e~~~np~g~v~D---i~~I~~la~~~gi~livD~t~a~~~~----~~pl-~  198 (433)
T PRK08134        134 VKPG-------DIDGWRAAIRPNTRLLFGETLGNPGLEVLD---IPTVAAIAHEAGVPLLVDSTFTTPYL----LRPF-E  198 (433)
T ss_pred             ECCC-------CHHHHHHhcCCCCeEEEEECCCcccCcccC---HHHHHHHHHHcCCEEEEECCCccccc----CCch-h
Confidence            8752       789999999999999999999999999977   88899999999999999999874221    2222 2


Q ss_pred             cCCCccEEEEecCcccccccccceEEEEeeCCCCcccch-------------------------hHHHHHH--hhhhccC
Q 038416          206 FGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNS-------------------------GFVDSIK--GCLNAAS  258 (387)
Q Consensus       206 ~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~-------------------------~~~~~~~--~~~~~~~  258 (387)
                      +..+   +++.|.+|.++.+|-.+|.+++......+.+.                         .+..+.+  .......
T Consensus       199 ~GaD---~vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~  275 (433)
T PRK08134        199 HGAD---LVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGA  275 (433)
T ss_pred             cCCC---EEEeccccccCCCCCceEEEEEecCccccccccccccccCCcccccccchhhccchhHHHHHHHHHHHHhcCC
Confidence            3333   88999999988888777777663211110000                         0001111  1112333


Q ss_pred             CcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC-----------------ceEEEEEecC
Q 038416          259 HPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ-----------------GAMFVMVKLN  321 (387)
Q Consensus       259 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----------------~g~~~~~~~~  321 (387)
                      ..+++..+.+..-|+.     +..+.++..+++..+.+.|+++|.+..+.+|.                 .|.++.+.+.
T Consensus       276 ~ls~~~A~l~~~gL~t-----l~~R~~~~~~nA~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~~g~gg~~s~~l~  350 (433)
T PRK08134        276 CLSPMNAWQLLQGIET-----LPLRMERHVANTRKVVAFLASHPAVARVAHPELESHPDHALAKRLLPRGAGSVFSFDLK  350 (433)
T ss_pred             CCCHHHHHHHhcCCCc-----HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEEec
Confidence            4455444444333433     78888888999999999999877654333331                 2344555553


Q ss_pred             cccccCCCcHHHHHHHHHHhcCeEEEcCCccC----------------------C-CCeEEEEeeCChHhHHHHHHHHHH
Q 038416          322 VSMLEDIGDDLEFCLKLAKEESVIILPGRTVG----------------------M-KNWLRIAFAAEPATLEDGLERIKA  378 (387)
Q Consensus       322 ~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~----------------------~-~~~~Ri~~~~~~e~~~~~~~~l~~  378 (387)
                      ..    ......+++.+ +=..+..+-|+...                      . ++.+|+|++.  |+.+.+++.|.+
T Consensus       351 ~~----~~~~~~f~~~l-~l~~~~~slG~~~sL~~~p~~~~h~~~~~~~~~~~Gi~~~liRlsvGl--E~~~dli~dl~~  423 (433)
T PRK08134        351 GG----RAAGRKFIESL-KLFSHLANVGDARSLVIHPASTTHFRMDAAALAAAGIGEGTIRLSIGL--EDADDLIDDLKR  423 (433)
T ss_pred             CC----HHHHHHHHHhC-CcceeccccCCCCceeeCCCccCcccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHH
Confidence            10    01122333332 11111111121110                      0 3579999999  677788888888


Q ss_pred             HHHHhhh
Q 038416          379 FCQRHAK  385 (387)
Q Consensus       379 ~~~~~~~  385 (387)
                      +++..++
T Consensus       424 Al~~~~~  430 (433)
T PRK08134        424 ALKAAEK  430 (433)
T ss_pred             HHHhhhh
Confidence            8877654

>TIGR01814 kynureninase kynureninase

Probab=99.91  E-value=1.8e-21  Score=182.29  Aligned_cols=319  Identities=15%  Similarity=0.128  Sum_probs=204.0

Q ss_pred             CCcHHHHHHHHHHhcCC----CCCCCC---CCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCC
Q 038416           25 SDSTVAEDAVVDALRTA----HYNCYS---PTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPG   97 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~----~~~~y~---~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g   97 (387)
                      +.|+.+.+++.+.+...    ....+.   ......+.++.+ +++      ++++++|++++|+|++++.++.++.+++
T Consensus        38 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~------g~~~~~v~~~~~~t~~l~~~~~~~~~~~  110 (406)
T TIGR01814        38 LMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLKL-RLV------GAKEDEVVVMNTLTINLHLLLASFYKPT  110 (406)
T ss_pred             cCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhccc-ccc------CCCCCcEEEeCCchHHHHHHHHHhcCCc
Confidence            45888999998766531    111111   101111222223 343      4678999999999999999999986554


Q ss_pred             ---CeEEEcCCCCcch----HHHhhccCCCcee----eeeccCCCCCccCChhhHHHhh---ccCceEEEEeCCCCCccc
Q 038416           98 ---ANILIPRPGYPLY----EIHAAGSNNNLEA----RHYDLLPEKRWEVDLDGVEALA---DENTVAIVIINPGNPCGN  163 (387)
Q Consensus        98 ---~~vl~~~p~~~~~----~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~l~~~~---~~~~~~v~l~~p~nptG~  163 (387)
                         +.|++...+|++.    ...++  ..|.++    ..++.  .+++.++++.+++.+   ++++++|++++++|.||.
T Consensus       111 ~~~~~i~~~~~~~~s~~~~~~~~~~--~~g~~~~~~~~~~~~--~~~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~  186 (406)
T TIGR01814       111 PKRYKILLEAKAFPSDHYAIESQLQ--LHGLTVEESMVQIEP--REEETLRLEDILDTIEKNGDDIAVILLSGVQYYTGQ  186 (406)
T ss_pred             CCccEEEecCCCCChHHHHHHHHHH--hcCCCcccceEEecc--CCCCccCHHHHHHHHHhcCCCeEEEEEeccccccce
Confidence               3688888899863    33445  668776    34443  334467888888876   468999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCccccc-ccccceEEEEeeCCCCccc
Q 038416          164 VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWI-VPGWRLGWLVTSDPNGILQ  242 (387)
Q Consensus       164 ~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~-~~g~r~G~i~~~~~~~~~~  242 (387)
                      .+|   +++|.++|+++|+++++|++++.    |..+..+...+.+   +++.|.+|+++ .+|  .|..+.++.. ...
T Consensus       187 ~~~---~~~i~~~~~~~g~~~~vD~aq~~----G~~~id~~~~gvD---~~~~s~hK~l~g~pG--~~l~v~~~~~-~~~  253 (406)
T TIGR01814       187 LFD---MAAITRAAHAKGALVGFDLAHAV----GNVPLDLHDWGVD---FACWCTYKYLNAGPG--AGAFVHEKHA-HTE  253 (406)
T ss_pred             ecC---HHHHHHHHHHcCCEEEEEccccc----CCcccccccCCCC---EEEEcCccccCCCCC--eEEEEehhhh-hhc
Confidence            988   88889999999999999999996    3222333333333   88999999863 444  3433333211 000


Q ss_pred             chhHHHHHH----------------hhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcC----C
Q 038416          243 NSGFVDSIK----------------GCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEI----P  302 (387)
Q Consensus       243 ~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~  302 (387)
                      .|.+..+..                ......++++..+..++.++++...+..+++..++...+.+++++.|+++    +
T Consensus       254 ~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~  333 (406)
T TIGR01814       254 RPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKARCGGPP  333 (406)
T ss_pred             CCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            111000000                00001245666777777777776545557788888888888888888764    3


Q ss_pred             CCCCCCCCC----ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe-e--CChHhHHHHHHH
Q 038416          303 CITCPVKPQ----GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF-A--AEPATLEDGLER  375 (387)
Q Consensus       303 ~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~-~--~~~e~~~~~~~~  375 (387)
                      ++.+. .|.    .+..+.+.++.       +..++...| .++||.+...    .++.+|+|+ +  ++++|++++++.
T Consensus       334 ~~~i~-~~~~~~~r~~~v~~~~~~-------~~~~~~~~L-~~~gi~v~~~----~~~~iRiS~~~~~nt~~did~l~~~  400 (406)
T TIGR01814       334 VLTII-TPRDHAQRGCQLSLTHPV-------PGKAVFQAL-IKRGVIGDKR----EPSVIRVAPVPLYNTFVDVYDAVNV  400 (406)
T ss_pred             ceEEe-CCCChhhcCCeEEEEecC-------CHHHHHHHH-HHCCEEEecc----CCCeEEEechhccCCHHHHHHHHHH
Confidence            46533 331    12344445541       345666666 5669987532    246899998 3  488999999999


Q ss_pred             HHHHH
Q 038416          376 IKAFC  380 (387)
Q Consensus       376 l~~~~  380 (387)
                      |++++
T Consensus       401 l~~~~  405 (406)
T TIGR01814       401 LEEIL  405 (406)
T ss_pred             HHHHh
Confidence            98764

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.91  E-value=3.7e-21  Score=179.15  Aligned_cols=298  Identities=16%  Similarity=0.084  Sum_probs=198.4

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHH----hhccCCCceeee
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIH----AAGSNNNLEARH  125 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~----~~~~~~g~~~~~  125 (387)
                      .....|++.++++.        ..+..+++++|+.|+..++.+++++||+|+++...|.+....    +.  ..|+++..
T Consensus        69 p~~~~Le~~lA~l~--------g~~~av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~--~~Gi~v~~  138 (436)
T PRK07812         69 PTQDVVEQRIAALE--------GGVAALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLP--KLGIEVSF  138 (436)
T ss_pred             chHHHHHHHHHHHh--------CCCeEEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhh--cCeEEEEE
Confidence            45678888999887        235678888889999999999999999999999888875533    34  57777776


Q ss_pred             eccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccc
Q 038416          126 YDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV  205 (387)
Q Consensus       126 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~  205 (387)
                      ++ +.     .|++++++++++++++|++.+|+||+|.+.+   +++|.++|+++|+++|+|++++...    ...++ .
T Consensus       139 vd-d~-----~d~e~l~~ai~~~tklV~ie~~sNp~G~v~D---l~~I~~la~~~gi~liVD~t~a~~~----~~~pl-~  204 (436)
T PRK07812        139 VE-DP-----DDLDAWRAAVRPNTKAFFAETISNPQIDVLD---IPGVAEVAHEAGVPLIVDNTIATPY----LIRPL-E  204 (436)
T ss_pred             EC-CC-----CCHHHHHHhCCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccc----cCCch-h
Confidence            64 11     2899999999999999999999999999977   7888899999999999999987421    11222 1


Q ss_pred             cCCCccEEEEecCcccccccccceEEEEeeCCCCccc-----------------------chhHHHHHHh--hhhccCCc
Q 038416          206 FGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQ-----------------------NSGFVDSIKG--CLNAASHP  260 (387)
Q Consensus       206 ~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~-----------------------~~~~~~~~~~--~~~~~~~~  260 (387)
                      +..   .+++.|++|.++..|--+|.+++.....-+.                       ++++..+.+.  ....+...
T Consensus       205 ~Ga---Divv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l  281 (436)
T PRK07812        205 HGA---DIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLGSAI  281 (436)
T ss_pred             cCC---CEEEEecccccCCCCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHHHHHhcCCCC
Confidence            222   2778999999987776677777642210000                       0011111221  12345566


Q ss_pred             chHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC-----------------CceEEEEEecCcc
Q 038416          261 VTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKP-----------------QGAMFVMVKLNVS  323 (387)
Q Consensus       261 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----------------~~g~~~~~~~~~~  323 (387)
                      +++..+.+..-|+.     +..+.++..+++..+.+.|++.|.+..+.+|                 ..|.++.+.+...
T Consensus       282 ~p~~a~l~~rgl~t-----L~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~~  356 (436)
T PRK07812        282 SPFNAFLIAQGLET-----LSLRIERHVANAQRVAEFLEARDEVASVNYAGLPSSPWYERAKRLAPKGTGAVLSFELAGG  356 (436)
T ss_pred             CHHHHHHHhcCcCc-----HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCcCCCceEEEEEecCC
Confidence            66655555444444     7888899999999999999998877655555                 1244555555321


Q ss_pred             cccCCCcHHHHHHHHHHhcCeEEEcCCccC----------------------C-CCeEEEEeeCChHhHHHHHHHHHHHH
Q 038416          324 MLEDIGDDLEFCLKLAKEESVIILPGRTVG----------------------M-KNWLRIAFAAEPATLEDGLERIKAFC  380 (387)
Q Consensus       324 ~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~----------------------~-~~~~Ri~~~~~~e~~~~~~~~l~~~~  380 (387)
                          ......+++.+ +=..+.++-|+...                      . ++.+|+|++.  |+.+.+++.|.+++
T Consensus       357 ----~~~~~~f~~~l-~l~~~a~slG~~~sLi~~p~~~~h~~~~~~~~~~~gi~~~liRlSvGl--Ed~~dli~dl~~Al  429 (436)
T PRK07812        357 ----VEAGKAFVNAL-TLHSHVANIGDVRSLVIHPASTTHSQLTPEEQLATGVTPGLVRLAVGI--EGIDDILADLEAGF  429 (436)
T ss_pred             ----HHHHHHHHHhC-CcceEecccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHH
Confidence                01123444433 21122111121110                      0 3579999998  67888888888888


Q ss_pred             HHhhhc
Q 038416          381 QRHAKK  386 (387)
Q Consensus       381 ~~~~~~  386 (387)
                      +..++.
T Consensus       430 ~~~~~~  435 (436)
T PRK07812        430 AAAKAF  435 (436)
T ss_pred             Hhhhcc
Confidence            876653

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.91  E-value=2.9e-21  Score=178.10  Aligned_cols=301  Identities=19%  Similarity=0.202  Sum_probs=200.8

Q ss_pred             HHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh-cCCCCeEEEcCCCCcch
Q 038416           32 DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL-ARPGANILIPRPGYPLY  110 (387)
Q Consensus        32 ~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~g~~vl~~~p~~~~~  110 (387)
                      +++.+.+..+.+   .......++++.++++++        .+++++++|+++++..++.++ .++||+|+++.++|.++
T Consensus         3 ~~~~~~~~~~~~---~~~~~~~~~~~~la~~~~--------~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~   71 (352)
T cd00616           3 EAVEEVLDSGWL---TLGPKVREFEKAFAEYLG--------VKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVAT   71 (352)
T ss_pred             HHHHHHHHcCCc---cCCHHHHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHH
Confidence            455666655432   223457899999999983        357888889999999999998 58999999999999999


Q ss_pred             HHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccc
Q 038416          111 EIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVY  190 (387)
Q Consensus       111 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~  190 (387)
                      ...+.  ..|.++..+++++ +++.+|++.+++.+++++++|++++   ++|...+   +++|.++|+++|+++|+|+++
T Consensus        72 ~~~~~--~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~v~~~~---~~G~~~~---~~~i~~l~~~~~i~li~D~a~  142 (352)
T cd00616          72 ANAIL--LLGATPVFVDIDP-DTYNIDPELIEAAITPRTKAIIPVH---LYGNPAD---MDAIMAIAKRHGLPVIEDAAQ  142 (352)
T ss_pred             HHHHH--HcCCeEEEEecCC-CcCCcCHHHHHHhcCcCCeEEEEEC---CCCCcCC---HHHHHHHHHHcCCeEEEECCC
Confidence            88888  8999999998854 3567899999999988899888765   6888766   788888999999999999999


Q ss_pred             cccc-cCCCCCccccccCCCccEEEEecCc--ccccccccceEEEEeeCCCCcccchhHHHHHHhhhhcc----------
Q 038416          191 NHLA-FGSTPYVPMGVFGSIVPVITLGSIS--KRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAA----------  257 (387)
Q Consensus       191 ~~~~-~~~~~~~~~~~~~~~~~~~~i~s~s--K~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~----------  257 (387)
                      +... +.+.   .+...    ..+.+.|++  |++  ++.+.|+++.++       +++.++++......          
T Consensus       143 ~~g~~~~~~---~~~~~----~d~~~~S~~~~K~~--~~~~gg~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~  206 (352)
T cd00616         143 ALGATYKGR---KVGTF----GDAGAFSFHPTKNL--TTGEGGAVVTND-------EELAERARLLRNHGRDRDRFKYEH  206 (352)
T ss_pred             CCCCeECCE---EcccC----cceeEEcCCCCCCC--cccCceEEEECC-------HHHHHHHHHHHHcCCCCCCCcccc
Confidence            8432 2111   11111    125667766  875  444568888764       24555554432111          


Q ss_pred             ------CCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----ceEEEEEecCcccccC
Q 038416          258 ------SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ----GAMFVMVKLNVSMLED  327 (387)
Q Consensus       258 ------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~  327 (387)
                            ...+.........     ....+++..++.+++.+++++.|.+++++.....+.    ....+.+.++..   .
T Consensus       207 ~~~~~~~~~~~~~aa~~~~-----~l~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~  278 (352)
T cd00616         207 EILGYNYRLSEIQAAIGLA-----QLEKLDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPE---A  278 (352)
T ss_pred             ceeeeccCcCHHHHHHHHH-----HHHhhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCc---C
Confidence                  1111211111111     123467777888889999999999988888543322    112333334310   0


Q ss_pred             CCcHHHHHHHHHHhcCeEEEcCCccC----------------C-------CCeEEEEee--CChHhHHHHHHHHH
Q 038416          328 IGDDLEFCLKLAKEESVIILPGRTVG----------------M-------KNWLRIAFA--AEPATLEDGLERIK  377 (387)
Q Consensus       328 ~~~~~~~~~~ll~~~gi~v~~g~~~~----------------~-------~~~~Ri~~~--~~~e~~~~~~~~l~  377 (387)
                      ..+..++...| +++||.+.......                .       .+.+|++++  .+++|++.+++.|+
T Consensus       279 ~~~~~~v~~~L-~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~  352 (352)
T cd00616         279 GESRDELIEAL-KEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR  352 (352)
T ss_pred             CCCHHHHHHHH-HHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence            12455666665 66699665221110                0       157999994  68999999988763

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.91  E-value=3.1e-21  Score=177.72  Aligned_cols=220  Identities=17%  Similarity=0.147  Sum_probs=157.2

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHH----HhhccCCCceeee
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEI----HAAGSNNNLEARH  125 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~----~~~~~~~g~~~~~  125 (387)
                      .....|++.++++.+        .+..+++++++.++..++ .++++||+|+++.|.|.+...    .+.  ..|.++..
T Consensus        50 p~~~~Le~~lA~l~g--------~~~~~~~~sG~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~--~~G~~v~~  118 (377)
T PRK07671         50 PTRAALEELIAVLEG--------GHAGFAFGSGMAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLN--RFGIEHTF  118 (377)
T ss_pred             hHHHHHHHHHHHHhC--------CCceEEeCCHHHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHh--cCCeEEEE
Confidence            456788999999883        234455666677887765 567899999999999985432    334  57888887


Q ss_pred             eccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccc
Q 038416          126 YDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV  205 (387)
Q Consensus       126 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~  205 (387)
                      ++.       .|++++++++++++++|++++|+||+|...+   +++|.++|+++|+++|+|++|+...+. .   ++ .
T Consensus       119 v~~-------~d~~~l~~ai~~~tklV~le~P~NPtg~~~d---l~~I~~la~~~g~~lvvD~a~~~~~~~-~---p~-~  183 (377)
T PRK07671        119 VDT-------SNLEEVEEAIRPNTKAIYVETPTNPLLKITD---IKKISTIAKEKGLLTIVDNTFMTPYWQ-S---PI-S  183 (377)
T ss_pred             ECC-------CCHHHHHHhcCCCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCCccccC-C---hh-h
Confidence            753       3789999999999999999999999999865   888888899999999999999753221 1   22 1


Q ss_pred             cCCCccEEEEecCcccccccc-cceEEEEeeCCCCcccchhHHHHHHhhhhc-cCCcchHHHHHHHHHhhhccHHHHHHH
Q 038416          206 FGSIVPVITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGFVDSIKGCLNA-ASHPVTFIQAAVPRIVDETNEAFFAKI  283 (387)
Q Consensus       206 ~~~~~~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~  283 (387)
                      +.   ..+++.|++|.++.++ .-.|++++++       ++++++++..+.. ....++...+.+..-+     ..+..+
T Consensus       184 ~g---~Divv~S~sK~l~G~~~~~~G~~v~~~-------~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l-----~tl~~R  248 (377)
T PRK07671        184 LG---ADIVLHSATKYLGGHSDVVAGLVVVNS-------PELAEDLHFVQNSTGGILGPQDSWLLLRGL-----KTLGIR  248 (377)
T ss_pred             hC---CeEEEecCcccccCCccceeEEEEeCc-------HHHHHHHHHHHHhhcCCCCHHHHHHHHcCc-----ChHHHH
Confidence            22   2488999999987543 3456676644       2577777765542 3444554444433333     236668


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 038416          284 IGLLKETADICYERIKEIPCITCPVKP  310 (387)
Q Consensus       284 ~~~~~~~~~~~~~~l~~~~~~~~~~~~  310 (387)
                      .++..++++.+.+.|++.|.+..+.+|
T Consensus       249 ~~~~~~na~~la~~L~~~~~v~~v~~p  275 (377)
T PRK07671        249 MEEHETNSRAIAEFLNNHPAVNKVYYP  275 (377)
T ss_pred             HHHHHHHHHHHHHHHHcCCCeeEEECC
Confidence            888889999999999987766544444

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.90  E-value=2.7e-21  Score=180.74  Aligned_cols=228  Identities=17%  Similarity=0.113  Sum_probs=163.3

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHH----HhhccCCCceeee
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEI----HAAGSNNNLEARH  125 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~----~~~~~~~g~~~~~  125 (387)
                      .....|++.++++.+        .+..++++++++|+..++.+++++||+|+++.+.|.+...    .+.  ..|.++..
T Consensus        63 p~~~~le~~lA~l~g--------~~~al~~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~--~~G~~v~~  132 (427)
T PRK05994         63 PTNAVLEERVAALEG--------GTAALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFK--SFGWQVRW  132 (427)
T ss_pred             ccHHHHHHHHHHHhC--------CCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHH--hcCcEEEE
Confidence            346788899998872        3468888999999999999999999999999999986433    355  68888888


Q ss_pred             eccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccc
Q 038416          126 YDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV  205 (387)
Q Consensus       126 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~  205 (387)
                      ++.       .|++++++++++++++|++++|+||+|.+++   +++|.++|+++|+++|+|++++...    ...++ .
T Consensus       133 vd~-------~d~~~l~~ai~~~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~a~a~~~----~~~pl-~  197 (427)
T PRK05994        133 ADA-------DDPASFERAITPRTKAIFIESIANPGGTVTD---IAAIAEVAHRAGLPLIVDNTLASPY----LIRPI-E  197 (427)
T ss_pred             ECC-------CCHHHHHHhcCcCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCccccc----cCCcc-c
Confidence            764       2789999999989999999999999999987   7888999999999999999998421    11222 1


Q ss_pred             cCCCccEEEEecCcccccccccceEEEEeeCCCCccc---------c--hh-----HH-----------HHHHhhhhccC
Q 038416          206 FGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQ---------N--SG-----FV-----------DSIKGCLNAAS  258 (387)
Q Consensus       206 ~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~---------~--~~-----~~-----------~~~~~~~~~~~  258 (387)
                      +..   .+++.|++|.++.+|-.+|.+++......+.         .  +.     +.           ...+.....+.
T Consensus       198 ~ga---Divv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  274 (427)
T PRK05994        198 HGA---DIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLGP  274 (427)
T ss_pred             cCC---cEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHHHhcCC
Confidence            223   3889999999887776677766632110000         0  00     11           11111222344


Q ss_pred             CcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 038416          259 HPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKP  310 (387)
Q Consensus       259 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  310 (387)
                      ..+++..+.+..-|+.     +..+.++.++++..+.+.|++.|.+..+.+|
T Consensus       275 ~~~~~~A~l~~~~l~t-----L~~r~~~~~~~a~~la~~L~~~p~v~~v~yP  321 (427)
T PRK05994        275 AISPFNAFLILTGIET-----LPLRMQRHSDNALAVAEWLKGHPKVSWVNYA  321 (427)
T ss_pred             CCCHHHHHHHHcCccc-----HHHHHHHHHHHHHHHHHHHHhCCCccEEECC
Confidence            5555555544444443     7888899999999999999988776544444

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.90  E-value=5.4e-21  Score=177.65  Aligned_cols=343  Identities=13%  Similarity=0.097  Sum_probs=216.7

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      ..++|+.-|......++ .+|.+.+++++++.+..  +++.. ...+.+..+++.+.+..+   ..+.+++++++++|++
T Consensus        40 ~~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~--~~~~~-~~~~~~~~la~~L~~~~~---~~~~v~f~~sGseA~e  112 (408)
T PRK04612         40 REYLDLAAGIAVCGLGH-NDPDLVAALTEQAGKLW--HTSNV-FYSAPPLKLAEELVTASR---FAEKVFLCNSGTEANE  112 (408)
T ss_pred             CEEEEcCccHhhccCCC-CCHHHHHHHHHHHHhcc--ccccc-cCCHHHHHHHHHHHhhCC---CCCEEEEcCchHHHHH
Confidence            34555544432122122 57888999999887531  22221 223445566666654322   1268999999999999


Q ss_pred             HHHHhhcC----C----C-CeEEEcCCCCcchHHHhhccCCCceeee---eccCCC---CCccCChhhHHHhhccCceEE
Q 038416           88 ISLSVLAR----P----G-ANILIPRPGYPLYEIHAAGSNNNLEARH---YDLLPE---KRWEVDLDGVEALADENTVAI  152 (387)
Q Consensus        88 ~~~~~l~~----~----g-~~vl~~~p~~~~~~~~~~~~~~g~~~~~---~~~~~~---~~~~~~~~~l~~~~~~~~~~v  152 (387)
                      .+++....    .    + .+|+....+|++...... +..+.....   -++.+.   -. ..|++.++++++++..++
T Consensus       113 ~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~-s~~~~~~~~~~~~~~~~~~~~~~-~~d~~~l~~~~~~~~~aa  190 (408)
T PRK04612        113 AAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAV-TATAQPKYQEGYEPLPGGFRYVD-FNDVEALEAAMAGGDVAA  190 (408)
T ss_pred             HHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHH-HhcCCcccccCCCCCCCCceEcC-CCCHHHHHHhhCCCCEEE
Confidence            99987541    1    2 468999999988654333 022211100   011100   01 126788888887677888


Q ss_pred             EEeCCCCCccccCC--HHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceE
Q 038416          153 VIINPGNPCGNVFS--YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLG  230 (387)
Q Consensus       153 ~l~~p~nptG~~~~--~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G  230 (387)
                      ++..|.+++|-+++  .+.+++|.++|++||+++|+||+|.++...|..+..   . ..+..+.+.+++|.++ +|+|+|
T Consensus       191 vi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~---~-~~~~~pdi~t~~K~l~-~G~pig  265 (408)
T PRK04612        191 VMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAH---W-QEQVTPDIVTLAKALG-GGFPIG  265 (408)
T ss_pred             EEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhh---h-hcCCCCCEEEEcchhc-CCCceE
Confidence            88899776665544  578999999999999999999999987766542221   1 1123466789999986 789999


Q ss_pred             EEEeeCCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc----CCCCC
Q 038416          231 WLVTSDPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE----IPCIT  305 (387)
Q Consensus       231 ~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~  305 (387)
                      ++++++        ++.+.+.... ..+++.+++.+.++.+.|+...+.   +..++++++.+++.+.|++    .+.+.
T Consensus       266 a~~~~~--------~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~~---~l~~~~~~~g~~l~~~l~~l~~~~~~i~  334 (408)
T PRK04612        266 AMLAGP--------KVAETMQFGAHGTTFGGNPLAAAVARVALRKLASP---QIAANVARQSAALRAGLEALNAEFGVFA  334 (408)
T ss_pred             EEEECH--------HHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhhCCCee
Confidence            999875        5666665432 245667899999998888764432   3344555555555555554    32222


Q ss_pred             CCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHHHHh
Q 038416          306 CPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       306 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      .  ...-|.++.+.+.....   .....+.. .+.++|+.+.+..    .+.+|+.+  ..++++++.++++|.++++++
T Consensus       335 ~--vrg~Gl~~~i~~~~~~~---~~a~~i~~-~l~~~Gvlv~~~g----~~~lRl~Ppl~it~eeid~~l~~l~~~l~~~  404 (408)
T PRK04612        335 Q--VRGRGLMLGAVLAPAHA---GQAGAILD-LAAEHGLLLLQAG----PDVLRFVPALNLTDAELADGLARLRLALADY  404 (408)
T ss_pred             e--eeccceEEEEEecCchh---hHHHHHHH-HHHHCCeEEeeCC----CCEEEEcCCccCCHHHHHHHHHHHHHHHHHH
Confidence            1  22336566666532100   01234444 4567899997742    47899998  468999999999999999875


Q ss_pred             hh
Q 038416          384 AK  385 (387)
Q Consensus       384 ~~  385 (387)
                      -+
T Consensus       405 ~~  406 (408)
T PRK04612        405 VA  406 (408)
T ss_pred             hh
Confidence            43

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.90  E-value=2.7e-21  Score=167.65  Aligned_cols=323  Identities=15%  Similarity=0.188  Sum_probs=211.8

Q ss_pred             CCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCe
Q 038416           20 GVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGAN   99 (387)
Q Consensus        20 ~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~   99 (387)
                      ++.-.+++|++.++|.++-... ...|+..+....+++.+++.+        ....++++.++|+++.+++.+.++||..
T Consensus         6 SDn~~g~~~~m~eam~~a~~~~-~~~YG~D~~~~~~e~~~ae~~--------g~~a~~Fv~sGT~aN~lal~~~~~~~~~   76 (342)
T COG2008           6 SDNVAGPTPEMREALAAANAVG-DDVYGEDPTTNALEQRIAELF--------GKEAALFVPSGTQANQLALAAHCQPGES   76 (342)
T ss_pred             cCccCCCCHHHHHHHHhccccC-CCCCCCCHHHHHHHHHHHHHh--------CCceEEEecCccHHHHHHHHHhcCCCCe
Confidence            3434578999999999987322 246888777788888888887        3389999999999999999999999999


Q ss_pred             EEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc------CceEEEEeCCCCCccccCCHHHHHHH
Q 038416          100 ILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE------NTVAIVIINPGNPCGNVFSYQHLQKI  173 (387)
Q Consensus       100 vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~~~~l  173 (387)
                      |++..-.|-...+......++ +...++..+..+..++++++++.+.+      .+..+++.+.++..|+++|.+++++|
T Consensus        77 vi~~~~aHi~~~E~Ga~~~~~-~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i  155 (342)
T COG2008          77 VICHETAHIYTDECGAPEFFG-GGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAI  155 (342)
T ss_pred             EEEeccccceecccCcHHHHc-CCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHH
Confidence            999888886544332200222 33444555556678999999998764      24566667776689999999999999


Q ss_pred             HHHHHhcCcEEeeccccccc--ccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHH
Q 038416          174 ARTARNLGIIVIADEVYNHL--AFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIK  251 (387)
Q Consensus       174 ~~~~~~~~~~li~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~  251 (387)
                      .++|+++|++|+.|.+--.-  ...+.....+..+   ..++++ ++||..+.+   +|.++.-+       .+++++++
T Consensus       156 ~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~---~D~v~~-~~tK~g~~~---~gAiv~gn-------~~~~~~a~  221 (342)
T COG2008         156 SAVCKEHGLPLHMDGARLANALVALGVALKTIKSY---VDSVSF-CLTKGGGAP---VGAIVFGN-------RDFAKRAR  221 (342)
T ss_pred             HHHHHHhCCceeechHHHHHHHHHcCCCHHHHHhh---CCEEEE-ecccCCcce---eeeEEEcC-------HHHHHHHH
Confidence            99999999999999876531  1112222222222   234444 488985444   57777654       36888777


Q ss_pred             hhhh-ccCC--cchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCC
Q 038416          252 GCLN-AASH--PVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDI  328 (387)
Q Consensus       252 ~~~~-~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  328 (387)
                      ..+. ....  -+.+..+....+|++   .......+.-...+..+.+.|+..||+.+. .|...+++|++++....   
T Consensus       222 ~~rK~~Ggl~~k~r~laA~~~~~l~~---~~~~~~~~Han~mA~~La~~~~~~~G~~~~-~~~~tN~vf~~l~~~~i---  294 (342)
T COG2008         222 RWRKRAGGLMRKARFLAAQGLYALED---DVWRLAADHANAMAARLAEGLEAKPGVKLA-FPVETNMVFVRLPESAI---  294 (342)
T ss_pred             HHHHHhcccHhhhhHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHhhhhcCCceec-cCCcccEEEEECChHHH---
Confidence            6643 2222  233333333344443   212222233334577788888877898854 66778899999875211   


Q ss_pred             CcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHH
Q 038416          329 GDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFC  380 (387)
Q Consensus       329 ~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~  380 (387)
                       +...+ ...+...|+.+.+++     ..+|+.++  ++++++++++..+++++
T Consensus       295 -~~l~~-~~~~~~~~~~~~~~~-----~~vRfvts~a~~~edv~~~~~~~~~~~  341 (342)
T COG2008         295 -EALRL-AGALFYRGVLIGAHG-----EIVRFVTSWATSEEDVDELVAAIKALL  341 (342)
T ss_pred             -HHHHh-hchhheeeeeccCCC-----ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence             11111 112233344443321     46899884  68999999999887764

>PLN02509 cystathionine beta-lyase

Probab=99.90  E-value=3.8e-21  Score=179.55  Aligned_cols=228  Identities=18%  Similarity=0.164  Sum_probs=158.7

Q ss_pred             CCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchH----HHhhccCC
Q 038416           44 NCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYE----IHAAGSNN  119 (387)
Q Consensus        44 ~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~----~~~~~~~~  119 (387)
                      ..|... +. ..++.+.+++.+..    ..+++++++|+++++.+++ .++++||+|+++.|.|.++.    ..+.  ..
T Consensus       125 ~~Y~r~-gn-pt~~aLE~~lA~le----g~e~ai~~~SG~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~~~l~--~~  195 (464)
T PLN02509        125 YDYTRS-GN-PTRDALESLLAKLD----KADRAFCFTSGMAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLSQVVP--RS  195 (464)
T ss_pred             CccCCC-CC-HHHHHHHHHHHHHh----CCCEEEEeCcHHHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHHHHHH--HC
Confidence            356653 33 24555555555433    3456777788888987666 56899999999999999875    3345  67


Q ss_pred             CceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCC
Q 038416          120 NLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTP  199 (387)
Q Consensus       120 g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~  199 (387)
                      |+++..++.       .|++++++++++++++|++++|+||+|..   .++++|+++|+++|+++|+|++|+.... +. 
T Consensus       196 G~~v~~vd~-------~d~e~l~~ai~~~TklV~lesPsNPtG~i---~Dl~~I~~lAk~~g~~lIVD~A~a~~~~-~~-  263 (464)
T PLN02509        196 GVVVKRVNT-------TNLDEVAAAIGPQTKLVWLESPTNPRQQI---SDIRKIAEMAHAQGALVLVDNSIMSPVL-SR-  263 (464)
T ss_pred             CeEEEEeCC-------CCHHHHHHhCCcCCeEEEEECCCCCCCCH---HHHHHHHHHHHHcCCEEEEECCcccccc-CC-
Confidence            888887753       26899999999999999999999999997   6699999999999999999999874322 11 


Q ss_pred             CccccccCCCccEEEEecCcccccccc-cceEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccH
Q 038416          200 YVPMGVFGSIVPVITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNE  277 (387)
Q Consensus       200 ~~~~~~~~~~~~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~  277 (387)
                        ++ ....   .+++.|++|+++.+| .-.|++++++.       .+.+.++.... .....+++..+.+..-|     
T Consensus       264 --pl-~~ga---Divv~S~tK~l~G~gdv~gG~v~~~~~-------~l~~~~~~~~~~~g~~l~p~~A~l~lr~L-----  325 (464)
T PLN02509        264 --PL-ELGA---DIVMHSATKFIAGHSDVMAGVLAVKGE-------KLAKEVYFLQNSEGSGLAPFDCWLCLRGI-----  325 (464)
T ss_pred             --hh-hcCC---cEEEecCcccccCCCccceeEEEeccH-------HHHHHHHHHHHhcCCCcCHHHHHHHHhhh-----
Confidence              22 1222   388999999976543 34577766441       34444443332 22334554444443333     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 038416          278 AFFAKIIGLLKETADICYERIKEIPCITCPVKP  310 (387)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  310 (387)
                      +.+..+.++..++++.+.+.|++.|.+..+.+|
T Consensus       326 ~tL~~R~~r~~~nA~~la~~L~~~p~V~~V~yP  358 (464)
T PLN02509        326 KTMALRIEKQQENARKIAMYLSSHPRVKKVYYA  358 (464)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhcCCCccEEECC
Confidence            347788899999999999999998877655555

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.90  E-value=1.4e-20  Score=173.30  Aligned_cols=310  Identities=18%  Similarity=0.236  Sum_probs=199.0

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh-cCCCCeEEEcC
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL-ARPGANILIPR  104 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~g~~vl~~~  104 (387)
                      .++...+++.+.+..+...+  .    ..+++++.+++.+..    +.+++++|+|+++|+..++.++ +++||+|+++.
T Consensus         9 ~~~~e~~a~~~~~~~~~~~~--~----g~~~~~~e~~la~~~----g~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~   78 (376)
T TIGR02379         9 VTGQELEYIAEAISEGKLSG--D----GPFSRRCETWLENRT----GTKKALLTPSCTAALEMAALLLDIQPGDEVIMPS   78 (376)
T ss_pred             CCHHHHHHHHHHHHcCCccC--C----cHHHHHHHHHHHHHh----CCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECC
Confidence            45666888888887643311  1    234444444444432    3468999999999999999887 79999999999


Q ss_pred             CCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEE
Q 038416          105 PGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIV  184 (387)
Q Consensus       105 p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~l  184 (387)
                      ++|..+...+.  ..|.+++.+++++ +++.+|++++++++++++++|+   |+||+|...+   +++|.++|+++|++|
T Consensus        79 ~t~~~~~~~~~--~~G~~~v~vd~d~-~~~~~d~~~le~~i~~~tk~Ii---p~~~~G~~~d---~~~I~~la~~~~i~v  149 (376)
T TIGR02379        79 YTFVSTANAFV--LRGAKIVFVDIRP-DTMNIDETLIESAITHRTKAIV---PVHYAGVACD---MDTIMALANKHQLFV  149 (376)
T ss_pred             CCcHHHHHHHH--HcCCEEEEEecCC-CcCCCCHHHHHHhcCcCceEEE---EeCCCCCccC---HHHHHHHHHHCCCEE
Confidence            99999888888  8999999999864 3477999999999988898886   5667898876   778999999999999


Q ss_pred             eecccccccc-cCCCCCccccccCCCccEEEEecCc--ccccccccceEEEEeeCCCCcccchhHHHHHHhhhhccCC--
Q 038416          185 IADEVYNHLA-FGSTPYVPMGVFGSIVPVITLGSIS--KRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASH--  259 (387)
Q Consensus       185 i~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~s~s--K~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--  259 (387)
                      |+|++++.+. +.+.....+.       .+.+.||+  |.+ .+|.+.|++++++       +++.++++..+..+..  
T Consensus       150 IeDaa~~~g~~~~~~~~g~~~-------~~~~fSf~~~K~l-~~g~~gG~v~~~~-------~~~~~~~~~~~~~g~~~~  214 (376)
T TIGR02379       150 IEDAAQGVMSTYKGRALGSIG-------HLGTFSFHETKNY-TSGGEGGALLIND-------QAFIERAEIIREKGTNRS  214 (376)
T ss_pred             EEECccccCCccCCcccCCCC-------CEEEEeCCCCCcC-cccCCceEEEECC-------HHHHHHHHHHHHhCCCCc
Confidence            9999998754 5443332221       13344443  553 5566789998875       3677777765432211  


Q ss_pred             --------------------cchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCC--C-CCCCCCCCc---e
Q 038416          260 --------------------PVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIP--C-ITCPVKPQG---A  313 (387)
Q Consensus       260 --------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~-~~~~~~~~~---g  313 (387)
                                          ++. .++++.  +.  .-..+++..++.+++.++..+.|.+++  + +.....+.+   .
T Consensus       215 ~~~~~~~~~~~~~~~g~n~~~~~-~~Aa~g--~~--qL~~l~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~  289 (376)
T TIGR02379       215 QFFRGEVDKYTWRDIGSSYLPSE-LQAAYL--WA--QLEQADRINQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHN  289 (376)
T ss_pred             cccccCCCcceeeeecccCCccH-HHHHHH--HH--HHHHhHHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeee
Confidence                                111 111111  11  123456666666666666777776643  1 221111211   1


Q ss_pred             -EEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCc----cC------C------------CCeEEEEe--eCChHh
Q 038416          314 -MFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRT----VG------M------------KNWLRIAF--AAEPAT  368 (387)
Q Consensus       314 -~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~----~~------~------------~~~~Ri~~--~~~~e~  368 (387)
                       .++++.++..     .+..++...| +++||.+.++..    +.      .            ...+.+-+  ..++++
T Consensus       290 ~~~~~i~~~~~-----~~r~~l~~~L-~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~  363 (376)
T TIGR02379       290 AHMFYIKLKDE-----DDRNELIKYL-KEQEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKED  363 (376)
T ss_pred             eEEEEEEECCc-----CCHHHHHHHH-HHCCCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHHH
Confidence             1234445421     1345666655 777998774321    00      0            12344444  357899


Q ss_pred             HHHHHHHHHHHH
Q 038416          369 LEDGLERIKAFC  380 (387)
Q Consensus       369 ~~~~~~~l~~~~  380 (387)
                      ++..++.|++++
T Consensus       364 ~~~i~~~i~~~~  375 (376)
T TIGR02379       364 QARVIQTICDYL  375 (376)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988754

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.90  E-value=4.3e-21  Score=176.78  Aligned_cols=284  Identities=18%  Similarity=0.149  Sum_probs=183.3

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchH----HHhhccCCCceeee
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYE----IHAAGSNNNLEARH  125 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~----~~~~~~~~g~~~~~  125 (387)
                      .....|++.++++.+        .+..+++++++.|+.+++ .++++||+|+++.|.|.+..    ..+.  ..|+++..
T Consensus        50 p~~~~Le~~la~l~g--------~~~al~~~SG~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~--~~gi~v~~  118 (380)
T PRK06176         50 PTRFALEELIADLEG--------GVKGFAFASGLAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLV--KNGLSCTI  118 (380)
T ss_pred             hhHHHHHHHHHHHhC--------CCCEEEECCHHHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHHHHHH--hcCeEEEE
Confidence            346788999998872        334566677778998766 46789999999999997653    3345  67888777


Q ss_pred             eccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccc
Q 038416          126 YDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV  205 (387)
Q Consensus       126 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~  205 (387)
                      ++.       .|++++++++++++++|++++|+||+|..++   +++|.++|+++|+++|+|++|+...+. .   ++ .
T Consensus       119 vd~-------~d~e~l~~ai~~~t~lV~lesP~Nptg~~~d---i~~I~~la~~~gi~vivD~t~a~~~~~-~---p~-~  183 (380)
T PRK06176        119 IDT-------SDLSQIKKAIKPNTKALYLETPSNPLLKITD---LAQCASVAKDHGLLTIVDNTFATPYYQ-N---PL-L  183 (380)
T ss_pred             cCC-------CCHHHHHHhcCcCceEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEECCccccccC-C---cc-c
Confidence            653       3789999999999999999999999999976   778889999999999999999853321 1   22 1


Q ss_pred             cCCCccEEEEecCcccccccc-cceEEEEeeCCCCcccchhHHHHHHhhhhc-cCCcchHHHHHHHHHhhhccHHHHHHH
Q 038416          206 FGSIVPVITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGFVDSIKGCLNA-ASHPVTFIQAAVPRIVDETNEAFFAKI  283 (387)
Q Consensus       206 ~~~~~~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~  283 (387)
                      ...   .+++.|++|.++.++ .-.|+++.++       +++.++++..+.. ....++...+.+...++     .+..+
T Consensus       184 ~ga---Divv~S~tK~l~g~~d~~gG~vv~~~-------~~~~~~~~~~~~~~G~~~~~~~~~l~~~gl~-----tl~~R  248 (380)
T PRK06176        184 LGA---DIVVHSGTKYLGGHSDVVAGLVTTNN-------EALAQEIAFFQNAIGGVLGPQDSWLLQRGIK-----TLGLR  248 (380)
T ss_pred             cCC---CEEEecCceeccCCccceeeEEEecH-------HHHHHHHHHHHHHhcCCCCHHHHHHHHhccC-----cHHHH
Confidence            222   388999999987655 3456666543       2466666654432 23334444333322222     24566


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCC----------------ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEE
Q 038416          284 IGLLKETADICYERIKEIPCITCPVKPQ----------------GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIIL  347 (387)
Q Consensus       284 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~  347 (387)
                      .+++.+++..+.+.|++.|.+..+.+|.                .|..+.+.+...     .....+++.+ +-..+.+.
T Consensus       249 ~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~~-----~~~~~f~~~l-~~~~~~~s  322 (380)
T PRK06176        249 MEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKND-----SEAVAFVESL-KLFILGES  322 (380)
T ss_pred             HHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCH-----HHHHHHHHcC-CcceEccC
Confidence            6666777778888887766554333332                244555566310     1122333322 11111111


Q ss_pred             cCCcc----------------------CC-CCeEEEEeeCChHhHHHHHHHHHHHHHH
Q 038416          348 PGRTV----------------------GM-KNWLRIAFAAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       348 ~g~~~----------------------~~-~~~~Ri~~~~~~e~~~~~~~~l~~~~~~  382 (387)
                      -|+..                      +. ++.+|+|++.  |+.+.+++.|++++++
T Consensus       323 ~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl--E~~~dli~dl~~Al~~  378 (380)
T PRK06176        323 LGGVESLVGIPAFMTHACIPKEQREAAGIRDGLVRLSVGI--EHEQDLLEDLEQAFAK  378 (380)
T ss_pred             CCCCCceeeCCcccccccCCHHHHHhcCCCcCeEEEEecc--CCHHHHHHHHHHHHhh
Confidence            11110                      00 3579999998  6788888888888865

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.90  E-value=7.2e-21  Score=176.11  Aligned_cols=316  Identities=14%  Similarity=0.110  Sum_probs=205.2

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh-cCCCCeEEEcC
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL-ARPGANILIPR  104 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~g~~vl~~~  104 (387)
                      .++.-.+++.+.+..... .++  ....+|++.++++++        .+++++++|+++|+.+++.++ +++||+|+++.
T Consensus        12 ~~~~e~~~~~~~l~~~~~-~~g--~~~~~le~~la~~~g--------~~~~v~~~sgt~al~lal~al~~~~Gd~Viv~~   80 (379)
T PRK11658         12 MGDEELAAVKEVLRSGWI-TTG--PKNQALEQAFCQLTG--------NQHAIAVSSATAGMHITLMALGIGPGDEVITPS   80 (379)
T ss_pred             CCHHHHHHHHHHHHcCCc-cCC--HhHHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHcCCCCCCEEEECC
Confidence            346668888888876433 222  356899999999993        246888999999999999999 79999999999


Q ss_pred             CCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEE
Q 038416          105 PGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIV  184 (387)
Q Consensus       105 p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~l  184 (387)
                      ++|..+...+.  ..|++++.+++++ +++.+|++++++++++++++|+   |+|++|...+   +++|.++|+++|+++
T Consensus        81 ~~~~~~~~~~~--~~G~~~v~vd~~~-~~~~~d~~~l~~~i~~~tkav~---~~~~~G~~~d---~~~i~~~a~~~gi~v  151 (379)
T PRK11658         81 LTWVSTLNMIV--LLGATPVMVDVDR-DTLMVTPEAIEAAITPRTKAII---PVHYAGAPAD---LDAIRAIGERYGIPV  151 (379)
T ss_pred             CcHHHHHHHHH--HcCCEEEEEecCC-CcCCcCHHHHHHhcccCCeEEE---EeCCCCCcCC---HHHHHHHHHHcCCeE
Confidence            99999988888  8999999999864 3467899999999988898887   5557898865   788899999999999


Q ss_pred             eecccccc-cccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhhccCCcc--
Q 038416          185 IADEVYNH-LAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPV--  261 (387)
Q Consensus       185 i~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  261 (387)
                      |+|++++. ..+.+..   +...   .  +.+.||++...+++.+.|+++.++       +++.++++.....+...+  
T Consensus       152 i~D~a~a~g~~~~~~~---~g~~---g--~~~~Sf~~~K~l~~g~GG~v~~~~-------~~~~~~~~~~~~~G~~~~~~  216 (379)
T PRK11658        152 IEDAAHAVGTYYKGRH---IGAR---G--TAIFSFHAIKNITCAEGGLVVTDD-------DELADRLRSLKFHGLGVDAF  216 (379)
T ss_pred             EEECCCccCCeECCee---cCCC---C--CEEEeCCCCCcCcccCceEEEECC-------HHHHHHHHHHHHcCCCcchh
Confidence            99999984 3333321   2111   1  134566655556677788888754       256666665432111000  


Q ss_pred             ------------------hHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----ceEEE-EE
Q 038416          262 ------------------TFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ----GAMFV-MV  318 (387)
Q Consensus       262 ------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~g~~~-~~  318 (387)
                                        ++....+.+++.......+++..++.+++.+.+.+.|++++... +..|.    ..+++ .+
T Consensus       217 ~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l~~~~~~r~~~a~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~~  295 (379)
T PRK11658        217 DRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAKLEALNARRREIAARYLQALADLPFQP-LSLPAWPHQHAWHLFII  295 (379)
T ss_pred             hhhcccCCCcceeeccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-CcCCCCCCceeEEEEEE
Confidence                              00001111122211235577778888888888888998875333 21222    12222 23


Q ss_pred             ecCcccccCCCcHHHHHHHHHHhcCeEEEcCCc-------cC-------C-------CCeEEEEe--eCChHhHHHHHHH
Q 038416          319 KLNVSMLEDIGDDLEFCLKLAKEESVIILPGRT-------VG-------M-------KNWLRIAF--AAEPATLEDGLER  375 (387)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~-------~~-------~-------~~~~Ri~~--~~~~e~~~~~~~~  375 (387)
                      .++... .+ .+..++...| +++||.+.....       |.       .       ...+-+-+  ..++++++..++.
T Consensus       296 ~~~~~~-~~-~~r~~~~~~L-~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~  372 (379)
T PRK11658        296 RVDEER-CG-ISRDALMEAL-KERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITA  372 (379)
T ss_pred             EECCcc-cc-CCHHHHHHHH-HHCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHH
Confidence            343210 01 1345666665 667987653210       00       0       12333333  3578999999999


Q ss_pred             HHHHH
Q 038416          376 IKAFC  380 (387)
Q Consensus       376 l~~~~  380 (387)
                      |++++
T Consensus       373 i~~~~  377 (379)
T PRK11658        373 LQQIA  377 (379)
T ss_pred             HHHHH
Confidence            88765

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.90  E-value=7e-21  Score=174.18  Aligned_cols=288  Identities=13%  Similarity=0.111  Sum_probs=199.2

Q ss_pred             CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHh----hccCCCceee
Q 038416           49 TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHA----AGSNNNLEAR  124 (387)
Q Consensus        49 ~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~----~~~~~g~~~~  124 (387)
                      .+....|++.++++-        ..+..++++||+.|+..++.+++++||+|+++...|.++...+    +  ..|+++.
T Consensus        61 nPt~~~le~~la~LE--------g~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~--~~Gi~v~  130 (395)
T PRK08114         61 TLTHFSLQEAMCELE--------GGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILS--KLGVTTT  130 (395)
T ss_pred             ChhHHHHHHHHHHHh--------CCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHH--hcCcEEE
Confidence            456678888888865        4568888888999999999999999999999999998776554    5  6898888


Q ss_pred             eeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhc--CcEEeecccccccccCCCCCcc
Q 038416          125 HYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNL--GIIVIADEVYNHLAFGSTPYVP  202 (387)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~--~~~li~D~~~~~~~~~~~~~~~  202 (387)
                      .++.       .|.++++++++++|++|++.+|+||+|.+.+   +++|+++|+++  |+++++|.+++...    ... 
T Consensus       131 ~vd~-------~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~D---I~~Ia~ia~~~g~g~~lvVDnT~a~p~----~~~-  195 (395)
T PRK08114        131 WFDP-------LIGADIAKLIQPNTKVVFLESPGSITMEVHD---VPAIVAAVRSVNPDAVIMIDNTWAAGV----LFK-  195 (395)
T ss_pred             EECC-------CCHHHHHHhcCCCceEEEEECCCCCCCEeec---HHHHHHHHHHhCCCCEEEEECCCcccc----ccC-
Confidence            8763       3678899999999999999999999999977   88899999998  49999999998521    111 


Q ss_pred             ccccCCCccEEEEecCcccccccc-cceEEEEeeCCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccHHHH
Q 038416          203 MGVFGSIVPVITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFF  280 (387)
Q Consensus       203 ~~~~~~~~~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~  280 (387)
                      ...+..   .+++.|.+|.++.++ .-.|.++.++        +.++.++... ..+...+++..+.+..-|+.     +
T Consensus       196 pl~~Ga---Divv~S~tKyl~Ghsdv~~G~v~~~~--------~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~T-----L  259 (395)
T PRK08114        196 ALDFGI---DISIQAGTKYLVGHSDAMIGTAVANA--------RCWEQLRENSYLMGQMVDADTAYMTSRGLRT-----L  259 (395)
T ss_pred             HHHcCC---cEEEEcCcccccCCCcceeEEEEcCH--------HHHHHHHHHHHhccCCCCHHHHHHHHcCCCc-----H
Confidence            222333   399999999876554 5677666543        4555555433 24556667666665555554     7


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----------------ceEEEEEecCcccccCCCcHHHHHHHHHHhcCe
Q 038416          281 AKIIGLLKETADICYERIKEIPCITCPVKPQ----------------GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESV  344 (387)
Q Consensus       281 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi  344 (387)
                      .-+.++..+++..+.+.|++.|.+..+.+|.                .|.++.+.+... . +......+++.+ +-..+
T Consensus       260 ~lR~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~~-~-~~~~~~~f~~~l-~l~~~  336 (395)
T PRK08114        260 GVRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKK-L-TDEQLANYLDNF-SLFSM  336 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecCc-c-cHHHHHHHHHhC-Cccee
Confidence            7788999999999999999887665554542                344555555420 0 000122333332 11111


Q ss_pred             EEEcCCcc--------------------C-CCCeEEEEeeCChHhHHHHHHHHHHHHHH
Q 038416          345 IILPGRTV--------------------G-MKNWLRIAFAAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       345 ~v~~g~~~--------------------~-~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~  382 (387)
                      .++-|+.-                    + .++.+|+|++.  |+.+.+++.|.++++.
T Consensus       337 a~SlGg~~SLi~~~~~~~~~~~~~~~~~~~~~~liRlSvGl--Ed~~DLi~Dl~~Al~~  393 (395)
T PRK08114        337 AYSWGGFESLILANQPEEIAAIRPAGEVDFTGTLIRLHIGL--EDVDDLIADLAAGFAR  393 (395)
T ss_pred             ecccCCccceeccCCchhhhccCChhHhcCCCCeEEEEecc--CCHHHHHHHHHHHHHh
Confidence            11111100                    0 12579999998  6778888888888765

>PLN02624 ornithine-delta-aminotransferase

Probab=99.90  E-value=5.4e-21  Score=181.09  Aligned_cols=326  Identities=14%  Similarity=0.107  Sum_probs=200.9

Q ss_pred             CcHHHHHHHHHHhcCCCCCC-CCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC---------
Q 038416           26 DSTVAEDAVVDALRTAHYNC-YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR---------   95 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~-y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~---------   95 (387)
                      .+|.+.+++++++....... +.......+|.+.+++++        ..+.++++++|++|++.+++....         
T Consensus        92 ~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~L~~~~--------~~~~~~f~~SGseA~e~AlklAr~~~~~~~g~~  163 (474)
T PLN02624         92 CHPKIIKALTEQAEKLTLSSRAFYNDKFPEFAEYLTSMF--------GYDMVLPMNTGAEGVETAIKLARKWGYEKKGIP  163 (474)
T ss_pred             CCHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHhhc--------CCCeEEEeCChHHHHHHHHHHHHHHHHhhcCCC
Confidence            48999999999998632211 111223345555555543        246899999999999999986432         


Q ss_pred             CC-CeEEEcCCCCcchHHHhhccCCCceeee---eccCCC---CCccCChhhHHHhhc---cCceEEEEeCCCCCccccC
Q 038416           96 PG-ANILIPRPGYPLYEIHAAGSNNNLEARH---YDLLPE---KRWEVDLDGVEALAD---ENTVAIVIINPGNPCGNVF  165 (387)
Q Consensus        96 ~g-~~vl~~~p~~~~~~~~~~~~~~g~~~~~---~~~~~~---~~~~~~~~~l~~~~~---~~~~~v~l~~p~nptG~~~  165 (387)
                      ++ ..|+....+|++...... +..+-....   .|..+.   -.+ -|++.+++.++   ++..+|++..++|++|.++
T Consensus       164 ~~~~~ii~~~~~yHG~t~~~~-s~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~  241 (474)
T PLN02624        164 KNEAIIVSCCGCFHGRTLAAI-SMSCDNEATRGFGPLLPGHLKVDF-GDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVI  241 (474)
T ss_pred             CCCcEEEEECCCcCCCCHHHh-hcCCCccccccCCCCCCCceEeCC-CCHHHHHHHHHhCCCCEEEEEECCccCCCCCcC
Confidence            12 357778888887643333 011111000   011000   000 16788888775   2456677777799999987


Q ss_pred             CHH-HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccch
Q 038416          166 SYQ-HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNS  244 (387)
Q Consensus       166 ~~~-~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~  244 (387)
                      |++ .+++|.++|++||+++|+||+|.++...|.... .........   +.+++|.++.+++++|+++.++        
T Consensus       242 p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a-~~~~~i~pD---iv~lsK~lggG~~pigav~~~~--------  309 (474)
T PLN02624        242 PPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLA-CDWEEVRPD---VVILGKALGGGVIPVSAVLADK--------  309 (474)
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhh-HHhcCCCCC---EEEecccccCCCCcceeeeecH--------
Confidence            766 499999999999999999999998766654222 111111112   3347899987779999999875        


Q ss_pred             hHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc----CCC-CCCCCCCCceEEEEE
Q 038416          245 GFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE----IPC-ITCPVKPQGAMFVMV  318 (387)
Q Consensus       245 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~-~~~~~~~~~g~~~~~  318 (387)
                      ++.+.+..... .+++.+++.+.++.+.|+...+..+.   +...++.+.+++.|++    ++. +..+ .+ .|.++.+
T Consensus       310 ~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~~~l~---~~~~~~~~~l~~~L~~l~~~~~~~i~~v-rg-~G~~~~i  384 (474)
T PLN02624        310 DVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQDEKLA---ERSAKLGQELRDQLQKIQKQFPKLIKEV-RG-RGLLNAV  384 (474)
T ss_pred             HHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHHhchHH---HHHHHHHHHHHHHHHHHHHhCCCceEEE-Ee-eEEEEEE
Confidence            56665543322 34567888888888888754332222   2333333333333333    332 2211 23 3445555


Q ss_pred             ecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHHHHhh
Q 038416          319 KLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      .++.... +.....++...+ .++||.+.|+.    .+++||++  ..+++++++++++|.++++...
T Consensus       385 ~l~~~~~-~~~~a~~~~~~L-~e~GV~v~p~~----~~~lR~~p~l~~t~e~id~~l~~L~~~l~~~~  446 (474)
T PLN02624        385 VLNSPKL-GPVSAYDVCLKL-KERGLLAKPTH----DTIIRLAPPLSISEDELQECSKALSDVLEHDL  446 (474)
T ss_pred             EecCCCc-ChHHHHHHHHHH-HhCCeEEecCC----CCEEEEECCccCCHHHHHHHHHHHHHHHHHHH
Confidence            5543110 001234566655 67799998863    57899997  5689999999999999887644

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.90  E-value=8.1e-21  Score=177.68  Aligned_cols=329  Identities=18%  Similarity=0.172  Sum_probs=204.4

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc--CCCCeEEEc
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA--RPGANILIP  103 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~g~~vl~~  103 (387)
                      .+|.+.+++++++.+.....+..  ...+.+..+++.+.+..+. ...+.+++++++++|++.+++...  ....+|+..
T Consensus        57 ~~p~v~~ai~~ql~~~~~~~~~~--~~~~~~~~la~~l~~~~p~-~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~  133 (421)
T PRK06777         57 RHPKVVAAVRQQLDQFTHTAYQI--VPYASYVTLAERINALAPI-DGPAKTAFFTTGAEAVENAVKIARAYTGRPGVIAF  133 (421)
T ss_pred             CCHHHHHHHHHHHhhcccccccc--cCChHHHHHHHHHHHhCCC-CCCceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEE
Confidence            57789999999988632212211  1123344555555443221 124689999999999999998753  223678889


Q ss_pred             CCCCcchHHHhhccC-CCce-------------eeeeccCCCCC---ccCChhhHHHhhc----cCceEEEEeCC-CCCc
Q 038416          104 RPGYPLYEIHAAGSN-NNLE-------------ARHYDLLPEKR---WEVDLDGVEALAD----ENTVAIVIINP-GNPC  161 (387)
Q Consensus       104 ~p~~~~~~~~~~~~~-~g~~-------------~~~~~~~~~~~---~~~~~~~l~~~~~----~~~~~v~l~~p-~npt  161 (387)
                      ..+|++....+.  . .+..             +..++.+....   ...+++.+++.+.    +...+.++..| ++..
T Consensus       134 ~~~yHG~t~~~~--s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~  211 (421)
T PRK06777        134 GGAFHGRTLLTM--ALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQGEG  211 (421)
T ss_pred             cCCcCCccHHHH--hhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCCCceEEEEECCccCCC
Confidence            999988754443  2 1210             11111111100   0113556777664    23334455555 7778


Q ss_pred             cc-cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCc
Q 038416          162 GN-VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGI  240 (387)
Q Consensus       162 G~-~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~  240 (387)
                      |. .+|++.+++|.++|++||+++|+||+|.++.+.|..+ ....++....   +.+++|.++ +|+|+||+++++    
T Consensus       212 G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~-~~~~~~~~pD---iv~~sK~l~-~G~pigav~~~~----  282 (421)
T PRK06777        212 GFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLF-AMEYYDVKPD---LITMAKSLG-GGMPISAVVGRA----  282 (421)
T ss_pred             CCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchh-hhhhcCCCCC---EEeeehhhc-CCCceEEEEEcH----
Confidence            86 5788999999999999999999999999987766422 2222332222   337999987 899999999976    


Q ss_pred             ccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc----CCCCCCCCCCCceEE
Q 038416          241 LQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE----IPCITCPVKPQGAMF  315 (387)
Q Consensus       241 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~g~~  315 (387)
                          ++.+.+.... ..+++.+++.+.++.+.|+...+   ++..++++++.+++.+.|++    .|.+..+ .+.+.++
T Consensus       283 ----~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v-rg~G~~~  354 (421)
T PRK06777        283 ----EVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAE---EKLCQRALILGAHLVEVLEKAKASCPAIVDI-RARGSMV  354 (421)
T ss_pred             ----HHHhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEe-cCceEEE
Confidence                6766665432 24667899999999998875333   23445555566666666654    3433322 4554444


Q ss_pred             EEEecCcccccCCCcHHHHH---HHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHHH
Q 038416          316 VMVKLNVSMLEDIGDDLEFC---LKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~---~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~  381 (387)
                       .+.+..+. .+. +..++.   ...+.++||.+.|+..|+  +++|+.+  ..+++++++++++|.+++.
T Consensus       355 -~i~~~~~~-~~~-~~~~~~~~l~~~~~~~Gv~i~~~~~~g--~~lr~~ppl~i~~~~i~~~~~~l~~~l~  420 (421)
T PRK06777        355 -AVEFNDPQ-TGK-PSPEFTRQYQRQALEEGLLLLSCGVHG--NVIRFLYPLTIPDAQFSKALNILTRLLA  420 (421)
T ss_pred             -EEEEecCc-cCC-ccHHHHHHHHHHHHhCCeEEeecCCCC--CEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence             44443210 000 112222   222456799999976553  6899999  4689999999999988874

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.90  E-value=7.4e-21  Score=177.89  Aligned_cols=315  Identities=14%  Similarity=0.142  Sum_probs=203.0

Q ss_pred             CcHHHHHHHHHHhcCCCC-CCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC---------
Q 038416           26 DSTVAEDAVVDALRTAHY-NCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR---------   95 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~-~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~---------   95 (387)
                      .+|.+.+++++++..... ..........+|.+.+++++        ..+.++++++|++|++.+++.+..         
T Consensus        54 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------~~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~  125 (401)
T TIGR01885        54 CHPKIVKALTEQAQKLTLSSRAFYNDVFGEFAEYVTKLF--------GYDKVLPMNTGAEAVETAIKLARKWGYKVKGIP  125 (401)
T ss_pred             CCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhc--------CCCEEEEeCccHHHHHHHHHHHHHHhhhhcCCC
Confidence            479999999998875221 11001122345555555554        236899999999999999998521         


Q ss_pred             C-CCeEEEcCCCCcch-HHHhhccCCCc------------eeeeeccCCCCCccCChhhHHHhhc---cCceEEEEeCCC
Q 038416           96 P-GANILIPRPGYPLY-EIHAAGSNNNL------------EARHYDLLPEKRWEVDLDGVEALAD---ENTVAIVIINPG  158 (387)
Q Consensus        96 ~-g~~vl~~~p~~~~~-~~~~~~~~~g~------------~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~  158 (387)
                      . .+.|+....+|++. ...+.  ..+.            ++..++.       .|+++++++++   ++..+|++..++
T Consensus       126 ~~~~~i~~~~~~yhg~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~~~~~~avi~E~v~  196 (401)
T TIGR01885       126 ENQAIIVSAKGNFHGRTLGAIS--MSTDPDSRTNFGPYVPGFKKIPY-------NNLEALEEALEDHGPNVCAFIVEPIQ  196 (401)
T ss_pred             CCCCEEEEECCCcCcccHHHHh--CcCCcccccccCCCCCCceEeCC-------CCHHHHHHHHHhcCCCEEEEEEeCcc
Confidence            2 35777888888753 33333  2221            1122211       16788888774   344566666668


Q ss_pred             CCccccCCHH-HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCC
Q 038416          159 NPCGNVFSYQ-HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDP  237 (387)
Q Consensus       159 nptG~~~~~~-~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~  237 (387)
                      +++|...+++ .+++|.++|++||+++|+||+|.++.+.|.... +........++   +++|.++.+++|+|++++++ 
T Consensus       197 ~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~-~~~~~~~~di~---~~gK~l~~g~~~ig~v~~~~-  271 (401)
T TIGR01885       197 GEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLC-VDHENVKPDIV---LLGKALSGGVYPVSAVLADD-  271 (401)
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhH-HhhcCCCCCEE---EeeccccCCCCCcEEEEEcH-
Confidence            9999988644 699999999999999999999988766664322 11111112233   46799877669999999875 


Q ss_pred             CCcccchhHHHHHHhh-hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-CCCceEE
Q 038416          238 NGILQNSGFVDSIKGC-LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPV-KPQGAMF  315 (387)
Q Consensus       238 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~g~~  315 (387)
                             ++++.+... ...+++.+++.+.++.++|+...++.   ..++.+++.+++++.|++++ ..++. .+..|.+
T Consensus       272 -------~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~~~---l~~~~~~~~~~~~~~L~~l~-~~~~~~~~g~g~~  340 (401)
T TIGR01885       272 -------DVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEEEK---LAENAEKLGEIFRDQLKKLP-KPIITEVRGRGLL  340 (401)
T ss_pred             -------HHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhcc-CCceeEEeecCee
Confidence                   677766542 22345667888888888887543333   33556666788888888763 22111 1223545


Q ss_pred             EEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHH
Q 038416          316 VMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFC  380 (387)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~  380 (387)
                      ..+.++.... + ....++...+ .++||.+.|+.    .+.+|+++  ..+++++++++++|.+++
T Consensus       341 ~~i~~~~~~~-~-~~~~~l~~~l-~~~Gv~v~~~~----~~~lRi~p~l~~t~~~i~~~l~~l~~~l  400 (401)
T TIGR01885       341 NAIVIDESKT-G-RTAWDLCLKL-KEKGLLAKPTH----GNIIRLAPPLVITEEQLDEGLEIIKKVI  400 (401)
T ss_pred             EEEEeccCcc-h-hHHHHHHHHH-HhCCEEEEecC----CCEEEEeCCccCCHHHHHHHHHHHHHHh
Confidence            5544543210 0 1245666666 56799998853    57899998  468999999999998775

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.90  E-value=1.1e-20  Score=172.59  Aligned_cols=291  Identities=20%  Similarity=0.216  Sum_probs=194.9

Q ss_pred             CCCCC--CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhh--ccCC
Q 038416           44 NCYSP--TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAA--GSNN  119 (387)
Q Consensus        44 ~~y~~--~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~--~~~~  119 (387)
                      ..|+.  .+....|++.++++.        ..+.++++++|+.|+..++.+++++||+|+++...|.+....+.  ....
T Consensus        47 ~~Y~R~gnPt~~~le~~la~Le--------~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~  118 (386)
T PF01053_consen   47 YIYSRYGNPTVRALEQRLAALE--------GGEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRF  118 (386)
T ss_dssp             CSBTTTC-HHHHHHHHHHHHHH--------T-SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHT
T ss_pred             cceeccccccHHHHHHHHHHhh--------cccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhccc
Confidence            34544  345577888888876        34789999999999999999999999999999999998765555  2247


Q ss_pred             CceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcC-cEEeecccccccccCCC
Q 038416          120 NLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLG-IIVIADEVYNHLAFGST  198 (387)
Q Consensus       120 g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~-~~li~D~~~~~~~~~~~  198 (387)
                      |+++..++.       -|++++++++++++++|++..|.||+..+.+   +++++++|+++| +++|+|+.++...    
T Consensus       119 gv~v~~~d~-------~d~~~l~~~l~~~t~~v~~EspsNP~l~v~D---l~~i~~~a~~~g~~~~vVDnT~atp~----  184 (386)
T PF01053_consen  119 GVEVTFVDP-------TDLEALEAALRPNTKLVFLESPSNPTLEVPD---LEAIAKLAKEHGDILVVVDNTFATPY----  184 (386)
T ss_dssp             TSEEEEEST-------TSHHHHHHHHCTTEEEEEEESSBTTTTB------HHHHHHHHHHTTT-EEEEECTTTHTT----
T ss_pred             CcEEEEeCc-------hhHHHHHhhccccceEEEEEcCCCccccccc---HHHHHHHHHHhCCceEEeecccccee----
Confidence            888877753       3789999999999999999999999988855   999999999998 9999999998532    


Q ss_pred             CCccccccCCCccEEEEecCcccccccc-cceEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhcc
Q 038416          199 PYVPMGVFGSIVPVITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETN  276 (387)
Q Consensus       199 ~~~~~~~~~~~~~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~  276 (387)
                      ...++. +..+   +++.|.+|.++..+ .=.|.+++++      ++++.++++.... .+...++...+.+..-++.  
T Consensus       185 ~~~pL~-~GaD---ivv~S~TKyl~Ghsdv~~G~vv~~~------~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~T--  252 (386)
T PF01053_consen  185 NQNPLE-LGAD---IVVHSATKYLSGHSDVMGGAVVVNG------SSELYDRLREFRRLLGATLSPFDAWLLLRGLRT--  252 (386)
T ss_dssp             TC-GGG-GT-S---EEEEETTTTTTTSSSE-EEEEEESS------HHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTT--
T ss_pred             eeccCc-CCce---EEEeeccccccCCcceeeEEEEECc------hhhhhhhhcchhhhcCccchHHHHHHHhcCCCc--
Confidence            112222 2233   89999999975444 3356666543      1256666665543 4556666666666555554  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC----------------CceEEEEEecCcccccCCCcHHHHHHHHHH
Q 038416          277 EAFFAKIIGLLKETADICYERIKEIPCITCPVKP----------------QGAMFVMVKLNVSMLEDIGDDLEFCLKLAK  340 (387)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~  340 (387)
                         +.-+.++..++++.+.+.|++.|.+..+.+|                ..|.++.+.+..        ..+.+..++.
T Consensus       253 ---l~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~--------~~~~~~~f~~  321 (386)
T PF01053_consen  253 ---LPLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKG--------GEEAARRFLD  321 (386)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESS--------HHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEecc--------chhhhHhHHh
Confidence               7788899999999999999998776655555                233466666753        2223333333


Q ss_pred             hcCeEEE---cCCcc----------------------CC-CCeEEEEeeCChHhHHHHHHHHHHHHH
Q 038416          341 EESVIIL---PGRTV----------------------GM-KNWLRIAFAAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       341 ~~gi~v~---~g~~~----------------------~~-~~~~Ri~~~~~~e~~~~~~~~l~~~~~  381 (387)
                      .-.+...   -|...                      +. ++.+|+|++.  |+.+.+++.|.++++
T Consensus       322 ~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGl--Ed~~dLi~Dl~~AL~  386 (386)
T PF01053_consen  322 ALKLFSIAPSLGGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVGL--EDPDDLIADLEQALE  386 (386)
T ss_dssp             H-SSSEESSS-SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--S--S-HHHHHHHHHHHHH
T ss_pred             hhhhHhhhhhcCCcccccccccchhhccCChhhhhccCCCCCeeEEEecc--CCHHHHHHHHHHhcC
Confidence            3333211   11110                      00 3579999998  778888888888774

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.89  E-value=5.1e-21  Score=179.56  Aligned_cols=343  Identities=15%  Similarity=0.055  Sum_probs=207.5

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      .+.+.+-|.+...-++ .+|.+.+++.+++.... ..+.......+|.+.+++.+    .   ..+.+++++|+++|++.
T Consensus        51 ~~lD~~~g~~~~~lGh-~~p~i~~a~~~~~~~~~-~~~~~~~~~~~la~~L~~~~----~---~~~~v~~~~sGseA~e~  121 (426)
T PRK00062         51 EYIDYVGSWGPMILGH-AHPEVVEAVIEAAEKGL-SFGAPTELEVELAELVIELV----P---SIEMVRMVNSGTEATMS  121 (426)
T ss_pred             EEEEcccchhhhhcCC-CCHHHHHHHHHHHHhCC-cCCCCCHHHHHHHHHHHHhC----C---CCCEEEEecCHHHHHHH
Confidence            4555555544233233 78899999999998643 22333333445555555443    1   35689999999999999


Q ss_pred             HHHhhcC--CCCeEEEcCCCCcchHHHhhccCC--------Ccee---eeeccCC--CCCccCChhhHHHhhcc---Cce
Q 038416           89 SLSVLAR--PGANILIPRPGYPLYEIHAAGSNN--------NLEA---RHYDLLP--EKRWEVDLDGVEALADE---NTV  150 (387)
Q Consensus        89 ~~~~l~~--~g~~vl~~~p~~~~~~~~~~~~~~--------g~~~---~~~~~~~--~~~~~~~~~~l~~~~~~---~~~  150 (387)
                      +++....  .+++|+..+++|+++...+.  ..        +...   ...+..+  ..-..-|++.+++.++.   ++.
T Consensus       122 Aik~a~~~~g~~~ii~~~~~yHG~t~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~a  199 (426)
T PRK00062        122 AIRLARGYTGRDKIIKFEGCYHGHADSLL--VKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEYGDEIA  199 (426)
T ss_pred             HHHHHHHHhCCCeEEEEcCccCCchhhhh--hccCccccccCCCCCCCCCcccccceEEcCCCCHHHHHHHHHhCCCcEE
Confidence            9998542  25789999999998753332  11        1000   0000000  00001267888887743   344


Q ss_pred             EEEEeCCCCCccccCC-HHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccce
Q 038416          151 AIVIINPGNPCGNVFS-YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRL  229 (387)
Q Consensus       151 ~v~l~~p~nptG~~~~-~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~  229 (387)
                      +|++......+|...+ .+++++|.++|++||+++|+||+|.++..++..........++     +.+++|.++ +|+++
T Consensus       200 aiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~~~~~~~~~~~pD-----i~~~gK~l~-~G~p~  273 (426)
T PRK00062        200 AVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVALGGAQGYYGVTPD-----LTTLGKIIG-GGLPV  273 (426)
T ss_pred             EEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCCccHHHHhCCCcc-----hHhhhhHhh-CCCcc
Confidence            5555434556888765 7789999999999999999999999874422111111112122     468999986 78999


Q ss_pred             EEEEeeCCCCcccchhHHHHHHhh---hh-ccCCcchHHHHHHHHHhhhccH-HHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 038416          230 GWLVTSDPNGILQNSGFVDSIKGC---LN-AASHPVTFIQAAVPRIVDETNE-AFFAKIIGLLKETADICYERIKEIPCI  304 (387)
Q Consensus       230 G~i~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~  304 (387)
                      |++++++        ++.+.+...   .. .+++.+++.++++.+.|+...+ +..++..+.....++.+.+..++++ +
T Consensus       274 ga~~~~~--------~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~  344 (426)
T PRK00062        274 GAFGGRR--------EIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGLKEAAKKAG-I  344 (426)
T ss_pred             eeeeEHH--------HHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcC-C
Confidence            9998875        677777422   12 3456788888888888775433 2334444444444444444444453 3


Q ss_pred             CCCCCCCceEEEEEecCccccc--------CCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHH
Q 038416          305 TCPVKPQGAMFVMVKLNVSMLE--------DIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERI  376 (387)
Q Consensus       305 ~~~~~~~~g~~~~~~~~~~~~~--------~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l  376 (387)
                      ... ....|.++-+.+......        +......+...+ .++||.+.|..    .+.+++++..++++++++++.|
T Consensus       345 ~~~-vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~Gv~v~~~~----~~~~~~~~~~t~~ei~~~~~~l  418 (426)
T PRK00062        345 PLT-VNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAM-LDEGVYLAPSQ----FEAGFVSAAHTDEDIEKTLEAA  418 (426)
T ss_pred             ceE-EEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHH-HHCCeEeecCC----cCceeeeccCCHHHHHHHHHHH
Confidence            311 223354555554321100        000113455554 56799998753    2457788888999999999999


Q ss_pred             HHHHHHh
Q 038416          377 KAFCQRH  383 (387)
Q Consensus       377 ~~~~~~~  383 (387)
                      .++++++
T Consensus       419 ~~~l~~~  425 (426)
T PRK00062        419 RKAFAAL  425 (426)
T ss_pred             HHHHHhh
Confidence            9998764

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.89  E-value=4.6e-20  Score=172.31  Aligned_cols=324  Identities=15%  Similarity=0.058  Sum_probs=197.2

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCC------CCCCcHHHHH----HHHHHHhhcCCCCCCCCCE-EEcCChHHHHHHHHHhh
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYS------PTLGVPSARR----GIADYLNRDLPYKLSPEDV-YLTLGCSQAIEISLSVL   93 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~------~~~~~~~lr~----~ia~~~~~~~~~~~~~~~i-~~~~g~~~a~~~~~~~l   93 (387)
                      .++|.+++++...+.+....+++      ......+|++    .++++++        .+.+ +.++||+.|+..++.++
T Consensus        39 ~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g--------~~~alv~~~SG~~A~~~~l~al  110 (416)
T PRK13034         39 FTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFG--------CDYANVQPHSGSQANGAVYLAL  110 (416)
T ss_pred             CCCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhC--------CCceEEecCCcHHHHHHHHHHh
Confidence            36999999999986332111111      1234567777    7777772        2355 45688899999999999


Q ss_pred             cCCCCeEEEcCCCCcch-HHHhhccCCCcee--eeeccCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCccccCCHHH
Q 038416           94 ARPGANILIPRPGYPLY-EIHAAGSNNNLEA--RHYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCGNVFSYQH  169 (387)
Q Consensus        94 ~~~g~~vl~~~p~~~~~-~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~  169 (387)
                      +++||+|+++..+|.+. ...++.+..+...  ..++.++. ++.+|++++++.++. ++++|++..+.  .|...   +
T Consensus       111 ~~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~~~le~~l~~~~~klVi~~~~~--~g~~~---d  184 (416)
T PRK13034        111 LKPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRL-TGLIDYDEVEELAKEHKPKLIIAGFSA--YPREL---D  184 (416)
T ss_pred             cCCCCEEEEcCccceeeeecCCcceeccceeeeEEcccccc-cCCcCHHHHHHHHhhcCCeEEEECCCc--ccccc---C
Confidence            99999999999999773 2222200112211  23333222 346899999988743 57777765554  35554   4


Q ss_pred             HHHHHHHHHhcCcEEeecccccccccC-CCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHH
Q 038416          170 LQKIARTARNLGIIVIADEVYNHLAFG-STPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD  248 (387)
Q Consensus       170 ~~~l~~~~~~~~~~li~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~  248 (387)
                      +.+|.++|+++|+++|+|++|+...+. |....++   .  .-.++++|++|+++  |...|++++++       +++.+
T Consensus       185 l~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~---~--~~Di~~~s~~K~l~--g~~GG~v~~~~-------~~~~~  250 (416)
T PRK13034        185 FARFREIADEVGALLMVDMAHIAGLVAAGEHPNPF---P--HAHVVTTTTHKTLR--GPRGGMILTND-------EEIAK  250 (416)
T ss_pred             HHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCC---C--CceEEEEeCcccCC--CCCCeEEEECc-------HHHHH
Confidence            888888899999999999999864432 2111122   1  13488999999963  22247777654       13444


Q ss_pred             HHHhhhhcc--CCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccccc
Q 038416          249 SIKGCLNAA--SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE  326 (387)
Q Consensus       249 ~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~  326 (387)
                      .++.....+  ..+.++...++...+....+....+..+++.++.+++++.|+++ |+.+.........+.+.+....  
T Consensus       251 ~~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~-G~~~~~~~~~t~i~~v~~~~~~--  327 (416)
T PRK13034        251 KINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKER-GYDLVSGGTDNHLLLVDLRPKG--  327 (416)
T ss_pred             HHHhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCCCCCcEEEEEcCCCC--
Confidence            444322211  12333333333323332211223456788999999999999888 7774321134556666664321  


Q ss_pred             CCCcHHHHHHHHHHhcCeEEEcCC------ccCCCCeEEEEee------CChHhHHHHHHHHHHHHHH
Q 038416          327 DIGDDLEFCLKLAKEESVIILPGR------TVGMKNWLRIAFA------AEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       327 ~~~~~~~~~~~ll~~~gi~v~~g~------~~~~~~~~Ri~~~------~~~e~~~~~~~~l~~~~~~  382 (387)
                         .........+++.||.+.+-.      ....+..+|++++      .++++++++++.|.+++.+
T Consensus       328 ---~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~~  392 (416)
T PRK13034        328 ---LSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLDD  392 (416)
T ss_pred             ---CCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence               133444445577899987521      1112457999972      3689999999999988764

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.89  E-value=6.3e-20  Score=169.79  Aligned_cols=313  Identities=17%  Similarity=0.205  Sum_probs=195.5

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh-cCCCCeEEEcC
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL-ARPGANILIPR  104 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~g~~vl~~~  104 (387)
                      ..+.-.+++.+.+.....  |+.    ..+++.+++++.+.+    +.+++++++|+++|+..++.++ +++||+|+++.
T Consensus         9 ~~~~~~~~~~~~l~~~~~--~g~----~~~~~~~e~~la~~~----g~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~   78 (375)
T PRK11706          9 VVGTELDYIQQAMSSGKL--CGD----GGFTRRCQQWLEQRF----GSAKVLLTPSCTAALEMAALLLDIQPGDEVIMPS   78 (375)
T ss_pred             CCHHHHHHHHHHHHcCCc--cCC----CHHHHHHHHHHHHHh----CCCeEEEECCHHHHHHHHHHHhCCCCCCEEEECC
Confidence            344557778887765432  222    244455555444433    3368999999999999887766 68999999999


Q ss_pred             CCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEE
Q 038416          105 PGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIV  184 (387)
Q Consensus       105 p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~l  184 (387)
                      |+|..+...+.  ..|.+++.+++++ +++.+|++++++++++++++|++++   ++|...+   +++|.++|+++|+++
T Consensus        79 ~t~~~~~~~~~--~~G~~~v~~d~d~-~~~~~d~~~le~~i~~~tk~i~~~~---~~G~~~~---~~~i~~la~~~~i~v  149 (375)
T PRK11706         79 YTFVSTANAFV--LRGAKIVFVDIRP-DTMNIDETLIEAAITPKTRAIVPVH---YAGVACE---MDTIMALAKKHNLFV  149 (375)
T ss_pred             CCcHHHHHHHH--HcCCEEEEEecCC-CcCCcCHHHHHHhcCCCCeEEEEeC---CCCCccC---HHHHHHHHHHcCCEE
Confidence            99999999999  9999999998864 3467899999999988899988764   5887754   788999999999999


Q ss_pred             eecccccccc-cCCCCCccccccCCCccEEEEecCc--ccccccccceEEEEeeCCCCcccchhHHHHHHhhhhcc----
Q 038416          185 IADEVYNHLA-FGSTPYVPMGVFGSIVPVITLGSIS--KRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAA----  257 (387)
Q Consensus       185 i~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~s~s--K~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~----  257 (387)
                      |+|++|+.+. +.+.+.   ..+.    .+.+.||+  |.++ +|.+.++++.++        ++.++++..+..+    
T Consensus       150 IeD~a~a~g~~~~~~~~---g~~~----~~~~~Sf~~~K~l~-~g~gG~~~~~~~--------~~~~~~~~~~~~g~~~~  213 (375)
T PRK11706        150 VEDAAQGVMSTYKGRAL---GTIG----HIGCFSFHETKNYT-AGEGGALLINDP--------ALIERAEIIREKGTNRS  213 (375)
T ss_pred             EEECccccccccCCeee---ecCc----CEEEEeCCCCcccc-ccCCeEEEECCH--------HHHHHHHHHHHcCCCcc
Confidence            9999999755 333322   2221    14445655  9864 466655555433        5666665543211    


Q ss_pred             --------------CCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCC---CCCCCCCCc----eEEE
Q 038416          258 --------------SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPC---ITCPVKPQG----AMFV  316 (387)
Q Consensus       258 --------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~----g~~~  316 (387)
                                    .+.+.......+++.. ..-..+++..++.+++.+.+.+.|.++++   +.....+.+    ..++
T Consensus       214 ~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~-~ql~~l~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~  292 (375)
T PRK11706        214 QFFRGQVDKYTWVDIGSSYLPSELQAAYLW-AQLEAADRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMF  292 (375)
T ss_pred             hhhccCCCcceeeecccccCcCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEE
Confidence                          0111111111111111 11133566666677777777788877652   331212221    2244


Q ss_pred             EEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCcc----------C-----C-------CCeEEEEe--eCChHhHHHH
Q 038416          317 MVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTV----------G-----M-------KNWLRIAF--AAEPATLEDG  372 (387)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~----------~-----~-------~~~~Ri~~--~~~~e~~~~~  372 (387)
                      ++.++..     .+..++...| +++||.+......          +     .       ...+-+-+  ..++++++..
T Consensus       293 ~~~~~~~-----~~r~~l~~~L-~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i  366 (375)
T PRK11706        293 YIKLRDL-----EDRSALINFL-KEAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTV  366 (375)
T ss_pred             EEEECCc-----CCHHHHHHHH-HHCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHH
Confidence            5555421     1345666655 6679987533200          0     0       12233333  2478899999


Q ss_pred             HHHHHHHH
Q 038416          373 LERIKAFC  380 (387)
Q Consensus       373 ~~~l~~~~  380 (387)
                      ++.|++++
T Consensus       367 ~~~i~~~~  374 (375)
T PRK11706        367 IDTILEFF  374 (375)
T ss_pred             HHHHHHHh
Confidence            88887754

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.89  E-value=7.6e-21  Score=158.80  Aligned_cols=325  Identities=16%  Similarity=0.168  Sum_probs=214.9

Q ss_pred             CCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc-C
Q 038416           17 RPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA-R   95 (387)
Q Consensus        17 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-~   95 (387)
                      +.+++.-.-++++++++|.++...+..  |+......+|++.+|+++        .++.-++++++|.++.++++.-+ +
T Consensus        25 DLRSDTvT~PTdeMr~am~eA~vgDdV--yGeD~tt~rLE~~vA~l~--------GKEAgLFv~SGTmgNllaIm~Hc~~   94 (384)
T KOG1368|consen   25 DLRSDTVTVPTDEMRRAMAEASVGDDV--YGEDPTTNRLEQRVAELF--------GKEAGLFVPSGTMGNLLAIMVHCHQ   94 (384)
T ss_pred             ccccccccCChHHHHHHHhhcccCccc--ccCCccHHHHHHHHHHHh--------CccceeeecccccccHHHHHHHhcC
Confidence            555565566889999999999988766  555557799999999998        34555566666667777776655 6


Q ss_pred             CCCeEEEcCCCCc-chHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc--------CceEEEEeCCCCCcc-ccC
Q 038416           96 PGANILIPRPGYP-LYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE--------NTVAIVIINPGNPCG-NVF  165 (387)
Q Consensus        96 ~g~~vl~~~p~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~v~l~~p~nptG-~~~  165 (387)
                      +|..|++.+.+|. .|.....-...|  +...++.++++..+++++++++++.        -|++|.+.|-+|.+| .++
T Consensus        95 rg~eii~gd~~HI~~~E~gg~s~l~g--v~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vl  172 (384)
T KOG1368|consen   95 RGSEIIVGDRAHIHRYEQGGISQLAG--VHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVL  172 (384)
T ss_pred             CCceEEeccchheeehhccChhhhcc--ceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEe
Confidence            8999999988885 333222200233  4444555677778999999999863        378999999976555 999


Q ss_pred             CHHHHHHHHHHHHhcCcEEeecccccccc--cCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccc
Q 038416          166 SYQHLQKIARTARNLGIIVIADEVYNHLA--FGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQN  243 (387)
Q Consensus       166 ~~~~~~~l~~~~~~~~~~li~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~  243 (387)
                      |.+++.++.++|+++|+.++.|.+--.-.  -.|.   ++..+......+.+. +||.+|.|   +|.++....      
T Consensus       173 Ple~~~~v~~lak~~glkLH~DGARi~NAavasgV---~vk~i~~~fDSVsiC-LSKglgAP---VGSViVG~k------  239 (384)
T KOG1368|consen  173 PLEELDRVKALAKRHGLKLHMDGARIFNAAVASGV---PVKKICSAFDSVSIC-LSKGLGAP---VGSVIVGSK------  239 (384)
T ss_pred             eHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCC---CHHHHHHhhhhhhhh-hhccCCCC---cccEEEccH------
Confidence            99999999999999999999998866311  1122   222222212224444 89987555   676655431      


Q ss_pred             hhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC-CceEEEEEecC
Q 038416          244 SGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKP-QGAMFVMVKLN  321 (387)
Q Consensus       244 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~~~~~~~~  321 (387)
                       +++++.+..+ ..+++.-..+..++++.+.-  ++.... .+.-.+++..+.+.++..+++.+- .| ...+++.+.+.
T Consensus       240 -~FI~kA~~~RKalGGGmRQsGvLaaaaLval--~~~~~~-L~~dHk~A~~lAe~~~~~~~i~v~-v~a~etNiv~~~l~  314 (384)
T KOG1368|consen  240 -DFIDKARHFRKALGGGMRQSGVLAAAALVAL--DENVPL-LRADHKRAKELAEYINTPEEIRVE-VPAVETNIVNMVLC  314 (384)
T ss_pred             -HHHHHHHHHHHHhcCchhHHHHHHHHHHHHh--hcchHH-HHHHHHHHHHHHHHhccccceeee-cchhhcceeeeecc
Confidence             6777776554 34444444444444443332  122232 222233455555666666667733 44 56777776665


Q ss_pred             cccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHH
Q 038416          322 VSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFC  380 (387)
Q Consensus       322 ~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~  380 (387)
                      .+++    +..++...+ ++.||.+.+|.    ...+||.+.  .++++++.++..+.+.+
T Consensus       315 q~~~----~~~~l~~~~-~k~gi~lm~~~----s~r~Rivlh~Qvt~~~ve~~~~~~~k~~  366 (384)
T KOG1368|consen  315 QARL----TAEELCKFL-EKNGILLMGGA----SRRIRIVLHHQVTDEDVEYVKSVLSKKF  366 (384)
T ss_pred             cccC----CHHHHHHHH-HHCCeEEeecc----ccceEEEEEEecCHHHHHHHHHHHHHHH
Confidence            5443    566777766 77899999985    355899995  48999999999985433

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.89  E-value=6.2e-20  Score=172.22  Aligned_cols=332  Identities=16%  Similarity=0.134  Sum_probs=201.8

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc--CCCCeEEEc
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA--RPGANILIP  103 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~g~~vl~~  103 (387)
                      .+|.+.+++++++....  +++......+.+.++++.+.+..+  ..-+.++++++|++|++.+++...  ....+|+..
T Consensus        58 ~~p~v~~Ai~~ql~~~~--~~~~~~~~~~~~~~la~~L~~~~p--~~~~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~  133 (443)
T PRK08360         58 NNPRVVKAIKEQTDKLI--HYTPIYGFPVEPLLLAEKLIEIAP--GDNPKVSFGLSGSDANDGAIKFARAYTKRRKILSY  133 (443)
T ss_pred             CCHHHHHHHHHHHHhcc--CccccccCcHHHHHHHHHHHHhCC--CCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEE
Confidence            58889999999987632  222222223445566666654332  223589999999999999998753  223678888


Q ss_pred             CCCCcchHHHhhccCCCc------------eeeeeccCCCC--Ccc--------CChhhHHHhhc-----cCceEEEEeC
Q 038416          104 RPGYPLYEIHAAGSNNNL------------EARHYDLLPEK--RWE--------VDLDGVEALAD-----ENTVAIVIIN  156 (387)
Q Consensus       104 ~p~~~~~~~~~~~~~~g~------------~~~~~~~~~~~--~~~--------~~~~~l~~~~~-----~~~~~v~l~~  156 (387)
                      ..+|++....+. +..+.            .+..++.+...  .+.        -+++.+++.++     +++.++++..
T Consensus       134 ~~~yHG~t~~a~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP  212 (443)
T PRK08360        134 LRSYYGSTYGAM-SLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEP  212 (443)
T ss_pred             eCCcCCcCHHHH-HhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEEECC
Confidence            888887643222 01111            12222221100  000        12344555553     2344454443


Q ss_pred             CCCCccccCC-HHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEee
Q 038416          157 PGNPCGNVFS-YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTS  235 (387)
Q Consensus       157 p~nptG~~~~-~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~  235 (387)
                      .+||+|..++ .+.++++.++|++||+++|+||+|.++.+.|..+.. ..++...++   .++||.++ +|+|+|+++++
T Consensus       213 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~-~~~~~~pDi---itlsK~l~-~G~pigav~~~  287 (443)
T PRK08360        213 IQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAI-EHFGVEPDI---ITLGKPLG-GGLPISATIGR  287 (443)
T ss_pred             ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhh-hhcCCCCCE---EEeccccc-CCceeEEEEEc
Confidence            3799999876 557999999999999999999999998776643221 112222223   26799987 88999999997


Q ss_pred             CCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc----CCCCCCCCCC
Q 038416          236 DPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE----IPCITCPVKP  310 (387)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~  310 (387)
                      +        ++.+.+.... ..+.+.+++.+.++.+.|+...+..   ..++++++.+++++.|++    .|.+..  ..
T Consensus       288 ~--------~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~v~~--vr  354 (443)
T PRK08360        288 A--------EIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEEKN---LLKRAEKLGNYTKKRLEEMKKKHELIGD--VR  354 (443)
T ss_pred             H--------HHHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHHHHhCCCeee--ee
Confidence            5        6777775442 3456778888888888887643322   233444444444444433    432221  22


Q ss_pred             CceEEEEEecCccc---ccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHHHHhhh
Q 038416          311 QGAMFVMVKLNVSM---LEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       311 ~~g~~~~~~~~~~~---~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      .-|.++-+.+....   .+.......+... +.++|+.+.+..    .+.+|+++  .+++++++++++++.++++++.+
T Consensus       355 g~Gl~~gie~~~~~~~~~~~~~~~~~~~~~-l~~~Gi~~~~~~----~~~lr~~P~l~~t~~~id~~~~~l~~~l~~~~~  429 (443)
T PRK08360        355 GIGLMIGVDLVKDRETKERAYEEAAKVVWR-AWELGLIVTFFS----GNVLRIQPPLTIEKEVLDEGLDILEEAIEDVEE  429 (443)
T ss_pred             ccceEEEEEEecCCcccCccHHHHHHHHHH-HHHCCeEEeecC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            34556665553211   1111112344444 466799886532    47899977  46899999999999999987653

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.89  E-value=4.9e-20  Score=173.59  Aligned_cols=335  Identities=17%  Similarity=0.116  Sum_probs=202.6

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc--CCCCeEEEc
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA--RPGANILIP  103 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~g~~vl~~  103 (387)
                      .+|.+.+++++++..........  -..+....+++.+.+..+  -..+.++++++|++|++.+++...  ....+|+..
T Consensus        60 ~~p~v~~a~~~q~~~~~~~~~~~--~~~~~~~~la~~L~~~~~--~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~  135 (433)
T PRK08117         60 RHPKVVQAIKEQADKLMHGPSGV--IYYESILKLAEELAEITP--GGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISF  135 (433)
T ss_pred             CCHHHHHHHHHHHHhccCccccc--cCCHHHHHHHHHHHHhCC--CCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEE
Confidence            67889999999887531111110  112334444444443321  234689999999999999998743  123678888


Q ss_pred             CCCCcchHHHhhccCCC--c-----------eeeeeccCCCC--Ccc--------CChhhHHHhhc----cCceEEEEeC
Q 038416          104 RPGYPLYEIHAAGSNNN--L-----------EARHYDLLPEK--RWE--------VDLDGVEALAD----ENTVAIVIIN  156 (387)
Q Consensus       104 ~p~~~~~~~~~~~~~~g--~-----------~~~~~~~~~~~--~~~--------~~~~~l~~~~~----~~~~~v~l~~  156 (387)
                      ..+|++...... +..+  .           .+..+|.+...  ...        -+++.+++.++    .+..+.++..
T Consensus       136 ~~~yHG~t~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~E  214 (433)
T PRK08117        136 TGCFHGRTLGAL-SVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIE  214 (433)
T ss_pred             CCCcCCcCHHHH-hhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEEC
Confidence            888887543321 0111  0           11222221100  000        13455666553    2344556666


Q ss_pred             C-CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEe
Q 038416          157 P-GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVT  234 (387)
Q Consensus       157 p-~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~  234 (387)
                      | +...|.. .+++.++++.++|++||+++|+||+|.+|...|..... ..++.   ...+.+++|.++ +|+++|++++
T Consensus       215 pi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~-~~~gv---~pDi~t~sK~lg-~G~pigav~~  289 (433)
T PRK08117        215 PVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAA-QTFGV---VPDIMTIAKGIA-SGLPLSAVVA  289 (433)
T ss_pred             CeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhH-hhcCC---CCCEeehhhhcc-CCCcceeEEE
Confidence            6 5666775 57788999999999999999999999998766653321 12221   123568999986 7899999998


Q ss_pred             eCCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc----CCCCCCCCC
Q 038416          235 SDPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE----IPCITCPVK  309 (387)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~  309 (387)
                      ++        ++.+.+.... ..+++.+++++.++.+.|+...+..   ..++++++.+++++.|++    ++.+.  ..
T Consensus       290 ~~--------~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~~--~v  356 (433)
T PRK08117        290 SK--------ELMEQWPLGSHGTTFGGNPVACAAALATLEVIKEEK---LLDNANEMGAYALERLEVLKEKHPVIG--DV  356 (433)
T ss_pred             cH--------HHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHhcCCcee--ee
Confidence            75        6766664332 2456778889998888887543322   333444444555555544    33222  13


Q ss_pred             CCceEEEEEecCcccc-cCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHHHHhhhc
Q 038416          310 PQGAMFVMVKLNVSML-EDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFCQRHAKK  386 (387)
Q Consensus       310 ~~~g~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~~~~  386 (387)
                      +..|.++.+.+..... +.. .....+...+.++||.+.+...  ..+.+|+++  .++++++++++++|.++++++.+|
T Consensus       357 rg~Gl~~gi~~~~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~g~--~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~~~  433 (433)
T PRK08117        357 RGIGLMIGIEIVDPDGEPDG-DAVEKILDKCLEKGLLFYLCGN--AGNVLRMIPPLTVTKEEIDEGLDILDEALTEYEAK  433 (433)
T ss_pred             ecCCcEEEEEEecCCCCcch-HHHHHHHHHHHHCCCEEeecCC--CCCEEEEeCCccCCHHHHHHHHHHHHHHHHHHhcC
Confidence            4456666666643210 000 1123333445677998876321  247899996  578999999999999999887654

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.88  E-value=4.3e-20  Score=171.56  Aligned_cols=340  Identities=15%  Similarity=0.034  Sum_probs=221.5

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEE--cCChHHHHHHHHHhhcC------
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYL--TLGCSQAIEISLSVLAR------   95 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~--~~g~~~a~~~~~~~l~~------   95 (387)
                      .++.|.+.+.+...+... ..++.......++++.+.+|+.+.++.+-..+++..  |+|+|+++..++.+...      
T Consensus        51 t~~~p~~~~~~~~~l~~~-~~np~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~  129 (431)
T TIGR01788        51 TWMEPEARKLMDETINKN-MIDKDEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRM  129 (431)
T ss_pred             CCCCHHHHHHHHHHHhcC-CCCcccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHH
Confidence            356777899998888643 222222233447777777777776664311134544  89999999998866431      


Q ss_pred             --CC-----CeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           96 --PG-----ANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        96 --~g-----~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                        .|     ..|+++...|.++...++  ..|+++..+++++ +++.+|+++|++++++++.+|+++..+|.||.+.|  
T Consensus       130 ~~~g~~~~~~~ii~s~~~H~sv~ka~~--~lg~~v~~i~~d~-~~~~vd~~~L~~~i~~~t~lV~~t~g~t~tG~idp--  204 (431)
T TIGR01788       130 EAAGKPTDKPNLVMGSNVQVCWEKFAR--YFDVELREVPMDP-GRYVIDPEQVVEAVDENTIGVVCILGTTYTGEYED--  204 (431)
T ss_pred             HhcCCCCCCcEEEEcCcchHHHHHHHH--HcCceeEEEecCC-CceeeCHHHHHHHHhhCCeEEEEEeCCCCCcccCC--
Confidence              11     378999999999999999  8999999999865 34578999999999999999999999999999977  


Q ss_pred             HHHHHHHHHHhc------CcEEeeccccccccc---CCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCC
Q 038416          169 HLQKIARTARNL------GIIVIADEVYNHLAF---GSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNG  239 (387)
Q Consensus       169 ~~~~l~~~~~~~------~~~li~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~  239 (387)
                       +++|+++|+++      |+++++|.+|+++..   .+.....+.   ...-..+..|.+|++ .....+|+++.+++..
T Consensus       205 -i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~---~~~~DSis~s~HK~~-~~P~g~G~l~~r~~~~  279 (431)
T TIGR01788       205 -VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR---LPRVKSINVSGHKYG-LVYPGVGWVIWRDEEA  279 (431)
T ss_pred             -HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC---CCCceEEEECchhcc-CCCCCcEEEEEeChHH
Confidence             88888888899      999999999996431   122111221   111124567899984 3334489999876321


Q ss_pred             cccchhHHHHHHh---hh-----hccCCcchHH--HHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 038416          240 ILQNSGFVDSIKG---CL-----NAASHPVTFI--QAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVK  309 (387)
Q Consensus       240 ~~~~~~~~~~~~~---~~-----~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  309 (387)
                            +.+.+..   +.     ..+...+...  ....-..|.......+.++.++..++++++.+.|+++|+++++..
T Consensus       280 ------l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~  353 (431)
T TIGR01788       280 ------LPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISD  353 (431)
T ss_pred             ------cchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeC
Confidence                  1111110   10     0011111111  111222233344577888999999999999999999988886633


Q ss_pred             -CCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCc---cCCCCeEEEEe--eCChHhHHHHHHHHHHHHHHh
Q 038416          310 -PQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRT---VGMKNWLRIAF--AAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       310 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~---~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~  383 (387)
                       |..+ .+.+++......+ .+..++.+.| .++|+.+..-..   .....++|+++  ..+.+.++..++.|++++..+
T Consensus       354 ~~~~~-iV~Fr~~~~~~~~-~~~~~l~~~L-~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (431)
T TIGR01788       354 GSGIP-LVAFKLKDDADPG-YTLYDLSHRL-RERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEAALAYL  430 (431)
T ss_pred             CCCce-EEEEEeCCCCCCC-cCHHHHHHHH-HHCCCcccCCCCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence             3433 4444554211001 1344555555 667986533221   11234689998  457889999999999988765

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.88  E-value=6.8e-20  Score=171.19  Aligned_cols=348  Identities=16%  Similarity=0.109  Sum_probs=208.2

Q ss_pred             cccCCCCCCCCCCCCCC-CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCC-CCCEEEcCChHHHH
Q 038416            9 TRHSPWPRRPLGVSLLS-DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLS-PEDVYLTLGCSQAI   86 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~-~~~i~~~~g~~~a~   86 (387)
                      .+++..-|.....  ++ .+|.+.+++++++.....  +.......+.+..+++.+.+..+  .. .+.+++++++++|+
T Consensus        41 ~ylD~~~g~~~~~--lGh~~p~v~~ai~~ql~~l~~--~~~~~~~~~~~~~la~~l~~~~p--~~~~~~v~f~~SGseA~  114 (425)
T PRK07495         41 RYIDFAAGIAVVN--TGHRHPRVIAAVKAQLDRFTH--TCHQVVPYENYVRLAERLNALVP--GDFAKKTIFVTTGAEAV  114 (425)
T ss_pred             EEEEccccHHhhc--cCCCCHHHHHHHHHHHhhccC--cccCccCCHHHHHHHHHHHHhCC--CCCCCEEEECCchHHHH
Confidence            4555544432122  23 678899999999875321  11111112334445555544322  11 25899999999999


Q ss_pred             HHHHHhhc--CCCCeEEEcCCCCcchHHHhhccCCCc-------------eeeeeccCCCCCccCC----hhhHHHhhc-
Q 038416           87 EISLSVLA--RPGANILIPRPGYPLYEIHAAGSNNNL-------------EARHYDLLPEKRWEVD----LDGVEALAD-  146 (387)
Q Consensus        87 ~~~~~~l~--~~g~~vl~~~p~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~~----~~~l~~~~~-  146 (387)
                      +.+++...  ....+|+....+|++...... +..+.             .+..+|.+... .+.+    ++++++.+. 
T Consensus       115 e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~l~~~~~~  192 (425)
T PRK07495        115 ENAVKIARAATGRSAVIAFGGGFHGRTFMGM-SLTGKVVPYKVGFGAMMPDVYHVPFPVEL-HGVSVEQSLAALDKLFKA  192 (425)
T ss_pred             HHHHHHHHHhhCCCeEEEECCCcCCccHHHh-hhcCCCcccccCCCCCCCCeEEecCCccc-ccccHHHHHHHHHHHHHh
Confidence            99998753  223689999999988643322 01110             12223332111 1122    344566553 


Q ss_pred             ---cCceEEEEeCC-CCCccc-cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCccc
Q 038416          147 ---ENTVAIVIINP-GNPCGN-VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKR  221 (387)
Q Consensus       147 ---~~~~~v~l~~p-~nptG~-~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~  221 (387)
                         ++..+.++..| +..+|. .+|++.+++|.++|++||+++|+||++.++...|..+ .+   ...+....+.+++|.
T Consensus       193 ~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~-a~---~~~gv~pDi~tlsK~  268 (425)
T PRK07495        193 DVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLF-AM---EHHEVAADLTTMAKG  268 (425)
T ss_pred             ccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCce-ee---cccCCCCCEEeehhh
Confidence               23344555556 434784 5788999999999999999999999999887666421 11   111223457789999


Q ss_pred             ccccccceEEEEeeCCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhh-
Q 038416          222 WIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIK-  299 (387)
Q Consensus       222 ~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~-  299 (387)
                      ++ +|+|+|++++++        ++.+.+.... ..+++.+++.++++.+.++...+..+.   ++++++.+++++.|+ 
T Consensus       269 l~-~G~pigav~~~~--------~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~---~~~~~~g~~l~~~L~~  336 (425)
T PRK07495        269 LA-GGFPLAAVTGRA--------EIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEEDLC---ERANQLGNRLKQRLAS  336 (425)
T ss_pred             hc-CCccceEEEEcH--------HHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhchHH---HHHHHHHHHHHHHHHH
Confidence            75 789999999976        5666654332 346678888888777777654333222   333333333333333 


Q ss_pred             ---cCCCCCCCCCCCceEEEEEecCccc--ccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHH
Q 038416          300 ---EIPCITCPVKPQGAMFVMVKLNVSM--LEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDG  372 (387)
Q Consensus       300 ---~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~  372 (387)
                         .+|.+..+  ...|.++|+.+....  .+.. .....+...+.++|+.+.+...  .++.+|+.+  ..++++++++
T Consensus       337 l~~~~~~i~~v--rG~Gl~~~iel~~~~~~~~~~-~~~~~~~~~~~~~Gvl~~~~g~--~~~~~r~~Ppl~it~~~id~~  411 (425)
T PRK07495        337 LRETVPEIADI--RGPGFMNAVEFNDADSGLPSA-EFANRVRLKALEKGLILLTCGV--HGNVIRFLAPITIQDDVFAEA  411 (425)
T ss_pred             HHhhCCCeeee--ecCceEEEEEEecCCCCCccH-HHHHHHHHHHHHCCeEEeecCC--CCCEEEEeCCCccCHHHHHHH
Confidence               34433322  234889999884321  1100 1122333444667999876321  147899998  4689999999


Q ss_pred             HHHHHHHHHHhhh
Q 038416          373 LERIKAFCQRHAK  385 (387)
Q Consensus       373 ~~~l~~~~~~~~~  385 (387)
                      +++|.++++++..
T Consensus       412 ~~~l~~~l~~~~~  424 (425)
T PRK07495        412 LDILEASILEASA  424 (425)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987653

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.88  E-value=1.1e-19  Score=171.20  Aligned_cols=332  Identities=16%  Similarity=0.115  Sum_probs=202.0

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc--CCCCeEEEc
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA--RPGANILIP  103 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~g~~vl~~  103 (387)
                      .+|.+.+++++++.+..  ++.......+.+..+++.+.+..+. ...+.+++++++++|++.+++...  ...++|+..
T Consensus        73 ~~p~v~~ai~~q~~~~~--~~~~~~~~~~~~~~la~~l~~~~p~-~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~  149 (443)
T PRK06058         73 SAPRVVEAVREQVARFT--HTCFMVTPYEGYVAVAEQLNRLTPG-DHEKRSALFNSGAEAVENAVKIARSYTGRQAVVVF  149 (443)
T ss_pred             CCHHHHHHHHHHHHhcc--CccccccCCHHHHHHHHHHHHhCCC-CCCCEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEE
Confidence            57899999999987532  2222222345566667766554321 112578999999999999998542  223789999


Q ss_pred             CCCCcchHHHhhccCC-C--------c-----eeeeeccCCCCC----ccC--------ChhhHHHhhccCceEEEEeCC
Q 038416          104 RPGYPLYEIHAAGSNN-N--------L-----EARHYDLLPEKR----WEV--------DLDGVEALADENTVAIVIINP  157 (387)
Q Consensus       104 ~p~~~~~~~~~~~~~~-g--------~-----~~~~~~~~~~~~----~~~--------~~~~l~~~~~~~~~~v~l~~p  157 (387)
                      .++|+++.....  .. +        .     .+..++.....+    ...        ..+.+++.+.++..+.++..|
T Consensus       150 ~~~yHG~t~~al--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EP  227 (443)
T PRK06058        150 DHAYHGRTNLTM--ALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLAAVIIEP  227 (443)
T ss_pred             CCCcCcChHHHH--hhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhCCCceEEEEECC
Confidence            999998764443  21 1        1     112222111000    000        122333444334455566777


Q ss_pred             C-CCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEee
Q 038416          158 G-NPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTS  235 (387)
Q Consensus       158 ~-nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~  235 (387)
                      . ...|.. +|++.++++.++|++||+++|.||++.+|...|..+.. ..++....++   +++|.++ +|+++|+++++
T Consensus       228 i~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~-~~~gv~PDiv---~~gK~l~-~G~Pi~av~~~  302 (443)
T PRK06058        228 IQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFAC-EHEGIVPDLI---TTAKGIA-GGLPLSAVTGR  302 (443)
T ss_pred             ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHH-HhcCCCCCEE---EEccccc-CCCccEEEEEc
Confidence            4 445665 46778999999999999999999999998766643321 1222222233   5579976 78999999997


Q ss_pred             CCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc----CCCCCCCCCC
Q 038416          236 DPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE----IPCITCPVKP  310 (387)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~  310 (387)
                      +        ++.+.+.... ..+++.++++++++.+.|+...++.   ..++++++.+++.+.|++    .+.+..+  .
T Consensus       303 ~--------~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~i~~v--r  369 (443)
T PRK06058        303 A--------EIMDAPHPGGLGGTYGGNPVACAAALAAIETIEEDD---LVARARQIEALMTDRLRALAAEDDRIGDV--R  369 (443)
T ss_pred             H--------HHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHHHhhCCcEEee--e
Confidence            6        6766665432 3567889999999998887643332   334444445555555554    3322212  2


Q ss_pred             CceEEEEEecCcc--cccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHHHHh
Q 038416          311 QGAMFVMVKLNVS--MLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       311 ~~g~~~~~~~~~~--~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      ..|.++.+.+...  ..+.......+... +.++||.+.++..+  .+++|+.+  ..+++++++++++|.++++++
T Consensus       370 g~G~~~~i~~~~~~~~~~~~~~~~~l~~~-~~~~Gv~~~~~~~~--~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~~  443 (443)
T PRK06058        370 GRGAMIAIELVKPGTTEPDAELTKALAAA-AHAAGVIVLTCGTY--GNVIRLLPPLVIGDELLREGLDVLEAALADL  443 (443)
T ss_pred             ccceEEEEEEecCCCCCCcHHHHHHHHHH-HHHCCeEEeccCCC--CCEEEEECCCccCHHHHHHHHHHHHHHHHhC
Confidence            3355555555321  10000011233333 35679999886543  36899986  578999999999999998753

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.88  E-value=9.4e-20  Score=168.45  Aligned_cols=333  Identities=13%  Similarity=0.052  Sum_probs=217.9

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCC------CCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCC--
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYS------PTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARP--   96 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~------~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~--   96 (387)
                      -+++.+.+++...+.+....+|+      ......+++....+...+.|+  .+..+|-.-+ ++.|+.+++.++++|  
T Consensus        60 ~~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~--a~~anvqp~S-g~~An~~v~~all~~~~  136 (493)
T PRK13580         60 YSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFG--AEHAYVQPHS-GADANLVAFWAILAHKV  136 (493)
T ss_pred             cCCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhC--CCcccccCCC-cHHHHHHHHHHHhcccc
Confidence            47888999998888875444443      233455666666666666665  3334555444 577899999999876  


Q ss_pred             -----------------------------CCeEEEcCCCCcchHHH---hhccCCCceeeeeccCCCCCccCChhhHHHh
Q 038416           97 -----------------------------GANILIPRPGYPLYEIH---AAGSNNNLEARHYDLLPEKRWEVDLDGVEAL  144 (387)
Q Consensus        97 -----------------------------g~~vl~~~p~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~  144 (387)
                                                   ||+|+...+.+++....   ..++....++..++++++ ...+|.+++++.
T Consensus       137 ~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~-~g~iD~d~l~~~  215 (493)
T PRK13580        137 ESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPD-TGLLDYDEIAAL  215 (493)
T ss_pred             cCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhheeeeEecccCcc-cCccCHHHHHHH
Confidence                                         79999876665432111   110022245666666543 347999999999


Q ss_pred             hccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCc-cccccCCCccEEEEecCccccc
Q 038416          145 ADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYV-PMGVFGSIVPVITLGSISKRWI  223 (387)
Q Consensus       145 ~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~s~sK~~~  223 (387)
                      +++.++.|+++..+|-++ ..|   +++|.++|+++|+++++|++|+...+.+.... .....  ....++++|++|++ 
T Consensus       216 ~~~~~plvii~g~S~~~~-~~d---l~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~--~~~D~vtgT~hKaL-  288 (493)
T PRK13580        216 AREFKPLILVAGYSAYPR-RVN---FAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPV--PHADIVTTTTHKTL-  288 (493)
T ss_pred             HhhcCCEEEEeCccccCC-CcC---HHHHHHHHHHcCCEEEEECchhhceeccccchhhcCCC--CCCcEEEeCChhhc-
Confidence            999999999998887644 545   88888889999999999999996555432211 00001  12238899999985 


Q ss_pred             ccccceEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 038416          224 VPGWRLGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIP  302 (387)
Q Consensus       224 ~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  302 (387)
                       .|.+.|++++++        ++++.+..... ..+++.++..++....+....+....+..+++..+.+.+++.|++. 
T Consensus       289 -~GP~GG~I~~~~--------~l~~~L~~a~P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~-  358 (493)
T PRK13580        289 -RGPRGGLVLAKK--------EYADAVDKGCPLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFLKR-  358 (493)
T ss_pred             -cCCCeEEEEecH--------HHHHHHhhCCCcccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhc-
Confidence             344458998875        67777743322 2334555555544444443322223667899999999999999988 


Q ss_pred             CCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC------CCeEEEEeeC------ChHhHH
Q 038416          303 CITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM------KNWLRIAFAA------EPATLE  370 (387)
Q Consensus       303 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~------~~~~Ri~~~~------~~e~~~  370 (387)
                      |+.++........+++.+....     .....+.+.|.+.||.+.+-.....      ...+||++..      ++++++
T Consensus       359 G~~vv~ggTdshIV~V~lg~~~-----~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~  433 (493)
T PRK13580        359 GARLVTGGTDNHLVLIDVTSFG-----LTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMD  433 (493)
T ss_pred             CCCccCCCCCCCEEEEEeCCHH-----HHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHH
Confidence            7774422344556677775321     1233555566888999985433221      4579999832      579999


Q ss_pred             HHHHHHHHHHHHh
Q 038416          371 DGLERIKAFCQRH  383 (387)
Q Consensus       371 ~~~~~l~~~~~~~  383 (387)
                      .+++.|.++++..
T Consensus       434 ~iad~l~~~l~~~  446 (493)
T PRK13580        434 EVAELIVKVLSNT  446 (493)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999888653

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.88  E-value=1.7e-19  Score=167.54  Aligned_cols=317  Identities=16%  Similarity=0.166  Sum_probs=204.6

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh-cCCCCeEEEcC
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL-ARPGANILIPR  104 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~g~~vl~~~  104 (387)
                      .++.-.+++.+.+....   |.......++|+.++++++        .++.++++|+++|+..++.++ +++||+|+++.
T Consensus         8 ~~~~~~~~v~~~~~~~~---~~~g~~~~~le~~la~~~g--------~~~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~   76 (380)
T TIGR03588         8 IDQDDIDAVVEVLKSDF---LTQGPTVPAFEEALAEYVG--------AKYAVAFNSATSALHIACLALGVGPGDRVWTTP   76 (380)
T ss_pred             CCHHHHHHHHHHHhcCC---ccCChhHHHHHHHHHHHHC--------CCeEEEEcCHHHHHHHHHHHcCCCCCCEEEeCC
Confidence            45566788888876543   2223456899999999993        235566778999999999998 78999999999


Q ss_pred             CCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc----cCceEEEEeCCCCCccccCCHHHHHHHHHHHHhc
Q 038416          105 PGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD----ENTVAIVIINPGNPCGNVFSYQHLQKIARTARNL  180 (387)
Q Consensus       105 p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~  180 (387)
                      ++|..+...+.  ..|++++.++++++ ++.+|+++++++++    +++++|++++   ++|...+   +++|.++|+++
T Consensus        77 ~~~~~~~~~~~--~~G~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~t~~v~~~~---~~G~~~~---~~~i~~l~~~~  147 (380)
T TIGR03588        77 ITFVATANCAL--YCGAKVDFVDIDPD-TGNIDEDALEKKLAAAKGKLPKAIVPVD---FAGKSVD---MQAIAALAKKH  147 (380)
T ss_pred             cchHHHHHHHH--HcCCEEEEEecCCC-cCCcCHHHHHHHhhcccCCCceEEEEeC---CCCccCC---HHHHHHHHHHc
Confidence            99999988888  89999999998653 46789999999998    6888887654   5787755   88899999999


Q ss_pred             CcEEeecccccccc-cCCCCCccccccCCCccEEEEecCc--ccccccccceEEEEeeCCCCcccchhHHHHHHhhhhcc
Q 038416          181 GIIVIADEVYNHLA-FGSTPYVPMGVFGSIVPVITLGSIS--KRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAA  257 (387)
Q Consensus       181 ~~~li~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~s~s--K~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~  257 (387)
                      |+++|+|++++... +.+...... .+.    .+.+.|++  |.++.  ...|+++..+       +++.++++.....+
T Consensus       148 ~~~lI~D~a~a~g~~~~~~~~g~~-~~~----d~~~~S~~~~K~~~~--~~GG~v~~~~-------~~~~~~~~~~~~~g  213 (380)
T TIGR03588       148 GLKIIEDASHALGAEYGGKPVGNC-RYA----DATVFSFHPVKIITT--AEGGAVTTND-------EELAERMRLLRSHG  213 (380)
T ss_pred             CCEEEEECCCcccCccCCEeCCCc-ccc----ceEEEecCCCCcccc--cCceEEEECC-------HHHHHHHHHHHHCC
Confidence            99999999998532 333221110 011    37777876  77543  2467777754       25666665432211


Q ss_pred             CCcc---------------------hHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC---ce
Q 038416          258 SHPV---------------------TFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ---GA  313 (387)
Q Consensus       258 ~~~~---------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~g  313 (387)
                      ....                     ......+.+++....-..++++.++.+++.+++.+.|.+++++.....+.   ..
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~  293 (380)
T TIGR03588       214 ITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSA  293 (380)
T ss_pred             CCCCcccccccccCcceeeeeccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeE
Confidence            1000                     00000011111100112366777777888888889998887666332221   12


Q ss_pred             EEEE-EecCcccccCCCcHHHHHHHHHHhcCeEEEcCCcc-----------CC----------CCeEEEEee--CChHhH
Q 038416          314 MFVM-VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTV-----------GM----------KNWLRIAFA--AEPATL  369 (387)
Q Consensus       314 ~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~-----------~~----------~~~~Ri~~~--~~~e~~  369 (387)
                      ++.+ +.++..  .+ .+..++...| +++||.+......           ..          ...+++.++  .+++++
T Consensus       294 ~~~~~i~~~~~--~~-~~r~~l~~~L-~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv  369 (380)
T TIGR03588       294 WHLYPILLDQE--FG-CTRKEVFEAL-RAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQ  369 (380)
T ss_pred             EEEEEEEECCc--CC-CCHHHHHHHH-HHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHH
Confidence            2222 233311  01 1345666665 6779987643211           00          145777663  588999


Q ss_pred             HHHHHHHHHHH
Q 038416          370 EDGLERIKAFC  380 (387)
Q Consensus       370 ~~~~~~l~~~~  380 (387)
                      +..++.|++++
T Consensus       370 ~~i~~~l~~~~  380 (380)
T TIGR03588       370 QRVVETLRKVL  380 (380)
T ss_pred             HHHHHHHHHhC
Confidence            99999988763

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.88  E-value=6.3e-20  Score=167.12  Aligned_cols=325  Identities=13%  Similarity=0.024  Sum_probs=212.5

Q ss_pred             CCcHHHHHHHHHHhcCC---CCCCCCCC---CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCC-hHHHHHHHHHhhcCCC
Q 038416           25 SDSTVAEDAVVDALRTA---HYNCYSPT---LGVPSARRGIADYLNRDLPYKLSPEDVYLTLG-CSQAIEISLSVLARPG   97 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~---~~~~y~~~---~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g-~~~a~~~~~~~l~~~g   97 (387)
                      ..|..|++++.+.+.+.   ....+...   ....++-+.+.+.++..++.+ +.++|++++| +|.++++++.++..+|
T Consensus         2 ~~p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~-~~~~v~~~~gsgT~a~ea~~~nl~~~~   80 (349)
T TIGR01364         2 ALPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIP-DNYEVLFLQGGATGQFAAVPLNLLAEG   80 (349)
T ss_pred             CCCHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCC-CCceEEEEcCCchHHHHHHHHhcCCCC
Confidence            46889999999998852   12222221   111244444444444444421 3346777655 9999999999999899


Q ss_pred             CeEEEcCCCCcc--hHHHhhccCCCceeeeeccCCC--CCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHH
Q 038416           98 ANILIPRPGYPL--YEIHAAGSNNNLEARHYDLLPE--KRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKI  173 (387)
Q Consensus        98 ~~vl~~~p~~~~--~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l  173 (387)
                      +++++...+.++  +.+.++  ..|. +..+...+.  .+..+++++++  ++++++.|.+++..+.||+..+       
T Consensus        81 ~~~l~i~~G~fg~r~~~~a~--~~g~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~th~ETstGv~~~-------  148 (349)
T TIGR01364        81 KVADYIVTGAWSKKAAKEAK--KYGV-VNVVASGKEGNYTKIPDPSTWE--ISEDAAYVHYCANETIHGVEFR-------  148 (349)
T ss_pred             CeEEEEECCHHHHHHHHHHH--HhCC-cEEEeccccCCCCCCCCHHhcC--CCCCCCEEEEcCCCCcccEecc-------
Confidence            998887777764  467777  7888 666664322  22244555544  3567899999999999999865       


Q ss_pred             HHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccch---hHHHHH
Q 038416          174 ARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNS---GFVDSI  250 (387)
Q Consensus       174 ~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~---~~~~~~  250 (387)
                       ++++.+++++++|.+++.    +..+..+..+   +  +++.|.+|++|++|  +|+++.++...-.-+|   .+.+..
T Consensus       149 -~l~~~~~~l~iVDavss~----g~~~id~~~~---d--~~~~ssqK~lgP~G--lg~l~~s~~~~~~~~~~~~~~~~~~  216 (349)
T TIGR01364       149 -ELPDVKNAPLVADMSSNI----LSRPIDVSKF---G--LIYAGAQKNIGPAG--LTVVIVRKDLLGRASRITPSMLNYK  216 (349)
T ss_pred             -eecccCCCeEEEEccccc----cCccCCHHHc---c--EEEEecccccCCCc--eEEEEECHHHHhhcccCCCCcchHH
Confidence             455578999999999985    2233333332   2  88999999998777  7888887521100000   111111


Q ss_pred             --HhhhhccCCcchHHHHHHHHHhhhccHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC-CC--ceEEEEEecCccc
Q 038416          251 --KGCLNAASHPVTFIQAAVPRIVDETNEA-FFAKIIGLLKETADICYERIKEIPCITCPVK-PQ--GAMFVMVKLNVSM  324 (387)
Q Consensus       251 --~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~--~g~~~~~~~~~~~  324 (387)
                        .......++++.....++.++|+...+. .++.+.++.+++++++++.|++++|+..... +.  ....+.+.++.. 
T Consensus       217 ~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~-  295 (349)
T TIGR01364       217 IHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNE-  295 (349)
T ss_pred             HHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCCh-
Confidence              0111233578888888888888876666 6999999999999999999999976642311 21  212333444421 


Q ss_pred             ccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHH
Q 038416          325 LEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       325 ~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~  382 (387)
                          ....++.. .+.++|+.+.+|..  ..+.+|+|+.  .+.||++.+++.|++++++
T Consensus       296 ----~~~~~~~~-~~~~~Gi~~~~~~~--~~g~vRvS~~~~nt~edid~l~~al~~~~~~  348 (349)
T TIGR01364       296 ----ELEKRFLK-EAEERGLVSLKGHR--SVGGMRASIYNAMPLEGVQALVDFMKEFQKK  348 (349)
T ss_pred             ----hHhHHHHH-HHHHCCCcccCCcc--ccCeeEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence                01234444 44667997777654  2468999994  5799999999999987765

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.88  E-value=1.1e-19  Score=165.77  Aligned_cols=336  Identities=18%  Similarity=0.138  Sum_probs=208.2

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc--CCCCeEEEc
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA--RPGANILIP  103 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~g~~vl~~  103 (387)
                      .+|.|.+|+++++..-...++..  .+.+....+++.+....+.. ..+.+++++++++|++.+++...  ..+..|+.+
T Consensus        73 ~hP~Vv~Av~~q~~~~~h~~~~~--~~~e~~v~~ae~L~~~~p~~-~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf  149 (447)
T COG0160          73 NHPRVVEAVKRQLAKLNHTHTRD--LYYEPYVELAEKLTALAPGS-GLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAF  149 (447)
T ss_pred             CCHHHHHHHHHHHHHhhcccCCc--ccchhHHHHHHHHHHhCCcc-cCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEE
Confidence            68999999999887632112221  22133444444444322211 45689999999999999999863  334789999


Q ss_pred             CCCCcchHHHhhccCCC-------------ceeeeeccCCC--CCccC--------ChhhHHHhhc-----cCceEEEEe
Q 038416          104 RPGYPLYEIHAAGSNNN-------------LEARHYDLLPE--KRWEV--------DLDGVEALAD-----ENTVAIVII  155 (387)
Q Consensus       104 ~p~~~~~~~~~~~~~~g-------------~~~~~~~~~~~--~~~~~--------~~~~l~~~~~-----~~~~~v~l~  155 (387)
                      ...|++...... +..+             ..++.+|.+..  ..+..        ..+.++..+.     +...+.++.
T Consensus       150 ~~afHG~T~gal-slT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~  228 (447)
T COG0160         150 DGAFHGRTLGAL-SLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIII  228 (447)
T ss_pred             CCcccccchhhH-HhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEE
Confidence            999986432222 0111             12444444321  11111        2333444332     234555566


Q ss_pred             CC-CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEE
Q 038416          156 NP-GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLV  233 (387)
Q Consensus       156 ~p-~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~  233 (387)
                      .| +...|.. .|.+.++++.++|++||+++|+||++.++...|+.+ .+...+   -..-|-+++|.++. |+++|.++
T Consensus       229 EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~f-a~E~~g---v~PDivt~aK~ig~-G~Pl~avv  303 (447)
T COG0160         229 EPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMF-AFEHFG---VEPDIVTLAKSLGG-GLPLSAVV  303 (447)
T ss_pred             ecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccch-hhhhcC---CCCCEEEecccccC-CCceeEEe
Confidence            66 7788886 666779999999999999999999999998887422 222222   22334478899755 99999999


Q ss_pred             eeCCCCcccchhHHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHH-HHHHHHHHHhhcCCCCCCCCCCCc
Q 038416          234 TSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLK-ETADICYERIKEIPCITCPVKPQG  312 (387)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~  312 (387)
                      .+.        ++.++.......++..++++.+++.+.|+..+++.+.++...+- ..++.+.+.-++.|.+..  ...-
T Consensus       304 ~r~--------ei~~~~~g~~~~Tf~GNpva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l~~~~~~Igd--VRG~  373 (447)
T COG0160         304 GRA--------EIMDWPPGGHGGTFGGNPVACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPLIGD--VRGL  373 (447)
T ss_pred             ccH--------HhcccCCcccCCCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhcCceec--cccc
Confidence            976        56663333334568899999999999888655544444333332 333333333333554442  2344


Q ss_pred             eEEEEEecCcccc---cCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHHHHh
Q 038416          313 AMFVMVKLNVSML---EDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       313 g~~~~~~~~~~~~---~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      |.++-+.+-+...   |.......++.+ +.++|+.+..++.  ..+.+||.+  ..++++++.+++.|.+++++.
T Consensus       374 Glm~giE~v~d~~t~~p~~~~~~~i~~~-~~~~Glil~~~G~--~~nviRi~PPL~is~e~~d~~l~il~~al~~~  446 (447)
T COG0160         374 GLMIGVELVKDRDTKEPDAELAAKIVAR-AFERGLLLLTCGP--HGNVLRILPPLTISDEELDEGLDILEEALKEA  446 (447)
T ss_pred             ceEEEEEEecCCCCCCCCHHHHHHHHHH-HHHcCCEEeccCC--CCcEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence            7777777654221   111122344444 4667988876542  257899999  568999999999999999875

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.88  E-value=2.3e-19  Score=167.17  Aligned_cols=229  Identities=17%  Similarity=0.119  Sum_probs=160.6

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchH----HHhhccCCCceeee
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYE----IHAAGSNNNLEARH  125 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~----~~~~~~~~g~~~~~  125 (387)
                      .....+++.++++++        .+..++++++++|+.+++.+++++||+|+++...|.+..    ..+.  ..|+++..
T Consensus        69 pt~~~le~~la~l~g--------~~~~v~fsSG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~--~~Gi~v~~  138 (437)
T PRK05613         69 PTVEALENRIASLEG--------GVHAVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLN--RLGIEVTF  138 (437)
T ss_pred             hHHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHH--hcCeEEEE
Confidence            345778888888872        245566666668999989888999999999999998764    3446  78999888


Q ss_pred             eccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccc
Q 038416          126 YDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV  205 (387)
Q Consensus       126 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~  205 (387)
                      ++ ++     .|++++++++++++++|++.++.||+|.+.+   +++|.++|+++|+++|+|.+++...    ...++ .
T Consensus       139 vd-~~-----~d~e~l~~~l~~~tk~V~~e~~~Np~~~v~d---i~~I~~la~~~gi~livD~t~a~g~----~~~p~-~  204 (437)
T PRK05613        139 VE-NP-----DDPESWQAAVQPNTKAFFGETFANPQADVLD---IPAVAEVAHRNQVPLIVDNTIATAA----LVRPL-E  204 (437)
T ss_pred             EC-CC-----CCHHHHHHhCCccCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCeEEEECCCcccc----ccChH-H
Confidence            86 22     2789999999999999999999999998877   8888999999999999999987422    12222 2


Q ss_pred             cCCCccEEEEecCcccccccccceEEEEeeCCCCccc----------------------------chhHHHHHH-hh-hh
Q 038416          206 FGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQ----------------------------NSGFVDSIK-GC-LN  255 (387)
Q Consensus       206 ~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~----------------------------~~~~~~~~~-~~-~~  255 (387)
                      +..   .+++.|++|.++..|.-+|.+++.+....+.                            ..++..+.+ .. ..
T Consensus       205 ~Ga---Divv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (437)
T PRK05613        205 LGA---DVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARAGLLRD  281 (437)
T ss_pred             hCC---CEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHHHHHHHHHHh
Confidence            223   3889999999877665556655532110000                            000111111 11 23


Q ss_pred             ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 038416          256 AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKP  310 (387)
Q Consensus       256 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  310 (387)
                      .+...+++..+.+..-|+.     +.-+.++..+++..+.+.|++.|.+..+.+|
T Consensus       282 ~G~~~~p~~a~l~~rgl~T-----L~lR~~~~~~nA~~lA~~L~~hp~V~~V~yP  331 (437)
T PRK05613        282 TGATLSPFNAWVTAQGLDT-----LSLRLERHNENAIKVAEFLNNHEKVAKVNFA  331 (437)
T ss_pred             cCCCCCHHHHHHHHcccCc-----HHHHHHHHHHHHHHHHHHHHcCCCcceEECC
Confidence            4566677766666555554     7778889999999999999998776544443

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.88  E-value=5.6e-20  Score=172.65  Aligned_cols=346  Identities=16%  Similarity=0.145  Sum_probs=205.3

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      .+.++.-|.-...-.+ .+|.+.+++++++.......+..  -..+.+..+++.+.+..+  ...+.++++++|++|++.
T Consensus        43 ~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~~~~~~--~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~  117 (423)
T PRK05964         43 ELIDAISSWWVATHGH-NHPYIDQAIREQLDRLDHVIFAG--FTHEPAERLAQRLVALTP--GGLDHVFFSDSGSVAVEV  117 (423)
T ss_pred             EEEEcchhHHhccCCC-CCHHHHHHHHHHHhhCCCccccc--cCCHHHHHHHHHHHHhCC--CCCCEEEEeCCcHHHHHH
Confidence            4555544432222222 46899999999987632111111  112444555665554332  124689999999999999


Q ss_pred             HHHhhcC-------CC-CeEEEcCCCCcchHHHhhccCCCc------------eeeeeccCCCCCccCChhhHHHhhcc-
Q 038416           89 SLSVLAR-------PG-ANILIPRPGYPLYEIHAAGSNNNL------------EARHYDLLPEKRWEVDLDGVEALADE-  147 (387)
Q Consensus        89 ~~~~l~~-------~g-~~vl~~~p~~~~~~~~~~~~~~g~------------~~~~~~~~~~~~~~~~~~~l~~~~~~-  147 (387)
                      +++....       +| .+|+....+|++...... +..+-            .+..++.+..+....+++.+++.+.. 
T Consensus       118 A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~l-s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~  196 (423)
T PRK05964        118 ALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTM-SVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKH  196 (423)
T ss_pred             HHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHH-hcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhC
Confidence            9987531       23 689999999987654333 01111            11222221111001126777777742 


Q ss_pred             -CceEEEEeCC--CCCccccC-CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCccccc
Q 038416          148 -NTVAIVIINP--GNPCGNVF-SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWI  223 (387)
Q Consensus       148 -~~~~v~l~~p--~nptG~~~-~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~  223 (387)
                       +..+.++..|  ++.+|..+ +.++++++.++|++||+++|+||++.++...|..+. ...++..   ..+.+++|+++
T Consensus       197 ~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a-~~~~~v~---pDi~~~~K~l~  272 (423)
T PRK05964        197 AGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFA-CEQAGVS---PDIMCLSKGLT  272 (423)
T ss_pred             CCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhH-HHhcCCC---CCeeeeehhhh
Confidence             2333445555  66778765 888899999999999999999999998766553221 1112111   22347889976


Q ss_pred             ccccceEEEEeeCCCCcccchhHHHHHHhh-------hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Q 038416          224 VPGWRLGWLVTSDPNGILQNSGFVDSIKGC-------LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYE  296 (387)
Q Consensus       224 ~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  296 (387)
                      .+++++|++++++        ++.+.+...       ...+++.++++..++.+.++...++   ...+++.++.+.+++
T Consensus       273 gG~~p~~av~~~~--------~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~---~~~~~~~~~g~~l~~  341 (423)
T PRK05964        273 GGYLPLAATLCTA--------EIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDE---PVLERVAALSAGLAE  341 (423)
T ss_pred             cCcccceEEEEcH--------HHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHH
Confidence            5558999998865        677766431       1233457888888887777743221   233444444555555


Q ss_pred             HhhcCCCCCCCC-CCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHH
Q 038416          297 RIKEIPCITCPV-KPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGL  373 (387)
Q Consensus       297 ~l~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~  373 (387)
                      .|+++.....+. ....|.++.+.+..... . .....+...+ .++||.+.+.     .+.+|+++.  +++++++.++
T Consensus       342 ~l~~l~~~~~i~~vrg~Gl~~~i~l~~~~~-~-~~~~~l~~~l-~~~Gv~v~~~-----~~~lR~~p~l~~t~edId~~v  413 (423)
T PRK05964        342 GLEPFRDLPGVADVRVLGAIGAVELDRPVL-E-RDGPALRAFA-LERGVLLRPL-----GNTIYLMPPYIITAEELDRIT  413 (423)
T ss_pred             HHHhhccCCCeEEeecccEEEEEEeccCcc-h-hHHHHHHHHH-HHCCeEEEec-----CCEEEEeCCcccCHHHHHHHH
Confidence            554432222111 12345566666643100 0 0123455554 6679999874     357999985  7899999999


Q ss_pred             HHHHHHHHHh
Q 038416          374 ERIKAFCQRH  383 (387)
Q Consensus       374 ~~l~~~~~~~  383 (387)
                      +.++++++++
T Consensus       414 ~~l~~al~~~  423 (423)
T PRK05964        414 DAIVEVADEL  423 (423)
T ss_pred             HHHHHHHhhC
Confidence            9999998764

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.88  E-value=1.8e-19  Score=168.09  Aligned_cols=331  Identities=14%  Similarity=0.077  Sum_probs=195.8

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCC-CCCCEEE-cCChHHHHHHHHHhhc--CCCCeEE
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKL-SPEDVYL-TLGCSQAIEISLSVLA--RPGANIL  101 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~-~~~~i~~-~~g~~~a~~~~~~~l~--~~g~~vl  101 (387)
                      .+|.+.+++++++.....  ........+.+..+++.+.+....+. ..+.+++ ++++++|++.+++...  ....+|+
T Consensus        52 ~~p~v~~ai~~ql~~~~~--~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii  129 (412)
T TIGR02407        52 NNPKLKQALIDYLADDGI--IHSLDMATEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARKVTGRSNVV  129 (412)
T ss_pred             CCHHHHHHHHHHHhhccc--eeccccCcHHHHHHHHHHHHhccCccCCCceEEEeCCCchHHHHHHHHHHhhhcCCCeEE
Confidence            688999999998874211  11111123455556665544211011 1124655 5899999999999864  2236899


Q ss_pred             EcCCCCcchHHHhhccCCCc------------eeeeeccCCCCCc-cCChhhHHHhhcc-----CceEEEEeCC-CCCcc
Q 038416          102 IPRPGYPLYEIHAAGSNNNL------------EARHYDLLPEKRW-EVDLDGVEALADE-----NTVAIVIINP-GNPCG  162 (387)
Q Consensus       102 ~~~p~~~~~~~~~~~~~~g~------------~~~~~~~~~~~~~-~~~~~~l~~~~~~-----~~~~v~l~~p-~nptG  162 (387)
                      ....+|++....+. +..+.            .+..+|.+..... .-+++.+++.++.     ...+.++..| +++.|
T Consensus       130 ~~~~~yHG~t~~al-s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G  208 (412)
T TIGR02407       130 SFTNAFHGMTLGSL-SVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGG  208 (412)
T ss_pred             EECCCcCCchHHHH-HhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCC
Confidence            99999998654433 01111            1122222110000 0135667777752     1223444555 78889


Q ss_pred             c-cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCCccEEEEecCcccccccccceEEEEeeCCCCc
Q 038416          163 N-VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGI  240 (387)
Q Consensus       163 ~-~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~  240 (387)
                      . .+|.+.+++|.++|++||+++|+||++.++...|..+.. ...+.++     +.+++|.++..|+|+|++++++    
T Consensus       209 ~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PD-----i~~~~K~lg~~G~pigav~~~~----  279 (412)
T TIGR02407       209 INVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPD-----IVCLSKSISGYGLPLALTLIKP----  279 (412)
T ss_pred             CccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCC-----EEEechhccCCccceeEEEEch----
Confidence            8 578888999999999999999999999987655543221 1223333     3468899654489999999975    


Q ss_pred             ccchhHHHHHHhh-hhccCCcchHHHHHHHHHhhh-ccHHHHHHHH-HHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEE
Q 038416          241 LQNSGFVDSIKGC-LNAASHPVTFIQAAVPRIVDE-TNEAFFAKII-GLLKETADICYERIKEIPCITCPVKPQGAMFVM  317 (387)
Q Consensus       241 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~  317 (387)
                          ++ +.+... ...+++.++++..++.+.++. ..+..+.++. +.-...++.+.+..+.++++. ...+..|.++|
T Consensus       280 ----~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~-~~vrg~Gl~~~  353 (412)
T TIGR02407       280 ----EL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERLDRIVAEYPELI-KQVRGRGLMQG  353 (412)
T ss_pred             ----hh-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhCCCce-EeeecceeEEE
Confidence                33 333212 224566777776665665553 2222222222 222223333333333344333 32456788999


Q ss_pred             EecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHH
Q 038416          318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~  382 (387)
                      +.++...     ....+...+ .++||.+.+...  .++.+|+++.  .++++++++++.|.+++++
T Consensus       354 l~l~~~~-----~~~~~~~~~-~~~Gv~v~~~~~--~~~~lr~~p~l~~t~~~i~~~~~~l~~~l~~  412 (412)
T TIGR02407       354 IECGDGD-----LAGKIAKAA-FENGLIIETSGP--NDEVIKLLPPLTIDEETLQQGLDILEQAVEE  412 (412)
T ss_pred             EEecChH-----HHHHHHHHH-HHCCCEEeccCC--CCCEEEEECCCCCCHHHHHHHHHHHHHHHhC
Confidence            9986421     123454544 567999987432  1467999994  6899999999999998863

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.87  E-value=2.7e-19  Score=167.82  Aligned_cols=347  Identities=14%  Similarity=0.102  Sum_probs=203.3

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCC-CEEE-cCChHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYL-TLGCSQAI   86 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~-~i~~-~~g~~~a~   86 (387)
                      .+++..-|.......+ .+|.+.+++++++.....  ........+.+..+++.+.+....+...+ .+++ +++|++|+
T Consensus        40 ~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~~~~--~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~  116 (425)
T PRK09264         40 EYIDFFAGAGALNYGH-NNPVLKQALIDYLQRDGI--THGLDMHTTAKREFLETFEETILKPRGLDYKVQFTGPTGTNAV  116 (425)
T ss_pred             EeeecccchhhccCCC-CCHHHHHHHHHHHHhccc--ccccccCcHHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHHH
Confidence            4555544432222122 688999999998875211  11111123445555555544221111122 5656 58999999


Q ss_pred             HHHHHhhc--CCCCeEEEcCCCCcchHHHhhccCC-C---------c---eeeeeccCCCCCc-cCChhhHHHhhcc---
Q 038416           87 EISLSVLA--RPGANILIPRPGYPLYEIHAAGSNN-N---------L---EARHYDLLPEKRW-EVDLDGVEALADE---  147 (387)
Q Consensus        87 ~~~~~~l~--~~g~~vl~~~p~~~~~~~~~~~~~~-g---------~---~~~~~~~~~~~~~-~~~~~~l~~~~~~---  147 (387)
                      +.+++...  ....+|+....+|++......  .. +         .   .+..+|.+..... .-|++++++.+..   
T Consensus       117 e~AlklAr~~tgr~~ii~~~~~yHG~t~~~l--s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~  194 (425)
T PRK09264        117 EAALKLARKVTGRTNIVAFTNGFHGMTLGSL--AVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSS  194 (425)
T ss_pred             HHHHHHHHHhcCCCeEEEECCccCCccHHHH--HhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccC
Confidence            99998864  223678988999988654322  11 1         0   1223332211000 0256777777742   


Q ss_pred             --CceEEEEeCC-CCCccc-cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCCccEEEEecCcccc
Q 038416          148 --NTVAIVIINP-GNPCGN-VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVITLGSISKRW  222 (387)
Q Consensus       148 --~~~~v~l~~p-~nptG~-~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~s~sK~~  222 (387)
                        ...+.++..| +...|+ .+|++.+++|.++|++||+++|+||++.+++..|..+.. ...+.++     +.+++|.+
T Consensus       195 ~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PD-----i~t~~K~l  269 (425)
T PRK09264        195 GVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPD-----IVTLSKSI  269 (425)
T ss_pred             CCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCCC-----EEEecccc
Confidence              1234455555 666776 578889999999999999999999999987665532211 1122332     34678998


Q ss_pred             cccccceEEEEeeCCCCcccchhHHHHHHhh-hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc-
Q 038416          223 IVPGWRLGWLVTSDPNGILQNSGFVDSIKGC-LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE-  300 (387)
Q Consensus       223 ~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-  300 (387)
                      +..|+++|++++++        ++ ..+... ...+++.++++..++.+.+....++  .+..++++++.+++++.|++ 
T Consensus       270 ~~~G~pigav~~~~--------~i-~~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~~--~~l~~~~~~~g~~l~~~l~~l  338 (425)
T PRK09264        270 SGYGLPMALVLIKP--------EL-DVWKPGEHNGTFRGNNLAFVTATAALEEYWSD--DAFEKEVKAKGELVRERLEEI  338 (425)
T ss_pred             CCCccceEEEEEch--------hh-hccCCCccCCCCCCCHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHH
Confidence            76699999999975        33 223221 1234566777777665666321111  12334444444455544443 


Q ss_pred             ---CCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHH
Q 038416          301 ---IPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLER  375 (387)
Q Consensus       301 ---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~  375 (387)
                         .|.+. ...+..|.++++.++..     .....+...+ .++||.+.+...+  ...+|+++.  .+++++++++++
T Consensus       339 ~~~~~~~~-~~vrg~Gl~~~i~l~~~-----~~~~~l~~~~-~~~Gv~~~~~~~~--~~~lr~~p~l~~t~~ei~~~~~~  409 (425)
T PRK09264        339 AAKYPGLG-AEVRGRGMMQGIDFGDG-----ELAGKIAAEA-FENGLIIETSGPE--DEVVKLLPPLTIDEEELEEGLDI  409 (425)
T ss_pred             HHhCCCce-ecceecccEEEEEecCh-----HHHHHHHHHH-HHCCCEEeccCCC--CCEEEEeCCCCCCHHHHHHHHHH
Confidence               43321 22345677888888531     1233455444 5679999875332  367888875  689999999999


Q ss_pred             HHHHHHHhhh
Q 038416          376 IKAFCQRHAK  385 (387)
Q Consensus       376 l~~~~~~~~~  385 (387)
                      |.++++++.+
T Consensus       410 l~~~l~~~~~  419 (425)
T PRK09264        410 LEEAVAEVLA  419 (425)
T ss_pred             HHHHHHHHHh
Confidence            9999987654

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.87  E-value=3.7e-20  Score=169.92  Aligned_cols=320  Identities=13%  Similarity=0.063  Sum_probs=203.4

Q ss_pred             CCCcHHHHHHHHHHhcCC---CCCCCCCC-------CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCC-hHHHHHHHHHh
Q 038416           24 LSDSTVAEDAVVDALRTA---HYNCYSPT-------LGVPSARRGIADYLNRDLPYKLSPEDVYLTLG-CSQAIEISLSV   92 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~---~~~~y~~~-------~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g-~~~a~~~~~~~   92 (387)
                      .+.|+.|++++.+.+.+.   ....|...       ....+.|+.++++++    . .++++|++++| +|++++.++.+
T Consensus         8 ~~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~----~-~~~~~vvf~~gs~T~a~~~~~~~   82 (355)
T cd00611           8 AALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLN----I-PDNYKVLFLQGGATGQFAAVPLN   82 (355)
T ss_pred             CCCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhC----C-CCCceEEEEcCCchHHHHHHHHh
Confidence            378999999999987421   11112211       235567777777773    1 14568988877 99999999999


Q ss_pred             hcC---CCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCC-hhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           93 LAR---PGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVD-LDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        93 l~~---~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      +..   +|+.|++ .+....+.+.++  ..|.++..++.+...++ .+ ++..+..+++++++|.+++..|.||+.++  
T Consensus        83 l~~~~~~~~~i~~-g~~~~~~~~~a~--~~g~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~lV~~~h~~t~tG~~~~--  156 (355)
T cd00611          83 LLGDKGTADYVVT-GAWSAKAAKEAK--RYGGVVVIVAAKEEGKY-TKIPDVETWDLAPDAAYVHYCSNETIHGVEFD--  156 (355)
T ss_pred             cCCCCCeEEEEEC-CHHHHHHHHHHH--hcCCCcEEEecccccCC-CCCCCHhhcCCCCCCCEEEEeCCcccccEEcc--
Confidence            987   4455544 222223344667  78988888876432222 13 33333446778999999999999999843  


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccch---h
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNS---G  245 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~---~  245 (387)
                            ++++.+|+++++|.+++.    |..+..+..++     +.+.|.+|.+|++|  +|++++++...-.-.|   .
T Consensus       157 ------~i~~~~g~~~~VDa~qs~----g~~~idv~~~~-----~~~ss~~K~lGP~G--~g~l~~~~~~~~~~~~~~~~  219 (355)
T cd00611         157 ------EVPDTGGVPLVADMSSNI----LSRPIDVSKFG-----VIYAGAQKNLGPAG--VTVVIVRKDLLGKARKITPS  219 (355)
T ss_pred             ------eecccCCCeEEEEccccc----cCCCCCHHHhC-----EEEeecccccCCCc--eEEEEECHHHHhhcccCCCC
Confidence                  233458999999999985    32333333332     45566899988777  7888887521100001   1


Q ss_pred             HHHHHH--hhhhccCCcchHHHHHHHHHhhhccHH-HHHHHHHHHHHHHHHHHHHhhcCCCCC-CCCCC--CceEEEEEe
Q 038416          246 FVDSIK--GCLNAASHPVTFIQAAVPRIVDETNEA-FFAKIIGLLKETADICYERIKEIPCIT-CPVKP--QGAMFVMVK  319 (387)
Q Consensus       246 ~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~--~~g~~~~~~  319 (387)
                      ..+...  ......++++.....++.++++...+. .++.+.++.+++++++++.|+++||+. ....+  ..+..+.+.
T Consensus       220 ~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~  299 (355)
T cd00611         220 MLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFR  299 (355)
T ss_pred             cccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEE
Confidence            111000  111124577777888888888876666 689999999999999999999997753 12111  122223334


Q ss_pred             cCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHH
Q 038416          320 LNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAF  379 (387)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~  379 (387)
                      ++..     ....++... +.+.|+.+.+|..  ..+.+|+|++  ++.+|++++++.|+++
T Consensus       300 ~~~~-----~l~~~~~~~-~~r~G~~~~~~~~--~~g~vR~S~~~~nt~edi~~l~~al~~~  353 (355)
T cd00611         300 LGKE-----ELEKEFLKE-AEAAGMIGLKGHR--SVGGIRASIYNALSLEGVQALADFMKEF  353 (355)
T ss_pred             cCCh-----hhhHHHHHH-HHHCCCcccCCCc--ccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence            4321     012333333 4567998655543  2478999995  4899999999998874

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.87  E-value=4.8e-19  Score=164.24  Aligned_cols=337  Identities=12%  Similarity=0.095  Sum_probs=212.0

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      +.+++++-|.-..+-.+. +|.+.+++++++.+... .+.  ....+++..+++++.+..    ..+.+++++|+++|++
T Consensus        36 ~~~lD~~sg~~~~~lGh~-~p~v~~a~~~q~~~~~~-~~~--~~~~~~~~~la~~l~~~~----~~~~v~f~~SGseA~e  107 (395)
T PRK03715         36 KRYLDFIQGWAVNCLGHC-NPGMVEALAAQAEKLIN-PSP--AFYNEPMAKLAGLLTQHS----CFDKVFFANSGAEANE  107 (395)
T ss_pred             CEEEECCcChhhccCCCC-CHHHHHHHHHHHHhccc-ccc--cccCHHHHHHHHHHhhcc----CCCEEEEeCCcHHHHH
Confidence            345555444332333444 69999999999875321 111  234577888898886532    2468999999999999


Q ss_pred             HHHHhhcC------CC-CeEEEcCCCCcchHHHhhccCCCceee---eeccCCCCC--ccCChhhHHHhhccCceEEEEe
Q 038416           88 ISLSVLAR------PG-ANILIPRPGYPLYEIHAAGSNNNLEAR---HYDLLPEKR--WEVDLDGVEALADENTVAIVII  155 (387)
Q Consensus        88 ~~~~~l~~------~g-~~vl~~~p~~~~~~~~~~~~~~g~~~~---~~~~~~~~~--~~~~~~~l~~~~~~~~~~v~l~  155 (387)
                      .+++....      +| ++|++.+.+|++...... +..+....   ..|..+.-.  ...|++++++.+++++.+|++.
T Consensus       108 ~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aavi~E  186 (395)
T PRK03715        108 GAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATM-SASGKPGWDTIFAPQVPGFPKAELNDIASVEKLITDKTVAVMLE  186 (395)
T ss_pred             HHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHH-hhcCCcccccCCCCCCCCceeeCCchHHHHHHHcCCCceEEEEe
Confidence            99998751      23 678888888887643333 02232211   111111000  0136888998887677777766


Q ss_pred             CCCCCccccC-CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCCccEEEEecCcccccccccceEEEE
Q 038416          156 NPGNPCGNVF-SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVITLGSISKRWIVPGWRLGWLV  233 (387)
Q Consensus       156 ~p~nptG~~~-~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~  233 (387)
                      ..++..|... |++.++++.++|++||+++|+||++.++...|..+.. .....+|     +.+++|.++ .|+++|.++
T Consensus       187 pv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PD-----i~t~gK~lg-~G~p~~av~  260 (395)
T PRK03715        187 PVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPD-----IMTLGKGIG-GGVPLAALL  260 (395)
T ss_pred             CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCc-----eeeehhhhh-CCcceEEEE
Confidence            6677788874 6888999999999999999999999987666653321 1122222     457889975 568999999


Q ss_pred             eeCCCCcccchhHHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcC---CCCCCCCCC
Q 038416          234 TSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEI---PCITCPVKP  310 (387)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~  310 (387)
                      +++        ++..........+++.++...+++.+.|+...+   ++..++++++.+++++.|+++   .++..  ..
T Consensus       261 ~~~--------~i~~~~~~~~~~T~~g~pl~~aaala~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~~~i~~--vr  327 (395)
T PRK03715        261 AKA--------EVAVFEAGDQGGTYNGNPLMTAVGVAVISQLLA---PGFLEGVRARGEYLKEKLLELSEERGLEG--ER  327 (395)
T ss_pred             Ecc--------ccccccCCCcCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHhhcCCcCe--EE
Confidence            876        333111111123456678888877777765332   234455555556666666543   12331  23


Q ss_pred             CceEEEEEecCcccccCCCcHHHHHHHHHHhc---CeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHh
Q 038416          311 QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEE---SVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       311 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~---gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                      ..|.++-+.+..       +....+...+.+.   |+.+.+..    .+.+|+++.  .++++++++++.|+++++++
T Consensus       328 G~Glm~~i~l~~-------~~~~~~~~~~~~~~~~Gi~~~~~~----~~~lR~~p~l~~t~~ei~~~~~~l~~~l~~~  394 (395)
T PRK03715        328 GEGLLRALLLGK-------DIGPQIVEKARDMQPDGLLLNAPR----PNLLRFMPALNVTTEEIDQMIAMLRSVLDKL  394 (395)
T ss_pred             cceeEEEEEecC-------chHHHHHHHHHhccCCCEEEeecC----CCEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence            446666666643       1112222333445   99886532    478999994  68999999999999998764

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.87  E-value=4.9e-19  Score=159.53  Aligned_cols=286  Identities=18%  Similarity=0.163  Sum_probs=201.4

Q ss_pred             CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhh--ccCCCceeeee
Q 038416           49 TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAA--GSNNNLEARHY  126 (387)
Q Consensus        49 ~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~--~~~~g~~~~~~  126 (387)
                      .+....|++.++++-        ..++.+.+++|+.|+..++.+++++||+|+++...|.+....+.  +...|+++.++
T Consensus        62 nPT~~~lE~~~a~LE--------g~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~  133 (396)
T COG0626          62 NPTRDALEEALAELE--------GGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFV  133 (396)
T ss_pred             CccHHHHHHHHHHhh--------CCCcEEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEE
Confidence            456788888888876        56789999999999999999999999999999999988655544  22677777776


Q ss_pred             ccCCCCCccCChhhHHHhhc-cCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccc
Q 038416          127 DLLPEKRWEVDLDGVEALAD-ENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV  205 (387)
Q Consensus       127 ~~~~~~~~~~~~~~l~~~~~-~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~  205 (387)
                      +.       .+.+++++++. +++++|++..|+||+..+.+   +.+|+++|+++|+.+|+|+.++.-.+.    .|+ .
T Consensus       134 d~-------~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~D---I~~i~~~A~~~g~~vvVDNTfatP~~q----~PL-~  198 (396)
T COG0626         134 DP-------GDDEALEAAIKEPNTKLVFLETPSNPLLEVPD---IPAIARLAKAYGALVVVDNTFATPVLQ----RPL-E  198 (396)
T ss_pred             CC-------CChHHHHHHhcccCceEEEEeCCCCccccccc---HHHHHHHHHhcCCEEEEECCccccccc----Chh-h
Confidence            42       24556666666 59999999999999988854   999999999999999999999863322    122 1


Q ss_pred             cCCCccEEEEecCcccccccc-cceEEEEeeCCCCcccchhHHHHHHhh-h-hccCCcchHHHHHHHHHhhhccHHHHHH
Q 038416          206 FGSIVPVITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGFVDSIKGC-L-NAASHPVTFIQAAVPRIVDETNEAFFAK  282 (387)
Q Consensus       206 ~~~~~~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~  282 (387)
                      +..+   +++.|.+|.++..+ .=.|.+++++       +++.+.+... . .....++++..+.+..-++.     +.-
T Consensus       199 ~GaD---IVvhSaTKyl~GHsDvl~G~v~~~~-------~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlkT-----L~~  263 (396)
T COG0626         199 LGAD---IVVHSATKYLGGHSDVLGGVVLTPN-------EELYELLFFAQRANTGAVLSPFDAWLLLRGLRT-----LAL  263 (396)
T ss_pred             cCCC---EEEEeccccccCCcceeeeEEecCh-------HHHHHHHHHHHHhhcCCCCCHHHHHHHHhccch-----HHH
Confidence            2233   99999999986544 4455455443       2455554332 2 25566777777666655554     777


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCC----------------ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEE
Q 038416          283 IIGLLKETADICYERIKEIPCITCPVKPQ----------------GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVII  346 (387)
Q Consensus       283 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v  346 (387)
                      +.+++.+++..+.+.|++.|.+..+.+|.                .|-++.+.+..        . +.+.++++.-.+..
T Consensus       264 Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~--------~-~~~~~f~~~L~l~~  334 (396)
T COG0626         264 RMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKN--------E-EAAKKFLDSLKLFK  334 (396)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCC--------h-HHHHHHHHhCCccE
Confidence            88999999999999999988877776774                45555666652        1 33333333333222


Q ss_pred             ---EcCCccC----------------------C-CCeEEEEeeCChHhHHHHHHHHHHHHHHh
Q 038416          347 ---LPGRTVG----------------------M-KNWLRIAFAAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       347 ---~~g~~~~----------------------~-~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~  383 (387)
                         +-|+...                      . ++-+|+|++.  |+++.+++.|+++++..
T Consensus       335 ~a~SlGgveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVGl--Ed~eDLi~Dl~~Al~~~  395 (396)
T COG0626         335 LAESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVGL--EDVEDLIADLEQALAKA  395 (396)
T ss_pred             EeccCCCcccccccccccCcccCCHhHHHhcCCCCCeEEEEecC--CCHHHHHHHHHHHHHhh
Confidence               2221110                      0 3679999998  77777888888887654

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.87  E-value=3.2e-19  Score=168.72  Aligned_cols=329  Identities=12%  Similarity=0.055  Sum_probs=203.8

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCC------CCCcHH----HHHHHHHHHhhcCCCCCCCCCEEEc---CChHHHHHHHHH
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSP------TLGVPS----ARRGIADYLNRDLPYKLSPEDVYLT---LGCSQAIEISLS   91 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~------~~~~~~----lr~~ia~~~~~~~~~~~~~~~i~~~---~g~~~a~~~~~~   91 (387)
                      .++|.+++++...+.+....+++.      ......    .|+.+++++      +.+++++.++   +|+++++..++.
T Consensus        45 ~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf------~a~~~~~~~~~~~~sgt~an~~v~~  118 (452)
T PTZ00094         45 FTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAF------GLDPEEWGVNVQPYSGSPANFAVYT  118 (452)
T ss_pred             cCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHh------CCCcccceeecCCCchHHHHHHHHH
Confidence            578889999999887532212221      111222    344566666      3466676566   789999999999


Q ss_pred             hhcCCCCeEEEcCCCCcchHHHhhc--------cCCCceeeeeccCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCcc
Q 038416           92 VLARPGANILIPRPGYPLYEIHAAG--------SNNNLEARHYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCG  162 (387)
Q Consensus        92 ~l~~~g~~vl~~~p~~~~~~~~~~~--------~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG  162 (387)
                      ++.++||+|++....|.+.......        ...+.++..++++.  ++.+|+++++++++. +++++++.  ++.+|
T Consensus       119 al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~--~g~id~~~L~~~l~~~~~~lvi~~--~s~~g  194 (452)
T PTZ00094        119 ALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNE--KGLIDYDKLEELAKAFRPKLIIAG--ASAYP  194 (452)
T ss_pred             HhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccCC--CCCcCHHHHHHHHHHhCCCEEEEe--CCCCC
Confidence            9999999999988777664332210        00112334444443  357899999999854 56666543  33588


Q ss_pred             ccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCC-ccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcc
Q 038416          163 NVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPY-VPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGIL  241 (387)
Q Consensus       163 ~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~  241 (387)
                      ...|   +++|.++|+++|+++++|++|+......... .++.     ...++++|.+|+++  |.+.|++++++..  .
T Consensus       195 ~~~d---i~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~-----~~D~l~~S~hK~l~--GP~Gg~l~~~~~~--~  262 (452)
T PTZ00094        195 RDID---YKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFP-----YADVVTTTTHKSLR--GPRSGLIFYRKKV--K  262 (452)
T ss_pred             CccC---HHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCC-----CCcEEEcCCccCCC--CCCceEEEEeccc--c
Confidence            8877   7788888999999999999999644332211 1221     22388999999853  3334888876411  0


Q ss_pred             cchhHHHHHHhhh--hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEe
Q 038416          242 QNSGFVDSIKGCL--NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVK  319 (387)
Q Consensus       242 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~  319 (387)
                        +.+...+....  .+.++++.....++..+++.......++..+++.++++++.+.|++. ++.+...........+.
T Consensus       263 --~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~-g~~v~~~~~~~~~~~v~  339 (452)
T PTZ00094        263 --PDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKR-GYDLVTGGTDNHLVLVD  339 (452)
T ss_pred             --hHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhC-CcEEecCCCCCceEeec
Confidence              01111221111  11235566666677777765434456677888999999999999876 66643211112234444


Q ss_pred             cCcccccCCCcHHHHHHHHHHhcCeEEE-cCCccC----CCCeEEEEee--C----ChHhHHHHHHHHHHHHHHh
Q 038416          320 LNVSMLEDIGDDLEFCLKLAKEESVIIL-PGRTVG----MKNWLRIAFA--A----EPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~ll~~~gi~v~-~g~~~~----~~~~~Ri~~~--~----~~e~~~~~~~~l~~~~~~~  383 (387)
                      +.....    +.. .+..+++++||.+. ++..+.    .++++|++++  +    +++|++++++.|.++++..
T Consensus       340 ~~~~~~----~~~-~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~~~  409 (452)
T PTZ00094        340 LRPFGI----TGS-KMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVKLA  409 (452)
T ss_pred             CCcCCC----CHH-HHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            443211    333 44445577899995 333322    1478999993  2    4899999999999988753

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.87  E-value=2.4e-19  Score=164.21  Aligned_cols=323  Identities=14%  Similarity=0.063  Sum_probs=210.2

Q ss_pred             CCCcHHHHHHHHHHhcCC---C-----CCCCCCC--CCcHHHHHHHHHHHhhcCCCCCCCCCEE-EcCChHHHHHHHHHh
Q 038416           24 LSDSTVAEDAVVDALRTA---H-----YNCYSPT--LGVPSARRGIADYLNRDLPYKLSPEDVY-LTLGCSQAIEISLSV   92 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~---~-----~~~y~~~--~~~~~lr~~ia~~~~~~~~~~~~~~~i~-~~~g~~~a~~~~~~~   92 (387)
                      -+.|+.|++++.+.+.+.   .     .+++.+.  .-+.+.++.+++++    +.+ +..+++ ++++++.++++++..
T Consensus        12 ~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~----~~~-~~~~v~~~~gsgt~~~Ea~~~n   86 (360)
T PRK05355         12 AMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELL----NIP-DNYKVLFLQGGASLQFAMVPMN   86 (360)
T ss_pred             CCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHh----CCC-CCcEEEEEcCCchHHHHHHHHh
Confidence            368999999999986421   1     1122220  22344455555555    321 233454 557789999999999


Q ss_pred             hcCCCCeEEEcCCCCcc--hHHHhhccCCCceeeeeccCCCCCccCChhhHHH-hhccCceEEEEeCCCCCccccCCHHH
Q 038416           93 LARPGANILIPRPGYPL--YEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEA-LADENTVAIVIINPGNPCGNVFSYQH  169 (387)
Q Consensus        93 l~~~g~~vl~~~p~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~v~l~~p~nptG~~~~~~~  169 (387)
                      ++.+|+++++...+.++  +.+.++  ..|.. ..+...+..+. .+..++++ .+++++++|.+++..+.||+..+  +
T Consensus        87 l~~~g~~~l~i~~G~fg~r~~~~a~--~~g~~-~~~~~~~~~g~-~~~~~~~~~~l~~~~~~V~~th~eTstGv~~~--~  160 (360)
T PRK05355         87 LLGGGKKADYVDTGSWSKKAIKEAK--KYGEV-NVAASSEDDGF-TYIPPLDEWQLSDDAAYVHYTSNETIDGTEFH--E  160 (360)
T ss_pred             cCCCCCeEEEEECCHHHHHHHHHHH--HhCCc-eEEecccccCC-CCCCChhhccCCCCCCEEEEccCCCcceEecC--c
Confidence            99999988887766654  456777  77854 55554332332 34444444 77778999999999999999974  2


Q ss_pred             HHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccch---hH
Q 038416          170 LQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNS---GF  246 (387)
Q Consensus       170 ~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~---~~  246 (387)
                      +.++      +|+++|+|.+++.    +..+..+..+   +  +++.|.+|.+|++|  +|++++++...-.-+|   ..
T Consensus       161 i~~i------~g~l~vVDavss~----g~~~idv~~~---d--~~~~ssqK~lgP~G--lg~l~~s~~~l~~~~~~~~~~  223 (360)
T PRK05355        161 LPDT------GDVPLVADMSSDI----LSRPIDVSKF---G--LIYAGAQKNIGPAG--LTIVIVREDLLGRALPSIPSM  223 (360)
T ss_pred             cccc------CCCcEEEEcCccc----cCccCCHHHc---c--EEEEeccccccCCc--eEEEEECHHHHhhcccCCChH
Confidence            5555      7999999999985    2233333332   2  88899999998777  7888887622100001   11


Q ss_pred             HHHHH--hhhhccCCcchHHHHHHHHHhhhccHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC--CceEEEEEecC
Q 038416          247 VDSIK--GCLNAASHPVTFIQAAVPRIVDETNEA-FFAKIIGLLKETADICYERIKEIPCITCPVKP--QGAMFVMVKLN  321 (387)
Q Consensus       247 ~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~g~~~~~~~~  321 (387)
                      .+...  ......++++.....++.++|+...+. .++.+.++.++.++++++.|++++.+.....+  .....+.+.++
T Consensus       224 ~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~  303 (360)
T PRK05355        224 LDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLA  303 (360)
T ss_pred             HHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcC
Confidence            11111  111234678888888998888876666 69999999999999999999998632222111  12223444444


Q ss_pred             cccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHH
Q 038416          322 VSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       322 ~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~  382 (387)
                      ..     ....++...+ .++|+.+.+|..  ..+.+|+|+.  ++.+|++++++.|+++++.
T Consensus       304 ~~-----~~~~~~~~~~-~~~Gi~~~~~~~--~~g~vRiS~~~~nt~eei~~l~~~l~~~~~~  358 (360)
T PRK05355        304 DE-----ELDKKFLAEA-KAAGLVGLKGHR--SVGGMRASIYNAMPLEGVQALVDFMKEFERR  358 (360)
T ss_pred             Ch-----HHHHHHHHHH-HHCCCcccCCCC--ccCcEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            31     1223444444 567999866542  3478999994  5799999999999998765

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=99.87  E-value=1.9e-19  Score=151.33  Aligned_cols=351  Identities=16%  Similarity=0.166  Sum_probs=242.6

Q ss_pred             cccCCCCCCCCCCCCCC-CcHHHHHHHHHHhcCCCC-CCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEE--EcCChHH
Q 038416            9 TRHSPWPRRPLGVSLLS-DSTVAEDAVVDALRTAHY-NCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVY--LTLGCSQ   84 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~-~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~--~~~g~~~   84 (387)
                      ++.+..+|--+.+..-| ..|.|+++-.....+... ..|-+..|.+.+++..++.+-.......+.++++  =+-|||.
T Consensus        31 ~KvnL~igAYRtd~g~PWvLPvVk~~e~~i~~d~s~NHEYLpi~Gl~~F~~~A~el~lg~~s~a~kE~Rv~~vQslsGTG  110 (410)
T KOG1412|consen   31 VKVNLGIGAYRTDDGKPWVLPVVKKAEKKIANDQSLNHEYLPILGLPTFTKAATELLLGADSPAIKEDRVFGVQSLSGTG  110 (410)
T ss_pred             ceeecccceEEcCCCCeeEehhhhhhhhhccCchhccchhccccCchhhhhhhHHHhcCCCchhhhhccccceeeccccc
Confidence            45556666544444444 445555555554444322 4677778999999999998854333334455554  3567888


Q ss_pred             HHHHHHHhhc--CCCCeEEEcCCCCcchHHHhhccCCC-ceeeeeccCCCCCccCChhhHHHhhccC--ceEEEEeCC-C
Q 038416           85 AIEISLSVLA--RPGANILIPRPGYPLYEIHAAGSNNN-LEARHYDLLPEKRWEVDLDGVEALADEN--TVAIVIINP-G  158 (387)
Q Consensus        85 a~~~~~~~l~--~~g~~vl~~~p~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~v~l~~p-~  158 (387)
                      |+.+....|.  -....|.+..|+|.+......  ..| ..+..++....+...+|++.+...++.-  ..++++..+ +
T Consensus       111 Al~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if~--~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~APe~si~iLhaCAh  188 (410)
T KOG1412|consen  111 ALRIAADFLATFYNKNTVYVSNPTWENHHAIFE--KAGFTTVATYPYWDAENKCVDLEGFLSDLESAPEGSIIILHACAH  188 (410)
T ss_pred             hhhhhHHHHHHhcccceeEecCCchhHHHHHHH--HcCCceeeeeeeecCCCceecHHHHHHHHhhCCCCcEEeeecccc
Confidence            9998888874  234679999999999988888  899 4577777776667788999988877542  344455544 9


Q ss_pred             CCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc--ccccCCC-ccEEEEecCcccccccccceEEEEee
Q 038416          159 NPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP--MGVFGSI-VPVITLGSISKRWIVPGWRLGWLVTS  235 (387)
Q Consensus       159 nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~--~~~~~~~-~~~~~i~s~sK~~~~~g~r~G~i~~~  235 (387)
                      ||||.-++.+++++|+++.++.+.+.+.|-+|++|.-++.....  ++.+... ..++++.||+|.||+-+-|+|.+..-
T Consensus       189 NPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfGlYneRvGnltvv  268 (410)
T KOG1412|consen  189 NPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFGLYNERVGNLTVV  268 (410)
T ss_pred             CCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhcccccccccceEEE
Confidence            99999999999999999999999999999999998754432222  1222222 34799999999999999999986543


Q ss_pred             CCCCcccchhHHHHHHh----h-hhccCCcchHHHHHHHHHhhhcc--HHH---HHHHHHHHHHHHHHHHHHhhcC--C-
Q 038416          236 DPNGILQNSGFVDSIKG----C-LNAASHPVTFIQAAVPRIVDETN--EAF---FAKIIGLLKETADICYERIKEI--P-  302 (387)
Q Consensus       236 ~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~l~~~~--~~~---~~~~~~~~~~~~~~~~~~l~~~--~-  302 (387)
                      -     ++|..+..+..    . +...+.|+..+..++.+.|+..+  ++|   +..+..++.+.|..+++.|..+  | 
T Consensus       269 ~-----~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~MssRI~~MR~aLrd~L~aL~TPG  343 (410)
T KOG1412|consen  269 V-----NNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMSSRIKKMRTALRDHLVALKTPG  343 (410)
T ss_pred             e-----cChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            2     23334444433    2 22456788888889999988754  233   3444455556666666666554  2 


Q ss_pred             CCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe-eCChHhHHHHHHHHHHHHH
Q 038416          303 CITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF-AAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       303 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~-~~~~e~~~~~~~~l~~~~~  381 (387)
                      .|..+ ..+.|+|-+..+.          ...++.|.+++.|.+.+.+        ||++ +.+...++...++|.++++
T Consensus       344 tWDHI-~~QiGMFSyTGLt----------p~qV~~li~~h~vyLl~~G--------RInisGLN~~NveyVAkAIde~Vr  404 (410)
T KOG1412|consen  344 TWDHI-TQQIGMFSYTGLT----------PAQVDHLIENHKVYLLSDG--------RINISGLNMKNVEYVAKAIDETVR  404 (410)
T ss_pred             cHHHH-HhhccceeecCCC----------HHHHHHHHHhceEEEecCC--------cEeeeccccccHHHHHHHHHHHHH
Confidence            24433 4567888775553          3566778888899888744        8999 5788888888888888888


Q ss_pred             Hhhh
Q 038416          382 RHAK  385 (387)
Q Consensus       382 ~~~~  385 (387)
                      ....
T Consensus       405 ~~~~  408 (410)
T KOG1412|consen  405 AIKS  408 (410)
T ss_pred             hhcc
Confidence            7643

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.86  E-value=1.6e-19  Score=166.99  Aligned_cols=316  Identities=16%  Similarity=0.093  Sum_probs=202.1

Q ss_pred             CCcHH-HHHHHHHHhcCCCCCCCCC--CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcC-ChHHHHHHHHHhhcCC-CCe
Q 038416           25 SDSTV-AEDAVVDALRTAHYNCYSP--TLGVPSARRGIADYLNRDLPYKLSPEDVYLTL-GCSQAIEISLSVLARP-GAN   99 (387)
Q Consensus        25 ~~~~~-v~~a~~~~~~~~~~~~y~~--~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~-g~~~a~~~~~~~l~~~-g~~   99 (387)
                      ++++. +++++.+.....  .++++  ..-..+.|+.++++++    . .++++|++++ |+|.+++.++.++.++ ++.
T Consensus        22 ~~~~~~v~~a~~~~~~~~--~hr~~~f~~~~~~~r~~l~~l~~----~-~~~~~v~~~~gs~T~~~~~~~~~l~~~~~~~   94 (378)
T PRK03080         22 KKRPGWQLEALADALLGR--SHRQKPVKALLKRVIEGTRELLS----L-PEGYEVGIVPGSDTGAWEMALWSLLGARRVD   94 (378)
T ss_pred             CCChHHHHHHHHhhhccc--CcCCHHHHHHHHHHHHHHHHHhC----C-CCCceEEEECCchHHHHHHHHHhcCCCCcce
Confidence            46667 999988654421  13332  2334566666776662    1 1345788775 8999999999999874 444


Q ss_pred             EEEcCCCCcc-hHH-HhhccCCCc-eeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHH
Q 038416          100 ILIPRPGYPL-YEI-HAAGSNNNL-EARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIART  176 (387)
Q Consensus       100 vl~~~p~~~~-~~~-~~~~~~~g~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~  176 (387)
                      |+. .-.|.. +.. ..+  ..|. ++..++.+  .+..+|+++++    . ++.|.+++.+|.||+..|   +++|++ 
T Consensus        95 vi~-~g~f~~~~~~~~~~--~~g~~~v~~~~~~--~g~~~d~~~i~----~-~~~V~~~h~~t~tG~~~p---i~~I~~-  160 (378)
T PRK03080         95 HLA-WESFGSKWATDVVK--QLKLEDPRVLEAD--YGSLPDLSAVD----F-DRDVVFTWNGTTTGVRVP---VARWIG-  160 (378)
T ss_pred             EEE-eCHHHHHHHHHHHh--hcCCCCceEeccC--CCCCCCHhhcC----C-CCCEEEEecCCccceecc---chhhcc-
Confidence            544 334433 333 235  6788 88888763  33456666533    2 567889999999999988   566666 


Q ss_pred             HHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccc-cccceEEEEeeCCCCcccchhHHHHHHh---
Q 038416          177 ARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIV-PGWRLGWLVTSDPNGILQNSGFVDSIKG---  252 (387)
Q Consensus       177 ~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~-~g~r~G~i~~~~~~~~~~~~~~~~~~~~---  252 (387)
                       +++|+++|+|.+++.    |..+..+...     .+++.|.+|+++. +|  +|+++.++        +.++++..   
T Consensus       161 -~~~g~~~vVDa~qs~----G~~pidv~~i-----D~~~~s~~K~l~~P~G--~g~l~v~~--------~~~~~~~p~~~  220 (378)
T PRK03080        161 -ADREGLTICDATSAA----FALPLDWSKL-----DVYTFSWQKVLGGEGG--HGMAILSP--------RAVERLESYTP  220 (378)
T ss_pred             -ccCCCeEEEeccccc----ccCCCCHHHC-----cEEEEehhhhCCCCCc--eEEEEECH--------HHHHhhhcccC
Confidence             788999999999985    2223333332     3889999999753 56  78888875        33333221   


Q ss_pred             -------------------hh--hccCCcchHHHHHHHHHhhhccHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC-
Q 038416          253 -------------------CL--NAASHPVTFIQAAVPRIVDETNEA-FFAKIIGLLKETADICYERIKEIPCITCPVK-  309 (387)
Q Consensus       253 -------------------~~--~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-  309 (387)
                                         ..  ....+++.....++..+|+...+. .++.+.++.+++.+++++.+++++++..... 
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~  300 (378)
T PRK03080        221 ARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWATPLVAD  300 (378)
T ss_pred             CCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCC
Confidence                               00  112344555555556666655554 6788889999999999999998866553311 


Q ss_pred             CC--ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHhhh
Q 038416          310 PQ--GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       310 ~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      +.  ++..+.+.++... + . ...++...++++ |+.+..|......+.+|+|++  .++++++.+++.|++++++++.
T Consensus       301 ~~~~s~~i~~~~~~~~~-~-~-~~~~~~~~l~~~-~i~v~~g~~~~~~~~vRis~~~~~t~~di~~l~~al~~~~~~~~~  376 (378)
T PRK03080        301 PATRSNTSVTLDFVDAQ-A-A-VDAAAVAKLLRE-NGAVDIEPYRDAPNGLRIWCGPTVEPADVEALTPWLDWAFERLKA  376 (378)
T ss_pred             ccccCccEEEEEcCCch-H-H-HHHHHHHHHHHc-CCeeccccccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            21  2223444444200 0 0 123455556544 888877653323578999994  6899999999999999887654

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.86  E-value=2.9e-19  Score=154.26  Aligned_cols=297  Identities=18%  Similarity=0.138  Sum_probs=200.0

Q ss_pred             CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhh--ccCCCceeeee
Q 038416           49 TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAA--GSNNNLEARHY  126 (387)
Q Consensus        49 ~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~--~~~~g~~~~~~  126 (387)
                      .+....|+++||.+-+        .-..+.+++++.|+..++..++++||+|+....-|.+....+.  +...|+++..+
T Consensus        61 NPT~~vlE~RiAaLEG--------G~aa~a~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fv  132 (426)
T COG2873          61 NPTTDVLEERIAALEG--------GVAALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFV  132 (426)
T ss_pred             CchHHHHHHHHHHhhc--------chhhhhhccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhcCcEEEEe
Confidence            4577899999998763        2345667788999999999999999999999888876544333  12789998887


Q ss_pred             ccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcccccc
Q 038416          127 DLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF  206 (387)
Q Consensus       127 ~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~  206 (387)
                      +.       .|+++++++++++||+|++..-.||.+.+++   +++++++|+++++++|+|..++.-.    -..|+. .
T Consensus       133 d~-------~d~~~~~~aI~~nTkavf~EtigNP~~~v~D---ie~ia~iAh~~gvpliVDNT~atpy----l~rP~~-h  197 (426)
T COG2873         133 DP-------DDPENFEAAIDENTKAVFAETIGNPGLDVLD---IEAIAEIAHRHGVPLIVDNTFATPY----LCRPIE-H  197 (426)
T ss_pred             CC-------CCHHHHHHHhCcccceEEEEeccCCCccccC---HHHHHHHHHHcCCcEEEecCCCcce----ecchhh-c
Confidence            53       3799999999999999999999999999966   8999999999999999999988521    112221 1


Q ss_pred             CCCccEEEEecCcccccccccceEEEEeeCCCCccc-------------------------chhHHHHHHhh--hhccCC
Q 038416          207 GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQ-------------------------NSGFVDSIKGC--LNAASH  259 (387)
Q Consensus       207 ~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~-------------------------~~~~~~~~~~~--~~~~~~  259 (387)
                         +-.++++|.+|+.|..|.-+|-++.+.....+.                         ++.++-+.+..  +..+.+
T Consensus       198 ---GADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~  274 (426)
T COG2873         198 ---GADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLGAT  274 (426)
T ss_pred             ---CCCEEEEeecccccCCccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHHHHHHHHHHHhcccc
Confidence               223899999999999999999988865332111                         01111122211  223444


Q ss_pred             cchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC-----------------ceEEEEEecCc
Q 038416          260 PVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ-----------------GAMFVMVKLNV  322 (387)
Q Consensus       260 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----------------~g~~~~~~~~~  322 (387)
                      .+|+....+..-++     -+.-+.++..+|+..+.+-|++.|.+..+.+|.                 .|-.+.+.+..
T Consensus       275 lsPfnAfl~lqGlE-----TL~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL~~~~~h~la~kyl~~g~g~vltF~~kg  349 (426)
T COG2873         275 LSPFNAFLLLQGLE-----TLSLRMERHCENALKVAEFLENHPKVAWVNYPGLASHPYHALAKKYLPKGAGAVLTFGVKG  349 (426)
T ss_pred             cCcHHHHHHHhchh-----hhHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCCCCCcchhHHHhhccCCCceEEEEEecC
Confidence            55554444444333     377788999999999999999988776555542                 23333433332


Q ss_pred             ccccCCCcHHHHHHHH-----HHhc----CeEEEcCCccCC-------------CCeEEEEeeCChHhHHHHHHHHHHHH
Q 038416          323 SMLEDIGDDLEFCLKL-----AKEE----SVIILPGRTVGM-------------KNWLRIAFAAEPATLEDGLERIKAFC  380 (387)
Q Consensus       323 ~~~~~~~~~~~~~~~l-----l~~~----gi~v~~g~~~~~-------------~~~~Ri~~~~~~e~~~~~~~~l~~~~  380 (387)
                      .    ......+++.|     +.+-    -+.+-|.+.-+.             ++.+|+|+++  |+++.++..|++++
T Consensus       350 g----~ea~~~fi~~l~L~s~laNvGD~rsLvIHPAsTTH~ql~~ee~~~aGv~~~~IRlSVGI--Ed~~DiiaDl~qAl  423 (426)
T COG2873         350 G----YEAGKKFIDALKLFSHLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTPDLIRLSVGI--EDIDDIIADLEQAL  423 (426)
T ss_pred             h----HHHHHHHHHHHHHHHhhccccccceeEecCcccchhcCCHHHHHhcCCCCCcEEEEecc--CCHHHHHHHHHHHH
Confidence            1    01122333332     0111    122224322211             4689999999  78888888888877


Q ss_pred             HH
Q 038416          381 QR  382 (387)
Q Consensus       381 ~~  382 (387)
                      ++
T Consensus       424 ~~  425 (426)
T COG2873         424 EA  425 (426)
T ss_pred             hc
Confidence            64

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.86  E-value=3.8e-19  Score=178.59  Aligned_cols=302  Identities=14%  Similarity=0.067  Sum_probs=202.4

Q ss_pred             CcHHHHHHHHHHHhhcCCCCCCCC--CEEEcCChHHHHHHHHHhh-cCCCCeEEEcCCCCcchH---HHhhccCCCceee
Q 038416           51 GVPSARRGIADYLNRDLPYKLSPE--DVYLTLGCSQAIEISLSVL-ARPGANILIPRPGYPLYE---IHAAGSNNNLEAR  124 (387)
Q Consensus        51 ~~~~lr~~ia~~~~~~~~~~~~~~--~i~~~~g~~~a~~~~~~~l-~~~g~~vl~~~p~~~~~~---~~~~~~~~g~~~~  124 (387)
                      ...+.|+.+++++      +++++  .|++|+|+|++++.++.++ .++||+|++..-.|.+..   ..++  ..|+++.
T Consensus        79 ~~e~aR~~ia~~l------ga~~~~~~VvFtsnaT~alnlva~~l~~~~gd~Iv~t~~eH~svl~~~~~a~--~~G~~v~  150 (805)
T PLN02724         79 TIESARQQVLEYF------NAPPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVLGIREYAL--EKGAAAI  150 (805)
T ss_pred             HHHHHHHHHHHHh------CCCccceEEEEeCChHHHHHHHHHHCCCCCCCeEEEeeccccchHHHHHHHH--HcCCeEE
Confidence            3567788888888      34444  5899999999999999998 578999999877776543   3444  5788998


Q ss_pred             eeccCCC------CCccCCh--hhHHHhh----------ccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhc-----C
Q 038416          125 HYDLLPE------KRWEVDL--DGVEALA----------DENTVAIVIINPGNPCGNVFSYQHLQKIARTARNL-----G  181 (387)
Q Consensus       125 ~~~~~~~------~~~~~~~--~~l~~~~----------~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~-----~  181 (387)
                      .++++..      ....+++  +++++.+          .+++++|.+++.+|-||..+|.+.+.++.+.++.+     +
T Consensus       151 ~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~  230 (805)
T PLN02724        151 AVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGR  230 (805)
T ss_pred             eccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcc
Confidence            8887521      1112332  5566543          24568999999999999999976554444433322     3


Q ss_pred             cEEeecccccccccCCCCCccccccCCCccEEEEecCccccc-ccccceEEEEeeCCCCcccchhHHHHHHhh-------
Q 038416          182 IIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWI-VPGWRLGWLVTSDPNGILQNSGFVDSIKGC-------  253 (387)
Q Consensus       182 ~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~-~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~-------  253 (387)
                      +++++|.+++.    ++.+..+..++.+   +++.|++|++| ..|  +|++++++.        +.+.+...       
T Consensus       231 ~~v~vDaaQ~~----g~~piDv~~~~~D---fl~~S~HK~~GgP~G--~G~L~vr~~--------~~~~l~p~~~GGg~~  293 (805)
T PLN02724        231 WMVLLDAAKGC----GTSPPDLSRYPAD---FVVVSFYKIFGYPTG--LGALLVRRD--------AAKLLKKKYFGGGTV  293 (805)
T ss_pred             eEEEeehhhhc----CCCCCChhhcCCC---EEEEecceeccCCCC--ceEEEEehh--------hhhhhcCCccCCCce
Confidence            68999999985    4444455555555   89999999987 445  788888752        22222110       


Q ss_pred             ------------------hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCC------CCCCCCC
Q 038416          254 ------------------LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIP------CITCPVK  309 (387)
Q Consensus       254 ------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~  309 (387)
                                        +.-.++++..+..++.++++...+-.++++.++...+.+++.+.|++++      ++.+. .
T Consensus       294 ~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iy-g  372 (805)
T PLN02724        294 AASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLY-G  372 (805)
T ss_pred             EEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEc-C
Confidence                              0113466677777777777765555677888888899999999998875      35433 2


Q ss_pred             CC--------ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC---------------------------
Q 038416          310 PQ--------GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM---------------------------  354 (387)
Q Consensus       310 ~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---------------------------  354 (387)
                      +.        -+..+.+.+....  +..-....+..++..+||.++.|..|..                           
T Consensus       373 ~~~~~~~~~~r~~ivsFnv~~~~--~~~v~~~~v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~  450 (805)
T PLN02724        373 NHTFKLEFHIQGPIVTFNLKRAD--GSWVGHREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDD  450 (805)
T ss_pred             CCCCCCCcccccCEEEEEEEcCC--CCEeCHHHHHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCch
Confidence            21        1223333332211  0001123455677788999999877641                           


Q ss_pred             --------CCeEEEEee--CChHhHHHHHHHHHHHH
Q 038416          355 --------KNWLRIAFA--AEPATLEDGLERIKAFC  380 (387)
Q Consensus       355 --------~~~~Ri~~~--~~~e~~~~~~~~l~~~~  380 (387)
                              .+.+|+|++  .+.+|++++++.|++..
T Consensus       451 ~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~  486 (805)
T PLN02724        451 QDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSF  486 (805)
T ss_pred             hheecCcccceEEEEcCccCCHHHHHHHHHHHHHHh
Confidence                    267999995  58999999999998865

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.86  E-value=8.6e-19  Score=156.89  Aligned_cols=341  Identities=15%  Similarity=0.094  Sum_probs=222.5

Q ss_pred             cccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHH
Q 038416            7 QETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI   86 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~   86 (387)
                      .+.|++.+.++--..... .+|.|.+|+++++++..  .|+.+   .+++-.+|+.+.++.+   ..+.|-+++++|+|.
T Consensus        52 Gn~YIDy~~~~Gp~ilGH-~~p~V~~Av~~~l~~G~--~fg~P---te~Ei~~Aell~~~~p---~~e~vrfvnSGTEAt  122 (432)
T COG0001          52 GNEYIDYVLGWGPLILGH-AHPAVVEAVQEQLERGL--SFGAP---TELEVELAELLIERVP---SIEKVRFVNSGTEAT  122 (432)
T ss_pred             CCEeeehhccCcccccCC-CCHHHHHHHHHHHHhcC--CCCCC---CHHHHHHHHHHHHhcC---cccEEEEecchhHHH
Confidence            346677666653233222 56679999999999874  35443   2566677777766443   448999999999999


Q ss_pred             HHHHHhhc--CCCCeEEEcCCCCcchHHHhhccCCC--ce-----------------eeeeccCCCCCccCChhhHHHhh
Q 038416           87 EISLSVLA--RPGANILIPRPGYPLYEIHAAGSNNN--LE-----------------ARHYDLLPEKRWEVDLDGVEALA  145 (387)
Q Consensus        87 ~~~~~~l~--~~g~~vl~~~p~~~~~~~~~~~~~~g--~~-----------------~~~~~~~~~~~~~~~~~~l~~~~  145 (387)
                      ..+++...  ...|+|+.++-||++..+.+.. ..|  ..                 +..+|.   +    |++++++++
T Consensus       123 msAiRlARa~TgR~kIikF~G~YHG~~D~~lv-~agsg~~t~g~p~s~Gvp~~~a~~ti~~~y---N----D~~al~~~~  194 (432)
T COG0001         123 MSAIRLARAYTGRDKIIKFEGCYHGHSDSLLV-KAGSGAATLGSPSSPGVPADVAKHTLVLPY---N----DLEALEEAF  194 (432)
T ss_pred             HHHHHHHHHhhCCCeEEEEcCCCCCCccHHHh-hcCcCcccCCCCCCCCCChhhhccEEEecC---C----CHHHHHHHH
Confidence            99998864  2348999999999986655441 111  11                 111121   1    789999988


Q ss_pred             ccC--ceEEEEeCC-CCCccc-cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCccc
Q 038416          146 DEN--TVAIVIINP-GNPCGN-VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKR  221 (387)
Q Consensus       146 ~~~--~~~v~l~~p-~nptG~-~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~  221 (387)
                      ++.  ..+.+|+.| ....|. .+.+++++.|.++|+++|+++|.||+..+|...-.+......+.+|     +.++.|.
T Consensus       195 ~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~PD-----lttlGKi  269 (432)
T COG0001         195 EEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVEPD-----LTTLGKI  269 (432)
T ss_pred             HHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccCcCcc-----hhhhhhh
Confidence            764  455577777 333555 5666679999999999999999999999887652233333344444     6688999


Q ss_pred             ccccccceEEEEeeCCCCcccchhHHHHHHhh----hhccCCcchHHHHHHHHHhhhccH--HHHHHHHHHHHHHHHHHH
Q 038416          222 WIVPGWRLGWLVTSDPNGILQNSGFVDSIKGC----LNAASHPVTFIQAAVPRIVDETNE--AFFAKIIGLLKETADICY  295 (387)
Q Consensus       222 ~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~  295 (387)
                       ...|+++|.+-+++        ++.+.+...    ...+.+.++.+..+..+.++...+  ...++..+.-.+.++-+.
T Consensus       270 -IGGGlP~ga~gGr~--------eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~  340 (432)
T COG0001         270 -IGGGLPIGAFGGRA--------EIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLR  340 (432)
T ss_pred             -hcCCcceeeeccHH--------HHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence             57899999999876        777766432    235667888888888888876443  234445555555555555


Q ss_pred             HHhhcCCCCCCCCCCCceEEEEEecCcccccCCC--------cHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChH
Q 038416          296 ERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIG--------DDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPA  367 (387)
Q Consensus       296 ~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--------~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e  367 (387)
                      +.+++. ++.......+++| -+.|.......+.        ....+...++ ++||.+.|+.+    ...=+|..++++
T Consensus       341 ~~~~~~-g~~~~v~~~gsm~-~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l-~~GV~l~ps~~----ea~flS~ahte~  413 (432)
T COG0001         341 AAAERH-GIPLTVNRVGSMF-GIFFTEEGVRNYADAKRSDVERFAKFFHHLL-NRGVYLAPSQF----EAGFLSTAHTEE  413 (432)
T ss_pred             HHHHHh-CCCeEEeeecceE-EEEecCCCCCCHHHHHhhchHHHHHHHHHHH-hCCcccCCccc----cceeeecccCHH
Confidence            666655 5553323333333 3333321111111        1124555554 55999998642    334577788999


Q ss_pred             hHHHHHHHHHHHHHHhhh
Q 038416          368 TLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       368 ~~~~~~~~l~~~~~~~~~  385 (387)
                      +|++.++.+.++++++.+
T Consensus       414 di~~~~~a~~~~~~~~~~  431 (432)
T COG0001         414 DIDRTLEAADEAFKELAG  431 (432)
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            999999999999887654

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.86  E-value=2.6e-18  Score=153.98  Aligned_cols=318  Identities=19%  Similarity=0.199  Sum_probs=212.8

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh-cCCCCeEEEcC
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL-ARPGANILIPR  104 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~g~~vl~~~  104 (387)
                      ....-.+++.+.+..+.... ++  -..++++.+++|+        ...+.+.++++|.|+.+++++| +++||.|+++.
T Consensus        13 i~~~e~~~v~~vl~sg~i~~-G~--~v~~FE~~~ae~~--------G~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps   81 (374)
T COG0399          13 IGEEELAAVQEVLKSGWLTG-GP--FVRRFEQAFAEYL--------GVKYAVAVSSGTAALHLALLALAIGPGDEVIVPS   81 (374)
T ss_pred             cchHHHHHHHHHHHcCCeec-Ch--HHHHHHHHHHHHh--------CCCeEEEecChHHHHHHHHHhcCCCCCCEEEecC
Confidence            56788889999998765533 33  4579999999999        5578999999999999999976 59999999999


Q ss_pred             CCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEE
Q 038416          105 PGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIV  184 (387)
Q Consensus       105 p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~l  184 (387)
                      -+|......+.  ..|++++.++++++ .+.+|++.+|+++.++||+|+.++-   -|...   ++.+|.++|++||++|
T Consensus        82 ~TfvATan~i~--~~Ga~PVFvDid~~-T~nid~~~ie~aIt~~tKAIipVhl---~G~~~---dm~~i~~la~~~~l~v  152 (374)
T COG0399          82 FTFVATANAVL--LVGAKPVFVDIDPD-TLNIDPDLIEAAITPRTKAIIPVHL---AGQPC---DMDAIMALAKRHGLPV  152 (374)
T ss_pred             CchHHHHHHHH--HcCCeEEEEecCCc-ccCCCHHHHHHHcccCCeEEEEehh---ccCCC---CHHHHHHHHHHcCCeE
Confidence            99999998989  99999999999764 4679999999999999999997764   45553   4889999999999999


Q ss_pred             eecccccccc-cCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhhccCCcc--
Q 038416          185 IADEVYNHLA-FGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPV--  261 (387)
Q Consensus       185 i~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  261 (387)
                      |+|.+++... |.|+....+..       +.+.||.-.-.++..-.|.+++++       +++.++++..+..+....  
T Consensus       153 IEDaAqa~Ga~y~gk~vGt~Gd-------~~~fSF~~~K~ittgEGGav~tnd-------~ela~k~~~lr~hG~~~~~~  218 (374)
T COG0399         153 IEDAAQAHGATYKGKKVGSFGD-------IGAFSFHATKNLTTGEGGAVVTND-------EELAEKARSLRNHGLSRDAV  218 (374)
T ss_pred             EEEcchhccCeecCcccccccc-------eEEEEecCCCCccccCceEEEeCC-------HHHHHHHHHHHHhCcCCCcc
Confidence            9999999533 55553333322       445566533333333557777765       578888877654322210  


Q ss_pred             ----------hHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEE----EecCcccccC
Q 038416          262 ----------TFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVM----VKLNVSMLED  327 (387)
Q Consensus       262 ----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~  327 (387)
                                +.-..-+.+++....-+.++++.++-++..+...+.|++++++.....+......|    +.++..    
T Consensus       219 ~~y~~~~~G~N~rm~~iqAAigl~QL~~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~~~~----  294 (374)
T COG0399         219 FKYLHEELGYNYRLTEIQAAIGLAQLERLDEINERRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILVDEE----  294 (374)
T ss_pred             ccceeeecccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCceeeeeeeEEEecCC----
Confidence                      00011111111111224567777777778888888888887666443343322222    223321    


Q ss_pred             CCcHHHHHHHHHHhcCeE----EEcCCcc--------C----C-------CCeEEEEe--eCChHhHHHHHHHHHHHHHH
Q 038416          328 IGDDLEFCLKLAKEESVI----ILPGRTV--------G----M-------KNWLRIAF--AAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       328 ~~~~~~~~~~ll~~~gi~----v~~g~~~--------~----~-------~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~  382 (387)
                      ..+-..+.. .+++.||.    ..|-..+        .    .       ...+.+-+  ..+++++++.++.|++++.+
T Consensus       295 ~~~R~~l~~-~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~~~~~  373 (374)
T COG0399         295 GISRDALME-SLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEVLGS  373 (374)
T ss_pred             CCCHHHHHH-HHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHHHHHhcc
Confidence            012234444 45777554    3342111        0    0       13455555  45889999999999888753

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.86  E-value=3.1e-20  Score=166.16  Aligned_cols=225  Identities=18%  Similarity=0.162  Sum_probs=155.0

Q ss_pred             CcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCC
Q 038416           51 GVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLP  130 (387)
Q Consensus        51 ~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~  130 (387)
                      -..++++.+|++++      . .+.+++++|+++++..++.+++++||+|+++.++|.++...+.  ..|.++++++...
T Consensus        60 ~i~~~~~~~A~~~g------a-~~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~~--~~g~~~~~v~~~~  130 (294)
T cd00615          60 PIKEAQELAARAFG------A-KHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLV--LSGAVPVYLKPER  130 (294)
T ss_pred             HHHHHHHHHHHHhC------C-CCEEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHH--HCCCEEEEecCcc
Confidence            46788889999883      2 2344559999999999999999999999999999999888888  8899988887654


Q ss_pred             CCC----ccCChhhHHHhhc--cCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccc-cccCCCCCccc
Q 038416          131 EKR----WEVDLDGVEALAD--ENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNH-LAFGSTPYVPM  203 (387)
Q Consensus       131 ~~~----~~~~~~~l~~~~~--~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~-~~~~~~~~~~~  203 (387)
                      ..+    ..+|+++++++++  ++++++++++| |++|.+++   +++|+++|+++|+++|+|++|+. +.+.+......
T Consensus       131 ~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~d---l~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~  206 (294)
T cd00615         131 NPYYGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYN---LRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSA  206 (294)
T ss_pred             CcccCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecC---HHHHHHHHHhcCCeEEEECcchhhhccCcccCcch
Confidence            333    3689999999985  46789999998 68999987   88999999999999999999974 33333212111


Q ss_pred             cccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhh--ccCCcchHHHHHHHHHhhhccHHHHH
Q 038416          204 GVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLN--AASHPVTFIQAAVPRIVDETNEAFFA  281 (387)
Q Consensus       204 ~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~  281 (387)
                      .   ..+..+++.|++|+  ++|++.|+++..+.. ..    ..+++.....  .+.+++.....++..++.... ..-.
T Consensus       207 ~---~~~~div~~S~hK~--l~g~~~~~~l~~~~~-~~----~~~~~~~~~~~~~ttsps~~~~asl~~a~~~~~-~~g~  275 (294)
T cd00615         207 A---MAGADIVVQSTHKT--LPALTQGSMIHVKGD-LV----NPDRVNEALNLHQSTSPSYLILASLDVARAMMA-LEGK  275 (294)
T ss_pred             h---hcCCcEEEEchhcc--cchHhHHHHHHhCCC-cC----CHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHH-HHhH
Confidence            1   12446999999998  467766555433211 11    1223333221  234556656566655554321 1223


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 038416          282 KIIGLLKETADICYERIK  299 (387)
Q Consensus       282 ~~~~~~~~~~~~~~~~l~  299 (387)
                      +..++..++.+.+++.|.
T Consensus       276 ~~~~~~~~~~~~~r~~l~  293 (294)
T cd00615         276 ELVEELIELALYARQEIN  293 (294)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            445556666666666554

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.86  E-value=4.3e-18  Score=159.42  Aligned_cols=295  Identities=16%  Similarity=0.140  Sum_probs=186.5

Q ss_pred             cHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh---------cCCCCeEEEcCCCCcchHHHhhccCCCce
Q 038416           52 VPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL---------ARPGANILIPRPGYPLYEIHAAGSNNNLE  122 (387)
Q Consensus        52 ~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l---------~~~g~~vl~~~p~~~~~~~~~~~~~~g~~  122 (387)
                      ..++++.++++++        .+++++++|+++++..++.++         +++||+|+++.++|..+...+.  ..|.+
T Consensus        65 ~~~fe~~lA~~~g--------~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~--~~G~~  134 (438)
T PRK15407         65 NDAFEKKLAEFLG--------VRYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPII--QNGLV  134 (438)
T ss_pred             HHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHH--HcCCE
Confidence            5789999999983        357899999999999999876         3789999999999999998888  89999


Q ss_pred             eeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccc-cCCCCCc
Q 038416          123 ARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLA-FGSTPYV  201 (387)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~-~~~~~~~  201 (387)
                      ++.+++++ .++.+|++.+++++++++++|+++++   +|..   .++++|.++|+++|++||+|++++... +.|....
T Consensus       135 pv~vdvd~-~~~~id~~~le~~i~~~tkaVi~~~~---~G~p---~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G  207 (438)
T PRK15407        135 PVFVDVEL-PTYNIDASLLEAAVSPKTKAIMIAHT---LGNP---FDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTG  207 (438)
T ss_pred             EEEEecCC-CcCCcCHHHHHHHcCcCCeEEEEeCC---CCCh---hhHHHHHHHHHHCCCEEEEECccchhhhcCCeeee
Confidence            99988764 35688999999999889999998875   4543   458999999999999999999998533 3333222


Q ss_pred             cccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhhccCC----------------------
Q 038416          202 PMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASH----------------------  259 (387)
Q Consensus       202 ~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------  259 (387)
                         .+. +   +.+.||+....+.....|++++++       +++.+.++.....+..                      
T Consensus       208 ---~~g-d---~~~fSf~~~k~~~~geGG~l~t~d-------~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~  273 (438)
T PRK15407        208 ---TFG-D---IATLSFYPAHHITMGEGGAVFTND-------PLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGEL  273 (438)
T ss_pred             ---ccC-c---eEEEeCCCCCCccccCceEEEECC-------HHHHHHHHHHHHhCcccccccccccccccccccccccc
Confidence               222 1   556666643223323358888876       3455555443321110                      


Q ss_pred             -------------cchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCCCCCc---eEEE-EEecC
Q 038416          260 -------------PVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPC-ITCPVKPQG---AMFV-MVKLN  321 (387)
Q Consensus       260 -------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~---g~~~-~~~~~  321 (387)
                                   ..+.-..-+.+++....-..++++.++-+++++++.+.|.++++ +.....+.+   .++. .+.++
T Consensus       274 ~~~~~~~~~~~~~G~n~rmsel~AAig~~qL~~l~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~  353 (438)
T PRK15407        274 PFGYDHKYTYSHLGYNLKITDMQAAIGLAQLEKLPGFIEARKANFAYLKEGLASLEDFLILPEATPNSDPSWFGFPITVK  353 (438)
T ss_pred             cccccccccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCcCCCCCeeEEEEEEEEEC
Confidence                         00000000111111111234666777777777888888887764 322212222   2222 22333


Q ss_pred             cccccCCCcHHHHHHHHHHhcCeEEEcCCc--cCC----------------------CCeEEEEe--eCChHhHHHHHHH
Q 038416          322 VSMLEDIGDDLEFCLKLAKEESVIILPGRT--VGM----------------------KNWLRIAF--AAEPATLEDGLER  375 (387)
Q Consensus       322 ~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~--~~~----------------------~~~~Ri~~--~~~~e~~~~~~~~  375 (387)
                      ...  + .+-.++...| +++||.+.+...  ...                      ...+-+-+  ..++++++..++.
T Consensus       354 ~~~--~-~~Rd~l~~~L-~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~~~l~~~~v~~i~~~  429 (438)
T PRK15407        354 EDA--G-FTRVELVKYL-EENKIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGVYPGLTEEMLDYVIEK  429 (438)
T ss_pred             CcC--C-CCHHHHHHHH-HHCCCCccccCCCccccChhhhhcCCCCCCCChHHHHHHhCeEEecCCCCCCHHHHHHHHHH
Confidence            210  1 1345666666 667997654321  000                      11222222  2478999999999


Q ss_pred             HHHHHH
Q 038416          376 IKAFCQ  381 (387)
Q Consensus       376 l~~~~~  381 (387)
                      |+++++
T Consensus       430 i~~~~~  435 (438)
T PRK15407        430 IEEFFG  435 (438)
T ss_pred             HHHHHh
Confidence            988775

>PRK02769 histidine decarboxylase; Provisional

Probab=99.85  E-value=5.9e-18  Score=155.25  Aligned_cols=289  Identities=12%  Similarity=0.067  Sum_probs=200.8

Q ss_pred             cHHHHHHHHHHHhhcCCCCCCCCC--EEEcCChHHHHHHHHHhhc--CCCCeEEEcCCCCcchHHHhhccCCCceeeeec
Q 038416           52 VPSARRGIADYLNRDLPYKLSPED--VYLTLGCSQAIEISLSVLA--RPGANILIPRPGYPLYEIHAAGSNNNLEARHYD  127 (387)
Q Consensus        52 ~~~lr~~ia~~~~~~~~~~~~~~~--i~~~~g~~~a~~~~~~~l~--~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~  127 (387)
                      ..++++.+.+++.+.++.  ++++  .++|+|+|+++..++....  .+++.|+++.-.|+++...++  .+|.+...++
T Consensus        63 ~~~~e~~~~~~~a~l~g~--~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~--~lg~~~~~V~  138 (380)
T PRK02769         63 SFDFERDVMNFFAELFKI--PFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIAR--LLRIKSRVIT  138 (380)
T ss_pred             hHHHHHHHHHHHHHHhCC--CCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHH--HcCCCCceec
Confidence            456666666666666654  3334  4789999999887765542  467899999999999999999  8999888888


Q ss_pred             cCCCCCccCChhhHHHhhccC---ceEEEEeCCCCCccccCCHHHHHHHHHHHHhcC---cEEeecccccccccCCCCC-
Q 038416          128 LLPEKRWEVDLDGVEALADEN---TVAIVIINPGNPCGNVFSYQHLQKIARTARNLG---IIVIADEVYNHLAFGSTPY-  200 (387)
Q Consensus       128 ~~~~~~~~~~~~~l~~~~~~~---~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~---~~li~D~~~~~~~~~~~~~-  200 (387)
                      .++  ++.+|+++|+++++++   +.+|+++.++|+||.+-|   +++|+++|+++|   +++++|.+++.+...-... 
T Consensus       139 ~~~--~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idp---i~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~  213 (380)
T PRK02769        139 SLP--NGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDN---IKEIQEILKKIGIDDYYIHADAALSGMILPFVNNP  213 (380)
T ss_pred             cCC--CCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCC---HHHHHHHHHHhCCCceEEEEEecccceeecccCcc
Confidence            753  4579999999999876   889999999999999966   888888999998   6999999999754321100 


Q ss_pred             ccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHh---h---h--hccCCcchHHHHHHHHHh
Q 038416          201 VPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKG---C---L--NAASHPVTFIQAAVPRIV  272 (387)
Q Consensus       201 ~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~---~---~--~~~~~~~~~~~~~~~~~l  272 (387)
                      .++ .+.. .-..+..|.+|+++ ....+|+++.++        +..+.+..   +   .  ...++.+.....++...|
T Consensus       214 ~~~-d~~~-~vDsis~s~HK~~~-~P~g~G~l~~r~--------~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL  282 (380)
T PRK02769        214 PPF-SFAD-GIDSIAISGHKFIG-SPMPCGIVLAKK--------KYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAI  282 (380)
T ss_pred             ccC-CccC-CCCEEEECCcccCC-CCCCcEEEEEeh--------hhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHH
Confidence            011 1111 12366779999965 235589999886        23333211   1   0  112233444556666666


Q ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCcc
Q 038416          273 DETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTV  352 (387)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~  352 (387)
                      .......+.+..++..++++++.+.|++. +++.+..|... .+.++.+        + .++    .  +|..+.+-   
T Consensus       283 ~~lg~~G~~~~~~~~~~la~~l~~~L~~~-g~~~~~~p~~~-~v~f~~~--------~-~~~----~--~~w~l~~~---  342 (380)
T PRK02769        283 RSLGSKGLRQRVQHCLDMAQYAVDRLQAN-GIPAWRNPNSI-TVVFPCP--------S-ERI----W--KKWHLATS---  342 (380)
T ss_pred             HHHCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEEcCCCce-EEEEcCC--------C-HHH----H--hCeeEccc---
Confidence            66667788999999999999999999886 77767566543 3333322        2 122    1  36555543   


Q ss_pred             CCCCeEEEEe--eCChHhHHHHHHHHHHHHHH
Q 038416          353 GMKNWLRIAF--AAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       353 ~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~  382 (387)
                        ..++||++  ..+++.++..++.|.+.++.
T Consensus       343 --~~~~hi~~~~~~~~~~~~~f~~dl~~~~~~  372 (380)
T PRK02769        343 --GNQAHIITMPHHNKQQIDSLIDELIFDLKN  372 (380)
T ss_pred             --CCEEEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence              35899999  45788999999998877663

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.85  E-value=8.7e-19  Score=161.47  Aligned_cols=307  Identities=22%  Similarity=0.288  Sum_probs=200.6

Q ss_pred             cHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh-cCCCCeEEEcCC
Q 038416           27 STVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL-ARPGANILIPRP  105 (387)
Q Consensus        27 ~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~g~~vl~~~p  105 (387)
                      ..+-.+++.+.++.+....++  ....++++.+++|+        +...++.++++|.|+.+++.++ +++||.|+++..
T Consensus         4 ~~e~~~~v~~~l~s~~~~~~g--~~~~~fE~~~a~~~--------g~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~   73 (363)
T PF01041_consen    4 TEEEIDAVLEVLRSGWLSTYG--PYVEEFEKEFAEYF--------GVKYAVAVSSGTSALHLALRALGLGPGDEVIVPAY   73 (363)
T ss_dssp             HHHHHHHHHHHHHHTCCSSSS--HHHHHHHHHHHHHH--------TSSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESS
T ss_pred             CHHHHHHHHHHHHhCCccCCC--HHHHHHHHHHHHHh--------CCCeEEEeCChhHHHHHHHHhcCCCcCceEecCCC
Confidence            355677788888776443333  35689999999999        4579999999999999999998 589999999999


Q ss_pred             CCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEe
Q 038416          106 GYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVI  185 (387)
Q Consensus       106 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li  185 (387)
                      +|..+...+.  ..|++++.++++++ .+.+|++.+++++++++++|++++.   .|..   .++.+|.++|+++|++||
T Consensus        74 t~~~~~~ai~--~~G~~pv~~Di~~~-~~~id~~~~~~~i~~~t~ai~~~h~---~G~~---~d~~~i~~~~~~~~i~lI  144 (363)
T PF01041_consen   74 TFPATASAIL--WAGAEPVFVDIDPE-TLNIDPEALEKAITPKTKAILVVHL---FGNP---ADMDAIRAIARKHGIPLI  144 (363)
T ss_dssp             S-THHHHHHH--HTT-EEEEE-BETT-TSSB-HHHHHHHHHTTEEEEEEE-G---GGB------HHHHHHHHHHTT-EEE
T ss_pred             cchHHHHHHH--HhccEEEEEeccCC-cCCcCHHHHHHHhccCccEEEEecC---CCCc---ccHHHHHHHHHHcCCcEE
Confidence            9999999999  99999999999754 5689999999999999999998774   4555   359999999999999999


Q ss_pred             ecccccccc-cCCCCCccccccCCCccEEEEecCc--ccccccccceEEEEeeCCCCcccchhHHHHHHhhhhcc-----
Q 038416          186 ADEVYNHLA-FGSTPYVPMGVFGSIVPVITLGSIS--KRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAA-----  257 (387)
Q Consensus       186 ~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~s~s--K~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~-----  257 (387)
                      +|.+++... +.|..   +..+.    .+.+.||+  |.+  +....|.+++++       +++.++++.....+     
T Consensus       145 eD~a~a~g~~~~g~~---~G~~g----d~~~fSf~~~K~i--~~geGG~v~~~~-------~~~~~~~~~~~~~g~~~~~  208 (363)
T PF01041_consen  145 EDAAQAFGARYKGRP---VGSFG----DIAIFSFHPTKII--TTGEGGAVVTND-------PELAERARALRNHGRSRDA  208 (363)
T ss_dssp             EE-TTTTT-EETTEE---TTSSS----SEEEEESSTTSSS---SSS-EEEEEST-------HHHHHHHHHHTBTTEETSE
T ss_pred             EccccccCceeCCEe---ccCCC----CceEecCCCCCCC--cCCCCeeEEecH-------HHHHHHhhhhhccCcCccc
Confidence            999999643 33322   22222    26677875  664  444458888865       46777777654322     


Q ss_pred             -------------CCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCce----E-EEEEe
Q 038416          258 -------------SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGA----M-FVMVK  319 (387)
Q Consensus       258 -------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g----~-~~~~~  319 (387)
                                   +.++.+..+.+..-|     ..+++..++-+++.+.+.+.|.+++++.....+...    + .+.+.
T Consensus       209 ~~~~~~~~~~g~n~rm~~~~AAigl~QL-----~~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~  283 (363)
T PF01041_consen  209 FRRYRHELPPGYNFRMSELQAAIGLAQL-----KRLDEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIR  283 (363)
T ss_dssp             CSTTEESSSS--B-B-BHHHHHHHHHHH-----HTHHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEE
T ss_pred             cccccccccCCcccccHHHHHHHHHHHH-----HHhhhhHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccc
Confidence                         112222222222223     336777777888888899999998776433222221    1 12223


Q ss_pred             cCcccccCCCcHHHHHHHHHHhcCeEEEcCCc--cC------C----------------CCeEEEEe--eCChHhHHHHH
Q 038416          320 LNVSMLEDIGDDLEFCLKLAKEESVIILPGRT--VG------M----------------KNWLRIAF--AAEPATLEDGL  373 (387)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~--~~------~----------------~~~~Ri~~--~~~~e~~~~~~  373 (387)
                      ++....   .+-.++...| ++.||.+.+...  ..      .                ...+-+-+  ..++++++..+
T Consensus       284 ~~~~~~---~~rd~l~~~L-~~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~  359 (363)
T PF01041_consen  284 LPDEAL---ADRDELVEAL-RARGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIA  359 (363)
T ss_dssp             ETCCGC---STHHHHHHHH-HHTTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHH
T ss_pred             cccccc---chHHHHHHHH-HHCCCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHh
Confidence            332110   1334565555 677999987652  11      0                12344444  35788888888


Q ss_pred             HHHH
Q 038416          374 ERIK  377 (387)
Q Consensus       374 ~~l~  377 (387)
                      +.|+
T Consensus       360 ~~ir  363 (363)
T PF01041_consen  360 EAIR  363 (363)
T ss_dssp             HHHH
T ss_pred             hccC
Confidence            8764

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PLN02590 probable tyrosine decarboxylase

Probab=99.85  E-value=2.2e-18  Score=163.18  Aligned_cols=351  Identities=10%  Similarity=0.044  Sum_probs=222.9

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCC-----CCCEEEcCChHHHHHHHHHhhcC----
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLS-----PEDVYLTLGCSQAIEISLSVLAR----   95 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~-----~~~i~~~~g~~~a~~~~~~~l~~----   95 (387)
                      +.++.+...+....-+.....|...+...++++.+.+|+.+.++.+..     ...-++++|+|+++..++.+...    
T Consensus       141 ~~~~~~lgd~l~sa~n~~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~  220 (539)
T PLN02590        141 TSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILK  220 (539)
T ss_pred             CcHHHHHHHHHHHhcccccCCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHh
Confidence            344444444444333433445555667889999999999998886632     13457789999988887766432    


Q ss_pred             -------CCCeEEEcCCCCcchHHHhhccCCCc---eeeeeccCCCCCccCChhhHHHhhccC------ceEEEEeCCCC
Q 038416           96 -------PGANILIPRPGYPLYEIHAAGSNNNL---EARHYDLLPEKRWEVDLDGVEALADEN------TVAIVIINPGN  159 (387)
Q Consensus        96 -------~g~~vl~~~p~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~n  159 (387)
                             +.-.|.+++.+|+++...+.  ..|+   .++.+|++..+++.+|+++|+++++..      +.+|+-+..+.
T Consensus       221 ~~g~~~~~~~vvy~S~~aH~Sv~KAa~--ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT  298 (539)
T PLN02590        221 KVGKTLLPQLVVYGSDQTHSSFRKACL--IGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTT  298 (539)
T ss_pred             hhcccCCCCEEEEecCCchHHHHHHHH--HcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCC
Confidence                   11145568889999999999  8888   478888865456789999999998642      34556666678


Q ss_pred             CccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCCccEEEEecCcccccccccceEEEEeeCCC
Q 038416          160 PCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPN  238 (387)
Q Consensus       160 ptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~  238 (387)
                      .||.+   +++++|+++|++||+|+++|.+|+++..-...... +..++.-  .=+..+++|++ .....+|.++++++.
T Consensus       299 ~tGai---Dpl~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~A--DSit~D~HK~l-~~p~~cg~llvr~~~  372 (539)
T PLN02590        299 SSAAV---DPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENA--DSFNMNAHKWL-FANQTCSPLWVKDRY  372 (539)
T ss_pred             CCccc---CCHHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccC--CEEEECchhhc-CcCcCEEEEEecCHH
Confidence            89999   77999999999999999999999986533222211 2222211  13345799994 555889999998743


Q ss_pred             Ccc----cchhHHHHH-------HhhhhccC-CcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 038416          239 GIL----QNSGFVDSI-------KGCLNAAS-HPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITC  306 (387)
Q Consensus       239 ~~~----~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  306 (387)
                      .+.    .+++++..-       ......+. ..-.+....+-..|+....+.+.+++++..++++++.+.+++.|++++
T Consensus       373 ~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel  452 (539)
T PLN02590        373 SLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEV  452 (539)
T ss_pred             HHHHHhhcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence            110    011111000       00000011 111122222333344455678999999999999999999999999997


Q ss_pred             CCCCCceEEEEEecCcccccCC-Cc--HHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee---CChHhHHHHHHHHHHHH
Q 038416          307 PVKPQGAMFVMVKLNVSMLEDI-GD--DLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA---AEPATLEDGLERIKAFC  380 (387)
Q Consensus       307 ~~~~~~g~~~~~~~~~~~~~~~-~~--~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~---~~~e~~~~~~~~l~~~~  380 (387)
                      +..|.-+ .+++++........ .+  ..++.+++.+ .|.............++|+++.   +++++++.+++.|.+..
T Consensus       453 ~~~~~l~-iVcFr~~~~~~~~~~~~~ln~~l~~~l~~-~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a  530 (539)
T PLN02590        453 VTTRYFS-LVCFRLAPVDGDEDQCNERNRELLAAVNS-TGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHA  530 (539)
T ss_pred             ecCCceE-EEEEEecCCCCCHHHHHHHHHHHHHHHHh-CCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence            7555544 34445432111000 00  1244455543 4554444344444568999994   47899999999999987


Q ss_pred             HHhhh
Q 038416          381 QRHAK  385 (387)
Q Consensus       381 ~~~~~  385 (387)
                      +++.+
T Consensus       531 ~~~~~  535 (539)
T PLN02590        531 SKFTR  535 (539)
T ss_pred             HHhcc
Confidence            77654

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=99.85  E-value=3.7e-18  Score=143.76  Aligned_cols=324  Identities=13%  Similarity=0.067  Sum_probs=217.6

Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcc
Q 038416           30 AEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPL  109 (387)
Q Consensus        30 v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~  109 (387)
                      +-+.++++..++...+.++  ...++-+.+.+-++..|. ...+...++..+++.++++++-.++.|||+|++...+-++
T Consensus        28 l~~~V~~A~~~~~lgh~sP--e~~qIm~~v~egikyVFk-T~n~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg  104 (385)
T KOG2862|consen   28 LSGRVQEAMSRPSLGHMSP--EFVQIMDEVLEGIKYVFK-TANAQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWG  104 (385)
T ss_pred             CCHHHHHhhcCCccccCCH--HHHHHHHHHHHHHHHHhc-cCCCceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHH
Confidence            3344445555544433332  334444444443333332 2334566777888999999999999999999987665543


Q ss_pred             --hHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEee
Q 038416          110 --YEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIA  186 (387)
Q Consensus       110 --~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~  186 (387)
                        +.++++  ++|+++..++.+  .+..++++++.+.+.. .++++++++....||+..+.  ++.+.++|++|+.++++
T Consensus       105 ~ra~D~~~--r~ga~V~~v~~~--~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~--~~~~g~lc~k~~~lllV  178 (385)
T KOG2862|consen  105 QRAADCAR--RYGAEVDVVEAD--IGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDL--LAISGELCHKHEALLLV  178 (385)
T ss_pred             HHHHHHHH--hhCceeeEEecC--cccCccHHHHHHHHHhcCCceEEEEecCccccccchH--HHHHHHHhhcCCeEEEE
Confidence              568888  999999999764  3457899999998865 56889999999999999543  67778899999999999


Q ss_pred             cccccccccCCCCCccccccCCCccEEEEecCcccccc-cccceEEEEeeCCCCcccchhHHHHHHhhhh----------
Q 038416          187 DEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIV-PGWRLGWLVTSDPNGILQNSGFVDSIKGCLN----------  255 (387)
Q Consensus       187 D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~-~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~----------  255 (387)
                      |.+.+..   +. ...   ++.++-.+....-.|+++. +|  ++.+..++        .-.++++..++          
T Consensus       179 D~VaSlg---gt-~F~---mDewgVDvaytgSQKaL~aP~G--LsiisfS~--------ka~~~~~~rK~~~~~~yFd~~  241 (385)
T KOG2862|consen  179 DTVASLG---GT-EFE---MDEWGVDVAYTGSQKALGAPAG--LSIISFSD--------KALEAIRDRKTKPVSFYFDIL  241 (385)
T ss_pred             echhhcC---Cc-cce---ehhhcccEEEecchhhcCCCCC--cceeecCH--------HHHHHHhhccCCceEEEEeHH
Confidence            9998852   22 111   2333333445556688764 45  44455554        23333332211          


Q ss_pred             --------------ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCc-eEEEEEec
Q 038416          256 --------------AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQG-AMFVMVKL  320 (387)
Q Consensus       256 --------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-g~~~~~~~  320 (387)
                                    +..+++....+.+.++|....++.++...++++++.+.++..|+++ |++.....+. ...   .+
T Consensus       242 ~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~-GLq~fv~~e~~rlp---tv  317 (385)
T KOG2862|consen  242 RLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEAL-GLQLFVVDEELRLP---TV  317 (385)
T ss_pred             hhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CccceecChhhccC---cc
Confidence                          1235566677778888877778999999999999999999999997 5553322221 111   11


Q ss_pred             CcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe-eC--ChHhHHHHHHHHHHHHHHh
Q 038416          321 NVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF-AA--EPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       321 ~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~-~~--~~e~~~~~~~~l~~~~~~~  383 (387)
                      ....+|...|..+++..+..++++.+..|-....+..+||++ ++  +.|.++..++.|+.++.+.
T Consensus       318 ttv~vp~gvDw~dVv~~~~~~~~vei~gglg~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~~  383 (385)
T KOG2862|consen  318 TTVKVPYGVDWKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQRK  383 (385)
T ss_pred             eeeecCCCCCHHHHHHHHHHhcCEEeccccCCCcccEEEEEEeeccCCcHHHHHHHHHHHHHHhhc
Confidence            112233334777888888777788877776555578999999 43  5789999999998888764

>PLN02880 tyrosine decarboxylase

Probab=99.84  E-value=3.3e-18  Score=162.00  Aligned_cols=328  Identities=11%  Similarity=0.040  Sum_probs=213.3

Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCC-----CCEEEcCChHHHHHHHHHhhcC-----------CCCeEEEcCCC
Q 038416           43 YNCYSPTLGVPSARRGIADYLNRDLPYKLSP-----EDVYLTLGCSQAIEISLSVLAR-----------PGANILIPRPG  106 (387)
Q Consensus        43 ~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~-----~~i~~~~g~~~a~~~~~~~l~~-----------~g~~vl~~~p~  106 (387)
                      ...|...+...++++.+.+|+.+.++.+-..     ..-++|+|+|+++..++.+..+           +.-.|++++.+
T Consensus       111 ~~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~a  190 (490)
T PLN02880        111 GFSWITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQT  190 (490)
T ss_pred             CcccccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCc
Confidence            3344445567899999999999988865321     3467789999998887766432           11245578889


Q ss_pred             CcchHHHhhccCCCce---eeeeccCCCCCccCChhhHHHhhccC------ceEEEEeCCCCCccccCCHHHHHHHHHHH
Q 038416          107 YPLYEIHAAGSNNNLE---ARHYDLLPEKRWEVDLDGVEALADEN------TVAIVIINPGNPCGNVFSYQHLQKIARTA  177 (387)
Q Consensus       107 ~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~nptG~~~~~~~~~~l~~~~  177 (387)
                      |+++...+.  ..|++   ++.+|++..+++.+|++.|+++++..      +.+|+.+..+..||.+-|   +++|+++|
T Consensus       191 H~Sv~Kaa~--~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp---l~eI~~i~  265 (490)
T PLN02880        191 HSALQKACQ--IAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP---LLELGKIA  265 (490)
T ss_pred             hHHHHHHHH--HcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc---HHHHHHHH
Confidence            999999999  89985   67788765556789999999988542      344555566789999955   89999999


Q ss_pred             HhcCcEEeecccccccccCCCCCc-cccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhh---
Q 038416          178 RNLGIIVIADEVYNHLAFGSTPYV-PMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGC---  253 (387)
Q Consensus       178 ~~~~~~li~D~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~---  253 (387)
                      +++|+|+++|.+|+++........ .+..+.  .-..+..+++|++ .....+|+++.++..      .+.+.+...   
T Consensus       266 ~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie--~aDSit~d~HKwl-~~P~~~g~llvr~~~------~l~~~~~~~~~Y  336 (490)
T PLN02880        266 KSNGMWFHVDAAYAGSACICPEYRHYIDGVE--EADSFNMNAHKWF-LTNFDCSLLWVKDRN------ALIQSLSTNPEF  336 (490)
T ss_pred             HHcCCEEEEehhhHHHHHhCHHHHHHhcCch--hcCEEEECchhhc-CCCccEEEEEEeCHH------HHHHHHccCHHH
Confidence            999999999999998643221111 122221  1126677899995 666889999988632      122222110   


Q ss_pred             hhc-----cC----------CcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEE
Q 038416          254 LNA-----AS----------HPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMV  318 (387)
Q Consensus       254 ~~~-----~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~  318 (387)
                      ...     ..          ....+....+-..++....+.+.++.++..++++++.+.+++.++++++..|..+ .+.+
T Consensus       337 l~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~-iv~F  415 (490)
T PLN02880        337 LKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFS-LVCF  415 (490)
T ss_pred             hcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceE-EEEE
Confidence            000     00          0011111112122444456778888888889999999999998899977555544 4455


Q ss_pred             ecCcccccC-CCc--HHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee---CChHhHHHHHHHHHHHHHHhhhc
Q 038416          319 KLNVSMLED-IGD--DLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA---AEPATLEDGLERIKAFCQRHAKK  386 (387)
Q Consensus       319 ~~~~~~~~~-~~~--~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~---~~~e~~~~~~~~l~~~~~~~~~~  386 (387)
                      +++...... ..+  ..++.+++.++..+.+.+ ..+....++|+++.   +++++++.+++.|.+..+++..+
T Consensus       416 r~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~-t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~~~~  488 (490)
T PLN02880        416 RLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISH-TVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKLLGK  488 (490)
T ss_pred             EEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEE-EEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            654311100 000  123455554445555544 33444679999994   46799999999999988877654

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.84  E-value=2.3e-18  Score=153.10  Aligned_cols=218  Identities=20%  Similarity=0.109  Sum_probs=161.2

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhh--ccCCCceeeeec
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAA--GSNNNLEARHYD  127 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~--~~~~g~~~~~~~  127 (387)
                      +....|++.+++..        ....+++.++|+.|+..++..|+..|++|+.....|.+...+++  ....|++...++
T Consensus        77 Pt~~~le~~iaal~--------ga~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd  148 (409)
T KOG0053|consen   77 PTRDVLESGIAALE--------GAAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVD  148 (409)
T ss_pred             CchHHHHHHHHHHh--------CCceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeec
Confidence            45567777888776        44668999999999999999999999999999999998776665  225677766665


Q ss_pred             cCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccC
Q 038416          128 LLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFG  207 (387)
Q Consensus       128 ~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~  207 (387)
                      +       -+++.+++++++++++|++.+|.||+..+.+   +++++++|+++|+++|+|+.++....-     ....+.
T Consensus       149 ~-------~~~~~~~~~i~~~t~~V~~ESPsNPll~v~D---I~~l~~la~~~g~~vvVDnTf~~p~~~-----~pL~lG  213 (409)
T KOG0053|consen  149 V-------DDLKKILKAIKENTKAVFLESPSNPLLKVPD---IEKLARLAHKYGFLVVVDNTFGSPYNQ-----DPLPLG  213 (409)
T ss_pred             h-------hhHHHHHHhhccCceEEEEECCCCCcccccc---HHHHHHHHhhCCCEEEEeCCcCccccc-----ChhhcC
Confidence            3       2678899999999999999999999999966   888888888999999999999864211     112233


Q ss_pred             CCccEEEEecCcccccccc-cceEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHH
Q 038416          208 SIVPVITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIG  285 (387)
Q Consensus       208 ~~~~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  285 (387)
                      .|   +++.|.+|.++... +=.|.++.+       .+++..+++.... ..+.++++....+..-++.     +.-+.+
T Consensus       214 AD---IV~hSaTKyi~Ghsdvi~G~iv~n-------~~~~~~~l~~~~~~lg~~~~p~~~~ll~Rglkt-----l~lRi~  278 (409)
T KOG0053|consen  214 AD---IVVHSATKYIGGHSDVIGGSVVLN-------SEELASRLKFLQEDLGWCEDPFDLFLLSRGLKT-----LHLRIN  278 (409)
T ss_pred             CC---EEEEeeeeeecCCcceeeeEEecC-------cHHHHHHHHHHHHHhcCCCCHHHHHHHhcCcch-----hhhhHH
Confidence            33   99999999986544 434555553       2368888877654 6677777776666544443     455666


Q ss_pred             HHHHHHHHHHHHhhcCCCCC
Q 038416          286 LLKETADICYERIKEIPCIT  305 (387)
Q Consensus       286 ~~~~~~~~~~~~l~~~~~~~  305 (387)
                      +..+++..+.+.|+..|.++
T Consensus       279 ~~~ena~~~A~~Le~~~~v~  298 (409)
T KOG0053|consen  279 KHSENALKIALLLEAHPKVK  298 (409)
T ss_pred             HHHHHHHHHHHHhhhCCcee
Confidence            66677666777777655444

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.84  E-value=6.9e-18  Score=153.90  Aligned_cols=339  Identities=14%  Similarity=0.084  Sum_probs=216.8

Q ss_pred             ccccccCCCCCCCCCCCCCCCcHHHHHH-HHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHH
Q 038416            6 GQETRHSPWPRRPLGVSLLSDSTVAEDA-VVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQ   84 (387)
Q Consensus         6 g~~~~~~~~~~~~~~~~~~~~~~~v~~a-~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~   84 (387)
                      ..++++++..       |-++ ..+.++ +......+.  .|..+..+.+|++.+++++        ..+.++.|++++.
T Consensus        36 ~~~v~iDLlt-------DsgT-~aMs~~q~a~~~~GDe--~yag~~s~~~lE~~va~~~--------G~~~av~v~sGT~   97 (450)
T TIGR02618        36 SEDVYIDLLT-------DSGT-NAMSDKQWAGLMMGDE--AYAGSRNFYHLERTVRELY--------GFKYVVPTHQGRG   97 (450)
T ss_pred             cCceEEEccc-------CCCc-HHHHHHHHHHhhhcch--hhcCCCcHHHHHHHHHHHH--------CCCeEEEcCCHHH
Confidence            3455666533       3344 666666 666665543  4777778899999999999        4568999999999


Q ss_pred             HHHHHHHhhcCCCCeEEEcCCCCcchHHH-hhccCCCceeeeeccC--------CCCCccCChhhHHHhhcc----CceE
Q 038416           85 AIEISLSVLARPGANILIPRPGYPLYEIH-AAGSNNNLEARHYDLL--------PEKRWEVDLDGVEALADE----NTVA  151 (387)
Q Consensus        85 a~~~~~~~l~~~g~~vl~~~p~~~~~~~~-~~~~~~g~~~~~~~~~--------~~~~~~~~~~~l~~~~~~----~~~~  151 (387)
                      |++++....+++||.|  +.+.|+..... +.  ..|..+..++.+        ...++.+|++.+++++++    ++..
T Consensus        98 Al~ll~~l~l~pGDeV--psn~~f~Tt~ahIe--~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~l  173 (450)
T TIGR02618        98 AENLLSQIAIKPGDYV--PGNMYFTTTRYHQE--KNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPY  173 (450)
T ss_pred             HHHHHHHhCCCCcCEE--CCceeHHHHHHHHH--hCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCc
Confidence            9998877778999976  66777554443 56  778766666432        123457899999999975    3446


Q ss_pred             EEEeCCCC-CccccCCHHHHHHHHHHHHhcCcEEeecccccc----cc------cCCCCCcc-ccccCCCccEEEEecCc
Q 038416          152 IVIINPGN-PCGNVFSYQHLQKIARTARNLGIIVIADEVYNH----LA------FGSTPYVP-MGVFGSIVPVITLGSIS  219 (387)
Q Consensus       152 v~l~~p~n-ptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~----~~------~~~~~~~~-~~~~~~~~~~~~i~s~s  219 (387)
                      +.+.+++| .+|+.+|.++++++.++|++||++||.|.++..    |.      +.+.+... ...+.... ..++.|..
T Consensus       174 V~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~a-D~~~~S~~  252 (450)
T TIGR02618       174 ICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYA-DGCTMSGK  252 (450)
T ss_pred             eEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccC-cEEEEeec
Confidence            77888877 558999999999999999999999999999874    11      11211100 01111111 14778899


Q ss_pred             ccccccccceEEEEeeCCCCcccchhHHHHHHhhhhccC------CcchHHHHHHHHHhhhcc-HHHHHHHHHHHHHHHH
Q 038416          220 KRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAAS------HPVTFIQAAVPRIVDETN-EAFFAKIIGLLKETAD  292 (387)
Q Consensus       220 K~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~  292 (387)
                      |.++.+-  .|+++.++       +++.++++.......      ..+.-...++...|.+.. +.+.    +....+.+
T Consensus       253 Kd~~~~~--GG~l~~~d-------~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~~~y~----~~r~~~a~  319 (450)
T TIGR02618       253 KDCLVNI--GGFLCMND-------DEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVDYEYI----EHRVKQVR  319 (450)
T ss_pred             cCCCCCC--ceEEEeCC-------HHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhhHHHH----HHHHHHHH
Confidence            9976552  25555454       368887776632111      112223333333344321 2222    33333566


Q ss_pred             HHHHHhhcCCCCCCCCCCCceEEEEEecCc--ccccC-CCcHHHHHHHHHHhcCeEEE-cCCcc-CC-----------CC
Q 038416          293 ICYERIKEIPCITCPVKPQGAMFVMVKLNV--SMLED-IGDDLEFCLKLAKEESVIIL-PGRTV-GM-----------KN  356 (387)
Q Consensus       293 ~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~-~~~~~~~~~~ll~~~gi~v~-~g~~~-~~-----------~~  356 (387)
                      ++.+.|.+. |+.++ .|.+|..++++...  +.+|. -.....++.+|..+.||-.. -|+.. +.           -.
T Consensus       320 ~La~~L~~~-Gvpv~-~p~ggh~V~vda~~~lph~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~e  397 (450)
T TIGR02618       320 YLGDKLKAA-GVPIV-EPVGGHAVFLDARRFLPHIPQDQFPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLE  397 (450)
T ss_pred             HHHHHHHHC-CCccc-CCCCcceEEEEhHHhCCCCChhhChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccc
Confidence            777788777 78854 78889888887543  11221 11456778888888888644 23322 11           14


Q ss_pred             eEEEEee---CChHhHHHHHHHHHHHHHH
Q 038416          357 WLRIAFA---AEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       357 ~~Ri~~~---~~~e~~~~~~~~l~~~~~~  382 (387)
                      .+|+.+.   -+.+.++...++|..+.++
T Consensus       398 l~rlaiprr~yt~~h~~~v~~~~~~~~~~  426 (450)
T TIGR02618       398 LVRLTIPRRVYTYAHMDVVADGIIKLYKH  426 (450)
T ss_pred             eeeeccccccccHhHHHHHHHHHHHHHhh
Confidence            6999993   3788888888888776654

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.84  E-value=4.8e-18  Score=155.72  Aligned_cols=281  Identities=15%  Similarity=0.104  Sum_probs=184.5

Q ss_pred             CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchH----HHhhccCCCceee
Q 038416           49 TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYE----IHAAGSNNNLEAR  124 (387)
Q Consensus        49 ~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~----~~~~~~~~g~~~~  124 (387)
                      .+...+|++.++++.        ..+..+.+++++.|+.+++.+++++||+|+++.+.|.+..    ..+.  ..|+++.
T Consensus        63 ~P~~~~lE~~la~le--------g~~~av~~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~--~~Gi~v~  132 (384)
T PRK06434         63 NPTVQAFEEKYAVLE--------NAEHALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLK--TLGIHVD  132 (384)
T ss_pred             ChhHHHHHHHHHHHh--------CCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHH--hcCcEEE
Confidence            345678888898887        3457888888999999999999999999999888776544    4555  7899999


Q ss_pred             eeccCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccc
Q 038416          125 HYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPM  203 (387)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~  203 (387)
                      .++.++.+.+.         +++ ++++|++..|+||++...+   +++|.++|++++  +++|.+++.. +.+.   ++
T Consensus       133 fvd~~~~~~~~---------l~~~~tklv~~e~~snpt~~v~D---i~~I~~la~~~~--lvVD~t~~s~-~~~~---pl  194 (384)
T PRK06434        133 YIDTDRLNSLD---------FDPSNYDLIYAESITNPTLKVPD---IKNVSSFCHEND--VIVDATFASP-YNQN---PL  194 (384)
T ss_pred             EECCCChhhee---------ecCCCeeEEEEEcCCCCCceeec---HHHHHHHHHHcC--eEEECCCCCc-ccCC---ch
Confidence            88864322222         223 6899999999999998855   888899999998  4669997531 1121   22


Q ss_pred             cccCCCccEEEEecCcccccccc-cceEEEEeeCCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHH
Q 038416          204 GVFGSIVPVITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFA  281 (387)
Q Consensus       204 ~~~~~~~~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~  281 (387)
                      . ...   .+++.|.+|.++.+| .=.|.+++++       +++.++++... ..+...+++..+.+..-|+     .++
T Consensus       195 ~-~ga---Divv~S~tK~i~G~~d~~gG~vv~~~-------~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~-----tL~  258 (384)
T PRK06434        195 D-LGA---DVVIHSATKYISGHSDVVMGVAGTNN-------KSIFNNLVERRKTLGSNPDPIQAYLALRGLK-----TLG  258 (384)
T ss_pred             h-cCC---CEEEeecccccCCCCCceEEEEecCc-------HHHHHHHHHHHHhcCCCCCHHHHHHHHhCCC-----cHH
Confidence            2 222   388999999976544 3356665543       24666666443 3344445544444333343     378


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----------ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCc
Q 038416          282 KIIGLLKETADICYERIKEIPCITCPVKPQ----------GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRT  351 (387)
Q Consensus       282 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~  351 (387)
                      .+.++.+++++.+.+.|++.|.+..+.+|.          .|.++.+.+..  .   .....+++.+ +=..+.++-|+.
T Consensus       259 ~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~~--~---~~~~~f~~~l-~l~~~~~slG~~  332 (384)
T PRK06434        259 LRMEKHNKNGMELARFLRDSKKISNVYYPDTEIGKKVLRGFGGMLSFELRS--M---EDVHKFIRNL-EIPMVAASLGGV  332 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCccEEECCChHHHHHhcCCCCceEEEEECC--H---HHHHHHHHhC-CcceEccCCCCC
Confidence            888999999999999999998776666664          34455555531  0   1222333332 111111111211


Q ss_pred             c----------------------CC-CCeEEEEeeCChHhHHHHHHHHHHHHH
Q 038416          352 V----------------------GM-KNWLRIAFAAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       352 ~----------------------~~-~~~~Ri~~~~~~e~~~~~~~~l~~~~~  381 (387)
                      .                      +. ++.+|||++.  |+.+.+++.|.+++.
T Consensus       333 ~sl~~~p~~~~h~~~~~e~~~~~gi~~~liRlsvGl--Ed~~dLi~dl~~Al~  383 (384)
T PRK06434        333 ESLITLPVETSHSSLSPEERERLGISDNLVRFSIGI--EDIDDLIKDIENALS  383 (384)
T ss_pred             CeeeECCCccccccCCHHHHHhcCCCcCeEEEEeCc--CCHHHHHHHHHHHhc
Confidence            0                      00 3579999999  677888888888774

>PLN02271 serine hydroxymethyltransferase

Probab=99.84  E-value=8.1e-18  Score=156.21  Aligned_cols=337  Identities=13%  Similarity=0.047  Sum_probs=220.2

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCC------CCCcHHHHHHHHHHHhhcCCCCCCC--CCEEEcCChHHHHHHHHHhhcCC
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSP------TLGVPSARRGIADYLNRDLPYKLSP--EDVYLTLGCSQAIEISLSVLARP   96 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~------~~~~~~lr~~ia~~~~~~~~~~~~~--~~i~~~~g~~~a~~~~~~~l~~~   96 (387)
                      -+++.+.+++-..+.+....+|+.      .....+++....+...+.|+.....  .+|..- +++.|+.+++.+|++|
T Consensus       159 ~~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~-SGs~AN~aV~~ALl~P  237 (586)
T PLN02271        159 FVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPY-SCTSANFAVYTGLLLP  237 (586)
T ss_pred             cCCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeec-cHHHHHHHHHHHhcCC
Confidence            467888888888877755444442      2233466666666666656533211  355444 6788999999999999


Q ss_pred             CCeEEEcCCCCcchHHHhh-------ccCCCceee--eeccCCCCCccCChhhHHH-hhccCceEEEEeCCCCCccccCC
Q 038416           97 GANILIPRPGYPLYEIHAA-------GSNNNLEAR--HYDLLPEKRWEVDLDGVEA-LADENTVAIVIINPGNPCGNVFS  166 (387)
Q Consensus        97 g~~vl~~~p~~~~~~~~~~-------~~~~g~~~~--~~~~~~~~~~~~~~~~l~~-~~~~~~~~v~l~~p~nptG~~~~  166 (387)
                      ||+|+..+..|.+......       .+..|..+.  +++++++ ...+|.+++++ +...++++|++....+|  ..++
T Consensus       238 GD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~-~g~IDyd~lek~a~~~rPKLII~g~Sayp--r~~D  314 (586)
T PLN02271        238 GDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQ-TGYIDYDKLEEKALDFRPKILICGGSSYP--REWD  314 (586)
T ss_pred             CCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccc-cCccCHHHHHHHhhhcCCeEEEECchhcc--CcCC
Confidence            9999998777665433211       114454444  4445433 34799999998 66778998888766776  3444


Q ss_pred             HHHHHHHHHHHHhcCcEEeecccccccccCCC-CCccccccCCCccEEEEecCcccccccccceEEEEeeCCCC------
Q 038416          167 YQHLQKIARTARNLGIIVIADEVYNHLAFGST-PYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNG------  239 (387)
Q Consensus       167 ~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~------  239 (387)
                         ++++.++|+++|+++++|.+|......+. ...++..  .   .++.+|.+|+  +.|.|.|.++.++...      
T Consensus       315 ---~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~~--a---Dvvt~TTHKt--LrGPrGG~I~~r~~~~~~~~g~  384 (586)
T PLN02271        315 ---YARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDY--C---DIVTSTTHKS--LRGPRGGIIFYRKGPKLRKQGM  384 (586)
T ss_pred             ---HHHHHHHHHHcCCEEEEECcccccccccCcCCCCCcC--C---cEEEeCCccc--CCCCCceEEEecccccccccCC
Confidence               78888899999999999999995443332 2223321  2   2889999999  5677779988864210      


Q ss_pred             ------cccchhHHHHHHhhhh--ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 038416          240 ------ILQNSGFVDSIKGCLN--AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ  311 (387)
Q Consensus       240 ------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  311 (387)
                            ....+++.+++.+...  +-+++.....++++.+++......+....+++.+|++.+.+.|.+. |+.++....
T Consensus       385 ~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~-G~~vv~ggT  463 (586)
T PLN02271        385 LLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALASALLRR-KCRLVTGGT  463 (586)
T ss_pred             ccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHC-CCeEeeCCC
Confidence                  0011345454443321  2233444455666666665433445888899999999999999887 788665556


Q ss_pred             ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC-----CCeEEEEe------eCChHhHHHHHHHHHHHH
Q 038416          312 GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM-----KNWLRIAF------AAEPATLEDGLERIKAFC  380 (387)
Q Consensus       312 ~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-----~~~~Ri~~------~~~~e~~~~~~~~l~~~~  380 (387)
                      ....+++++...+.     ....+..+|++.||.++....++.     +..+||+.      +..++++.++.+.|.+++
T Consensus       464 dnHlvLvDl~~~g~-----~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~  538 (586)
T PLN02271        464 DNHLLLWDLTTLGL-----TGKNYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAA  538 (586)
T ss_pred             CcceeeecCcccCC-----CHHHHHHHHHHcCeEeccccCCCCCCCCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            66677777754321     345667778999999874333222     46799998      235688888888887776


Q ss_pred             H
Q 038416          381 Q  381 (387)
Q Consensus       381 ~  381 (387)
                      +
T Consensus       539 ~  539 (586)
T PLN02271        539 Q  539 (586)
T ss_pred             h
Confidence            5

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.84  E-value=1.2e-17  Score=156.96  Aligned_cols=347  Identities=15%  Similarity=0.082  Sum_probs=201.2

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCC-CCCEEEcCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLS-PEDVYLTLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~-~~~i~~~~g~~~a~~   87 (387)
                      .++++.-|.-.....+ .+|.+.+++++++.....  +.......+....+++.+....+  .. .+.|++++++++|++
T Consensus        43 ~ylD~~~g~~~~~lGH-~~p~v~~Ai~~ql~~~~~--~~~~~~~~~~~~~lae~L~~~~p--~~~~~~v~f~~SGseA~e  117 (445)
T PRK08593         43 TYIDLLASASSQNVGH-APPRVVEAIKAQADKFIH--YTPAYMYHEPLVRLAKKLCELAP--GDFEKRVTFGLSGSDAND  117 (445)
T ss_pred             EEEECCccHHhhcCCC-CCHHHHHHHHHHHHhccC--ccccccCCHHHHHHHHHHHHhCC--CCCCCEEEECCchHHHHH
Confidence            4555544322222233 579999999999875322  11111123444455555544322  12 258999999999999


Q ss_pred             HHHHhhc--CCCCeEEEcCCCCcchHHHhhccCCC-------------ceeeeeccCCCCC--cc-CC-------hhhHH
Q 038416           88 ISLSVLA--RPGANILIPRPGYPLYEIHAAGSNNN-------------LEARHYDLLPEKR--WE-VD-------LDGVE  142 (387)
Q Consensus        88 ~~~~~l~--~~g~~vl~~~p~~~~~~~~~~~~~~g-------------~~~~~~~~~~~~~--~~-~~-------~~~l~  142 (387)
                      .+++...  ....+|+....+|++....+. +..+             .++..+|.+....  +. .+       +++++
T Consensus       118 ~AiklAr~~tgr~~ii~~~~~YHG~t~~al-s~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  196 (445)
T PRK08593        118 GIIKFARAYTGRPYIISFTNAYHGSTYGSL-SMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLK  196 (445)
T ss_pred             HHHHHHHHhhCCCeEEEECCCcCCCcHHHH-hhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHH
Confidence            9998743  123578888989988643332 0111             0122233221100  00 01       13344


Q ss_pred             Hhhc----cCceEEEEeCC-CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCCccEEEE
Q 038416          143 ALAD----ENTVAIVIINP-GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVITL  215 (387)
Q Consensus       143 ~~~~----~~~~~v~l~~p-~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~i  215 (387)
                      +.++    +...+.++..| ++..|.. +|++.++++.++|++||+++|+||++.+|...|..+.. .....++     +
T Consensus       197 ~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pD-----i  271 (445)
T PRK08593        197 EMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPD-----L  271 (445)
T ss_pred             HHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCC-----E
Confidence            4332    12334444555 6677876 78888999999999999999999999987665542211 1122222     4


Q ss_pred             ecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHH
Q 038416          216 GSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADIC  294 (387)
Q Consensus       216 ~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  294 (387)
                      .+++|.++ .|+++|++++++        ++.+.+.... .+++..++.+++++.+.|+...++.   ..++.+++.+++
T Consensus       272 ~t~gK~l~-~G~p~gav~~~~--------~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~---l~~~~~~~g~~l  339 (445)
T PRK08593        272 MSFGKSLA-GGMPMSAIVGRK--------EIMESLEAPAHLFTTGANPVSCAAALATIDMIEDES---LLQRSAEKGEYA  339 (445)
T ss_pred             eeeccccc-CCcccEEEEEcH--------HHHhhhccCCCCCCCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHH
Confidence            47899965 679999999976        6777664322 2456778888888887777544332   233334343444


Q ss_pred             HHHhh----cCCCCCCCCCCCceEEEEEecCcc---cccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CC
Q 038416          295 YERIK----EIPCITCPVKPQGAMFVMVKLNVS---MLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AE  365 (387)
Q Consensus       295 ~~~l~----~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~  365 (387)
                      ++.|+    ++|.+..  ....|.++.+.+...   ..+.......+...+ .++||.+.+..    .+.+|+.+.  ++
T Consensus       340 ~~~L~~l~~~~~~v~~--vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~-~~~Gv~~~~~~----~~~lr~~p~l~~t  412 (445)
T PRK08593        340 RKRFDQWVSKYNFVGD--VRGYGLSIGIDIVSDKKLKTRDNEAALKICNYC-FEHGVVIIAVA----GNVLRFQPPLVIT  412 (445)
T ss_pred             HHHHHHHHhcCCcEEE--EeccceEEEEEEecCCCcCCCcHHHHHHHHHHH-HHCCeEEeccC----CCEEEEECCCccC
Confidence            44443    3432221  233455555555321   111100123444444 56799987632    468999884  68


Q ss_pred             hHhHHHHHHHHHHHHHHhhh
Q 038416          366 PATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       366 ~e~~~~~~~~l~~~~~~~~~  385 (387)
                      +++++.+++.+.++++++.+
T Consensus       413 ~~~id~~~~~l~~~l~~~~~  432 (445)
T PRK08593        413 YEQLDTALNTIEQAFTALEA  432 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999987654

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.83  E-value=1.4e-17  Score=157.00  Aligned_cols=336  Identities=14%  Similarity=0.051  Sum_probs=200.5

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCC------CCCCcHHHHHHHHHHHhhcCCCCCCCCCEEE---cCChHHHHHHHHHhhcC
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYS------PTLGVPSARRGIADYLNRDLPYKLSPEDVYL---TLGCSQAIEISLSVLAR   95 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~------~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~---~~g~~~a~~~~~~~l~~   95 (387)
                      .+++.+.+++.+.+.+....+|+      ...-..++++...+...+.++  ...+.+.+   ..+|+.|+..++.+|++
T Consensus        45 ~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~--~~~~~~~~nv~~~SG~~AN~av~~aL~~  122 (475)
T PLN03226         45 FTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFR--LDPEKWGVNVQPLSGSPANFAVYTALLQ  122 (475)
T ss_pred             cCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhC--CCcceeEEecCcCchHHHHHHHHHHhCC
Confidence            57888999999988554333332      222344555433333333333  23333333   37788999999999999


Q ss_pred             CCCeEEEcCC---CCcchHH---HhhccCCCce--eeeeccCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCccccCC
Q 038416           96 PGANILIPRP---GYPLYEI---HAAGSNNNLE--ARHYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCGNVFS  166 (387)
Q Consensus        96 ~g~~vl~~~p---~~~~~~~---~~~~~~~g~~--~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~  166 (387)
                      +||+|+..+.   +|.+...   ..+.+..+..  +..+.++. ++..+|+++|++.+.. ++++|++ ..++ +|...+
T Consensus       123 pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~-~~g~iD~d~Le~~l~~~~pklIv~-~~S~-~s~~~D  199 (475)
T PLN03226        123 PHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDE-STGLIDYDKLEKKAMLFRPKLIIA-GASA-YPRDWD  199 (475)
T ss_pred             CCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecC-CCCCcCHHHHHHHHhhcCCeEEEE-ecCc-CCCccC
Confidence            9999998442   3332211   1120112211  12334443 3457899999998864 5665544 3333 565654


Q ss_pred             HHHHHHHHHHHHhcCcEEeecccccccccCCCCC-ccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcc----
Q 038416          167 YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPY-VPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGIL----  241 (387)
Q Consensus       167 ~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~----  241 (387)
                         +++|.++|+++|+++++|++|.......... .++.     ...++++|++|++  .|.+.|++++++.. .-    
T Consensus       200 ---~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~-----~~Div~~t~hK~L--~GP~Gg~I~~~~~~-~~~~~~  268 (475)
T PLN03226        200 ---YARMRKIADKVGALLMCDMAHISGLVAAQEAASPFE-----YCDVVTTTTHKSL--RGPRGGMIFFRKGP-KPPKGQ  268 (475)
T ss_pred             ---HHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCC-----CCeEEEecCcccc--cCCCceEEEEchhh-cccccC
Confidence               7788899999999999999998543332211 2221     1238899999996  33444888876411 00    


Q ss_pred             ---cchhHHHHHHhhh--hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEE
Q 038416          242 ---QNSGFVDSIKGCL--NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFV  316 (387)
Q Consensus       242 ---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~  316 (387)
                         ...++.+.+....  .+..++++....++..+++...+...++..+++.++++++.+.|++. |+.++........+
T Consensus       269 g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~-G~~l~~~~t~~hi~  347 (475)
T PLN03226        269 GEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSK-GYKLVTGGTDNHLV  347 (475)
T ss_pred             CCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhC-CCEEEcCCCCCCEE
Confidence               0001211121111  12344556666666666665433445677889999999999999886 78755322334566


Q ss_pred             EEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccC-----CCCeEEEEe------eCChHhHHHHHHHHHHHHHH
Q 038416          317 MVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG-----MKNWLRIAF------AAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~-----~~~~~Ri~~------~~~~e~~~~~~~~l~~~~~~  382 (387)
                      ++.+.....    +.. .+...|++.||.+..+..++     .++.+|++.      +.++++++++.+.|.++++.
T Consensus       348 lv~~~~~gi----~~~-~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~~  419 (475)
T PLN03226        348 LWDLRPLGL----TGS-RVEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTI  419 (475)
T ss_pred             EEEccCCCC----CHH-HHHHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence            677643221    333 34455678899998764322     246799966      34788999999999998873

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.83  E-value=2.8e-17  Score=154.78  Aligned_cols=335  Identities=13%  Similarity=0.117  Sum_probs=195.2

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCC-EEEcCChHHHHHHHHHhhc--CCCCeEEE
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPED-VYLTLGCSQAIEISLSVLA--RPGANILI  102 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~-i~~~~g~~~a~~~~~~~l~--~~g~~vl~  102 (387)
                      .+|.+.+++++++......+..  .-..+.+..+++.+....+....... +++++++++|++.+++...  ....+|+.
T Consensus        56 ~~p~i~~ai~~q~~~~~~~~~~--~~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~  133 (442)
T TIGR00709        56 NHPNMKQKILDYLQSGLPLHTL--DLTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGRTNVIS  133 (442)
T ss_pred             CCHHHHHHHHHHHHhccCcccc--ccCcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEE
Confidence            5788999999988763211111  11234555666666554321111234 4556899999999998754  22367999


Q ss_pred             cCCCCcchHHHhhccCCC------------ceeeeeccCCCCC--cc----CCh----hhHHHhhc------cCceEEEE
Q 038416          103 PRPGYPLYEIHAAGSNNN------------LEARHYDLLPEKR--WE----VDL----DGVEALAD------ENTVAIVI  154 (387)
Q Consensus       103 ~~p~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~--~~----~~~----~~l~~~~~------~~~~~v~l  154 (387)
                      ...+|++....+. +..+            ..+..++.+....  +.    .+.    +.+++.++      .+..++++
T Consensus       134 ~~~~yHG~t~~~~-s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~  212 (442)
T TIGR00709       134 FSGGFHGMTIGAL-AVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVIL  212 (442)
T ss_pred             EcCCcCCchHHHH-hhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEE
Confidence            9999988654444 0111            0122222211100  00    011    11333332      23344454


Q ss_pred             eCCCCCccc-cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEE
Q 038416          155 INPGNPCGN-VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLV  233 (387)
Q Consensus       155 ~~p~nptG~-~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~  233 (387)
                      ...++..|. .+|++.++++.++|++||+++|.||++.+|...|..+. ...++....++   +++|.++. |+++|+++
T Consensus       213 Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a-~~~~gv~PDiv---~~gK~l~~-G~Pigav~  287 (442)
T TIGR00709       213 EAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFA-FEHAGIEPDFV---VMSKAVGG-GLPLAVLL  287 (442)
T ss_pred             ccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhH-HHHcCCCCcEE---EEcccccC-CcccEEEE
Confidence            444554554 58889999999999999999999999999877664332 22232222233   37899865 89999999


Q ss_pred             eeCCCCcccchhHHHHHHhh-hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc----CCCCCCCC
Q 038416          234 TSDPNGILQNSGFVDSIKGC-LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE----IPCITCPV  308 (387)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~  308 (387)
                      +++        + .+.+... ...+++.+++++.++.+.|+...++.+   .+..+++.+++.+.|++    .|.+..  
T Consensus       288 ~~~--------~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i~~~~l---~~~~~~~g~~l~~~L~~l~~~~~~v~~--  353 (442)
T TIGR00709       288 IAP--------E-FDAWQPAGHTGTFRGNQLAMVTGTEALNYWKDDNL---AQNAQERGERITSFLDDMIKEHPCIGN--  353 (442)
T ss_pred             Ech--------H-HhccCCCcCCCCCCcCHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHhCCCeee--
Confidence            975        3 2333211 234677899999999888875443333   33444444444444443    443321  


Q ss_pred             CCCceEEEEEecCccccc-C----CC---cHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHH
Q 038416          309 KPQGAMFVMVKLNVSMLE-D----IG---DDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKA  378 (387)
Q Consensus       309 ~~~~g~~~~~~~~~~~~~-~----~~---~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~  378 (387)
                      ...-|.++.+.+...... +    ..   .....+...+.++|+.+.+...  ..+.+|+.+.  +++++++++++++.+
T Consensus       354 vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~--~~~~l~~~Ppl~it~~ei~~~~~~l~~  431 (442)
T TIGR00709       354 VRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGR--EGEVFRLLCPITIDQEECEEGISRFKQ  431 (442)
T ss_pred             eeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecCC--CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            234566777766432100 0    00   1122233344677999876432  1478898884  689999999999999


Q ss_pred             HHHHhh
Q 038416          379 FCQRHA  384 (387)
Q Consensus       379 ~~~~~~  384 (387)
                      ++++..
T Consensus       432 ~l~~~~  437 (442)
T TIGR00709       432 AVEEAL  437 (442)
T ss_pred             HHHHHH
Confidence            997753

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=99.83  E-value=2.4e-19  Score=154.24  Aligned_cols=290  Identities=16%  Similarity=0.198  Sum_probs=188.6

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCC----C--CeEEEcCCCCcchHHHhhccCCCcee
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARP----G--ANILIPRPGYPLYEIHAAGSNNNLEA  123 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~----g--~~vl~~~p~~~~~~~~~~~~~~g~~~  123 (387)
                      ....+|++.|.+++....+..++...|++.+|+|+.+++++.+|...    +  -+|+...|.|+.|.....  .+.-..
T Consensus        43 f~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~--~f~s~~  120 (363)
T PF04864_consen   43 FISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTD--FFDSRL  120 (363)
T ss_dssp             TS-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCC--CT-BTT
T ss_pred             eccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHH--hccccC
Confidence            45689999999999887777777789999999999999999999632    1  389999999999988877  665555


Q ss_pred             eeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccc
Q 038416          124 RHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPM  203 (387)
Q Consensus       124 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~  203 (387)
                      ..+.-+. ..|       ...-.+.+-+=++++||||.|.+     .+.++   +..+..+|-|-+|.+-.|     .++
T Consensus       121 y~w~Gda-~~~-------~~~~~~~~~IElVTSPNNPDG~l-----r~~V~---~g~~~k~I~D~AYYWPhy-----TpI  179 (363)
T PF04864_consen  121 YKWAGDA-SNF-------KNSDNPSPYIELVTSPNNPDGQL-----REAVL---NGSSGKVIHDLAYYWPHY-----TPI  179 (363)
T ss_dssp             EEEEEEC-CCG-------TT-S-CCGEEEEEESS-TTT-----------SS---TTTEEEEEEE-TT-STTT-----S--
T ss_pred             ccccccH-Hhh-------ccCCCCCCeEEEEeCCCCCcccc-----cchhc---CCCCcceeeeeeeecccc-----ccc
Confidence            5554321 112       11111234444899999999988     55554   355667899999986332     333


Q ss_pred             cc-cCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccH----
Q 038416          204 GV-FGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNE----  277 (387)
Q Consensus       204 ~~-~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~----  277 (387)
                      .. .+.   .+-+.|+||.=|-+|-|+||.+..|       .++.+++..+.. .+.+.+.-+|..+.++|+...+    
T Consensus       180 ~~~aD~---DiMLFT~SK~TGHAGSR~GWAlVKD-------~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~  249 (363)
T PF04864_consen  180 TAPADH---DIMLFTLSKLTGHAGSRFGWALVKD-------EEVAKKMTKYMELNTIGVSRDSQLRALKILKVVLDGYGT  249 (363)
T ss_dssp             -S-B-----SEEEEEHHHHCS-GGG-EEEEEES--------HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHCCH
T ss_pred             CCCCCC---ceEEEEEecccCccccccceeeecC-------HHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhcccC
Confidence            22 222   3778899999999999999999976       468888888754 4567888889888888775221    


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC-C-----------CceEEEEEecCcccccCCCcHHHHHHHHHH
Q 038416          278 -----AFFAKIIGLLKETADICYERIKEIPCITCPVK-P-----------QGAMFVMVKLNVSMLEDIGDDLEFCLKLAK  340 (387)
Q Consensus       278 -----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~  340 (387)
                           ..+.--.+.+++|-+.+++.+..-..+.+... |           ...-|.|++++..       ..+.+...++
T Consensus       250 ~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~e-------ed~DC~~~l~  322 (363)
T PF04864_consen  250 EKGTEDIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCERE-------EDEDCYAVLR  322 (363)
T ss_dssp             HTTTTSHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSC-------GGSSHHHHHH
T ss_pred             CCCccchHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCc-------ccccHHHHHH
Confidence                 25566667788888888888876322221111 1           1234889998752       2345666778


Q ss_pred             hcCeEEEcCCccCC-CCeEEEEeeCChHhHHHHHHHHHHH
Q 038416          341 EESVIILPGRTVGM-KNWLRIAFAAEPATLEDGLERIKAF  379 (387)
Q Consensus       341 ~~gi~v~~g~~~~~-~~~~Ri~~~~~~e~~~~~~~~l~~~  379 (387)
                      +.||....|..|+. ..++|||+-.++++++.++++|...
T Consensus       323 ~~~I~tr~G~~fga~~ryVRlSml~~~d~Fd~l~~rL~~l  362 (363)
T PF04864_consen  323 EAKIITRSGVLFGADSRYVRLSMLKRDDDFDQLLERLSKL  362 (363)
T ss_dssp             CTTEEEEEGGGGTS-TTEEEEESSS-HHHHHHHHHHHHCC
T ss_pred             hCCcccCCCCccCCCCCeEEEeccCCHHHHHHHHHHHHhh
Confidence            99999999999988 5799999999999999999998653

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.83  E-value=2.1e-17  Score=156.82  Aligned_cols=350  Identities=15%  Similarity=0.083  Sum_probs=204.8

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCC-CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPT-LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~-~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      .++|+.-|.-...-. -.+|.+.+++++++.....  +... ....+....+++.+.+.+. +.+-+.++++++|++|++
T Consensus        90 ~ylD~~sg~~~~~lG-h~hp~v~~Av~~ql~~~~~--~~~~~~~~~~~~~~lae~L~~~~~-~~~~~~v~f~~SGsEA~e  165 (504)
T PLN02760         90 KYLDALAGLWCTALG-GSEPRLVAAATEQLNKLPF--YHSFWNRTTKPSLDLAKELLEMFT-ARKMGKVFFTNSGSEAND  165 (504)
T ss_pred             EEEEcCcCHHhcccC-CCCHHHHHHHHHHHhhccc--eecccccCcHHHHHHHHHHHhhcC-CCCCCEEEEeCChHHHHH
Confidence            455554443222222 3678999999999876321  1111 1223445555555544321 122357899999999999


Q ss_pred             HHHHhhc------C-CC-CeEEEcCCCCcchHHHhhccCCCce------------eeeeccCCCCCcc-----------C
Q 038416           88 ISLSVLA------R-PG-ANILIPRPGYPLYEIHAAGSNNNLE------------ARHYDLLPEKRWE-----------V  136 (387)
Q Consensus        88 ~~~~~l~------~-~g-~~vl~~~p~~~~~~~~~~~~~~g~~------------~~~~~~~~~~~~~-----------~  136 (387)
                      .+++...      . ++ .+|+..+.+|++...... +..|..            +..++.+....+.           .
T Consensus       166 ~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~-slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  244 (504)
T PLN02760        166 TQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISA-SLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTR  244 (504)
T ss_pred             HHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhh-hccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHH
Confidence            9999863      1 23 678888988987643322 012211            1111111000000           0


Q ss_pred             ChhhHHHhhc---cCceEEEEeCC-CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCcc
Q 038416          137 DLDGVEALAD---ENTVAIVIINP-GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVP  211 (387)
Q Consensus       137 ~~~~l~~~~~---~~~~~v~l~~p-~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~  211 (387)
                      ..+++++.+.   ++..+.++..| +...|.. +|++.++++.++|++||+++|+||++.+|+..|..+. ...++-.  
T Consensus       245 ~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a-~e~~gv~--  321 (504)
T PLN02760        245 LADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFG-CDKYNIK--  321 (504)
T ss_pred             HHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhH-HHhcCCC--
Confidence            1234666553   23445566666 5566765 5677799999999999999999999998876665332 2222221  


Q ss_pred             EEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhh--------hhccCCcchHHHHHHHHHhhhccHHHHHHH
Q 038416          212 VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGC--------LNAASHPVTFIQAAVPRIVDETNEAFFAKI  283 (387)
Q Consensus       212 ~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  283 (387)
                       .-|.+++|.++...+++|.+++++        ++.+.+...        ...+++.++++.+++.+.|+...++   +.
T Consensus       322 -PDivtlgK~lggG~~PigAv~~~~--------~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~---~l  389 (504)
T PLN02760        322 -PDLVSLAKALSSAYMPIGAVLVSP--------EISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKER---NI  389 (504)
T ss_pred             -CcEEEecccccCCccccceEeecH--------HHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhC---CH
Confidence             225578899644335899999876        677766531        1245677898999888888764432   23


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCC-CCCCceEEEEEecCccccc-C-CCc----HHHHHHHHHHhcCeEEEcCCccCCCC
Q 038416          284 IGLLKETADICYERIKEIPCITCP-VKPQGAMFVMVKLNVSMLE-D-IGD----DLEFCLKLAKEESVIILPGRTVGMKN  356 (387)
Q Consensus       284 ~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~g~~~~~~~~~~~~~-~-~~~----~~~~~~~ll~~~gi~v~~g~~~~~~~  356 (387)
                      .++++++.+++++.|+++.....+ ....-|.++-+.+.....+ . ...    ...+... +.++||.+.+.     .+
T Consensus       390 ~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~-~~~~Gvl~~~~-----g~  463 (504)
T PLN02760        390 PEHVNKIAPRFQDGIKAFSGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAE-CKKRGMLVRVA-----GD  463 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHH-HHhCCcEEEec-----CC
Confidence            444555555555555443111111 1123356666666321110 0 000    2234444 46679998774     25


Q ss_pred             eEEEEee--CChHhHHHHHHHHHHHHHHhh
Q 038416          357 WLRIAFA--AEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       357 ~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      .+|+++.  +++++++++++++.+++++..
T Consensus       464 ~lrl~Ppl~it~eeid~~~~~l~~al~~~~  493 (504)
T PLN02760        464 NIMMSPPLIITPEEVDELISIYGKALKATE  493 (504)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            7899974  799999999999999997764

>PRK06541 hypothetical protein; Provisional

Probab=99.83  E-value=1.8e-17  Score=156.33  Aligned_cols=336  Identities=14%  Similarity=0.116  Sum_probs=203.1

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC--------CC
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR--------PG   97 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--------~g   97 (387)
                      .+|.+.+++++++.....  +.......+.+..+++.+.+..+  ...+.+++++++++|++.+++....        ..
T Consensus        69 ~~p~v~~Av~~q~~~~~~--~~~~~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r  144 (460)
T PRK06541         69 GRAELAEAAAKQAGTLAF--FPLWSYAHPPAIELAERLAALAP--GDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGK  144 (460)
T ss_pred             CCHHHHHHHHHHHhhCcC--ccccccCCHHHHHHHHHHHHhCC--CCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCc
Confidence            578899999999875321  11111112334445555544322  2236899999999999999987531        13


Q ss_pred             CeEEEcCCCCcchHHHhhccCCCc------------eeeeeccCCCCC---ccCC--------hhhHHHhhc---cCceE
Q 038416           98 ANILIPRPGYPLYEIHAAGSNNNL------------EARHYDLLPEKR---WEVD--------LDGVEALAD---ENTVA  151 (387)
Q Consensus        98 ~~vl~~~p~~~~~~~~~~~~~~g~------------~~~~~~~~~~~~---~~~~--------~~~l~~~~~---~~~~~  151 (387)
                      .+|+....+|++....+. +..+.            .+..+|.+....   +.-+        ++.+++.++   +...+
T Consensus       145 ~~ii~~~~~yHG~t~~a~-s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A  223 (460)
T PRK06541        145 HKVISRAIAYHGTTQGAL-AITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVA  223 (460)
T ss_pred             cEEEEEcCcccCcchhhh-cCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence            689999999987654333 01111            112222111000   1111        256666664   34566


Q ss_pred             EEEeCC-CCCccccCC-HHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCccccccccc-c
Q 038416          152 IVIINP-GNPCGNVFS-YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGW-R  228 (387)
Q Consensus       152 v~l~~p-~nptG~~~~-~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~-r  228 (387)
                      .++..| ++++|...+ .+.++++.++|++||+++|+||++.+|...|..+. ...++.... +  .+++|.++ +|+ +
T Consensus       224 avi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a-~~~~gv~PD-i--vt~gK~l~-~G~~p  298 (460)
T PRK06541        224 AVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFG-CERFGYVPD-I--ITCAKGIT-SGYSP  298 (460)
T ss_pred             EEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhh-hhhcCCCCC-E--EEeccccc-CCccc
Confidence            677777 888998754 78899999999999999999999988754444322 111221112 2  25899976 676 9


Q ss_pred             eEEEEeeCCCCcccchhHHHHHHhh----h-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 038416          229 LGWLVTSDPNGILQNSGFVDSIKGC----L-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPC  303 (387)
Q Consensus       229 ~G~i~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  303 (387)
                      +|++++++        ++.+.+...    . ..+++.++++.+++.+.|+...++   ...++++++.+++.+.|+++..
T Consensus       299 igav~~~~--------~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~~~---~~~~~~~~~g~~l~~~L~~l~~  367 (460)
T PRK06541        299 LGAMIASD--------RLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFERE---GLLDHVRDNEPAFRATLEKLLD  367 (460)
T ss_pred             eeEEEEcH--------HHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHhhc
Confidence            99999976        666666432    1 135567778887777777653322   3446666777777777766522


Q ss_pred             CCCC-CCCCceEEEEEecCccc--ccCCCc------HHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHH
Q 038416          304 ITCP-VKPQGAMFVMVKLNVSM--LEDIGD------DLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDG  372 (387)
Q Consensus       304 ~~~~-~~~~~g~~~~~~~~~~~--~~~~~~------~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~  372 (387)
                      ..++ .....|.++.+.+....  ...+..      ....+...+.++||.+.+...  ..+.+|+++.  +++++++++
T Consensus       368 ~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--g~~~lrl~Ppl~~t~~~id~~  445 (460)
T PRK06541        368 LPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRADDR--GDPVVQLAPPLISGQEEFDEI  445 (460)
T ss_pred             CCCeEEEEecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHhCCeEEEecCC--CCCEEEEECCCCCCHHHHHHH
Confidence            2211 12234666666663211  000000      011233344567999987311  1467999996  799999999


Q ss_pred             HHHHHHHHHHhh
Q 038416          373 LERIKAFCQRHA  384 (387)
Q Consensus       373 ~~~l~~~~~~~~  384 (387)
                      +++|.+++++..
T Consensus       446 ~~~l~~~l~~~~  457 (460)
T PRK06541        446 EQILRSVLTEAW  457 (460)
T ss_pred             HHHHHHHHHHHH
Confidence            999999997643

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.83  E-value=2.6e-17  Score=154.85  Aligned_cols=328  Identities=14%  Similarity=0.119  Sum_probs=199.8

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc----CCC-CeE
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA----RPG-ANI  100 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~----~~g-~~v  100 (387)
                      .+|.+.+|+++++.....  ++. ....+.+..+++.+....+  ...+.+++++++++|++.+++...    ++| .+|
T Consensus        99 ~~p~v~~Ai~~ql~~l~~--~~~-~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~~i  173 (459)
T PRK11522         99 RNPVVVSAVQNQLAKQPL--HSQ-ELLDPLRAMLAKTLAALTP--GKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTF  173 (459)
T ss_pred             CCHHHHHHHHHHHhhCcc--ccc-ccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCchHHHHHHHHHHHHHhccCCCcEE
Confidence            578899999999875321  111 1223445555555544332  233689999999999999999754    123 478


Q ss_pred             EEcCCCCcchHHHhhccCCCceeee---eccCCCCC--ccCChhhHHHhhcc-----CceEEEEeCC-CCCcccc-CCHH
Q 038416          101 LIPRPGYPLYEIHAAGSNNNLEARH---YDLLPEKR--WEVDLDGVEALADE-----NTVAIVIINP-GNPCGNV-FSYQ  168 (387)
Q Consensus       101 l~~~p~~~~~~~~~~~~~~g~~~~~---~~~~~~~~--~~~~~~~l~~~~~~-----~~~~v~l~~p-~nptG~~-~~~~  168 (387)
                      +....+|++...... +..+-....   .+..+.-.  .--|.+++++.++.     ...+.+++.| +...|.. .|++
T Consensus       174 i~~~~~yHG~t~~~l-s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~  252 (459)
T PRK11522        174 IATSGAFHGKSLGAL-SATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEG  252 (459)
T ss_pred             EEecCCCCCCcHHHh-hhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHH
Confidence            888999998654433 012211111   11111000  01156777776642     2334455555 6667775 5667


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccc-cceEEEEeeCCCCcccchhHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      .++++.++|++||+++|+||++.++...|..+. ...++-...   +-+++|.++ +| +++|.+++++        ++.
T Consensus       253 yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a-~e~~gv~PD---ivt~gK~lg-gG~~Pigav~~~~--------~i~  319 (459)
T PRK11522        253 YLTAVRKLCDEFGALLILDEVQTGMGRTGKMFA-CEHENVQPD---ILCLAKALG-GGVMPIGATIATE--------EVF  319 (459)
T ss_pred             HHHHHHHHHHHcCCEEEeccceecCCccchhhh-hhccCCCCC---EEEechhhh-CCCccceeEEEcH--------HHH
Confidence            799999999999999999999998765554322 111221112   337889964 55 6899999875        566


Q ss_pred             HHHHhh---hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc----CCC-CCCCCCCCceEEEEEe
Q 038416          248 DSIKGC---LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE----IPC-ITCPVKPQGAMFVMVK  319 (387)
Q Consensus       248 ~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~-~~~~~~~~~g~~~~~~  319 (387)
                      +.+...   ...+++.++.+.+++.+.|+...++.   ..++++++-+++++.|++    +|. +..+  ...|.++.+.
T Consensus       320 ~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~i~~V--rG~Gl~~gie  394 (459)
T PRK11522        320 SVLFDNPFLHTTTFGGNPLACAAALATINVLLEQN---LPAQAEQKGDYLLDGFRQLAREYPDLVQEA--RGKGMLMAIE  394 (459)
T ss_pred             HHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHhCCCceeeE--EeceeEEEEE
Confidence            655321   12455668888888888777644332   334455555555555554    332 1211  2346676776


Q ss_pred             cCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHhhh
Q 038416          320 LNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      +...     .....+...+ .++||.+.+...  ..+.+|+.+.  .+++++++++++|.++++++.+
T Consensus       395 l~~~-----~~~~~i~~~l-~~~Gvl~~~~~~--~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~~~~~  454 (459)
T PRK11522        395 FVDN-----EIGYNFASEM-FRQRVLVAGTLN--NAKTIRIEPPLTLTIEQCEQVLKAARKALAAMRV  454 (459)
T ss_pred             ecCc-----hHHHHHHHHH-HHCCeEEEecCC--CCCEEEEECCccCCHHHHHHHHHHHHHHHHHHHH
Confidence            6531     0123444544 567999876421  2478999984  6899999999999999987653

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.83  E-value=1.1e-17  Score=154.71  Aligned_cols=284  Identities=14%  Similarity=0.180  Sum_probs=184.7

Q ss_pred             CCEEEcCChH-HHHHHHHHhhcC---CCCeEEEcCCCCcchHHHhhccCCCceeeeecc-CCCCCccCChhhHHHhhcc-
Q 038416           74 EDVYLTLGCS-QAIEISLSVLAR---PGANILIPRPGYPLYEIHAAGSNNNLEARHYDL-LPEKRWEVDLDGVEALADE-  147 (387)
Q Consensus        74 ~~i~~~~g~~-~a~~~~~~~l~~---~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~-  147 (387)
                      ...++++++| .++.+++.++..   +||.|+++.-+|.+....+.  ..|++++.++. ...+++.+|++.|++++++ 
T Consensus       124 ~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~--~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~  201 (444)
T TIGR03531       124 KSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAIS--TAGFEPRVIETVLDGDELTTDVEDIERAIEEI  201 (444)
T ss_pred             CEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHH--HcCCeEEEeeeeecCcCCCcCHHHHHHHHHhc
Confidence            3588888888 688888877652   58999999999999999999  99999999985 3356789999999999976 


Q ss_pred             --CceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccc--cccCCCccEEEEecCccccc
Q 038416          148 --NTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPM--GVFGSIVPVITLGSISKRWI  223 (387)
Q Consensus       148 --~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~s~sK~~~  223 (387)
                        ++.++++.+|+  |+.....+++++|+++|++||+++|+|++|+....   ....+  .......-.+++.|++|.+.
T Consensus       202 ~~kai~~Vv~Tp~--t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~---~~~~~~~~g~~~Grad~vv~s~hK~l~  276 (444)
T TIGR03531       202 GPDNILCVLSTTS--CFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSN---KYMELINKAIKVGRVDAVVSSTDKNFM  276 (444)
T ss_pred             cCCCEEEEEEcCC--cCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcCh---hhhhhhhccccccCCCeEEEeCccCCC
Confidence              44566666664  44444458899999999999999999999995221   11111  11111001366789999988


Q ss_pred             ccccceEEEE-eeCCCCcccchhHHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 038416          224 VPGWRLGWLV-TSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIP  302 (387)
Q Consensus       224 ~~g~r~G~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  302 (387)
                      ++|.  |+++ +++       +++.+.+...... ...+.+.+.+...++. ...+.+.+..++..++++++.+.|+++.
T Consensus       277 ~pg~--Gg~I~~~d-------~el~~~i~~~y~g-~~~~s~~~~~~~~ll~-~G~~g~~~li~~~~~~a~~l~~~L~~l~  345 (444)
T TIGR03531       277 VPVG--GAIIYSFD-------ENFIQEISKSYPG-RASASPSLDVLITLLS-LGSKGYLELLKERKEMYKYLKELLQKLA  345 (444)
T ss_pred             CCCC--EEEEEECC-------HHHHHHHHHhccC-CCCChHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7765  5544 543       3677777654331 2233456666555554 4567788889999999999988888752


Q ss_pred             ---CCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeE----EEcCC-------cc---CC------CCeEE
Q 038416          303 ---CITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVI----ILPGR-------TV---GM------KNWLR  359 (387)
Q Consensus       303 ---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~----v~~g~-------~~---~~------~~~~R  359 (387)
                         |..+...|.....+.+.+....   ..+...+-.. |..++|.    |.+|.       .|   +.      ..++-
T Consensus       346 ~~~~~~~~~~~~n~is~~~~~~~~~---~~~~~~~g~~-l~~~~v~g~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~  421 (444)
T TIGR03531       346 ERHGERLLDTPENPISSAMTLSTLK---GKDPTMLGSM-LYSRRVTGPRVVTNGDSKTVGGCEFKGYGSHTSNYPCPYIT  421 (444)
T ss_pred             HhhCcEeecCCCCceeEEEeccccc---ccCHHHHHHH-HHhCCCCCceeecCCCceEECCEEeecccccccCCCchhHH
Confidence               3443323333333333443211   1133344443 4555552    33554       22   11      12444


Q ss_pred             EEe--eCChHhHHHHHHHHHHH
Q 038416          360 IAF--AAEPATLEDGLERIKAF  379 (387)
Q Consensus       360 i~~--~~~~e~~~~~~~~l~~~  379 (387)
                      ++.  +.+++|++..+++|.++
T Consensus       422 ~~~~~g~~~~~~~~~~~~l~~~  443 (444)
T TIGR03531       422 AAAAIGMTKEDVDTFVSRLEKS  443 (444)
T ss_pred             HHHHhCCcHHHHHHHHHHHhhc
Confidence            444  56899999999998765

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.82  E-value=6.6e-17  Score=151.93  Aligned_cols=346  Identities=17%  Similarity=0.122  Sum_probs=200.5

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      .++|..-|.-...-++ .+|.+.+++++++.+...  .....-..+....+|+.+....+. -..+.++++++|++|++.
T Consensus        55 ~ylD~~~g~~~~~lGh-~~p~v~~Ai~~ql~~~~~--~~~~~~~~~~~~~lAe~L~~~~p~-~~~~~v~f~~SGsEA~e~  130 (441)
T PRK05769         55 VYLDFNAGIAVTNVGH-AHPKVVKAVKEQAEKFLH--YSLTDFYYEPAVELAERLVEIAPG-GFEKKVFFTNSGTESNEA  130 (441)
T ss_pred             EEEECCCchhhcccCC-CCHHHHHHHHHHHHhccC--ccCcccCCHHHHHHHHHHHHhCCC-CCCCEEEECCchHHHHHH
Confidence            4555544432122122 568899999998875321  111111134455566666543321 113689999999999999


Q ss_pred             HHHhhc--CCCCeEEEcCCCCcchHHHhhccCCCc-------------eeeeeccCCCCC--cc---------CChhhHH
Q 038416           89 SLSVLA--RPGANILIPRPGYPLYEIHAAGSNNNL-------------EARHYDLLPEKR--WE---------VDLDGVE  142 (387)
Q Consensus        89 ~~~~l~--~~g~~vl~~~p~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~--~~---------~~~~~l~  142 (387)
                      +++...  ...++|+....+|++....+. +..+.             .+..++.+....  +.         ..++.++
T Consensus       131 AlklAr~~tgr~~Ii~~~~~yHG~t~~~l-s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le  209 (441)
T PRK05769        131 AIKIARYHTGRKYIIAFLGAFHGRTYGSL-SLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIE  209 (441)
T ss_pred             HHHHHHHHhCCCeEEEECCCcCCccHHHH-HhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHH
Confidence            998753  223688888999988664433 01111             112222211000  00         0123355


Q ss_pred             H-hhc----cCceEEEEeCC-CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEE
Q 038416          143 A-LAD----ENTVAIVIINP-GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITL  215 (387)
Q Consensus       143 ~-~~~----~~~~~v~l~~p-~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i  215 (387)
                      + .++    ++..+.++..| +...|.. .+.+.++++.++|++||+++|+||++.++...|..+. ...+.....++  
T Consensus       210 ~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a-~~~~gv~pDiv--  286 (441)
T PRK05769        210 DYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFA-IEHFGVEPDII--  286 (441)
T ss_pred             HHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceeh-hhccCCCCCEE--
Confidence            5 222    23445556666 5566775 5677799999999999999999999998766554322 11222212222  


Q ss_pred             ecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Q 038416          216 GSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICY  295 (387)
Q Consensus       216 ~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  295 (387)
                       +++|.++ .|+++|++++++        ++.+........+++.+++++.++.+.|+...+    +..++++++.++++
T Consensus       287 -t~~K~l~-~G~p~gav~~~~--------~i~~~~~~~~~~T~~g~p~~~aaa~a~L~~l~~----~~~~~~~~~g~~l~  352 (441)
T PRK05769        287 -TLAKAIA-GGLPLGAVIGRA--------ELMFLPPGSHANTFGGNPVAAAAALATLEELEE----GLLENAQKLGEYLR  352 (441)
T ss_pred             -EEccccc-CCcccEEEEEeh--------hhhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence             5789976 679999999876        444322222233556688888888888775433    33445555555555


Q ss_pred             HHhhc----CCCCCCCCCCCceEEEEEecCccc-ccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHh
Q 038416          296 ERIKE----IPCITCPVKPQGAMFVMVKLNVSM-LEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPAT  368 (387)
Q Consensus       296 ~~l~~----~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~  368 (387)
                      +.|++    ++.+.  ....-|.++.+.+.... .+.......+... +.++||.+.+..    .+.+|+++.  +++++
T Consensus       353 ~~L~~l~~~~~~~~--~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~Gil~~~~~----~~~lr~~p~l~~t~~~  425 (441)
T PRK05769        353 KELKELKEKYEFIG--DVRGLGLMIGVELVKDRKEPDPKLRDKVLYE-AFKRGLLLLGAG----KSAIRIIPPLIITEEE  425 (441)
T ss_pred             HHHHHHHHhCCCee--eeecceEEEEEEeccCCccccHHHHHHHHHH-HHhCCcEEecCC----CCEEEEeCCCCCCHHH
Confidence            55544    33222  12234666666663211 0000011234444 456799987642    367999985  48999


Q ss_pred             HHHHHHHHHHHHHHh
Q 038416          369 LEDGLERIKAFCQRH  383 (387)
Q Consensus       369 ~~~~~~~l~~~~~~~  383 (387)
                      ++++++++.+++++.
T Consensus       426 id~~~~~l~~~l~~~  440 (441)
T PRK05769        426 ADIGLEILEEAIKEL  440 (441)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998764

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.82  E-value=1.7e-17  Score=154.93  Aligned_cols=325  Identities=14%  Similarity=0.095  Sum_probs=193.7

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC----CC-CeE
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR----PG-ANI  100 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~----~g-~~v  100 (387)
                      .+|.+.+++++++.....  .+. ....+.+..+|+.+.+..+  ...+.+++++++++|++.+++....    .| .+|
T Consensus        92 ~hp~v~~Av~~ql~~l~~--~~~-~~~~~~~~~lAe~L~~~~p--~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~i  166 (442)
T TIGR03372        92 RNPNVIAAVENQLAKQPL--HSQ-ELLDPLRALLAKTLAALTP--GKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTF  166 (442)
T ss_pred             CCHHHHHHHHHHHHhCCC--ccc-ccCCHHHHHHHHHHHHhCC--CCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEE
Confidence            678899999998875321  111 1123444555555544332  1235799999999999999987542    24 679


Q ss_pred             EEcCCCCcchHHHhhccCC-Ccee---eeeccCCCCC--ccCChhhHHHhhcc-----CceEEEEeCC-CCCccccC-CH
Q 038416          101 LIPRPGYPLYEIHAAGSNN-NLEA---RHYDLLPEKR--WEVDLDGVEALADE-----NTVAIVIINP-GNPCGNVF-SY  167 (387)
Q Consensus       101 l~~~p~~~~~~~~~~~~~~-g~~~---~~~~~~~~~~--~~~~~~~l~~~~~~-----~~~~v~l~~p-~nptG~~~-~~  167 (387)
                      +....+|++......  .. +-..   ...|+.+.-.  ...|.+.+++.++.     ...+.++..| +...|... |+
T Consensus       167 i~~~~~yHG~t~~~l--s~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~  244 (442)
T TIGR03372       167 IAASGAFHGKSLGAL--SATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPE  244 (442)
T ss_pred             EEECCCccCCCHHHh--hccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCH
Confidence            999999988654433  22 2110   0111111000  01146666665531     3344455555 66677764 67


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccc-cceEEEEeeCCCCcccchhH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~  246 (387)
                      +.++++.++|++||+++|+||++.++...|..+. +..++-...   +.+++|.++ +| +++|.+++++        ++
T Consensus       245 ~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a-~e~~gv~PD---ivt~gK~lg-~G~~Pigavv~~~--------~i  311 (442)
T TIGR03372       245 GYLPAVRALCDEFGALLILDEVQTGMGRTGKMFA-CEHEGVQPD---ILCLAKALG-GGVMPIGATIATE--------AV  311 (442)
T ss_pred             HHHHHHHHHHHHcCCEEEEeecccCCCccccchh-hhhcCCCCC---eeeehhhhc-CCcccceEEEecH--------HH
Confidence            7799999999999999999999998765554322 111221111   335899964 56 6899999875        66


Q ss_pred             HHHHHhh---hhccCCcchHHHHHHHHHhhhccHHHHHHH-HHHHHHHHHHHHHHhhcCC-CCCCCCCCCceEEEEEecC
Q 038416          247 VDSIKGC---LNAASHPVTFIQAAVPRIVDETNEAFFAKI-IGLLKETADICYERIKEIP-CITCPVKPQGAMFVMVKLN  321 (387)
Q Consensus       247 ~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~g~~~~~~~~  321 (387)
                      .+.+...   ...+++.++.+.+++.+.|+..+++.+.++ .+.-...++.+.+..+++| .+..+  ...|.++.+.+.
T Consensus       312 ~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~~~i~~v--RG~Gl~~giel~  389 (442)
T TIGR03372       312 FSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFLLDGFQQLAAEYPDLIIEA--RGKGLLMAIEFR  389 (442)
T ss_pred             HHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCceEEE--ecceEEEEEEeC
Confidence            6666321   124566788888888888876443333222 2222233333333333344 22212  345777777775


Q ss_pred             cccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHH
Q 038416          322 VSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFC  380 (387)
Q Consensus       322 ~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~  380 (387)
                      ...     ....+...+ .++||++.+...  ..+.+|+.+.  .++++++++++++.+++
T Consensus       390 ~~~-----~~~~i~~~l-~~~Gvl~~~~~~--~~~~lr~~Ppl~~t~~~id~~~~~l~~~~  442 (442)
T TIGR03372       390 DNE-----IGYAFAKEL-FQQNILVAGTLN--NAKSIRIEPPLTITIEQCALVIKAAKDAL  442 (442)
T ss_pred             ChH-----HHHHHHHHH-HHCCcEEeecCC--CCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence            320     123455555 567999875321  1468999984  68999999999998763

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.82  E-value=7e-17  Score=151.63  Aligned_cols=331  Identities=15%  Similarity=0.109  Sum_probs=196.0

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC-------C-C
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR-------P-G   97 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-------~-g   97 (387)
                      .+|.+.+++++++.+-..  .+......+.+..+++.+.+..+  ..-+.+++++++++|++.+++....       + .
T Consensus        63 ~~p~v~~ai~~ql~~l~~--~~~~~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r  138 (442)
T PRK13360         63 GRPEIVEAVRAQAGELDY--APAFQMGHPKAFELANRIAEIAP--GGLNHVFFTNSGSESVDTALKIALAYHRARGEGSR  138 (442)
T ss_pred             CCHHHHHHHHHHHHhCCC--cccCCcCCHHHHHHHHHHHHhCC--CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCC
Confidence            678899999999875211  11111122444455555544332  2236899999999999999987531       2 2


Q ss_pred             CeEEEcCCCCcchHHHhhccCCCc------------eeeeeccCC--C-CCccC--------ChhhHHHhhc---cCceE
Q 038416           98 ANILIPRPGYPLYEIHAAGSNNNL------------EARHYDLLP--E-KRWEV--------DLDGVEALAD---ENTVA  151 (387)
Q Consensus        98 ~~vl~~~p~~~~~~~~~~~~~~g~------------~~~~~~~~~--~-~~~~~--------~~~~l~~~~~---~~~~~  151 (387)
                      .+|+....+|++....+. +..|.            .+..+|...  . ..+..        .++.+++.+.   +...+
T Consensus       139 ~~ii~~~~~yHG~t~gal-s~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~a  217 (442)
T PRK13360        139 TRLIGRERGYHGVGFGGI-SVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLHDASTIA  217 (442)
T ss_pred             cEEEEEcCCcCCccHhhh-hccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhcCCCcEE
Confidence            589999999998643221 01111            112222210  0 00111        1346677664   23345


Q ss_pred             EEEeCC-CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCCccEEEEecCcccccccccc
Q 038416          152 IVIINP-GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVITLGSISKRWIVPGWR  228 (387)
Q Consensus       152 v~l~~p-~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~s~sK~~~~~g~r  228 (387)
                      .+++.| +...|.. .|.+.+++|.++|++||+++|+||++.++...|..... .....+|     +.+++|.++...++
T Consensus       218 avivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PD-----ivt~gK~l~gG~~P  292 (442)
T PRK13360        218 AVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPD-----LLTCAKGLTNGAIP  292 (442)
T ss_pred             EEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCc-----eeeeeeccccCccc
Confidence            556666 6667776 56777999999999999999999999887655543221 1122222     33789996443378


Q ss_pred             eEEEEeeCCCCcccchhHHHHHHhh--------hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc
Q 038416          229 LGWLVTSDPNGILQNSGFVDSIKGC--------LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE  300 (387)
Q Consensus       229 ~G~i~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  300 (387)
                      +|.+++++        ++.+.+...        ...+++.++++.+++.+.|+...++   ...++.+++.+++.+.|++
T Consensus       293 ~gav~~~~--------~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~l~~  361 (442)
T PRK13360        293 MGAVFVSS--------EIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYERE---GLLTRAARLAPYWEDALHS  361 (442)
T ss_pred             eEEEEEcH--------HHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHH
Confidence            99999875        666655421        1245677888888888877754333   2334555555566666654


Q ss_pred             CCCCCCCC-CCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHH
Q 038416          301 IPCITCPV-KPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIK  377 (387)
Q Consensus       301 ~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~  377 (387)
                      +.....+. ...-|.+.-+.+............++...+ .++||.+.++     .+.+|+++  ..+++++++++++|.
T Consensus       362 l~~~~~v~~vrG~Gl~~~~~l~~~~~~~~~~~~~~~~~l-~~~Gvl~~~~-----~~~lr~~Ppl~~t~~eid~~~~~l~  435 (442)
T PRK13360        362 LRDAPHVIDIRNLGLVGAVELAPRDGKPGKRAYEVFLKC-FEKGLMIRYT-----GDILALSPPLIIEEAQIDELFDILA  435 (442)
T ss_pred             hhcCCCeeeeeccceEEEEEEecCCCCcchhHHHHHHHH-HHCCcEEEec-----CCEEEEeCCCccCHHHHHHHHHHHH
Confidence            32111111 122344444444221110001123455554 5679998764     36799997  468999999999999


Q ss_pred             HHHHHh
Q 038416          378 AFCQRH  383 (387)
Q Consensus       378 ~~~~~~  383 (387)
                      ++++++
T Consensus       436 ~~l~~~  441 (442)
T PRK13360        436 QALKET  441 (442)
T ss_pred             HHHHHh
Confidence            998764

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.82  E-value=2.8e-17  Score=164.37  Aligned_cols=305  Identities=10%  Similarity=0.024  Sum_probs=205.5

Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCEEEcCChH----HHHHHHHHhhcCC-CC----eEEEcCCCCcchHHHhhccCCCceee
Q 038416           54 SARRGIADYLNRDLPYKLSPEDVYLTLGCS----QAIEISLSVLARP-GA----NILIPRPGYPLYEIHAAGSNNNLEAR  124 (387)
Q Consensus        54 ~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~----~a~~~~~~~l~~~-g~----~vl~~~p~~~~~~~~~~~~~~g~~~~  124 (387)
                      ++|+.+++++    |    .+.|.++++++    .++..+++.+.++ ||    .|+++...|......+.  ..|++++
T Consensus       572 ~~r~~la~i~----g----~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~--~~G~~vv  641 (993)
T PLN02414        572 DLGDLLCEIT----G----FDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAA--MCGMKIV  641 (993)
T ss_pred             HHHHHHHHHh----C----CCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHH--HCCCEEE
Confidence            4555555555    3    38999999988    8999999999866 87    89999999998888888  7899999


Q ss_pred             eeccCCCCCccCChhhHHHhhcc---CceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCc
Q 038416          125 HYDLLPEKRWEVDLDGVEALADE---NTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYV  201 (387)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~~~~~~---~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~  201 (387)
                      .++.+.  +..+|+++|++++++   ++++|++++|+|-+|...+   +++|+++|+++|+++++|.++.....   ...
T Consensus       642 ~v~~d~--~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~---I~eI~~iah~~Galv~vDgAq~~a~~---~l~  713 (993)
T PLN02414        642 VVGTDA--KGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEG---IDEICDIIHDNGGQVYMDGANMNAQV---GLT  713 (993)
T ss_pred             EeccCC--CCCcCHHHHHHHHhccCCCeEEEEEECCCccccccch---HHHHHHHHHHcCCEEEEEecCHHhcc---CcC
Confidence            999853  347899999999984   6789999999999988844   89999999999999999999964110   122


Q ss_pred             cccccCCCccEEEEecCccccc----ccccceEEEEeeCCCCcccchhHH--H---HHHhhhhc-cCC------cchHHH
Q 038416          202 PMGVFGSIVPVITLGSISKRWI----VPGWRLGWLVTSDPNGILQNSGFV--D---SIKGCLNA-ASH------PVTFIQ  265 (387)
Q Consensus       202 ~~~~~~~~~~~~~i~s~sK~~~----~~g~r~G~i~~~~~~~~~~~~~~~--~---~~~~~~~~-~~~------~~~~~~  265 (387)
                      ....++.|   ++++|.+|+|+    .+|..+|++.+++.- .-.-|-..  .   ..+..... ..+      .+....
T Consensus       714 ~p~~~GaD---~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L-~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l  789 (993)
T PLN02414        714 SPGFIGAD---VCHLNLHKTFCIPHGGGGPGMGPIGVKKHL-APFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALIL  789 (993)
T ss_pred             CccccCCC---EEEecCCccCCcCcccCCCCeeeEEEchhh-cccCCCCccccCCCcccccCCCCcCCccchhhhhHHHH
Confidence            23344444   88899999765    345668999876511 10001000  0   00000100 011      111223


Q ss_pred             HHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEE--EEEecCcccccC--CCcHHHHHHHHHHh
Q 038416          266 AAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMF--VMVKLNVSMLED--IGDDLEFCLKLAKE  341 (387)
Q Consensus       266 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~--~~~~~~~~~~ll~~  341 (387)
                      .++..++...+.+.+++..+....+++++++.|++..++.+. .|.+..+  +.+.+..  ++.  ..+..++...|+ +
T Consensus       790 ~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~-~~~~~~~hEfv~~~~~--l~~~~g~~~~di~krL~-d  865 (993)
T PLN02414        790 PISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGHYPVLFR-GKNGTCAHEFIIDLRP--FKNTAGIEPEDVAKRLM-D  865 (993)
T ss_pred             HHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhhCCcccc-CCCCCeeeeEEEeccc--cccccCCCHHHHHHHHH-H
Confidence            333444555556788888899999999999999874344422 2322211  2233331  111  124467777776 7


Q ss_pred             cCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHHHHhhh
Q 038416          342 ESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       342 ~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      +||.... ..|...+++||++  ..+++++++.++.+..+.++..+
T Consensus       866 ~Gihapt-~~~pv~~~lmiepTE~~skeelDrf~~al~~i~~e~~~  910 (993)
T PLN02414        866 YGFHAPT-MSWPVPGTLMIEPTESESKAELDRFCDALISIREEIAD  910 (993)
T ss_pred             cCcEEee-eccccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence            8997654 3344578999999  46889999999999888877653

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.82  E-value=1.2e-17  Score=153.41  Aligned_cols=313  Identities=14%  Similarity=0.070  Sum_probs=196.0

Q ss_pred             CCcHHHHHHHHHHhcCCC-CCCCCC--CCCcHHHHHHHHHHHhhcCCCCCC-CCCEEEc-CChHHHHHHHHHhhcCCCCe
Q 038416           25 SDSTVAEDAVVDALRTAH-YNCYSP--TLGVPSARRGIADYLNRDLPYKLS-PEDVYLT-LGCSQAIEISLSVLARPGAN   99 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~-~~~y~~--~~~~~~lr~~ia~~~~~~~~~~~~-~~~i~~~-~g~~~a~~~~~~~l~~~g~~   99 (387)
                      ..++.+++++.+....-. .+++++  ..-..+.|+.++++++      ++ ..+|+++ +|+|.+++.++.+++.+ +.
T Consensus        13 ~~~~~v~~a~~~~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~------~~~~~~v~f~~gs~T~a~~~~~~~l~~~-~~   85 (361)
T TIGR01366        13 KVRLEQLQALTTTAASLFGTSHRQAPVKNLVGRVREGLAELFS------LPDGYEVILGNGGATAFWDAATFGLIEK-KS   85 (361)
T ss_pred             CCCHHHHHHHHhcCccccccCcCChHHHHHHHHHHHHHHHHhC------CCCCceEEEECCchhHHHHHHHHhcccc-cc
Confidence            578899998875421110 124443  2345677888888873      33 3478775 66999999999999743 33


Q ss_pred             EEEcCCCCc-chHHHhhccC--CCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHH
Q 038416          100 ILIPRPGYP-LYEIHAAGSN--NNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIART  176 (387)
Q Consensus       100 vl~~~p~~~-~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~  176 (387)
                      +++..-.|. .+...+.  .  .+.++..++...  +..++     ..+++++++|.+++..|.||+..|.++   |   
T Consensus        86 l~i~~G~~~~~~~~~a~--~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~lV~~~h~et~tG~~~pi~~---I---  150 (361)
T TIGR01366        86 LHLSFGEFSSKFAKAVK--LAPWLGEPIIVTADP--GSAPE-----PQADPGVDVIAWAHNETSTGVAVPVRR---P---  150 (361)
T ss_pred             cEEecCHHHHHHHHHHH--hhhccCCceEEecCC--CCCCC-----CccCCCCCEEEEcccCCccceeccccc---c---
Confidence            334343443 2333444  3  123566665432  22222     235678999999999999999988544   4   


Q ss_pred             HHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHh----
Q 038416          177 ARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKG----  252 (387)
Q Consensus       177 ~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~----  252 (387)
                      ++++|+++|+|.+++.    +..+..+..  .   .+++.|.+|+++.+|. ++.++.++        +.++++..    
T Consensus       151 ~~~~g~~~iVDavqs~----g~~~idv~~--~---D~~~~s~~K~lg~~~G-l~~~~~s~--------~~~~~~~~~~~~  212 (361)
T TIGR01366       151 EGSDDALVVIDATSGA----GGLPVDIAE--T---DVYYFAPQKNFASDGG-LWLAIMSP--------AALERIEAIAAS  212 (361)
T ss_pred             cccCCCeEEEEcCccc----cCCCCCHHH--C---CEEEEEchhhcCCCCc-eEEEEECH--------HHHhhhhcccCC
Confidence            4789999999999985    223333332  2   3788999999987742 55555544        22222220    


Q ss_pred             ----------------h--hhccCCcchHHHHHHHHHhhhccHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC--
Q 038416          253 ----------------C--LNAASHPVTFIQAAVPRIVDETNEA-FFAKIIGLLKETADICYERIKEIPCITCPVKPQ--  311 (387)
Q Consensus       253 ----------------~--~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--  311 (387)
                                      .  ....++++.....++..+++...+. .++.+.++.++.++++++.+++++.+.......  
T Consensus       213 ~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~  292 (361)
T TIGR01366       213 GRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGK  292 (361)
T ss_pred             CCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhh
Confidence                            0  0123455555555667777665444 477888999999999999999986555331111  


Q ss_pred             -ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHh
Q 038416          312 -GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       312 -~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                       ......+.++.    + .+..++...| +++||.+.++......+.+|||+.  .+.++++++++.|+++++++
T Consensus       293 ~s~~v~~v~~~~----g-~~~~~v~~~L-~~~gI~i~~~~~~l~~~~vRis~~~~~t~~di~~l~~al~~~~~~~  361 (361)
T TIGR01366       293 RSQVVGTIDFVD----D-IDAATVAKIL-RANGIVDTEPYRKLGRNQLRVAMFPAIDPDDVEALTECVDWVVERL  361 (361)
T ss_pred             cccceEEEECCC----c-cCHHHHHHHH-HHCCCeeccCccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhhC
Confidence             11112233332    1 2455666666 667999987653333578999993  58999999999999988764

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=99.81  E-value=3e-17  Score=142.63  Aligned_cols=324  Identities=17%  Similarity=0.126  Sum_probs=219.8

Q ss_pred             CCCCCCcHHHHHHHHHHhcCC------CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc
Q 038416           21 VSLLSDSTVAEDAVVDALRTA------HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA   94 (387)
Q Consensus        21 ~~~~~~~~~v~~a~~~~~~~~------~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~   94 (387)
                      |.+...+|.|++||++.++.-      +.+--+...-..+|++++|++.        .++..++.+++--|+...+..|.
T Consensus       181 YLgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LH--------qK~aALlFsSCfVANDstLftLa  252 (570)
T KOG1360|consen  181 YLGMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLH--------QKEAALLFSSCFVANDSTLFTLA  252 (570)
T ss_pred             cccccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHh--------cCcceeeeeeeeeccchHHHHHH
Confidence            446789999999999999862      1122223345679999999998        34555555566667777777764


Q ss_pred             C--CCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc----CceEEEEeCCCCCccccCCHH
Q 038416           95 R--PGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE----NTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        95 ~--~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~v~l~~p~nptG~~~~~~  168 (387)
                      +  ||=.|....-.|-+.....+  ..+.+-+.+..    +   |++.|++.+..    -+|+|.+...++.+|.+-|  
T Consensus       253 k~lpgcei~SD~gNHASMI~GIr--ns~v~K~IFrH----N---D~~hL~~lL~~~~~svPKivAFEtVhSM~Gavcp--  321 (570)
T KOG1360|consen  253 KKLPGCEIFSDEGNHASMIQGIR--NSRVPKHIFRH----N---DLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCP--  321 (570)
T ss_pred             HHCCCcEEeccccchHHHHHHhh--hcCCcceeecc----C---CHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCC--
Confidence            3  66666677777878888888  77766544432    2   67777776642    4688889999999999977  


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCcccccc-CCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF-GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                       +++|.+++++||++-++||+++...|+.++..--..- -.+.-.++.+++.|+||.-|   |||.+..        .++
T Consensus       322 -leelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcVG---GYIAat~--------~Lv  389 (570)
T KOG1360|consen  322 -LEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCVG---GYIAATR--------KLV  389 (570)
T ss_pred             -HHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhccccc---ceehhhh--------hHH
Confidence             8888999999999999999999666654322211000 01122377899999998877   9998876        799


Q ss_pred             HHHHhhhh---ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccc
Q 038416          248 DSIKGCLN---AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSM  324 (387)
Q Consensus       248 ~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~  324 (387)
                      +.++.+..   ++.+.+|.....+.++++...-+.=...++..+++..++++.|.++ |+.++  |.....+-+++... 
T Consensus       390 DmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~-GiPVi--~~pSHIiPv~vgda-  465 (570)
T KOG1360|consen  390 DMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMEL-GIPVI--PNPSHIIPVRVGDA-  465 (570)
T ss_pred             HHHHHhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHc-CCccc--CCCcceeeeeccCH-
Confidence            99998853   2334444444444444443221212344566677888899999888 77743  44444444444321 


Q ss_pred             ccCCCcHHHHHHHHHHhcCeEEEcCCccCC---CCeEEEEe--eCChHhHHHHHHHHHHHHHHh
Q 038416          325 LEDIGDDLEFCLKLAKEESVIILPGRTVGM---KNWLRIAF--AAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       325 ~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~  383 (387)
                          .-..+..+.|+.++||.+-.-.+...   ...+||.+  +.+++.++.+++.+..+..++
T Consensus       466 ----~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v  525 (570)
T KOG1360|consen  466 ----ALAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLDVWNEV  525 (570)
T ss_pred             ----HHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence                12457788899999999986544322   35789988  468888888889888877654

>PRK07678 aminotransferase; Validated

Probab=99.81  E-value=1e-16  Score=151.10  Aligned_cols=336  Identities=15%  Similarity=0.114  Sum_probs=196.4

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC-------CC-
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR-------PG-   97 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-------~g-   97 (387)
                      .+|.+.+++++++.....  ++... ..+.+..+++.+.+..+   ..+.+++++++++|++.+++....       +| 
T Consensus        64 ~~p~v~~ai~~q~~~~~~--~~~~~-~~~~~~~lae~l~~~~~---~~~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r  137 (451)
T PRK07678         64 GRKELAEAAYEQLKTLSY--FPLTQ-SHEPAIKLAEKLNEWLG---GEYVIFFSNSGSEANETAFKIARQYHAQKGEPHR  137 (451)
T ss_pred             CCHHHHHHHHHHHHhcCc--ccccc-CCHHHHHHHHHHHHhCC---CCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCC
Confidence            578889999998875321  11111 12334445555544332   235899999999999999988531       23 


Q ss_pred             CeEEEcCCCCcchHHHhhccCCCc------------eeeeeccCCCCC--cc-----CC---hhhHHHhhc---cCceEE
Q 038416           98 ANILIPRPGYPLYEIHAAGSNNNL------------EARHYDLLPEKR--WE-----VD---LDGVEALAD---ENTVAI  152 (387)
Q Consensus        98 ~~vl~~~p~~~~~~~~~~~~~~g~------------~~~~~~~~~~~~--~~-----~~---~~~l~~~~~---~~~~~v  152 (387)
                      .+|+....+|++....+. +..+.            .+..++.+....  +.     .+   ++.+++.++   +...+.
T Consensus       138 ~~ii~~~~~yHG~t~~al-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAA  216 (451)
T PRK07678        138 YKFISRYRAYHGNSMGAL-AATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSETIAA  216 (451)
T ss_pred             cEEEEECCCcCCccHHHh-hcCCCcccccccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhcCCCceEE
Confidence            678999999998654333 01111            112222111000  00     01   223455553   234455


Q ss_pred             EEeCC-CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceE
Q 038416          153 VIINP-GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLG  230 (387)
Q Consensus       153 ~l~~p-~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G  230 (387)
                      ++..| +...|.. +|++.++++.++|++||+++|+||++.+|...|..+. +..++-...   +-+++|.++...+++|
T Consensus       217 vi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~-~~~~gv~PD---ivt~gK~lggG~~Pi~  292 (451)
T PRK07678        217 VIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFG-FMNYGVKPD---IITMAKGITSAYLPLS  292 (451)
T ss_pred             EEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHH-HHhcCCCCC---EEEeecccccCCccee
Confidence            66666 5556765 5777799999999999999999999999876654222 122222212   3367899654337999


Q ss_pred             EEEeeCCCCcccchhHHHHHHhh-------hhccCCcchHHHHHHHHHhhhccHHHH-HHHHHHHHHHHHHHHHHhhcCC
Q 038416          231 WLVTSDPNGILQNSGFVDSIKGC-------LNAASHPVTFIQAAVPRIVDETNEAFF-AKIIGLLKETADICYERIKEIP  302 (387)
Q Consensus       231 ~i~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~  302 (387)
                      .+++++        ++.+.+...       ...+++.++.+.+++.+.|+...++.+ ++..+.-...++.+.+.+++++
T Consensus       293 av~~~~--------~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~~~~~~~  364 (451)
T PRK07678        293 ATAVKK--------EIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHP  364 (451)
T ss_pred             EEEEcH--------HHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999976        677766531       135677889999988888876443322 2222222333444444444444


Q ss_pred             CCCCCCCCCceEEEEEecCccc---ccC-CCcHHHHHHHHHHhcCeEEEcCCcc--CCCCeEEEEee--CChHhHHHHHH
Q 038416          303 CITCPVKPQGAMFVMVKLNVSM---LED-IGDDLEFCLKLAKEESVIILPGRTV--GMKNWLRIAFA--AEPATLEDGLE  374 (387)
Q Consensus       303 ~~~~~~~~~~g~~~~~~~~~~~---~~~-~~~~~~~~~~ll~~~gi~v~~g~~~--~~~~~~Ri~~~--~~~e~~~~~~~  374 (387)
                      .+..  ...-|.++.+.+....   .+. ......+...+ .++||.+.+....  ...+.+|+++.  +++++++++++
T Consensus       365 ~v~~--vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l-~~~Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~  441 (451)
T PRK07678        365 LVGD--IRGKGLLVGIELVNDKETKEPADNDKVASVVAAC-KEKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVG  441 (451)
T ss_pred             CEEE--EEeeceEEEEEEecCCcccCcCchHHHHHHHHHH-HHCCcEEeecCccccCCCCEEEEECCCcCCHHHHHHHHH
Confidence            2221  2234556556553211   000 00122344444 5679998763211  22467999984  58999999999


Q ss_pred             HHHHHHHHh
Q 038416          375 RIKAFCQRH  383 (387)
Q Consensus       375 ~l~~~~~~~  383 (387)
                      ++.++++++
T Consensus       442 ~l~~~l~~~  450 (451)
T PRK07678        442 TLKTALERI  450 (451)
T ss_pred             HHHHHHHhc
Confidence            999998765

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.81  E-value=2.6e-17  Score=150.17  Aligned_cols=307  Identities=12%  Similarity=0.114  Sum_probs=194.2

Q ss_pred             CcHHHHHHHHHHhcCCCCC--CCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc-CCC-CeEE
Q 038416           26 DSTVAEDAVVDALRTAHYN--CYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA-RPG-ANIL  101 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~--~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~g-~~vl  101 (387)
                      .+|.+.+++++++.+....  .|. .....++.+.++++.        ..+.+++++++++|++.+++... ..| ++|+
T Consensus        41 ~~p~v~~ai~~ql~~~~~~~~~~~-~~~~~~la~~l~~~~--------~~~~v~~~~SGseA~e~Alklar~~~gr~~Ii  111 (364)
T PRK04013         41 NHPEWVEEMSEQLEKLVVAGPMFE-HEEKEEMLEELSKWV--------NYEYVYMGNSGTEAVEAALKFARLYTGRKEII  111 (364)
T ss_pred             CCHHHHHHHHHHHHhcCCccCCcC-CHHHHHHHHHHHhhc--------CCCEEEEeCchHHHHHHHHHHHHHHhCCCEEE
Confidence            4578889999998863211  122 122234444444443        23689999999999999999864 345 7899


Q ss_pred             EcCCCCcchHHHhhccC-CC-------ceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCcccc-CCHHHHHH
Q 038416          102 IPRPGYPLYEIHAAGSN-NN-------LEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNV-FSYQHLQK  172 (387)
Q Consensus       102 ~~~p~~~~~~~~~~~~~-~g-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~-~~~~~~~~  172 (387)
                      ....+|++......  . .+       ..+....+.. ..+ .|++.+++.+.+++.+|++...+...|.. .|.+.+++
T Consensus       112 ~~~~syHG~t~~~l--s~~~~~~~~~~~~p~~~~~~~-~~~-~d~~~l~~~i~~~~aAvivEpi~g~gG~~~~~~~yl~~  187 (364)
T PRK04013        112 AMTNAFHGRTMGAL--SATWKPKYREDFEPLVPGFKH-IPF-NDVEAAKEAITKETAAVIFEPIQGEGGIVPAKEEFVKT  187 (364)
T ss_pred             EECCccccCchhhc--cCCCCcccccCCCCCCCCcEE-ecC-CCHHHHHHHhcCCcEEEEEcCCcCCCCCcCCCHHHHHH
Confidence            99999988653333  2 11       1111000000 011 15788888887777777766666666765 46677999


Q ss_pred             HHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHh
Q 038416          173 IARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKG  252 (387)
Q Consensus       173 l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~  252 (387)
                      +.++|++||+++|+||++.++ ..|.... ...++-..+   +.+++|.++ .|+++|.++.+.        ++ ..  .
T Consensus       188 lr~lc~~~gillI~DEv~tG~-RtG~~~a-~~~~gv~PD---iv~~gK~lg-gG~P~~a~~~~~--------~~-~~--~  250 (364)
T PRK04013        188 LRDLTEDVGALLIADEVQSGL-RTGKFLA-IEHYKVEPD---IVTMGKGIG-NGVPVSLTLTNF--------DV-ER--G  250 (364)
T ss_pred             HHHHHHHcCCEEEEechhhcC-CCCchhH-HHhcCCCCC---EEEeccccc-CCceeEEEEecc--------cc-cC--C
Confidence            999999999999999999987 5554222 222222222   335689965 479999999865        22 11  1


Q ss_pred             hhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHH
Q 038416          253 CLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDL  332 (387)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  332 (387)
                      ....+++.++.+.+++.+.|+..+++.+.++.+..      + +.++. +.+..  ...-|.++-+.+..       ...
T Consensus       251 ~~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~~------l-~~l~~-~~v~~--vRG~Gl~~gve~~~-------~~~  313 (364)
T PRK04013        251 KHGSTFGGNPLACKAVAVTLRILRRERLVEKAGEK------F-IEIKG-ERVVT--TRGRGLMIGIVLKK-------PVG  313 (364)
T ss_pred             CcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHH------H-HHhcc-Cccee--eeeCcEEEEEEeCC-------cHH
Confidence            12346778999999988888765544443333221      2 22222 22221  23447777777742       233


Q ss_pred             HHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHhh
Q 038416          333 EFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       333 ~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      .+... +.++|+.+.+..    .+.+|+.+.  .+++++++++++|.+++.+..
T Consensus       314 ~i~~~-~~~~Gll~~~~g----~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~~~  362 (364)
T PRK04013        314 KYVEE-LQNRGYLVHTAG----QRVIRLLPPLIISKDTMEEAKSAIEGVINDIL  362 (364)
T ss_pred             HHHHH-HHhCCcEEeeCC----CCEEEEeCCcccCHHHHHHHHHHHHHHHHHHh
Confidence            45444 466799987642    478999994  689999999999999998754

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=99.81  E-value=2e-18  Score=147.24  Aligned_cols=346  Identities=17%  Similarity=0.169  Sum_probs=240.0

Q ss_pred             ccccCCCCCCCCCCCCCC-CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEc--CChHH
Q 038416            8 ETRHSPWPRRPLGVSLLS-DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLT--LGCSQ   84 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~--~g~~~   84 (387)
                      .+++|+..|--+.+..-| +-+.|++|-++....+....|-+..|.+++.+..++++-.......+.++|+.+  -++|.
T Consensus        52 ~~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~~~ldKEYlpI~Gl~eF~k~sakLa~G~~s~~ik~~Ri~tvQ~lSGTG  131 (427)
T KOG1411|consen   52 PKKINLGVGAYRDDNGKPYVLPSVRKAEQQLASLSLDKEYLPITGLAEFNKLSAKLALGDNSPVIKEKRIVTVQTLSGTG  131 (427)
T ss_pred             cceeeecccceecCCCCeeeeHHHHHHHHHHhhhcccchhccccchHHHHHHHHHHhhcCCchhhhccceeEEEeccCcc
Confidence            366777777554444444 778888888887776556789999999999999999885433333345567654  56788


Q ss_pred             HHHHHHHhhc--CCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccC-ceEEEEeC--CCC
Q 038416           85 AIEISLSVLA--RPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADEN-TVAIVIIN--PGN  159 (387)
Q Consensus        85 a~~~~~~~l~--~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~l~~--p~n  159 (387)
                      ++.+....|.  -++..|.++.|+|.+......  ..|+.+..+.......-++|.+.+.+-+..- ...+++.+  .||
T Consensus       132 aLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~--~ag~~~~~yrYyd~~t~gld~~g~ledl~~~p~gs~ilLhaCaHN  209 (427)
T KOG1411|consen  132 ALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFK--DAGLPVKFYRYYDPKTRGLDFKGMLEDLGEAPEGSIILLHACAHN  209 (427)
T ss_pred             hhhHHHHHHHhhccccceeecCCcccccCcccc--ccCcceeeeeeccccccccchHHHHHHHhcCCCCcEEEeehhhcC
Confidence            8888877764  468899999999999999999  9999987776543444577877766555331 12233443  499


Q ss_pred             CccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCC--CccccccC-CCccEEEEecCcccccccccceEEE--Ee
Q 038416          160 PCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTP--YVPMGVFG-SIVPVITLGSISKRWIVPGWRLGWL--VT  234 (387)
Q Consensus       160 ptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~--~~~~~~~~-~~~~~~~i~s~sK~~~~~g~r~G~i--~~  234 (387)
                      |||+-.+.+++++|.++.++.+.+-++|-+|++|.-+.-.  ...++.+. ...++++..|++|.+|+-|-|+|.+  ++
T Consensus       210 PTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLYgERvGa~svvc  289 (427)
T KOG1411|consen  210 PTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLYGERVGALSVVC  289 (427)
T ss_pred             CCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcchhhhccceeEEEe
Confidence            9999999999999999999999999999999997644311  11122221 2345788899999999999999985  55


Q ss_pred             eCCCCcccchhHHHHHHh----h-hhccCCcchHHHHHHHHHhhhcc--HHHH---HHHHHHHHHHHHHHHHHhhcC--C
Q 038416          235 SDPNGILQNSGFVDSIKG----C-LNAASHPVTFIQAAVPRIVDETN--EAFF---AKIIGLLKETADICYERIKEI--P  302 (387)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~l~~~~--~~~~---~~~~~~~~~~~~~~~~~l~~~--~  302 (387)
                      .++       +...++..    . +...++|+..+...+..+|++..  .+|+   +-+.+++...|..+.+.|+..  +
T Consensus       290 ~~a-------d~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~d~L~~~gs~  362 (427)
T KOG1411|consen  290 KDA-------DEAKRVESQLKILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVKGMADRIISMRQQLFDALEKEGSP  362 (427)
T ss_pred             cCH-------HHHHHHHHHHHHHhcccccCCCccchhhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHhHHhhcCCCC
Confidence            442       33333332    2 22445677777888888888743  3333   445577777777787877763  1


Q ss_pred             -CCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe-eCChHhHHHHHHHHHHHH
Q 038416          303 -CITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF-AAEPATLEDGLERIKAFC  380 (387)
Q Consensus       303 -~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~-~~~~e~~~~~~~~l~~~~  380 (387)
                       +|..+ ..+-|+|++..+.          .+.++.+.+++-|....-+        |||+ +.+...+..+.+.|.++.
T Consensus       363 ~~W~hI-~~QIGMF~fTgl~----------peQv~~l~ke~~iYmT~dG--------RiS~aG~ss~nV~yLa~aih~vt  423 (427)
T KOG1411|consen  363 GNWSHI-TKQIGMFCFTGLN----------PEQVDWLTKEYHIYLTKDG--------RISMAGLSSSNVPYLADAIHAVT  423 (427)
T ss_pred             ccHHHH-HHhhheeeecCCC----------HHHHHHHHhhheeeeccCc--------eEeeccccccCCcccchhhHhHh
Confidence             34423 4567999887664          3566778788887765321        9999 567777777777776654


Q ss_pred             H
Q 038416          381 Q  381 (387)
Q Consensus       381 ~  381 (387)
                      +
T Consensus       424 k  424 (427)
T KOG1411|consen  424 K  424 (427)
T ss_pred             c
Confidence            3

>PRK07482 hypothetical protein; Provisional

Probab=99.81  E-value=9.3e-17  Score=151.64  Aligned_cols=352  Identities=16%  Similarity=0.079  Sum_probs=207.2

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCC-CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSP-TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI   86 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~   86 (387)
                      +.|+|..-|.-.....+ .+|.+.+++++++.....  +.. .....+.+..+|+.+.+..+  .+-+.+++++++++|+
T Consensus        50 ~~ylD~~sg~~~~~lGh-~~p~v~~Av~~q~~~~~~--~~~~~~~~~~~~~~lAe~L~~~~p--~~~~~v~f~~sGSEAv  124 (461)
T PRK07482         50 RRYIDAFAGLYCVNVGY-GRTEVAEAIAEQAKELAY--YHTYVGHGTEASITLSKRIIDRAP--AGMSKVYYGLSGSDAN  124 (461)
T ss_pred             CEEEEcccchhhhcCCC-CCHHHHHHHHHHHHhcCc--cccccccCCHHHHHHHHHHHHhCC--CCcCEEEEeCchHHHH
Confidence            35566555443233233 478899999999886421  111 01123445556666654332  2346899999999999


Q ss_pred             HHHHHhhc------C-C-CCeEEEcCCCCcchHHHhhccCCCc------------eeeeeccCCCCC---cc--------
Q 038416           87 EISLSVLA------R-P-GANILIPRPGYPLYEIHAAGSNNNL------------EARHYDLLPEKR---WE--------  135 (387)
Q Consensus        87 ~~~~~~l~------~-~-g~~vl~~~p~~~~~~~~~~~~~~g~------------~~~~~~~~~~~~---~~--------  135 (387)
                      +.+++...      . + ..+|+....+|++....+. +..+.            .+..++.+...+   +.        
T Consensus       125 e~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~-s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  203 (461)
T PRK07482        125 ETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTG-SLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSA  203 (461)
T ss_pred             HHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhh-hccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHH
Confidence            99999863      1 2 2578989999998643322 01110            111122111000   00        


Q ss_pred             CChhhHHHhhc---cCceEEEEeCC-CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCc
Q 038416          136 VDLDGVEALAD---ENTVAIVIINP-GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIV  210 (387)
Q Consensus       136 ~~~~~l~~~~~---~~~~~v~l~~p-~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~  210 (387)
                      .+++++++.+.   ++..+.++..| +...|.. +|++.+++|.++|++||+++|+||++.+|...|..+.. ..++...
T Consensus       204 ~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~-~~~gv~P  282 (461)
T PRK07482        204 YCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGS-DHYGIEP  282 (461)
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhH-HhcCCCC
Confidence            03566777663   23345566666 5566776 56778999999999999999999999998766653332 2222222


Q ss_pred             cEEEEecCcccccccc-cceEEEEeeCCCCcccchhHHHHHHhh--------hhccCCcchHHHHHHHHHhhhccHHHH-
Q 038416          211 PVITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGFVDSIKGC--------LNAASHPVTFIQAAVPRIVDETNEAFF-  280 (387)
Q Consensus       211 ~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~-  280 (387)
                      .++   +++|.+ .+| .++|.+++++        ++.+.+...        ...+++.++++.+++.+.|+...++.+ 
T Consensus       283 Div---~~gKgl-~gG~~Pi~av~~~~--------~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~~l~  350 (461)
T PRK07482        283 DLI---TVAKGL-TSAYAPLSGSIVGE--------KVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILERENLV  350 (461)
T ss_pred             CEE---EEcccc-ccCccccceeeecH--------HHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHH
Confidence            233   467995 456 4899998875        566655421        124567899999998888876444332 


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccc--cCCCc----HHHHHHHHHHhcCeEEEcCCccCC
Q 038416          281 AKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML--EDIGD----DLEFCLKLAKEESVIILPGRTVGM  354 (387)
Q Consensus       281 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~----~~~~~~~ll~~~gi~v~~g~~~~~  354 (387)
                      ++..+.-...++.+.+.++++|.+..  ...-|.++.+.+.....  .....    ...+... +.++|+.+.++.   .
T Consensus       351 ~~~~~~g~~l~~~L~~l~~~~~~v~~--vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~-~~~~Gvl~~~~~---~  424 (461)
T PRK07482        351 GNAAEVGAYFRARLRAAFGDHPLVGE--VRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAA-ALERGVIARAMP---H  424 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCEEE--EeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHH-HHHCCcEEecCC---C
Confidence            22223333333444333344543321  23456676676643110  00000    1234444 456799886531   1


Q ss_pred             CCeEEEEe--eCChHhHHHHHHHHHHHHHHhh
Q 038416          355 KNWLRIAF--AAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       355 ~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      .+.+|+.+  .+++++++++++.+.++++++.
T Consensus       425 ~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~~  456 (461)
T PRK07482        425 GDILGFAPPLVLTRAEADEIVAIAKDAVDEVL  456 (461)
T ss_pred             CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            36789886  5689999999999999998753

>PRK07046 aminotransferase; Validated

Probab=99.81  E-value=5.6e-17  Score=152.44  Aligned_cols=342  Identities=14%  Similarity=0.071  Sum_probs=200.6

Q ss_pred             ccccCCCCCCCCCCCCCC-CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLS-DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI   86 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~   86 (387)
                      ..|++.+-|.-..  .++ .+|.+.+++++++.......++     .+.+..+++.+.+..    ..+.+.+++++++|+
T Consensus        75 ~~yiD~~~g~g~~--~lGh~~p~i~~Av~~q~~~~~~~~~~-----~~~~~~lAe~l~~~~----~~~~v~F~nSGtEA~  143 (453)
T PRK07046         75 HRYDDFCLGDTGA--MFGHSPAPVARALAEQARRGLTTMLP-----SEDAAWVGEELARRF----GLPYWQVATTATDAN  143 (453)
T ss_pred             CEEEEeccccccc--ccCCCCHHHHHHHHHHHHhCCCCCCC-----CHHHHHHHHHHHHHh----CCCEEEEECCHHHHH
Confidence            3456654443211  133 5689999999999865332222     244455555554432    257899999999999


Q ss_pred             HHHHHhhc--CCCCeEEEcCCCCcchHHHhhccCCCceee------eec--cC---CCCCccCChhhHHHhhccCceEEE
Q 038416           87 EISLSVLA--RPGANILIPRPGYPLYEIHAAGSNNNLEAR------HYD--LL---PEKRWEVDLDGVEALADENTVAIV  153 (387)
Q Consensus        87 ~~~~~~l~--~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~------~~~--~~---~~~~~~~~~~~l~~~~~~~~~~v~  153 (387)
                      +.+++...  ...++|+....+|+++......+..+....      .++  +.   ..-.| -|++++++.+..+..+.+
T Consensus       144 e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-nd~~~l~~~l~~~~vAav  222 (453)
T PRK07046        144 RFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEF-NDLAALEAALADGDVAAV  222 (453)
T ss_pred             HHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCC-CCHHHHHHHhCCCCeEEE
Confidence            99998864  233789999999998743222001000000      000  00   00001 168888888865445566


Q ss_pred             EeCC-CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEE
Q 038416          154 IINP-GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGW  231 (387)
Q Consensus       154 l~~p-~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~  231 (387)
                      +..| +...|.. .+++.++++.++|++||+++|+||++. |..+-........+.+|     +.+++|.+ .+|+++|.
T Consensus       223 i~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-fr~g~Gg~~~~~gv~PD-----i~t~gK~l-ggG~Pi~a  295 (453)
T PRK07046        223 LAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-ISSGPGGYTRAHGLEPD-----FLVVGKPI-AGGVPCAV  295 (453)
T ss_pred             EECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-CccCCcchhHHhCCCcc-----ceeehhhh-cCCCccee
Confidence            6777 4445554 566779999999999999999999997 43211111111122222     33688996 46799999


Q ss_pred             EEeeCCCCcccchhHHHHHHhh----------hhccCCcchHHHHHHHHHhhhccH-HHHHHHHHHHHHHHHHHHHHhhc
Q 038416          232 LVTSDPNGILQNSGFVDSIKGC----------LNAASHPVTFIQAAVPRIVDETNE-AFFAKIIGLLKETADICYERIKE  300 (387)
Q Consensus       232 i~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~  300 (387)
                      +++++        ++.+.+...          ...+++.++++.+++.+.|+...+ +.+++..+.-...++.+.+.+.+
T Consensus       296 v~g~~--------~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~  367 (453)
T PRK07046        296 YGFSA--------ELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAAYAHMLALAARLAAGLRAVIAR  367 (453)
T ss_pred             eeehH--------HHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHh
Confidence            99876        677766521          123567788888888888775432 33333334444444444444444


Q ss_pred             CCCCCCCCCCCceEEEEEecCcccccCC------Cc---HHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHH
Q 038416          301 IPCITCPVKPQGAMFVMVKLNVSMLEDI------GD---DLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLED  371 (387)
Q Consensus       301 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~---~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~  371 (387)
                      .+ +. ......|.++.+.+........      .+   ...+...+ .++||.+.|.     .+.+++++.++++++++
T Consensus       368 ~~-~~-~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Gv~~~~~-----~~~~~~~p~~t~~did~  439 (453)
T PRK07046        368 HG-LP-WHVTRVGARVEFQFAPTPPRNGAEAAAALDPELEAALHLYL-LNRGVLITPF-----HNMMLVCPATTAADVDR  439 (453)
T ss_pred             CC-CC-eEEEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHH-HHCCCEEecc-----cCcEEEeCCCCHHHHHH
Confidence            42 22 1112223333444421110000      01   12233444 4569998873     25678888899999999


Q ss_pred             HHHHHHHHHHHhh
Q 038416          372 GLERIKAFCQRHA  384 (387)
Q Consensus       372 ~~~~l~~~~~~~~  384 (387)
                      +++++.++++++.
T Consensus       440 ~~~~~~~~l~~~~  452 (453)
T PRK07046        440 LVAAFDACLGELL  452 (453)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998754

>PRK05965 hypothetical protein; Provisional

Probab=99.81  E-value=4.8e-17  Score=153.51  Aligned_cols=347  Identities=15%  Similarity=0.121  Sum_probs=203.3

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCC-CCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHY-NCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      .++|..-|.-.....+ .+|.+.+++++++.+... ..+.  ....+.+..+++.+.+..+  .+.+.+++++++++|++
T Consensus        47 ~ylD~~~g~~~~~lGh-~~p~i~~Ai~~q~~~~~~~~~~~--~~~~~~~~~lae~L~~~~p--~~~~~v~f~~sGSEAve  121 (459)
T PRK05965         47 QLLDAFAGLWCVNVGY-GQESIVEAAAEQMRELPYATGYF--HFGSEPAIRLAAKLAERAP--GSLNHVYFTLGGSDAVD  121 (459)
T ss_pred             EEEECcccHHhccCCC-CCHHHHHHHHHHHHhcCCccccc--ccCCHHHHHHHHHHHhhCC--CCcCEEEEeCChhHHHH
Confidence            4555544332222222 478999999999886321 1110  1112334455555544332  23468999999999999


Q ss_pred             HHHHhhcC-------CC-CeEEEcCCCCcchHHHhhccCCCc------------eeeeeccCCC--CCccCC--------
Q 038416           88 ISLSVLAR-------PG-ANILIPRPGYPLYEIHAAGSNNNL------------EARHYDLLPE--KRWEVD--------  137 (387)
Q Consensus        88 ~~~~~l~~-------~g-~~vl~~~p~~~~~~~~~~~~~~g~------------~~~~~~~~~~--~~~~~~--------  137 (387)
                      .+++....       ++ .+|+....+|++...... +..+.            .+..++.+..  ..+.-+        
T Consensus       122 ~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~-s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (459)
T PRK05965        122 SAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGA-GLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAAS  200 (459)
T ss_pred             HHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHH-HhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHH
Confidence            99987531       22 579999999998653222 01111            1122221110  001112        


Q ss_pred             hhhHHHhhcc---CceEEEEeCC-CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccE
Q 038416          138 LDGVEALADE---NTVAIVIINP-GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPV  212 (387)
Q Consensus       138 ~~~l~~~~~~---~~~~v~l~~p-~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~  212 (387)
                      ++.+++.++.   +..+.++..| +...|.. +|++.++++.++|++||+++|.||++.+|...|..+. ...++.... 
T Consensus       201 ~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a-~~~~gv~PD-  278 (459)
T PRK05965        201 VAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFA-CEAEGVVPD-  278 (459)
T ss_pred             HHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhh-HhhcCCCCC-
Confidence            2456666642   3345555555 6666775 5777799999999999999999999999876664322 222222222 


Q ss_pred             EEEecCcccccccc-cceEEEEeeCCCCcccchhHHHHHHhh--------hhccCCcchHHHHHHHHHhhhccHHHHHHH
Q 038416          213 ITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGFVDSIKGC--------LNAASHPVTFIQAAVPRIVDETNEAFFAKI  283 (387)
Q Consensus       213 ~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  283 (387)
                        |-+++|.+ .+| +++|.+++++        ++.+.+...        ...+++.++++.+++.+.|+..+++.+   
T Consensus       279 --iv~~gKgl-~gG~~Pi~av~~~~--------~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~l---  344 (459)
T PRK05965        279 --LMTVAKGL-TSGYVPMGAVLMSD--------HVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGL---  344 (459)
T ss_pred             --eEEechhh-ccCCcceeEEEEcH--------HHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhccH---
Confidence              33567995 556 5999999976        676666421        124667889999888888876443332   


Q ss_pred             HHHHHHHHHHHHHHhhc---CCCCCCCCCCCceEEEEEecCcccc-c-CCC----cHHHHHHHHHHhcCeEEEcCCccCC
Q 038416          284 IGLLKETADICYERIKE---IPCITCPVKPQGAMFVMVKLNVSML-E-DIG----DDLEFCLKLAKEESVIILPGRTVGM  354 (387)
Q Consensus       284 ~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~g~~~~~~~~~~~~-~-~~~----~~~~~~~~ll~~~gi~v~~g~~~~~  354 (387)
                      .++.++.-+++.+.|++   .|.+..  ...-|.++-+.+..... . ...    ....+... +.++|+.+.+..    
T Consensus       345 ~~~~~~~g~~l~~~l~~l~~~~~v~~--vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~-~~~~Gll~~~~g----  417 (459)
T PRK05965        345 LANGQKAGPRFAAGLDALRAHPLVGD--VRGRGLLGALELVADKATKTPFDAALDPADRIFDR-AYANGLVFRAFG----  417 (459)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCEEE--EeecceEEEEEEeccccccCCCCchhHHHHHHHHH-HHhCCeEEEecC----
Confidence            23334444444444444   332221  23446666666632110 0 000    11234443 466799997632    


Q ss_pred             CCeEEEEe--eCChHhHHHHHHHHHHHHHHhh
Q 038416          355 KNWLRIAF--AAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       355 ~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      .+.+|+.+  ..+++++++++++|.++++++.
T Consensus       418 ~~~i~~~PpL~it~~ei~~~~~~l~~~l~~~~  449 (459)
T PRK05965        418 DGVLGFAPALCCTEGEFDLIFERTRKTLDDVL  449 (459)
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHHHHHHHHHh
Confidence            46789987  4689999999999999998753

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.81  E-value=1.1e-16  Score=150.64  Aligned_cols=330  Identities=15%  Similarity=0.070  Sum_probs=197.2

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc-------CC-C
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA-------RP-G   97 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-------~~-g   97 (387)
                      .+|.+.+++++++.+...  ........+.+..+++.+.+..+  ..-+.+++++++++|++.+++...       .+ .
T Consensus        71 ~~p~v~~Ai~~ql~~~~~--~~~~~~~~~~~~~lAe~L~~~~p--~~~~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r  146 (453)
T PRK06943         71 ANPRINAALKDQLDTLEH--AMLAGCTHEPAIELAERLAALTG--GTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDK  146 (453)
T ss_pred             CCHHHHHHHHHHHHhcCC--ccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence            678889999999875311  11101112344455555544322  123589999999999999999862       12 3


Q ss_pred             CeEEEcCCCCcchHHHhhccCCCc------------eeeeeccCCCCC--cc--------CChhhHHHhhcc--CceEEE
Q 038416           98 ANILIPRPGYPLYEIHAAGSNNNL------------EARHYDLLPEKR--WE--------VDLDGVEALADE--NTVAIV  153 (387)
Q Consensus        98 ~~vl~~~p~~~~~~~~~~~~~~g~------------~~~~~~~~~~~~--~~--------~~~~~l~~~~~~--~~~~v~  153 (387)
                      .+|+....+|++....+. +..|.            .+..++.+...+  +.        -+++++++.++.  +..+.+
T Consensus       147 ~~Ii~~~~~yHG~t~gal-s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAv  225 (453)
T PRK06943        147 REFVCLANGYHGETIGAL-GVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAERAGKIAAL  225 (453)
T ss_pred             CEEEEECCCcCCCcHHhh-cccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEE
Confidence            679999999988643222 01211            112222211100  00        124566666642  344445


Q ss_pred             EeCC--CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccc-cce
Q 038416          154 IINP--GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPG-WRL  229 (387)
Q Consensus       154 l~~p--~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g-~r~  229 (387)
                      +..|  +...|.. +|++.++++.++|++||+++|+||++.+|...|..+.. ..++-...++   +++|.++ +| +++
T Consensus       226 iiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~-~~~gv~PDiv---t~gKgl~-gG~~Pi  300 (453)
T PRK06943        226 IVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFAC-EQAGVWPDFL---CLSKGIS-GGYLPL  300 (453)
T ss_pred             EEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHH-HhCCCCCCeE---eeehhhc-cCcccc
Confidence            5555  6667774 67788999999999999999999999998766643321 1222222233   5679964 67 599


Q ss_pred             EEEEeeCCCCcccchhHHHHHHhh-------hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhh---
Q 038416          230 GWLVTSDPNGILQNSGFVDSIKGC-------LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIK---  299 (387)
Q Consensus       230 G~i~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~---  299 (387)
                      |.+++++        ++.+.+...       ...+++.++++.+++.+.|+..+++.+-   ++.++.-+++.+.|+   
T Consensus       301 ~av~~~~--------ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~---~~~~~~G~~l~~~L~~l~  369 (453)
T PRK06943        301 SLVLSRD--------AIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAEDDVL---ARNARKSARLRAALAPLA  369 (453)
T ss_pred             eEEEEcH--------HHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHh
Confidence            9999976        676665421       1245677898988888888765443332   233333333333333   


Q ss_pred             cCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHH
Q 038416          300 EIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIK  377 (387)
Q Consensus       300 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~  377 (387)
                      +.+.+..  ...-|.++-+.+.....+.......+... +.++||.+.+.     .+.+|+++  .++++++++++++|.
T Consensus       370 ~~~~v~~--vrG~Gl~~gvel~~~~~~~~~~~~~i~~~-~~~~Gll~~~~-----g~~l~~~Ppl~it~~eid~~~~~l~  441 (453)
T PRK06943        370 AHPQVRH--LRQRGTIFAFDVALDGDAARTFSRRFFEA-ALERELLLRPI-----GTTVYLMPPYVLDDDEIAWLAERTR  441 (453)
T ss_pred             cCCCEEe--EeccccEEEEEEccCCCcchHHHHHHHHH-HHHCCcEEEec-----CCEEEEeCCCcCCHHHHHHHHHHHH
Confidence            3444431  23446666666642111000012234444 46679998774     24699996  579999999999999


Q ss_pred             HHHHHhh
Q 038416          378 AFCQRHA  384 (387)
Q Consensus       378 ~~~~~~~  384 (387)
                      ++++++.
T Consensus       442 ~al~~~~  448 (453)
T PRK06943        442 ATLDATL  448 (453)
T ss_pred             HHHHHHH
Confidence            9998763

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=99.80  E-value=4.3e-17  Score=147.92  Aligned_cols=331  Identities=16%  Similarity=0.136  Sum_probs=205.4

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCC--cHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc-------CC
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLG--VPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA-------RP   96 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~--~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-------~~   96 (387)
                      ..+++.+|+++++..-..........  ..+|-+.+++..    + +-+=++|++++|+++|++.+++...       ++
T Consensus        61 ~~~~i~~Ai~~Q~~~l~~~~~~~~t~~Pa~~LA~~L~~~a----P-~~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p  135 (449)
T COG0161          61 GRPEIAEAIKKQLDKLPHVMFGGFTHEPAIELAEKLAELA----P-EGGLDHVFFTDSGSEAVETALKMALQYWRARGQP  135 (449)
T ss_pred             CCHHHHHHHHHHHHhCCchhhcccCCchHHHHHHHHHHhC----C-CCCccEEEEeCCchHHHHHHHHHHHHHHHhcCCC
Confidence            56788899999888632211111111  344555555544    1 0225799999999999999999864       23


Q ss_pred             C-CeEEEcCCCCcchHHHhhccCCCc-------------eeeeeccCC-----C-CCcc----CChhhHHHhhcc---Cc
Q 038416           97 G-ANILIPRPGYPLYEIHAAGSNNNL-------------EARHYDLLP-----E-KRWE----VDLDGVEALADE---NT  149 (387)
Q Consensus        97 g-~~vl~~~p~~~~~~~~~~~~~~g~-------------~~~~~~~~~-----~-~~~~----~~~~~l~~~~~~---~~  149 (387)
                      . .+++.-..+|++...... |..|.             ++..++.+.     . ..+.    -..++|++.+..   .+
T Consensus       136 ~r~~~Isr~~gYHG~T~ga~-Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~  214 (449)
T COG0161         136 QRKKFISRRNGYHGDTLGAM-SVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPET  214 (449)
T ss_pred             cceEEEEeccCcCcccchhe-eccCchhhhhhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCccc
Confidence            2 358888889986432222 12221             111222211     0 1111    235567776643   56


Q ss_pred             eEEEEeCC--CCCccccC-CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccc-cccCCCccEEEEecCccccccc
Q 038416          150 VAIVIINP--GNPCGNVF-SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPM-GVFGSIVPVITLGSISKRWIVP  225 (387)
Q Consensus       150 ~~v~l~~p--~nptG~~~-~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~s~sK~~~~~  225 (387)
                      .+.++..|  +.-+|..+ |+.-++++.++|++||+++|.||+-.+|+..|+.+..- ....+|     +-+++|.+..+
T Consensus       215 IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PD-----i~~~aKGLT~G  289 (449)
T COG0161         215 IAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACEHAGIVPD-----ILCLAKGLTGG  289 (449)
T ss_pred             EEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCCCCC-----eeeeccccccc
Confidence            77778888  44478865 55559999999999999999999999999888655431 122333     44678997666


Q ss_pred             ccceEEEEeeCCCCcccchhHHHHHHhh-----h-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhh
Q 038416          226 GWRLGWLVTSDPNGILQNSGFVDSIKGC-----L-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIK  299 (387)
Q Consensus       226 g~r~G~i~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  299 (387)
                      -+++|.+++++        ++.+.+...     . ..+++.+|.+++++.+.|+-.+++.+   .++.++...++.+.|+
T Consensus       290 Y~Pl~a~l~~~--------~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e~e~l---~~~~~~~~~~l~~~L~  358 (449)
T COG0161         290 YLPLSAVLTSD--------RIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILEEEDL---LERVAEIGAYLQAGLQ  358 (449)
T ss_pred             chhhHhHhhhH--------HHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHH
Confidence            78999888876        677777654     1 25678899999988888776543333   2333344444555554


Q ss_pred             c----CCCCCCCCCCCceEEEEEecCcccccC--C-CcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHH
Q 038416          300 E----IPCITCPVKPQGAMFVMVKLNVSMLED--I-GDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLE  370 (387)
Q Consensus       300 ~----~~~~~~~~~~~~g~~~~~~~~~~~~~~--~-~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~  370 (387)
                      +    .|.+..  ...-|.+.-+.+.......  + ......+...+.++|+.++|.     .+.+=+++  .+++++++
T Consensus       359 ~~l~~~p~Vgd--VR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~-----g~~i~~~PPliit~~eid  431 (449)
T COG0161         359 AALADHPLVGD--VRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRPL-----GDVIYLMPPLIITREEID  431 (449)
T ss_pred             HhcccCCcEEE--eeccceEEEEEEecccccccchhhhHHHHHHHHHHHCCeEEeec-----CCEEEEcCCccCCHHHHH
Confidence            4    333331  2344666666664322110  0 012334555566779999996     34555555  56999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 038416          371 DGLERIKAFCQRHAK  385 (387)
Q Consensus       371 ~~~~~l~~~~~~~~~  385 (387)
                      ++++.+++++++...
T Consensus       432 ~l~~~l~~al~~~~~  446 (449)
T COG0161         432 ELVDALREALDETLA  446 (449)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999987653

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.80  E-value=3e-17  Score=148.71  Aligned_cols=332  Identities=18%  Similarity=0.114  Sum_probs=195.1

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCC------CCCcHHHHHHHHHHHhhcCCCCCCCCCEEE-cCChHHHHHHHHHhhcCCC
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSP------TLGVPSARRGIADYLNRDLPYKLSPEDVYL-TLGCSQAIEISLSVLARPG   97 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~------~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~-~~g~~~a~~~~~~~l~~~g   97 (387)
                      .++|.+++++...+.+....+|+.      ..-..++++...+...+.|+...+.+.+-+ ..|++.|+.+++.+|++||
T Consensus        31 ~~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aLl~pG  110 (399)
T PF00464_consen   31 YMSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQANLAVYMALLKPG  110 (399)
T ss_dssp             ---HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHHHHHHHHT-TT
T ss_pred             ccCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHHHHHHHHHHHhhc
Confidence            477888888888887754444432      122345555555555555553322223322 3667889999999999999


Q ss_pred             CeEEEcCCCCcchHHHhh---c-----cCCCceeeeeccCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCccccCCHH
Q 038416           98 ANILIPRPGYPLYEIHAA---G-----SNNNLEARHYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        98 ~~vl~~~p~~~~~~~~~~---~-----~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~  168 (387)
                      |+|+..+..+.+......   .     +....+...++++++ +..+|.+++++.+.. ++++|++.....|     -+-
T Consensus       111 D~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~-~~~ID~d~l~~~a~~~kPklIi~G~S~y~-----~~~  184 (399)
T PF00464_consen  111 DTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPD-TGLIDYDELEKLAKEHKPKLIICGASSYP-----RPI  184 (399)
T ss_dssp             -EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TT-TSSB-HHHHHHHHHHH--SEEEEE-SSTS-----S--
T ss_pred             CcEEecChhhcccccccccccccccccccceEEEEeeeeecC-CCeECHHHHHHHHhhcCCCEEEECchhcc-----Ccc
Confidence            999987766654322111   0     012346677777654 458999999997765 6777766544432     234


Q ss_pred             HHHHHHHHHHhcCcEEeeccccc-ccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCC------CCcc
Q 038416          169 HLQKIARTARNLGIIVIADEVYN-HLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDP------NGIL  241 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~------~~~~  241 (387)
                      +++++.++|.+.|.++++|.+|. ++.-+|.-+.|+..  .+   ++.+|.+|.  ++|.|.|.|++++.      ..-.
T Consensus       185 d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~--AD---vvt~sThKt--l~GPrggiI~~~~~~~~~~~~~~~  257 (399)
T PF00464_consen  185 DFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPY--AD---VVTGSTHKT--LRGPRGGIILTNKGSKNVDKKGKE  257 (399)
T ss_dssp             -HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCT--SS---EEEEESSGG--G-SSS-EEEEES-SEEEE-TTS-E
T ss_pred             CHHHHHHHHHhcCcEEEecccccccceehheecCcccc--ce---EEEeecccc--ccccCceEEEEcCCccccCCcccc
Confidence            58999999999999999999998 45555555566643  33   889999998  78999999999710      0000


Q ss_pred             cchhHHHHHHhhhh--ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEe
Q 038416          242 QNSGFVDSIKGCLN--AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVK  319 (387)
Q Consensus       242 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~  319 (387)
                      .++++.+++.+...  .-+++.....++++.++.......+++..+++.+|++.+.+.|.+. |+.++........++++
T Consensus       258 ~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~-G~~v~~ggTd~H~vlvd  336 (399)
T PF00464_consen  258 IDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQER-GFKVVTGGTDNHQVLVD  336 (399)
T ss_dssp             EEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-T-EEGGGS-SSSEEEEE
T ss_pred             cHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhC-CcEEEECCCCCCeEEEE
Confidence            02467777766532  1223444444555555554334456888899999999999999998 78866555567788888


Q ss_pred             cCcccccCCCcHHHHHHHHHHhcCeEEEc----CCcc-CCCCeEEEEe------eCChHhHHHHHHH
Q 038416          320 LNVSMLEDIGDDLEFCLKLAKEESVIILP----GRTV-GMKNWLRIAF------AAEPATLEDGLER  375 (387)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~ll~~~gi~v~~----g~~~-~~~~~~Ri~~------~~~~e~~~~~~~~  375 (387)
                      +.....    + ...+...|++.||.++.    +..- .....+||+.      +..++++.++.+.
T Consensus       337 ~~~~~~----~-g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlRlGT~~lT~rG~~e~dm~~iA~~  398 (399)
T PF00464_consen  337 LRSFGI----D-GKEAEKALEEAGIIVNKNTIPGDRSPFVPSGLRLGTPALTRRGMKEEDMKEIAEL  398 (399)
T ss_dssp             GGGGTS------HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEEEEESHHHHHTT--HHHHHHHHHH
T ss_pred             eccccc----c-hHHHHHHHHhcCeeecccccCCCCCCCCCCEEEECCHHHHhCCCCHHHHHHHHhh
Confidence            764322    3 34556677999999874    3311 1146799999      2356777766554

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PRK06105 aminotransferase; Provisional

Probab=99.80  E-value=1.7e-16  Score=149.75  Aligned_cols=348  Identities=17%  Similarity=0.113  Sum_probs=203.9

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCC-CCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHY-NCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI   86 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~   86 (387)
                      ..++|..-|.......+ .+|.+.+|+++++.+... ...+  ....+.+.++++.+.+..+  .+-+.+++++++++|+
T Consensus        48 ~~ylD~~~g~~~~~lGh-~~p~i~~Ai~~q~~~~~~~~~~~--~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGseAv  122 (460)
T PRK06105         48 KRYIEGMAGLWSVALGF-SEQRLVEAAARQMKKLPFYHTFS--HKSHGPVIDLAEKLVAMAP--VPMSKVFFTNSGSEAN  122 (460)
T ss_pred             CEEEEcchhHHhccCCC-CCHHHHHHHHHHHHhCCCeeccc--ccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCcHHHH
Confidence            34555544432222222 478899999999876321 1111  1123444455555544332  2346899999999999


Q ss_pred             HHHHHhhc------C-CC-CeEEEcCCCCcchHHHhhccCCCce------------eeeeccCCCCCcc-----------
Q 038416           87 EISLSVLA------R-PG-ANILIPRPGYPLYEIHAAGSNNNLE------------ARHYDLLPEKRWE-----------  135 (387)
Q Consensus        87 ~~~~~~l~------~-~g-~~vl~~~p~~~~~~~~~~~~~~g~~------------~~~~~~~~~~~~~-----------  135 (387)
                      +.+++...      . +| .+|+....+|++...... +..+.+            +..++.+....+.           
T Consensus       123 e~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~-s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  201 (460)
T PRK06105        123 DTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASA-SLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFAT  201 (460)
T ss_pred             HHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhhe-eccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHHHH
Confidence            99999842      1 23 578888889987653332 011111            1112211100000           


Q ss_pred             CChhhHHHhhc---cCceEEEEeCC-CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCc
Q 038416          136 VDLDGVEALAD---ENTVAIVIINP-GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIV  210 (387)
Q Consensus       136 ~~~~~l~~~~~---~~~~~v~l~~p-~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~  210 (387)
                      ...+++++.+.   ++..+.++..| +...|.. +|++.++++.++|++||+++|+||++.+|...|..+. ...++...
T Consensus       202 ~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~-~~~~~v~P  280 (460)
T PRK06105        202 RLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFG-CETFGIKP  280 (460)
T ss_pred             HHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhh-HHhcCCCC
Confidence            01345666653   23445566666 6666775 5788899999999999999999999998866665332 22222221


Q ss_pred             cEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhh--------hhccCCcchHHHHHHHHHhhhccHHHHHH
Q 038416          211 PVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGC--------LNAASHPVTFIQAAVPRIVDETNEAFFAK  282 (387)
Q Consensus       211 ~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  282 (387)
                      .   |.+++|.++...+++|.+++++        ++.+.+...        ...+++.++.+.+++.+.|+...++.   
T Consensus       281 D---i~~~gK~lggG~~P~~av~~~~--------~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~---  346 (460)
T PRK06105        281 D---ILVMSKQLSSSYQPLSAVLMNE--------KVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEERD---  346 (460)
T ss_pred             C---eeeeecccccCcccceEEEEcH--------HHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhcc---
Confidence            2   4478899654336899999976        676666431        12456788888888888777644332   


Q ss_pred             HHHHHHHHHHHHHHHhhc---CCCCCCCCCCCceEEEEEecCcccc--cCCC---c-HHHHHHHHHHhcCeEEEcCCccC
Q 038416          283 IIGLLKETADICYERIKE---IPCITCPVKPQGAMFVMVKLNVSML--EDIG---D-DLEFCLKLAKEESVIILPGRTVG  353 (387)
Q Consensus       283 ~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~---~-~~~~~~~ll~~~gi~v~~g~~~~  353 (387)
                      ..++.++..+++.+.|++   +|.+..+  ..-|.++-+.+.....  ....   . ...+.. .+.++|+.+.+.    
T Consensus       347 l~~~v~~~g~~l~~~L~~l~~~~~v~~v--rG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~-~~~~~Gvl~~~~----  419 (460)
T PRK06105        347 LVGNAAERGARLQARLRALADHPLVGEV--RGVGLIAAVELVADKATKTPFEPPGKVGARANA-AAHEHGVISRAM----  419 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCeEEE--EecceEEEEEEecCcccCCCCCchhHHHHHHHH-HHHHCCeEEEec----
Confidence            334444444444444443   4322211  2346666666532110  0000   0 123444 446779999874    


Q ss_pred             CCCeEEEEee--CChHhHHHHHHHHHHHHHHhh
Q 038416          354 MKNWLRIAFA--AEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       354 ~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~  384 (387)
                       .+.+|+++.  +++++++++++++.++++++.
T Consensus       420 -g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~  451 (460)
T PRK06105        420 -GDTLAFCPPLIITAAQVDEMVDRFGRALDDVA  451 (460)
T ss_pred             -CCEEEEECCCccCHHHHHHHHHHHHHHHHHHH
Confidence             368999984  589999999999999998764

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.80  E-value=1.6e-16  Score=149.31  Aligned_cols=331  Identities=15%  Similarity=0.112  Sum_probs=196.6

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC-------C-C
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR-------P-G   97 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-------~-g   97 (387)
                      .+|.+.+++++++.+-.  +++......+.+..+++.+.+..+  ...+.+++++++++|++.+++....       + .
T Consensus        66 ~~p~v~~ai~~ql~~l~--~~~~~~~~~~~~~~la~~L~~~~p--~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r  141 (445)
T PRK09221         66 GRPEIVEAVARQAATLD--YAPAFQMGHPLAFELAERLAELAP--GGLDHVFFTNSGSESVDTALKIALAYHRARGQGTR  141 (445)
T ss_pred             CCHHHHHHHHHHHHhcc--CccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCC
Confidence            67888899999987521  111111112334445555544332  2246899999999999999987531       1 2


Q ss_pred             CeEEEcCCCCcchHHHhhccCCCc------------eeeeeccCC---CCCccC--------ChhhHHHhhcc---CceE
Q 038416           98 ANILIPRPGYPLYEIHAAGSNNNL------------EARHYDLLP---EKRWEV--------DLDGVEALADE---NTVA  151 (387)
Q Consensus        98 ~~vl~~~p~~~~~~~~~~~~~~g~------------~~~~~~~~~---~~~~~~--------~~~~l~~~~~~---~~~~  151 (387)
                      .+|+....+|++....+. +..|.            .+..++.+.   ...+..        ..+.+++.++.   +..+
T Consensus       142 ~~ii~~~~~yHG~t~gal-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iA  220 (445)
T PRK09221        142 TRLIGRERGYHGVGFGGI-SVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALHDASTIA  220 (445)
T ss_pred             cEEEEECCCcCccchhhh-ccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhcCCCcEE
Confidence            579999999987643322 01111            112222210   000000        13466666642   3344


Q ss_pred             EEEeCC-CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCCccEEEEecCcccccccccc
Q 038416          152 IVIINP-GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVITLGSISKRWIVPGWR  228 (387)
Q Consensus       152 v~l~~p-~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~s~sK~~~~~g~r  228 (387)
                      .++..| +...|.. .|.+.++++.++|++||+++|+||++.+|+..|..+.. .....+|     +.+++|.++...++
T Consensus       221 avi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~PD-----i~~~gK~l~gG~~P  295 (445)
T PRK09221        221 AVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGVTPD-----IITFAKGLTNGAIP  295 (445)
T ss_pred             EEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCCCCC-----EEEeccccccCccc
Confidence            455555 6667885 56677999999999999999999999987655543221 1122222     34788996444378


Q ss_pred             eEEEEeeCCCCcccchhHHHHHHhh--------hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc
Q 038416          229 LGWLVTSDPNGILQNSGFVDSIKGC--------LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE  300 (387)
Q Consensus       229 ~G~i~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  300 (387)
                      +|.+++++        ++.+.+...        ...+++.++++..++.+.|+...++   ...++.+++.+++++.|++
T Consensus       296 i~av~~~~--------~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~---~l~~~~~~~g~~l~~~l~~  364 (445)
T PRK09221        296 MGAVIASD--------EIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREE---DLFERAAELAPYFEDAVHS  364 (445)
T ss_pred             ceeeEEcH--------HHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHh
Confidence            99998875        666655321        1235667888888877777654333   2345666666677776665


Q ss_pred             CCCCCCCC-CCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHH
Q 038416          301 IPCITCPV-KPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIK  377 (387)
Q Consensus       301 ~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~  377 (387)
                      +.....+. ...-|.+..+.+............++...+ .++||.+.++     .+.+|+++  ..+++++++++++|+
T Consensus       365 l~~~~~v~~vrg~Gl~~~v~~~~~~~~~~~~~~~~~~~~-~~~Gv~~~~~-----~~~lr~~Ppl~~t~~eid~~~~~l~  438 (445)
T PRK09221        365 LKGLPHVIDIRNIGLVAGIELAPRPGAPGARGYEAFMKC-FEKGLLVRYT-----GDTIALSPPLIIEKAQIDELVDALG  438 (445)
T ss_pred             hccCCCEEEEecCceEEEEEEecccccccchHHHHHHHH-HHCCeEEeec-----CCEEEEECCccCCHHHHHHHHHHHH
Confidence            42211111 122355555555321110001123455554 5679998764     36799997  468999999999999


Q ss_pred             HHHHHh
Q 038416          378 AFCQRH  383 (387)
Q Consensus       378 ~~~~~~  383 (387)
                      ++++++
T Consensus       439 ~~l~~~  444 (445)
T PRK09221        439 DALRAV  444 (445)
T ss_pred             HHHHhh
Confidence            999764

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.80  E-value=9.4e-17  Score=149.86  Aligned_cols=322  Identities=15%  Similarity=0.130  Sum_probs=196.9

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC------C-CC
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR------P-GA   98 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~------~-g~   98 (387)
                      .+|.+.+++++++.+.......  ....+.+..+++.+.+..+  .+.+.+++++++++|++.+++....      . ..
T Consensus        60 ~~p~i~~Ai~~q~~~~~~~~~~--~~~~~~~~~la~~L~~~~p--~~~~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~  135 (428)
T PRK07986         60 NHPQLNAAMKSQIDAMSHVMFG--GITHPPAIELCRKLVAMTP--QPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQ  135 (428)
T ss_pred             CCHHHHHHHHHHHhhcCCcccc--ccCCHHHHHHHHHHHhhCC--CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCc
Confidence            4688999999998763211111  1123445556665554332  2346899999999999999987542      2 36


Q ss_pred             eEEEcCCCCcchHHHhhccCCCc-------------eeeeeccCCCC-C--c-cCChhhHHHhhcc--CceEEEEeCC--
Q 038416           99 NILIPRPGYPLYEIHAAGSNNNL-------------EARHYDLLPEK-R--W-EVDLDGVEALADE--NTVAIVIINP--  157 (387)
Q Consensus        99 ~vl~~~p~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~-~--~-~~~~~~l~~~~~~--~~~~v~l~~p--  157 (387)
                      +|+....+|++....+. +..+.             .+..++..... +  + .-|++++++.++.  ...+.++..|  
T Consensus       136 kii~~~~~yHG~t~~a~-s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~iaavi~Epi~  214 (428)
T PRK07986        136 RFLTLRHGYHGDTFGAM-SVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHRHEIAAVILEPIV  214 (428)
T ss_pred             EEEEECCCcCCCcHhhh-cccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhCCCcEEEEEEechh
Confidence            89999999987543322 01121             01112211000 0  0 1145667776642  2344555555  


Q ss_pred             CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCCccEEEEecCcccccccc-cceEEEEe
Q 038416          158 GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVITLGSISKRWIVPG-WRLGWLVT  234 (387)
Q Consensus       158 ~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~s~sK~~~~~g-~r~G~i~~  234 (387)
                      +...|.. ++++.+++|.++|++||+++|+||++.++...|..+.. .....+|   ++  +++|.++ .| +++|.+++
T Consensus       215 ~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv~PD---i~--t~gK~l~-gG~~p~~av~~  288 (428)
T PRK07986        215 QGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIAPD---IL--CLGKALT-GGTMTLSATLT  288 (428)
T ss_pred             cCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCCCCC---EE--Eechhhh-CCcccCcchhc
Confidence            5556664 56688999999999999999999999887655543221 1122222   33  5899974 66 58999888


Q ss_pred             eCCCCcccchhHHHHHHhh------hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcC---CCCC
Q 038416          235 SDPNGILQNSGFVDSIKGC------LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEI---PCIT  305 (387)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~  305 (387)
                      ++        ++.+.+...      ...+++.++++.+++.+.|+...+.   ...++++++.+++++.|+++   +.+.
T Consensus       289 ~~--------~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~---~~~~~~~~~g~~l~~~l~~l~~~~~i~  357 (428)
T PRK07986        289 TR--------EVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESG---DWQQQVAAIEAQLREELAPLRDAPMVA  357 (428)
T ss_pred             hH--------HHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence            76        677776542      1245667888888888877754332   23444555555555555543   3222


Q ss_pred             CCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHHHH
Q 038416          306 CPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       306 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~  382 (387)
                      .  ...-|.+..+.+..+     .....+...+ .++|+.+.+.     .+.+|+.+  .++++++++++++|.+++++
T Consensus       358 ~--vRg~Gl~~~ve~~~~-----~~~~~~~~~l-~~~Gl~~~~~-----g~~i~~~Ppl~it~~ei~~~~~~l~~~l~~  423 (428)
T PRK07986        358 D--VRVLGAIGVVETTRP-----VNMAALQRFF-VEQGVWIRPF-----GKLIYLMPPYIILPEQLQRLTAAVNRAVQD  423 (428)
T ss_pred             e--EeccceEEEEEeCCc-----ccHHHHHHHH-HHCCcEEEec-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            1  123355665555431     1233454544 6679999874     26899987  47999999999999998864

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.80  E-value=1.9e-16  Score=149.26  Aligned_cols=345  Identities=12%  Similarity=0.057  Sum_probs=201.7

Q ss_pred             cccCCCCCCCCCCCCCC-CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLS-DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      .+++.+ |.-  ...++ .+|.+.+++++++..-..  .+. .-..+.+..+++.+.+..+  ...+.+++++++++|++
T Consensus        73 ~ylD~~-g~~--~~~lGh~~p~v~~Ai~~ql~~~~~--~~~-~~~~~~~~~lae~L~~~~p--~~~~~v~f~~sGseAve  144 (459)
T PRK06082         73 KYMDFH-GNN--VHQLGYGHPHVIEKVKEQMAKLPF--SPR-RFTNETAIECAEKLTEIAG--GELNRVLFAPGGTSAIG  144 (459)
T ss_pred             EEEEcc-cHh--hcccCCCCHHHHHHHHHHHHhCCC--ccC-ccCCHHHHHHHHHHHHhCC--CCCCEEEECCCcHHHHH
Confidence            455554 331  22344 788999999999875321  111 1123445555555554332  22368999999999999


Q ss_pred             HHHHhhc--CCCCeEEEcCCCCcchHHHhhccCCCc------------eeeeeccCCCCC--cc-C------ChhhHHHh
Q 038416           88 ISLSVLA--RPGANILIPRPGYPLYEIHAAGSNNNL------------EARHYDLLPEKR--WE-V------DLDGVEAL  144 (387)
Q Consensus        88 ~~~~~l~--~~g~~vl~~~p~~~~~~~~~~~~~~g~------------~~~~~~~~~~~~--~~-~------~~~~l~~~  144 (387)
                      .+++...  ....+|+....+|++....+. +..+.            .+..++......  +. .      .++.+++.
T Consensus       145 ~AlklAr~~tgr~~ii~~~~~yHG~t~~a~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  223 (459)
T PRK06082        145 MALKLARHITGNFKVVSLWDSFHGASLDAI-SVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYV  223 (459)
T ss_pred             HHHHHHHHhcCCCEEEEEeCCCcCccHHHH-hhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHH
Confidence            9998754  223688888888887543222 01221            112222110000  00 0      12456666


Q ss_pred             hcc-CceEEEEeCC-CCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCCccEEEEecCccc
Q 038416          145 ADE-NTVAIVIINP-GNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVITLGSISKR  221 (387)
Q Consensus       145 ~~~-~~~~v~l~~p-~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~s~sK~  221 (387)
                      ++. ...+.++..| ++..+..+|++.++++.++|++||+++|+||++.++...|..+.. .....+|  ++   +++|.
T Consensus       224 i~~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~PD--iv---~~gKg  298 (459)
T PRK06082        224 IEKEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPD--IL---CIGKG  298 (459)
T ss_pred             HhcCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCCCCC--EE---Eeccc
Confidence            642 2345556666 554455678888999999999999999999999987666543221 1122222  23   48899


Q ss_pred             ccccccceEEEEeeCCCCcccchhHHHHHHhh-hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc
Q 038416          222 WIVPGWRLGWLVTSDPNGILQNSGFVDSIKGC-LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE  300 (387)
Q Consensus       222 ~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  300 (387)
                      ++...+++|.+++++        ++....... ...+++.++++.+++.+.|+...++   ...++.+++-+++.+.|++
T Consensus       299 l~gG~~P~~av~~~~--------~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~  367 (459)
T PRK06082        299 LGGGLVPIAAMITKD--------KYNTAAQISLGHYTHEKSPLGCAAALATIEVIEQE---GLLEKVKADSQFMRERLLE  367 (459)
T ss_pred             ccCCCCcceEEEEcH--------HHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHH
Confidence            654336999999875        443322111 1246678888888888877754332   2334444444444444443


Q ss_pred             ----CCCCCCCCCCCceEEEEEecCccc---ccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHH
Q 038416          301 ----IPCITCPVKPQGAMFVMVKLNVSM---LEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLED  371 (387)
Q Consensus       301 ----~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~  371 (387)
                          +|.+..  ...-|.++.+.+....   .+.......+... +.++|+.+.+..    .+.+|+++  .++++++++
T Consensus       368 l~~~~~~i~~--vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~-~~~~Gvl~~~~~----~~~i~~~Ppl~it~~eid~  440 (459)
T PRK06082        368 MKAKYPLIGD--VRGIGLLWGVELVTDRHTKERAYDEAEAVLYR-CLNNGLSFKVSQ----GNVIQLSPPLIITREELTQ  440 (459)
T ss_pred             HHhhCCCeee--eeeccceeEEEEccCccccCccHHHHHHHHHH-HHhCCCEEEecC----CCEEEEeCCCccCHHHHHH
Confidence                432221  2344666666664211   0000012234444 456799987732    47899998  468999999


Q ss_pred             HHHHHHHHHHHhhh
Q 038416          372 GLERIKAFCQRHAK  385 (387)
Q Consensus       372 ~~~~l~~~~~~~~~  385 (387)
                      +++++.++++++.+
T Consensus       441 ~~~~l~~~l~~~~~  454 (459)
T PRK06082        441 ALAILEEAIAKICQ  454 (459)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988754

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.80  E-value=1.5e-16  Score=148.74  Aligned_cols=326  Identities=13%  Similarity=0.095  Sum_probs=198.2

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC-------CC-
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR-------PG-   97 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-------~g-   97 (387)
                      .+|.+.+++++++.+...  .....-..+.+..+++.+....  +..-+.+++++++++|++.+++....       +| 
T Consensus        61 ~~p~v~~ai~~q~~~~~~--~~~~~~~~~~~~~lae~L~~~~--p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r  136 (429)
T PRK06173         61 NHPRLNAAATNQLAKMSH--IMFGGFTHEPAVELAQKLLEIL--PPSLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQR  136 (429)
T ss_pred             CCHHHHHHHHHHHHhcCC--ccccccCCHHHHHHHHHHHhhC--CCCcCEEEEeCCchHHHHHHHHHHHHHHHHhCCCCC
Confidence            468899999998876321  1110111233444555554322  22346899999999999999987541       23 


Q ss_pred             CeEEEcCCCCcchHHHhhccCCCc-------------eeeeeccCCCCCc-----cCChhhHHHhhcc--CceEEEEeCC
Q 038416           98 ANILIPRPGYPLYEIHAAGSNNNL-------------EARHYDLLPEKRW-----EVDLDGVEALADE--NTVAIVIINP  157 (387)
Q Consensus        98 ~~vl~~~p~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~-----~~~~~~l~~~~~~--~~~~v~l~~p  157 (387)
                      .+|+....+|++....+. +..+.             .+..+|.+.. .+     ..+++.+++.+..  +..+.++..|
T Consensus       137 ~~ii~~~~~yHG~t~~a~-s~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~l~~l~~~i~~~~~~iAAvi~EP  214 (429)
T PRK06173        137 TKFATIRSGYHGDTWHAM-SVCDPVTGMHGLFNHSLPVQYFLPQPSI-KFGEEWNDEAIEPLQDLLEQKGDEIAALILEP  214 (429)
T ss_pred             cEEEEECCCcCCcchhhh-ccCCCchhhhhcccccCCCCeEeCCCCc-ccchhHHHHHHHHHHHHHHhCCCcEEEEEEcc
Confidence            578899999988432222 01110             0111221100 00     0135566776642  3445566666


Q ss_pred             --CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCCccEEEEecCcccccccc-cceEEE
Q 038416          158 --GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVITLGSISKRWIVPG-WRLGWL  232 (387)
Q Consensus       158 --~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~s~sK~~~~~g-~r~G~i  232 (387)
                        +...|.. +|++.++++.++|++||+++|+||++.++...|..+.. .....+|   ++  +++|.++ +| ++++.+
T Consensus       215 i~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PD---iv--~~gK~l~-gG~~p~~a~  288 (429)
T PRK06173        215 VVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVVPD---IM--CIGKALT-GGYLTLSAT  288 (429)
T ss_pred             hhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchHHHhcCCCCC---EE--Eeehhhh-CCccccceE
Confidence              6777776 67788999999999999999999999887655543221 1122222   33  4899974 66 588888


Q ss_pred             EeeCCCCcccchhHHHHHHhh------hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 038416          233 VTSDPNGILQNSGFVDSIKGC------LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITC  306 (387)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  306 (387)
                      +.++        ++.+.+...      ...++..++++.+++.+.|+...++   ...++++++.+.+++.|+++.+...
T Consensus       289 ~~~~--------~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~~~~~~~  357 (429)
T PRK06173        289 ITTE--------AIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLES---PWQQNIQRIEAQLKQELAPAAEFDS  357 (429)
T ss_pred             EecH--------HHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            8875        666666421      1124557788888888877653332   2345555555666666654322221


Q ss_pred             CC-CCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHh
Q 038416          307 PV-KPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       307 ~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                      +. ....|.++-+.+...     .....+...+ .++||.+.+.     .+.+|+.+.  .+++++++++++|.+++++.
T Consensus       358 v~~vRg~Gl~~~iel~~~-----~~~~~i~~~l-~e~Gi~v~~~-----g~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~  426 (429)
T PRK06173        358 VAEVRVLGAIGVVEMKEP-----VNMATLQPRF-VEHGIWVRPF-----GKLVYIMPPFIISPDELSQLTSGLLRVLKQE  426 (429)
T ss_pred             eeeeeccceEEEEEeCCc-----ccHHHHHHHH-HHCCeEEEec-----CCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence            11 123466666666431     1233455544 6679999774     268999994  68999999999999999876


Q ss_pred             hh
Q 038416          384 AK  385 (387)
Q Consensus       384 ~~  385 (387)
                      .+
T Consensus       427 ~~  428 (429)
T PRK06173        427 YN  428 (429)
T ss_pred             hc
Confidence            54

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.80  E-value=1.3e-16  Score=149.01  Aligned_cols=321  Identities=14%  Similarity=0.109  Sum_probs=192.3

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC-------CC-
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR-------PG-   97 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-------~g-   97 (387)
                      .+|.+.+++++++++.....+..  -..+.+..+++.+.+..+  ..-+.+++++++++|++.+++....       ++ 
T Consensus        57 ~~p~i~~ai~~q~~~~~~~~~~~--~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r  132 (422)
T PRK05630         57 GHPRLKAAAHKQIDTMSHVMFGG--LTHEPAIKLTRKLLNLTD--NGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPER  132 (422)
T ss_pred             CCHHHHHHHHHHHHhCCCcccCC--cCCHHHHHHHHHHHhhCC--CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCC
Confidence            57899999999987632111111  112334444554443222  2246899999999999999987531       23 


Q ss_pred             CeEEEcCCCCcchHHHhhccCCCc-------------eeeeeccCCCCCccC-C----hhhHHHhhccCceEEEEeCC--
Q 038416           98 ANILIPRPGYPLYEIHAAGSNNNL-------------EARHYDLLPEKRWEV-D----LDGVEALADENTVAIVIINP--  157 (387)
Q Consensus        98 ~~vl~~~p~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~-~----~~~l~~~~~~~~~~v~l~~p--  157 (387)
                      .+|+....+|++....+. +..+.             ....+|.+....... +    .+.+++.+..+. +.++..|  
T Consensus       133 ~~ii~~~~~yHG~t~~al-s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i-AAvi~EPi~  210 (422)
T PRK05630        133 TRLLTWRSGYHGDTFAAM-SVCDPEGGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELLIDETV-AAIIIEPIV  210 (422)
T ss_pred             cEEEEECCCcCCccHHHh-ccCCCcccccccccccCCCCeEcCCCcccCCChHHHHHHHHHHHHHHhhce-EEEEEechh
Confidence            579999999987543332 01111             112222221110000 1    234444454344 4445555  


Q ss_pred             CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCCccEEEEecCcccccccc-cceEEEEe
Q 038416          158 GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVITLGSISKRWIVPG-WRLGWLVT  234 (387)
Q Consensus       158 ~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~s~sK~~~~~g-~r~G~i~~  234 (387)
                      +...|.. ++.+.++++.++|++||+++|+||++.++...|..+.. .....+|   +  .+++|.+ ..| .++|++++
T Consensus       211 qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PD---i--~t~gK~l-~gG~~p~~av~~  284 (422)
T PRK05630        211 QGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTPD---I--MCVGKAL-TGGFMSFAATLC  284 (422)
T ss_pred             cCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcCCCCC---e--eeeechh-hcCccccceeec
Confidence            6667775 56677999999999999999999999987655543221 1122222   2  2778985 345 58999998


Q ss_pred             eCCCCcccchhHHHHHHhh-------hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc---CCCC
Q 038416          235 SDPNGILQNSGFVDSIKGC-------LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE---IPCI  304 (387)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~  304 (387)
                      ++        ++.+.+...       ...++..++...+++.+.|+...++.+   .++++++.+++++.|+.   .|.+
T Consensus       285 ~~--------~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~---~~~~~~~g~~l~~~L~~l~~~~~v  353 (422)
T PRK05630        285 TD--------KVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMW---RKQVKRIEAELIAGLSPLAHLPGV  353 (422)
T ss_pred             cH--------HHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHHhhcCCCe
Confidence            76        666666421       124567888888888887776443322   33444444555554543   3322


Q ss_pred             CCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHH
Q 038416          305 TCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       305 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~  382 (387)
                      ..  ...-|.++-+.+..+     .+...+... +.++|+.+.+.     .+.+|+.+.  .+++++++++++|.++++.
T Consensus       354 ~~--vRg~Gl~~~ie~~~~-----~~~~~~~~~-~~~~Gl~~~~~-----g~~l~~~PpL~it~~~i~~~~~~l~~al~~  420 (422)
T PRK05630        354 AD--VRVLGAIGVVEMEQP-----VDMEEATQA-AVDHGVWLRPF-----GRLVYVMPPYITTSEQIAQICAALAAAVKA  420 (422)
T ss_pred             ee--eeccccEEEEEECCc-----ccHHHHHHH-HHHCCeEEEec-----CCEEEEECCccCCHHHHHHHHHHHHHHHhc
Confidence            21  123366766666431     123344444 56679998764     268899984  6899999999999998864

>PRK06062 hypothetical protein; Provisional

Probab=99.80  E-value=1.6e-16  Score=149.58  Aligned_cols=330  Identities=15%  Similarity=0.092  Sum_probs=198.3

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc--CCCCeEEEc
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA--RPGANILIP  103 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~g~~vl~~  103 (387)
                      .+|.+.+++++++.....  +.. .-..+.+..+++.+....+  ...+.+++++++++|++.+++...  ....+|+..
T Consensus        70 ~~p~v~~Ai~~q~~~~~~--~~~-~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~  144 (451)
T PRK06062         70 QHPKVVAAIQEQAARLCT--VAP-AHANDARSEAARLIAERAP--GDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSA  144 (451)
T ss_pred             CCHHHHHHHHHHHHhcCC--cCC-ccCCHHHHHHHHHHHHhCC--CCCCEEEEcCChHHHHHHHHHHHHHhhCCceEEEE
Confidence            567899999998876322  111 1123444555555544332  224689999999999999998754  223689989


Q ss_pred             CCCCcchHHHhhccCC-Cc-----------eeeeeccCCCC--Ccc--CC-------hhhHHHhhcc---CceEEEEeCC
Q 038416          104 RPGYPLYEIHAAGSNN-NL-----------EARHYDLLPEK--RWE--VD-------LDGVEALADE---NTVAIVIINP  157 (387)
Q Consensus       104 ~p~~~~~~~~~~~~~~-g~-----------~~~~~~~~~~~--~~~--~~-------~~~l~~~~~~---~~~~v~l~~p  157 (387)
                      ..+|++....+.  .. +.           .+..++.+...  .+.  -+       ++.+++.++.   +..+.++..|
T Consensus       145 ~~~yHG~t~~al--s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAaviiEP  222 (451)
T PRK06062        145 YRSYHGGTGSAI--NLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELEGPSTIAAILLES  222 (451)
T ss_pred             eCCCCCCCHHHH--hhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEcc
Confidence            999988654433  11 10           11111111000  010  01       5667776642   3345556666


Q ss_pred             -CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCc-cccccCCCccEEEEecCcccccccc-cceEEEE
Q 038416          158 -GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYV-PMGVFGSIVPVITLGSISKRWIVPG-WRLGWLV  233 (387)
Q Consensus       158 -~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~s~sK~~~~~g-~r~G~i~  233 (387)
                       +...|.. +|++.++++.++|++||+++|+||++.+|...|..+. ......+|     +.+++|.++ .| +++|.++
T Consensus       223 v~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PD-----i~t~gK~lg-gG~~Pigav~  296 (451)
T PRK06062        223 VPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGVVPD-----LITFAKGVN-SGYVPLGGVA  296 (451)
T ss_pred             ccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCCCCC-----eeeechhhh-cCCcCcEEEE
Confidence             5566776 5677799999999999999999999998765554321 11122232     446889964 46 5899999


Q ss_pred             eeCCCCcccchhHHHHHHhh---hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHH--HHHHHHHHHhhcCCCCCCCC
Q 038416          234 TSDPNGILQNSGFVDSIKGC---LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLK--ETADICYERIKEIPCITCPV  308 (387)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~  308 (387)
                      +++        ++.+.+...   ...+++.++.+.+++.+.|+...++.+.++.+++.  ..++.+.+..++.|.+..+ 
T Consensus       297 ~~~--------~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~G~~~l~~~L~~l~~~~~~v~~v-  367 (451)
T PRK06062        297 ISE--------AIAATFADRPYPGGLTYSGHPLACAAAVATINAMEEEGIVENAARIGAEVLGPGLRELAERHPSVGEV-  367 (451)
T ss_pred             EcH--------HHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeE-
Confidence            976        677766432   12466778888888888887644433333333332  3333443333334432212 


Q ss_pred             CCCceEEEEEecCcccc--cCCC-------cHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHH
Q 038416          309 KPQGAMFVMVKLNVSML--EDIG-------DDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIK  377 (387)
Q Consensus       309 ~~~~g~~~~~~~~~~~~--~~~~-------~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~  377 (387)
                       ..-|.++.+.+.....  ....       ....+... +.++||.+.+.     .+.+|+++  .+++++++++++++.
T Consensus       368 -rG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~Gvl~~~~-----~~~lrl~ppl~~t~~eid~~~~~l~  440 (451)
T PRK06062        368 -RGLGVFWALELVADRETREPLAPYGASSAAMAAVKAA-CKERGLLPFVN-----GNRIHVVPPCTVTEDEVREGLAILD  440 (451)
T ss_pred             -eccccEEEEEEcccccccCCCcccchhhHHHHHHHHH-HHHCCcEEeec-----CCEEEEECCccCCHHHHHHHHHHHH
Confidence             2346666666532110  0000       02234444 46679997653     36799988  568999999999999


Q ss_pred             HHHHHhh
Q 038416          378 AFCQRHA  384 (387)
Q Consensus       378 ~~~~~~~  384 (387)
                      ++++++.
T Consensus       441 ~~l~~~~  447 (451)
T PRK06062        441 AALAVAD  447 (451)
T ss_pred             HHHHHhh
Confidence            9998765

>PLN03032 serine decarboxylase; Provisional

Probab=99.80  E-value=3.8e-16  Score=142.26  Aligned_cols=310  Identities=14%  Similarity=0.064  Sum_probs=202.3

Q ss_pred             HHHHHHHHHhcCCCCC---CCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCE--EEcCChHHHHHHHHHhhc--CCCCeEE
Q 038416           29 VAEDAVVDALRTAHYN---CYSPTLGVPSARRGIADYLNRDLPYKLSPEDV--YLTLGCSQAIEISLSVLA--RPGANIL  101 (387)
Q Consensus        29 ~v~~a~~~~~~~~~~~---~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i--~~~~g~~~a~~~~~~~l~--~~g~~vl  101 (387)
                      ...+++.+...+...+   .+.......++++.+.+++.+.++  .+++++  ++|+|+|+++..++.+..  .++..|+
T Consensus        38 ~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg--~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi  115 (374)
T PLN03032         38 GELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWE--LEKDEYWGYITTCGTEGNLHGILVGREVFPDGILY  115 (374)
T ss_pred             HHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhC--CCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEE
Confidence            4577777766542111   111112346667777777766665  345665  899999999998887754  2456899


Q ss_pred             EcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc---CceEEEEeCCCCCccccCCHHHHHHHHHHHH
Q 038416          102 IPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE---NTVAIVIINPGNPCGNVFSYQHLQKIARTAR  178 (387)
Q Consensus       102 ~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~  178 (387)
                      ++.-.|+++...++  .+|.++..+|++.  ++.+|+++|++++++   .+.+|+++..+|++|.+-|   +++|+++|+
T Consensus       116 ~s~~~H~Sv~kaa~--~lg~~~~~V~~d~--~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idp---i~eI~~i~~  188 (374)
T PLN03032        116 ASRESHYSVFKAAR--MYRMEAVKVPTLP--SGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDD---LDRILRILK  188 (374)
T ss_pred             eCCCceeHHHHHHH--HcCCCCeEeeeCC--CCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCC---HHHHHHHHH
Confidence            99999999999999  8999888888753  447999999999976   3667788888999999955   888888898


Q ss_pred             hcC-----cEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhh
Q 038416          179 NLG-----IIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGC  253 (387)
Q Consensus       179 ~~~-----~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~  253 (387)
                      ++|     +++++|.+++++...-....+...+.. .-..+..|.+|.++ ....+|.++.++        ...+.+...
T Consensus       189 ~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~-~vDSis~s~HK~~g-~P~g~G~ll~r~--------~~~~~~~~~  258 (374)
T PLN03032        189 ELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRK-PIGSVSVSGHKFLG-CPMPCGVALTRK--------KHVKALSQN  258 (374)
T ss_pred             HhCCCCCCeeEEEEccchhhhhhccCCCcccCCCc-CCcEEEECcccccC-CCcCeEEEEEEc--------hhhHhhccC
Confidence            986     589999999864321100001001111 11245668999955 235589999986        233333211


Q ss_pred             h------hccCCcch--HHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccc
Q 038416          254 L------NAASHPVT--FIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML  325 (387)
Q Consensus       254 ~------~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~  325 (387)
                      .      ..+...+.  .....+-..|.....+.+.++.++..++++++.+.|++. ++..+..|... .+.++-+    
T Consensus       259 ~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~-~~~~~~~p~~~-~V~f~~~----  332 (374)
T PLN03032        259 VEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA-GLTCRLNELSS-TVVFERP----  332 (374)
T ss_pred             CcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEECCCce-EEEEcCC----
Confidence            0      11112222  233344444555667888999999999999999999987 67756556543 3332222    


Q ss_pred             cCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHH
Q 038416          326 EDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKA  378 (387)
Q Consensus       326 ~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~  378 (387)
                          ....    + . .|..+.+-     .+++|+++  ..+++.+++.++.|++
T Consensus       333 ----~~~~----~-~-~~w~l~~~-----~~~~hi~vm~~~~~~~id~fi~dl~~  372 (374)
T PLN03032        333 ----MDEA----F-I-KKWQLACE-----GDIAHVVVMPNVTVEKLDEFVEELVE  372 (374)
T ss_pred             ----CcHh----H-h-heeeeccc-----CCEEEEEECCCCCHHHHHHHHHHHhc
Confidence                1111    2 2 25555542     35899999  4577889988888764

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.80  E-value=3.5e-16  Score=136.84  Aligned_cols=329  Identities=17%  Similarity=0.119  Sum_probs=221.1

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCC------CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCC
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSP------TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGA   98 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~------~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~   98 (387)
                      -+++.|.+|+-+.+.+...-+||.      -.-..+++....+..++.|+  .+..+|...+ +++|+.+++.+|++|||
T Consensus        37 ~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFg--a~~anVQPhS-Gs~AN~av~~All~pGD  113 (413)
T COG0112          37 FTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFG--AEYANVQPHS-GSQANQAVYLALLQPGD  113 (413)
T ss_pred             cCCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhC--CCccccCCCC-chHHHHHHHHHHcCCCC
Confidence            378889999999888765545543      22234555666666666565  3445666555 56789999999999999


Q ss_pred             eEEEcCCCCcchHHHh-hccCCC--ceeeeeccCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCccccCCHHHHHHHH
Q 038416           99 NILIPRPGYPLYEIHA-AGSNNN--LEARHYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCGNVFSYQHLQKIA  174 (387)
Q Consensus        99 ~vl~~~p~~~~~~~~~-~~~~~g--~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~~~~l~  174 (387)
                      +|+-.+-.+.+..... ..+..|  .+++.++++++ +..+|.|++++.+.. ++++|+.-....     .-.-+++++.
T Consensus       114 timgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~e-t~~IDyD~~~k~a~e~kPK~ii~G~SaY-----~r~id~~~~r  187 (413)
T COG0112         114 TIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPE-TGLIDYDEVEKLAKEVKPKLIIAGGSAY-----SRPIDFKRFR  187 (413)
T ss_pred             eEecccCCCCCcccCCCCCCccceeEEeEecccccc-cCccCHHHHHHHHHHhCCCEEEECcccc-----ccccCHHHHH
Confidence            9997766666544333 222344  35566676654 457999999997754 566666433222     2223488889


Q ss_pred             HHHHhcCcEEeeccccc-ccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhh
Q 038416          175 RTARNLGIIVIADEVYN-HLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGC  253 (387)
Q Consensus       175 ~~~~~~~~~li~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~  253 (387)
                      ++|.+.|.++++|-+|- ++.-+|..+.|+..  .+   ++.+|.+|+  ++|.|-|.|++++       .++.+++.+.
T Consensus       188 eIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~--Ad---vVTtTTHKT--lrGPrGG~Il~~~-------eel~kkin~a  253 (413)
T COG0112         188 EIADEVGAYLMVDMAHVAGLIAGGVHPNPLPH--AD---VVTTTTHKT--LRGPRGGIILTND-------EELAKKINSA  253 (413)
T ss_pred             HHHHHhCceEEehHHHHHHHHhcccCCCCCCc--cc---eEeCCcccC--CCCCCceEEEecc-------HHHHHHhhhh
Confidence            99999999999999998 55555655555544  22   889999998  7899989998864       2577777654


Q ss_pred             hh--ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcH
Q 038416          254 LN--AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDD  331 (387)
Q Consensus       254 ~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  331 (387)
                      -.  .-+++.....++.+-++.+..+..+++..+++.+|++.+.+.|.+. |+.++........+.+++.....     .
T Consensus       254 VFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~-G~~vvsGgTdnHl~lVDl~~~~~-----~  327 (413)
T COG0112         254 VFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER-GFKVVSGGTDNHLVLVDLRSKGL-----T  327 (413)
T ss_pred             cCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc-CCeEecCCccceEEEEEcccCCC-----C
Confidence            22  1223333444444444554445667888999999999999999987 78866544555566677763211     3


Q ss_pred             HHHHHHHHHhcCeEEEcCCcc-C-----CCCeEEEEe------eCChHhHHHHHHHHHHHHHH
Q 038416          332 LEFCLKLAKEESVIILPGRTV-G-----MKNWLRIAF------AAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       332 ~~~~~~ll~~~gi~v~~g~~~-~-----~~~~~Ri~~------~~~~e~~~~~~~~l~~~~~~  382 (387)
                      ...+..+|.+.||.++-.... .     .+..+||+.      +..++++.+..+.|.+++..
T Consensus       328 Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~  390 (413)
T COG0112         328 GKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDG  390 (413)
T ss_pred             HHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhc
Confidence            456677779999998843322 2     146799998      23567888888888777764

>PRK12403 putative aminotransferase; Provisional

Probab=99.79  E-value=2.6e-16  Score=148.58  Aligned_cols=349  Identities=15%  Similarity=0.094  Sum_probs=197.9

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCC-CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPT-LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~-~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      .++|+.-|.......+ .+|.+.+++++++..-..  ++.. .+..+....+++.+....+  ...+.++++++|++|++
T Consensus        55 ~ylD~~~g~~~~~lGh-~hp~v~~A~~~q~~~~~~--~~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGseA~e  129 (460)
T PRK12403         55 RYLDGMSGLWCTNLGY-GRKDLAAAAARQMEQLPY--YNMFFHTTHPAVIELSELLFSLLP--GHYSHAIYTNSGSEANE  129 (460)
T ss_pred             EEEECchhHHhhcCCC-CCHHHHHHHHHHHHhCCC--eecccccCCHHHHHHHHHHHHhCC--CCcCEEEEeCCcHHHHH
Confidence            4556544433233344 679999999999876321  1111 1223334444444433222  22368999999999999


Q ss_pred             HHHHhhc-------CCCC-eEEEcCCCCcchHHHhhccCCCce-----------eeeeccCCC--CCccC--------Ch
Q 038416           88 ISLSVLA-------RPGA-NILIPRPGYPLYEIHAAGSNNNLE-----------ARHYDLLPE--KRWEV--------DL  138 (387)
Q Consensus        88 ~~~~~l~-------~~g~-~vl~~~p~~~~~~~~~~~~~~g~~-----------~~~~~~~~~--~~~~~--------~~  138 (387)
                      .+++...       ++++ .|+....+|++...... +..+.+           +..+|.+..  .++..        +.
T Consensus       130 ~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~-s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  208 (460)
T PRK12403        130 VLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAAT-ALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAA  208 (460)
T ss_pred             HHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhh-hcCCCccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHH
Confidence            9999874       1223 45566677876533222 022211           112221100  00011        12


Q ss_pred             hhHHHhhc---cCceEEEEeCC-CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCCccE
Q 038416          139 DGVEALAD---ENTVAIVIINP-GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPV  212 (387)
Q Consensus       139 ~~l~~~~~---~~~~~v~l~~p-~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~  212 (387)
                      +.+++.+.   ++..+.++..| +...|.. .|.+.++++.++|++||+++|+||++.+|...|..+.. ...+.+|  +
T Consensus       209 ~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~PD--i  286 (460)
T PRK12403        209 LQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFEPD--T  286 (460)
T ss_pred             HHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCCCC--e
Confidence            44555442   23344555666 5666775 56777999999999999999999999988766653331 1122222  2


Q ss_pred             EEEecCcccccccc-cceEEEEeeCCCCcccchhHHHHHHhh-----hhccCCcchHHHHHHHHHhhhccHHHH-HHHH-
Q 038416          213 ITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGFVDSIKGC-----LNAASHPVTFIQAAVPRIVDETNEAFF-AKII-  284 (387)
Q Consensus       213 ~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~-  284 (387)
                      +   +++|.+ ..| +++|.+++++        ++.+.+...     ...+++.++.+.+++.+.|+..+++.+ .+.. 
T Consensus       287 v---~~gK~l-ggG~~Piga~v~~~--------~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~~~l~~~~~~  354 (460)
T PRK12403        287 L---SIAKGL-TSGYVPMGGLVLSK--------RIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRDEGVVTRVKD  354 (460)
T ss_pred             E---EEcccc-cccccceEEEEECH--------HHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            3   488995 446 4899998865        566666421     123566888899888888876443322 2222 


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccc--cCCCcH---HHHHHHHHHhcCeEEEcCCccCCCCeEE
Q 038416          285 GLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML--EDIGDD---LEFCLKLAKEESVIILPGRTVGMKNWLR  359 (387)
Q Consensus       285 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~---~~~~~~ll~~~gi~v~~g~~~~~~~~~R  359 (387)
                      +.-...++.+.+..+++|.+..  ...-|.++.+.+.....  ......   ...+...+.++|+.+.+.     .+.+|
T Consensus       355 ~~g~~l~~~L~~l~~~~~~i~~--vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~-----~~~~~  427 (460)
T PRK12403        355 DTGPYLQRCLREVFGDHPLVGE--VQGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFEEGVIIRST-----LGRMI  427 (460)
T ss_pred             HHHHHHHHHHHHHHhcCCCEEe--EeecceEEEEEEccCccccccccchhHHHHHHHHHHHhCCEEEEec-----CCEEE
Confidence            2233333444333344542221  23446666666632110  000010   111223345679999763     24588


Q ss_pred             EEeeC--ChHhHHHHHHHHHHHHHHhh
Q 038416          360 IAFAA--EPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       360 i~~~~--~~e~~~~~~~~l~~~~~~~~  384 (387)
                      +++..  ++++++++++.+.++++++.
T Consensus       428 l~Ppl~it~~eid~~~~~l~~al~~~~  454 (460)
T PRK12403        428 MAPALVAGRAEIDELVDKTRIAVDRTA  454 (460)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99854  99999999999999998874

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.79  E-value=2.3e-16  Score=148.74  Aligned_cols=350  Identities=14%  Similarity=0.058  Sum_probs=207.5

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCC---CCCCCEEEcCChHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYK---LSPEDVYLTLGCSQA   85 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~---~~~~~i~~~~g~~~a   85 (387)
                      .+++..-|.-.....+ .+|.+.++++++++.-..  .....-..+.+..+++.+....+..   .+-+.+++++++++|
T Consensus        65 ~ylD~~~g~~~~~lGh-~~p~i~~Ai~~q~~~l~~--~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEA  141 (472)
T PRK08742         65 RYLDAVSSWWTNLFGH-AEPRIGAAIAAQAGELEQ--VMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAG  141 (472)
T ss_pred             EEEEcCccHHhccCCC-CCHHHHHHHHHHHHhCCC--ccccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHH
Confidence            4555544432222222 578899999998864211  1111111244556666655433211   123589999999999


Q ss_pred             HHHHHHhhcC-------C-CCeEEEcCCCCcchHHHhhccCCCc------------eeeeeccCCCC--CccC-------
Q 038416           86 IEISLSVLAR-------P-GANILIPRPGYPLYEIHAAGSNNNL------------EARHYDLLPEK--RWEV-------  136 (387)
Q Consensus        86 ~~~~~~~l~~-------~-g~~vl~~~p~~~~~~~~~~~~~~g~------------~~~~~~~~~~~--~~~~-------  136 (387)
                      ++.+++....       + ..+|+....+|++....+. +..+.            ++..+|.+...  .++.       
T Consensus       142 vE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gal-s~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~  220 (472)
T PRK08742        142 VEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGAL-AVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYAL  220 (472)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhh-hccCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHH
Confidence            9999998631       2 2689999999998654433 01111            11112211100  0011       


Q ss_pred             -ChhhHHHhhc--cCceEEEEeCC--CCCccc-cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCc
Q 038416          137 -DLDGVEALAD--ENTVAIVIINP--GNPCGN-VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIV  210 (387)
Q Consensus       137 -~~~~l~~~~~--~~~~~v~l~~p--~nptG~-~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~  210 (387)
                       +++.+++.++  ++..+.++..|  ++..|. .+|++.++++.++|++||+++|.||++.+|...|..+.. ..++...
T Consensus       221 ~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~-e~~gv~P  299 (472)
T PRK08742        221 QAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFAC-EQAGVMP  299 (472)
T ss_pred             HHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHH-HhcCCCC
Confidence             2455666664  23445566666  566677 467788999999999999999999999998766653322 1222222


Q ss_pred             cEEEEecCcccccccc-cceEEEEeeCCCCcccchhHHHHHHhh-------hhccCCcchHHHHHHHHHhhhccHHHHHH
Q 038416          211 PVITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGFVDSIKGC-------LNAASHPVTFIQAAVPRIVDETNEAFFAK  282 (387)
Q Consensus       211 ~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  282 (387)
                      .   |-+++|.+ .+| +++|.+++++        ++.+.+...       ...+++.++++.+++.+.|+..+++.+.+
T Consensus       300 D---iv~~gKgl-~gG~~Plaav~~~~--------ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l~~  367 (472)
T PRK08742        300 D---LLCLSKGL-TGGFLPLSAVLATQ--------QLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDDVIA  367 (472)
T ss_pred             C---EEEEcccc-cCCCCCcceeeccH--------HHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHCCHHH
Confidence            2   33567995 456 4899999976        666655321       12456788999998888887655544444


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccccc--CCC-c---HHHHHHHHHHhcCeEEEcCCccCCCC
Q 038416          283 IIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE--DIG-D---DLEFCLKLAKEESVIILPGRTVGMKN  356 (387)
Q Consensus       283 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~-~---~~~~~~~ll~~~gi~v~~g~~~~~~~  356 (387)
                      +.+++.+..+.+.+.++++|.+..  ...-|.++-+.+......  ... +   ...+... +.++||.+.+.     .+
T Consensus       368 ~~~~~g~~l~~~~~~~~~~~~i~d--vRG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~-~~~~Gll~~~~-----g~  439 (472)
T PRK08742        368 RNQPTAARMTQLAAQIGEHPHVAD--VRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRA-ALARGVVLRPL-----GD  439 (472)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCeee--EeccceEEEEEeccCccccccCCchhHHHHHHHHH-HHHCCeEEEec-----CC
Confidence            444444333334444555554332  234566666666321110  000 0   1233343 45679999874     36


Q ss_pred             eEEEEee--CChHhHHHHHHHHHHHHHHh
Q 038416          357 WLRIAFA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       357 ~~Ri~~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                      .+|+.+.  .+++++++++++|.+++++.
T Consensus       440 vi~~~PpL~it~~ei~~~~~~l~~~l~~~  468 (472)
T PRK08742        440 VLYWMPPYCVDEAQLALLADTTRHAIDEA  468 (472)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            8999994  68999999999999999875

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.79  E-value=2.8e-17  Score=153.14  Aligned_cols=281  Identities=16%  Similarity=0.116  Sum_probs=200.9

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC-----C---
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR-----P---   96 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-----~---   96 (387)
                      .+++.+.+++...+..+ ........+..++++.+..++.+.++.+ ....=.+|+|+|+++..++.+...     .   
T Consensus        73 ~~~~~a~~~~~~~~~~n-l~d~~~~p~a~~~E~~~v~~l~~l~~~~-~~~~G~~t~GgTean~lal~aar~~~~~~~~~~  150 (460)
T COG0076          73 RVPPVAAELLVSALNKN-LGDPDESPAAAELEERVVNMLSDLLGAP-EEASGTFTSGGTEANLLALLAARERWRKRALAE  150 (460)
T ss_pred             CCHHHHHHHHHHHHhhc-CCCcccChhHHHHHHHHHHHHHHHhCCC-CCCceEEEcChHHHHHHHHHHHHHHHHHHhhhc
Confidence            46667777777777654 3233334467899999999999988765 444567899999999988887531     1   


Q ss_pred             C------CeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceE--EEEeCCCCCccccCCHH
Q 038416           97 G------ANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVA--IVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        97 g------~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--v~l~~p~nptG~~~~~~  168 (387)
                      +      .+|+++.-.|+++...+.  .+|++...+++.+. ++.+|++++++++++++..  |+-+.++.++|.+   +
T Consensus       151 ~~~~~~~P~ii~s~~aH~s~~Kaa~--~lG~~~~~v~~~~~-~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~i---D  224 (460)
T COG0076         151 SGKPGGKPNIVCSETAHFSFEKAAR--YLGLGLRRVPTVPT-DYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSI---D  224 (460)
T ss_pred             ccccCCCCeEEecCcchhHHHHHHH--HhCCCceeEEeccC-ccccCHHHHHHHHHhhccCceEEEEecCCCCCcc---C
Confidence            1      169999999999999999  99999999998765 6799999999999988877  8888889999999   7


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD  248 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~  248 (387)
                      ++++|.++|+++++++++|.+++++...-........+.-..-.-+..+++|. +..-+.+||++.+|++      .+.+
T Consensus       225 di~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~-g~aP~~~G~il~rd~e------~l~~  297 (460)
T COG0076         225 DIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKY-GLAPIGCGVVLFRDEE------ALRR  297 (460)
T ss_pred             CHHHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccc-cCCCCCceEEEEECHH------Hhhh
Confidence            79999999999999999999999876421111111011111112344589999 6777889999999853      2333


Q ss_pred             HHHh--hhh-------c--cCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEE
Q 038416          249 SIKG--CLN-------A--ASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVM  317 (387)
Q Consensus       249 ~~~~--~~~-------~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~  317 (387)
                      .+..  +..       +  .++-+.....+....+...+.+.+.+..++..++++.+.+.|++.+.++.+..|. .+.+.
T Consensus       298 ~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~-l~~V~  376 (460)
T COG0076         298 ILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEPE-LPIVA  376 (460)
T ss_pred             hhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCc-cceEE
Confidence            3321  110       0  1111121333344445555568889999999999999999999997788775564 55666


Q ss_pred             EecC
Q 038416          318 VKLN  321 (387)
Q Consensus       318 ~~~~  321 (387)
                      ++++
T Consensus       377 fr~~  380 (460)
T COG0076         377 FRLK  380 (460)
T ss_pred             EEcC
Confidence            6664

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.79  E-value=3e-16  Score=147.73  Aligned_cols=332  Identities=16%  Similarity=0.139  Sum_probs=192.8

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc--CCCCeEEEc
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA--RPGANILIP  103 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~g~~vl~~  103 (387)
                      .+|.+.+++++++.+...  ........+.+..+++.+.+..  +...+.+++++++++|++.+++...  ....+|+..
T Consensus        70 ~~p~i~~Ai~~ql~~~~~--~~~~~~~~~~~~~lae~L~~~~--p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~  145 (457)
T PRK05639         70 SHPKLVKAVQEQVALIQH--SMIGYTHSERAIRVAEKLAEIS--PIENPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAF  145 (457)
T ss_pred             CCHHHHHHHHHHHHhccc--cccCccCCHHHHHHHHHHHhhC--CCCcCEEEEeCchHHHHHHHHHHHHHhcCCCeEEEE
Confidence            677899999999875311  1111111233344555554432  2223689999999999999998864  233679999


Q ss_pred             CCCCcchHHHhhccCCC--------c-----eeeeeccCCCCC--cc----CCh--------hhHHHhh-----ccCceE
Q 038416          104 RPGYPLYEIHAAGSNNN--------L-----EARHYDLLPEKR--WE----VDL--------DGVEALA-----DENTVA  151 (387)
Q Consensus       104 ~p~~~~~~~~~~~~~~g--------~-----~~~~~~~~~~~~--~~----~~~--------~~l~~~~-----~~~~~~  151 (387)
                      ..+|++....+. +..+        .     ++..+|.+....  +.    .+.        +.+++.+     .++..+
T Consensus       146 ~~~yHG~t~~a~-s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iA  224 (457)
T PRK05639        146 IGAYHGQTLGAT-SVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVA  224 (457)
T ss_pred             CCCcCCccHHHH-HHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceE
Confidence            999988654322 0111        1     122333221100  00    012        2344433     133445


Q ss_pred             EEEeCC-CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCCccEEEEecCcccccccccc
Q 038416          152 IVIINP-GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVITLGSISKRWIVPGWR  228 (387)
Q Consensus       152 v~l~~p-~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~s~sK~~~~~g~r  228 (387)
                      .++..| +...|.. +|++.++++.++|++||+++|+||++.+|...|..+.. .....+|   ++  .++|.+ .+|++
T Consensus       225 AvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PD---iv--~~gK~l-~gG~p  298 (457)
T PRK05639        225 ALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPD---LI--IFGKGV-ASGMG  298 (457)
T ss_pred             EEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCCCC---EE--Eechhh-cCCCc
Confidence            556666 6666774 56778999999999999999999999987655543221 1122222   32  378996 45789


Q ss_pred             eEEEEeeCCCCcccchhHHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc----CCCC
Q 038416          229 LGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE----IPCI  304 (387)
Q Consensus       229 ~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~  304 (387)
                      +|.+++++        ++.+........++..++...+++.+.|+...++.+   .+...++-+++++.|++    .+-+
T Consensus       299 i~av~~~~--------~i~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~l---~~~~~~~g~~l~~~L~~l~~~~~~~  367 (457)
T PRK05639        299 LSGVIGRK--------ELMDLTSGSALLTPAANPVISAAAEATLEIIEEENL---LKNALKVGEFIKKRLLEMKESFEVI  367 (457)
T ss_pred             ceeEEehH--------HHHhhcCCCcccCCCcCHHHHHHHHHHHHHHHHccH---HHHHHHHHHHHHHHHHHHHHhCCCE
Confidence            99999976        555522111123556788888887777775443322   23333344444444443    4322


Q ss_pred             CCCCCCCceEEEEEecCccc-ccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHH
Q 038416          305 TCPVKPQGAMFVMVKLNVSM-LEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       305 ~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~  381 (387)
                      ..  ...-|.++.+.+..+. .+.......+... +.++|+.+.+...  ..+.+|+.+.  +++++++++++.|.++++
T Consensus       368 ~~--VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~-~~~~Gv~~~~~g~--~~~~lr~~Ppl~it~~~id~~~~~l~~~l~  442 (457)
T PRK05639        368 GD--VRGKGLMIGVEIVKENGKPDPELTGKICWR-AFELGLILPSYGM--FGNVIRITPPLVITKEIAEKGLEIMERAIK  442 (457)
T ss_pred             Ee--eccceeEEEEEEecCCCCCCHHHHHHHHHH-HHhCCeEEeecCC--CCCEEEEeCCCccCHHHHHHHHHHHHHHHH
Confidence            21  2344666666653211 1100012234444 4567999876421  1478999994  689999999999999998


Q ss_pred             Hhh
Q 038416          382 RHA  384 (387)
Q Consensus       382 ~~~  384 (387)
                      +..
T Consensus       443 ~~~  445 (457)
T PRK05639        443 DAL  445 (457)
T ss_pred             HHH
Confidence            764

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.79  E-value=5.9e-17  Score=133.98  Aligned_cols=324  Identities=14%  Similarity=0.145  Sum_probs=208.9

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCC--------CCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCC
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYS--------PTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARP   96 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~--------~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~   96 (387)
                      -++++.++|+.+.-..=....|-        .-+-...+.+.+++|+        .-|.+-+|+|+.++=++++++++++
T Consensus        28 iLt~eArkal~E~gDGYSvCD~C~~Grldei~kPpI~~F~~dlaeFl--------g~D~~R~t~GARe~KfavMhal~~~   99 (382)
T COG1103          28 ILTEEARKALLEWGDGYSVCDFCLEGRLDEITKPPIKDFLEDLAEFL--------GMDEVRVTAGAREAKFAVMHALCKE   99 (382)
T ss_pred             cCCHHHHHHHHHhcCCcchhhhhccCccccccCCcHHHHHHHHHHHh--------CCceeeecccchhhHHHHHHHhccC
Confidence            47888888877754321000010        0112345667788888        4588899999999999999999999


Q ss_pred             CCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc-------CceEEEEeCCCCCccccCCHHH
Q 038416           97 GANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE-------NTVAIVIINPGNPCGNVFSYQH  169 (387)
Q Consensus        97 g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~v~l~~p~nptG~~~~~~~  169 (387)
                      ||.|++...+|+.....+.  +.|+++..+|-.....+.++++...+.++.       .+.+.+++++...-|.+   .+
T Consensus       100 gd~vV~D~~aHYttyvAAE--ragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl---~D  174 (382)
T COG1103         100 GDWVVVDSLAHYTTYVAAE--RAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNL---AD  174 (382)
T ss_pred             CCEEEEcCcchHHHHHHHH--hcCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCc---hh
Confidence            9999999999998888888  999999999865555688898876665532       35667888887667777   56


Q ss_pred             HHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHH
Q 038416          170 LQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDS  249 (387)
Q Consensus       170 ~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~  249 (387)
                      -+.++++|++++++++...+|..    |..+.+......+   ++++|-+|++ .+..++|.+-.+.        +|.+.
T Consensus       175 akkva~ic~e~gvPlllN~AYt~----Grmpvs~ke~g~D---FiVgSGHKsm-AAs~PiGvl~~~e--------E~ae~  238 (382)
T COG1103         175 AKKVAKICREYGVPLLLNCAYTV----GRMPVSGKEIGAD---FIVGSGHKSM-AASAPIGVLAMSE--------EWAEI  238 (382)
T ss_pred             hHHHHHHHHHcCCceEeecceee----ccccccccccCCC---EEEecCccch-hccCCeeEEeehh--------HHHHH
Confidence            89999999999999999999986    4445555556555   9999999995 5666899998865        56655


Q ss_pred             HHhhhhccC--------CcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecC
Q 038416          250 IKGCLNAAS--------HPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLN  321 (387)
Q Consensus       250 ~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~  321 (387)
                      .-+.....+        +.+..+.-.+..+-....-...-++++.--+..+.+.+.|+.+.|+... ....-..-.+.|.
T Consensus       239 V~r~Sg~~~~~KEvellGCT~rGapivTlmASfP~V~eRVkrWdeEv~kaR~fv~elEkigg~~ql-G~rPk~HdLm~Fe  317 (382)
T COG1103         239 VLRRSGRAFPKKEVELLGCTVRGAPIVTLMASFPHVVERVKRWDEEVEKARWFVAELEKIGGVKQL-GERPKNHDLMKFE  317 (382)
T ss_pred             HHhhcccccccceeeeecccccCchHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh-CCCCcccceeeec
Confidence            543221000        0111111111111111000111222223334555677788887655533 2111112223333


Q ss_pred             cccccCCC----c-HHHHHHHHHHhcCeE-EEcCCccCCCCeEEEEe-eCChHhHHHHHHHHHHHHHHh
Q 038416          322 VSMLEDIG----D-DLEFCLKLAKEESVI-ILPGRTVGMKNWLRIAF-AAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       322 ~~~~~~~~----~-~~~~~~~ll~~~gi~-v~~g~~~~~~~~~Ri~~-~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      .+.+-.++    . ..-+..+| +++||. +.||    ...+|.+|+ +.+.|+++..++.++++++++
T Consensus       318 tp~f~eIakk~~r~gyFlY~EL-K~RgI~GI~~G----~Tk~~K~svyGl~~Eqve~V~~afkeI~eky  381 (382)
T COG1103         318 TPVFHEIAKKHKRKGYFLYEEL-KKRGIHGIQPG----QTKYFKLSVYGLSWEQVEYVVDAFKEIAEKY  381 (382)
T ss_pred             CchHHHHHHhCcCCceeeHHHH-HhcCccccccC----ceeEEEEEeecCCHHHHHHHHHHHHHHHHhc
Confidence            32211000    0 11134444 677876 4455    368999999 789999999999999998875

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.79  E-value=1e-15  Score=140.25  Aligned_cols=307  Identities=16%  Similarity=0.123  Sum_probs=196.9

Q ss_pred             CCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHH-hhccCCCcee
Q 038416           45 CYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIH-AAGSNNNLEA  123 (387)
Q Consensus        45 ~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~-~~~~~~g~~~  123 (387)
                      .|.....+.+|++.+++++        ..+.++.|++++.|+.++....+++||.|  +...|...... ..  ..|..+
T Consensus        73 ~Yagd~s~~~LE~~vAe~l--------G~e~aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~ahI~--~~Ga~f  140 (460)
T PRK13237         73 AYAGSRNFYHLEETVQEYY--------GFKHVVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTRYHQE--LNGGIF  140 (460)
T ss_pred             hhcCCCcHHHHHHHHHHHH--------CCCeEEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhHHHHH--hCCcEE
Confidence            4777778899999999999        34679999999999999877778999964  55555544333 55  667754


Q ss_pred             eeeccC--------CCCCccCChhhHHHhhccC----ceEEEEeCCCCCc-cccCCHHHHHHHHHHHHhcCcEEeecccc
Q 038416          124 RHYDLL--------PEKRWEVDLDGVEALADEN----TVAIVIINPGNPC-GNVFSYQHLQKIARTARNLGIIVIADEVY  190 (387)
Q Consensus       124 ~~~~~~--------~~~~~~~~~~~l~~~~~~~----~~~v~l~~p~npt-G~~~~~~~~~~l~~~~~~~~~~li~D~~~  190 (387)
                      ..+..+        ...++.+|++.+++++++.    +..+.+.+++|.. |+..|.++++++.++|++||+.||+|.++
T Consensus       141 vDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAr  220 (460)
T PRK13237        141 VDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATR  220 (460)
T ss_pred             EeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcc
Confidence            444211        1234679999999998753    3456777777766 79999999999999999999999999998


Q ss_pred             ccc----c------cCCCCCc----cccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhh-
Q 038416          191 NHL----A------FGSTPYV----PMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLN-  255 (387)
Q Consensus       191 ~~~----~------~~~~~~~----~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-  255 (387)
                      ..-    .      +.+....    .+.++.    ...+.|++|.++.+-  .|++++++       +++.++++...- 
T Consensus       221 a~gna~fI~~re~~y~~~~i~ei~~e~~s~a----D~~t~S~~K~~~~~~--GG~i~t~D-------~eL~~~~r~~~~~  287 (460)
T PRK13237        221 CVENAYFIKEREEGYQDKSIKEIVHEMFSYA----DGCTMSGKKDCLVNI--GGFLAMND-------EELFDEAKELVVV  287 (460)
T ss_pred             hhcChhhhcccccccCCCcHhHHhhhccCcC----cEEEEeCCCCCCCCC--ceEEEECC-------HHHHHHHHHhccc
Confidence            732    1      2221111    011121    266778999976542  37777765       468888876631 


Q ss_pred             ---c-c-CCcchHHHHHHHHHhhh-ccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCc--ccccC
Q 038416          256 ---A-A-SHPVTFIQAAVPRIVDE-TNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNV--SMLED  327 (387)
Q Consensus       256 ---~-~-~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~  327 (387)
                         + + ++.+.--..+++..|.+ ..+.++..+.+    +.+++.+.|.+. |+.++ .|.+|.-++++...  +.+|.
T Consensus       288 ~eG~~tygg~~grd~~alAvgl~E~~~~~y~~~ri~----~~~~l~~~L~~~-Gvpv~-~p~ggH~v~vda~~~lph~~~  361 (460)
T PRK13237        288 YEGMPSYGGMAGRDMEAMAIGIEESVQYEYIEHRVG----QVRYLGEKLLAA-GVPIV-EPVGGHAVFLDARRFLPHLPQ  361 (460)
T ss_pred             cCCCcCCCChhhhHHHHHHhHHHhhchHHHHHHHHH----HHHHHHHHHHHC-CCcee-cCCCceEEEEEhHHhCCCCCc
Confidence               1 1 11112123333333332 22344444444    455666777666 78745 78888888775432  11111


Q ss_pred             -CCcHHHHHHHHHHhcCeEEE-cCCcc-CC-----------CCeEEEEee---CChHhHHHHHHHHHHHHHH
Q 038416          328 -IGDDLEFCLKLAKEESVIIL-PGRTV-GM-----------KNWLRIAFA---AEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       328 -~~~~~~~~~~ll~~~gi~v~-~g~~~-~~-----------~~~~Ri~~~---~~~e~~~~~~~~l~~~~~~  382 (387)
                       --....++.+|..+.||-.. -|+.. +.           -..+|+.+.   -+.+.++...++|..+.++
T Consensus       362 ~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~  433 (460)
T PRK13237        362 DQFPAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKH  433 (460)
T ss_pred             ccChHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHh
Confidence             11456778888888888654 22221 11           146999993   3788888888888776654

>PLN02452 phosphoserine transaminase

Probab=99.78  E-value=2.1e-16  Score=143.96  Aligned_cols=334  Identities=15%  Similarity=0.041  Sum_probs=213.0

Q ss_pred             ccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCC--------CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCC
Q 038416           10 RHSPWPRRPLGVSLLSDSTVAEDAVVDALRTA--------HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLG   81 (387)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~--------~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g   81 (387)
                      +++++||.      ..+|+.|++++++.+.+-        ..+++++  ...++-+.+.+.+++.++.+-+.+-++++.|
T Consensus         8 ~~~f~pGP------~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~--~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gs   79 (365)
T PLN02452          8 VFNFSAGP------ATLPANVLAKAQAELYNWEGSGMSVMEMSHRGK--EFLSIIQKAEADLRELLDIPDNYEVLFLQGG   79 (365)
T ss_pred             eEeeeCCC------CCCCHHHHHHHHHHHhcccccCccccccCCCch--HHHHHHHHHHHHHHHHhCCCCCceEEEEeCc
Confidence            45677873      378999999999875431        0223332  3445555555666655554333344567788


Q ss_pred             hHHHHHHHHHhhcCCCCeEEEcCCCCcc--hHHHhhccCCCceeeeeccCC-CCCccCChhhHHHhhccCceEEEEeCCC
Q 038416           82 CSQAIEISLSVLARPGANILIPRPGYPL--YEIHAAGSNNNLEARHYDLLP-EKRWEVDLDGVEALADENTVAIVIINPG  158 (387)
Q Consensus        82 ~~~a~~~~~~~l~~~g~~vl~~~p~~~~--~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~v~l~~p~  158 (387)
                      +|.+++++...|+.+|+++++...+.++  +.+.++  ..|...+...... .....+++++++  .+++.+.|.+++..
T Consensus        80 gt~~~ea~~~nl~~~~~~~l~~~~G~fg~r~~~~a~--~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~hnE  155 (365)
T PLN02452         80 ASTQFAAIPLNLCKPGDKADFVVTGSWSKKAAKEAK--KYCKTNVIASGKDEKYTKIPSVSEWE--LTPDAKFVHICANE  155 (365)
T ss_pred             cHHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHH--HhCCCcEEEecCCCCCCCCCChHHcC--CCCCCcEEEECCCC
Confidence            9999999999999999999988888775  345556  6665333321111 111234555542  24567888888888


Q ss_pred             CCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCC
Q 038416          159 NPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPN  238 (387)
Q Consensus       159 nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~  238 (387)
                      ..||+.+++  +.++.      ++++|+|.+.+..    ..+.++..++     +...|..|.+|++|  +|++++++..
T Consensus       156 TstGv~~~~--~~~i~------~~~lvVDa~Ss~g----~~pidv~~~~-----v~~~saqK~lGP~G--l~~v~vr~~~  216 (365)
T PLN02452        156 TIHGVEFKD--YPDVG------NVPLVADMSSNFL----SKPVDVSKYG-----VIYAGAQKNVGPSG--VTIVIIRKDL  216 (365)
T ss_pred             CCCcEecCc--ccccC------CCeEEEECCcccc----CcccCHHHcC-----EEEEecccccCCCC--eEEEEEcHHH
Confidence            899996432  44443      3899999999852    2233333333     33469999999888  7888887521


Q ss_pred             Ccc---cchhHHHHHH--hhhhccCCcchHHHHHHHHHhhhccHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCC-
Q 038416          239 GIL---QNSGFVDSIK--GCLNAASHPVTFIQAAVPRIVDETNEA-FFAKIIGLLKETADICYERIKEIPCITCP-VKP-  310 (387)
Q Consensus       239 ~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~-  310 (387)
                      .-.   ..|.+.+.-.  +..+...+|+.+..+++..+|+...++ .++.+.++.+++++++++.|++.+|+... ..+ 
T Consensus       217 l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~  296 (365)
T PLN02452        217 IGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKS  296 (365)
T ss_pred             HhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChH
Confidence            000   0011111110  111233578888888888888876554 78999999999999999999987676211 111 


Q ss_pred             -CceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHHHH
Q 038416          311 -QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       311 -~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~  382 (387)
                       ...+.+.+.++..     ....++... ++++|+...+|...-.  .+|+|+  +.+.++++++++.+++.-++
T Consensus       297 ~rs~~~vsF~~~~~-----~~~~~f~~~-~~~~g~~~~~G~r~~g--g~R~s~yna~~~~~v~~L~~~m~~f~~~  363 (365)
T PLN02452        297 VRSLMNVPFTLGGS-----ELEAEFVKE-AAKAGMVQLKGHRSVG--GMRASIYNAMPLAGVEKLVAFMKDFQAK  363 (365)
T ss_pred             HhCCeEEEEEcCCc-----hhHHHHHHH-HHHCCCcccCCccccC--ceEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence             1333444444431     134455555 5788999999875432  399999  56889999999998887665

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.78  E-value=9.9e-18  Score=137.70  Aligned_cols=165  Identities=18%  Similarity=0.132  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchH-HHhhccCCCceeeeeccCCC
Q 038416           53 PSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYE-IHAAGSNNNLEARHYDLLPE  131 (387)
Q Consensus        53 ~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~-~~~~~~~~g~~~~~~~~~~~  131 (387)
                      .++++.+++++.      .+.+++++++|+++++..++.++.+++++|+++.++|++.. ..+.  ..|.++..++.+..
T Consensus         3 ~~~~~~l~~~~~------~~~~~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~g~~~~~v~~~~~   74 (170)
T cd01494           3 EELEEKLARLLQ------PGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAE--LAGAKPVPVPVDDA   74 (170)
T ss_pred             HHHHHHHHHHcC------CCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehhhHHH--hcCCEEEEeccCCC
Confidence            578889998883      46789999999999999999999888999999999999888 7778  89999999987644


Q ss_pred             CCccCChhhHHHhh-ccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCc
Q 038416          132 KRWEVDLDGVEALA-DENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIV  210 (387)
Q Consensus       132 ~~~~~~~~~l~~~~-~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~  210 (387)
                      .....+.+.+++.. .++++++++++++|++|...+   +++|.++|+++|+++|+|++|..+...... ...   ...+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~~~~-~~~---~~~~  147 (170)
T cd01494          75 GYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVP---LKEIRKIAKEYGILLLVDAASAGGASPAPG-VLI---PEGG  147 (170)
T ss_pred             CccchhhhhhhhccccCceEEEEEecCcCCCCeEcC---HHHHHHHHHHcCCEEEEecccccccccccc-ccc---cccc
Confidence            33333333554433 467889999999999999987   488888899999999999999986654321 111   1122


Q ss_pred             cEEEEecCcccccccccceEEEEe
Q 038416          211 PVITLGSISKRWIVPGWRLGWLVT  234 (387)
Q Consensus       211 ~~~~i~s~sK~~~~~g~r~G~i~~  234 (387)
                      ..+++.|++|.++.  .++|++++
T Consensus       148 ~d~~~~s~~K~~~~--~~~G~l~~  169 (170)
T cd01494         148 ADVVTFSLHKNLGG--EGGGVVIV  169 (170)
T ss_pred             CCEEEEEcccccCC--CceEEEEe
Confidence            34888999999765  67899876

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.78  E-value=3.4e-16  Score=147.39  Aligned_cols=341  Identities=13%  Similarity=0.087  Sum_probs=196.9

Q ss_pred             ccccCCCCCCCCCCCCCC-CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLS-DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI   86 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~   86 (387)
                      ..|+|.+-|.-...  ++ .+|.+.+++++++.....  +..   ..+++..+++.+.+..+   ..+.+.+++++++|+
T Consensus        99 ~~yiD~~~g~g~~~--lGh~~p~v~~av~~ql~~~~~--~~~---~~~~~~~lAe~l~~~~p---~~~~v~f~~SGsEA~  168 (474)
T PLN02482         99 NEYIDYVGSWGPAI--IGHADDEVLAALAETMKKGTS--FGA---PCLLENVLAEMVIDAVP---SVEMVRFVNSGTEAC  168 (474)
T ss_pred             CEEEEecccccccc--cCCCCHHHHHHHHHHHhhCCC--CCC---CCHHHHHHHHHHHHhCC---CCCEEEEeCChHHHH
Confidence            35556544432111  23 568999999999986432  222   12455566666655432   247999999999999


Q ss_pred             HHHHHhhc--CCCCeEEEcCCCCcchHHHhh-ccCCCceee------eeccCCC-----CCccCChhhHHHhhcc--Cce
Q 038416           87 EISLSVLA--RPGANILIPRPGYPLYEIHAA-GSNNNLEAR------HYDLLPE-----KRWEVDLDGVEALADE--NTV  150 (387)
Q Consensus        87 ~~~~~~l~--~~g~~vl~~~p~~~~~~~~~~-~~~~g~~~~------~~~~~~~-----~~~~~~~~~l~~~~~~--~~~  150 (387)
                      +.+++...  ...++|+....+|+++...+. .+..+....      .++....     -.+ -|++.+++.++.  +..
T Consensus       169 e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-nd~~~l~~~l~~~~~~i  247 (474)
T PLN02482        169 MGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPY-NDLEAVKKLFEANKGEI  247 (474)
T ss_pred             HHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecC-CChHHHHHHHHhCCCce
Confidence            99998864  223689989999998653221 000111000      0000000     001 167888887753  334


Q ss_pred             EEEEeCC-CCCccccC-CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccc
Q 038416          151 AIVIINP-GNPCGNVF-SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWR  228 (387)
Q Consensus       151 ~v~l~~p-~nptG~~~-~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r  228 (387)
                      +.++..| ....|.+. +++.++++.++|++||+++|+||++.++. .+... ....++....   +.+++|.++ +|++
T Consensus       248 AavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGfR-~g~~g-a~~~~gv~PD---i~t~gK~lg-gG~P  321 (474)
T PLN02482        248 AAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGFR-IAYGG-AQEYFGITPD---LTTLGKVIG-GGLP  321 (474)
T ss_pred             EEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCee-cCcch-HhHHhCCCCC---EEEecchhh-CCCc
Confidence            5556666 56677765 46789999999999999999999998873 33221 1111222111   347899965 7799


Q ss_pred             eEEEEeeCCCCcccchhHHHHHHhh----hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCC--
Q 038416          229 LGWLVTSDPNGILQNSGFVDSIKGC----LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIP--  302 (387)
Q Consensus       229 ~G~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--  302 (387)
                      +|.+++++        ++.+.+...    ...+++.+++...++.+.|+...+.   ...+++.++-+++++.|+++.  
T Consensus       322 igav~g~~--------ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~---~~~~~~~~~g~~l~~~L~~l~~~  390 (474)
T PLN02482        322 VGAYGGRR--------EIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQP---GTYEYLDKITKKLIQGILEAGKK  390 (474)
T ss_pred             eEEEEEcH--------HHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHHHHHHHh
Confidence            99998875        677776521    1234557888888877777654321   234444445555555554420  


Q ss_pred             -CCCCCCCCCceEEEEEecCcccc--------cCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHH
Q 038416          303 -CITCPVKPQGAMFVMVKLNVSML--------EDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGL  373 (387)
Q Consensus       303 -~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~  373 (387)
                       ++........+++ .+.+.....        ++......+...+ .++||.+.|...   +.+ -+++.++++|+++++
T Consensus       391 ~g~~~~~~~v~g~~-gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l-~~~Gv~~~~~~~---~~~-~psl~ht~~dId~~l  464 (474)
T PLN02482        391 AGHEMCGGYISGMF-GFFFTEGPVYNFADAKKSDTAKFARFHRGM-LEEGVYLAPSQF---EAG-FTSLAHTEEDIDFTI  464 (474)
T ss_pred             cCCCEEEcccceEE-EEEEecCCccChhhhccCCHHHHHHHHHHH-HHCCeEEeccCC---CCC-cCCCCCCHHHHHHHH
Confidence             2221111222332 222321100        0000112344444 567999987421   111 156678999999999


Q ss_pred             HHHHHHHHH
Q 038416          374 ERIKAFCQR  382 (387)
Q Consensus       374 ~~l~~~~~~  382 (387)
                      +++.+++++
T Consensus       465 ~al~~~l~~  473 (474)
T PLN02482        465 AAAERVLAR  473 (474)
T ss_pred             HHHHHHHHh
Confidence            999998875

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.78  E-value=4e-16  Score=145.74  Aligned_cols=346  Identities=14%  Similarity=0.037  Sum_probs=196.8

Q ss_pred             cccCCCCCCCCCCCCCC-CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLS-DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      .+++..-|.-..  .++ .+|.+.+++++++.......+.     .+.+.++++.+.+..+  ...+.+++++++++|++
T Consensus        54 ~yiD~~~g~~~~--~lGh~~p~v~~ai~~q~~~~~~~~~~-----~~~~~~la~~L~~~~~--~~~~~v~f~~SGsEA~e  124 (433)
T PRK00615         54 TFIDFCGSWGSL--IHGHSHPKICDAIQQGAERGTSYGLT-----SEQEILFAEELFSYLG--LEDHKIRFVSSGTEATM  124 (433)
T ss_pred             EEEEcccchhcc--ccCCCCHHHHHHHHHHHHhCCCCCCC-----CHHHHHHHHHHHHhCC--CCcCEEEEeCchHHHHH
Confidence            455554443211  233 6889999999998764321211     2334445555544322  22368999999999999


Q ss_pred             HHHHhhcC-CC-CeEEEcCCCCcchHHH-h-hccCCCce---e-eeeccCC-CCC-c---cCChhhHHHhhcc--CceEE
Q 038416           88 ISLSVLAR-PG-ANILIPRPGYPLYEIH-A-AGSNNNLE---A-RHYDLLP-EKR-W---EVDLDGVEALADE--NTVAI  152 (387)
Q Consensus        88 ~~~~~l~~-~g-~~vl~~~p~~~~~~~~-~-~~~~~g~~---~-~~~~~~~-~~~-~---~~~~~~l~~~~~~--~~~~v  152 (387)
                      .+++.... .| .+|+....+|+++... . ..+..+..   . ......+ ... .   .-|++.+++.+..  +..+.
T Consensus       125 ~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aa  204 (433)
T PRK00615        125 TAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAG  204 (433)
T ss_pred             HHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcCCceEE
Confidence            99997642 23 6788889999886422 1 10011100   0 0000000 000 0   0157788887742  23345


Q ss_pred             EEeCC-CCCccccC-CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceE
Q 038416          153 VIINP-GNPCGNVF-SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLG  230 (387)
Q Consensus       153 ~l~~p-~nptG~~~-~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G  230 (387)
                      ++..| ....|... +++.+++|.++|++||+++|+||++.++. .|.. .....++.... +  .+++|.++ .|+++|
T Consensus       205 vI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~R-~G~~-ga~~~~gv~PD-i--~~~gK~lg-gG~p~~  278 (433)
T PRK00615        205 VIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGFR-VAQG-GAAAIYHVKPD-I--TVYGKILG-GGLPAA  278 (433)
T ss_pred             EEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccccc-ccHh-HHHHhcCCCCC-e--EEEccccc-CCccee
Confidence            55666 55567754 56779999999999999999999998773 3321 11111221112 2  25899964 568899


Q ss_pred             EEEeeCCCCcccchhHHHHHHhhh----hccCCcchHHHHHHHHHhhhccHH-HHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 038416          231 WLVTSDPNGILQNSGFVDSIKGCL----NAASHPVTFIQAAVPRIVDETNEA-FFAKIIGLLKETADICYERIKEIPCIT  305 (387)
Q Consensus       231 ~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~  305 (387)
                      ++++++        ++.+.+....    ..+++.++...+++.+.|+...++ .+++..+.-...++.+.+.+.+. ++.
T Consensus       279 av~~~~--------~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~-g~~  349 (433)
T PRK00615        279 AVVAHK--------SIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGFYTQLSTLEQNFLSPIEEMIRSQ-GFP  349 (433)
T ss_pred             eeeecH--------HHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence            999976        6777764321    234556888888888877754322 22222233333333334444442 222


Q ss_pred             CCCCCCceEEEEEecCcccccCC--------CcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHH
Q 038416          306 CPVKPQGAMFVMVKLNVSMLEDI--------GDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIK  377 (387)
Q Consensus       306 ~~~~~~~g~~~~~~~~~~~~~~~--------~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~  377 (387)
                      +. ....|.++.+.+.......+        .....+..++ .++||.+.|...   +. .=++...++++++++++.+.
T Consensus       350 v~-~~r~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~~---~~-~~ls~~ht~~did~~~~a~~  423 (433)
T PRK00615        350 VS-LVRYGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSA-FSKGVYLSPSPF---EA-SFLSSAHSMENLDYAQNVLI  423 (433)
T ss_pred             eE-EEeeceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHH-HHCCeeecCccc---cc-cceecCCCHHHHHHHHHHHH
Confidence            11 11246666666643211000        0112344444 567999987532   11 23566789999999999999


Q ss_pred             HHHHHhh
Q 038416          378 AFCQRHA  384 (387)
Q Consensus       378 ~~~~~~~  384 (387)
                      +++++..
T Consensus       424 ~~~~~~~  430 (433)
T PRK00615        424 DSLEKVF  430 (433)
T ss_pred             HHHHHHh
Confidence            9998764

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.77  E-value=3.3e-16  Score=147.81  Aligned_cols=329  Identities=14%  Similarity=0.074  Sum_probs=197.0

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC-------CC-
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR-------PG-   97 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-------~g-   97 (387)
                      .+|.+.+++++++.....  ........+.+..+++.+.+..  +...+.+++++++++|++.+++....       +| 
T Consensus        64 ~~p~v~~Ai~~ql~~l~~--~~~~~~~~~~~~~lae~L~~~~--p~~~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r  139 (466)
T PRK07030         64 ANPRINQRIKDQVDQLEH--VILAGFSHEPVIELSERLVKIT--PPGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRK  139 (466)
T ss_pred             CCHHHHHHHHHHHHhcCC--ccccccCCHHHHHHHHHHHHhC--CCCcCEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCC
Confidence            567899999999875311  1111112244455555554432  22346899999999999999988631       23 


Q ss_pred             CeEEEcCCCCcchHHHhhccCCCc------------eeeeeccCCCC--CccC--------ChhhHHHhhcc--CceEEE
Q 038416           98 ANILIPRPGYPLYEIHAAGSNNNL------------EARHYDLLPEK--RWEV--------DLDGVEALADE--NTVAIV  153 (387)
Q Consensus        98 ~~vl~~~p~~~~~~~~~~~~~~g~------------~~~~~~~~~~~--~~~~--------~~~~l~~~~~~--~~~~v~  153 (387)
                      .+|+....+|++....+. +..+.            .+..+|.+...  .++.        +++.+++.++.  +..+.+
T Consensus       140 ~~ii~~~~~yHG~t~ga~-s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~~~~iAAv  218 (466)
T PRK07030        140 KRFVTLTNSYHGETLAAM-SVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEHHDEIAAV  218 (466)
T ss_pred             cEEEEECCCcCcccHHHH-hccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEE
Confidence            578999999988653333 01111            11122211100  0011        24556666642  344555


Q ss_pred             EeCC--CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccc-cce
Q 038416          154 IINP--GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPG-WRL  229 (387)
Q Consensus       154 l~~p--~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g-~r~  229 (387)
                      +..|  +...|.. +|++.++++.++|++||+++|+||++.+|...|..+.. ..++....   +-+++|.++ +| +++
T Consensus       219 i~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~-~~~gv~PD---iv~~gKgl~-gG~~Pi  293 (466)
T PRK07030        219 IVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFAC-EQAGIRPD---FLCLSKALT-GGYLPL  293 (466)
T ss_pred             EEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHH-HhcCCCCC---EEeeehhcc-CCcccc
Confidence            6666  5666774 66778999999999999999999999998766643221 12222222   335689954 67 599


Q ss_pred             EEEEeeCCCCcccchhHHHHHHh-------h-hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc-
Q 038416          230 GWLVTSDPNGILQNSGFVDSIKG-------C-LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE-  300 (387)
Q Consensus       230 G~i~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-  300 (387)
                      |.+++++        ++.+.+..       . ...+++.++++++++.+.|+...++.+   .++.++.-+++.+.|++ 
T Consensus       294 ~av~~~~--------ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l---~~~~~~~G~~l~~~L~~l  362 (466)
T PRK07030        294 AAVLTTD--------TVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNV---IENNRALARRMAEATAHL  362 (466)
T ss_pred             eEEEecH--------HHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHH
Confidence            9999976        67666632       1 124567889999988888876544333   23333334444444433 


Q ss_pred             --CCCCCCCCCCCceEEEEEecCcccc--cCCC-c---HHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHH
Q 038416          301 --IPCITCPVKPQGAMFVMVKLNVSML--EDIG-D---DLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLE  370 (387)
Q Consensus       301 --~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~-~---~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~  370 (387)
                        .|.+..  ...-|.++.+.+.....  .... +   ...+... +.++|+.+.+.     .+.+|+.+  .+++++++
T Consensus       363 ~~~~~v~~--vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~-~~~~Gvl~~~~-----g~~i~~~Ppl~it~~eid  434 (466)
T PRK07030        363 ADHPHVAE--VRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQH-ALERGALLRPL-----GSVVYFLPPYVITPEQID  434 (466)
T ss_pred             hcCCCEEE--eEeceeEEEEEeccCccccccCcchhHHHHHHHHH-HHHCCeEEEec-----CCEEEEECCccCCHHHHH
Confidence              443331  23446676666632110  0000 1   1234444 45679999773     25789886  46899999


Q ss_pred             HHHHHHHHHHHHh
Q 038416          371 DGLERIKAFCQRH  383 (387)
Q Consensus       371 ~~~~~l~~~~~~~  383 (387)
                      .+++++.++++++
T Consensus       435 ~~~~~l~~al~~~  447 (466)
T PRK07030        435 FLAEVASEGIDIA  447 (466)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999876

>PRK07036 hypothetical protein; Provisional

Probab=99.77  E-value=8.6e-16  Score=145.14  Aligned_cols=331  Identities=17%  Similarity=0.179  Sum_probs=195.2

Q ss_pred             CcHHHHHHHHHHhcCCCC-CCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc------C-C-
Q 038416           26 DSTVAEDAVVDALRTAHY-NCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA------R-P-   96 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~-~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~------~-~-   96 (387)
                      .+|.+.+++++++..... ..+.  ....+.+..+++.+....+  ..-+.+++++++++|++.+++...      + . 
T Consensus        68 ~~p~v~~Ai~~q~~~~~~~~~~~--~~~~~~~~~lae~L~~~~p--~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~  143 (466)
T PRK07036         68 GREEMADAIADQARRLPYYTPFG--DMTNAPAAELAAKLAELAP--GDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPA  143 (466)
T ss_pred             CCHHHHHHHHHHHHhCccccccc--ccCCHHHHHHHHHHHHhCC--CCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCC
Confidence            578899999998875311 1111  0123445566666654332  224689999999999999998752      1 2 


Q ss_pred             CCeEEEcCCCCcchHHHhhccCCCc------------eeeeeccCCC--CCccCC--------hhhHHHhhc---cCceE
Q 038416           97 GANILIPRPGYPLYEIHAAGSNNNL------------EARHYDLLPE--KRWEVD--------LDGVEALAD---ENTVA  151 (387)
Q Consensus        97 g~~vl~~~p~~~~~~~~~~~~~~g~------------~~~~~~~~~~--~~~~~~--------~~~l~~~~~---~~~~~  151 (387)
                      ..+|+....+|++....+. +..+.            .+..++.+..  ..++.+        ++.+++.+.   ++..+
T Consensus       144 r~~Ii~~~~~YHG~t~~a~-s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iA  222 (466)
T PRK07036        144 KKHIITRGDAYHGSTYLTA-SLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSLGADNIA  222 (466)
T ss_pred             ccEEEEEcCccCCccHhhh-cccCCCcccccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHcCCCceE
Confidence            2688988999988654433 01111            1222222110  011111        233444442   23444


Q ss_pred             EEEeCC-CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccc-cc
Q 038416          152 IVIINP-GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPG-WR  228 (387)
Q Consensus       152 v~l~~p-~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g-~r  228 (387)
                      .++..| +...|.. +|++.++++.++|++||+++|+||++.+|...|..+..-..++....   |.+++|.+ .+| ++
T Consensus       223 avi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PD---ivt~gK~l-~gG~~P  298 (466)
T PRK07036        223 AFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQPD---IITFAKGL-TSGYQP  298 (466)
T ss_pred             EEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCCCC---EEEEcccc-ccCccc
Confidence            555555 6666775 56777999999999999999999999988655543222111222212   34678996 456 58


Q ss_pred             eEEEEeeCCCCcccchhHHHHHHhh-------h-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc
Q 038416          229 LGWLVTSDPNGILQNSGFVDSIKGC-------L-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE  300 (387)
Q Consensus       229 ~G~i~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  300 (387)
                      +|.+++++        ++.+.+...       . ..+++.++++.+++.+.|+...++.   ..+..+++.+++++.|+.
T Consensus       299 i~av~~~~--------~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~~---l~~~~~~~g~~l~~~L~~  367 (466)
T PRK07036        299 LGAVIISE--------RLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREG---LCEHVREVGPYFEERLAS  367 (466)
T ss_pred             cEEEEEcH--------HHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHH
Confidence            99999976        677766421       1 1356778999888888887643322   333344444444444443


Q ss_pred             ---CCCCCCCCCCCceEEEEEecCcccc-cCC-C-c---HHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhH
Q 038416          301 ---IPCITCPVKPQGAMFVMVKLNVSML-EDI-G-D---DLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATL  369 (387)
Q Consensus       301 ---~~~~~~~~~~~~g~~~~~~~~~~~~-~~~-~-~---~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~  369 (387)
                         +|.+..  ...-|.++.+.+..... .+. . +   ...+.. .+.++||.+.+.     .+.+|+++.  ++++++
T Consensus       368 l~~~~~v~~--vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Gvl~~~~-----~~~~~l~Ppl~it~~~i  439 (466)
T PRK07036        368 LRELPLVGD--VRGDHLMACVECVADKGSKALLPEDIAIGQRIDR-HCQERGLLVRPL-----EHLCVLSPPLIITRAQI  439 (466)
T ss_pred             hccCCCEEE--EEeeceEEEEEEccCccccCCCCchhHHHHHHHH-HHHHCCcEEeec-----CCEEEEeCCCcCCHHHH
Confidence               332221  22346666776643111 000 0 1   123334 456779999774     256889874  599999


Q ss_pred             HHHHHHHHHHHHHhh
Q 038416          370 EDGLERIKAFCQRHA  384 (387)
Q Consensus       370 ~~~~~~l~~~~~~~~  384 (387)
                      +++++++.++++++.
T Consensus       440 d~~~~~l~~al~~~~  454 (466)
T PRK07036        440 DEIVAILRAAIEETA  454 (466)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999887763

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.77  E-value=5.4e-16  Score=145.55  Aligned_cols=323  Identities=15%  Similarity=0.085  Sum_probs=190.2

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc--CCCCeEEEc
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA--RPGANILIP  103 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~g~~vl~~  103 (387)
                      .+|.+.+++++++.......+.     .+.+..+++.+.+..+   ..+.+++++++++|++.+++...  ....+|+..
T Consensus        70 ~~p~v~~ai~~q~~~~~~~~~~-----~~~~~~la~~l~~~~p---~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~  141 (428)
T PRK12389         70 AHPHITKAITEAAENGVLYGTP-----TELEIEFAKMLKEAIP---SLEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKF  141 (428)
T ss_pred             CCHHHHHHHHHHHHhCCccCCC-----CHHHHHHHHHHHHhCC---CCcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEE
Confidence            5688999999998864321221     2334555555544322   24689999999999999998754  223688888


Q ss_pred             CCCCcchHHHhhccCCCceee--------eeccCCCCC-c---cCChhhHHHhhcc--CceEEEEeCC-CCCcccc-CCH
Q 038416          104 RPGYPLYEIHAAGSNNNLEAR--------HYDLLPEKR-W---EVDLDGVEALADE--NTVAIVIINP-GNPCGNV-FSY  167 (387)
Q Consensus       104 ~p~~~~~~~~~~~~~~g~~~~--------~~~~~~~~~-~---~~~~~~l~~~~~~--~~~~v~l~~p-~nptG~~-~~~  167 (387)
                      ..+|++....+. +..+....        .++.....+ .   .-|++.+++.++.  +..+.++..| ++..|.. .|+
T Consensus       142 ~~~yHG~t~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~  220 (428)
T PRK12389        142 AGCYHGHSDLVL-VAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKP  220 (428)
T ss_pred             CCCcCCChHHHH-HhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCH
Confidence            999988654333 01111100        000000000 0   1167888887753  2334455555 6667875 467


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCc-cccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYV-PMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      +.++++.++|++||+++|+||++.+|.. +.... ......+|     +.+++|.+ .+|+++|.+++++        ++
T Consensus       221 ~yl~~l~~lc~~~g~llI~DEV~tG~Rt-~~~~a~~~~gv~PD-----ivt~gK~l-ggG~Pi~av~~~~--------~i  285 (428)
T PRK12389        221 GFLEAVNELAHEAGALVIYDEVITAFRF-MYGGAQDLLGVEPD-----LTALGKII-GGGLPIGAYGGRK--------DI  285 (428)
T ss_pred             HHHHHHHHHHHHcCCEEEEEcccccccc-CcchhhHHhCCCCC-----eeeechhh-cCCCceeEEeEHH--------HH
Confidence            7799999999999999999999998732 21111 11122222     34788996 5679999998875        67


Q ss_pred             HHHHHhh----hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc----CCCCCCCCCCCceEEEEE
Q 038416          247 VDSIKGC----LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE----IPCITCPVKPQGAMFVMV  318 (387)
Q Consensus       247 ~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~g~~~~~  318 (387)
                      .+.+...    ...+++.++++.+++.+.|+...++.   ..++++++-+++++.|++    +|.+..+ ....|+ +.+
T Consensus       286 ~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~~~v-~r~~g~-~gi  360 (428)
T PRK12389        286 MEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEG---VYEKLDRLGAMLEEGILEAAEKHGITITI-NRLKGA-LTV  360 (428)
T ss_pred             HhhhccCCCcccccCCccCHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHhCCCCEEE-EecCcE-EEE
Confidence            7766421    12356788888888888887643322   333444444444444443    4321111 122333 233


Q ss_pred             ecCccccc--------CCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHH
Q 038416          319 KLNVSMLE--------DIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       319 ~~~~~~~~--------~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~  382 (387)
                      .+......        +......+.. .+.++||.+.+..    .+.+.+++.+++++++++++.+.+++++
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~Gv~~~~~~----~~~~~~~l~~t~e~id~~~~~l~~~l~~  427 (428)
T PRK12389        361 YFTDEKVTNYDQAERSDGEAFGKFFK-LMLNQGINLAPSK----YEAWFLTTAHTEEDIEETLEAVDRAFAQ  427 (428)
T ss_pred             EEeCCCCCChhhhcccCHHHHHHHHH-HHHHCCcEeecCC----CCCeeecCCCCHHHHHHHHHHHHHHHHh
Confidence            33221100        0001123444 4466799998752    2335666678999999999999998865

>PRK06917 hypothetical protein; Provisional

Probab=99.77  E-value=1.6e-15  Score=142.68  Aligned_cols=352  Identities=14%  Similarity=0.097  Sum_probs=205.0

Q ss_pred             ccccCCCCCCCCCCCCCC-CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLS-DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI   86 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~   86 (387)
                      ..+++..-|.-..  .++ .+|.+.+++++++..... .+.. .-..+.+..+++.+....+  ...+.+++++++++|+
T Consensus        31 ~~ylD~~~g~~~~--~lGh~hp~v~~Ai~~ql~~~~~-~~~~-~~~~~~~~~lae~L~~~~p--~~~~~v~f~~sGsEAv  104 (447)
T PRK06917         31 NKYFDGSSGAVTA--GIGHGVKEIADAIKEQAEEVSF-VYRS-QFTSEPAEKLAKKLSDLSP--GDLNWSFFVNSGSEAN  104 (447)
T ss_pred             CEEEECchhHHhc--cCCCCCHHHHHHHHHHHhhCcC-cccc-ccCCHHHHHHHHHHHHhCC--CCCCEEEEeCChHHHH
Confidence            3456654443211  233 489999999999886322 1111 1112444555555554332  2235799999999999


Q ss_pred             HHHHHhhcC-------CC-CeEEEcCCCCcchHHHhhccCCCc------------eeeeeccCCCCC--ccC--------
Q 038416           87 EISLSVLAR-------PG-ANILIPRPGYPLYEIHAAGSNNNL------------EARHYDLLPEKR--WEV--------  136 (387)
Q Consensus        87 ~~~~~~l~~-------~g-~~vl~~~p~~~~~~~~~~~~~~g~------------~~~~~~~~~~~~--~~~--------  136 (387)
                      +.+++...+       +| .+|+....+|+++...+. +..+.            .+..++.+....  +..        
T Consensus       105 e~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~al-s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  183 (447)
T PRK06917        105 ETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGAL-SMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLA  183 (447)
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHH-HhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHHH
Confidence            999998621       23 679999999998654433 01111            111112111000  000        


Q ss_pred             ChhhHHHhhcc---CceEEEEeCC-CC-Cccc-cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCC
Q 038416          137 DLDGVEALADE---NTVAIVIINP-GN-PCGN-VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSI  209 (387)
Q Consensus       137 ~~~~l~~~~~~---~~~~v~l~~p-~n-ptG~-~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~  209 (387)
                      +++.+++.++.   +..+.++..| +. ..|. .+|++.++++.++|++||+++|+||++.+|...|..+.. .....+|
T Consensus       184 ~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PD  263 (447)
T PRK06917        184 CATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPD  263 (447)
T ss_pred             HHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCCCC
Confidence            23456666642   2345566666 43 3455 467888999999999999999999999987655543321 1122232


Q ss_pred             ccEEEEecCccccccccc-ceEEEEeeCCCCcccchhHHHHHHhh----h-hccCCcchHHHHHHHHHhhhccHHHHHHH
Q 038416          210 VPVITLGSISKRWIVPGW-RLGWLVTSDPNGILQNSGFVDSIKGC----L-NAASHPVTFIQAAVPRIVDETNEAFFAKI  283 (387)
Q Consensus       210 ~~~~~i~s~sK~~~~~g~-r~G~i~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  283 (387)
                           +.+++|.+ ..|+ ++|.+++++        ++.+.+...    . ..+++.++++.+++.+.|+...++.   .
T Consensus       264 -----i~~~gK~l-~~G~~Pi~a~~~~~--------~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~---l  326 (447)
T PRK06917        264 -----IMTLGKGL-GAGYTPIAATVVSD--------RVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKHN---L  326 (447)
T ss_pred             -----EEEeeehh-ccCCcceEEEEEcH--------HHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHCC---H
Confidence                 34678995 4564 899999976        676666431    1 2356778888888888887543322   2


Q ss_pred             HHHHHHHHHHHHHHhhc----CCCCCCCCCCCceEEEEEecCcccc--cCCCc----HHHHHHHHHHhcCeEEEcCCc-c
Q 038416          284 IGLLKETADICYERIKE----IPCITCPVKPQGAMFVMVKLNVSML--EDIGD----DLEFCLKLAKEESVIILPGRT-V  352 (387)
Q Consensus       284 ~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~----~~~~~~~ll~~~gi~v~~g~~-~  352 (387)
                      .+++.++-+++++.|++    .|.+..  ...-|.++.+.+.....  .....    ...+... +.++||.+.+... .
T Consensus       327 ~~~~~~~g~~l~~~L~~l~~~~~~i~~--vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Gvl~~~~~~~~  403 (447)
T PRK06917        327 PEKAAEKGEYLIKGLQKVQQQSTIIGD--VRGKGLLIGVEFVADKKTKQPFSKSQAVASELISV-AAKNGLLLYPAVAGQ  403 (447)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCEEE--EeecceEEEEEEeccCCcCCCCcchhHHHHHHHHH-HHhCCcEEEeccccc
Confidence            33344444444444443    432221  23446666666632100  00001    2234444 4667999987421 0


Q ss_pred             -C-CCCeEEEEee--CChHhHHHHHHHHHHHHHHhhhc
Q 038416          353 -G-MKNWLRIAFA--AEPATLEDGLERIKAFCQRHAKK  386 (387)
Q Consensus       353 -~-~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~~~  386 (387)
                       + ..+.+|+++.  +++++++.+++++.++++++.++
T Consensus       404 ~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~~  441 (447)
T PRK06917        404 DGKEGDAVIIAPPMTITYSELDELLSIFAKSVEEMMQK  441 (447)
T ss_pred             CCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHHHHh
Confidence             0 1468999985  79999999999999999887543

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.77  E-value=6.5e-16  Score=145.89  Aligned_cols=330  Identities=14%  Similarity=0.140  Sum_probs=196.1

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC-------CC-
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR-------PG-   97 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-------~g-   97 (387)
                      .+|.+.+++++++.+-..  ........+.+..+++.+....  +..-+.+++++++++|++.+++....       +| 
T Consensus        73 ~~p~v~~Ai~~ql~~l~~--~~~~~~~~~~~~~lae~L~~~~--p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr  148 (460)
T PRK06916         73 QVPELDEAIREQLNKIAH--STLLGLANVPSILLAEKLIEVV--PEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKK  148 (460)
T ss_pred             CCHHHHHHHHHHHHhCCC--ccccccCCHHHHHHHHHHHHhC--CCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCC
Confidence            678899999999886211  1110111233445555554432  22236899999999999999987542       33 


Q ss_pred             CeEEEcCCCCcchHHHhhccCCCc------------eeeeeccCCCC--Ccc--------CChhhHHHhhcc--CceEEE
Q 038416           98 ANILIPRPGYPLYEIHAAGSNNNL------------EARHYDLLPEK--RWE--------VDLDGVEALADE--NTVAIV  153 (387)
Q Consensus        98 ~~vl~~~p~~~~~~~~~~~~~~g~------------~~~~~~~~~~~--~~~--------~~~~~l~~~~~~--~~~~v~  153 (387)
                      .+|+....+|++....+. +..+.            .+..+|.+...  .+.        .+++.+++.++.  +..+.+
T Consensus       149 ~~ii~~~~~YHG~t~~al-s~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAv  227 (460)
T PRK06916        149 QRFVTLKNAYHGDTIGAV-SVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKHEEIAAI  227 (460)
T ss_pred             cEEEEECCcCCcccHHhH-hccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence            689999999988654333 01121            11222221100  001        134556666642  344555


Q ss_pred             EeCC--CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccc-cce
Q 038416          154 IINP--GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPG-WRL  229 (387)
Q Consensus       154 l~~p--~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g-~r~  229 (387)
                      +..|  +...|.. +|++.++++.++|++||+++|+||++.++...|..+. ...++-...   |.+++|.++ +| +++
T Consensus       228 i~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a-~~~~gv~PD---iv~~gK~l~-gG~~Pi  302 (460)
T PRK06916        228 IVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFA-CEHENVTPD---IMTAGKGLT-GGYLPI  302 (460)
T ss_pred             EEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhhH-HHhcCCCCC---eeeeehhhh-cCcccc
Confidence            5555  6666775 6888899999999999999999999998765554322 112222222   335789964 56 599


Q ss_pred             EEEEeeCCCCcccchhHHHHHHh-------h-hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc-
Q 038416          230 GWLVTSDPNGILQNSGFVDSIKG-------C-LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE-  300 (387)
Q Consensus       230 G~i~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-  300 (387)
                      |.+++++        ++.+.+..       . ...+++.++++..++.+.|+...++.   ..++++++-+++.+.|++ 
T Consensus       303 ~av~~~~--------ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~---l~~~~~~~g~~l~~~l~~l  371 (460)
T PRK06916        303 AITVTTD--------EIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEKTN---LIEQVARKTEYVATQLEDL  371 (460)
T ss_pred             ceeeecH--------HHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHh
Confidence            9999976        66665532       1 12356678888888888776543322   334444444455555544 


Q ss_pred             --CCCCCCCCCCCceEEEEEecCcccc-c-CCC---c-HHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHH
Q 038416          301 --IPCITCPVKPQGAMFVMVKLNVSML-E-DIG---D-DLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLE  370 (387)
Q Consensus       301 --~~~~~~~~~~~~g~~~~~~~~~~~~-~-~~~---~-~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~  370 (387)
                        .+.+..  ...-|.++-+.+..... . ...   . ...+... +.++||.+.+.     .+.+|+.+  .+++++++
T Consensus       372 ~~~~~v~~--vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~-~~~~Gvl~~~~-----g~~l~~~Ppl~it~~~id  443 (460)
T PRK06916        372 FALKHVGD--IRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKR-SRELGMLTRPL-----GNTIVFMPPLASTIDELD  443 (460)
T ss_pred             hcCCCeEE--eecCCceeeEEeecccccccCCCchhhHHHHHHHH-HHHCCeEEEec-----CCEEEEeCCcccCHHHHH
Confidence              332221  22335565555532110 0 000   1 1234444 46679999874     25788886  46899999


Q ss_pred             HHHHHHHHHHHHhh
Q 038416          371 DGLERIKAFCQRHA  384 (387)
Q Consensus       371 ~~~~~l~~~~~~~~  384 (387)
                      +++++|.++++++-
T Consensus       444 ~~~~~l~~~l~~~~  457 (460)
T PRK06916        444 EMLRILYKAISDVT  457 (460)
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999998753

>PRK04311 selenocysteine synthase; Provisional

Probab=99.77  E-value=1.2e-15  Score=142.69  Aligned_cols=321  Identities=15%  Similarity=0.071  Sum_probs=196.5

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCC-----CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCe
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSP-----TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGAN   99 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~-----~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~   99 (387)
                      +.++.+.+++.+.+.......|..     ..-+..+++.+++++        +.++.+++++++.|+..++.++ .+||+
T Consensus        97 ~l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~--------Gae~a~vv~sgtaAl~l~l~~l-~~Gde  167 (464)
T PRK04311         97 LLSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALT--------GAEDALVVNNNAAAVLLALNAL-AAGKE  167 (464)
T ss_pred             CCCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHh--------CCCeEEEECCHHHHHHHHHHHh-CCCCE
Confidence            588999999999886532112211     111357788888887        3356788888999999988665 78999


Q ss_pred             EEEcCCCCcc------hHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCC--cc--ccCCHHH
Q 038416          100 ILIPRPGYPL------YEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNP--CG--NVFSYQH  169 (387)
Q Consensus       100 vl~~~p~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~np--tG--~~~~~~~  169 (387)
                      |+++...+..      +...+.  ..|++++.++...    ..++++++++++++|++|++++++|+  +|  ...+   
T Consensus       168 VIvs~~e~~~~ggs~~i~~~~~--~~G~~l~~v~~~~----~t~~~dle~aI~~~TklV~~vh~sN~~i~G~~~~~d---  238 (464)
T PRK04311        168 VIVSRGELVEIGGAFRIPDVMR--QAGARLVEVGTTN----RTHLRDYEQAINENTALLLKVHTSNYRIEGFTKEVS---  238 (464)
T ss_pred             EEEcchhhhhcCcchhhHHHHH--HCCcEEEEECCCC----CCCHHHHHHhcCccCeEEEEEcCCCccccccCCcCC---
Confidence            9998765441      223456  7899988886532    34789999999999999999999998  45  3334   


Q ss_pred             HHHHHHHHHhcCcEEeecccccccc----cCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchh
Q 038416          170 LQKIARTARNLGIIVIADEVYNHLA----FGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSG  245 (387)
Q Consensus       170 ~~~l~~~~~~~~~~li~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~  245 (387)
                      +++|+++|++||+++|+|..++.+.    +.-.....+......+-.++++|.+|.++.+  ..|++++++        +
T Consensus       239 l~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp--~~G~i~g~~--------~  308 (464)
T PRK04311        239 LAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGP--QAGIIVGKK--------E  308 (464)
T ss_pred             HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCC--ceEEEEEcH--------H
Confidence            8999999999999999999654321    1100011111111112348899999996544  589998875        6


Q ss_pred             HHHHHHhhh-hccCCcchHHHHHHHHHhhhc---c--------HHHHHHHHHHHHHHHHHHHHHhhcCC--CC--CCCCC
Q 038416          246 FVDSIKGCL-NAASHPVTFIQAAVPRIVDET---N--------EAFFAKIIGLLKETADICYERIKEIP--CI--TCPVK  309 (387)
Q Consensus       246 ~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~---~--------~~~~~~~~~~~~~~~~~~~~~l~~~~--~~--~~~~~  309 (387)
                      +++++++.. ............++.+.+...   .        ...+....+++.++++.+.+.|+..+  ++  ++...
T Consensus       309 li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~  388 (464)
T PRK04311        309 LIARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGAAFAVEVVPS  388 (464)
T ss_pred             HHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEc
Confidence            777776421 111222333333444333311   1        12244555777778888888887653  11  11100


Q ss_pred             ---CCceE-------EEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe-eCChHhHHHHHHHHHH
Q 038416          310 ---PQGAM-------FVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF-AAEPATLEDGLERIKA  378 (387)
Q Consensus       310 ---~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~-~~~~e~~~~~~~~l~~  378 (387)
                         ..+|.       ...+.+....    .+..++...| ++....+..-   -..+.+.+.+ +..++|++.++++|++
T Consensus       389 ~~~~gggs~p~~~~~~~~v~~~~~~----~~~~~l~~~l-r~~~~~i~~r---~~~~~~~ld~r~~~~~~~~~~~~~~~~  460 (464)
T PRK04311        389 FSQVGGGSLPVDRLPSAAVTLTPKD----RSLEALAARL-RLLPPPVIGR---IEDGRLLLDLRTLEEEDEERLAAALLE  460 (464)
T ss_pred             cCccCCCCCcCCCCCeEEEEEeCCC----CCHHHHHHHH-hcCCCCEEEE---EECCEEEEEeCcCCHHHHHHHHHHHHH
Confidence               01111       1122222111    1344555544 6644433331   1257778888 5688999999999887


Q ss_pred             HHH
Q 038416          379 FCQ  381 (387)
Q Consensus       379 ~~~  381 (387)
                      ++.
T Consensus       461 ~~~  463 (464)
T PRK04311        461 ALN  463 (464)
T ss_pred             Hhh
Confidence            753

>PRK07480 putative aminotransferase; Validated

Probab=99.77  E-value=6.4e-16  Score=145.60  Aligned_cols=334  Identities=16%  Similarity=0.121  Sum_probs=194.2

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC-------CC-
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR-------PG-   97 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-------~g-   97 (387)
                      .+|.+.+++++++....... .......+.+..+++.+....+  ...+.+++++++++|++.+++....       +| 
T Consensus        67 ~~p~v~~Ai~~q~~~~~~~~-~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r  143 (456)
T PRK07480         67 GRKELADAAARQMRELPYYN-TFFKTTHPPAIELAAKLAEVAP--PGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQK  143 (456)
T ss_pred             CCHHHHHHHHHHHHhcCCcc-cccccCCHHHHHHHHHHHHhCC--CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCC
Confidence            47889999999987532111 0001123445555555544332  2346899999999999999987532       23 


Q ss_pred             CeEEEcCCCCcchHHHhhccCCCce------------eeeeccCC--CCCccCC--------hhhHHHhhc---cCceEE
Q 038416           98 ANILIPRPGYPLYEIHAAGSNNNLE------------ARHYDLLP--EKRWEVD--------LDGVEALAD---ENTVAI  152 (387)
Q Consensus        98 ~~vl~~~p~~~~~~~~~~~~~~g~~------------~~~~~~~~--~~~~~~~--------~~~l~~~~~---~~~~~v  152 (387)
                      .+|+....+|++...... +..|..            +..++.+.  ...+..+        ++.+++.+.   ++..+.
T Consensus       144 ~~ii~~~~~yHG~tl~a~-s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAA  222 (456)
T PRK07480        144 KVIISRKNGYHGSTVAGA-SLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILELGADNVAA  222 (456)
T ss_pred             cEEEEECCCcCCcchhhh-hccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence            578888888887543222 011111            11111110  0000011        245554442   233444


Q ss_pred             EEeCC-CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccc-cce
Q 038416          153 VIINP-GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPG-WRL  229 (387)
Q Consensus       153 ~l~~p-~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g-~r~  229 (387)
                      ++..| +...|.. .|.+.++++.++|++||+++|+||++.+|...|..+.. ..++....   +.+++|.++ +| +++
T Consensus       223 vi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~-~~~gv~PD---iv~~gK~l~-gG~~Pi  297 (456)
T PRK07480        223 FIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGS-QHFGIKPD---LMTIAKGLT-SGYIPM  297 (456)
T ss_pred             EEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhh-hhcCCCCC---eeeeehhhc-cCCccc
Confidence            55555 6566775 56677999999999999999999999988655543221 12222112   346789954 56 489


Q ss_pred             EEEEeeCCCCcccchhHHHHHHh----h-hhccCCcchHHHHHHHHHhhhccHHHHHHHH--HHHHHHHHHHHHHhhcCC
Q 038416          230 GWLVTSDPNGILQNSGFVDSIKG----C-LNAASHPVTFIQAAVPRIVDETNEAFFAKII--GLLKETADICYERIKEIP  302 (387)
Q Consensus       230 G~i~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~  302 (387)
                      |.+++++        ++.+.+..    . ...+++.++++.+++.+.|+...++.+.+..  +.-...++.+.+ +++.|
T Consensus       298 ~av~~~~--------~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~~~l~~-l~~~~  368 (456)
T PRK07480        298 GAVGVGD--------RVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRDEGIVERVRDDTGPYLQKRLRE-LADHP  368 (456)
T ss_pred             eEEEEcH--------HHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-hhcCC
Confidence            9999976        67666631    1 1246778899999998888764433332222  222333333333 34443


Q ss_pred             CCCCCCCCCceEEEEEecCcccc--cCCCc---HHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeC--ChHhHHHHHHH
Q 038416          303 CITCPVKPQGAMFVMVKLNVSML--EDIGD---DLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAA--EPATLEDGLER  375 (387)
Q Consensus       303 ~~~~~~~~~~g~~~~~~~~~~~~--~~~~~---~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~--~~e~~~~~~~~  375 (387)
                      .+..+  ..-|.++-+.+.....  ..+.+   ....+...+.++||.+.+.     .+.+|+++..  +++++++++++
T Consensus       369 ~i~~v--rG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~-----~~~l~~~Ppl~it~~eid~~~~~  441 (456)
T PRK07480        369 LVGEV--RGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCFANGLIMRAV-----GDRMIISPPLVITHAEIDELVEK  441 (456)
T ss_pred             CeeeE--EeecceEEEEEeccccccccCcchhhHHHHHHHHHHHCCcEEeec-----CCEEEEECCCCCCHHHHHHHHHH
Confidence            22212  3446666666632110  00101   1123333456679998763     3679999954  89999999999


Q ss_pred             HHHHHHHhh
Q 038416          376 IKAFCQRHA  384 (387)
Q Consensus       376 l~~~~~~~~  384 (387)
                      |.++++++.
T Consensus       442 l~~al~~~~  450 (456)
T PRK07480        442 ARKALDATA  450 (456)
T ss_pred             HHHHHHHHH
Confidence            999998764

>PRK07481 hypothetical protein; Provisional

Probab=99.76  E-value=3.7e-15  Score=140.48  Aligned_cols=334  Identities=14%  Similarity=0.102  Sum_probs=192.7

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC-------CC-
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR-------PG-   97 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-------~g-   97 (387)
                      .+|.+.+|+++++......... .....+.+..+++.+....+ +..-+.+++++++++|++.+++....       +| 
T Consensus        59 ~~p~v~~Ai~~ql~~~~~~~~~-~~~~~~~~~~lae~L~~~~~-~~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r  136 (449)
T PRK07481         59 NREEVKEAIVRQLDELEYYSTF-DGTTHPRAIELSYELIDMFA-PEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPER  136 (449)
T ss_pred             CCHHHHHHHHHHHHhccceecc-cccCCHHHHHHHHHHHHhcC-CCCCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCC
Confidence            5678899999998763211100 01122444555555554332 11235899999999999999997541       23 


Q ss_pred             CeEEEcCCCCcchHHHhhccCCCc------------eeeeeccCCCC--Ccc-CChhh--------HHHhhc---cCceE
Q 038416           98 ANILIPRPGYPLYEIHAAGSNNNL------------EARHYDLLPEK--RWE-VDLDG--------VEALAD---ENTVA  151 (387)
Q Consensus        98 ~~vl~~~p~~~~~~~~~~~~~~g~------------~~~~~~~~~~~--~~~-~~~~~--------l~~~~~---~~~~~  151 (387)
                      .+|+....+|++....+. +..+.            .+..++.+...  .+. .|+++        +++.+.   ++..+
T Consensus       137 ~~ii~~~~~yHG~t~ga~-s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iA  215 (449)
T PRK07481        137 TKFISLKQGYHGTHFGGA-SVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIA  215 (449)
T ss_pred             cEEEEECCCcCCcchhhh-ccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence            579999999998654333 01111            11222211000  011 13333        333332   23345


Q ss_pred             EEEeCC-CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccc-cc
Q 038416          152 IVIINP-GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPG-WR  228 (387)
Q Consensus       152 v~l~~p-~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g-~r  228 (387)
                      .++..| +...|.. +|++.++++.++|++||+++|.||++.+|...|..+.. ..++-...   |-+++|.+ .+| ++
T Consensus       216 AviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~-~~~gv~PD---iv~~gKgl-~gG~~P  290 (449)
T PRK07481        216 AFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGS-RGWGVKPD---IMCLAKGI-TSGYVP  290 (449)
T ss_pred             EEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHh-hhcCCCCC---EEEEeecc-cCCCcC
Confidence            555566 6566775 57777999999999999999999999998665543221 12222222   33567995 456 59


Q ss_pred             eEEEEeeCCCCcccchhHHHHHHhh--------hhccCCcchHHHHHHHHHhhhccHHHH-HHHHHHHHHHHHHHHHHhh
Q 038416          229 LGWLVTSDPNGILQNSGFVDSIKGC--------LNAASHPVTFIQAAVPRIVDETNEAFF-AKIIGLLKETADICYERIK  299 (387)
Q Consensus       229 ~G~i~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~l~  299 (387)
                      +|.+++++        ++.+.+...        ...+++.++++.+++.+.|+...++.+ ++..+.-...++.+.+..+
T Consensus       291 i~av~~~~--------~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~  362 (449)
T PRK07481        291 LGATMVNA--------RIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDLPANAAKRGAYLLEGLQPLKE  362 (449)
T ss_pred             ceEEEEcH--------HHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            99999976        676666431        124567788888888888876443332 2222222233333332222


Q ss_pred             cCCCCCCCCCCCceEEEEEecCcccc-cCCC----c-HHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHH
Q 038416          300 EIPCITCPVKPQGAMFVMVKLNVSML-EDIG----D-DLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLED  371 (387)
Q Consensus       300 ~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~----~-~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~  371 (387)
                      ++|.+..  ...-|.++.+.+..... ....    . ...+... +.++|+.+.+..     +.+|+++.  .+++++++
T Consensus       363 ~~~~i~~--vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~Gvl~~~~g-----~~i~l~Ppl~it~~eid~  434 (449)
T PRK07481        363 RFELVGD--VRGKGLMLALDLVADKATREPIDPSKGYANAVADV-ARENGVLVRPSG-----TKIILSPPLVIQREDVDR  434 (449)
T ss_pred             cCCCeEE--EeecceEEEEEecccccccCCCCchhHHHHHHHHH-HHhCCeEEEecC-----CEEEEECCCCCCHHHHHH
Confidence            3432221  22346666666632110 0000    1 1233343 466799998742     45899974  58999999


Q ss_pred             HHHHHHHHHHHh
Q 038416          372 GLERIKAFCQRH  383 (387)
Q Consensus       372 ~~~~l~~~~~~~  383 (387)
                      +++.+.++++++
T Consensus       435 ~~~~l~~~l~~~  446 (449)
T PRK07481        435 IVDALDAGLSAV  446 (449)
T ss_pred             HHHHHHHHHHhc
Confidence            999999999875

>PRK06149 hypothetical protein; Provisional

Probab=99.76  E-value=2e-15  Score=154.63  Aligned_cols=344  Identities=15%  Similarity=0.126  Sum_probs=198.2

Q ss_pred             ccccCCCCCCCCCCCCCC-CcHHHHHHHHHHhcCCCCCC-CCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHH
Q 038416            8 ETRHSPWPRRPLGVSLLS-DSTVAEDAVVDALRTAHYNC-YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQA   85 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~~-y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a   85 (387)
                      +.|.+..-|.    ..++ .+|.+.+++++++....... +. .....++.+.+++++      +...+.++++++|++|
T Consensus       585 ~~ylD~~~~~----~~lGh~hp~v~~Ai~~q~~~l~~~~~~~-~~~~~elae~L~~~~------p~~~~~v~f~~SGsEA  653 (972)
T PRK06149        585 RSYLDMVNNV----TVLGHGHPRLAAAAARQWSLLNTNSRFH-YAAVAEFSERLAALA------PDGLDTVFLVNSGSEA  653 (972)
T ss_pred             CEEEECCCCc----cccCCCCHHHHHHHHHHHHhcccccccc-CHHHHHHHHHHHHhC------CCCcCEEEEeCCchHH
Confidence            3455554332    2466 78999999999987532211 21 112234444444443      2234689999999999


Q ss_pred             HHHHHHhhc--CCCCeEEEcCCCCcchHHHhh-c--cCC-Cc--------eeeeeccCCC--CCcc-CC-----hhhHHH
Q 038416           86 IEISLSVLA--RPGANILIPRPGYPLYEIHAA-G--SNN-NL--------EARHYDLLPE--KRWE-VD-----LDGVEA  143 (387)
Q Consensus        86 ~~~~~~~l~--~~g~~vl~~~p~~~~~~~~~~-~--~~~-g~--------~~~~~~~~~~--~~~~-~~-----~~~l~~  143 (387)
                      ++.+++...  ....+|+....+|++...... .  +.. +.        .+..++....  ..+. .+     .+.+++
T Consensus       654 ~e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~  733 (972)
T PRK06149        654 NDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVA  733 (972)
T ss_pred             HHHHHHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHH
Confidence            999998542  223678888888887542221 0  000 00        0122221110  0111 01     133333


Q ss_pred             hhc-----cCceEEEEeCC-CCCccc-cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEe
Q 038416          144 LAD-----ENTVAIVIINP-GNPCGN-VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLG  216 (387)
Q Consensus       144 ~~~-----~~~~~v~l~~p-~nptG~-~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  216 (387)
                      .++     .+..+.+++.| +...|. .+|++.++++.++|++||+++|+||++.+|+..|..+..+..++....   |-
T Consensus       734 ~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PD---iv  810 (972)
T PRK06149        734 QLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPD---II  810 (972)
T ss_pred             HHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCC---EE
Confidence            321     23445566666 444554 567778999999999999999999999988665543222222222222   33


Q ss_pred             cCcccccccccceEEEEeeCCCCcccchhHHHHHHh--hhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHH
Q 038416          217 SISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKG--CLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADIC  294 (387)
Q Consensus       217 s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  294 (387)
                      +++|.++ +|.++|.+++++        ++.+.+..  ....+++.++.+.+++.+.|+...++.+   .+..++.-+++
T Consensus       811 t~gK~lg-~G~Pl~av~~~~--------~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~~e~l---~~~~~~~G~~l  878 (972)
T PRK06149        811 TMAKGMG-NGHPLGAVITRR--------EIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLREEKL---QENARRVGDHL  878 (972)
T ss_pred             Eeccccc-CCeeeEEEEEcH--------HHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHH
Confidence            7889964 679999999976        67776653  1123457788888888888876443333   23333333344


Q ss_pred             HHHhh----cCCCCCCCCCCCceEEEEEecCccc---ccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CC
Q 038416          295 YERIK----EIPCITCPVKPQGAMFVMVKLNVSM---LEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AE  365 (387)
Q Consensus       295 ~~~l~----~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~  365 (387)
                      ++.|+    +.|.+..+  ..-|.++-+.+....   .+.......+...+ .++||.+.+...  ..+.+|+.+.  ++
T Consensus       879 ~~~L~~l~~~~~~i~~v--rG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l-~~~Gvl~~~~g~--~~~vl~~~Ppl~it  953 (972)
T PRK06149        879 KARLEALADRHPLIGAV--HGMGLYLGVELVRDRQTLEPATEETAAICDRL-LELGVIMQPTGD--HLNILKIKPPLCLD  953 (972)
T ss_pred             HHHHHHHHHhCCCeEEE--eecceEEEEEEecCcccCCCChHHHHHHHHHH-HhCCeEEeecCC--CCCEEEEECCCcCC
Confidence            44443    34433312  344666666652110   01000123444444 567999987421  1367999884  79


Q ss_pred             hHhHHHHHHHHHHHHHH
Q 038416          366 PATLEDGLERIKAFCQR  382 (387)
Q Consensus       366 ~e~~~~~~~~l~~~~~~  382 (387)
                      +++++.++++|.+++++
T Consensus       954 ~~~id~~~~~l~~~l~~  970 (972)
T PRK06149        954 RESADFFVDMLDRVLTE  970 (972)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999999875

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.76  E-value=2.5e-15  Score=141.81  Aligned_cols=353  Identities=14%  Similarity=0.072  Sum_probs=201.2

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCC-CCCEEEc-CChHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLS-PEDVYLT-LGCSQAI   86 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~-~~~i~~~-~g~~~a~   86 (387)
                      .+.|..-|.-.....+ .+|.+.+++++++.+.......  ....+.+..+++.+....+.... .+.++++ +++++|+
T Consensus        64 ~ylD~~~g~~~~~lGh-~~p~v~~Ai~~ql~~~~~~~~~--~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAv  140 (464)
T PRK06938         64 QFIDCLAGAGTLALGH-NHPVVIEAIQQVLADELPLHTL--DLTTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAV  140 (464)
T ss_pred             EEEEccCCccccccCC-CCHHHHHHHHHHHHhhhccccc--ccCCHHHHHHHHHHHHhCcccccccceEEEeCCCcHHHH
Confidence            4555544432222222 5778999999998643211111  11124444555555432221111 1357665 7899999


Q ss_pred             HHHHHhhc-CC-CCeEEEcCCCCcchHHHhhccCCCc------------eeeeeccCCCCC--cc--------CChhhHH
Q 038416           87 EISLSVLA-RP-GANILIPRPGYPLYEIHAAGSNNNL------------EARHYDLLPEKR--WE--------VDLDGVE  142 (387)
Q Consensus        87 ~~~~~~l~-~~-g~~vl~~~p~~~~~~~~~~~~~~g~------------~~~~~~~~~~~~--~~--------~~~~~l~  142 (387)
                      +.+++... .. ..+|+....+|++....+. +..+.            ++..++.+....  +.        .+++.++
T Consensus       141 e~AlklAr~~tgr~~ii~~~~~yHG~t~~al-s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~  219 (464)
T PRK06938        141 EAALKLVKTATGRSTVLSFQGGYHGMSQGAL-SLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLE  219 (464)
T ss_pred             HHHHHHHHHhhCCCeEEEECCccCCccHHHH-hhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHH
Confidence            99998764 22 3688988999988654433 01110            122233221100  00        1256677


Q ss_pred             Hhhcc-----CceEEEEeCC-CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEE
Q 038416          143 ALADE-----NTVAIVIINP-GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITL  215 (387)
Q Consensus       143 ~~~~~-----~~~~v~l~~p-~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i  215 (387)
                      +.+..     ...+.++..| +...|.. +|.+.++++.++|++||+++|.||++.+|...|..+. ...++....   |
T Consensus       220 ~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a-~e~~gv~PD---i  295 (464)
T PRK06938        220 NLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFA-FEHAGIIPD---V  295 (464)
T ss_pred             HHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHH-HHhcCCCCC---E
Confidence            77653     1345556666 5556775 5688899999999999999999999999875554222 112222222   3


Q ss_pred             ecCcccccccccceEEEEeeCCCCcccchhHHHHHHhh-hhccCCcchHHHHHHHHHhhhccHHHHHHHH-HHHHHHHHH
Q 038416          216 GSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGC-LNAASHPVTFIQAAVPRIVDETNEAFFAKII-GLLKETADI  293 (387)
Q Consensus       216 ~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~  293 (387)
                      .+++|.++ +|+++|.+++++        + ++.+... ...+++.++++.+++.+.|+...++.+.++. +.-...++.
T Consensus       296 v~~gKglg-gG~PlsAv~~~~--------~-~~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~  365 (464)
T PRK06938        296 VVLSKAIG-GSLPLAVVVYRE--------W-LDTWQPGAHAGTFRGNQMAMAAGSATLRYIKEHRLAEHAAAMGERLREH  365 (464)
T ss_pred             EEeecccc-CCCceEEEeehh--------H-hhccCCCCCCCCCCcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            35679964 679999999875        3 2333222 2246778899988888888765443333333 222233333


Q ss_pred             HHHHhhcCCCCCCCCCCCceEEEEEecCcccc-cC-------CCc-HHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--
Q 038416          294 CYERIKEIPCITCPVKPQGAMFVMVKLNVSML-ED-------IGD-DLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--  362 (387)
Q Consensus       294 ~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~-------~~~-~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--  362 (387)
                      +.+..+++|.+..  ...-|.++.+.+..... +.       ... ...+... +.++|+.+.++..  ..+.+|+.+  
T Consensus       366 L~~l~~~~~~i~~--VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Gll~~~~g~--~~~~l~~~Ppl  440 (464)
T PRK06938        366 LRQLQRDYPQLGD--VRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRE-CLRRGLILELGGR--HGSVVRFLPPL  440 (464)
T ss_pred             HHHHHHhCCCeee--eeccceEEEEEeccCcccccccccCCccHHHHHHHHHH-HHHCCeEEeecCC--CCCEEEEECCC
Confidence            3332233543321  23446676776632110 00       001 1233444 4567999887532  147899987  


Q ss_pred             eCChHhHHHHHHHHHHHHHHhh
Q 038416          363 AAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       363 ~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      .+++++++.+++++.+++++.-
T Consensus       441 ~it~~eid~~~~~l~~~l~~~~  462 (464)
T PRK06938        441 IITAEQIDEVAEIFAEAVAAAV  462 (464)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHh
Confidence            4689999999999999998754

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.75  E-value=7.5e-16  Score=140.35  Aligned_cols=312  Identities=14%  Similarity=0.034  Sum_probs=196.5

Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc-CCCCeEEEcCCCCc
Q 038416           30 AEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA-RPGANILIPRPGYP  108 (387)
Q Consensus        30 v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~g~~vl~~~p~~~  108 (387)
                      ..+++++.+-.  .+++++  ...++-+.+.+.+++.++.+.+.+-++++.|+|.++++++.+++ ++|++|++.. .|.
T Consensus        19 ~~~~~~~~~~~--~~HRs~--~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~FG   93 (374)
T TIGR01365        19 SIEELKNAPLG--RSHRSK--LGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-SFG   93 (374)
T ss_pred             hHHHHhhhhcc--cCcCCH--HHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-HHH
Confidence            66666654432  124443  44566666666666666533333346779999999999999998 5888888754 333


Q ss_pred             c-hH-HHhhccCCCce-eeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEe
Q 038416          109 L-YE-IHAAGSNNNLE-ARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVI  185 (387)
Q Consensus       109 ~-~~-~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li  185 (387)
                      . +. ++++  ..|.+ +..+..  +.+..+++++++.  +   +.|.+++....||+..|.   ++++..+  ++.++|
T Consensus        94 ~r~~~eia~--~~g~~~v~~l~~--~~g~~~~~~~ve~--~---~~v~~vhnETSTGv~npv---~~i~~~~--~~~lli  159 (374)
T TIGR01365        94 KGWVTDVTK--QLKLPDVRVLEA--EYGKLPDLKKVDF--K---NDVVFTWNGTTSGVRVPN---GDFIPAD--REGLTI  159 (374)
T ss_pred             HHHHHHHHH--hcCCCCcEEEcC--CCCCCCCHHHcCC--C---CCEEEecCCCchheeccc---ccccccc--CCCcEE
Confidence            2 34 7778  88984 676654  3455778888873  1   226688888899999884   4444322  489999


Q ss_pred             ecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHh-------------
Q 038416          186 ADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKG-------------  252 (387)
Q Consensus       186 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~-------------  252 (387)
                      +|.+.+..   +. +..+..     -.+++.|..|.+++|+ .+++++.++.        -+++...             
T Consensus       160 VDavSs~g---~~-~l~~d~-----iDv~~tgsQK~L~~pp-Gls~v~vs~~--------Al~~~~~~~~y~~~~~~~~~  221 (374)
T TIGR01365       160 CDATSAAF---AQ-DLDYHK-----LDVVTFSWQKVLGGEG-AHGMLILSPR--------AVARLESYTPAWPLPKIFRL  221 (374)
T ss_pred             EEccchhc---CC-CCChhH-----CcEEEEechhccCCCC-ceEEEEECHH--------HHHHHhhcCCCCCChhhhcc
Confidence            99999852   22 222322     2377889999987543 2677777652        2222110             


Q ss_pred             ----------h-hhccCCcchHHHHHHHHHhhhccH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC-CCc-eE-EEE
Q 038416          253 ----------C-LNAASHPVTFIQAAVPRIVDETNE-AFFAKIIGLLKETADICYERIKEIPCITCPVK-PQG-AM-FVM  317 (387)
Q Consensus       253 ----------~-~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~-g~-~~~  317 (387)
                                . .++.++++.+...++..+++...+ +.++.+.++++++++.+++.+++++.+..... +.. .+ ...
T Consensus       222 ~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~  301 (374)
T TIGR01365       222 TKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVC  301 (374)
T ss_pred             ccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEE
Confidence                      0 123345555566666666654334 36999999999999999999999943553421 211 21 233


Q ss_pred             EecCcccccCCC-c-----HHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHH
Q 038416          318 VKLNVSMLEDIG-D-----DLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAF  379 (387)
Q Consensus       318 ~~~~~~~~~~~~-~-----~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~  379 (387)
                      +.++.+...... +     ..++...+ +++||.+.+|..-..++.|||+.  ..+.++++.+++.|.=+
T Consensus       302 v~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~i~~G~~~~~~~~fRIg~~G~i~~~di~~l~~~l~~~  370 (374)
T TIGR01365       302 LKVVDPAIDALDEDAQADFAKELISTL-EKEGVAYDIGSYRDAPSGLRIWCGATVEKSDLECLCPWLDWA  370 (374)
T ss_pred             EEeCCccccccccchhhHHHHHHHHHH-HHCCEEEeccccccCCCceEEecCCcCCHHHHHHHHHHHHHH
Confidence            344332110000 1     34455544 67799999887655568999999  46899999999988543

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.75  E-value=1.5e-15  Score=142.22  Aligned_cols=323  Identities=15%  Similarity=0.105  Sum_probs=193.8

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC-------CC-
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR-------PG-   97 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-------~g-   97 (387)
                      .+|.+.+++++++...........  ..+....+++.+.+..  +..-+.+++++++++|++.+++....       +| 
T Consensus        62 ~~p~v~~ai~~~~~~~~~~~~~~~--~~~~~~~la~~l~~~~--~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r  137 (427)
T TIGR00508        62 NHPRLNAAAQKQIDKMSHVMFGGF--THKPAIELCQKLVKMT--PNALDCVFLADSGSVAVEVALKMALQYWQAKGEKNR  137 (427)
T ss_pred             CCHHHHHHHHHHHHhcCCcccccc--CCHHHHHHHHHHHhhC--CCCCCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCc
Confidence            678899999998875321111100  1122334444443322  22236899999999999999987541       23 


Q ss_pred             CeEEEcCCCCcchHHHhhccCCCce-------------eeeeccCCCCCc-----cCChhhHHHhhcc--CceEEEEeCC
Q 038416           98 ANILIPRPGYPLYEIHAAGSNNNLE-------------ARHYDLLPEKRW-----EVDLDGVEALADE--NTVAIVIINP  157 (387)
Q Consensus        98 ~~vl~~~p~~~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~-----~~~~~~l~~~~~~--~~~~v~l~~p  157 (387)
                      .+|+....+|++....+. +..+..             ...++.+ ...+     .-+++++++.+..  +..+.+++.|
T Consensus       138 ~~il~~~~~yHG~t~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~l~~~l~~~~~~vaavivEP  215 (427)
T TIGR00508       138 QKFLTIRSGYHGDTFGAM-SVCDPENSMHSLYKGYLPEQIFAPAP-QNRFDEEWNEEAITPLAKLMELHSDEIAAVILEP  215 (427)
T ss_pred             cEEEEEcCCcCCccHhhh-cccCCcccccccccccCCCCeEcCCC-CccccchhHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence            679999999987543333 011210             0111111 0101     0135666666642  3445566666


Q ss_pred             --CCCccc-cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCCccEEEEecCcccccccc-cceEEE
Q 038416          158 --GNPCGN-VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVITLGSISKRWIVPG-WRLGWL  232 (387)
Q Consensus       158 --~nptG~-~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~s~sK~~~~~g-~r~G~i  232 (387)
                        ++..|. .++.+.+++|.++|++||+++|+||++.+++..|..+.. ...+.++   ++  +++|.+ .+| .+++.+
T Consensus       216 v~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~pD---i~--~~gK~l-~gG~~p~~a~  289 (427)
T TIGR00508       216 IVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVVPD---IL--CVGKAL-TGGYMTLSAT  289 (427)
T ss_pred             hhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCCCC---EE--Eechhh-hcCcccceEE
Confidence              555565 457888999999999999999999999887666644322 2223332   33  479997 466 478888


Q ss_pred             EeeCCCCcccchhHHHHHHhh------hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 038416          233 VTSDPNGILQNSGFVDSIKGC------LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITC  306 (387)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  306 (387)
                      +.++        ++.+.+...      ...++..++++.+++.+.|+...++   +..++++++.+++++.|+++.....
T Consensus       290 ~~~~--------~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~l~~~~~  358 (427)
T TIGR00508       290 VTTD--------KVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLEG---EWQKQVSAIENQLKRELSPLRKNPV  358 (427)
T ss_pred             EEcH--------HHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            8865        677777542      1124456788888888777743322   2345666666666666665521110


Q ss_pred             C-CCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHH
Q 038416          307 P-VKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       307 ~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~  382 (387)
                      + .....|.++.+.+...     .+...+...+ .++||.+.+.     ...+|+++.  +++++++++++.+.+++++
T Consensus       359 i~~vrg~G~~~~i~~~~~-----~~~~~~~~~l-~~~Gv~~~~~-----~~~l~~~ppl~~t~~~id~~~~~l~~~l~~  426 (427)
T TIGR00508       359 VKDVRVLGAIGVVEMYKP-----VNVEELQKKF-VEQGVWIRPF-----GKLIYVMPPYIITTEQLQKLTAALIEALHE  426 (427)
T ss_pred             EEeEeccccEEEEEECCc-----cCHHHHHHHH-HHCCeEEEec-----CCEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence            1 0112255555555321     1234555555 5669999764     247999885  7899999999999998864

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK07483 hypothetical protein; Provisional

Probab=99.75  E-value=1.9e-15  Score=142.03  Aligned_cols=339  Identities=19%  Similarity=0.172  Sum_probs=197.3

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC-------CC-
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR-------PG-   97 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-------~g-   97 (387)
                      .+|.+.+++++++.+.......  ....+.+..+++.+....+  ...+.+++++++++|++.+++....       +| 
T Consensus        47 ~~p~v~~av~~ql~~~~~~~~~--~~~~~~~~~lae~L~~~~p--~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r  122 (443)
T PRK07483         47 SHPRVIAAIHAQIDRLAYAHTS--FFTTEPAEALADRLVAAAP--AGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQR  122 (443)
T ss_pred             CCHHHHHHHHHHHHhccCcccc--ccCCHHHHHHHHHHHHhCC--CCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCC
Confidence            6788999999998863211111  1113444556665554322  2336899999999999999987531       33 


Q ss_pred             CeEEEcCCCCcchHHHhhccCCCc------------eeeeeccCCCCCc---cCC--------hhhHHHhhc---cCceE
Q 038416           98 ANILIPRPGYPLYEIHAAGSNNNL------------EARHYDLLPEKRW---EVD--------LDGVEALAD---ENTVA  151 (387)
Q Consensus        98 ~~vl~~~p~~~~~~~~~~~~~~g~------------~~~~~~~~~~~~~---~~~--------~~~l~~~~~---~~~~~  151 (387)
                      .+|+....+|++...... +..+-            .+..++.....+.   ..+        ++++++++.   ++..+
T Consensus       123 ~~Ii~~~~~YHG~t~~a~-s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iA  201 (443)
T PRK07483        123 RHFIARRQSYHGNTLGAL-AIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRLADELEAKILELGPDTVA  201 (443)
T ss_pred             cEEEEECCCcCCcCHHHh-hhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCceE
Confidence            578888999987643332 01111            1112221100000   000        245665453   23345


Q ss_pred             EEEeCC-CC-Cccc-cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCccccccccc-
Q 038416          152 IVIINP-GN-PCGN-VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGW-  227 (387)
Q Consensus       152 v~l~~p-~n-ptG~-~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~-  227 (387)
                      .++..| +. ..|. .+|++.++++.++|++||+++|+||++.+|...|..+.. ..++....   |-+++|.+ ..|+ 
T Consensus       202 AvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~-~~~gv~PD---iv~~gK~l-~gG~~  276 (443)
T PRK07483        202 AFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFAC-EEDGVAPD---LVTIAKGL-GAGYQ  276 (443)
T ss_pred             EEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHH-hhcCCCCC---eeeehhhh-ccCcc
Confidence            555666 43 3465 567788999999999999999999999998765543221 11222212   33578995 5675 


Q ss_pred             ceEEEEeeCCCCcccchhHHHHHHhh-----hhccCCcchHHHHHHHHHhhhccHHHH-HHHHHHHHHHHHHHHHHhhcC
Q 038416          228 RLGWLVTSDPNGILQNSGFVDSIKGC-----LNAASHPVTFIQAAVPRIVDETNEAFF-AKIIGLLKETADICYERIKEI  301 (387)
Q Consensus       228 r~G~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~  301 (387)
                      ++|.+++++        ++.+.+...     ...+++.++++.+++.+.|+..+++.+ ++..+.-...++.+.+.++++
T Consensus       277 Pi~av~~~~--------~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~  348 (443)
T PRK07483        277 PIGAVLASD--------RIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAEDGLLANVRARGEQLRARLRERLGQH  348 (443)
T ss_pred             ccEEEEEcH--------HHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999976        666666431     124667889998888888876443332 222222233334443333445


Q ss_pred             CCCCCCCCCCceEEEEEecCccc---cc---CCCcHHHHHHHHHHhcCeEEEcCCcc--C-CCCeEEEEe--eCChHhHH
Q 038416          302 PCITCPVKPQGAMFVMVKLNVSM---LE---DIGDDLEFCLKLAKEESVIILPGRTV--G-MKNWLRIAF--AAEPATLE  370 (387)
Q Consensus       302 ~~~~~~~~~~~g~~~~~~~~~~~---~~---~~~~~~~~~~~ll~~~gi~v~~g~~~--~-~~~~~Ri~~--~~~~e~~~  370 (387)
                      |.+..  ...-|.++-+.+....   .+   .......+... +.++|+++.+....  + .++.+|+.+  ..++++++
T Consensus       349 ~~i~~--vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Gll~~~~~~~~~~~~~~~l~~~PpL~it~~eid  425 (443)
T PRK07483        349 PHVGD--IRGRGLFVGVELVADRATKAPFDPALKLHARIKRE-AMARGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQID  425 (443)
T ss_pred             CCeee--EeecccEEEEEEeecccccCCCCchhhHHHHHHHH-HHHCCcEEEecCccccCCCCCEEEEECCCCCCHHHHH
Confidence            43321  2344666666653211   00   00001234444 45679999764211  1 146899988  46899999


Q ss_pred             HHHHHHHHHHHHhhh
Q 038416          371 DGLERIKAFCQRHAK  385 (387)
Q Consensus       371 ~~~~~l~~~~~~~~~  385 (387)
                      +++++|.+++++...
T Consensus       426 ~~~~~l~~~l~~~~~  440 (443)
T PRK07483        426 EIVERLGDAIDAALA  440 (443)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999987654

>PRK06148 hypothetical protein; Provisional

Probab=99.74  E-value=4.5e-15  Score=152.12  Aligned_cols=335  Identities=14%  Similarity=0.067  Sum_probs=197.5

Q ss_pred             CC-CcHHHHHHHHHHhcCCCCC-CCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc--CCCCe
Q 038416           24 LS-DSTVAEDAVVDALRTAHYN-CYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA--RPGAN   99 (387)
Q Consensus        24 ~~-~~~~v~~a~~~~~~~~~~~-~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~g~~   99 (387)
                      ++ .+|.+.+++++++...+.+ .|.     .+.+..+++.+....+  ..-+.++++++|++|++.+++...  ....+
T Consensus       636 lGH~hp~v~~Ai~~q~~~l~~~~~~~-----~~~~~~lAe~L~~~~p--~~~~~v~f~nSGsEA~e~AlklAr~~tGr~~  708 (1013)
T PRK06148        636 VGHAHPRVVAAAARQAARLNTNTRYL-----HDAIVAYAERLTATLP--DGLTVAFFVNSGSEANSLALRLARAHTGQRD  708 (1013)
T ss_pred             cCCCCHHHHHHHHHHHhhcCCcCCcC-----CHHHHHHHHHHHHhCC--CCcCEEEEeCCcHHHHHHHHHHHHHhcCCCe
Confidence            44 6889999999998753221 121     2344555555544332  123678999999999999999864  22367


Q ss_pred             EEEcCCCCcchHHHhhccCCCc------------eeeeeccC--CCCCccC-C-------hhhHHHhhc-----cCceEE
Q 038416          100 ILIPRPGYPLYEIHAAGSNNNL------------EARHYDLL--PEKRWEV-D-------LDGVEALAD-----ENTVAI  152 (387)
Q Consensus       100 vl~~~p~~~~~~~~~~~~~~g~------------~~~~~~~~--~~~~~~~-~-------~~~l~~~~~-----~~~~~v  152 (387)
                      |+....+|++....+. +..+.            .+..++.+  ....+.. +       .+.+++.++     .+..+.
T Consensus       709 ii~~~~~YHG~t~~a~-s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAA  787 (1013)
T PRK06148        709 AIVLDHAYHGTTTELI-DLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAF  787 (1013)
T ss_pred             EEEEcCCccCCCcchh-hcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccCCceEE
Confidence            8999999987643322 01110            11111111  0001110 1       133444442     133455


Q ss_pred             EEeCC-CCCccc-cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceE
Q 038416          153 VIINP-GNPCGN-VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLG  230 (387)
Q Consensus       153 ~l~~p-~nptG~-~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G  230 (387)
                      ++..| +...|. .+|++.++++.++|+++|+++|+||++.+|+..|..+.....++-.   .-|.+++|.+ .+|+++|
T Consensus       788 vI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~---PDivt~gK~l-ggG~Plg  863 (1013)
T PRK06148        788 FIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVV---PDIVTMGKPI-GNGHPMG  863 (1013)
T ss_pred             EEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCC---cceeeecccc-cCCcceE
Confidence            66666 444565 4677889999999999999999999999987665422222222221   2244678996 5689999


Q ss_pred             EEEeeCCCCcccchhHHHHHHhh--hhccCCcchHHHHHHHHHhhhccHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCCC
Q 038416          231 WLVTSDPNGILQNSGFVDSIKGC--LNAASHPVTFIQAAVPRIVDETNEAFFA-KIIGLLKETADICYERIKEIPCITCP  307 (387)
Q Consensus       231 ~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~  307 (387)
                      .+++++        ++.+.+...  ...+++.++++++++.+.|+...++.+. +..+.-...++.+.+..+++|.+.. 
T Consensus       864 av~~~~--------ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~-  934 (1013)
T PRK06148        864 AVVTTR--------EIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGLRELQDRFDIIGD-  934 (1013)
T ss_pred             EEEEcH--------HHHhhccCCCccccCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCceE-
Confidence            999976        677666432  2246778899999888888764433322 2222223333333333333443221 


Q ss_pred             CCCCceEEEEEecCccc---ccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHHHH
Q 038416          308 VKPQGAMFVMVKLNVSM---LEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       308 ~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~  382 (387)
                       ....|.++-+.+....   .+.......+... +.++||.+.+...  ..+.+||.+  .+++++++.+++.|.+++++
T Consensus       935 -VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~-~~~~Gvl~~~~g~--~~~vlr~~Ppl~it~~~id~~l~~l~~~l~~ 1010 (1013)
T PRK06148        935 -VRGMGLFLGIELVTDRKTKAPATAIARYVKNG-ARERGILIGTEGP--HDNVLKIRPPLIFSRADADHLLEVLDDVLAA 1010 (1013)
T ss_pred             -EeeeceEEEEEecCCccccCccHHHHHHHHHH-HHhCCeEEeccCC--CCCEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence             2344666666663211   0000012234444 4667999976422  147788888  46899999999999999987


Q ss_pred             h
Q 038416          383 H  383 (387)
Q Consensus       383 ~  383 (387)
                      +
T Consensus      1011 ~ 1011 (1013)
T PRK06148       1011 A 1011 (1013)
T ss_pred             H
Confidence            5

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.74  E-value=8.4e-16  Score=130.58  Aligned_cols=321  Identities=16%  Similarity=0.187  Sum_probs=205.0

Q ss_pred             CcHHHHHHHHHHhcCCCCC---CCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc------C-
Q 038416           26 DSTVAEDAVVDALRTAHYN---CYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA------R-   95 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~---~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~------~-   95 (387)
                      .+|.+.+++++++..-+..   .|..  ...+..+-+++++        ..+.++-++.+.+|.+.++....      + 
T Consensus        76 chpki~~aLqeq~~kLtlssrafYnd--~~~~f~~~vt~lf--------~~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~  145 (427)
T KOG1402|consen   76 CHPKIIKALQEQADKLTLSSRAFYND--VLGEFAEYVTKLF--------GYDKVLPMNTGAEAVETACKLARKWGYRKKN  145 (427)
T ss_pred             CCHHHHHHHHHHHhHhhhhhHHHhhh--hHHHHHHHHHHhc--------CcceeeecccchhHHHHHHHHHHHHHHhhcc
Confidence            7899999999988753221   2332  3345666666665        34677777778999999988754      1 


Q ss_pred             -CC--CeEEEcCCCCcchHHHhhccCCCceeeee----ccCCC-CC--ccCChhhHHHhhccCceEEEEeCC-CCCcccc
Q 038416           96 -PG--ANILIPRPGYPLYEIHAAGSNNNLEARHY----DLLPE-KR--WEVDLDGVEALADENTVAIVIINP-GNPCGNV  164 (387)
Q Consensus        96 -~g--~~vl~~~p~~~~~~~~~~~~~~g~~~~~~----~~~~~-~~--~~~~~~~l~~~~~~~~~~v~l~~p-~nptG~~  164 (387)
                       |.  ..|+....+|++-...+.  ..+-+...+    |..|. .+  .-=|.++|+.+++....+.++..| +...|++
T Consensus       146 ip~nka~il~~~~nFhGrT~~ai--s~s~d~ds~~~fgp~~P~~~~~v~Y~d~eale~~l~~~~vaaFivEPIQGEaGVv  223 (427)
T KOG1402|consen  146 IPKNKAKILSAENNFHGRTLGAI--SLSTDPDSWDGFGPFLPGVVDKVPYGDAEALEVALKSPNVAAFIVEPIQGEAGVV  223 (427)
T ss_pred             CCccceeEEEecccccCceeeeE--EecCCcchhhccCCCCCCcceeeccCCHHHHHHHhcCCCeeEEEeeccccccceE
Confidence             22  245555666654222222  111111000    00000 00  001789999999876666677777 8899997


Q ss_pred             CCH-HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEeeCCCCccc
Q 038416          165 FSY-QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQ  242 (387)
Q Consensus       165 ~~~-~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~  242 (387)
                      .|+ .-+++..++|++||+++|.||++.++...|+-..-  .++. ...++.   +.|+++..-++++.+++++      
T Consensus       224 vP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~--d~env~PDivi---lgKalSGG~~Pvsavl~~~------  292 (427)
T KOG1402|consen  224 VPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLAC--DYENVRPDIVI---LGKALSGGVYPVSAVLADD------  292 (427)
T ss_pred             eCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEe--ehhhcCCCeEE---EeccccCCeeeeEEEEecH------
Confidence            554 45999999999999999999999998877752211  1111 122444   4599766668899999876      


Q ss_pred             chhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCC----CCCCCCCCCceEEEE
Q 038416          243 NSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIP----CITCPVKPQGAMFVM  317 (387)
Q Consensus       243 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~g~~~~  317 (387)
                        +++-.+....+ .+++.++++...+.++|+-..++-+   .++.+..-+.++..|.+++    .+... ...-|.++.
T Consensus       293 --~im~~~~pgeHgsTyggNpLg~~vaiAalevi~eekL---~era~~lG~~l~~~L~~l~~~~p~~v~~-VRGrGl~~a  366 (427)
T KOG1402|consen  293 --DIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIVEEKL---VERAAKLGEILRDQLNKLQKKFPHVVKE-VRGRGLLNA  366 (427)
T ss_pred             --HHHhccCCCccccccCCChHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccccccchhhe-eeccceEEE
Confidence              66665554433 4678899999988888876444444   4444455556666666653    22212 334577777


Q ss_pred             EecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHHH
Q 038416          318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~  381 (387)
                      +.+.....++. +++..+..+ ++.|++.-|..    ++.||+.+  .++++|+++.++.|.+++.
T Consensus       367 i~i~~~~~~~~-~aw~~cl~l-k~~g~LAkptH----~~IiRfaPPL~I~e~dl~eg~e~i~k~i~  426 (427)
T KOG1402|consen  367 IVINPSKTSGQ-DAWDVCLAL-KENGLLAKPTH----GNIIRFAPPLVISEEDLREGIEAIEKTIA  426 (427)
T ss_pred             EEeccccccch-hHHHHHHcc-cccccccCCCC----CCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence            76653322222 455666654 77798887753    57899999  5799999999999988764

>PLN02263 serine decarboxylase

Probab=99.74  E-value=2e-14  Score=132.92  Aligned_cols=298  Identities=14%  Similarity=0.011  Sum_probs=200.9

Q ss_pred             CcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC--CCCeEEEcCCCCcchHHHhhccCCCceeeeecc
Q 038416           51 GVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR--PGANILIPRPGYPLYEIHAAGSNNNLEARHYDL  128 (387)
Q Consensus        51 ~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~  128 (387)
                      ...++++.+.+|+.+.++.+-....=++|+|||+++..++.+..+  +...+++++.+|+++...+.  .+|++++.+|+
T Consensus       130 ~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~--llgi~~~~Vp~  207 (470)
T PLN02263        130 HSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAAR--MYRMECVKVDT  207 (470)
T ss_pred             hHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHH--hcCCcceEecc
Confidence            467899999999999888643222357899999999999888754  23478889999999999999  99999999998


Q ss_pred             CCCCCccCChhhHHHhhccCc---eEEEEeCCCCCccccCCHHHHHHHHHHHHhcCc-----EEeecccccccccCCC-C
Q 038416          129 LPEKRWEVDLDGVEALADENT---VAIVIINPGNPCGNVFSYQHLQKIARTARNLGI-----IVIADEVYNHLAFGST-P  199 (387)
Q Consensus       129 ~~~~~~~~~~~~l~~~~~~~~---~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~-----~li~D~~~~~~~~~~~-~  199 (387)
                      +  .++.+|+++|++++..++   .+|+.+.++.++|.+   +++++|+++|+++|+     |+++|.+|+++...-. .
T Consensus       208 d--~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAi---Dpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~  282 (470)
T PLN02263        208 L--VSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAV---DDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKR  282 (470)
T ss_pred             C--CCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCC---CCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhccc
Confidence            5  456899999999887654   345556678899999   779999999999996     9999999998654211 1


Q ss_pred             CccccccCCCccEEEEecCcccccccccceEEEEeeCCCC--cccchhHHHHHHhhhhccCCcchHH--HHHHHHHhhhc
Q 038416          200 YVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNG--ILQNSGFVDSIKGCLNAASHPVTFI--QAAVPRIVDET  275 (387)
Q Consensus       200 ~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  275 (387)
                      ...+. +... -.=+..+.+|+ +.....+|.++.+++..  +..+++   .+... ..+...+...  ...+-..|...
T Consensus       283 ~~~~d-f~~~-vDSIsvD~HK~-l~~P~~cgvll~R~~~~~~~~~~~~---Yl~~~-d~ti~gSR~g~~al~lW~~L~~~  355 (470)
T PLN02263        283 APKVT-FKKP-IGSVSVSGHKF-VGCPMPCGVQITRMEHINVLSSNVE---YLASR-DATIMGSRNGHAPIFLWYTLNRK  355 (470)
T ss_pred             ccccC-CCcC-ccEEEECCccc-cCCCcCEEEEEEehhhHhhhccChH---hhCCC-CCCcCCCCCcHHHHHHHHHHHHh
Confidence            11111 1111 11234579999 45558899999986210  000111   11111 1111122222  23333445555


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCC
Q 038416          276 NEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMK  355 (387)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~  355 (387)
                      +.+.+.+..++..++++++.+.|++. ++..+..|.....+| +-+        .. ..     ..+|..+.+-     +
T Consensus       356 G~~G~~~~i~~~~~~A~~l~~~l~~~-g~~~~~~p~s~~V~f-~~p--------~~-~~-----~~~gW~L~~~-----~  414 (470)
T PLN02263        356 GYRGFQKEVQKCLRNAHYLKDRLREA-GISAMLNELSSTVVF-ERP--------KD-EE-----FVRRWQLACQ-----G  414 (470)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEeCCCceEEEE-ecC--------ch-HH-----hhcceEEccC-----C
Confidence            67889999999999999999999988 566565666443333 222        11 11     1246666542     3


Q ss_pred             CeEEEEe--eCChHhHHHHHHHHHHHHHHh
Q 038416          356 NWLRIAF--AAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       356 ~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      +.++|++  ..+.+.+++.++.|++..+.+
T Consensus       415 ~~~Hivvmphv~~~~id~fi~DL~~~~~~~  444 (470)
T PLN02263        415 NIAHVVVMPSVTIEKLDYFLKELVEKRSTW  444 (470)
T ss_pred             CcEEEEEcCCCCHHHHHHHHHHHHHHHhhh
Confidence            5688888  357899999999998887754

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=99.73  E-value=5.3e-15  Score=133.29  Aligned_cols=333  Identities=14%  Similarity=0.023  Sum_probs=210.5

Q ss_pred             ccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCC-C-------CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCC
Q 038416           10 RHSPWPRRPLGVSLLSDSTVAEDAVVDALRTA-H-------YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLG   81 (387)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~-~-------~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g   81 (387)
                      .+++++|.-      .+|+.|++++++.+.+. .       .+++++  ...++-+.+.+.+++.++.+.+.+-++++.|
T Consensus         5 ~~nF~aGPa------~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~--~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~Gg   76 (364)
T PRK12462          5 QLNFSGGPG------ALPDTVLEQVRQAVVELPETGLSVLGMSHRSS--WFSSLLAQAEADLRDLLGIPDEYGVVFLQGG   76 (364)
T ss_pred             cceecCCCc------CCCHHHHHHHHHHHhcccccCccccccccccH--HHHHHHHHHHHHHHHHhCCCCCCeEEEEecc
Confidence            456667633      68899999998777652 1       234433  4456666666666666665433434456677


Q ss_pred             hHHHHHHHHHhhcCCCCeEE-EcCCCCcc--hHHHhhccCCCceeeeeccCCCC--CccCChhhHHHhhccCceEEEEeC
Q 038416           82 CSQAIEISLSVLARPGANIL-IPRPGYPL--YEIHAAGSNNNLEARHYDLLPEK--RWEVDLDGVEALADENTVAIVIIN  156 (387)
Q Consensus        82 ~~~a~~~~~~~l~~~g~~vl-~~~p~~~~--~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~v~l~~  156 (387)
                      +|.+++++...|+++|++++ +...++++  +...++  .+| ++..+......  +..++++++  .++++.+.|.+++
T Consensus        77 gT~~~ea~~~Nll~~g~~~~~~~~tG~fg~r~~~ea~--~~g-~v~~~~~~~~~~~~~~p~~~~~--~~~~d~~~v~~t~  151 (364)
T PRK12462         77 SSLQFSMIPMNFSRPGAAAPEYVTTGYWSRKAIGEAS--RVA-AMRVVWDGAASGYRTLPSLAEL--DWDARAPFRHYVS  151 (364)
T ss_pred             HHHHHHHHHHHcCCCCCcEEEEEeCCHHHHHHHHHHH--hcC-CceEecCcCCCCCCcCCCHHHh--ccCCCCcEEEEcc
Confidence            99999999999999998665 55566654  345555  566 44443221111  223445554  2344678888888


Q ss_pred             CCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeC
Q 038416          157 PGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSD  236 (387)
Q Consensus       157 p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~  236 (387)
                      -...||+.++        ++.+.+++++|+|.+.+.+.    .+..+..+     .++..+..|.+|.+|  ++.++.++
T Consensus       152 NETstGv~~~--------~~~~~~~~llvvD~sS~~~s----~pid~~~~-----dvi~agsQKnlgP~G--ltvvivs~  212 (364)
T PRK12462        152 NETVEGLQFP--------DAAGLPDSPLIADMSSDFMS----RPFDVEAY-----GMVYAHAQKNLGPAG--VTVAIIRR  212 (364)
T ss_pred             CCCCceEecC--------cccccCCCeEEEEcCchhhC----CCCChHHc-----cEEEeeccccCCCCc--eEEEEECH
Confidence            8889999986        22223689999999988532    22333333     377778899999887  67777765


Q ss_pred             CCCcc---cchhHHHHHHhh--hhccCCcchHHHHHHHHHhhhccHH--HHHHHHHHHHHHHHHHHHHhhcCCCCCCC-C
Q 038416          237 PNGIL---QNSGFVDSIKGC--LNAASHPVTFIQAAVPRIVDETNEA--FFAKIIGLLKETADICYERIKEIPCITCP-V  308 (387)
Q Consensus       237 ~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~  308 (387)
                      ...-.   .-|.+.+.....  .....+|+.+..+++...++...++  .++.+.++.++.++.+++.+++.+++... .
T Consensus       213 ~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~  292 (364)
T PRK12462        213 ALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHA  292 (364)
T ss_pred             HHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCC
Confidence            21100   012222211111  1234578888888888888876555  89999999999999999999998644422 1


Q ss_pred             CCC--ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHHHH
Q 038416          309 KPQ--GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       309 ~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~  382 (387)
                      .+.  +.+-+.+++....     -..+|+.. ++++|+.-..|...  .+.+|+|+  +.+.|.++++++-+++.-++
T Consensus       293 ~~~~RS~mnv~f~~~~~~-----l~~~f~~~-a~~~gl~~lkGhr~--vgg~Ras~yna~~~e~v~~L~~fm~~f~~~  362 (364)
T PRK12462        293 HRAARSTMNVAFRFRQPR-----LDTLFKEQ-STEAGFCGLSGHRS--IGGIRASLYNAVSEQAVSRLCAFLKDFAIR  362 (364)
T ss_pred             ChhhcCcceEEEEcCCHH-----HHHHHHHH-HHHCCCccccCCcc--cCceEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence            222  2333344444321     13445554 57889988776532  46699999  56889999888888777654

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.73  E-value=8.4e-15  Score=136.77  Aligned_cols=316  Identities=16%  Similarity=0.083  Sum_probs=186.2

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCC-----CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCe
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSP-----TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGAN   99 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~-----~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~   99 (387)
                      +.++.+.+++.+.+.......|..     ..-+..+++.++++++        .+..+++++++.|+..++.+ +.+||+
T Consensus        92 ~l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~g--------ae~alvv~sg~aAi~l~l~~-l~~Gde  162 (454)
T TIGR00474        92 PLAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTG--------AEDALVVNNNAAAVLLALNT-LAKGKE  162 (454)
T ss_pred             CCCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHH-hCCcCE
Confidence            578999999999887421111211     1123678888888883        34566778888899988855 578999


Q ss_pred             EEEcCCCCc---c---hHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCc--cc--cCCHHH
Q 038416          100 ILIPRPGYP---L---YEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPC--GN--VFSYQH  169 (387)
Q Consensus       100 vl~~~p~~~---~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~npt--G~--~~~~~~  169 (387)
                      |++++..|.   +   +...++  ..|+++..++.+.    ..++++++++++++|++|++.+++|++  |.  ..+   
T Consensus       163 VIvs~~e~v~~ggs~~i~~~~~--~~G~~~~~v~~~~----~~~l~dle~aI~~~T~lv~~~h~sN~~~~G~~~~~d---  233 (454)
T TIGR00474       163 VIVSRGELVEIGGSFRIPDVME--QSGAKLVEVGTTN----RTHLKDYEDAITENTALLLKVHTSNYRIVGFTEEVS---  233 (454)
T ss_pred             EEECCChhhhhcchhhHHHHHH--HcCCEEEEeCCCC----CCCHHHHHHhcCcCCEEEEEEccCcccccCCCCCCC---
Confidence            999887642   1   234556  7899998886532    247899999999999999999999985  53  444   


Q ss_pred             HHHHHHHHHhcCcEEeecccccccccC---CCCCcc-ccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchh
Q 038416          170 LQKIARTARNLGIIVIADEVYNHLAFG---STPYVP-MGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSG  245 (387)
Q Consensus       170 ~~~l~~~~~~~~~~li~D~~~~~~~~~---~~~~~~-~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~  245 (387)
                      +++|+++|+++|+++++|...+.+.-.   +-...+ +......+-.+++.|.+|+++.+  ..|++++++        +
T Consensus       234 l~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp--~~G~i~g~~--------~  303 (454)
T TIGR00474       234 IAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGP--QAGIIVGKK--------E  303 (454)
T ss_pred             HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCC--eEEEEEECH--------H
Confidence            899999999999999999864432110   000111 11111112238899999996544  479998875        5


Q ss_pred             HHHHHHhhh-hccCCcchHHHHHHHHHhhhc---c--------HHHHHHHHHHHHHHHHHHHHHhhcC--CCCCC--CCC
Q 038416          246 FVDSIKGCL-NAASHPVTFIQAAVPRIVDET---N--------EAFFAKIIGLLKETADICYERIKEI--PCITC--PVK  309 (387)
Q Consensus       246 ~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~---~--------~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~--~~~  309 (387)
                      +++++++.. ............++...+...   .        -..+..+.+++.++++.+.+.|+..  +++..  ...
T Consensus       304 ~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~  383 (454)
T TIGR00474       304 LIERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAALGPGFELEIVPG  383 (454)
T ss_pred             HHHhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhhccCCceEEEEEc
Confidence            666554321 000111222222222222211   1        1234445566677777777777653  22211  100


Q ss_pred             C---CceE-------EEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe-eCChHhHHHHHHHH
Q 038416          310 P---QGAM-------FVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF-AAEPATLEDGLERI  376 (387)
Q Consensus       310 ~---~~g~-------~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~-~~~~e~~~~~~~~l  376 (387)
                      +   .+|.       ...+.+...   + .+..++... +++....+..-.   .++.+.+.+ +..++|++.+++.|
T Consensus       384 ~~~~ggg~~p~~~l~~~~v~~~~~---~-~~~~~l~~~-lr~~~~~ii~r~---~~~~~~ld~r~~~~~~~~~~~~~~  453 (454)
T TIGR00474       384 LSQVGGGSLPDERLPSYAVTLTPD---G-LSAEKLEAR-LRELPPPIIGRI---EDDRFLLDLRTLLEDEEELLIEAL  453 (454)
T ss_pred             CCcccCCCCcCCCCCeEEEEEecC---C-CCHHHHHHH-HhcCCCCEEEEE---ECCEEEEEeCcCCHHHHHHHHHHh
Confidence            0   1111       111222211   1 134455554 466564443311   256777777 56788888877765

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=99.72  E-value=1.4e-15  Score=127.23  Aligned_cols=319  Identities=15%  Similarity=0.058  Sum_probs=199.1

Q ss_pred             CCCCCCcHHHHHHHHHHhcCCCCC------CCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc
Q 038416           21 VSLLSDSTVAEDAVVDALRTAHYN------CYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA   94 (387)
Q Consensus        21 ~~~~~~~~~v~~a~~~~~~~~~~~------~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~   94 (387)
                      |..+..+|++.++-+++++.-...      -.+...-...|++.||++.        ..++.++.+++-.|+..++.+++
T Consensus        77 YLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~kiAqfh--------~rED~ilypscfdANag~feail  148 (417)
T KOG1359|consen   77 YLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQFH--------GREDTILYPSCFDANAGAFEAIL  148 (417)
T ss_pred             cccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHHHHHh--------CCCceEEeccccccchHHHHHhc
Confidence            457789999999999999852110      0011112356778888887        56888999999999999999999


Q ss_pred             CCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHH----hhccCceEEEEeCCCCCccccCCHHHH
Q 038416           95 RPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEA----LADENTVAIVIINPGNPCGNVFSYQHL  170 (387)
Q Consensus        95 ~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~v~l~~p~nptG~~~~~~~~  170 (387)
                      .|.|.|....-.|-++.+..+  ... ...          .+|+..++.    +.+.+.++|+--..-+..|.+.|   +
T Consensus       149 ~pedAvfSDeLNhASIIdGir--Lck-ry~----------h~dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaP---l  212 (417)
T KOG1359|consen  149 TPEDAVFSDELNHASIIDGIR--LCK-RYR----------HVDVFDLEHCLISACKMRLKLVVTDGVFSMDGDIAP---L  212 (417)
T ss_pred             ChhhhhhccccccchhhhhhH--HHh-hhc----------cchhHHHHHHHHHhhhheEEEEEecceeccCCCccc---H
Confidence            999999999889988776666  433 111          123444443    33334444544444668899977   7


Q ss_pred             HHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHH
Q 038416          171 QKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDS  249 (387)
Q Consensus       171 ~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~  249 (387)
                      ++|.+++++||.++++||+|+.+.++..+...-..+.. .+-.+..++++|++|  |.-.||..+++        .++.-
T Consensus       213 ~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlG--ga~GGyttgp~--------~li~l  282 (417)
T KOG1359|consen  213 EEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALG--GASGGYTTGPK--------PLISL  282 (417)
T ss_pred             HHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhc--CCCCCCccCCh--------hHHHH
Confidence            88888888999999999999987666444333222221 123477789999965  44459999987        57776


Q ss_pred             HHhhhh--ccCCcchHHHH-HHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccccc
Q 038416          250 IKGCLN--AASHPVTFIQA-AVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE  326 (387)
Q Consensus       250 ~~~~~~--~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~  326 (387)
                      +++...  .+++.-|++.. ...+++.-...  -.+..++++.+-+++++.++.- |+.+. ... -+.+-+.+...   
T Consensus       283 lrqr~RpylFSnslppavV~~a~ka~dllm~--s~~~i~~~~a~~qrfr~~me~a-GftIs-g~~-hPI~pv~lGda---  354 (417)
T KOG1359|consen  283 LRQRSRPYLFSNSLPPAVVGMAAKAYDLLMV--SSKEIQSRQANTQRFREFMEAA-GFTIS-GAS-HPICPVMLGDA---  354 (417)
T ss_pred             HHhcCCceeecCCCChhhhhhhHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHhc-Cceec-CCC-CCccceecccH---
Confidence            665532  22333332221 12222211111  2345566666777777776654 66632 211 11222222211   


Q ss_pred             CCCcHHHHHHHHHHhcCeEEEcCCccCC---CCeEEEEee--CChHhHHHHHHHHHHHHHHhh
Q 038416          327 DIGDDLEFCLKLAKEESVIILPGRTVGM---KNWLRIAFA--AEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       327 ~~~~~~~~~~~ll~~~gi~v~~g~~~~~---~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~  384 (387)
                        .-+.++.+++++. ||.|..-+..-.   ...+|+.++  +++|+++++++++.++.+-+.
T Consensus       355 --~lA~~~ad~lLk~-Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr~~~  414 (417)
T KOG1359|consen  355 --RLASKMADELLKR-GIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGRFLN  414 (417)
T ss_pred             --HHHHHHHHHHHhc-CceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHHhhc
Confidence              1245677888765 999876443222   245777774  689999999999998877553

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.72  E-value=5.3e-15  Score=129.74  Aligned_cols=345  Identities=15%  Similarity=0.128  Sum_probs=207.4

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCC-CC-CCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTA-HY-NCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQA   85 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~-~~-~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a   85 (387)
                      ..|++.+-++-..-++.. .|++.+++.+.+..- +. +.|... ....+.+.+.+.+.+     -.++.|++++++|+|
T Consensus        56 ~EyiD~~ssw~~~~~Gha-npev~ral~~q~~k~~hs~~~~~t~-eav~l~~~l~~~~~~-----~~~~rvff~nsGTeA  128 (433)
T KOG1401|consen   56 KEYIDFTSSWAVTILGHA-NPEVARALAEQAKKLGHSSNGYFTL-EAVELEEVLSAVLGK-----GSAERVFFCNSGTEA  128 (433)
T ss_pred             ceeeeeccceeccccCCC-CHHHHHHHHHHHhhheeccCccccH-HHHHHHHHHHhcccC-----CCccEEEEecCCcHH
Confidence            456666555544444555 888888888887752 22 222221 134555555555432     267899999999999


Q ss_pred             HHHHHHhhcCC--------CCeEEEcCCCCcchHHHhhccCCCceeeeeccCC---C--CCccCChhhHHHhhccCc---
Q 038416           86 IEISLSVLARP--------GANILIPRPGYPLYEIHAAGSNNNLEARHYDLLP---E--KRWEVDLDGVEALADENT---  149 (387)
Q Consensus        86 ~~~~~~~l~~~--------g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~---~--~~~~~~~~~l~~~~~~~~---  149 (387)
                      ++.++....+.        ..+++....+|++-...+. +..+...+..|.++   +  ...--|+.++++.++.+.   
T Consensus       129 ne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgal-s~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~~~I  207 (433)
T KOG1401|consen  129 NETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGAL-SVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHKGEI  207 (433)
T ss_pred             HHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHH-HhhcccccCCCCCCCCCceeecccCCHHHHHHHHHhCCCce
Confidence            99999886421        1249999999986332222 01222222222111   1  001126888999887665   


Q ss_pred             eEEEEeCCCCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCCccEEEEecCccccccccc
Q 038416          150 VAIVIINPGNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVITLGSISKRWIVPGW  227 (387)
Q Consensus       150 ~~v~l~~p~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~s~sK~~~~~g~  227 (387)
                      .+||+...+...|.. ..++++..|.+.|+++++++|.||++.+|...|..... .....+     .|.++.|.+ ..|+
T Consensus       208 aAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~P-----DI~t~aK~L-~gGl  281 (433)
T KOG1401|consen  208 AAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTP-----DITTVAKPL-GGGL  281 (433)
T ss_pred             EEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCcCC-----cceeehhhc-cCCc
Confidence            344444447778876 57788999999999999999999999997766543221 111222     256788995 6779


Q ss_pred             ceEEEEeeCCCCcccchhHHHHHHhhh----hccCCcchHHHHHHHHHhhhcc-HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 038416          228 RLGWLVTSDPNGILQNSGFVDSIKGCL----NAASHPVTFIQAAVPRIVDETN-EAFFAKIIGLLKETADICYERIKEIP  302 (387)
Q Consensus       228 r~G~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~  302 (387)
                      ++|..++++        ++.+.+..-.    ..+++.+++++.+....|.... .+++++....-...++.+.+.+.+.+
T Consensus       282 PigA~~v~~--------kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k~L~~~l~e~~~~~~  353 (433)
T KOG1401|consen  282 PIGATGVRD--------KVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSKIGKELRKLLDEYLKKTP  353 (433)
T ss_pred             eeEEEeehH--------HHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            999999987        6666665331    2567889999999888887644 45556666666677777777777654


Q ss_pred             CCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe------eCChHhHHHHHHHH
Q 038416          303 CITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF------AAEPATLEDGLERI  376 (387)
Q Consensus       303 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~------~~~~e~~~~~~~~l  376 (387)
                      ..... ....++++.+.+..+.       ..+.+. .+..+.++.++..-.....+|+.+      .+++|.++++++.+
T Consensus       354 ~~i~g-~~grgl~ig~~~~~p~-------~~~~d~-~~~~~ll~~~~~~~~~~~gv~i~P~~~l~~~~~~E~i~~~l~i~  424 (433)
T KOG1401|consen  354 NSICG-GVGRGLVIGFEFEGPV-------YKFADA-AREQGLLILTLGKGLLEEGVRIAPIYLLTVEHTPEVIQRLLTIL  424 (433)
T ss_pred             Cceee-eeeeEEEEEEEEeech-------hhhhhh-hhhhhHHHHHHhcccccceEEEeccccccccCcHHHHHHHHHHH
Confidence            32212 2334555554443321       111111 122222222221111122344444      34589999999999


Q ss_pred             HHHHHHh
Q 038416          377 KAFCQRH  383 (387)
Q Consensus       377 ~~~~~~~  383 (387)
                      .+.++++
T Consensus       425 ~~~l~~~  431 (433)
T KOG1401|consen  425 EKVLSAL  431 (433)
T ss_pred             HHHHHHh
Confidence            8888764

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.72  E-value=2.3e-14  Score=135.25  Aligned_cols=352  Identities=15%  Similarity=0.083  Sum_probs=198.0

Q ss_pred             cccCCCCCCCCCCCCCC-CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCC-CCEEEcCChHHHH
Q 038416            9 TRHSPWPRRPLGVSLLS-DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSP-EDVYLTLGCSQAI   86 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~-~~i~~~~g~~~a~   86 (387)
                      .++++.-|.-...  ++ .+|.+.+++++++.........  ....+.+..+++.+....+..... ..+++++++++|+
T Consensus        59 ~ylD~~~g~~~~~--lGH~~p~v~~Ai~~q~~~~~~~~~~--~~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAv  134 (459)
T PRK06931         59 QYLDCLAGAGTLA--LGHNHPDVLQSIQDVLTSGLPLHTL--DLTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAV  134 (459)
T ss_pred             EEEEcccchhhcc--CCCCCHHHHHHHHHHHhhhcccccc--ccCCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHH
Confidence            4555544432122  23 6778999999988742211111  112355566666665533211011 2346668999999


Q ss_pred             HHHHHhhc--CCCCeEEEcCCCCcchHHHhhccCCC-------------ceeeeeccCCCCC--cc----CChhhH----
Q 038416           87 EISLSVLA--RPGANILIPRPGYPLYEIHAAGSNNN-------------LEARHYDLLPEKR--WE----VDLDGV----  141 (387)
Q Consensus        87 ~~~~~~l~--~~g~~vl~~~p~~~~~~~~~~~~~~g-------------~~~~~~~~~~~~~--~~----~~~~~l----  141 (387)
                      +.+++...  ...++|+....+|++....+.  ...             .++..++.+....  +.    -+.+.+    
T Consensus       135 e~AlklAr~~tgr~~Ii~~~~~yHG~t~~al--s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (459)
T PRK06931        135 EAAIKLAKTYTGRSNVISFSGGYHGMTHGAL--AVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYF  212 (459)
T ss_pred             HHHHHHHHHhcCCCeEEEECCCcCCccHHHH--hhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHH
Confidence            99998753  233689999999998654443  211             1122222211000  00    112222    


Q ss_pred             HHhhc-----cCceEEEEeCC-CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEE
Q 038416          142 EALAD-----ENTVAIVIINP-GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVIT  214 (387)
Q Consensus       142 ~~~~~-----~~~~~v~l~~p-~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (387)
                      ++.++     ....+.++..| +...|.. .|++.++++.++|++||+++|.||++.+|...|..+. ...++-...   
T Consensus       213 ~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a-~~~~gv~PD---  288 (459)
T PRK06931        213 ENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFA-FEHAGIEPD---  288 (459)
T ss_pred             HHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHH-hhhcCCCCC---
Confidence            33332     12345555666 5556765 5778899999999999999999999999875554222 112222212   


Q ss_pred             EecCcccccccccceEEEEeeCCCCcccchhHHHHHHhh-hhccCCcchHHHHHHHHHhhhccHHHH-HHHHHHHHHHHH
Q 038416          215 LGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGC-LNAASHPVTFIQAAVPRIVDETNEAFF-AKIIGLLKETAD  292 (387)
Q Consensus       215 i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~  292 (387)
                      |.+++|.+ .+|+++|.++.++        + ++.+... ...+++.++++.+++.+.|+...++.+ .+..+.-...++
T Consensus       289 ivt~gK~l-~gG~Pi~av~~~~--------~-~~~~~~~~~~~T~~gnpla~aaala~L~~l~~~~l~~~~~~~G~~l~~  358 (459)
T PRK06931        289 IIVMSKAV-GGGLPLAVLGIKK--------E-FDAWQPGGHTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGEWLKA  358 (459)
T ss_pred             EEEecccc-cCCcceeeeeeHH--------H-HhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            34678996 4579999888754        2 3433222 224667889998888888876443322 222222233333


Q ss_pred             HHHHHhhcCCCCCCCCCCCceEEEEEecCcccc--------cCCCc-HHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee
Q 038416          293 ICYERIKEIPCITCPVKPQGAMFVMVKLNVSML--------EDIGD-DLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA  363 (387)
Q Consensus       293 ~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~-~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~  363 (387)
                      .+.+..++.|.+..  ....|.++.+.+.....        +.... ...+.. .+.++|+.+.++..  ..+.+|+.+.
T Consensus       359 ~L~~l~~~~~~i~~--vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Gvl~~~~~~--~~~~l~~~Pp  433 (459)
T PRK06931        359 QLAELQKRYPCIGN--VRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQK-ACFENGLLLERGGR--NGNVVRLLPP  433 (459)
T ss_pred             HHHHHHHhCCCeEe--EecCceEEEEEEccCcccccccccCCccHHHHHHHHH-HHHHCCcEEeecCC--CCCEEEEECC
Confidence            44333334543331  23446666666632110        00001 123333 34567999876432  2467898884


Q ss_pred             --CChHhHHHHHHHHHHHHHHhhh
Q 038416          364 --AEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       364 --~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                        .++++++++++++.++++++-+
T Consensus       434 l~it~~eid~~~~~l~~~l~~~~~  457 (459)
T PRK06931        434 LLITQAECEEFIDRFEQALLAAVK  457 (459)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHh
Confidence              6899999999999999987654

>PRK08297 L-lysine aminotransferase; Provisional

Probab=99.72  E-value=1.1e-14  Score=136.99  Aligned_cols=328  Identities=15%  Similarity=0.132  Sum_probs=181.3

Q ss_pred             CcHHHHH--HHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC--------
Q 038416           26 DSTVAED--AVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR--------   95 (387)
Q Consensus        26 ~~~~v~~--a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--------   95 (387)
                      .+|.+.+  ++++++..-.........-..+....+++.+.+..+ +-.-+.+++++||++|++.+++...+        
T Consensus        62 ~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l~~~~~-p~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~  140 (443)
T PRK08297         62 NHPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTFARVLG-DPELPHLFFVDGGALAVENALKVAFDWKSRKNEA  140 (443)
T ss_pred             CChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHHHhhcC-CCCCCEEEEeCchHHHHHHHHHHHHHHhhccccc
Confidence            5677778  888887642110000000112233334444433221 11346999999999999999998631        


Q ss_pred             C------CCeEEEcCCCCcchHHHhhccCCCcee-e----------eeccCCC----CCcc---------CChhhHHHhh
Q 038416           96 P------GANILIPRPGYPLYEIHAAGSNNNLEA-R----------HYDLLPE----KRWE---------VDLDGVEALA  145 (387)
Q Consensus        96 ~------g~~vl~~~p~~~~~~~~~~~~~~g~~~-~----------~~~~~~~----~~~~---------~~~~~l~~~~  145 (387)
                      .      ..+|+....+|++....+. +..+... .          .++....    .+..         -+++++++.+
T Consensus       141 ~g~~~~~r~kii~~~~~yHG~t~~al-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  219 (443)
T PRK08297        141 RGIDPALGTKVLHLRGAFHGRSGYTL-SLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAF  219 (443)
T ss_pred             cCCCCCCCceEEEECCCcCCcchhhh-hhcCCcccccccCCCCCccccCCCCCCCCCcccccchhhHHHHHHHHHHHHHH
Confidence            1      2579999999998654433 0111110 0          0110000    0000         0234455555


Q ss_pred             cc--CceEEEEeCC-CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCccc
Q 038416          146 DE--NTVAIVIINP-GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKR  221 (387)
Q Consensus       146 ~~--~~~~v~l~~p-~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~  221 (387)
                      ..  +..+.++..| +...|.. +|++.++++.++|++||+++|.||++.+|...|..+.. ..++....++   +++|.
T Consensus       220 ~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~-~~~gv~PDiv---~~gK~  295 (443)
T PRK08297        220 ERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAY-QQLGVRPDIV---AFGKK  295 (443)
T ss_pred             HhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHH-HhcCCCCCEE---Eeccc
Confidence            42  3344455566 5556664 77788999999999999999999999988666543221 1122111223   57898


Q ss_pred             ccccccceEEEEeeCCCCcccchhHHHHH----H--hhhhccCCcchHHHHHHHHHhhhccHHH-HHHHHHHHHHHHHHH
Q 038416          222 WIVPGWRLGWLVTSDPNGILQNSGFVDSI----K--GCLNAASHPVTFIQAAVPRIVDETNEAF-FAKIIGLLKETADIC  294 (387)
Q Consensus       222 ~~~~g~r~G~i~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~  294 (387)
                      ++     +|.++..+        ++.+.+    .  .....+++.++++..++.+.|+...+.. +++..+.-...++.+
T Consensus       296 l~-----~~a~l~~~--------~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L  362 (443)
T PRK08297        296 TQ-----VCGIMAGR--------RVDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIEEDGLVENAARQGEYLLARL  362 (443)
T ss_pred             cc-----ccceecch--------HHHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            52     23333332        221111    1  0122456678888888888777543322 233333333333344


Q ss_pred             HHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHH
Q 038416          295 YERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDG  372 (387)
Q Consensus       295 ~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~  372 (387)
                      .+..++.|.+. ......|.++.+.++..     .....+...+ .++||.+.|+.    .+.+|+++  .+++++++.+
T Consensus       363 ~~l~~~~~~~~-~~vrg~G~~~~i~~~~~-----~~~~~~~~~l-~~~Gvl~~~~~----~~~lr~~P~l~~t~~eid~~  431 (443)
T PRK08297        363 EELAAEFPAVV-SNVRGRGLMCAFDLPTT-----ADRDEVIRRL-WEEGVLVLPCG----ERSIRFRPALTVTTEEIDAA  431 (443)
T ss_pred             HHHHHHCCCcc-eeeeccceEEEEEecCH-----HHHHHHHHHH-HHCCEEEecCC----CCeEEEECCccCCHHHHHHH
Confidence            33333344332 01223467777777531     0123455555 46799998753    35789976  5689999999


Q ss_pred             HHHHHHHHHHh
Q 038416          373 LERIKAFCQRH  383 (387)
Q Consensus       373 ~~~l~~~~~~~  383 (387)
                      +++|.++++++
T Consensus       432 l~~l~~~l~~~  442 (443)
T PRK08297        432 IDALRRALPEV  442 (443)
T ss_pred             HHHHHHHHHhh
Confidence            99999998765

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.71  E-value=1.4e-14  Score=137.60  Aligned_cols=268  Identities=15%  Similarity=0.112  Sum_probs=173.9

Q ss_pred             HHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCC----------C-CCCCEEEcCChHHHHHHHHHhhcC-------
Q 038416           34 VVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYK----------L-SPEDVYLTLGCSQAIEISLSVLAR-------   95 (387)
Q Consensus        34 ~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~----------~-~~~~i~~~~g~~~a~~~~~~~l~~-------   95 (387)
                      +...+.. +...+.......++++.+.+|+.+..+..          . +...-++|+|||+|+..++.+..+       
T Consensus       110 l~~~lN~-n~~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~  188 (522)
T TIGR03799       110 LMVALNQ-NLVKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADG  188 (522)
T ss_pred             HHHHhcC-CcceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccc
Confidence            4443332 33345555677899999999998765310          0 112357789999998887766421       


Q ss_pred             -------------------CCCeEEEcCCCCcchHHHhhccCCCc---eeeeeccCCCCCccCChhhHHHhhc----cCc
Q 038416           96 -------------------PGANILIPRPGYPLYEIHAAGSNNNL---EARHYDLLPEKRWEVDLDGVEALAD----ENT  149 (387)
Q Consensus        96 -------------------~g~~vl~~~p~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~l~~~~~----~~~  149 (387)
                                         ++..|+++.-.|+++...+.  ..|+   +++.+|++  .++.+|+++|+++++    .++
T Consensus       189 ~~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~--~lglg~~~v~~vp~d--~~g~~d~~~L~~~i~~~~~~g~  264 (522)
T TIGR03799       189 DFKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAAD--VLGIGRDNLIAIKTD--ANNRIDVDALRDKCAELAEQNI  264 (522)
T ss_pred             cccccccccchhhhhhccCCceEEEECCCchHHHHHHHH--HcCCCcccEEEEEeC--CCCcCCHHHHHHHHHHHHHCCC
Confidence                               12468889999999998888  8887   67888875  345899999999885    355


Q ss_pred             eEEEEe--CCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCc-cccccCCCccEEEEecCcccccccc
Q 038416          150 VAIVII--NPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYV-PMGVFGSIVPVITLGSISKRWIVPG  226 (387)
Q Consensus       150 ~~v~l~--~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~s~sK~~~~~g  226 (387)
                      +.+.++  ..++.||.+-|   +++|+++|+++|+++++|.+|++...-..... .+..+.  .-..+..|.+|+++. .
T Consensus       265 ~~~~vvataGtt~tGaiDp---l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle--~aDSit~d~HK~l~~-P  338 (522)
T TIGR03799       265 KPLAIVGVAGTTETGNIDP---LDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIE--RADSVTIDAHKQLYV-P  338 (522)
T ss_pred             CcEEEEEEecCcCCCCcCC---HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCch--hCCEEEEChhhcCCc-C
Confidence            555444  55779999966   89999999999999999999986432111111 122221  112667799997433 3


Q ss_pred             cceEEEEeeCCCCcccchhHHHHHHh---hh---------hccCCcchH-HHHHHHHHhhhccHHHHHHHHHHHHHHHHH
Q 038416          227 WRLGWLVTSDPNGILQNSGFVDSIKG---CL---------NAASHPVTF-IQAAVPRIVDETNEAFFAKIIGLLKETADI  293 (387)
Q Consensus       227 ~r~G~i~~~~~~~~~~~~~~~~~~~~---~~---------~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  293 (387)
                      ..+|.++.+++.       ..+.+..   +.         ..+...+.. ....+...++......+.++.++..+++++
T Consensus       339 ~g~G~llvr~~~-------~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~  411 (522)
T TIGR03799       339 MGAGMVLFKDPA-------LMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKY  411 (522)
T ss_pred             cccEEEEEeCHH-------HHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            558999887632       2222221   00         000111111 112344445555567889999999999999


Q ss_pred             HHHHhhcCCCCCCCCCCCceEEEEEec
Q 038416          294 CYERIKEIPCITCPVKPQGAMFVMVKL  320 (387)
Q Consensus       294 ~~~~l~~~~~~~~~~~~~~g~~~~~~~  320 (387)
                      +.+.|++.|+++++..|.-+. +.+++
T Consensus       412 l~~~L~~~~~~el~~~p~l~i-v~Fr~  437 (522)
T TIGR03799       412 FADLIQQQPDFELVTEPELCL-LTYRY  437 (522)
T ss_pred             HHHHHhhCCCeEEecCCCccE-EEEEE
Confidence            999999999999775555543 34443

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=99.71  E-value=1.7e-14  Score=125.67  Aligned_cols=322  Identities=18%  Similarity=0.139  Sum_probs=205.5

Q ss_pred             CcHHHHHHHHHHhcCC--CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc-CCC-CeEE
Q 038416           26 DSTVAEDAVVDALRTA--HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA-RPG-ANIL  101 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~--~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~g-~~vl  101 (387)
                      .+|.+.+++.+++..-  +...|... -..++.+.+++.+      +-+-..+++++|+++|++++++... .-| -.++
T Consensus        67 chP~v~~a~~kQl~~l~H~t~~~~~~-pi~~~Ae~L~s~~------P~~l~~vfF~nsGsEANelal~mar~Yt~~~diI  139 (442)
T KOG1404|consen   67 CHPDVVAAAVKQLKKLYHTTSGYLNP-PIHDLAEALVSKL------PGDLKVVFFVNSGSEANELALKMARLYTGNLDII  139 (442)
T ss_pred             CChHHHHHHHHhhhhhEEeeccccCC-cHHHHHHHHHHhC------CCCceEEEEecCCchHHHHHHHHHHHhcCCceEE
Confidence            6788888888887541  22344432 2357777777776      4455678999999999999998753 222 4677


Q ss_pred             EcCCCCcchHHHhhccCCCceeeeeccCCC-------------CC-ccC---------ChhhHHHhh---ccCceEEEEe
Q 038416          102 IPRPGYPLYEIHAAGSNNNLEARHYDLLPE-------------KR-WEV---------DLDGVEALA---DENTVAIVII  155 (387)
Q Consensus       102 ~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~-------------~~-~~~---------~~~~l~~~~---~~~~~~v~l~  155 (387)
                      ....+|++...... +..+......+++..             .+ |+=         -.+++++.+   .+.+.+.++.
T Consensus       140 a~r~~YHG~t~~t~-glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafia  218 (442)
T KOG1404|consen  140 ARRNSYHGNTLYTL-GLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIA  218 (442)
T ss_pred             EeeccccCCchhhc-ccccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEe
Confidence            77888876543333 123332222111100             00 000         124455544   2355666666


Q ss_pred             CC-CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEE
Q 038416          156 NP-GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLV  233 (387)
Q Consensus       156 ~p-~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~  233 (387)
                      .+ +.-.|++ +|+.-+++..++|+++|.++|.||++++|...|    .+..++..+-+..|-|++|.. .+|+++|.++
T Consensus       219 EtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG----~~wgfe~h~v~PDIvTmAKgi-GnG~Pl~AVv  293 (442)
T KOG1404|consen  219 ETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTG----HMWGFESHGVVPDIVTMAKGI-GNGFPLGAVV  293 (442)
T ss_pred             ehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhcccccc----ccccccccCCCccHHHHHhhc-cCCCcceeee
Confidence            66 5556765 677789999999999999999999999988776    344555555556677999995 6779999999


Q ss_pred             eeCCCCcccchhHHHHHHhhh-h-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc----CCCCCCC
Q 038416          234 TSDPNGILQNSGFVDSIKGCL-N-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE----IPCITCP  307 (387)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~  307 (387)
                      ...        ++.+.+.+.. . .+++.+|.+.++..+.|+-.+++.+.++...+-   .++.+.|.+    .|.+-.+
T Consensus       294 tt~--------EIa~v~~~~~~~fnTyggnP~a~avg~aVL~Vikee~LqE~aa~vG---~yl~~~l~~l~d~h~iIGdV  362 (442)
T KOG1404|consen  294 TTP--------EIADVLNQKSSHFNTYGGNPVACAVGLAVLKVIKEENLQENAAEVG---SYLLEKLAALKDKHPIIGDV  362 (442)
T ss_pred             cCH--------HHHHHHHhccccccccCCCchhHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHhhcCCceeec
Confidence            875        8888887765 2 467888999888888888766666555544433   344444443    3433312


Q ss_pred             CCCCceEEEEEecCccc----ccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHH
Q 038416          308 VKPQGAMFVMVKLNVSM----LEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERI  376 (387)
Q Consensus       308 ~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l  376 (387)
                        ..-|.++-+.+-...    .|.. ....++.+-+++.|+++.-|..++  +.|||++  +.+++|++.+++..
T Consensus       363 --RG~GLm~GvE~V~dk~~~~pp~~-~~~~~i~~~cke~Gvlvg~g~i~G--~vfriaPPlciT~edi~f~~~~~  432 (442)
T KOG1404|consen  363 --RGRGLMLGVELVSDKSEPKPPAT-AEGAVIGEQCKELGVLVGKGGIHG--NVFRIAPPLCITKEDIDFAVEYF  432 (442)
T ss_pred             --ccceeEEEEEEecccCCCCCcch-HHHHHHHHHHHHhCeeeecccccc--eEEEecCCeeccHHHHHHHHHHH
Confidence              233556555542211    1111 123455566788999997776654  4899999  67999997666644

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=99.70  E-value=3.7e-14  Score=133.25  Aligned_cols=341  Identities=14%  Similarity=0.098  Sum_probs=183.8

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHH--HHHHHHhcCCCCCCCCC-CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAE--DAVVDALRTAHYNCYSP-TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQ   84 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~--~a~~~~~~~~~~~~y~~-~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~   84 (387)
                      +.+++..-|.......+ .+|.+.  +++++++.......... ...... ...+++.+.+..+ +-..+.++++++|++
T Consensus        38 ~~ylD~~~g~~~~~lGh-~~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~-~~~~~~v~f~~sGsE  114 (431)
T TIGR03251        38 RRYLDMFSFFASMALGM-NHPALVDDLAFRARLGAAAVNKPSNSDVYTVA-MARFVDTFARVLG-DPALPHLFFIEGGAL  114 (431)
T ss_pred             CChhhcccChhhcCCCC-CChhhhHHHHHHHHHHHhhhcccccCCCCCHH-HHHHHHHHHHhcC-CCCcCEEEEeCCcHH
Confidence            44556544432222222 556666  88888877532111111 112223 3334433333221 113468999999999


Q ss_pred             HHHHHHHhhcC--------C------CCeEEEcCCCCcchHHHhhccCCCce-ee--eecc--------C----C--CCC
Q 038416           85 AIEISLSVLAR--------P------GANILIPRPGYPLYEIHAAGSNNNLE-AR--HYDL--------L----P--EKR  133 (387)
Q Consensus        85 a~~~~~~~l~~--------~------g~~vl~~~p~~~~~~~~~~~~~~g~~-~~--~~~~--------~----~--~~~  133 (387)
                      |++.+++...+        .      +.+|+....+|++....+. +..|.. ..  ..+.        .    +  ...
T Consensus       115 Ave~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~al-s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  193 (431)
T TIGR03251       115 AVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTL-SLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPN  193 (431)
T ss_pred             HHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhh-hccCCccccccCCCCCCCccCCCCcccCCccccc
Confidence            99999988631        1      3679999999987654333 011211 00  0010        0    0  000


Q ss_pred             cc-------CChhhHHHhhc---cCceEEEEeCCCCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc
Q 038416          134 WE-------VDLDGVEALAD---ENTVAIVIINPGNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP  202 (387)
Q Consensus       134 ~~-------~~~~~l~~~~~---~~~~~v~l~~p~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~  202 (387)
                      ..       -+++++++.+.   .+.-++++...+...|.. .|++.+++|.++|++||+++|+||+++++...|..+..
T Consensus       194 ~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~  273 (431)
T TIGR03251       194 LDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAY  273 (431)
T ss_pred             cchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHH
Confidence            00       12334445553   234444544446667765 67788999999999999999999999988766542211


Q ss_pred             -ccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHH-Hh--hhhccCCcchHHHHHHHHHhhhccHH
Q 038416          203 -MGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSI-KG--CLNAASHPVTFIQAAVPRIVDETNEA  278 (387)
Q Consensus       203 -~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~l~~~~~~  278 (387)
                       ...+.++  ++   +++|.+  +.  .|++...+   +.   ++.+.. ..  ....+++.++.+..++.+.|+...+.
T Consensus       274 ~~~gv~PD--i~---~~gK~~--~~--~g~~~~~~---i~---~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~  338 (431)
T TIGR03251       274 QQLGVQPD--IV---AFGKKT--QV--CGIMAGRR---VD---EVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEEE  338 (431)
T ss_pred             HhcCCCCC--EE---EecccC--cc--ceEEecch---HH---HhhhhcccCccccCCCCCCCHHHHHHHHHHHHHHHhc
Confidence             1122222  23   478984  21  35554321   00   111111 10  11234667888888888887754333


Q ss_pred             HH-HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCe
Q 038416          279 FF-AKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNW  357 (387)
Q Consensus       279 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~  357 (387)
                      .+ ++..+...+.++.+.+..++.+++... ....|.++.+.++..     .....+...+ .++||.+.+..    .+.
T Consensus       339 ~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~-vrg~G~~~~i~~~~~-----~~~~~~~~~l-~~~Gvl~~~~g----~~~  407 (431)
T TIGR03251       339 RLVDNARVQGAHLLARLHELAAEFPHLVSN-PRGRGLMCAFDLPST-----ADRDEVIRQL-YREGVLLLGCG----ERS  407 (431)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCccceec-ccccceeEEEEeCCH-----HHHHHHHHHH-HhCCeEEecCC----CCe
Confidence            32 344444444444554433445423212 223466767777531     0123455555 56799998753    366


Q ss_pred             EEEEe--eCChHhHHHHHHHHHH
Q 038416          358 LRIAF--AAEPATLEDGLERIKA  378 (387)
Q Consensus       358 ~Ri~~--~~~~e~~~~~~~~l~~  378 (387)
                      +|+++  .+++++++++++.|.+
T Consensus       408 lr~~P~l~~t~~eid~~l~~l~~  430 (431)
T TIGR03251       408 IRFRPPLTVTREEIDAAIDAIRR  430 (431)
T ss_pred             EEEECCccCCHHHHHHHHHHHHh
Confidence            89888  4689999999999865

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PRK15029 arginine decarboxylase; Provisional

Probab=99.69  E-value=3.7e-14  Score=138.46  Aligned_cols=229  Identities=10%  Similarity=0.022  Sum_probs=145.5

Q ss_pred             cHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCC
Q 038416           52 VPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPE  131 (387)
Q Consensus        52 ~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~  131 (387)
                      ..+.++.+|+.++       ....-++++|+|.++.+++.+++++||+|+++.+||-+....+.  ..|+.+++++... 
T Consensus       207 I~eAq~~aA~~fg-------A~~t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al~--L~ga~Pvyl~P~~-  276 (755)
T PRK15029        207 FGESEKYAARVFG-------ADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLI--LTGAKPVYMVPSR-  276 (755)
T ss_pred             HHHHHHHHHHHhC-------CCcEEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHH--HcCCeEEEecccc-
Confidence            4556666666662       23466789999999999999999999999999999999999999  9999998885322 


Q ss_pred             CCc----cCC-----hhhHHHhhcc--Cce--------EEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccc
Q 038416          132 KRW----EVD-----LDGVEALADE--NTV--------AIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNH  192 (387)
Q Consensus       132 ~~~----~~~-----~~~l~~~~~~--~~~--------~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~  192 (387)
                      +.+    .++     ++.+++++..  ..+        ++++++|+. -|++++   +++|+++|++++++|++||+|+.
T Consensus       277 ~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~d---i~~I~~~~h~~~~~llvDEAhGa  352 (755)
T PRK15029        277 NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYN---AKEAQDLLEKTSDRLHFDEAWYG  352 (755)
T ss_pred             cccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeC---HHHHHHHHHhcCCeEEEECcccc
Confidence            222    234     8888888754  234        899999974 788866   89999999999999999999985


Q ss_pred             c-ccCCCCCcccccc-----C-CCccEEEEecCcccccccccceEEEEeeCCCC-cccchhHHHHHHhhhh--ccCCcch
Q 038416          193 L-AFGSTPYVPMGVF-----G-SIVPVITLGSISKRWIVPGWRLGWLVTSDPNG-ILQNSGFVDSIKGCLN--AASHPVT  262 (387)
Q Consensus       193 ~-~~~~~~~~~~~~~-----~-~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~  262 (387)
                      + .|.. .+.....+     . ....++++.|.||.  ++++.-|.++.-+... ..    -.++++....  .+.+|+-
T Consensus       353 h~~F~~-~~p~~sa~~~~~~~~~Gad~~vvqStHKt--L~alTQaS~LHv~~~~~~i----d~~r~~~~l~~~qSTSPSY  425 (755)
T PRK15029        353 YARFNP-IYADHYAMRGEPGDHNGPTVFATHSTHKL--LNALSQASYIHVREGRGAI----NFSRFNQAYMMHATTSPLY  425 (755)
T ss_pred             ccccCc-cccccccccccccccCCCceEEEEchhhc--ccchhhhhhheeCCCcccc----CHHHHHHHHHHHcCCCcHH
Confidence            3 3432 22211222     1 11235899999998  5666555554432111 11    1234544433  2344444


Q ss_pred             HHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcC
Q 038416          263 FIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEI  301 (387)
Q Consensus       263 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  301 (387)
                      +..+.+..+........-.+..++..+.+..+++.+.++
T Consensus       426 ~LmASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~~l~~~  464 (755)
T PRK15029        426 AICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARL  464 (755)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence            444433333322111122333444444555555555544

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.68  E-value=1.5e-15  Score=138.35  Aligned_cols=234  Identities=16%  Similarity=0.183  Sum_probs=143.8

Q ss_pred             cHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCC
Q 038416           52 VPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPE  131 (387)
Q Consensus        52 ~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~  131 (387)
                      ..+.++.+|+.++       .....++++|+|.++.+++.+++++||+|+++..+|-+....+.  ..|+.+++++.. .
T Consensus        68 I~eAe~~aA~~fG-------Ad~t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~ali--l~ga~Pvyi~p~-~  137 (417)
T PF01276_consen   68 IKEAEELAARAFG-------ADKTFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYNALI--LSGAIPVYIPPE-D  137 (417)
T ss_dssp             HHHHHHHHHHHHT-------ESEEEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHHHHH--HHTEEEEEEEEE-E
T ss_pred             HHHHHHHHHHhcC-------CCeEEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHH--HcCCeEEEecCC-c
Confidence            4566777777773       23456788999999999999999999999999999999998888  999999888654 2


Q ss_pred             CCc----cCCh-----hhHHHhhcc--CceE---EEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeeccccccc-ccC
Q 038416          132 KRW----EVDL-----DGVEALADE--NTVA---IVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHL-AFG  196 (387)
Q Consensus       132 ~~~----~~~~-----~~l~~~~~~--~~~~---v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~-~~~  196 (387)
                      +.+    .+++     +.++++++.  ..+.   +++++|+. -|++++   +++|+++|++++++|++||+|+.. .|.
T Consensus       138 ~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY-~Gv~~d---i~~I~~~~h~~~~~llvDEAhGah~~F~  213 (417)
T PF01276_consen  138 NEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY-YGVCYD---IKEIAEICHKHGIPLLVDEAHGAHFGFH  213 (417)
T ss_dssp             -TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T-TSEEE----HHHHHHHHCCTECEEEEE-TT-TTGGCS
T ss_pred             cccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC-CeEEEC---HHHHHHHhcccCCEEEEEccccccccCC
Confidence            222    3466     888888864  3344   89999974 788866   899999999999999999999953 343


Q ss_pred             CCCCccccccC----CCccEEEEecCcccccccccc-eEEEEeeCCCCcccchhHHHHHHhhhh--ccCCcchHHHHHHH
Q 038416          197 STPYVPMGVFG----SIVPVITLGSISKRWIVPGWR-LGWLVTSDPNGILQNSGFVDSIKGCLN--AASHPVTFIQAAVP  269 (387)
Q Consensus       197 ~~~~~~~~~~~----~~~~~~~i~s~sK~~~~~g~r-~G~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  269 (387)
                       ..+.+...+.    .+..++++.|++|.  ++++. .+++...+... .    -.+++.+...  .+.+|+-+..+.+.
T Consensus       214 -~lp~~a~~~gad~~~~~~~~vvqS~HKt--L~altQts~lh~~~~~~-v----~~~~~~~~l~~~~TTSPSY~lmASlD  285 (417)
T PF01276_consen  214 -PLPRSALALGADRPNDPGIIVVQSTHKT--LPALTQTSMLHVKGDRI-V----DHERVNEALSMHQTTSPSYPLMASLD  285 (417)
T ss_dssp             -GGGTTCSSTTSS-CTSBEEEEEEEHHHH--SSS-TT-EEEEEETCCC-T----THHHHHHHHHHHS-SS--HHHHHHHH
T ss_pred             -CCccchhhccCccccccceeeeechhhc--ccccccceEEEecCCCc-c----cHHHHHHHHHHHcCCChHHHHHHHHH
Confidence             2222222222    13457999999999  45554 45555554210 1    2344444332  24455555444444


Q ss_pred             HHhhhccHHHHHHHHHHHHHHHHHHHHHh---hcCCCCCCC
Q 038416          270 RIVDETNEAFFAKIIGLLKETADICYERI---KEIPCITCP  307 (387)
Q Consensus       270 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~  307 (387)
                      .+........=++..++..++++.+++.+   ++++.+.++
T Consensus       286 ~a~~~m~~~~G~~l~~~~i~~a~~~R~~i~~~~~~~~~~~~  326 (417)
T PF01276_consen  286 VARAQMEEEEGRELLEEAIELAEEFRKKINRLNDIWGFKVL  326 (417)
T ss_dssp             HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHCCT-SSEES
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCceEecC
Confidence            44332212222334444445555555555   555555544

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.67  E-value=4.5e-14  Score=132.69  Aligned_cols=335  Identities=13%  Similarity=0.061  Sum_probs=179.8

Q ss_pred             cccCCCCCCCCCCCCCC-CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLS-DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      .++++.-|.-...  ++ .+|.+.+|+++++....  .+...   ...+-.+++.+.+..+   ..+.+++++++++|++
T Consensus        49 ~ylD~~~g~~~~~--lGh~~p~v~~Ai~~q~~~~~--~~~~~---~~~~~~la~~l~~~~p---~~~~v~f~~sGseA~e  118 (431)
T PRK06209         49 EYIEYGMGLRAVG--LGHAYPPVVEAVREALQDGC--NFTRP---SAIELDAAESFLELID---GADMVKFCKNGSDATS  118 (431)
T ss_pred             EEEEccccccchh--cCCCCHHHHHHHHHHHHhCc--CCCCC---CHHHHHHHHHHHHhCC---ccceEEEecCHHHHHH
Confidence            4555544432122  33 57889999999988643  23221   1222233444433221   2368999999999999


Q ss_pred             HHHHhhc-CCC-CeEEEc-CCCCcchHHHhhc---cCCCce--eeeeccCCCCCccCChhhHHHhhcc--CceEEEEeCC
Q 038416           88 ISLSVLA-RPG-ANILIP-RPGYPLYEIHAAG---SNNNLE--ARHYDLLPEKRWEVDLDGVEALADE--NTVAIVIINP  157 (387)
Q Consensus        88 ~~~~~l~-~~g-~~vl~~-~p~~~~~~~~~~~---~~~g~~--~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~v~l~~p  157 (387)
                      .+++... -.| .+|+.. ..+|+++......   ...+..  .........   .-|++++++.++.  +..+.+++.|
T Consensus       119 ~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~d~~~l~~~l~~~~~~~aavi~Ep  195 (431)
T PRK06209        119 AAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFR---YNDIASLEALFEDHPGRIACVILEP  195 (431)
T ss_pred             HHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhccccccC---CCCHHHHHHHHHhCCCCEEEEEEcc
Confidence            9999753 123 456554 3344332111000   011110  000000000   1167888887753  3445566666


Q ss_pred             CCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCC
Q 038416          158 GNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDP  237 (387)
Q Consensus       158 ~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~  237 (387)
                      .  .|...+.+.+++|.++|++||+++|+||++.++.+.+..........++     +.+++|.++ .|+++|.+++++ 
T Consensus       196 v--~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~~g~~~~~gv~PD-----i~t~gK~lg-gG~p~~av~~~~-  266 (431)
T PRK06209        196 A--TADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHMRGAQKLYGIVPD-----LSCFGKALG-NGFAVSALAGKR-  266 (431)
T ss_pred             c--cCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCcchhhHHhCCCcc-----eeeehhhhc-CCcccEEEEEHH-
Confidence            4  2447778899999999999999999999998765432111111122222     457899975 568899999975 


Q ss_pred             CCcccchhHHHH--HHh---h----hhccCCcchHHHHHHHHHhhhccHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 038416          238 NGILQNSGFVDS--IKG---C----LNAASHPVTFIQAAVPRIVDETNEAF-FAKIIGLLKETADICYERIKEIPCITCP  307 (387)
Q Consensus       238 ~~~~~~~~~~~~--~~~---~----~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~  307 (387)
                             ++.+.  +..   .    ...++++++...+++.+.|+...++. +++..+.....++.+.+...+++ +...
T Consensus       267 -------~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~~~~~~-~~~~  338 (431)
T PRK06209        267 -------EYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQGAKLAAGVNEAAAEHG-LQDH  338 (431)
T ss_pred             -------HHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhCC-CCeE
Confidence                   56654  211   1    12345567777777777776543322 33333333334444433333342 2211


Q ss_pred             CCCCceEEEEEec---CcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          308 VKPQGAMFVMVKL---NVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       308 ~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                       ....|.+..+.+   .....+...-...+..++ .++|+.+.|         ++|+..+++++++++++.+.+++++.+
T Consensus       339 -vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~p~---------l~is~~ht~~dId~~l~~l~~~l~~~~  407 (431)
T PRK06209        339 -VRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQET-IRRGVLMPS---------LVVSYAHGDADIERTIDAVHGALGVYR  407 (431)
T ss_pred             -EEeecceEEEEEecCCcccCCcHHHHHHHHHHH-HHCCccccc---------ccccccCCHHHHHHHHHHHHHHHHHHH
Confidence             111122222211   110000000011344444 556987622         567767799999999999999998764

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.67  E-value=1.1e-13  Score=137.27  Aligned_cols=331  Identities=17%  Similarity=0.135  Sum_probs=196.5

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC----------
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR----------   95 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~----------   95 (387)
                      .+|++.+|+++++.+-  .++....-..+....+|+.+.+..+ .-.-+.|+++++|++|++.+++...+          
T Consensus       383 ~~p~I~~Ai~~Qa~rl--~hv~~~~~~hepa~~LAe~L~~~~~-~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~~~  459 (817)
T PLN02974        383 LQPELARAVAYAAGRY--GHVMFPENVHEPALRAAELLLGGPG-KGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLE  459 (817)
T ss_pred             CCHHHHHHHHHHHhhC--CccccCccCCHHHHHHHHHHHhccC-CCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCCCc
Confidence            5899999999999762  2222211223445566666654111 00135899999999999999887521          


Q ss_pred             -----------CCCeEEEcCCCCcchHHHhhccCCCc---------e-----eeeeccC-------------CCC--C--
Q 038416           96 -----------PGANILIPRPGYPLYEIHAAGSNNNL---------E-----ARHYDLL-------------PEK--R--  133 (387)
Q Consensus        96 -----------~g~~vl~~~p~~~~~~~~~~~~~~g~---------~-----~~~~~~~-------------~~~--~--  133 (387)
                                 ...+|+....+|++....+. +..+.         .     ...++.+             +..  +  
T Consensus       460 ~~~~~~~~~~~~r~kIIa~~gsYHG~T~GAm-s~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~  538 (817)
T PLN02974        460 NSGNEKRGGDLIELKVLALDGSYHGDTLGAM-EAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGL  538 (817)
T ss_pred             ccccccccccCCCCEEEEECCCcCCCCHHHH-hhCCchhhhcccccccccCCCcccCCCccccccccccccCCccccccc
Confidence                       12469999999987443333 01110         0     0001000             000  0  


Q ss_pred             ------cc-----CC------------hhhHHHhhc-------cCceEEEEeCC--CCCcccc-CCHHHHHHHHHHHHhc
Q 038416          134 ------WE-----VD------------LDGVEALAD-------ENTVAIVIINP--GNPCGNV-FSYQHLQKIARTARNL  180 (387)
Q Consensus       134 ------~~-----~~------------~~~l~~~~~-------~~~~~v~l~~p--~nptG~~-~~~~~~~~l~~~~~~~  180 (387)
                            |.     .+            .+.+++.++       ++..+.++..|  +...|.. ++++.++++.++|++|
T Consensus       539 ~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~  618 (817)
T PLN02974        539 EGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSR  618 (817)
T ss_pred             cccccccccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHh
Confidence                  00     00            134555553       23455666777  5667876 4677799999999999


Q ss_pred             CcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccc-cceEEEEeeCCCCcccchhHHHHHHh------h
Q 038416          181 GIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGFVDSIKG------C  253 (387)
Q Consensus       181 ~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~~~~------~  253 (387)
                      |+++|.||++.+|+..|..+.. ..++....   |-.++|.+ .+| +++|.+++++        ++.+.+..      .
T Consensus       619 gilLI~DEV~TGfGRtG~~fa~-e~~gv~PD---Ii~~gKgL-tgG~~Plaa~l~~~--------~I~~~f~~~~~~~~~  685 (817)
T PLN02974        619 KIPVIFDEVFTGLWRLGVESAW-ELLGCKPD---IACYAKLL-TGGLVPLAATLATE--------EVFEAFRGPSKLDAL  685 (817)
T ss_pred             CCEEEEeecccCCCcccchhhH-HhcCCCCC---EEeecccc-cCCCCccEEEEEcH--------HHHHhhccccccCCc
Confidence            9999999999999877754332 22222222   34677995 466 6999999976        67776642      1


Q ss_pred             -hhccCCcchHHHHHHHHHhhhccHH-HHHHHHHHHHHHHHHHH----HHhhcCCCCCCCCCCCceEEEEEecCcccc-c
Q 038416          254 -LNAASHPVTFIQAAVPRIVDETNEA-FFAKIIGLLKETADICY----ERIKEIPCITCPVKPQGAMFVMVKLNVSML-E  326 (387)
Q Consensus       254 -~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~-~  326 (387)
                       ...+++.++++++++.+.|+..++. ......+...+..+.+.    +.+.++|.+..+  ..-|.++.+.+..... .
T Consensus       686 ~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~V--Rg~Gl~~~iel~~~~~~~  763 (817)
T PLN02974        686 LHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPNVERV--VSLGTVLALELDAEGSGS  763 (817)
T ss_pred             ccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEE--EeeeeEEEEEEecCCccc
Confidence             1256788999999998888764432 22222333333333333    344445544322  3346676666643211 0


Q ss_pred             CCC--cHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHH
Q 038416          327 DIG--DDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFC  380 (387)
Q Consensus       327 ~~~--~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~  380 (387)
                      ++.  ....+...+..++|+.+.|.     .+.+|+.+  .+++++++++++.|.+.+
T Consensus       764 ~~~~~~a~~v~~~~~~~~Gl~~r~~-----Gnvi~l~pP~~i~~e~l~~~~~~l~~~~  816 (817)
T PLN02974        764 GYSSLYARSVVRRLRREDGIYARPL-----GNVVYLMCGPTTSPETCTRLLRKVYRRL  816 (817)
T ss_pred             ccchHHHHHHHHHHHHhCCEEEEec-----CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            110  12234444432789999884     36788765  468999999999998765

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.66  E-value=2.7e-17  Score=144.81  Aligned_cols=191  Identities=16%  Similarity=0.153  Sum_probs=134.1

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCC
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRP  105 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p  105 (387)
                      ++|.+.++|.++...+.  .|+......+|++.+++++        ..+..++++++|.++.+++++++++++.|++..+
T Consensus         7 ~~~~m~~a~~~a~~gd~--~Yg~D~~~~~l~~~i~~l~--------g~e~a~f~~sGT~An~~al~~~~~~~~~vi~~~~   76 (290)
T PF01212_consen    7 PTPAMLEAMAAANVGDD--AYGEDPTTARLEERIAELF--------GKEAALFVPSGTMANQLALRAHLRPGESVICADT   76 (290)
T ss_dssp             S-HHEEHHHHHTTSB-C--CTTSSHHHHHHHHHHHHHH--------TSSEEEEESSHHHHHHHHHHHHHHTTEEEEEETT
T ss_pred             CCHHHHHHHHccccCCc--ccCCChhHHHHHHHHHHHc--------CCCEEEEeCCCChHHHHHHHHHHhcCCceecccc
Confidence            78899999966665543  5888778899999999999        4467789999999999999999999999999999


Q ss_pred             CCcchHHH---hhccCCCceeeeeccCCCCCccCChhhHHHhhcc------CceEEEEeCCCCC-ccccCCHHHHHHHHH
Q 038416          106 GYPLYEIH---AAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE------NTVAIVIINPGNP-CGNVFSYQHLQKIAR  175 (387)
Q Consensus       106 ~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~np-tG~~~~~~~~~~l~~  175 (387)
                      +|....+.   ..  ..|.++..++-.  ++..+++++|++.+..      ++++|.+.+|+|. .|+++|.+++++|.+
T Consensus        77 aHi~~~E~ga~~~--~~G~~~~~l~~~--~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~  152 (290)
T PF01212_consen   77 AHIHFDETGAIEE--LSGAKLIPLPSD--DDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISE  152 (290)
T ss_dssp             EHHHHSSTTHHHH--HTTCEEEEEBEC--TGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHH
T ss_pred             ceeeeeccchhhH--hcCcEEEECCCc--ccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHH
Confidence            88643322   23  478888887753  3257999999998854      5789999999884 599999999999999


Q ss_pred             HHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEee
Q 038416          176 TARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTS  235 (387)
Q Consensus       176 ~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~  235 (387)
                      +|+++|++++.|.+--.-... ....++..+..... .+..|++|.+++++   |.+++-
T Consensus       153 ~a~~~gl~lhmDGARl~~a~~-~~~~~~~e~~~~~D-~v~~~~tK~~g~~~---Gavl~~  207 (290)
T PF01212_consen  153 LAREHGLPLHMDGARLANAAA-ALGVSLAEIAAGAD-SVSFGGTKNGGAPG---GAVLAG  207 (290)
T ss_dssp             HHHHHT-EEEEEETTHHHHHC-HHHHHHHHHHTTSS-EEEEETTSTT-SSS---EEEEEE
T ss_pred             HHHhCceEEEEehhhHHHhhh-cccccHHHHhhhCC-EEEEEEEccccccc---ceEEEe
Confidence            999999999999885421110 00011222222222 44456999876665   555443

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=99.65  E-value=5.5e-14  Score=131.69  Aligned_cols=341  Identities=13%  Similarity=0.060  Sum_probs=183.6

Q ss_pred             ccccCCCCCCCCCCCCCC-CcHHHHHHHHHH-hcCC--CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChH
Q 038416            8 ETRHSPWPRRPLGVSLLS-DSTVAEDAVVDA-LRTA--HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCS   83 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~-~~~~v~~a~~~~-~~~~--~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~   83 (387)
                      ..++|..-|....  .++ .+|.+.++++++ ....  +...+.. ....++.+.+++.+....  +..-+.++++++++
T Consensus        58 ~~ylD~~sg~~~~--~lGh~~p~i~~Ai~~q~~~~~l~~~~~~~~-~~~~~la~~l~~~l~~~~--p~~~~~v~f~~SGs  132 (464)
T TIGR00699        58 NRLLDLYSQISSI--PIGYNNPALLKAAQSPEMATTLINRPALGN-FPSKDWAKILKEGILKVA--PKGQDQVWTGMSGS  132 (464)
T ss_pred             CEEEEccCCHhhh--cCCCCCHHHHHHHHHHHHHHhhcccccCCc-HHHHHHHHHHHHhHHhhC--CCCcCEEEEeCCcH
Confidence            3556654443211  123 678889999874 2221  1111221 112334444433222222  12336899999999


Q ss_pred             HHHHHHHHhhcC--------------------------CC---CeEEEcCCCCcchHHHhhccCCCce-----------e
Q 038416           84 QAIEISLSVLAR--------------------------PG---ANILIPRPGYPLYEIHAAGSNNNLE-----------A  123 (387)
Q Consensus        84 ~a~~~~~~~l~~--------------------------~g---~~vl~~~p~~~~~~~~~~~~~~g~~-----------~  123 (387)
                      +|++.+++....                          .|   .+|+....+|++....+. +..+..           .
T Consensus       133 EAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~al-s~t~~~~~~~~~~~~~~~  211 (464)
T TIGR00699       133 DANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSL-STTRSKPIHKLDIPAFDW  211 (464)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHH-HhcCCccccccCCCCCCc
Confidence            999999998631                          11   279999999987644333 011111           1


Q ss_pred             eeeccCCC-CCc-----------cCChhhHHHhhcc--CceEEEEeCC-CCCccccC-CHHHHHHHHHHHHhcCcEEeec
Q 038416          124 RHYDLLPE-KRW-----------EVDLDGVEALADE--NTVAIVIINP-GNPCGNVF-SYQHLQKIARTARNLGIIVIAD  187 (387)
Q Consensus       124 ~~~~~~~~-~~~-----------~~~~~~l~~~~~~--~~~~v~l~~p-~nptG~~~-~~~~~~~l~~~~~~~~~~li~D  187 (387)
                      ..+|.+.. ..+           .-+++.++++++.  +..+.++..| +...|... +++.++++.++|++||+++|+|
T Consensus       212 ~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~D  291 (464)
T TIGR00699       212 PQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVD  291 (464)
T ss_pred             eecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence            11121110 000           0134556666643  2334455555 66678765 6788999999999999999999


Q ss_pred             ccccccccCCCCCcc-ccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHh-hhhccCCcchHHH
Q 038416          188 EVYNHLAFGSTPYVP-MGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKG-CLNAASHPVTFIQ  265 (387)
Q Consensus       188 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  265 (387)
                      |++.++...|..+.. ...+.....   +.+++|.++..|    +++..+         ....... ....++..++.+.
T Consensus       292 EV~tGfGrtG~~fa~e~~gv~~~PD---i~t~gK~lg~gG----~~~~~~---------~~~~~~~~~~~~T~~gnp~~~  355 (464)
T TIGR00699       292 EVQTGVGATGKFWAHEHWNLDDPPD---MVTFSKKFQTAG----YFFHDP---------AFRPNKPYRQFNTWMGDPSRA  355 (464)
T ss_pred             eeeeCCCCCcchhHHHhcCCCCCCC---EEEehhhhccCC----ccccch---------hccCCCCcccccCCCCCHHHH
Confidence            999988665542221 111220111   346789864444    333321         1111111 1224567788888


Q ss_pred             HHHHHHhhhccHHHHHHHH-HHHHHHHHHHHHHhhcCC-CCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcC
Q 038416          266 AAVPRIVDETNEAFFAKII-GLLKETADICYERIKEIP-CITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEES  343 (387)
Q Consensus       266 ~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g  343 (387)
                      +++.+.|+...++.+-+.. +.-...++.+.+..+++| .+..+.....|.++-+.++..     .....+...+ .++|
T Consensus       356 aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~~-----~~~~~i~~~~-~~~G  429 (464)
T TIGR00699       356 LILREIIQEIKRKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPDE-----AKRDKLLKKA-RNNG  429 (464)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecCCH-----HHHHHHHHHH-HHCC
Confidence            8888777654333222222 222233333333323354 222121114566766666421     0123455544 5669


Q ss_pred             eEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHH
Q 038416          344 VIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFC  380 (387)
Q Consensus       344 i~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~  380 (387)
                      +.+.+.    ..+.+|+.+  .+++++++.++++|.+++
T Consensus       430 vl~~~~----g~~~ir~~Ppl~it~~eid~~~~~l~~~~  464 (464)
T TIGR00699       430 VNIGGC----GVKAIRLRPMLVFQKHHADIFLEIISKII  464 (464)
T ss_pred             cEEecC----CCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            998764    147899999  468999999999998763

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.65  E-value=6.2e-14  Score=128.64  Aligned_cols=282  Identities=15%  Similarity=0.098  Sum_probs=177.8

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCC-----CCCEEEcCChHHHHHHHHHhhcC----
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLS-----PEDVYLTLGCSQAIEISLSVLAR----   95 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~-----~~~i~~~~g~~~a~~~~~~~l~~----   95 (387)
                      +.+..+...+....-+.+...+...+...++++.+.+|+.+.+|.+..     ...=++|+|+|+++..++.+..+    
T Consensus        50 ~~~~~i~~~~l~~~~n~n~~~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~  129 (373)
T PF00282_consen   50 PSPASILADLLASALNQNGFTWEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALP  129 (373)
T ss_dssp             -CHHHHHHHHHHHHHT-BTTSTTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhh
Confidence            344454444444444444545655556789999999999998887621     24568899999999888866531    


Q ss_pred             ----CC------CeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc---C--ce-EEEEeCCCC
Q 038416           96 ----PG------ANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE---N--TV-AIVIINPGN  159 (387)
Q Consensus        96 ----~g------~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---~--~~-~v~l~~p~n  159 (387)
                          .|      -.|++.+-+|+++...+.  ..|++++.+|+++  ++.+|+++|+++++.   +  +. +|+.+..+.
T Consensus       130 ~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~--~lGlg~~~I~~~~--~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt  205 (373)
T PF00282_consen  130 RSKAKGVEEIPKPVIYVSEQAHYSIEKAAR--ILGLGVRKIPTDE--DGRMDIEALEKALEKDIANGKTPFAVVATAGTT  205 (373)
T ss_dssp             HHHHHTTTHCSSEEEEEETTS-THHHHHHH--HTTSEEEEE-BBT--TSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-T
T ss_pred             hhhhcccccccccccccccccccHHHHhcc--eeeeEEEEecCCc--chhhhHHHhhhhhcccccccccceeeeccCCCc
Confidence                12      256778889999999999  9999999999865  557999999998753   2  23 455566788


Q ss_pred             CccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCCccEEEEecCcccccccccceEEEEeeCCC
Q 038416          160 PCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPN  238 (387)
Q Consensus       160 ptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~  238 (387)
                      .+|.+   +++++|+++|+++++|+++|.+|++..+-...... ...+..- . =+..+++|+++ ....+|+++.+++.
T Consensus       206 ~~Ga~---D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~a-d-Sit~d~HK~l~-~P~~~~~~l~r~~~  279 (373)
T PF00282_consen  206 NTGAI---DPLEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERA-D-SITIDPHKWLG-VPYGCGVLLVRDKS  279 (373)
T ss_dssp             TTSBB----SHHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGE-S-EEEEETTTTTS--SSS-EEEEESSGG
T ss_pred             ccccc---cCHHHHhhhccccceeeeecccccccccccccccccccccccc-c-ccccchhhhhc-CCccceeEEeeccc
Confidence            89999   88999999999999999999999983322222222 1122211 1 23347999964 44789999998744


Q ss_pred             Cccc----chhHHHHH-------HhhhhccCCcch-HHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 038416          239 GILQ----NSGFVDSI-------KGCLNAASHPVT-FIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITC  306 (387)
Q Consensus       239 ~~~~----~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  306 (387)
                      .+..    +++++...       ......+...+. .....+-..++..+.+.+.+..++..++++++.+.|++.+++++
T Consensus       280 ~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el  359 (373)
T PF00282_consen  280 DLRDAFSINADYLGNDDRESDESYDYGDYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFEL  359 (373)
T ss_dssp             GHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEE
T ss_pred             chHHHhccChhhhcccccccccccccccccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence            2110    01111100       000011112222 12222333344455688899999999999999999999988997


Q ss_pred             CCCCCceEEE
Q 038416          307 PVKPQGAMFV  316 (387)
Q Consensus       307 ~~~~~~g~~~  316 (387)
                      +..|.-+..+
T Consensus       360 ~~~~~~~~vc  369 (373)
T PF00282_consen  360 VNEPDLNIVC  369 (373)
T ss_dssp             SSTTSSSEEE
T ss_pred             EcCCCceEEE
Confidence            7656655443

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.65  E-value=5.7e-13  Score=134.37  Aligned_cols=307  Identities=16%  Similarity=0.089  Sum_probs=190.8

Q ss_pred             CcHHHHHHHHHHHhhcCCCCCCCCCEEEcC-ChHHHHHHHHHhh----cCCCC----eEEEcCCCCcchHHHhhccCCCc
Q 038416           51 GVPSARRGIADYLNRDLPYKLSPEDVYLTL-GCSQAIEISLSVL----ARPGA----NILIPRPGYPLYEIHAAGSNNNL  121 (387)
Q Consensus        51 ~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~-g~~~a~~~~~~~l----~~~g~----~vl~~~p~~~~~~~~~~~~~~g~  121 (387)
                      |..++...+.+|+.+..|.    +++.+.. +++++..+.+.++    .++|+    +|+++...|++....+.  ..|+
T Consensus       539 G~l~~i~e~q~~l~eltG~----d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~--~~G~  612 (954)
T PRK05367        539 GYRELIDQLEAWLAEITGY----DAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAV--MAGM  612 (954)
T ss_pred             HHHHHHHHHHHHHHHHHCC----CCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHH--HCCC
Confidence            4556777777777776553    3566655 4555553433332    24554    59999999988888888  8999


Q ss_pred             eeeeeccCCCCCccCChhhHHHhhcc---CceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCC
Q 038416          122 EARHYDLLPEKRWEVDLDGVEALADE---NTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGST  198 (387)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~  198 (387)
                      +++.++.+.  +..+|+++|++++++   ++.+|++++|++-++...+   +++|+++|+++|+++++|.++......  
T Consensus       613 ~vv~v~~d~--~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~---I~eI~~i~h~~G~~v~VDgA~~~al~~--  685 (954)
T PRK05367        613 KVVVVACDE--NGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEET---IREICEIVHEHGGQVYLDGANMNAQVG--  685 (954)
T ss_pred             EEEEECCCC--CCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCC---HHHHHHHHHHcCCEEEEECcChhhccC--
Confidence            999998853  347899999999865   3567788888875433334   899999999999999999999742211  


Q ss_pred             CCccccccCCCccEEEEecCccccc----ccccceEEEEeeCCCCcccchhHHHHHHhh------h---hccCCcchH--
Q 038416          199 PYVPMGVFGSIVPVITLGSISKRWI----VPGWRLGWLVTSDPNGILQNSGFVDSIKGC------L---NAASHPVTF--  263 (387)
Q Consensus       199 ~~~~~~~~~~~~~~~~i~s~sK~~~----~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~--  263 (387)
                       ......+..|   +++.|.+|+|+    .+|..+|.+.+++.        +...+-..      .   ......++.  
T Consensus       686 -l~~pg~~GAD---i~~~s~HK~f~~P~G~GGPg~G~l~vr~~--------l~p~lpg~~v~~~~~~~~~g~v~ta~~g~  753 (954)
T PRK05367        686 -LARPGDIGAD---VSHLNLHKTFCIPHGGGGPGVGPIGVKAH--------LAPFLPGHPVQIAGGETGIGAVSAAPFGS  753 (954)
T ss_pred             -CCChhhcCCC---EEEecCcccCCCCcCCCCCceEEEeeccc--------ccccCCCCccCcCCCCCCcCcchhHHHHH
Confidence             1112223333   88889999975    34455888887641        11111100      0   000111222  


Q ss_pred             --HHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCc--eEEEEEecCcccccCCCcHHHHHHHHH
Q 038416          264 --IQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQG--AMFVMVKLNVSMLEDIGDDLEFCLKLA  339 (387)
Q Consensus       264 --~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ll  339 (387)
                        ....+..++...+.+.+.+..+....+++++.+.|++...+.+. .|.+  ..-+.+++.....+...+..++..+| 
T Consensus       754 al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~~~~~~~-~~~~~~~~e~i~~~~~~~~~~g~~~~di~krL-  831 (954)
T PRK05367        754 ASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDHYPVLYT-GANGRVAHECILDLRPLKESTGITVDDIAKRL-  831 (954)
T ss_pred             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhcCcccc-CCCCCcccceEEEeecccccCCCCHHHHHHHH-
Confidence              11122233444456778888888888999999999774233311 1111  11122333211100011345676766 


Q ss_pred             HhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHHHHhhh
Q 038416          340 KEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       340 ~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      .++|+.... ..|...+.+||++  ..+++|++++++.++.+.++..+
T Consensus       832 ~d~G~~~~t-~~~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~~  878 (954)
T PRK05367        832 IDYGFHAPT-MSFPVAGTLMVEPTESESKAELDRFCDAMIAIRAEIDE  878 (954)
T ss_pred             HHCCCeEee-cCCccCCEEEEEeeecCCHHHHHHHHHHHHHHHHHHHH
Confidence            777998655 3344578899999  46789999999999888877654

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=99.64  E-value=2.6e-13  Score=121.13  Aligned_cols=315  Identities=17%  Similarity=0.144  Sum_probs=207.3

Q ss_pred             CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc----C-CC---CeEEEcCCCCcchHHHhhccCCC
Q 038416           49 TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA----R-PG---ANILIPRPGYPLYEIHAAGSNNN  120 (387)
Q Consensus        49 ~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~----~-~g---~~vl~~~p~~~~~~~~~~~~~~g  120 (387)
                      .++...+.+++.+++...++.+ ....=..|+|+|+++.++.....    + +|   ..++++...+-.+...++  ..+
T Consensus       115 fp~~~~~e~~~Vnm~~~L~~~~-~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~--yf~  191 (491)
T KOG1383|consen  115 FPVVRKLEAECVNMIANLFNAP-SDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAAR--YFE  191 (491)
T ss_pred             cchhHHHHHHHHHHHHHHhcCC-ccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHh--hEE
Confidence            3466788888888888877755 22333567888888666655532    1 23   367888888888999999  999


Q ss_pred             ceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHh-cCcEEeecccccccccC-CC
Q 038416          121 LEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARN-LGIIVIADEVYNHLAFG-ST  198 (387)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~-~~~~li~D~~~~~~~~~-~~  198 (387)
                      +++..+|+++ .++.+|+....+.+++||.+++.+-|+.|+|..   +++++|.++..+ +++++++|.+-++|... +.
T Consensus       192 v~l~~V~~~~-~~~~~D~~k~~~~i~eNti~lv~~~~~~p~G~~---e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~  267 (491)
T KOG1383|consen  192 VELREVPLDE-GDYRVDPGKVVRMIDENTIMLVGSLPNFPTGEI---EDVEKLADLLLEIWDIPIHVDACLGGFINPAGY  267 (491)
T ss_pred             EEEEeeeccc-cceEecHHHHHHHhccceEEEEEEcCCCCccch---hhHHHHHHHHHHHhCCceeecccCccccccccc
Confidence            9999999975 678999999999999999999999999999999   889999999888 99999999999998753 11


Q ss_pred             CCccccccCCCc-cEEEE-ecCcccccccccceEEEEeeCCCCccc----chhHHHHHHhhhhccC-CcchHHHHHHHHH
Q 038416          199 PYVPMGVFGSIV-PVITL-GSISKRWIVPGWRLGWLVTSDPNGILQ----NSGFVDSIKGCLNAAS-HPVTFIQAAVPRI  271 (387)
Q Consensus       199 ~~~~~~~~~~~~-~~~~i-~s~sK~~~~~g~r~G~i~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  271 (387)
                      .  ....++-.. .+..+ .+-+|. |+.-...||++-++...+..    +.++...+....+..+ .+.....++-+++
T Consensus       268 ~--~~~~fdFr~p~V~Sisa~~HKY-Gl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~  344 (491)
T KOG1383|consen  268 L--NEEEFDFRVPGVTSISADGHKY-GLAPAGSSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAAL  344 (491)
T ss_pred             c--CccccccCCCCceeEeecccee-eeeecCcEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHH
Confidence            1  111111111 12222 345566 66556689999887553221    1122221111111111 1222222222233


Q ss_pred             hhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCc
Q 038416          272 VDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRT  351 (387)
Q Consensus       272 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~  351 (387)
                      +. ..++...+..+.+.++...+++.+++++++..+..|.-....   +....+    +..++-+ ++++.|-.+.... 
T Consensus       345 ~~-lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp~vs~~~---~~s~~~----~i~elsd-~l~~~GW~lnalq-  414 (491)
T KOG1383|consen  345 MS-LGEEGYRENTQNIVETARKLREGIENIKGIKIVGKPLVSFIL---FGSNDV----NIFELSD-LLRKKGWILNALQ-  414 (491)
T ss_pred             HH-hhHHHHHHHHHHHHHHHHHHHHhhhccccceecCCCcEEEEE---ccCCcc----chhhhhH-HHHhcCcCccccC-
Confidence            33 455667788888999999999999999888866555433222   332211    4445544 4577798775533 


Q ss_pred             cCCCCeEEEEee---CChHhHHHHHHHHHHHHHHhhh
Q 038416          352 VGMKNWLRIAFA---AEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       352 ~~~~~~~Ri~~~---~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      +  +..+.|++.   ..++-.++++..|+++++++.+
T Consensus       415 ~--P~a~Hi~vt~~~~~~~~A~~~v~Di~~~~~el~~  449 (491)
T KOG1383|consen  415 F--PAAIHICVTRVHAREDVADRFVADIRKVVEELKS  449 (491)
T ss_pred             C--CCceEEEEEeeeccHHHHHHHHHHHHHHHHHHHh
Confidence            2  335666663   3455567788888888887764

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.64  E-value=6e-13  Score=132.08  Aligned_cols=313  Identities=12%  Similarity=0.033  Sum_probs=193.1

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc--------CCCCeEEEcCCCCcchHHHhhccCCCc
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA--------RPGANILIPRPGYPLYEIHAAGSNNNL  121 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--------~~g~~vl~~~p~~~~~~~~~~~~~~g~  121 (387)
                      +|..++...+..|+.+..|.+  . .-+..++++++..+.+.+..        ...+.|+++...|+.....+.  ..|+
T Consensus       526 qG~lq~i~elq~~l~eltGmd--~-~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~--~~G~  600 (939)
T TIGR00461       526 EGYQELIAQLEKWLCSITGFD--A-ISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAA--MAGM  600 (939)
T ss_pred             HHHHHHHHHHHHHHHHHHCCC--C-cccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHH--HCCC
Confidence            356677777777777766644  2 22334555655554443332        123578899999987777788  8999


Q ss_pred             eeeeeccCCCCCccCChhhHHHhhcc---CceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCC
Q 038416          122 EARHYDLLPEKRWEVDLDGVEALADE---NTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGST  198 (387)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~  198 (387)
                      +++.++.+  .+..+|+++|++.+++   ++++|++++|+| +|.+-+  ++++|+++|+++|.++++|.++.....   
T Consensus       601 ~Vv~V~~d--~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~--~I~eI~~iah~~G~~v~VDgAq~~al~---  672 (939)
T TIGR00461       601 QVVPVNCD--QDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEP--TIQHACDIVHSFGGQVYLDGANMNAQV---  672 (939)
T ss_pred             EEEEeccC--CCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-Cceecc--cHHHHHHHHHHcCCEEEEEecChhhCC---
Confidence            99999875  3447999999999974   789999999999 788732  299999999999999999999964111   


Q ss_pred             CCccccccCCCccEEEEecCccccc----ccccceEEEEeeCCCCcccch--hHHHH---------HHhhhhccCCcchH
Q 038416          199 PYVPMGVFGSIVPVITLGSISKRWI----VPGWRLGWLVTSDPNGILQNS--GFVDS---------IKGCLNAASHPVTF  263 (387)
Q Consensus       199 ~~~~~~~~~~~~~~~~i~s~sK~~~----~~g~r~G~i~~~~~~~~~~~~--~~~~~---------~~~~~~~~~~~~~~  263 (387)
                      .......+..|   ++++|.+|+|+    .+|..+|.+.+++.- ...-|  .+.+.         ++...+ ....+..
T Consensus       673 ~l~~Pg~~GaD---i~~~s~HKtf~~P~G~GGPg~G~i~vr~~L-~~~lPg~~v~~t~d~~greq~Iga~s~-~~~g~a~  747 (939)
T TIGR00461       673 GLTSPGDLGAD---VCHLNLHKTFCIPHGGGGPGMGPIGVKSHL-IPFLPKHDVVSMITGIGGSKSIGSVSA-APYGSAS  747 (939)
T ss_pred             CCCCccccCCC---EEEecCCccCCCCCCCCCCCeEEEEEhhhc-hhhcCCCcccccccCCCCccccccccc-cccCcHH
Confidence            11222334444   88899999765    355668999887411 00000  00000         000000 0111222


Q ss_pred             HHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC-ceE---EEEEecCcccccCCCcHHHHHHHHH
Q 038416          264 IQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ-GAM---FVMVKLNVSMLEDIGDDLEFCLKLA  339 (387)
Q Consensus       264 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~g~---~~~~~~~~~~~~~~~~~~~~~~~ll  339 (387)
                      ....+...|.....+.+.+..+....+++++.++|++.  .+.. .+. .+.   =+.++++........+..++..+| 
T Consensus       748 ~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~~--~~~l-~~~~~~~~~hEfv~~~~~~~~~~g~~~~dIakrL-  823 (939)
T TIGR00461       748 ILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKDH--YPIL-FVGTLKHVAHECILDLRPLKAKTGIEAIDVAKRL-  823 (939)
T ss_pred             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcc--Cccc-ccCCCCceeEEEEEeccchhhhcCCCHHHHHHHH-
Confidence            22333334444556788888888889999999999873  3423 322 222   133455421100012456777776 


Q ss_pred             HhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHHHHhhh
Q 038416          340 KEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       340 ~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      .++|+.... ..|...+.+-|.+  ..++++||+.++.+.++.++..+
T Consensus       824 ~d~G~hapt-~~~pv~g~lmiepTE~eskeelD~f~~al~~I~~e~~~  870 (939)
T TIGR00461       824 QDYGFHAPT-LSFPVPGTLMVEPTESESLEELDRFCDAMIAIKEEINA  870 (939)
T ss_pred             HhCCeeccc-cCCccCCeEEEEeeccCCHHHHHHHHHHHHHHHHHHHH
Confidence            566987543 3343445555555  56889999999888777766543

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.63  E-value=6.2e-13  Score=131.18  Aligned_cols=305  Identities=11%  Similarity=0.049  Sum_probs=186.9

Q ss_pred             CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcC-ChHHHHHHHHHhhcC-------C-CCeEEEcCCCCcchHHHhhccCC
Q 038416           49 TLGVPSARRGIADYLNRDLPYKLSPEDVYLTL-GCSQAIEISLSVLAR-------P-GANILIPRPGYPLYEIHAAGSNN  119 (387)
Q Consensus        49 ~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~-g~~~a~~~~~~~l~~-------~-g~~vl~~~p~~~~~~~~~~~~~~  119 (387)
                      .+|+-++-.++.+++.+..|    -+.+-+-. +++++..+++.++..       + .++|+++.-.|+.....+.  ..
T Consensus       538 sQG~lq~i~elq~~l~eLtG----md~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpasa~--~~  611 (954)
T PRK12566        538 AEGYRAMIDELEAWLCAITG----FDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPASAQ--MA  611 (954)
T ss_pred             hcCHHHHHHHHHHHHHHHHC----CCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHHHH--HC
Confidence            45666666666666665444    23344444 456566555555431       2 3678888888866556677  78


Q ss_pred             CceeeeeccCCCCCccCChhhHHHhhc---cCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccC
Q 038416          120 NLEARHYDLLPEKRWEVDLDGVEALAD---ENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFG  196 (387)
Q Consensus       120 g~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~  196 (387)
                      |++++.++.+.  +..+|+++|++.++   +++.+|.+++|++-++..   +++++|+++|+++|+++++|.++....  
T Consensus       612 GieVv~Vp~D~--~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e---~~V~eI~~iah~~Galv~vDgA~~~a~--  684 (954)
T PRK12566        612 GMRVVIVECDP--DGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYE---EGIREICEVVHQHGGQVYMDGANLNAQ--  684 (954)
T ss_pred             CCEEEEeccCC--CCCcCHHHHHHHhhccCCCEEEEEEEecCcCceec---chHHHHHHHHHHcCCEEEEEeeChhhc--
Confidence            99999999863  33799999999987   567778888888755442   669999999999999999999997311  


Q ss_pred             CCCCccccccCCCccEEEEecCccccc----ccccceEEEEeeCCCCcccchhHHHHHHhh------------hhccC--
Q 038416          197 STPYVPMGVFGSIVPVITLGSISKRWI----VPGWRLGWLVTSDPNGILQNSGFVDSIKGC------------LNAAS--  258 (387)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~i~s~sK~~~----~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~------------~~~~~--  258 (387)
                       ........++.|   +++++.+|+|+    .+|.-+|.+.+.+        .+...+...            ...+.  
T Consensus       685 -~~l~~Pg~~GAD---i~~~s~HKtf~~P~G~GGP~vG~iav~~--------~L~pfLp~~P~~d~~G~~~r~ga~S~~~  752 (954)
T PRK12566        685 -VGLARPADIGAD---VSHMNLHKTFCIPHGGGGPGMGPIGVRA--------HLAPFVANHPVVPVEGPDPNNGAVSAAP  752 (954)
T ss_pred             -cCCCChhhcCCC---EEEecCCcccCcCccCCCCccchhhhhh--------hhhhhccCCCCcCCCCCCCCCCceeecc
Confidence             122222345444   88999999885    2344456655443        111111110            11101  


Q ss_pred             CcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceE-E--EEEecCc-ccccCCCcHHHH
Q 038416          259 HPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAM-F--VMVKLNV-SMLEDIGDDLEF  334 (387)
Q Consensus       259 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~-~--~~~~~~~-~~~~~~~~~~~~  334 (387)
                      ..+.....++..++.....+ +.+.......+++++.+.|.+..++. . .+..+. +  +.+++.. +...+ .+..++
T Consensus       753 ~gsa~~l~~A~~Yi~~lG~e-Lk~aa~~ailnAnYla~rL~~~~~v~-~-~~~~~~~~hEfii~~~~l~~~~g-~~~~dv  828 (954)
T PRK12566        753 WGSASILPISWMYIAMMGPQ-LADASEVAILSANYLANQLGGAFPVL-Y-RGRNERVAHECILDLRPLKAQTG-ISEEDV  828 (954)
T ss_pred             cchHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHhHhhCCCC-c-CCCCCCeeeEEEEEccccccccC-CCHHHH
Confidence            11111122333334433445 66666666778889999997743444 2 222122 1  2223321 11111 245667


Q ss_pred             HHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHHHHhh
Q 038416          335 CLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       335 ~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      ...|+ ++||.... ..|...+++|+++  ..++++++++++.++.+.++..
T Consensus       829 akRL~-d~Gihapt-~~fPv~~~LmIepTE~eskeEIDrf~eAL~~I~~e~~  878 (954)
T PRK12566        829 AKRLM-DYGFHAPT-MSFPVPGTLMVEPTESESKAELDRFVEAMLSIRAEIG  878 (954)
T ss_pred             HHHHH-HCCcEEeE-EeeccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHH
Confidence            77776 78987654 3444578999999  4689999999999988887754

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.61  E-value=3.7e-13  Score=130.24  Aligned_cols=166  Identities=13%  Similarity=0.146  Sum_probs=116.9

Q ss_pred             cHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHH-hhccCCCceeeeeccCC
Q 038416           52 VPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIH-AAGSNNNLEARHYDLLP  130 (387)
Q Consensus        52 ~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~-~~~~~~g~~~~~~~~~~  130 (387)
                      ..+.++.+|+.++       ....-++++|+|.++.+++.+++++||.|+++.+||-+.... +.  ..|+.++++....
T Consensus       176 i~eAq~~AA~~fg-------Ad~tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hgaLi--LsGa~PVYl~P~~  246 (720)
T PRK13578        176 AKDAQKHAAKVFN-------ADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALI--QAGATPVYLETAR  246 (720)
T ss_pred             HHHHHHHHHHHhC-------CCceEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHH--HcCCeEEEeeccc
Confidence            3455566666662       234567889999999999999999999999999999998874 77  8999998886433


Q ss_pred             CCCcc----CChhh-----HHHhhccC----------ceEEEEeCCCCCccccCCHHHHHHHHHH-HHhcCcEEeecccc
Q 038416          131 EKRWE----VDLDG-----VEALADEN----------TVAIVIINPGNPCGNVFSYQHLQKIART-ARNLGIIVIADEVY  190 (387)
Q Consensus       131 ~~~~~----~~~~~-----l~~~~~~~----------~~~v~l~~p~nptG~~~~~~~~~~l~~~-~~~~~~~li~D~~~  190 (387)
                       +.++    +++++     +++++..+          .+++++++|+- -|++++   +++|+++ ++.++ +|++||+|
T Consensus       247 -n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~yd---i~~I~~~~~h~~~-~llvDEAh  320 (720)
T PRK13578        247 -NPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY-DGTIYN---ARQVVDKIGHLCD-YILFDSAW  320 (720)
T ss_pred             -cccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC-cceeec---HHHHHHHhhccCC-cEEEeCcc
Confidence             2333    35444     78777554          47889999874 788877   7888887 56777 99999999


Q ss_pred             cccc-cCCC--CCccc-cccCC-CccEEEEecCcccccccccceEEEEe
Q 038416          191 NHLA-FGST--PYVPM-GVFGS-IVPVITLGSISKRWIVPGWRLGWLVT  234 (387)
Q Consensus       191 ~~~~-~~~~--~~~~~-~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~  234 (387)
                      .... |...  ...++ ..... +..++++.|.||.  ++++.-+.++.
T Consensus       321 gah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKt--L~alTQaS~LH  367 (720)
T PRK13578        321 VGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQ--QAGFSQTSQIH  367 (720)
T ss_pred             hhhhccCcccccCChhhhhcCCCCCCeEEEEChhhc--chhhhhHhhhh
Confidence            8643 3321  01111 12222 3457999999998  56665555443

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=9.7e-14  Score=123.02  Aligned_cols=319  Identities=12%  Similarity=0.103  Sum_probs=202.4

Q ss_pred             CCCCcHHHHHHHHHHhcCC--CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeE
Q 038416           23 LLSDSTVAEDAVVDALRTA--HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANI  100 (387)
Q Consensus        23 ~~~~~~~v~~a~~~~~~~~--~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~v  100 (387)
                      ..+..+.+.+++.+.--..  ....-+......++++.+|+|++       .++.+++..| -..+.+.+.+|+.||.-|
T Consensus       153 ~g~ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f~g-------~e~a~vF~mG-f~TNs~~~p~l~~~gsLI  224 (519)
T KOG1357|consen  153 VGPCAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARFLG-------VEDAIVFSMG-FATNSMNIPSLLGKGSLI  224 (519)
T ss_pred             CCcCChHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHhcC-------CcceEEEecc-ccccccCcceeecCCcce
Confidence            4567777777777654321  11112222334567777777773       4567777776 556777788899999999


Q ss_pred             EEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc-------cC-----ceEEEEeCC-CCCccccCCH
Q 038416          101 LIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD-------EN-----TVAIVIINP-GNPCGNVFSY  167 (387)
Q Consensus       101 l~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~-----~~~v~l~~p-~nptG~~~~~  167 (387)
                      +..+-.|.++...++  ..|+.+.....+       |...||+.++       +.     .+.+++... ...-|.+   
T Consensus       225 iSDelNHaSi~~GaR--LSgAtiRVfkHN-------dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~i---  292 (519)
T KOG1357|consen  225 ISDELNHASLITGAR--LSGATTRVFRHN-------DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTI---  292 (519)
T ss_pred             eeccccchheecccc--ccCceEEEEecC-------CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCee---
Confidence            999999999999999  899888877653       3344444432       21     234444433 3455666   


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccC--CCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchh
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFG--STPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSG  245 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~  245 (387)
                      ..+.++++++++|..+++.||+|+....+  |.....+...++.+-.+.+++|+|+|+..|   |++.+++        +
T Consensus       293 v~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga~G---Gyiagsk--------~  361 (519)
T KOG1357|consen  293 VDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGAAG---GYIAGSK--------E  361 (519)
T ss_pred             cccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhccccc---ceecCcH--------H
Confidence            44899999999999999999999964432  222333334445556788999999998888   9999877        7


Q ss_pred             HHHHHHhhhh---c-cCCcchHHHHHHHHHhhh----ccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCce--EE
Q 038416          246 FVDSIKGCLN---A-ASHPVTFIQAAVPRIVDE----TNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGA--MF  315 (387)
Q Consensus       246 ~~~~~~~~~~---~-~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g--~~  315 (387)
                      +++.++....   . +.-+++..|..... ++.    ......++..+++.+++.+++..++.. ++.+. .....  ..
T Consensus       362 lid~lrt~s~~~~yat~~sppvaqq~~ss-l~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~-gfivy-G~~dSpVvp  438 (519)
T KOG1357|consen  362 LIDYLRTPSPSALYATSLSPPVAQQILTS-VKHIMGEDGTNRGRQKIERLAENSRYFRWELQKM-GFIVY-GNNDSPVVP  438 (519)
T ss_pred             HHhhhccCCCceeecccCChHHHHHHHHH-HHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcC-cEEEe-cCCCCCcce
Confidence            8888776532   1 22334444444332 222    123556788899999999999999887 54422 22222  11


Q ss_pred             EEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccC-C--CCeEEEEee--CChHhHHHHHHHHHHHHHHh
Q 038416          316 VMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG-M--KNWLRIAFA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~-~--~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                      +.+-.+.       ....+-++++++ +|.+...++.. .  ....|++.+  .+.|+++.+++.+.+.-+..
T Consensus       439 lll~~~~-------k~~~f~r~~l~~-nigvVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g~~~  503 (519)
T KOG1357|consen  439 LLLYGPA-------KIVAFSREMLER-NIGVVVVGFPATPLLESRARFCLSASHTKEDLDRALEVIDRVGDED  503 (519)
T ss_pred             eeecCcc-------cccHHHHHHHhc-CceEEEEeCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhhchhh
Confidence            2222222       223455566554 65554433221 1  356788884  57899999999987765443

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=99.57  E-value=2.3e-12  Score=124.67  Aligned_cols=164  Identities=16%  Similarity=0.092  Sum_probs=116.0

Q ss_pred             cHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCC
Q 038416           52 VPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPE  131 (387)
Q Consensus        52 ~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~  131 (387)
                      ..+.++.+|+.++       ....-++++|+|.++.+++.+++.+||.|++..+||-+....+.  ..|+.+++++... 
T Consensus       197 i~eAe~~AA~~fg-------Ad~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~haLi--lsga~PVYl~P~r-  266 (714)
T PRK15400        197 HKEAEEYIARVFN-------ADRSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTHLMM--MSDVTPIYFRPTR-  266 (714)
T ss_pred             HHHHHHHHHHHhC-------CCcEEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHH--HcCCeEEEecccc-
Confidence            3455666666662       22356788999999999999999999999999999999988888  9999999886432 


Q ss_pred             CCcc----CC-----hhhHHHhhccC--ce---EEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccc-cC
Q 038416          132 KRWE----VD-----LDGVEALADEN--TV---AIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLA-FG  196 (387)
Q Consensus       132 ~~~~----~~-----~~~l~~~~~~~--~~---~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~-~~  196 (387)
                      +.++    ++     .+.+++++..+  .+   .+++++|+ --|++++   +++|+++|..++  +++||+|.... |.
T Consensus       267 n~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pT-YdG~~yd---~~~I~~~~~~~~--ilvDEAwgah~~F~  340 (714)
T PRK15400        267 NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNST-YDGLLYN---TDFIKKTLDVKS--IHFDSAWVPYTNFS  340 (714)
T ss_pred             cccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCC-CccEecC---HHHHHHHhCCCC--EEEEccchhhhccC
Confidence            2332    34     78888888543  23   68888985 5899977   677777887776  78999998643 33


Q ss_pred             CCC--Ccccccc-CCCccEEEEecCcccccccccceEEEE
Q 038416          197 STP--YVPMGVF-GSIVPVITLGSISKRWIVPGWRLGWLV  233 (387)
Q Consensus       197 ~~~--~~~~~~~-~~~~~~~~i~s~sK~~~~~g~r~G~i~  233 (387)
                      ..-  ..++... +.++.++++.|.||.  ++++.-+.++
T Consensus       341 p~~~~~sam~~ga~~~~~i~vtQStHKt--L~alTQaS~L  378 (714)
T PRK15400        341 PIYEGKCGMSGGRVEGKVIYETQSTHKL--LAAFSQASMI  378 (714)
T ss_pred             cccCCcChhhcCCCCCCceEEEEchhhc--ccchhHHhHH
Confidence            211  1222211 112456999999998  5666555544

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.56  E-value=5.7e-12  Score=114.36  Aligned_cols=333  Identities=16%  Similarity=0.133  Sum_probs=199.6

Q ss_pred             CCCCCCC-CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC-C
Q 038416           19 LGVSLLS-DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR-P   96 (387)
Q Consensus        19 ~~~~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-~   96 (387)
                      .+++... +++.+.++|..   .+  -.|..+.....|++.+++++        ..+.++.|..+..+..+++..+++ +
T Consensus        47 rSDTgT~apS~~m~aAM~~---GD--D~Y~gdpSv~~Lee~vael~--------G~E~alpthqGRgaE~Il~~~~~~~~  113 (467)
T TIGR02617        47 LTDSGTGAVTQSMQAAMMR---GD--EAYSGSRSYYALAESVKNIF--------GYQYTIPTHQGRGAEQIYIPVLIKKR  113 (467)
T ss_pred             ccCCCCCCCCHHHHHHHHc---CC--cccccCchHHHHHHHHHHHh--------CCceEEECCCCchHHHHHHHhhcccc
Confidence            3454553 78888888886   22  24777778899999999999        446788998889999999999987 6


Q ss_pred             CCeEEEcCC-------CCcc-hHHHhhccCCCceeeeeccC--------CCCCccCChhhHHHhhcc----CceEEEEeC
Q 038416           97 GANILIPRP-------GYPL-YEIHAAGSNNNLEARHYDLL--------PEKRWEVDLDGVEALADE----NTVAIVIIN  156 (387)
Q Consensus        97 g~~vl~~~p-------~~~~-~~~~~~~~~~g~~~~~~~~~--------~~~~~~~~~~~l~~~~~~----~~~~v~l~~  156 (387)
                      |+.+++..+       .|+. ....+.  ..|..+..++.+        ...+..+|++.+++++++    +...+...-
T Consensus       114 g~e~g~~~~~~~v~hn~~fett~g~a~--l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tl  191 (467)
T TIGR02617       114 EQEKGLDRSKMVAFSNYFFDTTQGHSQ--INGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATI  191 (467)
T ss_pred             cccccccccccccceEEEEecchHHHH--HcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeE
Confidence            776664332       2222 234566  678777665321        122347899999999974    222221111


Q ss_pred             C-CCCccccCCHHHHHHHHHHHHhcCcEEeecccccc--c--------ccCCCCCcccc-ccCCCccEEEEecCcccccc
Q 038416          157 P-GNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNH--L--------AFGSTPYVPMG-VFGSIVPVITLGSISKRWIV  224 (387)
Q Consensus       157 p-~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~--~--------~~~~~~~~~~~-~~~~~~~~~~i~s~sK~~~~  224 (387)
                      . |.-.|+.+|.+.++++.++|++||+.++.|.+--.  .        .+.+.....+. .+.... ..+..|+||.++.
T Consensus       192 t~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~a-Dsvt~slsKglgA  270 (467)
T TIGR02617       192 TCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYA-DMLAMSAKKDAMV  270 (467)
T ss_pred             EEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccC-CEEEEEcCCCCCC
Confidence            1 33579999999999999999999999999986532  1        12222222111 101111 1455689999766


Q ss_pred             cccce-EEEEeeCCCCcccchhHHHHHHhhh----h--ccCCcchHHHHHHHHHhhh-ccHHHHHHHHHHHHHHHHHHHH
Q 038416          225 PGWRL-GWLVTSDPNGILQNSGFVDSIKGCL----N--AASHPVTFIQAAVPRIVDE-TNEAFFAKIIGLLKETADICYE  296 (387)
Q Consensus       225 ~g~r~-G~i~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~  296 (387)
                      |   + |++++++ ..++   ++.++.+...    .  +.++.+.--..+++.-|.+ ..+.++..+...++...    +
T Consensus       271 p---vGg~Lag~d-~~~~---~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~~yl~~ri~qv~yl~----~  339 (467)
T TIGR02617       271 P---MGGLLCFKD-DSFF---DVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRINQVQYLV----N  339 (467)
T ss_pred             c---ccceEEecc-hhHH---HHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccHHHHHHHHHHHHHHH----H
Confidence            5   4 4555544 2000   2333333321    1  1123344444454444443 23566666666665544    5


Q ss_pred             HhhcCCCCCCCCCCCceEEEEEecCc--cccc--CCCcHHHHHHHHHHhcCeEEE-cCCcc-CC-----------CCeEE
Q 038416          297 RIKEIPCITCPVKPQGAMFVMVKLNV--SMLE--DIGDDLEFCLKLAKEESVIIL-PGRTV-GM-----------KNWLR  359 (387)
Q Consensus       297 ~l~~~~~~~~~~~~~~g~~~~~~~~~--~~~~--~~~~~~~~~~~ll~~~gi~v~-~g~~~-~~-----------~~~~R  359 (387)
                      .|.+. |+.++ . .+|.-++++-..  +.+|  .+ ....++.+|-.+.||-.. -|+.. +.           -..+|
T Consensus       340 ~L~~~-Gvpi~-~-~Gghav~iDa~~~lphip~~~f-pa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~~~~~el~R  415 (467)
T TIGR02617       340 GLEEI-GVVCQ-Q-AGGHAAFVDAGKLLPHIPADQF-PAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQLPCPAELLR  415 (467)
T ss_pred             HHHhC-CCcEE-e-cCccEEEEehhhhCCCCChhhC-cHHHHHHHHHHHcCcceEeecceecccCCCCCccCCCccceee
Confidence            55555 67644 4 666666664322  1111  12 456778888888888744 23321 11           14699


Q ss_pred             EEee---CChHhHHHHHHHHHHHHHH
Q 038416          360 IAFA---AEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       360 i~~~---~~~e~~~~~~~~l~~~~~~  382 (387)
                      +.+.   -+.+.++...+++..+.++
T Consensus       416 laipRrvyt~~h~d~v~~~~~~~~~~  441 (467)
T TIGR02617       416 LTIPRATYTQTHMDFIIEAFKHVKEN  441 (467)
T ss_pred             eccccccccHhHHHHHHHHHHHHHhh
Confidence            9993   3788888888888776654

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=99.55  E-value=1.5e-11  Score=119.12  Aligned_cols=163  Identities=17%  Similarity=0.102  Sum_probs=113.6

Q ss_pred             cHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCC
Q 038416           52 VPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPE  131 (387)
Q Consensus        52 ~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~  131 (387)
                      ..+.++.+|+.++       ....-++++|+|.++.+++.+++.+||.|++..+||-+....+.  ..|+.+++++... 
T Consensus       197 i~eAe~~aA~~fg-------Ad~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~aLi--lsga~PVYl~P~~-  266 (713)
T PRK15399        197 HLEAEEYIARTFG-------AEQSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHLLM--MSDVVPIWLKPTR-  266 (713)
T ss_pred             HHHHHHHHHHHhC-------CCcEEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHH--HcCCeeEEecccc-
Confidence            3455566666662       22356788999999999999999999999999999999888888  9999999886432 


Q ss_pred             CCcc----CCh-----hhHHHhhccC-----ceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEE-eecccccccc-c
Q 038416          132 KRWE----VDL-----DGVEALADEN-----TVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIV-IADEVYNHLA-F  195 (387)
Q Consensus       132 ~~~~----~~~-----~~l~~~~~~~-----~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~l-i~D~~~~~~~-~  195 (387)
                      +.++    +++     +.+++++..+     ++.+++++|+ --|++++   +++|++.|   |+.+ ++||+|.... |
T Consensus       267 n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pT-YdGi~yd---~~~I~~~~---g~~~ilvDEAhgah~~F  339 (713)
T PRK15399        267 NALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNST-YDGLLYN---TDWIKQTL---DVPSIHFDSAWVPYTHF  339 (713)
T ss_pred             cccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCC-CCceeeC---HHHHHHHh---CCCEEEEeccchhhhhc
Confidence            2232    344     8888887543     2578889985 5899987   56666666   5655 6999999643 3


Q ss_pred             CCCCCcccccc----CCCccEEEEecCcccccccccceEEEEe
Q 038416          196 GSTPYVPMGVF----GSIVPVITLGSISKRWIVPGWRLGWLVT  234 (387)
Q Consensus       196 ~~~~~~~~~~~----~~~~~~~~i~s~sK~~~~~g~r~G~i~~  234 (387)
                      .. .+.+...+    ..+.-++++.|.||.  ++++.-+.++.
T Consensus       340 ~p-~~~~~sam~~~~~aD~~i~~tQStHKt--L~alTQaS~iH  379 (713)
T PRK15399        340 HP-IYQGKSGMSGERVPGKVIFETQSTHKM--LAAFSQASLIH  379 (713)
T ss_pred             Cc-ccCCcChhhCCCCCCeeeeeeeehhcc--ccccchheeee
Confidence            22 12212222    223345678999998  56665555543

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=7.9e-13  Score=115.28  Aligned_cols=330  Identities=15%  Similarity=0.125  Sum_probs=202.9

Q ss_pred             CCCCCCCcHHHHHHHHHHhcCC------CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh
Q 038416           20 GVSLLSDSTVAEDAVVDALRTA------HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL   93 (387)
Q Consensus        20 ~~~~~~~~~~v~~a~~~~~~~~------~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l   93 (387)
                      .+.++...+.+.+.....++.-      -..-|+.......+++.||++++        .++-++-+-+-+++..++.++
T Consensus       103 NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G--------~E~aivYs~gF~ti~S~ipaf  174 (467)
T KOG1358|consen  103 NFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMG--------TEDAIVYSYGFSTIESAIPAF  174 (467)
T ss_pred             hhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhC--------Ccceeeeccccchhhhcchhh
Confidence            3445778888888888887751      12347776677899999999993        344455555677899999999


Q ss_pred             cCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc------------C-ceEEEEeCCCCC
Q 038416           94 ARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE------------N-TVAIVIINPGNP  160 (387)
Q Consensus        94 ~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~-~~~v~l~~p~np  160 (387)
                      +++||.|.+.+-..+.+...++  ...-.+.+...+       |.+.++..+.+            . .+.+++..-.-+
T Consensus       175 sKrGDIi~~de~~nfaIq~Glq--lSRS~i~~Fkhn-------dm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N  245 (467)
T KOG1358|consen  175 SKRGDIIFVDEAVNFAIQKGLQ--LSRSTISYFKHN-------DMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYAN  245 (467)
T ss_pred             hccCcEEEEehhhhHHHHHHHh--hhhheeEEecCC-------CHHHHHHhccCcchhhhhccccccceEEEEEEeeccC
Confidence            9999999998888877776666  555555555432       45555554422            1 223444444557


Q ss_pred             ccccCCHHHHHHHHHHHHhcCcEEeecccccccccC--CCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCC
Q 038416          161 CGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFG--STPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPN  238 (387)
Q Consensus       161 tG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~  238 (387)
                      +|.+.|   +.+|+++.++|...+|.|+.++....+  |++.......+..+-.++++|+.-++...|   |++.++.  
T Consensus       246 ~g~i~p---l~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas~G---gFc~G~~--  317 (467)
T KOG1358|consen  246 TGDICP---LPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALASGG---GFCAGKS--  317 (467)
T ss_pred             CCcccc---cHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeecccccccccC---ceeecce--
Confidence            999977   788888888999999999999954433  333333333333344588888888865554   6766643  


Q ss_pred             CcccchhHHHHHHhh-hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEE
Q 038416          239 GILQNSGFVDSIKGC-LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVM  317 (387)
Q Consensus       239 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~  317 (387)
                      ..    -..+++... +.++...++....++..++..  +++-.++.+.++.....+...|+...++.+...+. .....
T Consensus       318 ~i----~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i--~~~~p~~~~~L~~k~~~~H~~l~~~s~~~v~~~~~-SPi~h  390 (467)
T KOG1358|consen  318 FI----ADHQRLSGSGYCFSASLPPYLAGAAIKAILI--EEWNPEIVQPLRAKVAKFHAALSSNSGFIVSGSPE-SPIIH  390 (467)
T ss_pred             ee----EeeeeccccceeeeccCchhhhhhHHHHHHH--HhhCcchhhhhhccccccchhhhcCCceEEecCcC-Cceee
Confidence            00    011112111 113333344444444444432  33345566677776667777777765666443333 44556


Q ss_pred             EecCcccccCCCcH----HHHHHHHHHhcCeEEEcCCc------cCCCCeEEEEe--eCChHhHHHHHHHHHHHHHHh
Q 038416          318 VKLNVSMLEDIGDD----LEFCLKLAKEESVIILPGRT------VGMKNWLRIAF--AAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       318 ~~~~~~~~~~~~~~----~~~~~~ll~~~gi~v~~g~~------~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      +.+....... .+.    .++++..+.+ ++.+.....      +..+..+||++  +.++|+++++.+.|++....+
T Consensus       391 l~l~~~~~s~-e~e~~lL~eivd~~i~~-~~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik~~~~~~  466 (467)
T KOG1358|consen  391 LQLERSYGSR-EKEEKLLEEIVDKCIAE-GVLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAELIKEVASAV  466 (467)
T ss_pred             eeecccccch-HHHHHHHHHHHHHHHhh-cceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHHHHHHhh
Confidence            6665432211 111    2344444444 766654322      22356899999  458999999999998876543

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.52  E-value=1.3e-11  Score=124.13  Aligned_cols=308  Identities=15%  Similarity=0.107  Sum_probs=187.9

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCCCC-----C----cHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSPTL-----G----VPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA   94 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~~~-----~----~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~   94 (387)
                      .-.|+.+.+++.+..+.  +..|++.+     |    ..+++..+++++      +.+.+++.++.++|.+.++++.++.
T Consensus       115 ~~~P~~v~~~i~~~~~~--~TaytPYqaEisQG~lqal~~~Qt~ia~Lt------G~~~anaSL~d~aTAaaea~~~a~~  186 (993)
T PLN02414        115 THVPPVILRNILENPGW--YTQYTPYQAEIAQGRLESLLNYQTMITDLT------GLPMSNASLLDEGTAAAEAMAMCNN  186 (993)
T ss_pred             ccCCHHHHHHHHhChHH--HhhcCCCchHHHHHHHHHHHHHHHHHHHHh------CCChhhEeecCChHHHHHHHHHHHh
Confidence            34677777777765542  22344422     2    456677788887      6788999999999999999887763


Q ss_pred             -CCC--CeEEEcCCCCcchHHHhh--ccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHH
Q 038416           95 -RPG--ANILIPRPGYPLYEIHAA--GSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQH  169 (387)
Q Consensus        95 -~~g--~~vl~~~p~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~  169 (387)
                       ++|  ++|++++..|+.+...++  -...|+++..++....     +      ........+++..|+ .+|.+.+   
T Consensus       187 ~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~-----~------~~~~~v~~vlvq~P~-~~G~v~d---  251 (993)
T PLN02414        187 ILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDF-----D------YSSGDVCGVLVQYPA-TDGEVLD---  251 (993)
T ss_pred             cccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhh-----c------cccCceEEEEEecCC-CCeEEcC---
Confidence             433  789999999998755443  0046888888875321     1      111133344444554 4999965   


Q ss_pred             HHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccc---cccccceEEEEeeCCCCcccch-h
Q 038416          170 LQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRW---IVPGWRLGWLVTSDPNGILQNS-G  245 (387)
Q Consensus       170 ~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~---~~~g~r~G~i~~~~~~~~~~~~-~  245 (387)
                      +++|+++|+++|+++++ .++.. ...  ...+...+..|   +++++.+|+.   |..|...|++.+++.... .-| .
T Consensus       252 v~~I~~~ah~~GaL~iV-aad~l-al~--~l~~pge~GAD---i~vgsgqKwg~P~G~GGP~aGflavr~~~~r-~~Pgr  323 (993)
T PLN02414        252 YAEFVKNAHANGVKVVM-ATDLL-ALT--MLKPPGEWGAD---IVVGSAQRFGVPMGYGGPHAAFLATSQEYKR-LMPGR  323 (993)
T ss_pred             HHHHHHHHHHcCCEEEE-EECHH-Hhc--CCCCHhhccCc---EEEECCCccccCCCCCCCCeeEEEECHHHHh-hCCCc
Confidence            89999999999999999 44432 111  12234445554   8899999985   235566899998762110 011 0


Q ss_pred             HHHH---------H------Hhh--hhccCCcchHHHHHHHHHhh-----hccHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 038416          246 FVDS---------I------KGC--LNAASHPVTFIQAAVPRIVD-----ETNEAFFAKIIGLLKETADICYERIKEIPC  303 (387)
Q Consensus       246 ~~~~---------~------~~~--~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  303 (387)
                      ++.+         +      +..  +.-..+.+.-+..++.+.+.     ......+++..+++.++..++++.|+.. |
T Consensus       324 iVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~-G  402 (993)
T PLN02414        324 IIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKL-G  402 (993)
T ss_pred             ccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhc-C
Confidence            1100         0      000  00011233322222222222     1233567888888999999999999876 6


Q ss_pred             CCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHH
Q 038416          304 ITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIK  377 (387)
Q Consensus       304 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~  377 (387)
                      ++....+..+ .+.++++        +..++...| .++||.+....    .+.+|+|++  ++++||+.+++.|.
T Consensus       403 ~~~~~~~~f~-~vt~~~~--------~~~~v~~~L-~~~gI~l~~~~----~~~lrvs~~e~~T~edId~L~~~l~  464 (993)
T PLN02414        403 FQVQSLPFFD-TVKVKCS--------DADAIADAA-AKVGINLRVVD----ANTVTVSFDETTTLEDVDKLFKVFA  464 (993)
T ss_pred             CccCCCCCcC-eEEEecC--------CHHHHHHHH-HHCCCeeEEec----CCeEEEEeeccCCHHHHHHHHHHHc
Confidence            7754333222 2333443        345566665 56699776432    467999994  68999999999986

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.51  E-value=1.8e-11  Score=123.75  Aligned_cols=270  Identities=14%  Similarity=0.114  Sum_probs=174.3

Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc-CC--CCeEEEcCCCCcchHHH----hhccCCCceeee
Q 038416           53 PSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA-RP--GANILIPRPGYPLYEIH----AAGSNNNLEARH  125 (387)
Q Consensus        53 ~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~--g~~vl~~~p~~~~~~~~----~~~~~~g~~~~~  125 (387)
                      .++++.+++++      +.+..++.+..++|.+.+.++.++. ++  +++|++++..|+.+...    ++  ..|++++.
T Consensus       124 ~~~Qt~la~Lt------G~~~anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~--~~G~ev~~  195 (954)
T PRK05367        124 LNFQTMVADLT------GLEIANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAE--PLGIEVVV  195 (954)
T ss_pred             HHHHHHHHHHH------CCChhhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHH--hCCCEEEE
Confidence            44556677776      5788899999999999998888863 34  48999999999876644    45  68999988


Q ss_pred             eccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccc
Q 038416          126 YDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV  205 (387)
Q Consensus       126 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~  205 (387)
                      ++...      +.+      +.++.++++.+| |.+|.+.+   +++|+++|+++|+++++|....-+..    ..+...
T Consensus       196 ~~~~~------d~~------~~~~~~vlvq~p-~~~G~i~d---~~~i~~~ah~~Gal~~vda~~~Al~~----l~~pge  255 (954)
T PRK05367        196 GDAAK------ALD------HDDVFGVLLQYP-GTSGEVRD---YTALIAAAHARGALVAVAADLLALTL----LTPPGE  255 (954)
T ss_pred             ecCcc------CCC------cccEEEEEEecC-CCCeeecc---HHHHHHHHHHcCCEEEEEehhhhccC----CCChhh
Confidence            87632      111      224555556666 46999965   99999999999999999985532221    112344


Q ss_pred             cCCCccEEEEecCccc-----ccccccceEEEEeeCCCCcccchhHHHHHHhh-------------------------hh
Q 038416          206 FGSIVPVITLGSISKR-----WIVPGWRLGWLVTSDPNGILQNSGFVDSIKGC-------------------------LN  255 (387)
Q Consensus       206 ~~~~~~~~~i~s~sK~-----~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~-------------------------~~  255 (387)
                      +..|   +++++.+|+     ||.|  -.|++.+++        ++.+.+.-.                         +.
T Consensus       256 ~GaD---i~vgs~qkfg~P~g~GGP--~aGflavr~--------~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRr  322 (954)
T PRK05367        256 MGAD---IAVGSAQRFGVPMGFGGP--HAAYFAVRD--------AYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRR  322 (954)
T ss_pred             cCCC---EEEeeCcccCCCCCCCCC--CEEEEEECH--------HHHhhCCCCeeeeecccCCCcccccccccccccccc
Confidence            5554   889999998     4444  489988875        232222100                         00


Q ss_pred             ccCCcchHHH---HHHHHH--hhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCc
Q 038416          256 AASHPVTFIQ---AAVPRI--VDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGD  330 (387)
Q Consensus       256 ~~~~~~~~~~---~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  330 (387)
                      -..+++.-..   .++.+.  +.-.....++++.++...++.++++.|+.. |+...+.+..+ .+.++++.       +
T Consensus       323 ekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~-G~~~~~~~~f~-~~~~~~~~-------~  393 (954)
T PRK05367        323 EKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRAL-GLEVVHDSFFD-TLTVEVGG-------D  393 (954)
T ss_pred             cccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc-CcccCCCCCCC-eEEEeCCC-------C
Confidence            0011111111   111111  122345678888899999999999999874 77744332222 22333321       4


Q ss_pred             HHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHH
Q 038416          331 DLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIK  377 (387)
Q Consensus       331 ~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~  377 (387)
                      ..++...+ .++||.+..-    .++.+|+|+  ..++++|+.+++.|.
T Consensus       394 ~~~i~~~l-~~~gi~~~~~----~~~~l~is~~e~~t~~did~l~~~l~  437 (954)
T PRK05367        394 AAAVLARA-LAAGINLRRV----DDDHVGISLDETTTREDLAALLAVFG  437 (954)
T ss_pred             HHHHHHHH-HHCCceeccc----cCCEEEEEecccCCHHHHHHHHHHHc
Confidence            55666666 5669887332    156799999  468999999999996

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=99.51  E-value=1e-12  Score=119.58  Aligned_cols=234  Identities=17%  Similarity=0.184  Sum_probs=141.0

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc-------C-CC
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA-------R-PG   97 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-------~-~g   97 (387)
                      .+|.+.+++++++.....  ........+.+.++++.+.+..+  -..+.+++++++++|++.+++...       . ..
T Consensus        33 ~~p~i~~ai~~~~~~~~~--~~~~~~~~~~~~~la~~L~~~~p--~~~~~v~f~~sGseAve~Alkla~~~~~~~~~~~r  108 (339)
T PF00202_consen   33 NHPEIAEAIAEQANKLNY--VSFSGFTHPEAAELAEKLAELFP--GGLDRVFFANSGSEAVEAALKLARQYHNKRAYTGR  108 (339)
T ss_dssp             T-HHHHHHHHHHHHHCSS--CSTTTSEEHHHHHHHHHHHHHSS--TTEEEEEEESSHHHHHHHHHHHHHHHHHHTHHHTT
T ss_pred             CccccchhHHHHhhhccc--ccccceeccchhhhhhhhhhccc--cccceeeeccCchHHHHHHHHHhhcccccccccCC
Confidence            457888999998876422  22122334556667776666553  245799999999999999999866       2 23


Q ss_pred             CeEEEcCCCCcchHHHhhccCCC------------ceeeeeccCCCCC---ccCChhhHHHh---hccCceEEEEeCC-C
Q 038416           98 ANILIPRPGYPLYEIHAAGSNNN------------LEARHYDLLPEKR---WEVDLDGVEAL---ADENTVAIVIINP-G  158 (387)
Q Consensus        98 ~~vl~~~p~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~---~~~~~~~l~~~---~~~~~~~v~l~~p-~  158 (387)
                      .+|+....+|++...... +..+            ..+..+|.+....   .......+++.   ..++..+.++..| +
T Consensus       109 ~~il~~~~~yHG~t~~~~-s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~  187 (339)
T PF00202_consen  109 RKILAFEGSYHGRTLGAL-SLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALNADEIAAVIVEPIQ  187 (339)
T ss_dssp             TEEEEETTTB-TSSHHHH-HHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSB
T ss_pred             ceEEEeeeeeeccCcccc-cccCCccccccccccccccccccCCccchhhhHHHHHHHHHHHHHhhcCCcEEEEEEeccc
Confidence            789999999987443222 0111            1123333321000   00001112222   2233344555555 5


Q ss_pred             CCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCC
Q 038416          159 NPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDP  237 (387)
Q Consensus       159 nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~  237 (387)
                      ...|.. ++++.+++|.++|++||+++|+||++.++...|..+. ...++-...++   +++|.+ ..|+++|.+++++ 
T Consensus       188 g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a-~~~~gv~PDiv---~~gK~l-~gG~p~sav~~~~-  261 (339)
T PF00202_consen  188 GEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFA-SEHYGVDPDIV---TFGKGL-GGGLPISAVLGSE-  261 (339)
T ss_dssp             TTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSG-HHHHTSSSSEE---EEEGGG-GTTSSEEEEEEEH-
T ss_pred             cccCccccccchhhehcccccccccceecccccccccccCCccc-eecccccCccc---ccccch-hhhhhcccccccc-
Confidence            555654 5677799999999999999999999999876665432 22222222233   456996 4559999999986 


Q ss_pred             CCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccH
Q 038416          238 NGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNE  277 (387)
Q Consensus       238 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~  277 (387)
                             ++.+.+.... ..++..++++..++.+.|+..++
T Consensus       262 -------~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~~~~  295 (339)
T PF00202_consen  262 -------EIMEAFQPGSHGSTFGGNPLSCAAALATLEILEE  295 (339)
T ss_dssp             -------HHHTTSCTTSSTCTTTT-HHHHHHHHHHHHHHHH
T ss_pred             -------hhhccccccccccccccchHhhhhhhhHHHhhcc
Confidence                   5666553332 25667788888888888876444

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=99.45  E-value=1.9e-10  Score=110.63  Aligned_cols=276  Identities=15%  Similarity=0.092  Sum_probs=169.7

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCC--------
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARP--------   96 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~--------   96 (387)
                      +.++.+...+....-+.+...+........+++.+.+++.+.+|++.  ..=.+|+|||.|+..++....+.        
T Consensus        94 ~~~paila~~~a~~~N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~~--~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~  171 (608)
T TIGR03811        94 TLMPAILAYNYAMLWNGNNVAYESSPATSQMEEEVGKEFATLMGYKN--GWGHIVADGSLANLEGLWYARNIKSLPFAMK  171 (608)
T ss_pred             CCHHHHHHHHHHHHhCCCCCccccCchHHHHHHHHHHHHHHHhCCCC--CCeEEeCChHHHHHHHHHHHHHhhhccchhh
Confidence            45555555444444444444555556778999999999999888653  33447889998888766553210        


Q ss_pred             --------------------------------------------C------CeEEEcCCCCcchHHHhhccCCCce---e
Q 038416           97 --------------------------------------------G------ANILIPRPGYPLYEIHAAGSNNNLE---A  123 (387)
Q Consensus        97 --------------------------------------------g------~~vl~~~p~~~~~~~~~~~~~~g~~---~  123 (387)
                                                                  |      -+++++...|+++...+.  ..|+.   +
T Consensus       172 ~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~--ilGlG~~~v  249 (608)
T TIGR03811       172 EVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAAD--IIGIGLDQV  249 (608)
T ss_pred             hccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHH--HcCCCcccE
Confidence                                                        0      057888888999999999  88885   7


Q ss_pred             eeeccCCCCCccCChhhHHHhhcc----C--ceEEEEeCCCCCccccCCHHHHHHHHHHH---HhcCc--EEeecccccc
Q 038416          124 RHYDLLPEKRWEVDLDGVEALADE----N--TVAIVIINPGNPCGNVFSYQHLQKIARTA---RNLGI--IVIADEVYNH  192 (387)
Q Consensus       124 ~~~~~~~~~~~~~~~~~l~~~~~~----~--~~~v~l~~p~nptG~~~~~~~~~~l~~~~---~~~~~--~li~D~~~~~  192 (387)
                      +.+|++  +++.+|++.|+++++.    +  +-+|+-+..+..+|.+=|   +++|+++|   +++|+  ++++|.+|++
T Consensus       250 v~VpvD--~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDp---l~eI~~l~~~~~~~gl~~~lHVDAAyGG  324 (608)
T TIGR03811       250 IPVPVD--SNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDG---IDKIVALRNKLMKEGIYFYLHVDAAYGG  324 (608)
T ss_pred             EEeecC--CCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCC---HHHHHHHHHHHHHcCCceeEeeeccccc
Confidence            888875  4568999999998853    2  234565667888999945   55555555   77887  6999999998


Q ss_pred             cc---cCCC--CCcc----------------------------ccccCCCccEEEEecCcccccccccceEEEEeeCCCC
Q 038416          193 LA---FGST--PYVP----------------------------MGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNG  239 (387)
Q Consensus       193 ~~---~~~~--~~~~----------------------------~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~  239 (387)
                      +.   +...  .+.+                            +..+..-  .=+..++||+ +.....+|.++.+++. 
T Consensus       325 ~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~A--DSItvDpHK~-g~~Py~~G~ll~Rd~~-  400 (608)
T TIGR03811       325 YGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEA--ESVTIDPHKM-GYIPYSAGGIVIQDIR-  400 (608)
T ss_pred             hhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCc--eEEEeCcccc-cccCCCeEEEEEeCHH-
Confidence            53   1110  0000                            1111111  1233479999 5666889999998742 


Q ss_pred             cccchhHHHHHHh---hhh------------ccCCcchHHHHHHH--HHhhhc--cHHHHHHHHHHHHHHHHHHHHHhhc
Q 038416          240 ILQNSGFVDSIKG---CLN------------AASHPVTFIQAAVP--RIVDET--NEAFFAKIIGLLKETADICYERIKE  300 (387)
Q Consensus       240 ~~~~~~~~~~~~~---~~~------------~~~~~~~~~~~~~~--~~l~~~--~~~~~~~~~~~~~~~~~~~~~~l~~  300 (387)
                            +.+.+..   +..            .....+.++..++.  ..++..  ..+.+.+..++..+.++++.+.|+.
T Consensus       401 ------~~~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~  474 (608)
T TIGR03811       401 ------MRDVISYFATYVFEKGADIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNN  474 (608)
T ss_pred             ------HHHHHhcCcchhccccccCcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                  2222211   100            01112222222222  222222  4567888888999999999999887


Q ss_pred             C------CCCCC--CCCCCceEEEEEec
Q 038416          301 I------PCITC--PVKPQGAMFVMVKL  320 (387)
Q Consensus       301 ~------~~~~~--~~~~~~g~~~~~~~  320 (387)
                      +      +.+++  +..|.-. .+.+++
T Consensus       475 ~~~~~~~~~~el~~~~~pdln-iV~Fr~  501 (608)
T TIGR03811       475 LEFKVGDKEIEVHPLTKPDFN-MVDYVF  501 (608)
T ss_pred             cccccCCCCeeEEecCCCCcc-eEEEEE
Confidence            3      34553  3345433 344444

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.44  E-value=1e-10  Score=99.97  Aligned_cols=287  Identities=13%  Similarity=0.074  Sum_probs=181.2

Q ss_pred             CCCCCCEEEcCChHHHHHHHHHhhc--CCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc
Q 038416           70 KLSPEDVYLTLGCSQAIEISLSVLA--RPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE  147 (387)
Q Consensus        70 ~~~~~~i~~~~g~~~a~~~~~~~l~--~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  147 (387)
                      +..+.+++++.+++--++.++.+..  ++|++||+++-.-++...+..  .--.++.....+  -...+.+++++++++.
T Consensus        90 GA~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a--~g~~~~~~~~~~--~~~~~~P~~~~~~~~d  165 (407)
T COG3844          90 GARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIA--EGLADLLGIGYD--LEGVIAPRALEEAITD  165 (407)
T ss_pred             cCCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhh--cchhhhhccccc--ceeeeChHHHHHhhcc
Confidence            4678899999999888888887765  458888888766655544433  111112111111  1124567899999998


Q ss_pred             CceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccc-cccc
Q 038416          148 NTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRW-IVPG  226 (387)
Q Consensus       148 ~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~-~~~g  226 (387)
                      ++-+|++++.+.-||+.+.   +.+|-++++++|++++-|-+|+-    |.-+..+...+   -.+-|++..|.+ +.||
T Consensus       166 d~AvV~L~~V~y~TGql~d---m~aiT~~AH~~galv~wDLAHsa----Gavp~~Lh~~g---aDfaigcsyKYLNgGPG  235 (407)
T COG3844         166 DVAVVLLSHVNYKTGQLLD---MRAITALAHQHGALVGWDLAHSA----GAVPVDLHAAG---ADFAIGCSYKYLNGGPG  235 (407)
T ss_pred             ceEEEEeccccccccceee---HHHHHHHHHhcCceEEeehhccc----CCcceeecccC---CCeeeeeeceeccCCCC
Confidence            9999999999999999976   88999999999999999999985    22222232222   338888888987 3677


Q ss_pred             cceEEEEeeCCCCcccchhHHHHHHhhhh----------------ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHH
Q 038416          227 WRLGWLVTSDPNGILQNSGFVDSIKGCLN----------------AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKET  290 (387)
Q Consensus       227 ~r~G~i~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  290 (387)
                      ...|.-+.++..+.+. |.+..++...+.                .-++++..+..++...|.-...-.+.+.+++--..
T Consensus       236 apa~l~v~~~h~e~~~-~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaL  314 (407)
T COG3844         236 APAGLFVAPRHRERSW-PPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLAL  314 (407)
T ss_pred             CceeEEeccccccccc-cccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHH
Confidence            7666666554332211 111111111000                01233334444555555433333455666666667


Q ss_pred             HHHHHHHhhcC-C--CCCCCCCCC----ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee
Q 038416          291 ADICYERIKEI-P--CITCPVKPQ----GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA  363 (387)
Q Consensus       291 ~~~~~~~l~~~-~--~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~  363 (387)
                      ..++++.++.. +  ++++. .|.    -|..+.+..+        ...+..++| .++||..    .|..++.+|++++
T Consensus       315 Td~fieLvEa~~~~~~l~l~-tPr~~~~rGsqvS~~hp--------~~~~V~qaL-i~rGVig----D~R~P~vlRfgft  380 (407)
T COG3844         315 TDYFIELVEARCEYYGLTLV-TPRAHEERGSQVSLYHP--------HGYQVMQAL-IDRGVIG----DFREPDVLRFGFT  380 (407)
T ss_pred             HHHHHHHHHhccccCCcEEe-ccchhhhccceeeEecC--------cHHHHHHHH-HHcCccc----cccCCCeeeecCc
Confidence            77777777652 2  45544 443    2445555554        455666665 6679863    3445789999994


Q ss_pred             ---CChHhHHHHHHHHHHHHHHhhh
Q 038416          364 ---AEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       364 ---~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                         .+-+|+-.+++.|.+++....-
T Consensus       381 PlY~~~~DVw~AV~~L~evL~t~a~  405 (407)
T COG3844         381 PLYVSFVDVWDAVDALEEVLDTLAW  405 (407)
T ss_pred             cceechhHHHHHHHHHHHHHHhhcc
Confidence               5789999999999999987653

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.44  E-value=1.9e-10  Score=99.70  Aligned_cols=336  Identities=15%  Similarity=0.099  Sum_probs=206.0

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCC------CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEc-CChHHHHHHHHHhhcCCCC
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSP------TLGVPSARRGIADYLNRDLPYKLSPEDVYLT-LGCSQAIEISLSVLARPGA   98 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~------~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~-~g~~~a~~~~~~~l~~~g~   98 (387)
                      ++..|.+|+-+.+.+...-+|+.      ..-..+++....+..-+-++..-.++.|-+. -+++.|++.+..++++|++
T Consensus        52 ts~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSPANfavYtall~Ph~  131 (477)
T KOG2467|consen   52 TSRAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSPANFAVYTALLKPHE  131 (477)
T ss_pred             hHHHHHHHHhHHhhcccccCCCcccccCcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCchhhHHHhhhcCCCC
Confidence            56677777777777654334443      2223344333333333334433334444332 3456789999999999999


Q ss_pred             eEE---EcCCCCcc--hHHHhh-ccC--CCceeeeeccCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCccccCCH-H
Q 038416           99 NIL---IPRPGYPL--YEIHAA-GSN--NNLEARHYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCGNVFSY-Q  168 (387)
Q Consensus        99 ~vl---~~~p~~~~--~~~~~~-~~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~-~  168 (387)
                      +|.   +|+-+|-+  |..-.+ .|.  .=.+-.++.+++..+ -+|.+.||+.... ++++++ +..+     .++. =
T Consensus       132 RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG-~IDYD~Le~~A~~frPk~ii-aG~S-----aY~R~~  204 (477)
T KOG2467|consen  132 RIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTG-YIDYDKLEKTATLFRPKLII-AGTS-----AYSRLI  204 (477)
T ss_pred             eeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCCC-ceehHHHHHHHHhcCCcEEE-eccc-----cchhhc
Confidence            886   34444422  211111 000  011223345555555 6899999986544 455554 3322     1222 2


Q ss_pred             HHHHHHHHHHhcCcEEeeccccc-ccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCccc----c
Q 038416          169 HLQKIARTARNLGIIVIADEVYN-HLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQ----N  243 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~----~  243 (387)
                      +.+++.++|.+.|++++.|-+|. +++-.+.-+.|+..-     .|+.++.+|+  +.|.|.|.|..++...-.+    +
T Consensus       205 DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~-----DiVTTTTHKs--LRGPRg~mIFyRkGvk~~~~k~g~  277 (477)
T KOG2467|consen  205 DYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYC-----DIVTTTTHKS--LRGPRGAMIFYRKGVKSIKPKQGK  277 (477)
T ss_pred             cHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCccccc-----ceeecccccc--ccCCcceeEEEeccCCcCCCCCCC
Confidence            36778888889999999999987 455555444554322     2888899997  7899989988875321111    0


Q ss_pred             h---hHHHHHHhhh--hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEE
Q 038416          244 S---GFVDSIKGCL--NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMV  318 (387)
Q Consensus       244 ~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~  318 (387)
                      +   ++-+++...-  ..-++|.+....+++.+|++.....+....+++.+|++.+.+.|.+. |..+++.......+.+
T Consensus       278 ~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~-Gy~lvtgGTDnHlvLv  356 (477)
T KOG2467|consen  278 EILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALISR-GYKLVTGGTDNHLVLV  356 (477)
T ss_pred             cceechhhhhhhhccccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHc-CceEecCCccceEEEE
Confidence            0   2333333221  12346777888888888888776778889999999999999999988 7776756666667777


Q ss_pred             ecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC-----CCeEEEEe-e-----CChHhHHHHHHHHHHHHH
Q 038416          319 KLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM-----KNWLRIAF-A-----AEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-----~~~~Ri~~-~-----~~~e~~~~~~~~l~~~~~  381 (387)
                      ++...++    + ..-++..++.-+|.++-...++.     ++.+||+. +     ..++||++..+-|.++++
T Consensus       357 DLr~~G~----d-GarvE~vle~~~I~~NKNtvpGD~Sal~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av~  425 (477)
T KOG2467|consen  357 DLRPKGV----D-GARVEKVLELCHIALNKNTVPGDKSALSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAVK  425 (477)
T ss_pred             eccccCC----c-hHHHHHHHHHhhhhhcCCcCCCCccccCCCceeccchhhcccCccHHHHHHHHHHHHHHHH
Confidence            7765443    2 23445555655666554333332     67899998 2     357888888877776654

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=99.43  E-value=2.2e-10  Score=106.86  Aligned_cols=233  Identities=15%  Similarity=0.132  Sum_probs=147.7

Q ss_pred             cHHHHHHHHHHHhhcCCCCCCCC-CEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCC
Q 038416           52 VPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLP  130 (387)
Q Consensus        52 ~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~  130 (387)
                      ..+..+.+|+.+        .++ .-++++|++.++.+++.+++++||.|+++.++|-+....+.  ..|+.++++....
T Consensus        72 i~eAqe~aA~~f--------gAd~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~gli--laGa~Pvyl~p~~  141 (557)
T COG1982          72 IKEAQELAARVF--------GADHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGLI--LAGATPVYLEPSR  141 (557)
T ss_pred             HHHHHHHHHHHh--------CCCceEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHHHH--HcCCceEEecCCC
Confidence            456666666666        334 66788999999999999999999999999999999888888  8999988875432


Q ss_pred             CC--C--ccCChhhHHHhhcc--Cc-eEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccc
Q 038416          131 EK--R--WEVDLDGVEALADE--NT-VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPM  203 (387)
Q Consensus       131 ~~--~--~~~~~~~l~~~~~~--~~-~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~  203 (387)
                      ..  +  .+++.+.+.+++..  .. +++++++|+. -|++++   .+++++.+..+++|+.+|+++....- -.+..+-
T Consensus       142 np~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTY-dGv~~n---~~~i~~~~~~~~a~v~~deah~~~~~-~~~~l~~  216 (557)
T COG1982         142 NPLYGIIGGIPLETFKEALLAHPDAEKLAVITNPTY-DGVCYN---LRKIVELLHHYGAWVLYDEAHPAHFD-FSPMLPE  216 (557)
T ss_pred             CccccccCCCCHHHHHHHHHhChhhheeEEEecCcc-ceEeec---HHHHHHHHhhcCceEEhhhcCccccc-ccccCcc
Confidence            22  1  36788999887643  34 7889999874 788877   77888888899999999999985321 1111111


Q ss_pred             cccCCCccEEEEecCcccccccccceEEEE-eeCCCCcccchhHHHHHHhhhh--ccCCcchHHHHHHHHH---hhhccH
Q 038416          204 GVFGSIVPVITLGSISKRWIVPGWRLGWLV-TSDPNGILQNSGFVDSIKGCLN--AASHPVTFIQAAVPRI---VDETNE  277 (387)
Q Consensus       204 ~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---l~~~~~  277 (387)
                      ... ....++++.|.+|.  ++++..+.++ ..+. ..    --.+++.....  .+.+|+-+..+.+..+   ......
T Consensus       217 ~~~-~~~~~~~tqS~HK~--l~alSQaS~iHv~~~-~~----~~~~r~nea~~~h~STSPsY~l~ASlD~Ar~~~~~~G~  288 (557)
T COG1982         217 SAL-NGGADFVTQSTHKL--LAALSQASMIHVKDG-RA----VNHERFNEALMMHQSTSPSYPLMASLDVARMQEGNAGR  288 (557)
T ss_pred             hhh-hcCceEEEechhhh--hhhhhhhHHHhhCCC-cc----CCHHHHHHHHHHHccCCchHHHHHHHHHHHHhhhhhhH
Confidence            111 13457999999998  4555444444 4321 11    12344444432  2333333333333221   111112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 038416          278 AFFAKIIGLLKETADICYERIKEIPCITCP  307 (387)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  307 (387)
                      .-..+..+..-..++.+++.++.++++.++
T Consensus       289 ~l~~~~~~~~i~~r~~~~~~~~~~~~~~~~  318 (557)
T COG1982         289 ELWQEVIDEAIDFRKALRRLINEIGFFPVL  318 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCeeec
Confidence            222333445555666666666666555544

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=99.33  E-value=3e-10  Score=96.03  Aligned_cols=332  Identities=13%  Similarity=0.086  Sum_probs=192.5

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc---CCCCeEEE
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA---RPGANILI  102 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~---~~g~~vl~  102 (387)
                      .+|++.+|..+.+...+.+...-   ..+|-+....+... +  + .-+-+++++++++|+.++++...   +..| |++
T Consensus        62 chp~VV~A~~kQmat~~tN~RFl---hd~lv~cA~~l~st-l--P-eLsvc~F~NSGSEANDLALRLAR~ftkhqD-vIt  133 (452)
T KOG1403|consen   62 CHPEVVRAGAKQMATISTNNRFL---HDELVQCARTLTST-L--P-ELSVCFFVNSGSEANDLALRLARNFTKHQD-VIT  133 (452)
T ss_pred             CCHHHHHHHHHHHhHhcccchhh---HHHHHHHHHHHhhc-C--C-CceEEEEecCCchhhHHHHHHHHhhcccCc-eEE
Confidence            67888888888777543322222   23443333333321 1  1 23567899999999999998853   3445 455


Q ss_pred             cCCCCcchHHHhh-ccCC----Cc---eeeee---ccCCCCC--c-----------cCChhhHHHhhc----cCc-eEEE
Q 038416          103 PRPGYPLYEIHAA-GSNN----NL---EARHY---DLLPEKR--W-----------EVDLDGVEALAD----ENT-VAIV  153 (387)
Q Consensus       103 ~~p~~~~~~~~~~-~~~~----g~---~~~~~---~~~~~~~--~-----------~~~~~~l~~~~~----~~~-~~v~  153 (387)
                      .+..|++...... .|-+    |.   ++.++   |.++.-+  +           ..-.+.+++.+.    ++. .+.+
T Consensus       134 ldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAf  213 (452)
T KOG1403|consen  134 LDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAF  213 (452)
T ss_pred             EechhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHH
Confidence            5666665332222 1111    11   11111   2211100  0           011123333332    222 2223


Q ss_pred             Ee-CCCCCccccCCHHH-HHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEE
Q 038416          154 II-NPGNPCGNVFSYQH-LQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGW  231 (387)
Q Consensus       154 l~-~p~nptG~~~~~~~-~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~  231 (387)
                      +- +-++-.|+++|+.. .+.+++..+.+|-+.|.||++.+|..-|..+..+..++.-   .-|-++.|. ..+|.+++.
T Consensus       214 iAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fi---PDIVtmgKp-mGNGhPVa~  289 (452)
T KOG1403|consen  214 IAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFI---PDIVTMGKP-MGNGHPVAA  289 (452)
T ss_pred             HHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccc---cchheeccc-CCCCCeeeE
Confidence            33 33777888877666 7999999999999999999999988777766665555432   223466799 578999999


Q ss_pred             EEeeCCCCcccchhHHHHHHhh---hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCC
Q 038416          232 LVTSDPNGILQNSGFVDSIKGC---LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE-IPCITCP  307 (387)
Q Consensus       232 i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~  307 (387)
                      ++..+        ++.+.+...   +..+++.+|.++++..+.+...+.+.+.+..+++-+..+.+...++. .+.+.. 
T Consensus       290 Vattk--------eIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e~E~Lq~ha~~vG~~L~~lL~~~k~kh~~IGD-  360 (452)
T KOG1403|consen  290 VATTK--------EIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCEDENLQEHAQQVGEKLEVLLRRLKQKHECIGD-  360 (452)
T ss_pred             EeccH--------HHHHHhccccceehhccCCCchhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccceec-
Confidence            99876        788888753   12357889999999888888766666766666666555545445443 322321 


Q ss_pred             CCCCceEEEEEecCcccccCC---CcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHHH
Q 038416          308 VKPQGAMFVMVKLNVSMLEDI---GDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       308 ~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~  381 (387)
                       ....|.|+-+++-+......   ..+...+..+-+.++|+++.-+.  ..+.+.|-+  +.++++.++.+..|.++|.
T Consensus       361 -vRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDGP--h~NilKiKPPmCFneena~e~v~~ld~iLT  436 (452)
T KOG1403|consen  361 -VRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADGP--HRNILKIKPPMCFNEENADEFVLGLDEILT  436 (452)
T ss_pred             -cccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecCCC--CCceeecCCCcccChhhHHHHHHHHHHHHH
Confidence             23446676666533222221   12334566677778898875321  134555555  4466666666666666554

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=99.28  E-value=7.7e-10  Score=98.77  Aligned_cols=249  Identities=17%  Similarity=0.111  Sum_probs=164.5

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHH-HHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEE--
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSPTLGVPSAR-RGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANIL--  101 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr-~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl--  101 (387)
                      ..++.+.+++..+.....-..|.-..+.-.-| ..++..+.   + ....+.++++++.+.|+..+..++.+++..|+  
T Consensus        38 ~~~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~~~~~~~~---~-~~~aea~~ivnnn~aAVll~~~al~~~~EvVis~  113 (395)
T COG1921          38 LYSPEAIEAMKEAMRAPVELETDLKTGKRGARLTELAELLC---G-LTGAEAAAIVNNNAAAVLLTLNALAEGKEVVVSR  113 (395)
T ss_pred             cCCHHHHHHHHHHhcccceeeeecccchhhHHHHHHHHHHh---c-ccchhheeeECCcHHHHHHHHhhhccCCeEEEEc
Confidence            67888999999988764222443322211111 13333332   2 33578999999999999999999987544443  


Q ss_pred             ---EcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCcccc--CCHHHHHHHHHH
Q 038416          102 ---IPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNV--FSYQHLQKIART  176 (387)
Q Consensus       102 ---~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~--~~~~~~~~l~~~  176 (387)
                         ++ ++++++.+..+  ..|.+.+.+....    .....+++.++.+++.+++-++.+|- |..  ++   .++++++
T Consensus       114 g~lV~-gg~~~v~d~~~--~aG~~l~EvG~tn----~t~~~d~~~AIne~ta~llkV~s~~~-~f~~~l~---~~~l~~i  182 (395)
T COG1921         114 GELVE-GGAFRVPDIIR--LAGAKLVEVGTTN----RTHLKDYELAINENTALLLKVHSSNY-GFTGMLS---EEELVEI  182 (395)
T ss_pred             ccccc-CCCCChhHHHH--HcCCEEEEecccC----cCCHHHHHHHhccCCeeEEEEeeccc-ccccccc---HHHHHHH
Confidence               23 58888999999  9999998875422    35788999999999999887777653 332  33   6778899


Q ss_pred             HHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhh-h
Q 038416          177 ARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL-N  255 (387)
Q Consensus       177 ~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~-~  255 (387)
                      |+++|+++++|.+.....-.......+..+..+   .+++|-.|.  +.|.+.|.|++++        ++++++++.- .
T Consensus       183 a~~~~lpvivD~aSg~~v~~e~~l~~~la~GaD---LV~~SgdKl--lgGPqaGii~GkK--------elI~~lq~~~l~  249 (395)
T COG1921         183 AHEKGLPVIVDLASGALVDKEPDLREALALGAD---LVSFSGDKL--LGGPQAGIIVGKK--------ELIEKLQSHPLK  249 (395)
T ss_pred             HHHcCCCEEEecCCccccccccchhHHHhcCCC---EEEEecchh--cCCCccceEechH--------HHHHHHHhhhhh
Confidence            999999999999997654322222223333333   888899998  5678899999987        8998887652 3


Q ss_pred             ccCCcchHHHHHHHHHhhhccH----HHHHHHHHHHHHHHHHHHHHhhcC
Q 038416          256 AASHPVTFIQAAVPRIVDETNE----AFFAKIIGLLKETADICYERIKEI  301 (387)
Q Consensus       256 ~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~  301 (387)
                      +.........+++..+|+....    .........+.+-.+.+.+..+.+
T Consensus       250 Ralrv~K~tla~l~~aLe~y~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l  299 (395)
T COG1921         250 RALRVDKETLAALEAALELYLQPEILGERLRTLRLLTQPAEALLAQAGRL  299 (395)
T ss_pred             hhhhcCcHhHHHHHHHHHHHcCchhhhhhhHHHHhhccHHHHHHHHhhhh
Confidence            4556667777777777765332    222333333334444444444433

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=99.23  E-value=3.5e-09  Score=92.77  Aligned_cols=177  Identities=18%  Similarity=0.267  Sum_probs=107.8

Q ss_pred             HHHHHHHHhhcCCCCCCCCCEEE---cCChHHHHHHHHHhhcCCCCeEEEc-CCCCcchHHHhh------c--cCCCcee
Q 038416           56 RRGIADYLNRDLPYKLSPEDVYL---TLGCSQAIEISLSVLARPGANILIP-RPGYPLYEIHAA------G--SNNNLEA  123 (387)
Q Consensus        56 r~~ia~~~~~~~~~~~~~~~i~~---~~g~~~a~~~~~~~l~~~g~~vl~~-~p~~~~~~~~~~------~--~~~g~~~  123 (387)
                      |+.+-+-+.+.++    .++.++   -.|+|+|+..++..+++|||+++.. ..-|.......-      +  ..+|+..
T Consensus        56 Rd~le~iyA~vfg----aE~ALVRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y  131 (403)
T PF06838_consen   56 RDKLERIYADVFG----AEDALVRPQFVSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIKY  131 (403)
T ss_dssp             HHHHHHHHHHHCT-----SEEEEETTS-SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-EE
T ss_pred             HHHHHHHHHHHhC----chhhhhcccccchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCcee
Confidence            4444444444333    344444   2568999999999999999999864 444443333332      1  1456667


Q ss_pred             eeeccCCCCCccCChhhHHHhhccCceEEEEeCC-CCCccccCCHHHHHHHHHHHHhc--CcEEeecccccccccCCCCC
Q 038416          124 RHYDLLPEKRWEVDLDGVEALADENTVAIVIINP-GNPCGNVFSYQHLQKIARTARNL--GIIVIADEVYNHLAFGSTPY  200 (387)
Q Consensus       124 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p-~nptG~~~~~~~~~~l~~~~~~~--~~~li~D~~~~~~~~~~~~~  200 (387)
                      ..+++.  ++..+|++.+++++++++++|++.-. ...+=..++.++++++++..++.  ++.+++|.+|++|.-... +
T Consensus       132 ~~v~L~--~dg~~D~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~E-P  208 (403)
T PF06838_consen  132 REVPLT--EDGTIDWEAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQE-P  208 (403)
T ss_dssp             EE--B---TTSSB-HHHHHHHHHTTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS--G
T ss_pred             EEEeec--CCCCcCHHHHHHhhccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccC-c
Confidence            777775  34478999999999999999998865 33344458889999999998864  789999999999873321 2


Q ss_pred             ccccccCCCccEEEEecCcccccccc--cceEEEEeeCCCCcccchhHHHHHHhhh
Q 038416          201 VPMGVFGSIVPVITLGSISKRWIVPG--WRLGWLVTSDPNGILQNSGFVDSIKGCL  254 (387)
Q Consensus       201 ~~~~~~~~~~~~~~i~s~sK~~~~~g--~r~G~i~~~~~~~~~~~~~~~~~~~~~~  254 (387)
                      ..   ...|   +..+|+=|.-| .|  .--||++++.        +++++.....
T Consensus       209 ~~---vGAD---l~aGSLIKNpG-GgiAptGGYIaGr~--------~lVe~~a~RL  249 (403)
T PF06838_consen  209 TE---VGAD---LMAGSLIKNPG-GGIAPTGGYIAGRK--------DLVERAAYRL  249 (403)
T ss_dssp             GG---GT-S---EEEEETTSGGG-TTT-SS-EEEEESH--------HHHHHHHHHH
T ss_pred             cc---cchh---heeccceeCCC-CCccCcCCEEechH--------HHHHHHHhhh
Confidence            22   2333   88999999853 22  3468999876        7888776544

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=99.18  E-value=1.6e-10  Score=91.54  Aligned_cols=82  Identities=23%  Similarity=0.406  Sum_probs=71.1

Q ss_pred             CCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCC--CCCCCCCEEEcCChHHHHHHHHHhhcCCCCe
Q 038416           22 SLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLP--YKLSPEDVYLTLGCSQAIEISLSVLARPGAN   99 (387)
Q Consensus        22 ~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~--~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~   99 (387)
                      +++.+++.+.+++.+.      ..|.+..|..+||+++|+|+.+.++  ..+++++|++|+|+++++..++.+++++||.
T Consensus        70 ~d~~~~~~i~~~~~~~------a~Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~dpGD~  143 (153)
T PLN02994         70 ADICTAEGTIDSFKDI------ALFQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPGDA  143 (153)
T ss_pred             cccCCcHHHHHHHHHH------hcCCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcCCCCE
Confidence            4777777777766663      2477778999999999999999877  5678999999999999999999999999999


Q ss_pred             EEEcCCCCcc
Q 038416          100 ILIPRPGYPL  109 (387)
Q Consensus       100 vl~~~p~~~~  109 (387)
                      |+++.|+|++
T Consensus       144 VlVp~P~Y~~  153 (153)
T PLN02994        144 FLVPTPYYAA  153 (153)
T ss_pred             EEEeCCCCCC
Confidence            9999999963

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=99.17  E-value=3.3e-08  Score=88.79  Aligned_cols=322  Identities=11%  Similarity=0.040  Sum_probs=188.2

Q ss_pred             CCCcHHHHHHHHHHHhhcCCCCC-------CCCCEEEcCChHHHHHHHHHhhc-------CCC-----------C-eEEE
Q 038416           49 TLGVPSARRGIADYLNRDLPYKL-------SPEDVYLTLGCSQAIEISLSVLA-------RPG-----------A-NILI  102 (387)
Q Consensus        49 ~~~~~~lr~~ia~~~~~~~~~~~-------~~~~i~~~~g~~~a~~~~~~~l~-------~~g-----------~-~vl~  102 (387)
                      .+-..+|+..+.+|+.+.++.+.       .+..=++..+++++...++.+..       +.+           + .+.+
T Consensus       108 sPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~  187 (511)
T KOG0628|consen  108 SPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYC  187 (511)
T ss_pred             CcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEe
Confidence            34568999999999988776431       12223344445555555554421       111           1 3446


Q ss_pred             cCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCc-----eEEEEeCCCCCccccCCHHHHHHHHHHH
Q 038416          103 PRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENT-----VAIVIINPGNPCGNVFSYQHLQKIARTA  177 (387)
Q Consensus       103 ~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~v~l~~p~nptG~~~~~~~~~~l~~~~  177 (387)
                      .+.+|.+....+.  ..+.++..++.+.  +++++.+.|.++++++.     ..+++.+. .-||.+ .-+++.+|..+|
T Consensus       188 SDqahssveka~~--i~~VklR~l~td~--n~~mr~~~L~~AIe~D~arGlIPf~v~at~-GTT~~c-a~D~l~elg~Vc  261 (511)
T KOG0628|consen  188 SDQAHSSVEKACL--IAGVKLRALPTDE--NFGMRGDTLRKAIEEDIARGLIPFFVCATL-GTTSSC-AFDELEELGPVC  261 (511)
T ss_pred             cCcccchHHHhHh--hcceeEEEeeccc--CcCCCHHHHHHHHHHHHhCCCccEEEEEee-cCcccc-ccccHHHhcchh
Confidence            7889999999888  8899988888753  88999999999996531     22222222 224433 237899999999


Q ss_pred             HhcCcEEeecccccccccCCCCCcccc-ccCCCccEEEEecCcccccccccceEEEEeeCCCCcc----cchhHHHHHHh
Q 038416          178 RNLGIIVIADEVYNHLAFGSTPYVPMG-VFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGIL----QNSGFVDSIKG  252 (387)
Q Consensus       178 ~~~~~~li~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~----~~~~~~~~~~~  252 (387)
                      +++|+|+++|.+|++-.+....+..+. .++.-+  -+-...||+ ++--+.+..+-..+...+.    -+|.+.+.-..
T Consensus       262 ~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aD--Sfn~n~hK~-~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~  338 (511)
T KOG0628|consen  262 REEGLWLHVDAAYAGSAFICPEFRYLMRGIEYAD--SFNFNPHKW-LLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQ  338 (511)
T ss_pred             hhcCEEEEeehhhccccccCHHHHHHhhcchhhc--cccCChhhe-eEEeeeeecceeecCceeeeeeecChHhhcchhh
Confidence            999999999999997555443333321 111111  112345666 3444555554444321110    01222111111


Q ss_pred             hhh----ccCCcchHHHHHHHHH--hhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccccc
Q 038416          253 CLN----AASHPVTFIQAAVPRI--VDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE  326 (387)
Q Consensus       253 ~~~----~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~  326 (387)
                      ...    ...-|..-....+..+  +....-+.+.+..++..+.++.+.+.+.+-+.+++.....-|. +++++...+  
T Consensus       339 ~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~~lgL-vcFRlk~~N--  415 (511)
T KOG0628|consen  339 GSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVNKRILGL-VCFRLKGDN--  415 (511)
T ss_pred             ccCCCccccccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeecccccce-eEEeecCCc--
Confidence            000    0001111111222222  2222346677777777888888877777777888664455554 444554321  


Q ss_pred             CCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee---CChHhHHHHHHHHHHHHHHhhh
Q 038416          327 DIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA---AEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       327 ~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~---~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                        .....++.++-....|.+.|... ...-.+|++++   ++.++++.+.+.|.+....+..
T Consensus       416 --~~ne~Ll~~in~~g~i~l~~~~l-~gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l~~  474 (511)
T KOG0628|consen  416 --EINEALLNRLNSSGRIHLVPASL-HGKFVLRFAVCSPLTNESDIDEAWKIIFEAADELFE  474 (511)
T ss_pred             --HHHHHHHHHHHhcCcEEEEEeee-cceEEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence              13457777776777788887542 22346899984   4678999999999988877543

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.14  E-value=6.9e-08  Score=96.67  Aligned_cols=309  Identities=14%  Similarity=0.122  Sum_probs=175.2

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCCCC-----C----cHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSPTL-----G----VPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA   94 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~~~-----~----~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~   94 (387)
                      .-.|+.+.+.+.+.-+  .+..|.|.+     |    .-++...++++.      +.+..+.-+..++|.+.++++.+..
T Consensus        76 ~~~p~~i~r~v~~~p~--~~TaytPyQ~EisQG~Le~l~e~Qt~i~eLt------Gm~~aNaSl~d~atA~aEa~~~a~~  147 (939)
T TIGR00461        76 TILPPVIQRNLLENPG--WYTAYTPYQPEISQGRLEALLNFQTVVSDLT------GLPVANASLLDEGTAAAEAMALSFN  147 (939)
T ss_pred             CcCChHHHHHHHhCch--hhhcCCCCChhhhhHHHHHHHHHHHHHHHHH------CCChhhhhccchhhHHHHHHHHHHH
Confidence            3356666654443211  133455432     3    234455566666      4566788888888888887776642


Q ss_pred             ---CCCCeEEEcCCCCcchHHHhh--ccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHH
Q 038416           95 ---RPGANILIPRPGYPLYEIHAA--GSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQH  169 (387)
Q Consensus        95 ---~~g~~vl~~~p~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~  169 (387)
                         +++++|++++..|+.+...++  ....|++++.++          +++|++.+  ++.++++.+|+. .|.+   ++
T Consensus       148 ~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~----------~~~l~~~~--~~~~v~~q~Pn~-~G~i---ed  211 (939)
T TIGR00461       148 VSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD----------CSDIKKAV--DVFGCLLQYPAT-DGSI---LD  211 (939)
T ss_pred             hhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEc----------HHHHhhcC--CEEEEEEECCCC-CeEE---ec
Confidence               234789999999987663333  115677777653          34565555  467778888875 8888   46


Q ss_pred             HHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccc----cccceEEEEeeCCCCc-----
Q 038416          170 LQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIV----PGWRLGWLVTSDPNGI-----  240 (387)
Q Consensus       170 ~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~----~g~r~G~i~~~~~~~~-----  240 (387)
                      +++|++++++.|.+++++.-...+.    ...+...+..|   |++++-.+ ||.    +|.-.|++.+++.-..     
T Consensus       212 ~~~i~~~~h~~gal~~~~ad~~al~----ll~~Pge~GaD---i~vg~~q~-fg~p~g~GGP~aG~~a~~~~l~r~lPgr  283 (939)
T TIGR00461       212 YKQLIDALHSHKSLVSVAADLMALT----LLTPPGHYGAD---IVLGSSQR-FGVPMGYGGPHAAFFAVKDEYNRKMPGR  283 (939)
T ss_pred             HHHHHHHHHHcCCEEEEEechHHhC----CcCCHHHcCCc---EEeeCCCc-cCCCCCCCCCceeeeeecHhhHhhCCCC
Confidence            9999999999999999854333221    11222233333   44553322 232    3444666665441100     


Q ss_pred             --------ccchhHH-------HHHHhhhhcc-CCcchHHHHH-HHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 038416          241 --------LQNSGFV-------DSIKGCLNAA-SHPVTFIQAA-VPRIVDETNEAFFAKIIGLLKETADICYERIKEIPC  303 (387)
Q Consensus       241 --------~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  303 (387)
                              .+++.+.       ..+++.+.++ .+.+....+. +...+.-+..+.++++.++...++.++.+.|++. |
T Consensus       284 ivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~-G  362 (939)
T TIGR00461       284 IVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLEND-P  362 (939)
T ss_pred             ceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC-C
Confidence                    0000000       0011111111 1111112221 1112333456789999999999999999999885 7


Q ss_pred             CCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHH
Q 038416          304 ITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIK  377 (387)
Q Consensus       304 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~  377 (387)
                      ++... +....-+.++++.      .+..++...+ .++||.+...    ..+.+++|+  .+++++++.+++.+.
T Consensus       363 ~~~~~-~~fF~~~~v~~~~------~~~~~i~~~~-~~~gi~l~~~----~~~~i~~s~~E~~t~~di~~l~~~~~  426 (939)
T TIGR00461       363 HELIN-KTWFDTLTVKVGN------GISSELLKAA-EEFNINLRAV----DTTTVGIALDETTTKADVENLLKVFD  426 (939)
T ss_pred             CcccC-CCccceEEEEeCC------CCHHHHHHHH-HHCCCeeeec----CCCEEEEEeecCCCHHHHHHHHHHhc
Confidence            88553 3111122333321      1345666665 5569987653    246899999  468999999999884

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=99.08  E-value=1.1e-07  Score=85.03  Aligned_cols=315  Identities=16%  Similarity=0.078  Sum_probs=187.2

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCC-hHHHHHHH---HHhh-cCCC----CeEEEcCCCCcchHHHhhccCCC
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLG-CSQAIEIS---LSVL-ARPG----ANILIPRPGYPLYEIHAAGSNNN  120 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g-~~~a~~~~---~~~l-~~~g----~~vl~~~p~~~~~~~~~~~~~~g  120 (387)
                      +|+.++-..+.+|+.+.-|    -|.|-+.+. ++++=.+-   ++.. ...|    +.+++++..|....-.+.  ..|
T Consensus       105 qG~l~li~~Lq~~L~~ITG----~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAa--m~G  178 (496)
T COG1003         105 QGYLELIYELQEWLKEITG----MDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAA--MAG  178 (496)
T ss_pred             HHHHHHHHHHHHHHHHhcC----CceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHh--hcC
Confidence            4777888888889877433    355655432 23333322   2232 2222    589999999987777788  899


Q ss_pred             ceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCC
Q 038416          121 LEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPY  200 (387)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~  200 (387)
                      ++++.++.+.  +..+|+++|++.+.+++.++.+++|+. .|+.  .+.+++|+++.+++|..|..|.+--....+-..+
T Consensus       179 ~~VV~V~~~~--~G~VDlddLk~k~~~~~AalMiTnPsT-~GvF--E~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rP  253 (496)
T COG1003         179 FKVVVVKCDE--NGNVDLDDLRAKAEDNLAALMITNPST-LGVF--EEDIREICEIVHEAGGQVYYDGANLNAIVGLARP  253 (496)
T ss_pred             ceEEEEecCC--CCCccHHHHHHHhccceeEEEeccCcc-cccc--hhhHHHHHHHHHHcCCEEEecCcchhhhhccccc
Confidence            9999999864  347899999999999999999999985 6665  4669999999999999999999877544332222


Q ss_pred             ccccccCCCccEEEEecCccccc----ccccceEEEEeeCCC-Ccccchh----HHH---H-HHh--h-hhccCCcchHH
Q 038416          201 VPMGVFGSIVPVITLGSISKRWI----VPGWRLGWLVTSDPN-GILQNSG----FVD---S-IKG--C-LNAASHPVTFI  264 (387)
Q Consensus       201 ~~~~~~~~~~~~~~i~s~sK~~~----~~g~r~G~i~~~~~~-~~~~~~~----~~~---~-~~~--~-~~~~~~~~~~~  264 (387)
                      ..+   ..+   ++=.-++|.|.    ..|...|-+.+...- ...-.|.    ..+   . -..  . ....+..+...
T Consensus       254 Gd~---G~D---V~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~i  327 (496)
T COG1003         254 GDM---GFD---VVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSASI  327 (496)
T ss_pred             ccc---ccc---eEEeecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCcchH
Confidence            222   221   22234666663    334445555442100 0000000    000   0 000  0 00011122222


Q ss_pred             HHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC--ceEEEEEecCcccccCCCcHHHHHHHHHHhc
Q 038416          265 QAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ--GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEE  342 (387)
Q Consensus       265 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  342 (387)
                      .......+.-...+.+++.-+...-+++++.++|+..  ..+...+.  ...=+.+.......+......+++.+| -++
T Consensus       328 l~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~~--y~~~y~~~~~~~HE~ild~r~l~~~~Gv~~~DvAKrL-lD~  404 (496)
T COG1003         328 LPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKGY--YPVPYTGENRVAHECILDARPLKKETGVRALDVAKRL-LDY  404 (496)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhhc--CccccCCCCcceeEEEeechHhHhhcCCcHHHHHHHH-Hhc
Confidence            2223333333456778888888889999999999962  22121222  122223333321111112556777776 567


Q ss_pred             CeEEEcCCccC--CCCeEEEEee--CChHhHHHHHHHHHHHHHHhhh
Q 038416          343 SVIILPGRTVG--MKNWLRIAFA--AEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       343 gi~v~~g~~~~--~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      |+.- |-..|.  ..+.+-|=+.  -+++++++.++++.++.++.++
T Consensus       405 GfHa-PT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~~  450 (496)
T COG1003         405 GFHA-PTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREEADA  450 (496)
T ss_pred             CCCC-CcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            9875 334454  3677777773  4678999999998888777654

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=99.06  E-value=1.2e-07  Score=87.01  Aligned_cols=282  Identities=18%  Similarity=0.181  Sum_probs=142.2

Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc---CCCCeEEEcCCCCcchHHHhh--ccCCCceeeeecc
Q 038416           54 SARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA---RPGANILIPRPGYPLYEIHAA--GSNNNLEARHYDL  128 (387)
Q Consensus        54 ~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~---~~g~~vl~~~p~~~~~~~~~~--~~~~g~~~~~~~~  128 (387)
                      ++...++++.      +.+..+.-+-.+++.+-++++.+..   +++++|+++...|+.+...++  ....|++++.++.
T Consensus       114 e~Qs~i~eLT------GmdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~  187 (429)
T PF02347_consen  114 EYQSMICELT------GMDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPL  187 (429)
T ss_dssp             HHHHHHHHHH------TSSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-B
T ss_pred             HHHHHHHHhh------CCCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecc
Confidence            4455555555      3333445566677766666655542   334699999999998876433  1157888888877


Q ss_pred             CCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC
Q 038416          129 LPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS  208 (387)
Q Consensus       129 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~  208 (387)
                      ....  ..|        ++++.+|++.+|+. .|.+   +++++|.++++++|.++++ .+.- ....+  ..+-..+..
T Consensus       188 ~~~~--~~d--------~~~~a~v~vq~Pn~-~G~~---ed~~~i~~~~h~~gal~~~-~ad~-~aL~~--l~~Pge~GA  249 (429)
T PF02347_consen  188 DEDG--TTD--------DDDTAAVMVQNPNT-FGVF---EDIKEIADIAHAAGALVIV-GADP-NALGG--LKSPGEYGA  249 (429)
T ss_dssp             BTTC--SB---------STTEEEEEEESS-T-TSB-----THHHHHHHHHHTT-EEEE-CGGC-CGCCT--C--GGGGT-
T ss_pred             cccC--Ccc--------ccCeEEEEeecCCC-CceE---eeHHHHHHHHHHcCCEEEE-ecCH-HHHhC--cCChhhcCc
Confidence            5332  223        56889999999986 7888   5599999999999998886 3322 11111  222233443


Q ss_pred             CccEEEEecCccccc----ccccceEEEEeeCCCCcc--------------cchhH-------HHHHHhhhhcc-CCcch
Q 038416          209 IVPVITLGSISKRWI----VPGWRLGWLVTSDPNGIL--------------QNSGF-------VDSIKGCLNAA-SHPVT  262 (387)
Q Consensus       209 ~~~~~~i~s~sK~~~----~~g~r~G~i~~~~~~~~~--------------~~~~~-------~~~~~~~~~~~-~~~~~  262 (387)
                      |   +++++ +|.||    .+|.-+|++.+++.- ..              +++.+       -..+++.+.++ .+.+.
T Consensus       250 D---I~vg~-~Q~fg~p~~~GGP~~G~~a~~~~l-~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnq  324 (429)
T PF02347_consen  250 D---IVVGE-HQTFGIPMGFGGPGAGFFAVREDL-VRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQ  324 (429)
T ss_dssp             S---EEEEC-CTTTT---CCC-S--EEEEE-GGG-GGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-
T ss_pred             c---EEeeC-CCCCcccCCCCCCCeeeEEEhhhh-hhhCCCceecccccccccceeeeccccccccccccchhhhhhhhH
Confidence            3   55665 66665    345667888776521 00              00000       00112222111 12222


Q ss_pred             HHH-HHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHh
Q 038416          263 FIQ-AAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKE  341 (387)
Q Consensus       263 ~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~  341 (387)
                      ... .++...+.....+.+.+..+....++.++.+.|+++.+.. +..+.---++....+         . ....++++ 
T Consensus       325 aL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~-~~~~~f~e~v~~~~~---------~-~~~~~l~~-  392 (429)
T PF02347_consen  325 ALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKIYGLP-FDNPFFFEFVVVFSK---------D-KEVEELLK-  392 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTBEC-SSSSSBSSEEEEESS-----------HHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cCCCCceeeeeecCC---------c-HHHHHHHH-
Confidence            222 2233344445678899999999999999999999863444 212222222222221         1 22222322 


Q ss_pred             cCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHH
Q 038416          342 ESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERI  376 (387)
Q Consensus       342 ~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l  376 (387)
                      +++.-.-+..+...+++-+++.  .++++++++++.+
T Consensus       393 ~~~~~gl~~~~~~~~~~li~~TE~~t~edid~lv~~f  429 (429)
T PF02347_consen  393 RGIEGGLNLRYPDDGALLICVTETRTKEDIDRLVEAF  429 (429)
T ss_dssp             TT----EEEGGG-SSEEEEE--TT--HHHHHHHHH--
T ss_pred             HHHhcCCCccccCCCeEEEEccCCCCHHHHHHHHhcC
Confidence            2333221111222458888883  5789999998764

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=99.05  E-value=1.4e-07  Score=82.25  Aligned_cols=313  Identities=16%  Similarity=0.136  Sum_probs=189.2

Q ss_pred             CCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC-----CCCeEEEcCCCCcch-HHHhhccC
Q 038416           45 CYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR-----PGANILIPRPGYPLY-EIHAAGSN  118 (387)
Q Consensus        45 ~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-----~g~~vl~~~p~~~~~-~~~~~~~~  118 (387)
                      .|..+.++..|+.++.+.++        -+.++.|.-+..|=++.+..+++     ||.+.+++.+.|+.. +...+  .
T Consensus        74 AYagsrs~~~L~~avkdifG--------fq~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~--~  143 (471)
T COG3033          74 AYAGSRSYYALADAVKDIFG--------FQYTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHIQ--I  143 (471)
T ss_pred             hhcccccHHHHHHHHHHhcC--------ceeeeeccCCccHHHHHHHHHhhhccccCCccccccccceecchhHHHH--h
Confidence            57777788888888888772        36777787777777777776664     455666666777654 44455  5


Q ss_pred             CCceeeeeccCCCCC--------ccCChhhHHHhhcc----CceEEEEeC-CCCCccccCCHHHHHHHHHHHHhcCcEEe
Q 038416          119 NNLEARHYDLLPEKR--------WEVDLDGVEALADE----NTVAIVIIN-PGNPCGNVFSYQHLQKIARTARNLGIIVI  185 (387)
Q Consensus       119 ~g~~~~~~~~~~~~~--------~~~~~~~l~~~~~~----~~~~v~l~~-p~nptG~~~~~~~~~~l~~~~~~~~~~li  185 (387)
                      .|..+..++++...+        ..+|++.|++.+++    +...|+++- .|...|+..|.+.+++..++|++|+++++
T Consensus       144 ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv  223 (471)
T COG3033         144 NGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVV  223 (471)
T ss_pred             cCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEE
Confidence            677777666543221        24688999998864    344454443 35588999999999999999999999999


Q ss_pred             ecccccc-cccC----CCCCc--cc-------cccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHH
Q 038416          186 ADEVYNH-LAFG----STPYV--PM-------GVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIK  251 (387)
Q Consensus       186 ~D~~~~~-~~~~----~~~~~--~~-------~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~  251 (387)
                      .|.+-.- -.|-    ..++.  ++       .++.+    -.+.|..|. ++..+ .|++...|++ .+   ++....+
T Consensus       224 ~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD----~~~mS~KKD-~lvnm-GGfl~~~D~~-~f---Dvy~~~~  293 (471)
T COG3033         224 MDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYAD----GCTMSAKKD-GLVNM-GGFLCFKDDS-FF---DVYEECR  293 (471)
T ss_pred             eehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhh----hheeecccc-ceecc-ccEEEecCcc-HH---HHHHHHH
Confidence            9976431 1110    01111  11       11111    345577787 54433 2666666532 11   3444444


Q ss_pred             hhh---h---ccCCcchHHHHHHHHHhhh-ccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcc-
Q 038416          252 GCL---N---AASHPVTFIQAAVPRIVDE-TNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVS-  323 (387)
Q Consensus       252 ~~~---~---~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~-  323 (387)
                      ...   .   ..++.+.-...+++.-|.+ ....|+..++.+++..    .+.|.+. |+.++ .|.+|.-++++..+. 
T Consensus       294 ~~~V~~eG~~tYGgl~GrdmealAvGL~e~~~~~yl~~Rv~Qv~YL----~~~l~~~-GVpi~-~paGGHavfvda~~~l  367 (471)
T COG3033         294 TLVVVQEGFPTYGGLAGRDMEALAVGLREGVNFDYLAHRVAQVQYL----ADGLEEA-GVPIV-QPAGGHAVFVDAGKFL  367 (471)
T ss_pred             hheEeeccccccCcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHH----HHHHHhc-CCeeE-ecCCCceEEeehhhhc
Confidence            321   1   1122233334444444443 2357777777666654    4566666 77634 788888888765331 


Q ss_pred             -ccc-CCCcHHHHHHHHHHhcCeEEEcCCccCC-------------CCeEEEEee---CChHhHHHHHHHHHHHHHHh
Q 038416          324 -MLE-DIGDDLEFCLKLAKEESVIILPGRTVGM-------------KNWLRIAFA---AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       324 -~~~-~~~~~~~~~~~ll~~~gi~v~~g~~~~~-------------~~~~Ri~~~---~~~e~~~~~~~~l~~~~~~~  383 (387)
                       ..| +--.+..++.+|.++.||-..--+.|..             -.-+|+.+-   -+.+-++-.++.++++.+.-
T Consensus       368 phip~eqFpaqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~~  445 (471)
T COG3033         368 PHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKENA  445 (471)
T ss_pred             CCCChhhCcHHHHHHHHHHHhCeeeeeeeceecccCCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHhcc
Confidence             111 1113567788888899998764333321             146999993   37788888888887776554

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=99.01  E-value=5.9e-10  Score=98.67  Aligned_cols=251  Identities=17%  Similarity=0.146  Sum_probs=54.4

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCCCCCc-----HHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCe
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSPTLGV-----PSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGAN   99 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~~~~~-----~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~   99 (387)
                      +.++.+.+++.+...+-.-..|.-..|.     ..+.+.++...        ..++.+++++...|+..++.++.. |..
T Consensus        17 ~l~~~a~~a~~~~a~~Y~nLE~dl~~G~Rg~R~~~v~~ll~~lt--------gAeaA~VvNnnaAAv~L~l~~la~-~~E   87 (367)
T PF03841_consen   17 PLSEEAIEAVAEVASGYSNLEYDLETGKRGSRYAHVEELLCELT--------GAEAALVVNNNAAAVLLALNTLAK-GKE   87 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc--------cccccccccccccccccccccccc-ccc
Confidence            6778888888877653111123221111     22233333332        567888888889999999998863 556


Q ss_pred             EEEcCC------CCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCC--ccccCCHHHHH
Q 038416          100 ILIPRP------GYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNP--CGNVFSYQHLQ  171 (387)
Q Consensus       100 vl~~~p------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~np--tG~~~~~~~~~  171 (387)
                      |++..-      +-+.+.+.++  ..|.+++.+-...    ...+++.+++++++|.+++..+++|-  .|..-. -.++
T Consensus        88 vIvsRGelVeiGgsFRip~vm~--~sGa~lvEVGttN----~t~~~Dye~AI~e~Ta~ll~Vh~Sn~~i~GFt~~-~~~~  160 (367)
T PF03841_consen   88 VIVSRGELVEIGGSFRIPDVMR--QSGARLVEVGTTN----RTHLSDYEKAITENTAALLKVHTSNFRIQGFTGE-VSLE  160 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccc--ccccccccccccc----cccccccccccccccccccccccccccccccccc-ccHH
Confidence            665432      2223556777  7888888775422    34678889999999999999998774  332211 2489


Q ss_pred             HHHHHHHhcCcEEeecccccccc----cCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          172 KIARTARNLGIIVIADEVYNHLA----FGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       172 ~l~~~~~~~~~~li~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      ++++++++|++++++|...+.+.    +.-.....+..+-..+-.+++.|-.|.  +.|.+.|.+++.+        +++
T Consensus       161 el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKl--LGGPQaGiI~Gkk--------~lI  230 (367)
T PF03841_consen  161 ELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKL--LGGPQAGIIVGKK--------ELI  230 (367)
T ss_dssp             HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSS--SSS-S-EEEEEEH--------HHH
T ss_pred             HHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCc--CCCCCeEEEEeCH--------HHH
Confidence            99999999999999998875432    111112223333333334888888898  5567789999987        899


Q ss_pred             HHHHhhh-hccCCcchHHHHHHHHHhhhccH-----------HHHHHHHHHHHHHHHHHHHHhhcC
Q 038416          248 DSIKGCL-NAASHPVTFIQAAVPRIVDETNE-----------AFFAKIIGLLKETADICYERIKEI  301 (387)
Q Consensus       248 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~  301 (387)
                      +++++.. ............++.+.|+.+..           ..+....+.++.+++.+...|+..
T Consensus       231 ~~lk~~pl~RalrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~~~~~L~~rA~~l~~~l~~~  296 (367)
T PF03841_consen  231 EKLKKHPLGRALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQSLEELRARAERLAAQLKAA  296 (367)
T ss_dssp             HHHHHHHHTTT-B--HHHHHHHHHHHHH--------------------------------------
T ss_pred             HHHhhCCCcceEeeCHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccc
Confidence            9998752 34556677777777776664321           234455566666666666666653

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=98.96  E-value=4.5e-07  Score=79.74  Aligned_cols=317  Identities=13%  Similarity=0.069  Sum_probs=178.4

Q ss_pred             CCcHHHHHHHHHHhcCCC--------CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCC
Q 038416           25 SDSTVAEDAVVDALRTAH--------YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARP   96 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~--------~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~   96 (387)
                      -.|+++++..++-+.+-.        .+|.+.  ....+-+...+.+++.++++-+.+=+++-.|++....++...|+.+
T Consensus        15 ~lp~~vL~~a~~e~~~~~g~g~svme~SHRsk--~~~~v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~~~p~nLl~~   92 (365)
T COG1932          15 ALPPEVLQQAQKELLDWNGLGMSVMEISHRSK--EFKNVLEEAEKDLRELLNIPDDYKVLFLQGGATGQFAMAPMNLLGK   92 (365)
T ss_pred             cCCHHHHHHHHHHHhhhccCCcceeeeccccH--HHHHHHHHHHHHHHHHhCCCCCceEEEEcCccHHHHHHHHHhhhcc
Confidence            467777777776655421        122222  2233334444445555565544433445566799999999999865


Q ss_pred             CCe--EEEcCCCCcchHHHhhccCCCceeeeec-cCCCCCcc--CChhhHHHhhccCceEEEEeCCCCCccccCCHHHHH
Q 038416           97 GAN--ILIPRPGYPLYEIHAAGSNNNLEARHYD-LLPEKRWE--VDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQ  171 (387)
Q Consensus        97 g~~--vl~~~p~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~--~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~  171 (387)
                      +..  |..-...-.++. .++  ..+.++.... ...+.+++  ++++.+.  +.++..-|.+|+-..-+|+-++.  ..
T Consensus        93 ~~~~yv~~g~Ws~~a~~-eA~--~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~~~~ayv~~~~NeTi~Gv~v~~--~p  165 (365)
T COG1932          93 RGTDYVDTGAWSEFAIK-EAK--KVGKQPKLIDARIEEAGYGSIPDLSKWD--FSDNDAYVHFCWNETISGVEVPE--LP  165 (365)
T ss_pred             cCceeEeeeehhHhHHH-HHH--HhcccccccccceeccCccCCCChhhcc--cCCCccEEEEecCCcccceEccC--CC
Confidence            432  433333333333 233  3443221111 11122222  2222222  33343337777767788988762  11


Q ss_pred             HHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHH
Q 038416          172 KIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIK  251 (387)
Q Consensus       172 ~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~  251 (387)
                      .+..     +.++|+|.+..-+.    ...++..++     ++-.+..|.+|..|  ++.++.++        +.+++..
T Consensus       166 ~~~~-----~~~~v~D~SS~ils----r~iDvsk~d-----viyagaQKnlGpaG--ltvvIvr~--------~~l~r~~  221 (365)
T COG1932         166 DIGS-----DGLLVADASSAILS----RPIDVSKYD-----VIYAGAQKNLGPAG--LTVVIVRP--------DLLERAE  221 (365)
T ss_pred             CCCC-----CceEEEecccHHhc----CCCChhHcc-----eEEEehhhccCccc--eEEEEEcH--------HHHhccc
Confidence            1111     27889998877543    223343343     66678999999998  88888876        4555554


Q ss_pred             hh------------h--hccCCcchHHHHHHHHHhhhcc-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCC--Cce
Q 038416          252 GC------------L--NAASHPVTFIQAAVPRIVDETN-EAFFAKIIGLLKETADICYERIKEIPCITCP-VKP--QGA  313 (387)
Q Consensus       252 ~~------------~--~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~--~~g  313 (387)
                      ..            .  ....+|+.+..+.+...++... +..++...++-+..++.+.+.+++- ++... ..+  .+-
T Consensus       222 ~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s-~fy~~~v~~~~RS~  300 (365)
T COG1932         222 SYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKS-DFYRNLVAKANRSR  300 (365)
T ss_pred             ccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC-Cccccccchhhccc
Confidence            32            0  1234667777776666665533 4667778888888888898888875 33211 112  233


Q ss_pred             EEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHh
Q 038416          314 MFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                      +-+.+++....     -+..++.++ +++|+...-|.  ...+.+|+++.  .+.++++.+++-++.+.+++
T Consensus       301 mnV~f~~~~~~-----ld~~fv~ea-e~~gl~~lkGh--r~vgGmRasiynA~~~e~veaL~~fm~~f~~~~  364 (365)
T COG1932         301 MNVTFTLVDAE-----LDKGFVAEA-EAAGLIYLKGH--RSVGGLRASIYNAVPLEDVEALTDFMDWFEETY  364 (365)
T ss_pred             eeEEEEcCcHH-----HHHHHHHHH-HHcCCceeccc--cCCCceeeeeecCCCHHHHHHHHHHHHHHHHhh
Confidence            34444554321     123455544 66788877772  23456999994  57899999999888877654

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=98.91  E-value=1.6e-07  Score=84.20  Aligned_cols=288  Identities=14%  Similarity=0.123  Sum_probs=143.3

Q ss_pred             CCEEEcCChH-HHHHHHHHhhc--CCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCC-ccCChhhHHHhhcc--
Q 038416           74 EDVYLTLGCS-QAIEISLSVLA--RPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKR-WEVDLDGVEALADE--  147 (387)
Q Consensus        74 ~~i~~~~g~~-~a~~~~~~~l~--~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~l~~~~~~--  147 (387)
                      ...++++-+| ..+.+.+.++.  ..++.|+.+.-.+.+....+.  ..|++++.++...+.+ ...|.+.+++.+++  
T Consensus        75 ~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~--~AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~G  152 (389)
T PF05889_consen   75 KSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIE--RAGLEPVVVENVLEGDELITDLEAIEAKIEELG  152 (389)
T ss_dssp             CEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHH--HTT-EEEEE-EEEETTEEEEHHHHHHHHHHHHC
T ss_pred             cceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHH--hcCCeEEEeeccCCCCeeeccHHHHHHHHHHhC
Confidence            3455554433 33444444453  456899999888888888888  8999999988543333 34467777777643  


Q ss_pred             -CceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCC-CCCccccccCCCccEEEEecCccccccc
Q 038416          148 -NTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS-TPYVPMGVFGSIVPVITLGSISKRWIVP  225 (387)
Q Consensus       148 -~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~s~sK~~~~~  225 (387)
                       ...+.+++.++---+..  ++++++|+++|++||++.|+..+|+.=...- +..........  -.+++.|.-|.|..|
T Consensus       153 ~~~iLcvltttscfapr~--~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~GR--vda~vqS~dkNF~VP  228 (389)
T PF05889_consen  153 ADNILCVLTTTSCFAPRL--PDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVGR--VDAFVQSTDKNFMVP  228 (389)
T ss_dssp             GGGEEEEEEESSTTTTB------HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHST--CSEEEEEHHHHHCEE
T ss_pred             CCCeEEEEEecCccCCCC--CccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcCC--cceeeeecCCCEEec
Confidence             45666777664333333  1459999999999999999999998400000 00000000000  016788999998644


Q ss_pred             ccceEEEEeeCCCCcccchhHHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhh----cC
Q 038416          226 GWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIK----EI  301 (387)
Q Consensus       226 g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~  301 (387)
                       ..-+.|.+.+       |.++..+.+.+..-... .+.......++.-+. ..+............++.+.|+    +.
T Consensus       229 -vGgai~As~~-------~~~i~~vs~~YpGRas~-sp~ld~~itLl~LG~-~g~~~ll~~r~~~f~~l~erl~~~aee~  298 (389)
T PF05889_consen  229 -VGGAIMASFD-------PSGILAVSKEYPGRASA-SPSLDLFITLLSLGC-TGYGALLKERKASFPYLKERLKKWAEEV  298 (389)
T ss_dssp             -SSHEEEEESS-------HHHHHHHHHTSHSHBTS-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -CCCcEEEecC-------HHHHHHHHHHhhhhhhc-ccchHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             2224444433       56888777765311112 222333333333222 1222222222222222222222    22


Q ss_pred             CCCCCCCCCCceEEEEEecCcccccCC--CcHHHHHHHHHHhcCeE----EEcCCcc-------CCCCeEEEEe--eCCh
Q 038416          302 PCITCPVKPQGAMFVMVKLNVSMLEDI--GDDLEFCLKLAKEESVI----ILPGRTV-------GMKNWLRIAF--AAEP  366 (387)
Q Consensus       302 ~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~ll~~~gi~----v~~g~~~-------~~~~~~Ri~~--~~~~  366 (387)
                       +-.+...|..-..+.+.++.  +...  .+...+..+ |..+||.    +.++...       ....++-++.  +.++
T Consensus       299 -~e~ll~~p~N~is~a~tl~~--l~~~~~k~~~~lgs~-Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~AsaiG~~~  374 (389)
T PF05889_consen  299 -GERLLETPRNHISMAFTLDT--LYEISQKDGTFLGSM-LFKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTAASAIGMTR  374 (389)
T ss_dssp             -TEEBSSSTT-SSEEEEE-TT--CCTCCSSHHHHHHHH-HHHTTEESSEEEETSSCEEETTSS--SSSEEEEEE-TT--H
T ss_pred             -hhhhcCCCCCCeeEEEECcc--chhhccchhhhHHHH-HHhCCcccceeeccCCCcccccCCCCchHHHHHHHHhCCCH
Confidence             11112234333333444442  1111  123344444 4666764    2232211       1136777744  6799


Q ss_pred             HhHHHHHHHHHHHHH
Q 038416          367 ATLEDGLERIKAFCQ  381 (387)
Q Consensus       367 e~~~~~~~~l~~~~~  381 (387)
                      ||++..+++|+++++
T Consensus       375 eevd~~v~rL~k~i~  389 (389)
T PF05889_consen  375 EEVDYFVKRLDKIIK  389 (389)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC
Confidence            999999999999875

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=98.90  E-value=1e-07  Score=84.77  Aligned_cols=320  Identities=12%  Similarity=0.079  Sum_probs=175.3

Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc-------CCC-----CeEE-EcCCCCcc
Q 038416           43 YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA-------RPG-----ANIL-IPRPGYPL  109 (387)
Q Consensus        43 ~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-------~~g-----~~vl-~~~p~~~~  109 (387)
                      ..-|...++....++.+-+...+..|+....|.|+.-.|+..-+.++..+--       ..|     +-|+ +.+-+|++
T Consensus       130 ~~TYEiAPvF~lmE~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYS  209 (510)
T KOG0629|consen  130 MFTYEIAPVFVLMEEEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYS  209 (510)
T ss_pred             CceEEecceEEeehHHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhh
Confidence            3355554554455555555555555655554555554444444444333311       122     2333 46789999


Q ss_pred             hHHHhhccCCCce---eeeeccCCCCCccCChhhHHHhhccC--ceEE-EEeCC---CCCccccCCHHHHHHHHHHHHhc
Q 038416          110 YEIHAAGSNNNLE---ARHYDLLPEKRWEVDLDGVEALADEN--TVAI-VIINP---GNPCGNVFSYQHLQKIARTARNL  180 (387)
Q Consensus       110 ~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~v-~l~~p---~nptG~~~~~~~~~~l~~~~~~~  180 (387)
                      +...++  .+|+.   ++.++.+  ...++++++||+.+-..  ...+ ++.+.   +.--|..   +++..++++|++|
T Consensus       210 i~kaAa--~lg~gtd~c~~v~t~--e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAF---DdL~~iadiC~k~  282 (510)
T KOG0629|consen  210 IKKAAA--FLGLGTDHCIKVKTD--ERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAF---DDLNGIADICEKH  282 (510)
T ss_pred             HHHHHH--HhccCCceeEEeccc--ccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeecc---CcHHHHHHHHHhc
Confidence            999999  88854   5555654  33489999999976431  1111 22333   4455655   6699999999999


Q ss_pred             CcEEeecccccccc-cCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhh------
Q 038416          181 GIIVIADEVYNHLA-FGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGC------  253 (387)
Q Consensus       181 ~~~li~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~------  253 (387)
                      ++|+++|.++++.. .+.....-+......+  -+..+.+|.. ...++++..+.+..+       +..+-.+.      
T Consensus       283 ~lWmHvDAAwGGglLmS~k~R~kl~Giera~--SvtwnpHK~~-gaplqCsa~l~r~~g-------ll~~Cn~~~A~YLF  352 (510)
T KOG0629|consen  283 KLWMHVDAAWGGGLLMSRKHRHKLTGIERAN--SVTWNPHKLM-GAPLQCSAFLTREEG-------LLQRCNQMSAIYLF  352 (510)
T ss_pred             CEEEEeecccccccccChhhHhhccCccccC--ceeecHHHhh-cCcchhhHHHHHHHH-------HHHhhcccchhhhh
Confidence            99999999998622 2211111122222211  3345889995 445788888776522       11111110      


Q ss_pred             -----hhccC-CcchHHHH-----HHHH--HhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC--CCceEEEEE
Q 038416          254 -----LNAAS-HPVTFIQA-----AVPR--IVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVK--PQGAMFVMV  318 (387)
Q Consensus       254 -----~~~~~-~~~~~~~~-----~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~g~~~~~  318 (387)
                           +..+. +..-..|-     +..-  +++......+++.++++-++++++.+.|++-++...+..  |+..++.+-
T Consensus       353 q~dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw  432 (510)
T KOG0629|consen  353 QQDKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEPEHVNVCFW  432 (510)
T ss_pred             ccCceeecccccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCCceEEEeec
Confidence                 00000 11111110     1111  122233567889999999999999999999877555544  454444443


Q ss_pred             ecCcccccCCCcHH-----------HHHHHHHHhcCeEEEcCCccC-CCCeEEEEee---CChHhHHHHHHHHHHHHH
Q 038416          319 KLNVSMLEDIGDDL-----------EFCLKLAKEESVIILPGRTVG-MKNWLRIAFA---AEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       319 ~~~~~~~~~~~~~~-----------~~~~~ll~~~gi~v~~g~~~~-~~~~~Ri~~~---~~~e~~~~~~~~l~~~~~  381 (387)
                      ..|.. +.+.....           .+-.+++++ |-.-......+ .++.||+.++   .+.++++-+++.|..+-+
T Consensus       433 ~vp~~-lR~~~~~~e~~~rL~kVaPkIK~~Mm~~-Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerlgq  508 (510)
T KOG0629|consen  433 YVPPS-LRGWQENPERDSRLVKVAPKIKERMMKK-GTTMIGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERLGQ  508 (510)
T ss_pred             cCchH-hccCcccchhhhHHHhhCcHHHHHHHhc-cceeeEecccccccchhheecccchhhhhhHHHHHHHHHHhcc
Confidence            33331 22222211           223334343 54433322222 2578999994   367899999998876543

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=98.86  E-value=1.5e-06  Score=75.71  Aligned_cols=213  Identities=14%  Similarity=0.091  Sum_probs=116.2

Q ss_pred             hhHHHhhcc-----CceEEEEeCC-CCCccc-cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCCc
Q 038416          139 DGVEALADE-----NTVAIVIINP-GNPCGN-VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIV  210 (387)
Q Consensus       139 ~~l~~~~~~-----~~~~v~l~~p-~nptG~-~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~  210 (387)
                      +++|+.+..     ++++.+++.| ++..|. -.|++..+.|.++|++|++.+|+||++.+.+-.|.-+.. ...++.. 
T Consensus       256 ~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~P-  334 (484)
T KOG1405|consen  256 AEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSP-  334 (484)
T ss_pred             HHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCC-
Confidence            455555532     4667777888 666776 589999999999999999999999999986655542221 2223332 


Q ss_pred             cEEEEecCcccccccccceEEEEeeCCCCcccchhHHH-HHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHH
Q 038416          211 PVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD-SIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKE  289 (387)
Q Consensus       211 ~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  289 (387)
                        .-+-+|||-|-.+    ||..-.         +++- ...+..+ ++-..|.-...+.++++...++-+-..   .+.
T Consensus       335 --pD~vTFSKK~q~g----Gffh~~---------~frpn~pYrifN-TWmGdP~k~lll~~vv~~I~~~~Ll~n---~~~  395 (484)
T KOG1405|consen  335 --PDVVTFSKKFQTG----GFFHDE---------EFRPNEPYRIFN-TWMGDPSKNLLLEEVVQEIKREDLLNN---VAH  395 (484)
T ss_pred             --ccceehhhhhhcC----ccccCc---------ccCCCchHHHhh-hhcCChHHHHHHHHHHHHHhHHHHHHH---HHH
Confidence              2344799997544    443321         1111 0111222 222333333334444443222323222   222


Q ss_pred             HHHHHHHHhh----cCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeC-
Q 038416          290 TADICYERIK----EIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAA-  364 (387)
Q Consensus       290 ~~~~~~~~l~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~-  364 (387)
                      .-+.+...|.    +.|+.-.. ...-|-|+..+++..      ...+.+...++..|+.+...+    ...+|+.++. 
T Consensus       396 vG~~l~~gL~~Lq~~~p~~~~~-~RGrGTF~a~d~ps~------~~Rdk~i~~~~~nGv~~GGCg----~~siRfRPsLv  464 (484)
T KOG1405|consen  396 VGKALLKGLLELQAKYPGKINN-LRGRGTFIAWDCPSG------SIRDKLILIARLNGVNLGGCG----DKSIRFRPSLV  464 (484)
T ss_pred             HHHHHHHHHHHHHHhCchhhhc-ccccceEEEEeCCCh------HHHHHHHHHHHHcCceecccc----cceeeecccee
Confidence            2333333333    35553312 333455766677753      223334445577798775542    4567777753 


Q ss_pred             -ChHhHHHHHHHHHHHHHH
Q 038416          365 -EPATLEDGLERIKAFCQR  382 (387)
Q Consensus       365 -~~e~~~~~~~~l~~~~~~  382 (387)
                       .+.-.+-.++++.+.+..
T Consensus       465 f~~~Ha~i~l~~~~k~l~~  483 (484)
T KOG1405|consen  465 FRKHHADIFLDIFDKILAG  483 (484)
T ss_pred             ehhhhHHHHHHHHHHHhcc
Confidence             566666677777776654

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=98.79  E-value=2.6e-07  Score=78.53  Aligned_cols=172  Identities=19%  Similarity=0.235  Sum_probs=108.6

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCC-CCcchHHHhh------cc--CCC
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRP-GYPLYEIHAA------GS--NNN  120 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p-~~~~~~~~~~------~~--~~g  120 (387)
                      .|...|.+.-|+-+    +.....-+..+.+ +|+|+.+++..+++|||..+...- -|....+..-      .|  ..|
T Consensus        65 ~GRdtLe~vyA~vf----~aE~a~VRpq~is-GTHAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~gSL~dfg  139 (416)
T COG4100          65 LGRDTLERVYAQVF----GAEAALVRPQIIS-GTHAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQGSLKDFG  139 (416)
T ss_pred             cchhHHHHHHHHHh----ccccceeeeeeec-chhHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCcccHHHhC
Confidence            35455555555554    3222222444555 689999999999999999876433 3332233222      11  344


Q ss_pred             ceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCC-CccccCCHHHHHHHHHHHHhc--CcEEeecccccccccCC
Q 038416          121 LEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGN-PCGNVFSYQHLQKIARTARNL--GIIVIADEVYNHLAFGS  197 (387)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~n-ptG~~~~~~~~~~l~~~~~~~--~~~li~D~~~~~~~~~~  197 (387)
                      +....+|+.  .+.++|.+.+..+++++||+|.+..... ..--.++.++++++++..++.  |+++++|.+|++|.-..
T Consensus       140 i~Y~~v~Lt--~~gkiD~~~v~~~i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~  217 (416)
T COG4100         140 IKYKAVPLT--ADGKIDIQAVKTAISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEK  217 (416)
T ss_pred             cceeecccc--cCCcccHHHHHHhcCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhcc
Confidence            555556664  3448999999999999999998876521 111237889999999998865  68999999999987432


Q ss_pred             CCCccccccCCCccEEEEecCccccccccc--ceEEEEeeC
Q 038416          198 TPYVPMGVFGSIVPVITLGSISKRWIVPGW--RLGWLVTSD  236 (387)
Q Consensus       198 ~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~--r~G~i~~~~  236 (387)
                       .+..+   ..   .+..+|+-|. ...|+  --||+.+..
T Consensus       218 -EPt~v---Ga---DliAGSLIKN-pGGgiaktGGYiaGk~  250 (416)
T COG4100         218 -EPTHV---GA---DLIAGSLIKN-PGGGIAKTGGYIAGKA  250 (416)
T ss_pred             -Ccccc---ch---hhhccceeeC-CCCceeeccceeechH
Confidence             22222   11   2566788887 22221  247777654

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=98.76  E-value=4.8e-05  Score=68.46  Aligned_cols=287  Identities=17%  Similarity=0.138  Sum_probs=160.2

Q ss_pred             HHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc---CCCCeEEEcCCCCcchHHHhhcc--CCCceeeeeccCC
Q 038416           56 RRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA---RPGANILIPRPGYPLYEIHAAGS--NNNLEARHYDLLP  130 (387)
Q Consensus        56 r~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~---~~g~~vl~~~p~~~~~~~~~~~~--~~g~~~~~~~~~~  130 (387)
                      ...++++.      +.+-.+.-+-.++|.+-++++.+..   ++.++++++..+|+.+...++-.  -.|.++..++.+ 
T Consensus       126 Qtlv~dLT------Gm~VANASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-  198 (450)
T COG0403         126 QTLVADLT------GLDVANASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-  198 (450)
T ss_pred             HHHHHHHh------CCCcccchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-
Confidence            44555555      3444555566677766666666653   33589999999999887777611  234455544432 


Q ss_pred             CCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEee--cccccccccCCCCCccccccCC
Q 038416          131 EKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIA--DEVYNHLAFGSTPYVPMGVFGS  208 (387)
Q Consensus       131 ~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~--D~~~~~~~~~~~~~~~~~~~~~  208 (387)
                            |.+.+++..+.++.++++..|+. .|..  ..+++++++.+++++.++++  |-..-.+      ..+-..+..
T Consensus       199 ------d~~~l~~~~~~~~~gv~vQyP~~-~G~~--~~d~~~l~~~~h~~~al~~v~aDplaL~L------L~pPGe~GA  263 (450)
T COG0403         199 ------DLDDLESADDGDVFGVLVQYPNT-FGIV--EEDLRALIEAAHSAGALVIVAADPLALGL------LKPPGEFGA  263 (450)
T ss_pred             ------hhhhhhhccccCeEEEEEecCCC-CCcc--chhHHHHHHHHhhcCCEEEEEechhHhhc------cCCccccCC
Confidence                  67777877334778899999985 5632  26699999999999987764  2222111      112223333


Q ss_pred             CccEEEEecCccc---ccccccceEEEEeeCCC-------------CcccchhHHHH-------HHhhhhcc-CCcchHH
Q 038416          209 IVPVITLGSISKR---WIVPGWRLGWLVTSDPN-------------GILQNSGFVDS-------IKGCLNAA-SHPVTFI  264 (387)
Q Consensus       209 ~~~~~~i~s~sK~---~~~~g~r~G~i~~~~~~-------------~~~~~~~~~~~-------~~~~~~~~-~~~~~~~  264 (387)
                      |   |++++....   ++.+|..+||..+.+.-             +..+++.+.-.       +|+.+.++ -+.+...
T Consensus       264 D---IvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaL  340 (450)
T COG0403         264 D---IVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQAL  340 (450)
T ss_pred             c---eEEecCcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHH
Confidence            3   777776654   23456778887765411             11111211111       11111111 1111111


Q ss_pred             HH-HHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhc
Q 038416          265 QA-AVPRIVDETNEAFFAKIIGLLKETADICYERIKEIP-CITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEE  342 (387)
Q Consensus       265 ~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  342 (387)
                      .+ ++...+.-+..+.+.++.++..+...++.+.|++.. +++.+ ....-.-+.++++.      .....++.+ ....
T Consensus       341 lA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~-~~~fFdt~~v~~~~------~~~~~l~~~-~~~~  412 (450)
T COG0403         341 LALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELV-FDHFFDTFTVRVPE------EVAEALLAA-AIAG  412 (450)
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEec-cccceeeEEEecch------hHHHHHHHH-HHhc
Confidence            11 111122224568899999999999999999999653 46633 22222223334431      012222232 3445


Q ss_pred             CeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHH
Q 038416          343 SVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAF  379 (387)
Q Consensus       343 gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~  379 (387)
                      |+.+..-.    ...+-+++  .+++++++.+++.+...
T Consensus       413 G~~L~~~~----~~~~~ia~tEt~t~~~i~~l~~~~~~~  447 (450)
T COG0403         413 GINLRRVD----ADTVLIALTETTTKEDIDALVAAFGGV  447 (450)
T ss_pred             CCceeeec----CCceEEEeecccCHHHHHHHHHHHhhh
Confidence            77665422    34566666  35789999999887654

>PRK12566 glycine dehydrogenase; Provisional

Probab=98.40  E-value=0.00023  Score=71.64  Aligned_cols=269  Identities=13%  Similarity=0.123  Sum_probs=143.3

Q ss_pred             CCCCCEEEcCChHHHHHHHHHhh---cCCCCeEEEcCCCCcchHHHhh--ccCCCceeeeeccCCCCCccCChhhHHHhh
Q 038416           71 LSPEDVYLTLGCSQAIEISLSVL---ARPGANILIPRPGYPLYEIHAA--GSNNNLEARHYDLLPEKRWEVDLDGVEALA  145 (387)
Q Consensus        71 ~~~~~i~~~~g~~~a~~~~~~~l---~~~g~~vl~~~p~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~  145 (387)
                      .+-.+.-+-.++|.+-++++.+.   ..+..+|+++...|+.+...++  ....|++++.             +++++.+
T Consensus       139 m~vaNASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~-------------~~~~~~~  205 (954)
T PRK12566        139 LDLANASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV-------------DAVDNLA  205 (954)
T ss_pred             chhhhhhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE-------------cchhhcC
Confidence            33344445555555444433333   2224689999999988776555  0034444442             3334445


Q ss_pred             ccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEec---Ccccc
Q 038416          146 DENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGS---ISKRW  222 (387)
Q Consensus       146 ~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s---~sK~~  222 (387)
                      +.++.+|++.+|+. .|.+   ++++++++++++.|.++|+ .+.- +...  ...+-..+..|   |++++   |.=-+
T Consensus       206 ~~~~~~v~vq~P~~-~G~i---~d~~~i~~~~h~~gal~~~-~~d~-laL~--ll~~Pge~GAD---I~vG~~Q~fGvp~  274 (954)
T PRK12566        206 AHAVFGALLQYPDT-HGEI---RDLRPLIDQLHGQQALACV-AADL-LSLL--VLTPPGELGAD---VVLGSTQRFGVPM  274 (954)
T ss_pred             CCCEEEEEEECCCC-ceEE---ccHHHHHHHHHHcCCEEEE-EeCH-HHHh--CCCChhhcCCc---EEeeCCCcCCCCC
Confidence            55788888999985 7887   5699999999999987653 2211 1111  11112233333   55653   22333


Q ss_pred             cccccceEEEEeeCCC-------------CcccchhHH-------HHHHhhhhcc-CCcchHHHHHHHHH-hhhccHHHH
Q 038416          223 IVPGWRLGWLVTSDPN-------------GILQNSGFV-------DSIKGCLNAA-SHPVTFIQAAVPRI-VDETNEAFF  280 (387)
Q Consensus       223 ~~~g~r~G~i~~~~~~-------------~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~-l~~~~~~~~  280 (387)
                      +.+|.-.|++.+++.-             +..+++.+.       ..+++.+.++ -+.+....+.++.+ +.-+..+.+
T Consensus       275 ~~GGP~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~Gl  354 (954)
T PRK12566        275 GYGGPHAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVYHGPEGL  354 (954)
T ss_pred             CCCCCCeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhChHHH
Confidence            4456667888775410             000001010       0111111111 11111112222221 122346778


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEE
Q 038416          281 AKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRI  360 (387)
Q Consensus       281 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri  360 (387)
                      +++.++...++.++.+.|.+. |++....   .+|--+.+...     ....++... +.+.||-++--.    .+.+.|
T Consensus       355 ~~ia~~~~~~a~~l~~~l~~~-g~~~~~~---~fF~~~~v~~~-----~~~~~~~~~-a~~~~~n~r~~~----~~~~~~  420 (954)
T PRK12566        355 KRIAQRVHRLTAILAAGLEAK-GIKRLNR---HFFDTLTLEVG-----GAQAAIIES-AEAARINLRILG----RGRLGV  420 (954)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-CCccccC---CccceEEEEcc-----CCHHHHHHH-HHHCCCeeEEeC----CCeEEE
Confidence            999999999999999999884 7774422   33322222210     023344444 455688776532    456788


Q ss_pred             Ee--eCChHhHHHHHHHHH
Q 038416          361 AF--AAEPATLEDGLERIK  377 (387)
Q Consensus       361 ~~--~~~~e~~~~~~~~l~  377 (387)
                      |+  .++.+++..++..+.
T Consensus       421 s~de~~~~~~~~~~~~~f~  439 (954)
T PRK12566        421 SLDETCDEATVARLFDIFL  439 (954)
T ss_pred             EeCCCCCHHHHHHHHHHhc
Confidence            88  467899999988883

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=97.93  E-value=0.0074  Score=52.27  Aligned_cols=305  Identities=10%  Similarity=0.008  Sum_probs=161.8

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCC---CeEEEcCCCCcc----hHHHhhccCCCce
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPG---ANILIPRPGYPL----YEIHAAGSNNNLE  122 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g---~~vl~~~p~~~~----~~~~~~~~~~g~~  122 (387)
                      .+.+..-..++..+      +...++|.++++-|.-+..++.++.+|-   -+|+++.-.|++    +....+  .-|..
T Consensus       111 ~~De~il~l~~~iV------GA~e~EvavmNsLTvNlh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~--lhG~~  182 (465)
T KOG3846|consen  111 SIDEPILPLLAPIV------GAQENEVAVMNSLTVNLHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCK--LHGIS  182 (465)
T ss_pred             ecchhhhhhhhhhc------cCCchhhhhHhhhhhHHHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhh--hcCCC
Confidence            34455556666666      4577899999999988998888887653   468877666653    455555  56655


Q ss_pred             eeee--ccCC-CCCccCChhhHHHhhccCc---eEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccC
Q 038416          123 ARHY--DLLP-EKRWEVDLDGVEALADENT---VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFG  196 (387)
Q Consensus       123 ~~~~--~~~~-~~~~~~~~~~l~~~~~~~~---~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~  196 (387)
                      +...  -+.+ +....+..+++.+.++.+.   .+|+++..+.-||+.++   +.+|-..-...|.++=.|-+|+.    
T Consensus       183 ~e~sm~~iePREGEetlRteDILd~IEkngDeiA~v~fSGvqyYTGQ~Fd---i~aIT~Agq~kgc~VGfDLAHAv----  255 (465)
T KOG3846|consen  183 PENSMIQIEPREGEETLRTEDILDTIEKNGDEIALVCFSGVQYYTGQYFD---IGAITFAGQFKGCLVGFDLAHAV----  255 (465)
T ss_pred             hHHheEEecccccccchhHHHHHHHHHhcCCeEEEEEeecceeecccccc---hhhhhhcccCCCcEechhhhhhh----
Confidence            4322  1222 2334556777888776653   33455566889999988   66666655667889989988884    


Q ss_pred             CCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhh----------h-----c---cC
Q 038416          197 STPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL----------N-----A---AS  258 (387)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~----------~-----~---~~  258 (387)
                      |.-+..+   ..++-.+.++.--|....+.-.+|-+..-....--..|.+..++....          .     .   -+
T Consensus       256 gNVpL~L---HdWgVDFACWCSYKYlnaGaGgIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiS  332 (465)
T KOG3846|consen  256 GNVPLQL---HDWGVDFACWCSYKYLNAGAGGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRIS  332 (465)
T ss_pred             cCCceEE---eecCCceEEEeeecccccCCCccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccC
Confidence            2212222   222223555544465322112234443322111111123333332110          0     0   11


Q ss_pred             CcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCC-----------CCCCCCCC----CceEEEEEecCcc
Q 038416          259 HPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIP-----------CITCPVKP----QGAMFVMVKLNVS  323 (387)
Q Consensus       259 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~~~~~~~~----~~g~~~~~~~~~~  323 (387)
                      +|+.....++..-|+-..+-.++..+++--....++...++...           -+++. .|    +.|.-+.+.|+. 
T Consensus       333 NPpi~~v~al~~SLe~F~q~~~~~lRkrS~lLTgYleyL~k~~~g~~~~~rt~Kl~~~Ii-TP~~~~erGcQLsl~Fss-  410 (465)
T KOG3846|consen  333 NPPIIDVVALRSSLELFAQFNINELRKRSLLLTGYLEYLLKASKGYKHPLRTEKLFFTII-TPTSTDERGCQLSLYFSS-  410 (465)
T ss_pred             CCcHhHHHHHHhhHHHHHHhhHHHHhhhhhhHHhHHHHHHHHhcccCchhhhcceeEEEe-CCcccccccceEEEEeCC-
Confidence            23333334444444432222233333222222222222222111           12211 22    235555555653 


Q ss_pred             cccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee---CChHhHHHHHHHHHHHHHHhhh
Q 038416          324 MLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA---AEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       324 ~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~---~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                            +.....++| .++|+..-.-    .++.+|+.+.   .+-.|+-..++.|.+++..+..
T Consensus       411 ------p~~~vfqeL-~krGv~~DkR----~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d~~es  464 (465)
T KOG3846|consen  411 ------PTPKVFQEL-HKRGVIGDKR----RPNVIRVAPVPLYNTFSDVYIFVNALNEAMDKLES  464 (465)
T ss_pred             ------CchHHHHHH-HHcCeecccc----CCCceEeecchhhccHHHHHHHHHHHHHHHHHhhc
Confidence                  233455555 7779875432    3688999983   4678999999999888877653

>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]

Probab=97.79  E-value=0.0032  Score=53.80  Aligned_cols=330  Identities=15%  Similarity=0.095  Sum_probs=175.8

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCC--------CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEc
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAH--------YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLT   79 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~--------~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~   79 (387)
                      +.++++.+|..      -+|+.|+..+++-+-+-.        .++.+  .....+-+.....+++.++++-..+-+++.
T Consensus         6 ~~vvnFaaGPA------klp~~VL~e~qkdl~n~~g~GisV~EmSHRs--k~f~kii~~tes~lreLlniPdn~~vlf~Q   77 (370)
T KOG2790|consen    6 ERVVNFAAGPA------KLPESVLLEAQKDLLNFNGSGISVMEMSHRS--KDFAKIINDTESLLRELLNIPDNYKVLFLQ   77 (370)
T ss_pred             cceeecCCCcc------cCCHHHHHHHHHHhhccCCCcceEEEecccc--hhHHHHHHHHHHHHHHHHcCCCceeEEEEe
Confidence            44556666532      456666666666554311        11222  233344444444555555555444455667


Q ss_pred             CChHHHHHHHHHhhc--CCC---CeEEEcCCCCcchHHHhhccCCCce-eeeeccCCCC-CccCChhhHHHhhccCceEE
Q 038416           80 LGCSQAIEISLSVLA--RPG---ANILIPRPGYPLYEIHAAGSNNNLE-ARHYDLLPEK-RWEVDLDGVEALADENTVAI  152 (387)
Q Consensus        80 ~g~~~a~~~~~~~l~--~~g---~~vl~~~p~~~~~~~~~~~~~~g~~-~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~v  152 (387)
                      .|+|+-+.++...|+  +.|   |-|++-...--.+.+.-+   +|.. .+..++.... +.-+|.+.++  .+++.+.|
T Consensus        78 GGGt~qFaAv~lNL~glK~g~~AdYiVTGsWS~KA~~EAkk---~~~~~~V~~~~k~y~ygkvPd~~~w~--~~~da~yv  152 (370)
T KOG2790|consen   78 GGGTGQFAAVPLNLIGLKHGRCADYVVTGSWSAKAAEEAKK---YGTPNIVIPKLKSYTYGKVPDPSTWE--LNPDASYV  152 (370)
T ss_pred             CCCcccccccchhhhccccCCccceEEeccccHHHHHHHHh---hCCceEEeccccccccCcCCChhhcc--cCCCccEE
Confidence            777887887777776  444   455554444444444444   4433 2333322111 1223444433  34556678


Q ss_pred             EEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEE
Q 038416          153 VIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWL  232 (387)
Q Consensus       153 ~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i  232 (387)
                      .+|.-..-.|+-++.-.      +-..++..+|.|-+...+.    .+..+..+     -++.....|.+|++|.  -.+
T Consensus       153 yyCaNETVHGVEf~~~P------~~~~~~~vlVaDmSSnflS----rpvDvsk~-----gvi~aGAQKN~G~aG~--Tvv  215 (370)
T KOG2790|consen  153 YYCANETVHGVEFDFIP------VNDPKGAVLVADMSSNFLS----RPVDVSKF-----GVIFAGAQKNVGPAGV--TVV  215 (370)
T ss_pred             EEecCceeeceecCCCC------CCCCCCceEEEecccchhc----CCccchhc-----ceEEeccccccCcccc--EEE
Confidence            88876666677554211      1225578888887665422    12222222     2556678899898884  555


Q ss_pred             EeeCCCCcccchhHHHHHHhh-------------hhccCCcchHHHHHHHHHhhhcc-HHHHHHHHHHHHHHHHHHHHHh
Q 038416          233 VTSDPNGILQNSGFVDSIKGC-------------LNAASHPVTFIQAAVPRIVDETN-EAFFAKIIGLLKETADICYERI  298 (387)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l  298 (387)
                      +.++        +++......             .....+++.++.+++...++... ...+..+.+.-.+.++.+.+.+
T Consensus       216 ivr~--------dllg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd~i  287 (370)
T KOG2790|consen  216 IVRK--------DLLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYDAI  287 (370)
T ss_pred             EEeh--------hhhcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            5555        233222211             11223455556555554444322 3556666666777788888998


Q ss_pred             hcCCCCC-CCCCCC--ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHH
Q 038416          299 KEIPCIT-CPVKPQ--GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGL  373 (387)
Q Consensus       299 ~~~~~~~-~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~  373 (387)
                      .+..|+. ++..|.  +-+-+.+++.+..     -..+|+.+.+++ +..-.-|..  .-+.+|-|+  +.+-++.++++
T Consensus       288 D~s~gfy~cpVe~~~RS~MNV~Fri~~d~-----Le~eFLkeA~~~-~mv~LKGhR--SVGGiRASlYNAisv~~~q~L~  359 (370)
T KOG2790|consen  288 DNSNGFYRCPVEPSVRSRMNVPFRIEKDE-----LEAEFLKEAAKE-HMVQLKGHR--SVGGIRASLYNAISVEEVQKLA  359 (370)
T ss_pred             HhcCCeEEcccchhhhhhcccceeecchH-----HHHHHHHHHHHh-hhhcccccc--ccccchhhhhccccHHHHHHHH
Confidence            8754433 222332  2333344454321     134666665444 444333321  246799999  56889999988


Q ss_pred             HHHHHHHHHh
Q 038416          374 ERIKAFCQRH  383 (387)
Q Consensus       374 ~~l~~~~~~~  383 (387)
                      +-+++..+.+
T Consensus       360 ~~m~~F~k~h  369 (370)
T KOG2790|consen  360 AFMKEFQKKH  369 (370)
T ss_pred             HHHHHHHHhc
Confidence            8888877654

>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]

Probab=97.39  E-value=0.0013  Score=55.56  Aligned_cols=157  Identities=18%  Similarity=0.182  Sum_probs=84.5

Q ss_pred             HHHHHHhhc--CCC-CeEEEcCCCCcchHHHhhccCCCceeeeeccCCCC-CccCChhhHHHhhcc-CceEEEEeCCCCC
Q 038416           86 IEISLSVLA--RPG-ANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEK-RWEVDLDGVEALADE-NTVAIVIINPGNP  160 (387)
Q Consensus        86 ~~~~~~~l~--~~g-~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~~~~v~l~~p~np  160 (387)
                      +...+.++.  +|. .-|+...-.--+......  ..|.+++.+.-..+. ....|++.+++.+.. +...++..+....
T Consensus        89 lslc~~s~r~krpkakyiiw~ridqks~~ksi~--~agfepiiie~i~d~d~l~tdleav~~~iee~g~dcilci~stts  166 (432)
T KOG3843|consen   89 LSLCFLSLRHKRPKAKYIIWLRIDQKSCFKSII--HAGFEPIIIENILDGDELITDLEAVEAIIEELGEDCILCIHSTTS  166 (432)
T ss_pred             HHHHHHHHhhcCCcccEEEEEecchHHHHHHHH--hcCCCceeeeccccchHHHHhHHHHHHHHHHhCCceEEEEeeccc
Confidence            444444553  344 344444433334444445  688887776543332 233478888877754 3444433333332


Q ss_pred             ccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccc-cCCCccEEEEecCcccccccccceEEEEeeCCCC
Q 038416          161 CGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV-FGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNG  239 (387)
Q Consensus       161 tG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~  239 (387)
                      .=..-+++.+++|+.+|..|+++-|+..+|+.-.-.  -..-+.. -....-..++.|+-|.|..|-  .|.+++.=   
T Consensus       167 cfapr~pd~leaiaaica~~diphivnnayglqsee--~i~~iaa~~~~grida~vqsldknf~vpv--ggaiia~f---  239 (432)
T KOG3843|consen  167 CFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEE--CIHKIAAAAECGRIDAFVQSLDKNFMVPV--GGAIIAAF---  239 (432)
T ss_pred             ccCCCCCchHHHHHHHHHccCchhhhccccccchHH--HHHHHHHHhhhccHHHHHHHhhhcceeec--chhHhhHh---
Confidence            333345688999999999999999999999842110  0000000 001011245678999987652  23344321   


Q ss_pred             cccchhHHHHHHhhh
Q 038416          240 ILQNSGFVDSIKGCL  254 (387)
Q Consensus       240 ~~~~~~~~~~~~~~~  254 (387)
                         +..++..+.+.+
T Consensus       240 ---k~n~iq~iak~y  251 (432)
T KOG3843|consen  240 ---KDNFIQEIAKMY  251 (432)
T ss_pred             ---HHHHHHHHHHhC
Confidence               124666665554

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=97.25  E-value=0.21  Score=48.13  Aligned_cols=310  Identities=14%  Similarity=0.064  Sum_probs=162.8

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCC-hHHHH---HHHHHhh-cCCCC---e-EEEcCCCCcchHHHhhccCCC
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLG-CSQAI---EISLSVL-ARPGA---N-ILIPRPGYPLYEIHAAGSNNN  120 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g-~~~a~---~~~~~~l-~~~g~---~-vl~~~p~~~~~~~~~~~~~~g  120 (387)
                      +|+.++-..+.+++-..    +.-|.+-+.++ +.++-   ..++++. ..+|+   + -++|...|......+.  ..|
T Consensus       578 qGY~~lf~~Le~~Lc~i----TG~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPASA~--Mag  651 (1001)
T KOG2040|consen  578 QGYQQLFTELEKDLCEI----TGFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPASAA--MAG  651 (1001)
T ss_pred             hhHHHHHHHHHHHhhee----ecccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChhhHH--hcC
Confidence            57777777777776442    23466666533 22222   2233333 33442   3 3567778876667777  899


Q ss_pred             ceeeeeccCCCCCccCChhhHHHhhccC---ceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCC
Q 038416          121 LEARHYDLLPEKRWEVDLDGVEALADEN---TVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS  197 (387)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~  197 (387)
                      ++++.+..+  .+..+|..+|.+..+++   -.++.++-|+. -|+.  .+.++++.++.++||-.|..|.+-.....+-
T Consensus       652 mkvvpV~~~--~~G~id~~dLk~kaekh~~~Laa~MvTYPST-~Gvf--E~~i~d~cd~iHehGGQVYlDGANMNAqVGl  726 (1001)
T KOG2040|consen  652 MKVVPVGCD--ANGNIDMVDLKAKAEKHKDNLAALMVTYPST-HGVF--EEGIDDICDIIHEHGGQVYLDGANMNAQVGL  726 (1001)
T ss_pred             CEEEEeecc--CCCCccHHHHHHHHHHhhhhhheeEEecccc-cccc--cccHHHHHHHHHhcCCEEEecCCCccceecc
Confidence            999988875  34478999999877654   34567777764 4555  2459999999999999999998766432221


Q ss_pred             CCCccccccCCCccEEEEecCccccc----ccccceEEEEeeCCC-CcccchhHHHHHH--hhh------h--ccCCcch
Q 038416          198 TPYVPMGVFGSIVPVITLGSISKRWI----VPGWRLGWLVTSDPN-GILQNSGFVDSIK--GCL------N--AASHPVT  262 (387)
Q Consensus       198 ~~~~~~~~~~~~~~~~~i~s~sK~~~----~~g~r~G~i~~~~~~-~~~~~~~~~~~~~--~~~------~--~~~~~~~  262 (387)
                      ..+.   .+..+   +.=--++|.|.    .+|..+|-|.+.+.- .....-.++.-.+  ...      .  +++..--
T Consensus       727 c~pG---d~GaD---V~HLNLHKTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~IL  800 (1001)
T KOG2040|consen  727 CRPG---DIGAD---VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALIL  800 (1001)
T ss_pred             cCCc---ccccc---ceeecccceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCcceee
Confidence            1111   12222   22223455552    233334554432100 0000000111000  000      0  0000111


Q ss_pred             HHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCc--eEEEEEecCcccccCCCcHHHHHHHHHH
Q 038416          263 FIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQG--AMFVMVKLNVSMLEDIGDDLEFCLKLAK  340 (387)
Q Consensus       263 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ll~  340 (387)
                      +..++...++..   ..+.+.-+...-+++++.++|+..=.+-+. .+.+  +.-+.+++...+.....+..+++.+| .
T Consensus       801 pISwaYikmMG~---~GL~~as~~AiLNaNYMakRLe~hYkil~~-~~~~~vaHEFIlD~r~fK~~agieavDvAKRL-~  875 (1001)
T KOG2040|consen  801 PISWAYIKMMGS---GGLKDASKIAILNANYMAKRLESHYKILFR-GENGLVAHEFILDLRPFKKTAGIEAVDVAKRL-M  875 (1001)
T ss_pred             hhHHHHHHHhcc---cccchhhHHHhhhhHHHHHHHhhccceeEe-cCCcceeeeeeeechhhccccCCcHHHHHHHH-H
Confidence            123333334432   456666666777889999999873112211 1211  11223344332221112455666655 7


Q ss_pred             hcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHH
Q 038416          341 EESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       341 ~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~  382 (387)
                      ++|... |-..+...+++-|-+.  -+++++++..+++-.+-++
T Consensus       876 DYgFHa-PTmswPV~gtLMIEPTESE~k~ElDRfcdAliSIreE  918 (1001)
T KOG2040|consen  876 DYGFHA-PTMSWPVAGTLMIEPTESEDKAELDRFCDALISIREE  918 (1001)
T ss_pred             hccCCC-CccccccCCceEeccCccccHHHHHHHHHHHHHHHHH
Confidence            888765 3344455678888873  3567888877766544443

>PLN02672 methionine S-methyltransferase

Probab=95.79  E-value=0.45  Score=49.84  Aligned_cols=193  Identities=13%  Similarity=0.079  Sum_probs=115.6

Q ss_pred             HHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCC---CCeEEEcCCCC
Q 038416           31 EDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARP---GANILIPRPGY  107 (387)
Q Consensus        31 ~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~---g~~vl~~~p~~  107 (387)
                      +..+...+.+..+.-|.++.|...+|+.||.|++..++++..+++|++.++-..|++.+++.+.-.   -|.- +...-.
T Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  485 (1082)
T PLN02672        407 LAYLASALKGLSYFPCEPPAGSKRFRNLIAGFMRIYHHIPLTPDNVVVFPSRAVAIENALRLFSPRLAIVDEH-LTRWLP  485 (1082)
T ss_pred             HHHHHHHHccCCCCCCCCCccchHHHHHHHHHHHHhcCCcCCccceEEeccHHHHHHHHHHhhChHHHhhhhh-hhccCC
Confidence            445566666666677888899999999999999999999999999999999999999999886311   0111 111112


Q ss_pred             cchHHHhhccCCC--------ceeeeeccCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCccccCCHHHHHHHHHHHH
Q 038416          108 PLYEIHAAGSNNN--------LEARHYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCGNVFSYQHLQKIARTAR  178 (387)
Q Consensus       108 ~~~~~~~~~~~~g--------~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~  178 (387)
                      ..|...+.  ..|        -.+..+..+..      .+.+.+.++. ++.+|+..-...   -..+....+.|.+.++
T Consensus       486 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  554 (1082)
T PLN02672        486 KKWLTSLA--IENATSDSKSDDVITVIEAPRQ------SDLVIELIKKLKPQVVVTGMADF---EMRTSTAFEHLLNVTA  554 (1082)
T ss_pred             HHHHhHhh--hhcccccCccCCeEEEEeCCCc------chHHHHHHHhCCCeEEEEeccch---hhhhHHHHHHHHHHHH
Confidence            22333332  222        11222211111      1233333333 344454333332   2234466899999999


Q ss_pred             hcCcEEeecccccc-cccCCCCCcccccc---CCCccEEEEecCcccccccccceEEEEee
Q 038416          179 NLGIIVIADEVYNH-LAFGSTPYVPMGVF---GSIVPVITLGSISKRWIVPGWRLGWLVTS  235 (387)
Q Consensus       179 ~~~~~li~D~~~~~-~~~~~~~~~~~~~~---~~~~~~~~i~s~sK~~~~~g~r~G~i~~~  235 (387)
                      +.|..++.|.+-.. +.-......-+..+   ....+..++..+-|.-..+.+-+.+++.-
T Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  615 (1082)
T PLN02672        555 EIGARLFLDISDHLELSSLPGSNGVLKYLAGHPLPSHAAIICGLVKNQVYSDLEVAFVISE  615 (1082)
T ss_pred             hhCcEEEEehhhheeeccCCCcccHHHHhcCCCCCcchhHhhhhhhccccccceEEEEecC
Confidence            99999999976542 11000011112111   11234566777888877899999999864

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=94.80  E-value=4.4  Score=39.59  Aligned_cols=265  Identities=14%  Similarity=0.153  Sum_probs=125.7

Q ss_pred             CCEEEcCChHHHHHHHHHhh-cCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEE
Q 038416           74 EDVYLTLGCSQAIEISLSVL-ARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAI  152 (387)
Q Consensus        74 ~~i~~~~g~~~a~~~~~~~l-~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v  152 (387)
                      .+.-+-.-+|.|-+++..+. ..++.+.++...+|+.....++-...+..+. +.+       .|+++... -.++...+
T Consensus       181 aNASLLDEgTAaaEAm~l~~~~~krkk~vvd~~~hpqtlsV~~TRa~~~~i~-v~~-------~~~~~~~~-s~~~v~gv  251 (1001)
T KOG2040|consen  181 ANASLLDEGTAAAEAMALCNRINKRKKFVVDSNCHPQTLSVVKTRAKGFGIK-VVV-------SDIKEADY-SSKDVSGV  251 (1001)
T ss_pred             cchhhhccchhHHHHHHHHHhhcccceEEecCCCCcchhhhhhcccccccee-EEe-------cCHHHhhc-cccceeEE
Confidence            34444444444444444443 2455679999999998776666112222222 111       12332221 12345566


Q ss_pred             EEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeec-ccccccccCCCCCccccccCCCccEEEEecCcccccccccceEE
Q 038416          153 VIINPGNPCGNVFSYQHLQKIARTARNLGIIVIAD-EVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGW  231 (387)
Q Consensus       153 ~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~  231 (387)
                      ++.-|.. -|.+.+   ..++++.+++.+.++++- |--+. .    -..+-..+..   .|.++|-..+ |+|   +||
T Consensus       252 lvQYP~t-~G~i~d---~~el~~~a~~~~s~vv~atDLLaL-t----iLrpPgefGa---DIavGSsQRF-GVP---lGY  315 (1001)
T KOG2040|consen  252 LVQYPDT-EGSVLD---FDELVELAHANGSLVVMATDLLAL-T----ILRPPGEFGA---DIAVGSSQRF-GVP---LGY  315 (1001)
T ss_pred             EEEcCCC-CCcccC---HHHHHHHhhccCceEEEeehhhHH-H----ccCChhhcCc---eeeecccccc-Ccc---ccC
Confidence            6667754 566655   667777777888766542 22111 1    0111122322   3667766554 332   333


Q ss_pred             E-------EeeC-------------CCCcccchhHHHHHHhhh---hcc-CCcchHHHHHHHHHhhh-----ccHHHHHH
Q 038416          232 L-------VTSD-------------PNGILQNSGFVDSIKGCL---NAA-SHPVTFIQAAVPRIVDE-----TNEAFFAK  282 (387)
Q Consensus       232 i-------~~~~-------------~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~l~~-----~~~~~~~~  282 (387)
                      -       .+++             ..+..+++.+.-.+....   ... .+.+.-...|+.+.+..     +....+.+
T Consensus       316 GGPHAaFfAv~~~l~R~mPGRiiGvtkD~~gk~a~RLALQTREQHIrRDKATSNICTAQALLANmaAmyaiYHGp~gL~~  395 (1001)
T KOG2040|consen  316 GGPHAAFFAVSESLVRMMPGRIIGVTKDALGKEAYRLALQTREQHIRRDKATSNICTAQALLANMAAMYAIYHGPHGLKE  395 (1001)
T ss_pred             CCchHHHHHHHHHHHhhCCCceEeeeecccccHHHHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhcCcHHHHH
Confidence            1       1100             001112222221111000   000 11121111121111111     23466888


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe
Q 038416          283 IIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF  362 (387)
Q Consensus       283 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~  362 (387)
                      +.+++......+...|++. +-++++.+   +|=.+++...     .+.+++....+ +++|-+.--    .++.+-+++
T Consensus       396 IArrvh~~T~~l~~~l~~a-ghel~~k~---fFDTLkI~~~-----~s~~~~l~rA~-~~~iNlr~~----ed~tigvsl  461 (1001)
T KOG2040|consen  396 IARRVHNLTLILAEGLKNA-GHELQHKP---FFDTLKIRCG-----CSAEEVLDRAA-KRQINLRLV----EDGTIGVSL  461 (1001)
T ss_pred             HHHHHHHHHHHHHHHHhhc-chhhcccc---ccceEEEEec-----CcHHHHHHHHH-hhcCceEEe----ecCceEEee
Confidence            8888888888888888876 44533222   3333333221     03455555554 445655432    146677777


Q ss_pred             --eCChHhHHHHHHHHH
Q 038416          363 --AAEPATLEDGLERIK  377 (387)
Q Consensus       363 --~~~~e~~~~~~~~l~  377 (387)
                        ..+++|++.++..+.
T Consensus       462 DETv~~~DvddLl~vf~  478 (1001)
T KOG2040|consen  462 DETVTEKDVDDLLWVFN  478 (1001)
T ss_pred             cccccHHHHHHHHHHHc
Confidence              457889999988775

>PRK10595 SOS cell division inhibitor; Provisional

Probab=89.52  E-value=5.3  Score=32.01  Aligned_cols=85  Identities=11%  Similarity=0.030  Sum_probs=57.7

Q ss_pred             hcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCC-CCCccccCCHHHHH
Q 038416           93 LARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINP-GNPCGNVFSYQHLQ  171 (387)
Q Consensus        93 l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p-~nptG~~~~~~~~~  171 (387)
                      +...+.-|+...|-+..+...+.  ..|+....+-.....+..-.+...|++++.+...+++... ..     ++.++++
T Consensus        52 l~~~~rwilwI~PP~~p~~~~L~--~~Gl~l~rvl~v~~~~~~d~Lwa~EqaLrsG~~~aVL~Wlp~~-----l~~~~~R  124 (164)
T PRK10595         52 LGQQSRWQLWLTPQQKLSREWLQ--ASGLPLTKVMQLSQLSPCHTVEAMERALRTGNYSVVLGWLPDE-----LTEEEHA  124 (164)
T ss_pred             HhccCceEEEECCCCCCCHHHHH--HcCCCcccEEEEecCCcHHHHHHHHHHHhhCCCcEEEECCccc-----CCHHHHH
Confidence            34556678778888888888998  8998765543321111122456778888888877777774 23     5668899


Q ss_pred             HHHHHHHhcCcEE
Q 038416          172 KIARTARNLGIIV  184 (387)
Q Consensus       172 ~l~~~~~~~~~~l  184 (387)
                      +|--.|++.+.+.
T Consensus       125 RLQlAAe~g~~l~  137 (164)
T PRK10595        125 RLVDAAQEGNAMG  137 (164)
T ss_pred             HHHHHHHhCCCEE
Confidence            9988888776543

>TIGR00623 sula cell division inhibitor SulA

Probab=88.30  E-value=6.5  Score=31.53  Aligned_cols=84  Identities=11%  Similarity=0.028  Sum_probs=57.4

Q ss_pred             cCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeC-CCCCccccCCHHHHHH
Q 038416           94 ARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIIN-PGNPCGNVFSYQHLQK  172 (387)
Q Consensus        94 ~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~-p~nptG~~~~~~~~~~  172 (387)
                      ...+.-++...|-+..+...+.  ..|++...+-+.......-.+...|++++.++..++++. |+.     ++.+++++
T Consensus        57 s~~~Rwlv~IaPP~~~~~~~L~--~~Gl~l~rvlli~~~~~~d~lwa~EQaLrSG~c~aVL~WLp~~-----l~~~~lRR  129 (168)
T TIGR00623        57 GQQSRWQLWLTPQQKLSKEWVQ--SSGLPLTKVMQISQLSPCNTVESMIRALRTGNYSVVIGWLTDE-----LTEEEHAK  129 (168)
T ss_pred             cccCceEEEECCCCccCHHHHH--HcCCChhHEEEEecCCchhHHHHHHHHHHhCCCcEEEecCCcc-----CCHHHHHH
Confidence            3456677777787778888888  899876555322111112246788889988888777887 533     66688888


Q ss_pred             HHHHHHhcCcEE
Q 038416          173 IARTARNLGIIV  184 (387)
Q Consensus       173 l~~~~~~~~~~l  184 (387)
                      |--.++.-+.+.
T Consensus       130 LqlAA~~G~al~  141 (168)
T TIGR00623       130 LVRAAEEGNAMG  141 (168)
T ss_pred             HHHHHHhCCCeE
Confidence            888887766543

All proteins in this family for which the functions are known are cell division inhibitors. In E. coli, SulA is one of the SOS regulated genes.

>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]

Probab=83.27  E-value=13  Score=33.26  Aligned_cols=58  Identities=19%  Similarity=0.236  Sum_probs=39.0

Q ss_pred             CccCChhhHHHhhc---c---CceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeeccccccc
Q 038416          133 RWEVDLDGVEALAD---E---NTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHL  193 (387)
Q Consensus       133 ~~~~~~~~l~~~~~---~---~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~  193 (387)
                      +..++.+++++.++   .   ...+| +.+.+=|.|  ++.+...+|++.|++.|+.+++|.....+
T Consensus       108 Gp~is~~~~~~~l~~~~~~l~~~d~V-vlsGSlP~g--~~~d~y~~li~~~~~~g~~vilD~Sg~~L  171 (310)
T COG1105         108 GPEISEAELEQFLEQLKALLESDDIV-VLSGSLPPG--VPPDAYAELIRILRQQGAKVILDTSGEAL  171 (310)
T ss_pred             CCCCCHHHHHHHHHHHHHhcccCCEE-EEeCCCCCC--CCHHHHHHHHHHHHhcCCeEEEECChHHH
Confidence            44556666555432   1   22333 344444666  66788999999999999999999887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	387
3pdx_A	402	Crystal Structural Of Mouse Tyrosine Aminotransfera		8e-74
3dyd_A	427	Human Tyrosine Aminotransferase Length = 427		2e-72
1bw0_A	416	Crystal Structure Of Tyrosine Aminotransferase From		8e-50
1xi9_A	406	Alanine Aminotransferase From Pyrococcus Furiosus P		1e-35
1o4s_A	389	Crystal Structure Of Aspartate Aminotransferase (Tm		8e-28
1dju_A	388	Crystal Structure Of Aromatic Aminotransferase From		2e-27
1gde_A	389	Crystal Structure Of Pyrococcus Protein A-1 E-form		6e-27
1v2d_A	381	Crystal Structure Of T.Th Hb8 Glutamine Aminotransf		1e-21
1j32_A	388	Aspartate Aminotransferase From Phormidium Lapideum		3e-21
1b5o_A	385	Thermus Thermophilus Aspartate Aminotransferase Sin		2e-20
3op7_A	375	Crystal Structure Of A Plp-Dependent Aminotransfera		5e-20
1bkg_A	385	Aspartate Aminotransferase From Thermus Thermophilu		7e-20
1gck_A	385	Thermus Thermophilus Aspartate Aminotransferase Dou		9e-20
1gc3_A	385	Thermus Thermophilus Aspartate Aminotransferase Tet		9e-20
5bj3_A	385	Thermus Thermophilus Aspartate Aminotransferase Tet		9e-20
3ele_A	398	Crystal Structure Of Amino Transferase (rer07020700		2e-19
1bjw_A	382	Aspartate Aminotransferase From Thermus Thermophilu		4e-19
3ihj_A	498	Human Alanine Aminotransferase 2 In Complex With Pl		7e-19
2z61_A	370	Crystal Structure Of Mj0684 From Methanococcus Jann		4e-18
1yiy_A	429	Aedes Aegypti Kynurenine Aminotransferase Length =		9e-18
3b46_A	447	Crystal Structure Of Bna3p, A Putative Kynurenine A		3e-17
3tcm_A	500	Crystal Structure Of Alanine Aminotransferase From		3e-17
1yiz_A	429	Aedes Aegypti Kynurenine Aminotrasferase Length = 4		4e-17
2gb3_A	409	Crystal Structure Of Aspartate Aminotransferase (Tm		1e-16
1u08_A	386	Crystal Structure And Reactivity Of Ybdl From Esche		2e-16
2zc0_A	407	Crystal Structure Of An Archaeal Alanine:glyoxylate		7e-16
1w7n_A	422	Crystal Structure Of Human Kynurenine Aminotransfer		1e-15
3fvs_A	422	Human Kynurenine Aminotransferase I In Complex With		3e-15
1w7l_A	422	Crystal Structure Of Human Kynurenine Aminotransfer		5e-15
1wst_A	417	Crystal Structure Of Multiple Substrate Aminotransf		9e-15
2o0r_A	411	The Three-Dimensional Structure Of N-Succinyldiamin		4e-14
3e2z_B	410	Crystal Structure Of Mouse Kynurenine Aminotransfer		5e-14
3e2f_A	410	Crystal Structure Of Mouse Kynurenine Aminotransfer		2e-13
2egy_A	397	Crystal Structure Of Lysn, Alpha-Aminoadipate Amino		7e-13
3h14_A	391	Crystal Structure Of A Putative Aminotransferase Fr		1e-12
3aov_A	448	Crystal Structure Of Pyrococcus Horikoshii Kynureni		2e-12
1x0m_A	403	A Human Kynurenine Aminotransferase Ii Homologue Fr		2e-12
3b1c_A	392	Crystal Structure Of Betac-S Lyase From Streptococc		1e-11
1ynu_A	473	Crystal Structure Of Apple Acc Synthase In Complex		2e-11
3piu_A	410	High-Resolution Structure Of Native Malus Domestica		2e-11
1m7y_A	435	Crystal Structure Of Apple Acc Synthase In Complex		2e-11
1b8g_A	429	1-aminocyclopropane-1-carboxylate Synthase Length =		2e-11
3jtx_A	396	Crystal Structure Of Aminotransferase (np_283882.1)		2e-10
3l8a_A	421	Crystal Structure Of Metc From Streptococcus Mutans		2e-10
1iax_A	428	Crystal Structure Of Acc Synthase Complexed With Pl		5e-10
4ge7_A	439	Kynurenine Aminotransferase Ii Inhibitors Length =		6e-10
4gdy_A	439	Kynurenine Aminotransferase Ii Inhibitors Length =		1e-09
2xh1_A	425	Crystal Structure Of Human Kat Ii-Inhibitor Complex		4e-09
2x5d_A	412	Crystal Structure Of A Probable Aminotransferase Fr		4e-09
2r2n_A	425	The Crystal Structure Of Human Kynurenine Aminotran		4e-09
2qlr_A	425	Crystal Structure Of Human Kynurenine Aminotransfer		4e-09
3ue8_A	439	Kynurenine Aminotransferase Ii Inhibitors Length =		4e-09
4dgt_A	391	Crystal Structure Of Plp-Bound Putative Aminotransf		5e-09
2vgz_A	427	Crystal Structure Of Human Kynurenine Aminotransfer		5e-09
3g7q_A	417	Crystal Structure Of Valine-Pyruvate Aminotransfera		6e-09
3t32_B	383	Crystal Structure Of A Putative C-S Lyase From Baci		2e-08
3fdb_A	377	Crystal Structure Of A Putative Plp-Dependent Beta-		3e-08
3f6t_A	533	Crystal Structure Of Aspartate Aminotransferase (E.		9e-08
2o1b_A	404	Structure Of Aminotransferase From Staphylococcus A		1e-07
2z1z_A	432	Crystal Structure Of Ll-diaminopimelate Aminotransf		3e-07
1gew_A	356	Crystal Structure Of Histidinol-Phosphate Aminotran		3e-07
3nra_A	407	Crystal Structure Of An Aspartate Aminotransferase		4e-07
3cq4_A	376	Histidinol-Phosphate Aminotransferase From Coryneba		5e-07
3eia_A	432	Crystal Structure Of K270q Variant Of Ll-Diaminopim		6e-07
3cq5_A	369	Histidinol-Phosphate Aminotransferase From Coryneba		7e-07
3ei8_A	432	Crystal Structure Of K270n Variant Of Ll-Diaminopim		1e-06
2z20_A	432	Crystal Structure Of Ll-diaminopimelate Aminotransf		2e-06
4fl0_A	456	Crystal Structure Of Ald1 From Arabidopsis Thaliana		2e-06
1fg3_A	356	Crystal Structure Of L-Histidinol Phosphate Aminotr		2e-06
3ftb_A	361	The Crystal Structure Of The Histidinol-Phosphate A		2e-06
3cq6_A	369	Histidinol-Phosphate Aminotransferase From Coryneba		3e-06
3ffh_A	363	The Crystal Structure Of Histidinol-phosphate Amino		4e-06
3ezs_A	376	Crystal Structure Of Aminotransferase Aspb (Np_2074		5e-06
2dou_A	376	Probable N-Succinyldiaminopimelate Aminotransferase		5e-06
1lkc_A	364	Crystal Structure Of L-Threonine-O-3-Phosphate Deca		6e-06
3asa_A	400	Crystal Structure Of Apo-Ll-Diaminopimelate Aminotr		9e-06
3dzz_A	391	Crystal Structure Of A Putative Plp-Dependent Amino		1e-05
1c7n_A	399	Crystal Structure Of Cystalysin From Treponema Dent		1e-05
1d2f_A	390	X-Ray Structure Of Maly From Escherichia Coli: A Py		3e-05
3euc_A	367	Crystal Structure Of Histidinol-Phosphate Aminotran		6e-04

>pdb|3PDX|A Chain A, Crystal Structural Of Mouse Tyrosine Aminotransferase Length = 402

Iteration: 1
 Score =  274 bits (700), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 142/363 (39%), Positives = 210/363 (57%), Gaps = 8/363 (2%)
Query: 22  SLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLN-RDLPYKLSPEDVYLTL 80
           +L +D  V + A+ DAL +  YN Y+P++G  S+R  +A Y +  + P  L  +DV LT 
Sbjct: 46  NLPTDPEVTQ-AMKDALDSGKYNGYAPSIGYLSSREEVASYYHCPEAP--LEAKDVILTS 102
Query: 81  GCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDG 140
           GCSQAIE+ L+VLA PG NILIPRPG+ LY   A   +  +E + Y+LLPEK WE+DL  
Sbjct: 103 GCSQAIELCLAVLANPGQNILIPRPGFSLYRTLA--ESMGIEVKLYNLLPEKSWEIDLKQ 160
Query: 141 VEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPY 200
           +E+L DE T  +V+ NP NPCG+VFS +HLQKI   A    + ++ADE+Y  + F    Y
Sbjct: 161 LESLIDEKTACLVVNNPSNPCGSVFSKRHLQKILAVAERQCVPILADEIYGDMVFSDCKY 220
Query: 201 VPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHP 260
            PM    + VP+++ G ++ RW+VPGWRLGW++  D   I  N    D +         P
Sbjct: 221 EPMATLSTNVPILSCGGLAXRWLVPGWRLGWILIHDRRDIFGNE-IRDGLVKLSQRILGP 279
Query: 261 VTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKL 320
            T +Q A+  I+  T + F+   +  LK  AD+CY  +  IP +  PV+P GAM++MV +
Sbjct: 280 CTIVQGALKSILQRTPQEFYQDTLSFLKSNADLCYGALSAIPGLQ-PVRPSGAMYLMVGI 338
Query: 321 NVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFC 380
            +    +  +D+EF  +L  E+SV  LP       N+ R+        + +   RI+ FC
Sbjct: 339 EMEHFPEFENDVEFTERLIAEQSVHCLPATCFEYPNFFRVVITVPEVMMLEACSRIQEFC 398
Query: 381 QRH 383
           ++H
Sbjct: 399 EQH 401

>pdb|3DYD|A Chain A, Human Tyrosine Aminotransferase Length = 427

Iteration: 1
 Score =  269 bits (687), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 140/363 (38%), Positives = 211/363 (58%), Gaps = 8/363 (2%)
Query: 22  SLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLN-RDLPYKLSPEDVYLTL 80
           +L +D  V + A+ DAL +  YN Y+P++G  S+R  IA Y +  + P  L  +DV LT 
Sbjct: 69  NLPTDPEVTQ-AMKDALDSGKYNGYAPSIGFLSSREEIASYYHCPEAP--LEAKDVILTS 125
Query: 81  GCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDG 140
           GCSQAI++ L+VLA PG NIL+PRPG+ LY+  A   +  +E + Y+LLPEK WE+DL  
Sbjct: 126 GCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLA--ESMGIEVKLYNLLPEKSWEIDLKQ 183
Query: 141 VEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPY 200
           +E L DE T  +++ NP NPCG+VFS +HLQKI   A    + ++ADE+Y  + F    Y
Sbjct: 184 LEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKY 243
Query: 201 VPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHP 260
            P+    + VP+++ G ++KRW+VPGWRLGW++  D   I  N    D +         P
Sbjct: 244 EPLATLSTDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNE-IRDGLVKLSQRILGP 302
Query: 261 VTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKL 320
            T +Q A+  I+  T   F+   +  LK  AD+CY  +  IP +  PV+P GAM++MV +
Sbjct: 303 CTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLR-PVRPSGAMYLMVGI 361
Query: 321 NVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFC 380
            +    +  +D+EF  +L  E+SV  LP       N++R+        + +   RI+ FC
Sbjct: 362 EMEHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVITVPEVMMLEACSRIQEFC 421
Query: 381 QRH 383
           ++H
Sbjct: 422 EQH 424

>pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From Trypanosoma Cruzi Length = 416

Iteration: 1
 Score =  194 bits (492), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 118/360 (32%), Positives = 187/360 (51%), Gaps = 17/360 (4%)
Query: 36  DALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYK------LSPEDVYLTLGCSQAIEIS 89
           +A+ +   N Y PT+G P AR  +A +      +K      +  ++V L  G S  I ++
Sbjct: 61  EAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMA 120
Query: 90  LSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENT 149
           ++ +   G   L+P+PG+P YE         +    Y+  PE  WE DLD +  L D+ T
Sbjct: 121 ITAICDAGDYALVPQPGFPHYETVCKAYG--IGMHFYNCRPENDWEADLDEIRRLKDDKT 178
Query: 150 VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAF-GSTP---YVPMGV 205
             +++ NP NPCG+ FS +H++ I R A  L + + +DE+Y  + F G  P   +  +  
Sbjct: 179 KLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVAD 238
Query: 206 FGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQ 265
           F + VP + LG  +   +VPGWRLGWL+  DP+G      F++ +K        P T +Q
Sbjct: 239 FETTVPRVILGGTAXNLVVPGWRLGWLLYVDPHG--NGPSFLEGLKRVGMLVCGPCTVVQ 296
Query: 266 AAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCI-TCPVKPQGAMFVMVKLNVSM 324
           AA+   +  T +    +I+  ++E+A   Y  I E  CI   P  P+GAM++M ++++  
Sbjct: 297 AALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGE--CIGLAPTMPRGAMYLMSRIDLEK 354
Query: 325 LEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHA 384
             DI  D+EF  KL +EE+V +LPG       + R+          + +ERIKAFCQRHA
Sbjct: 355 YRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYREAVERIKAFCQRHA 414

>pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus Pfu-1397077-001 Length = 406

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 171/361 (47%), Gaps = 19/361 (5%)
Query: 31  EDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISL 90
           ++A   A++  H N Y  + G+P  R+ I +   R     ++P+DV +T   ++A+++  
Sbjct: 60  KEAYCKAIKEGH-NYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIF 118
Query: 91  SVLARPGANILIPRPGYPLYE--IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADEN 148
             L  PG  IL+P P YP Y   +   G     +   Y  + E+ W+ D+D +     + 
Sbjct: 119 GALLDPGDEILVPGPSYPPYTGLVKFYGG----KPVEYRTIEEEDWQPDIDDIRKKITDR 174
Query: 149 TVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS 208
           T AI +INP NP G ++  + L++I   A    I VI+DE+Y+ + +      P G    
Sbjct: 175 TKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISP-GSLTK 233
Query: 209 IVPVITLGSISKRWIVPGWRLGWLVTSDP-NGILQNSGFVDSIKGCLNAASHPVTFIQAA 267
            VPVI +  +SK +   GWRLG++   DP N + +    +D +       + P  F  AA
Sbjct: 234 DVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQF--AA 291
Query: 268 VPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLED 327
           +  +    +  +  + +  LKE  D  Y+R+ EIP I+   KPQGA ++  K+ V   + 
Sbjct: 292 IAGLTGPMD--YLKEYMKKLKERRDYIYKRLNEIPGIST-TKPQGAFYIFPKIEVGPWK- 347
Query: 328 IGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQRHAK 385
             +D EF L +     V+ + G   G       R  F      LE+ ++R + F +   K
Sbjct: 348 --NDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFMKERLK 405
Query: 386 K 386
           +
Sbjct: 406 E 406

>pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255) From Thermotoga Maritima At 1.90 A Resolution Length = 389

Iteration: 1
 Score =  121 bits (303), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 158/337 (46%), Gaps = 26/337 (7%)
Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRP 105
           Y+   G+   R GIA  +       +SP+ V +T G  QA+  +   L  PG  +++  P
Sbjct: 74  YTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSP 133
Query: 106 GYPLY--EIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGN 163
            +  Y  +I  AG   N+     +    K ++  L+ VE L    T A++I +P NP G 
Sbjct: 134 VWVSYIPQIILAGGTVNV----VETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGV 189
Query: 164 VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWI 223
           V+  + L+ + R A+     +I+DEVY+ L +       + V      ++ +   SK   
Sbjct: 190 VYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHS 249
Query: 224 VPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKI 283
           + GWR+G+L++S+       S        C+N      T  Q A  + ++  N    + +
Sbjct: 250 MTGWRVGYLISSEKVAT-AVSKIQSHTTSCIN------TVAQYAALKALEVDN----SYM 298
Query: 284 IGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEES 343
           +   KE  +   ER+K++      V+P+GA ++  K+        GDD++FC +L +E+ 
Sbjct: 299 VQTFKERKNFVVERLKKMGV--KFVEPEGAFYLFFKVR-------GDDVKFCERLLEEKK 349
Query: 344 VIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFC 380
           V ++PG       ++R++FA     L + L+RI+ F 
Sbjct: 350 VALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFL 386

>pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From Pyrococcus Horikoshii Ot3 Length = 388

Iteration: 1
 Score =  119 bits (299), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 167/340 (49%), Gaps = 26/340 (7%)
Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIEISLSVLARPGANILIPR 104
           Y P +G+   R  IA+ L +    +  P+ ++ + LG +QA  + LS   + G  +LIP 
Sbjct: 58  YGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPT 117
Query: 105 PGYPLYE---IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPC 161
           P +  Y    I A G    +E   Y+   E  + +++D ++    + T A++I +P NP 
Sbjct: 118 PAFVSYAPAVILAGG--KPVEVPTYE---EDEFRLNVDELKKYVTDKTRALIINSPCNPT 172
Query: 162 GNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF-GSIVPVITLGSISK 220
           G V + + L++IA       +IVI+DEVY H  +    +  +    G     IT+   SK
Sbjct: 173 GAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSK 232
Query: 221 RWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQ-AAVPRIVDETNEAF 279
            + + GWRLG++    P+ I++       +K  +  A+ PVTFIQ AA   + DE +   
Sbjct: 233 TFAMTGWRLGFVAA--PSWIIER-----MVKFQMYNATCPVTFIQYAAAKALKDERSWKA 285
Query: 280 FAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLA 339
             ++         + ++R+ E+   T  VKP+GA ++  ++  + L       +F   + 
Sbjct: 286 VEEMRKEYDRRRKLVWKRLNEMGLPT--VKPKGAFYIFPRIRDTGL----TSKKFSELML 339
Query: 340 KEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIK 377
           KE  V ++PG   G   + ++RI++A     LE+ +ER++
Sbjct: 340 KEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMERME 379

>pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form Length = 389

Iteration: 1
 Score =  118 bits (295), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 167/340 (49%), Gaps = 26/340 (7%)
Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIEISLSVLARPGANILIPR 104
           Y P +G+   R  IA+ L +    +  P+ ++ + LG +QA  + LS   + G  +LIP 
Sbjct: 59  YGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPT 118
Query: 105 PGYPLYE---IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPC 161
           P +  Y    I A G    +E   Y+   E  + +++D ++    + T A++I +P NP 
Sbjct: 119 PAFVSYAPAVILAGG--KPVEVPTYE---EDEFRLNVDELKKYVTDKTRALIINSPCNPT 173
Query: 162 GNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF-GSIVPVITLGSISK 220
           G V + + L++IA       +IVI+DEVY H  +    +  +    G     IT+   SK
Sbjct: 174 GAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSK 233
Query: 221 RWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQ-AAVPRIVDETNEAF 279
            + + GWRLG++    P+ I++       +K  +  A+ PVTFIQ AA   + DE +   
Sbjct: 234 TFAMTGWRLGFVAA--PSWIIER-----MVKFQMYNATCPVTFIQYAAAKALKDERSWKA 286
Query: 280 FAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLA 339
             ++         + ++R+ E+   T  VKP+GA ++  ++  + L       +F   + 
Sbjct: 287 VEEMRKEYDRRRKLVWKRLNEMGLPT--VKPKGAFYIFPRIRDTGL----TSKKFSELML 340
Query: 340 KEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIK 377
           KE  V ++PG   G   + ++RI++A     LE+ ++R++
Sbjct: 341 KEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRME 380

>pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase Length = 381

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 154/356 (43%), Gaps = 47/356 (13%)
Query: 34  VVDALRTA--HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLS 91
           +++A+R A    + Y+P  G+P+ R  +A+       + + PE V +T G ++A+ + L 
Sbjct: 43  LLEAVRRALGRQDQYAPPAGLPALREALAE------EFAVEPESVVVTSGATEALYVLLQ 96
Query: 92  VLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVA 151
            L  PG  +++  P + +Y   A  +         DL PE  + +DL  +E      T A
Sbjct: 97  SLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEG-FRLDLSALEKALTPRTRA 155
Query: 152 IVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTP-----YVPMGVF 206
           +++  P NP G VF  + L+ IAR AR   + +I+DEVY+ L +G  P     + P   F
Sbjct: 156 LLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTF 215
Query: 207 GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPV-TFIQ 265
                  T+GS  KR    G+R+GW+V            F+  + G     S    T +Q
Sbjct: 216 -------TVGSAGKRLEATGYRVGWIVGPKE--------FMPRLAGMRQWTSFSAPTPLQ 260
Query: 266 AAVPRIVD-ETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSM 324
           A V   +     E F+  +    +   D+    ++ +        P+G  F+M +L    
Sbjct: 261 AGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVY--VPEGTYFLMAELP--- 315
Query: 325 LEDIGDDLEFCLKLAKEESVIILPGRTVGM----KNWLRIAFAAEPATLEDGLERI 376
               G D     +L +E  V ++P     +    K+  R AF      L   LER+
Sbjct: 316 ----GWD---AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERL 364

>pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum Length = 388

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 156/342 (45%), Gaps = 29/342 (8%)
Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRP 105
           Y P  G P  R  IA  L RD       +++ +T G  Q+I   +  +  PG  ++IP P
Sbjct: 63  YGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAP 122
Query: 106 ---GYPLYEIHAAGSNNNLEARHYDLLP---EKRWEVDLDGVEALADENTVAIVIINPGN 159
               YP     A G+          +LP   E +++V  + +       T  +V   P N
Sbjct: 123 FWVSYPEMVKLAEGTPV--------ILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSN 174
Query: 160 PCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFG--SIVPVITLGS 217
           P G V++   ++ IA+ A   G+ V++DE+Y  + +    ++ +G     +    +    
Sbjct: 175 PTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSG 234
Query: 218 ISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNE 277
            +K + + GWR+G+L  + P  +++ +     I+G  ++ S+  TF Q       + + +
Sbjct: 235 FAKTYAMTGWRVGFL--AGPVPLVKAA---TKIQG--HSTSNVCTFAQYGAIAAYENSQD 287
Query: 278 AFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLK 337
               +++    E      + +  +P + CP KP GA ++      S+ +     L+FC +
Sbjct: 288 C-VQEMLAAFAERRRYMLDALNAMPGLECP-KPDGAFYMF----PSIAKTGRSSLDFCSE 341
Query: 338 LAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAF 379
           L  +  V  +PG   G  + +R+++A +  T++ G+ER++ F
Sbjct: 342 LLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKF 383

>pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single Mutant 1 Length = 385

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 146/344 (42%), Gaps = 30/344 (8%)
Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRP 105
           Y+P  G+P  R  +A+   R+    ++PE+  +T+G SQA+      +  PG  +++  P
Sbjct: 64  YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSP 123
Query: 106 ---GYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCG 162
               YP     A G    +E      LPE+ +  D + V       T A+V+ +P NP G
Sbjct: 124 YWVSYPEMVRFAGGVVVEVET-----LPEEGFVPDPERVRRAITPRTKALVVNSPNNPTG 178
Query: 163 NVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVP--VITLGSISK 220
            V+  + L+ +AR A      +++DE+Y HL +    + P    G + P   +T+   +K
Sbjct: 179 AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSP----GRVAPEHTLTVNGAAK 234
Query: 221 RWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIV--DETNEA 278
            + + GWR+G+     P  +++    V S      + + P T  Q A    +   E + A
Sbjct: 235 AFAMTGWRIGY--ACGPKEVIKAMASVSS-----QSTTSPDTIAQWATLEALTNQEASRA 287
Query: 279 FFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKL 338
           F        +   D+  E +  +      V+P GA +V++  +      I  D     + 
Sbjct: 288 FVEMAREAYRRRRDLLLEGLTALGLKA--VRPSGAFYVLMDTS-----PIAPDEVRAAER 340
Query: 339 AKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQR 382
             E  V ++PG        +R+++A     L   LER      R
Sbjct: 341 LLEAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARVLGR 384

>pdb|3OP7|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase (Zp_03625122.1) From Streptococcus Suis 89-1591 At 1.70 A Resolution Length = 375

Iteration: 1
 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 155/343 (45%), Gaps = 39/343 (11%)
Query: 51  GVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYP-L 109
           G P+ ++ ++      L   + PE +  T G + A  + L  L  PG +++   P Y  L
Sbjct: 64  GSPAFKKSVSQ-----LYTGVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQL 118
Query: 110 YEI-HAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ 168
           Y+I  + G+  +L    + +  E  W  DL+ +  L    T  I I N  NP G V    
Sbjct: 119 YDIPKSLGAEVDL----WQIEEENGWLPDLEKLRQLIRPTTKXICINNANNPTGAVXDRT 174
Query: 169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPV----ITLGSISKRWIV 224
           +L+++   A  +G  +++DEVY   +    P        SI+ V    I + S+S  + +
Sbjct: 175 YLEELVEIASEVGAYILSDEVYRSFSELDVP--------SIIEVYDKGIAVNSLSXTYSL 226
Query: 225 PGWRLGWLVTSDP-NGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKI 283
           PG R+GW+  +     IL++  + D    C       V  +  A  + + E N       
Sbjct: 227 PGIRIGWVAANHQVTDILRD--YRDYTXICAGVFDDLVAQLALAHYQEILERNRH----- 279
Query: 284 IGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEES 343
             +L+E   I  + I+E P ++  ++P       VK+ V    +     +FCL+L +E  
Sbjct: 280 --ILEENLAILDQWIEEEPLVSY-IRPAVVSTSFVKIAVDXPXE-----DFCLQLLQEHG 331
Query: 344 VIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAKK 386
           V+++PG       ++R+ FA E  TL  GLE++  F +R  K+
Sbjct: 332 VLLVPGNRFERDGYVRLGFACEQETLIKGLEKLSQFLRRFDKE 374

>pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With Maleate Length = 385

Iteration: 1
 Score = 94.7 bits (234), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 145/344 (42%), Gaps = 30/344 (8%)
Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRP 105
           Y+P  G+P  R  +A+   R+    ++PE+  +T+G  QA+      +  PG  +++  P
Sbjct: 64  YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGKQALFNLFQAILDPGDEVIVLSP 123
Query: 106 ---GYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCG 162
               YP     A G    +E      LPE+ +  D + V       T A+V+ +P NP G
Sbjct: 124 YWVSYPEMVRFAGGVVVEVET-----LPEEGFVPDPERVRRAITPRTKALVVNSPNNPTG 178
Query: 163 NVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVP--VITLGSISK 220
            V+  + L+ +AR A      +++DE+Y HL +    + P    G + P   +T+   +K
Sbjct: 179 AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSP----GRVAPEHTLTVNGAAK 234
Query: 221 RWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIV--DETNEA 278
            + + GWR+G+     P  +++    V S      + + P T  Q A    +   E + A
Sbjct: 235 AFAMTGWRIGY--ACGPKEVIKAMASVSS-----QSTTSPDTIAQWATLEALTNQEASRA 287
Query: 279 FFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKL 338
           F        +   D+  E +  +      V+P GA +V++  +      I  D     + 
Sbjct: 288 FVEMAREAYRRRRDLLLEGLTALGLKA--VRPSGAFYVLMDTS-----PIAPDEVRAAER 340
Query: 339 AKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQR 382
             E  V ++PG        +R+++A     L   LER      R
Sbjct: 341 LLEAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARVLGR 384

>pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double Mutant 1 Complexed With Aspartate Length = 385

Iteration: 1
 Score = 94.7 bits (234), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 145/344 (42%), Gaps = 30/344 (8%)
Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRP 105
           Y+P  G+P  R  +A+   R+    ++PE+  +T+G SQA+      +  PG  +++  P
Sbjct: 64  YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSP 123
Query: 106 ---GYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCG 162
               YP     A G    +E      LPE+ +  D + V       T A+V+ +P NP G
Sbjct: 124 YWVSYPEMVRFAGGVVVEVET-----LPEEGFVPDPERVRRAITPRTKALVVNSPNNPTG 178
Query: 163 NVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVP--VITLGSISK 220
            V+  + L+ +AR A      +++DE+Y HL +    + P    G + P   +T+   +K
Sbjct: 179 AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSP----GRVAPEHTLTVNGAAK 234
Query: 221 RWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIV--DETNEA 278
            + + GWR+G+     P  +++    V        + + P T  Q A    +   E + A
Sbjct: 235 AFAMTGWRIGY--ACGPKEVIKAMASVSR-----QSTTSPDTIAQWATLEALTNQEASRA 287
Query: 279 FFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKL 338
           F        +   D+  E +  +      V+P GA +V++  +      I  D     + 
Sbjct: 288 FVEMAREAYRRRRDLLLEGLTALGLKA--VRPSGAFYVLMDTS-----PIAPDEVRAAER 340
Query: 339 AKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQR 382
             E  V ++PG        +R+++A     L   LER      R
Sbjct: 341 LLEAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARVLGR 384

>pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 2 Complexed With Tryptophan Length = 385

Iteration: 1
 Score = 94.4 bits (233), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 145/344 (42%), Gaps = 30/344 (8%)
Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRP 105
           Y+P  G+P  R  +A+   R+    ++PE+  +T+G SQA+      +  PG  +++  P
Sbjct: 64  YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSP 123
Query: 106 ---GYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCG 162
               YP     A G    +E      LPE+ +  D + V       T A+V+ +P NP G
Sbjct: 124 YWVSYPEMVRFAGGVVVEVET-----LPEEGFVPDPERVRRAITPRTKALVVNSPNNPTG 178
Query: 163 NVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVP--VITLGSISK 220
            V+  + L+ +AR A      +++DE+Y HL +    + P    G + P   +T+   +K
Sbjct: 179 AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSP----GRVAPEHTLTVNGAAK 234
Query: 221 RWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIV--DETNEA 278
            + + GWR+G+     P  +++    V        + + P T  Q A    +   E + A
Sbjct: 235 AFAMTGWRIGY--ACGPKEVIKAMASVSR-----QSTTSPDTIAQWATLEALTNQEASRA 287
Query: 279 FFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKL 338
           F        +   D+  E +  +      V+P GA +V++  +      I  D     + 
Sbjct: 288 FVEMAREAYRRRRDLLLEGLTALGLKA--VRPSGAFYVLMDTS-----PIAPDEVRAAER 340
Query: 339 AKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQR 382
             E  V ++PG        +R+++A     L   LER      R
Sbjct: 341 LLEAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARVLGR 384

>pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 1 Length = 385

Iteration: 1
 Score = 94.4 bits (233), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 145/344 (42%), Gaps = 30/344 (8%)
Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRP 105
           Y+P  G+P  R  +A+   R+    ++PE+  +T+G SQA+      +  PG  +++  P
Sbjct: 64  YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSP 123
Query: 106 ---GYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCG 162
               YP     A G    +E      LPE+ +  D + V       T A+V+ +P NP G
Sbjct: 124 YWVSYPEMVRFAGGVVVEVET-----LPEEGFVPDPERVRRAITPRTKALVVNSPNNPTG 178
Query: 163 NVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVP--VITLGSISK 220
            V+  + L+ +AR A      +++DE+Y HL +    + P    G + P   +T+   +K
Sbjct: 179 AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSP----GRVAPEHTLTVNGAAK 234
Query: 221 RWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIV--DETNEA 278
            + + GWR+G+     P  +++    V        + + P T  Q A    +   E + A
Sbjct: 235 AFAMTGWRIGY--ACGPKEVIKAMASVSR-----QSTTSPDTIAQWATLEALTNQEASRA 287
Query: 279 FFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKL 338
           F        +   D+  E +  +      V+P GA +V++  +      I  D     + 
Sbjct: 288 FVEMAREAYRRRRDLLLEGLTALGLKA--VRPSGAFYVLMDTS-----PIAPDEVRAAER 340
Query: 339 AKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQR 382
             E  V ++PG        +R+++A     L   LER      R
Sbjct: 341 LLEAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARVLGR 384

>pdb|3ELE|A Chain A, Crystal Structure Of Amino Transferase (rer070207001803) From Eubacterium Rectale At 2.10 A Resolution Length = 398

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 155/351 (44%), Gaps = 35/351 (9%)
Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIP-R 104
           Y+   G    R  IA++LN       + +++Y T G + ++ I    L     +  I   
Sbjct: 72  YTSAQGDVETRAAIAEFLNNTHGTHFNADNLYXTXGAAASLSICFRALTSDAYDEFITIA 131
Query: 105 PGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNV 164
           P +P Y++    +   L     D    + +++D D +E   + +T  ++I +P NP G V
Sbjct: 132 PYFPEYKVFVNAAGARLVEVPADT---EHFQIDFDALEERINAHTRGVIINSPNNPSGTV 188
Query: 165 FSYQHLQKIA----RTARNLG--IIVIADEVYNHLAFG--STPYVPMGVFGSIVPVITLG 216
           +S + ++K++    + ++ +G  I +IADE Y  + +     P+V      ++V      
Sbjct: 189 YSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCY---- 244
Query: 217 SISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPV--TFIQAAVPRIVDE 274
           S SK   +PG R+G+++   P+ +   +    ++ G   A  +    +  Q  + +    
Sbjct: 245 SYSKSLSLPGERIGYVLV--PDEVYDKAELYAAVCGAGRALGYVCAPSLFQKXIVKCQGA 302
Query: 275 TNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEF 334
           T +      I   KE  D+ YE +  I    C  KP GA +  VK     LED  D   F
Sbjct: 303 TGD------INAYKENRDLLYEGLTRIG-YHC-FKPDGAFYXFVK----ALED--DSNAF 348
Query: 335 CLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAK 385
           C K AKEE V+I+     G   W+RI++  +   ++      +   +++ K
Sbjct: 349 CEK-AKEEDVLIVAADGFGCPGWVRISYCVDREXIKHSXPAFEKIYKKYNK 398

>pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus Length = 382

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 143/338 (42%), Gaps = 30/338 (8%)
Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRP 105
           Y+P  G+P  R  +A+   R+    ++PE+  +T+G  QA+      +  PG  +++  P
Sbjct: 64  YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGKQALFNLFQAILDPGDEVIVLSP 123
Query: 106 ---GYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCG 162
               YP     A G    +E      LPE+ +  D + V       T A+V+ +P NP G
Sbjct: 124 YWVSYPEMVRFAGGVVVEVET-----LPEEGFVPDPERVRRAITPRTKALVVNSPNNPTG 178
Query: 163 NVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVP--VITLGSISK 220
            V+  + L+ +AR A      +++DE+Y HL +    + P    G + P   +T+   + 
Sbjct: 179 AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSP----GRVAPEHTLTVNGAAX 234
Query: 221 RWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIV--DETNEA 278
            + + GWR+G+     P  +++    V S      + + P T  Q A    +   E + A
Sbjct: 235 AFAMTGWRIGY--ACGPKEVIKAMASVSS-----QSTTSPDTIAQWATLEALTNQEASRA 287
Query: 279 FFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKL 338
           F        +   D+  E +  +      V+P GA +V++  +      I  D     + 
Sbjct: 288 FVEMAREAYRRRRDLLLEGLTALGLKA--VRPSGAFYVLMDTS-----PIAPDEVRAAER 340
Query: 339 AKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERI 376
             E  V ++PG        +R+++A     L   LER 
Sbjct: 341 LLEAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERF 378

>pdb|3IHJ|A Chain A, Human Alanine Aminotransferase 2 In Complex With Plp Length = 498

Iteration: 1
 Score = 91.3 bits (225), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 96/399 (24%), Positives = 172/399 (43%), Gaps = 45/399 (11%)
Query: 22  SLLSDSTVAEDA------VVDALRTAHYNCYSPTLGVPSARRGIADYLNR-DLPYKLSPE 74
           +LL   +  EDA      ++ A        YS + GV   R  +A Y+ R D      P+
Sbjct: 95  NLLDSPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPD 154
Query: 75  DVYLTLGCSQAIEISLSVLARPGAN----ILIPRPGYPLYEIHAAGSNNNLEARHYDLLP 130
           ++YLT G S  I   L +L   G      ++IP P YPLY   A  S  +    +Y L  
Sbjct: 155 NIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYS--AVISELDAIQVNYYLDE 212
Query: 131 EKRWEVDLDGVEALADE-----NTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVI 185
           E  W ++++ +     E     +   + IINPGNP G V S + ++ +   A    + ++
Sbjct: 213 ENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLL 272
Query: 186 ADEVYN---------HLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVP-GWRLGWLVTS 235
           ADEVY            +F    Y     + S V + +  S SK ++   G+R G++   
Sbjct: 273 ADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVI 332
Query: 236 DPNGILQNSGF-VDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAK---IIGLLKETA 291
           + +  ++     + S++ C   +      I    P   +E+ E F  +   ++G L + A
Sbjct: 333 NLHPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKA 392
Query: 292 DICYERIKEIPCITC-PVKPQGAMFVMVKLNV-------SMLEDIGDDLEFCLKLAKEES 343
            +  +   ++P I C P+  QGAM+   ++ +       +    +  D+ +C+KL +E  
Sbjct: 393 KLTEDLFNQVPGIHCNPL--QGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETG 450
Query: 344 VIILPGRTVGMKN---WLRIAFAAEPATLEDGLERIKAF 379
           + ++PG   G +      R+        L+  L+++K F
Sbjct: 451 ICVVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVKDF 489

>pdb|2Z61|A Chain A, Crystal Structure Of Mj0684 From Methanococcus Jannaschii Reveals Its Similarity In The Active Site To Kynurenine Aminotransferases Length = 370

Iteration: 1
 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 153/346 (44%), Gaps = 46/346 (13%)
Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRP 105
           Y+ + G+   R  I++         + P+++ +T G S  +  +LS +   G  +LI  P
Sbjct: 62  YTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNP 121
Query: 106 GYPLYE--IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGN 163
            YP Y+  I   G+                 +  ++ +E    + T AI+I +P NP G 
Sbjct: 122 CYPCYKNFIRFLGAKPVF------------CDFTVESLEEALSDKTKAIIINSPSNPLGE 169
Query: 164 VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWI 223
           V      ++I   A      +I+DE+YN L +    Y  +    ++   I +   S  + 
Sbjct: 170 VID----REIYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSXLYA 225
Query: 224 VPGWRLGWLVTSDP--NGIL--QNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAF 279
           + GWR+G+++++D     IL  Q + F+ +      AA   +   +    R ++   + F
Sbjct: 226 MTGWRIGYVISNDEIIEAILKLQQNLFISAPTISQYAA---LKAFEKETEREINSMIKEF 282
Query: 280 FAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDD-LEFCLKL 338
             +   +LK   D  +E       +  P+   GA +V          +IG+D  EF  KL
Sbjct: 283 DRRRRLVLKYVKDFGWE-------VNNPI---GAYYV--------FPNIGEDGREFAYKL 324
Query: 339 AKEESVIILPGRTVGMK--NWLRIAFAAEPATLEDGLERIKAFCQR 382
            KE+ V + PG   G K  N++RI++A     +++GLERIK F  +
Sbjct: 325 LKEKFVALTPGIGFGSKGKNYIRISYANSYENIKEGLERIKEFLNK 370

>pdb|1YIY|A Chain A, Aedes Aegypti Kynurenine Aminotransferase Length = 429

Iteration: 1
 Score = 87.8 bits (216), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 149/347 (42%), Gaps = 46/347 (13%)
Query: 44  NCYSPTLGVPSARRGIADYLNRDLPYKLSP-EDVYLTLGCSQAIEISLSVLARPGANILI 102
           N Y+   G P   + ++   ++ +   ++P  +V +T+G  +A+  ++      G  ++I
Sbjct: 71  NQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVII 130
Query: 103 PRPGYPLYE--IHAAGSNNNLEARHYDLLPEKR--------WEVDLDGVEALADENTVAI 152
             P +  YE  + AAG       R   L P K         W +D + +EAL +E T  I
Sbjct: 131 IEPFFDCYEPMVKAAGGI----PRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMI 186
Query: 153 VIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF-GSIVP 211
           +I  P NP G V     L+ +A   +   ++ ++DEVY H+ F    ++ +    G    
Sbjct: 187 IINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWER 246
Query: 212 VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPV-----TFIQA 266
            IT+GS  K + + GW++GW     P  +L+N   V   + C+   + P+        + 
Sbjct: 247 TITIGSAGKTFSLTGWKIGW--AYGPEALLKNLQMVH--QNCVYTCATPIQEAIAVGFET 302
Query: 267 AVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMV-------K 319
            + R+  ++ E +F  I G L    D     + E+     P  PQG  F++        K
Sbjct: 303 ELKRL--KSPECYFNSISGELMAKRDYMASFLAEVG--MNPTVPQGGYFMVADWSSLDSK 358
Query: 320 LNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEP 366
           ++++   D   D  F   + K          +VG++     AF +EP
Sbjct: 359 VDLTQETDARKDYRFTKWMTK----------SVGLQGIPPSAFYSEP 395

>pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine Aminotransferase From Saccharomyces Cerevisiae Length = 447

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 144/371 (38%), Gaps = 41/371 (11%)
Query: 37  ALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARP 96
           AL     N YSPT G PS    +    +     +L  E+V +T G ++ I   L  L   
Sbjct: 82  ALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLLNA 141
Query: 97  GANILIPRPGYPLY--EIHAAGSN---------NNLEARHYDLLPEKRWEVDLDGVEALA 145
           G  +++  P +  Y   I   G             L+ R+      + W +D +  E   
Sbjct: 142 GDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRN---TRGEEWTIDFEQFEKAI 198
Query: 146 DENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV 205
              T A++I  P NP G VF+ + L  +        +++I+DEVY HL F  + +  +  
Sbjct: 199 TSKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDS-FTRIAT 257
Query: 206 FGSIVPVITL--GSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTF 263
               +  +TL  GS    +   GWR+GW+++   N  L +       + C    + P   
Sbjct: 258 LSPEIGQLTLTVGSAGXSFAATGWRIGWVLSL--NAELLSYAAKAHTRICF---ASPSPL 312
Query: 264 IQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLN-V 322
            +A    I D     +F K+         I      E+        P+G  FV+V  + V
Sbjct: 313 QEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDELGLPY--TAPEGTYFVLVDFSKV 370
Query: 323 SMLEDI---------GDDLEFCLKLAKEESVIILPGRTVGMK-------NWLRIAFAAEP 366
            + ED          G D      L  E  V+ +P     +K       N LR A   + 
Sbjct: 371 KIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCKDD 430
Query: 367 ATLEDGLERIK 377
           A LE+ +ER+K
Sbjct: 431 AYLENAVERLK 441

>pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum Vulgare Length = 500

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 150/335 (44%), Gaps = 30/335 (8%)
Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGAN-ILIPR 104
           YS + G+   R  IA  +     +  + +D++LT G S  + + + +L R   + IL+P 
Sbjct: 130 YSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPI 189
Query: 105 PGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE------NTVAIVIINPG 158
           P YPLY    A     L    Y L     W ++   V+   ++      N  A+V+INPG
Sbjct: 190 PQYPLYSASIALHGGALVP--YYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPG 247
Query: 159 NPCGNVFSYQHLQKIARTARNLGIIVIADEVY------NHLAFGSTPYV--PMGVFGSIV 210
           NP G V + ++   I +  +N G++++ADEVY      ++  F S   +   +G     +
Sbjct: 248 NPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDL 307
Query: 211 PVITLGSISKRWIVP-GWRLGWL-VTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAV 268
           P+++  S+SK +    G R G+  +T     + +    + S+  C N     +  +    
Sbjct: 308 PLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIASVNLCSNITGQILASLVMNP 367
Query: 269 PRIVDETNEAFFAK---IIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVK------ 319
           P+  DE+  ++ A+   I+  L   A        ++  ITC  + +GAM+V  +      
Sbjct: 368 PKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCN-EAEGAMYVFPQICLPQK 426
Query: 320 -LNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG 353
            +  +   +   D  + L+L +   ++++PG   G
Sbjct: 427 AIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFG 461

>pdb|1YIZ|A Chain A, Aedes Aegypti Kynurenine Aminotrasferase Length = 429

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 148/347 (42%), Gaps = 46/347 (13%)
Query: 44  NCYSPTLGVPSARRGIADYLNRDLPYKLSP-EDVYLTLGCSQAIEISLSVLARPGANILI 102
           N Y+   G P   + ++   ++ +   ++P  +V +T+G  +A+  ++      G  ++I
Sbjct: 71  NQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVII 130
Query: 103 PRPGYPLYE--IHAAGSNNNLEARHYDLLPEKR--------WEVDLDGVEALADENTVAI 152
             P +  YE  + AAG       R   L P K         W +D + +EAL +E T  I
Sbjct: 131 IEPFFDCYEPMVKAAGGI----PRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMI 186
Query: 153 VIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF-GSIVP 211
           +I  P NP G V     L+ +A   +   ++ ++DEVY H+ F    ++ +    G    
Sbjct: 187 IINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWER 246
Query: 212 VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPV-----TFIQA 266
            IT+GS    + + GW++GW     P  +L+N   V   + C+   + P+        + 
Sbjct: 247 TITIGSAGXTFSLTGWKIGW--AYGPEALLKNLQMVH--QNCVYTCATPIQEAIAVGFET 302
Query: 267 AVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMV-------K 319
            + R+  ++ E +F  I G L    D     + E+     P  PQG  F++        K
Sbjct: 303 ELKRL--KSPECYFNSISGELMAKRDYMASFLAEVG--MNPTVPQGGYFMVADWSSLDSK 358
Query: 320 LNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEP 366
           ++++   D   D  F   + K          +VG++     AF +EP
Sbjct: 359 VDLTQETDARKDYRFTKWMTK----------SVGLQGIPPSAFYSEP 395

>pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698) From Thermotoga Maritima At 2.50 A Resolution Length = 409

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 125/293 (42%), Gaps = 32/293 (10%)
Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRP 105
           YS + G+   R   A Y  R     + PE+V +T G S+AI  S +V+A PG  IL+  P
Sbjct: 75  YSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEP 134
Query: 106 GYPLYEIHAAGSNNNLEARHYDLLP-EKRWEVDL---DGVEALADENTVAIVIINPGNPC 161
            Y  Y   A  +          L+P  +R E        +E+  +E T  IV+ NP NP 
Sbjct: 135 FYANYNAFAKIAG-------VKLIPVTRRXEEGFAIPQNLESFINERTKGIVLSNPCNPT 187
Query: 162 GNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIV-----PVITLG 216
           G V+     + +   A   G+ +I DEVY+ + F        G F S +      V+ + 
Sbjct: 188 GVVYGKDEXRYLVEIAERHGLFLIVDEVYSEIVF-------RGEFASALSIESDKVVVID 240
Query: 217 SISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETN 276
           S+S ++   G R+G L+T       +N   +            P    Q     +++  +
Sbjct: 241 SVSXKFSACGARVGCLIT-------RNEELISHAXKLAQGRLAPPLLEQIGSVGLLN-LD 292
Query: 277 EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIG 329
           ++FF  +    +E  +   ++++E   +    KP GA ++  +L V   E+  
Sbjct: 293 DSFFDFVRETYRERVETVLKKLEE-HGLKRFTKPSGAFYITAELPVEDAEEFA 344

>pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia Coli Identify A Methionine Aminotransferase Function. Length = 386

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/361 (23%), Positives = 147/361 (40%), Gaps = 49/361 (13%)
Query: 39  RTAHY-----NCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIEISLSV 92
           R AH+     N Y+P  GV + R  IA    R   Y+   + D+ +T G ++A+  +++ 
Sbjct: 51  RLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITA 110
Query: 93  LARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAI 152
           L R G  ++   P Y  Y    A S   ++      L    + VD     AL  E T  +
Sbjct: 111 LVRNGDEVICFDPSYDSYAPAIALSGGIVKRM---ALQPPHFRVDWQEFAALLSERTRLV 167
Query: 153 VIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVP- 211
           ++  P NP   V+       + +      I VI+DEVY H+ F    +  +     +   
Sbjct: 168 ILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRER 227
Query: 212 VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTF-----IQA 266
            + + S  K + + GW++G+ V   P            I   +      +TF      Q 
Sbjct: 228 AVAVSSFGKTYHMTGWKVGYCVAPAP------------ISAEIRKVHQYLTFSVNTPAQL 275
Query: 267 AVPRIVDETNEAFFAKIIGLLKETADICYERIKE-----IPCITCPVKPQGAMFVMVKLN 321
           A+  ++    E + A +    ++  DI    + E     +PC       +G  F++V  +
Sbjct: 276 ALADMLRAEPEHYLA-LPDFYRQKRDILVNALNESRLEILPC-------EGTYFLLVDYS 327
Query: 322 -VSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNW----LRIAFAAEPATLEDGLERI 376
            VS L    DD+EFC  L +E  V  +P        +    +R+ FA + +TL    ER+
Sbjct: 328 AVSTL----DDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERL 383
Query: 377 K 377
           +
Sbjct: 384 R 384

>pdb|2ZC0|A Chain A, Crystal Structure Of An Archaeal Alanine:glyoxylate Aminotransferase Length = 407

Iteration: 1
 Score = 81.6 bits (200), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 145/339 (42%), Gaps = 45/339 (13%)
Query: 45  CYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPR 104
            Y+P  G+P  R  +A +L +    ++SPE++ +T+G + A+++   VL  PG  ++   
Sbjct: 70  MYTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITEN 129
Query: 105 PGY--PLYEIHAAGSN------NNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIIN 156
           P Y   L      G+       +N +    DLL EK  E+   G      +    I  I 
Sbjct: 130 PSYINTLLAFEQLGAKIEGVPVDN-DGMRVDLLEEKIKELKAKG------QKVKLIYTIP 182
Query: 157 PG-NPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITL 215
            G NP G   S +  + +   A    +++I D  YN + +     VP+    +   VI  
Sbjct: 183 TGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVA 242
Query: 216 GSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIV--D 273
           G++SK  +  G+R+GW++              + +K  L     P+ F   A+ + +  +
Sbjct: 243 GTLSK-VLGTGFRIGWIIAEG-----------EILKKVL-MQKQPIDFCAPAISQYIALE 289
Query: 274 ETNEAFFAK--IIGLL---KETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDI 328
                +F K  + G L   KE  DI  + ++         KP   MFVM       L + 
Sbjct: 290 YLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMF-----FLPEG 344
Query: 329 GDDLEFCLKLAKEESVIILPGRTV----GMKNWLRIAFA 363
            D + F  +L + E V+++PG+        KN +R+ F+
Sbjct: 345 ADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFS 383

>pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I In Pmp Form Length = 422

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/384 (21%), Positives = 160/384 (41%), Gaps = 45/384 (11%)
Query: 32  DAVVDALRTA-----HYNCYSPTLGVPSARRGIADYLNRDLPYKLSP-EDVYLTLGCSQA 85
           D  V+A + A       N Y+ T G P   + +A +    L  ++ P  +V +T+G   A
Sbjct: 44  DFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGA 103
Query: 86  IEISLSVLARPGANILIPRPGYPLYE---IHAAGSNNNLEAR-----HYDLLPEKRWEVD 137
           +  +   L   G  ++I  P +  YE   + A G    +  +     + +L     W++D
Sbjct: 104 LFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLD 163
Query: 138 LDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS 197
              +       T A+V+  P NP G VFS + L+ +A   +   ++ I DEVY  + +  
Sbjct: 164 PMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDG 223
Query: 198 TPYVPMGVF-GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNA 256
             ++ +    G     +T+GS  K +   GW++GW++   P+ I+++   V       N+
Sbjct: 224 HQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVL--GPDHIMKHLRTVHQ-----NS 276
Query: 257 ASHPVTFIQAAVPRIVDETN------EAFFAKIIGLLKETADICYERIKEIPCITCPVKP 310
             H  T  QAAV    +          ++F +    ++   D     ++ +     P+ P
Sbjct: 277 VFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGL--KPLIP 334
Query: 311 QGAMFVMVKL--------NVSMLEDIGDDLEFCLKLAKEESVIILP-------GRTVGMK 355
           QG+ F++  +        ++    D   D  F   + K + ++ +P              
Sbjct: 335 QGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFD 394
Query: 356 NWLRIAFAAEPATLEDGLERIKAF 379
           +++R  F  + ATL+   E+++ +
Sbjct: 395 HYIRFCFVKDEATLQAMDEKLRKW 418

>pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With Glycerol Length = 422

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/384 (20%), Positives = 159/384 (41%), Gaps = 45/384 (11%)
Query: 32  DAVVDALRTA-----HYNCYSPTLGVPSARRGIADYLNRDLPYKLSP-EDVYLTLGCSQA 85
           D  V+A + A       N Y+ T G P   + +A +    L  ++ P  +V +T+G   A
Sbjct: 44  DFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGA 103
Query: 86  IEISLSVLARPGANILIPRPGYPLYE---IHAAGSNNNLEAR-----HYDLLPEKRWEVD 137
           +  +   L   G  ++I  P +  YE   + A G    +  +     + +L     W++D
Sbjct: 104 LFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLD 163
Query: 138 LDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS 197
              +       T A+V+  P NP G VFS + L+ +A   +   ++ I DEVY  + +  
Sbjct: 164 PMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDG 223
Query: 198 TPYVPMGVF-GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNA 256
             ++ +    G     +T+GS    +   GW++GW++   P+ I+++   V       N+
Sbjct: 224 HQHISIASLPGMWERTLTIGSAGXTFSATGWKVGWVL--GPDHIMKHLRTVHQ-----NS 276
Query: 257 ASHPVTFIQAAVPRIVDETN------EAFFAKIIGLLKETADICYERIKEIPCITCPVKP 310
             H  T  QAAV    +          ++F +    ++   D     ++ +     P+ P
Sbjct: 277 VFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGL--KPIIP 334
Query: 311 QGAMFVMVKL--------NVSMLEDIGDDLEFCLKLAKEESVIILP-------GRTVGMK 355
           QG+ F++  +        ++    D   D  F   + K + ++ +P              
Sbjct: 335 QGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFD 394
Query: 356 NWLRIAFAAEPATLEDGLERIKAF 379
           +++R  F  + ATL+   E+++ +
Sbjct: 395 HYIRFCFVKDEATLQAMDEKLRKW 418

>pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I Length = 422

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 80/384 (20%), Positives = 159/384 (41%), Gaps = 45/384 (11%)
Query: 32  DAVVDALRTA-----HYNCYSPTLGVPSARRGIADYLNRDLPYKLSP-EDVYLTLGCSQA 85
           D  V+A + A       N Y+ T G P   + +A +    L  ++ P  +V +T+G   A
Sbjct: 44  DFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGA 103
Query: 86  IEISLSVLARPGANILIPRPGYPLYE---IHAAGSNNNLEAR-----HYDLLPEKRWEVD 137
           +  +   L   G  ++I  P +  YE   + A G    +  +     + +L     W++D
Sbjct: 104 LFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLD 163
Query: 138 LDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS 197
              +       T A+V+  P NP G VFS + L+ +A   +   ++ I DEVY  + +  
Sbjct: 164 PMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDG 223
Query: 198 TPYVPMGVF-GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNA 256
             ++ +    G     +T+GS    +   GW++GW++   P+ I+++   V       N+
Sbjct: 224 HQHISIASLPGMWERTLTIGSAGXTFSATGWKVGWVL--GPDHIMKHLRTVHQ-----NS 276
Query: 257 ASHPVTFIQAAVPRIVDETN------EAFFAKIIGLLKETADICYERIKEIPCITCPVKP 310
             H  T  QAAV    +          ++F +    ++   D     ++ +     P+ P
Sbjct: 277 VFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGL--KPLIP 334
Query: 311 QGAMFVMVKL--------NVSMLEDIGDDLEFCLKLAKEESVIILP-------GRTVGMK 355
           QG+ F++  +        ++    D   D  F   + K + ++ +P              
Sbjct: 335 QGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFD 394
Query: 356 NWLRIAFAAEPATLEDGLERIKAF 379
           +++R  F  + ATL+   E+++ +
Sbjct: 395 HYIRFCFVKDEATLQAMDEKLRKW 418

>pdb|1WST|A Chain A, Crystal Structure Of Multiple Substrate Aminotransferase (Msat) From Thermococcus Profundus Length = 417

Iteration: 1
 Score = 77.8 bits (190), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 145/359 (40%), Gaps = 41/359 (11%)
Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRP 105
           Y  T G    R  +A ++ +     +S  ++    G  QA+++   V   PG  I++  P
Sbjct: 79  YGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAP 138
Query: 106 GYPLYEIHAAGSNNNLEARHYD------LLPEKRWEVDLDGVEALADEN-----TVAIVI 154
            Y L  I A         ++YD       L +K   VDL   +            +   +
Sbjct: 139 TY-LAAIQA--------FKYYDPEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTV 189
Query: 155 INPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVIT 214
               NP G   S    +K+   A     +++ D  Y+ L +   P  P+  F     VI 
Sbjct: 190 STFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIY 249
Query: 215 LGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDE 274
           LG+ SK  + PG+R+GW V + P+ I +      SI  C N      TF QA   + V+ 
Sbjct: 250 LGTFSK-ILAPGFRIGW-VAAHPHLIRKMEIAKQSIDLCTN------TFGQAIAWKYVEN 301
Query: 275 TN-EAFFAKIIGLLKETADICYERIKE-IPCITCPVKPQGAMFVMVKLNVSMLEDIGDDL 332
              +    KII   K   D   E ++E +P      KP+G MFV V L        G D 
Sbjct: 302 GYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTKPEGGMFVRVTLPE------GIDT 355
Query: 333 EFCLKLAKEESVIILPGRTVGM----KNWLRIAFAAEP-ATLEDGLERIKAFCQRHAKK 386
           +  ++ A  + V  +PG    +    KN +R+ F   P  T+ +G+ R+    +   K+
Sbjct: 356 KLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETIKEEMKR 414

>pdb|2O0R|A Chain A, The Three-Dimensional Structure Of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis Length = 411

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 142/332 (42%), Gaps = 44/332 (13%)
Query: 75  DVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYE--IHAAGSNNNLEARHYDLLPEK 132
           +V +T+G ++AI  ++  L  PG+ +L+  P Y  Y   +  AG++         L+P+ 
Sbjct: 88  EVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVT----VPLVPDG 143
Query: 133 R-WEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYN 191
           R + +D D +       T A++I +P NP G V S   L  IA  A    ++VI DEVY 
Sbjct: 144 RGFALDADALRRAVTPRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYE 203
Query: 192 HLAFGSTPYVPMGVFGSIVP-VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSI 250
           HL F    ++P+  F  +    IT+ S +  +   GW++GW             G  + I
Sbjct: 204 HLVFDHARHLPLAGFDGMAERTITISSAAXMFNCTGWKIGW-----------ACGPAELI 252
Query: 251 KGCLNAASHPVTFI-----QAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCIT 305
            G + AA   ++++     Q AV   +D T +A+ A +   L+   D     + E   I 
Sbjct: 253 AG-VRAAKQYLSYVGGAPFQPAVALALD-TEDAWVAALRNSLRARRDRLAAGLTE---IG 307
Query: 306 CPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILP---------GRTVGMKN 356
             V      + +      +  D  D  EFC  L ++  V  +P         G+     +
Sbjct: 308 FAVHDSYGTYFLCADPRPLGYD--DSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQAD 365
Query: 357 -W---LRIAFAAEPATLEDGLERIKAFCQRHA 384
            W   +R  F     TL++ + R+    +R A
Sbjct: 366 VWNHLVRFTFCKRDDTLDEAIRRLSVLAERPA 397

>pdb|3E2Z|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii In Complex With Kynurenine Length = 410

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 89/388 (22%), Positives = 164/388 (42%), Gaps = 37/388 (9%)
Query: 20  GVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSP-EDVYL 78
           G   +S  +  ++ +  A    + N Y+   G P+  + ++    +    ++ P E++ +
Sbjct: 31  GFPDISPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILV 90
Query: 79  TLGCSQAIEISLSVLARPGANILIPRPGYPLYE--IHAAGSNN---NLEARHYDLLP--E 131
            +G   ++  S+  L  PG  ++I  P Y  YE  +  AG+      L ++  D +    
Sbjct: 91  AVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTS 150
Query: 132 KRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYN 191
             W  D   +E+     T AI++  P NP G V++ Q LQ IA        + I+DEVY 
Sbjct: 151 SDWTFDPRELESKFSSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYE 210
Query: 192 HLAFGSTPYVPMGVF-GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV--D 248
            L +    +V +    G     IT+GS  K + V GW+LGW +   P  ++++   V  +
Sbjct: 211 WLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSI--GPAHLIKHLQTVQQN 268
Query: 249 SIKGC---LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCIT 305
           S   C   L AA     +I   + R+ D   E +F  +   L+   D     +  +    
Sbjct: 269 SFYTCATPLQAALAEAFWID--IKRMDDP--ECYFNSLPKELEVKRDRMVRLLNSVGLK- 323
Query: 306 CPVKPQGAMFVMVKLNVSMLEDIGD-------DLEFCLKLAKEESVIILPGRTV------ 352
            P+ P G  F++  ++ S+  D+ D       D +F   + K + +  +P          
Sbjct: 324 -PIVPDGGYFIIADVS-SLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSK 381
Query: 353 -GMKNWLRIAFAAEPATLEDGLERIKAF 379
              +  +R  F  + +TL+   E  +A+
Sbjct: 382 PHFEKLVRFCFIKKDSTLDAAEEIFRAW 409

>pdb|3E2F|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii, Plp-Bound Form Length = 410

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 163/388 (42%), Gaps = 37/388 (9%)
Query: 20  GVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSP-EDVYL 78
           G   +S  +  ++ +  A    + N Y+   G P+  + ++    +    ++ P E++ +
Sbjct: 31  GFPDISPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILV 90
Query: 79  TLGCSQAIEISLSVLARPGANILIPRPGYPLYE--IHAAGSNN---NLEARHYDLLP--E 131
            +G   ++  S+  L  PG  ++I  P Y  YE  +  AG+      L ++  D +    
Sbjct: 91  AVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTS 150
Query: 132 KRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYN 191
             W  D   +E+     T AI++  P NP G V++ Q LQ IA        + I+DEVY 
Sbjct: 151 SDWTFDPRELESKFSSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYE 210
Query: 192 HLAFGSTPYVPMGVF-GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV--D 248
            L +    +V +    G     IT+GS    + V GW+LGW +   P  ++++   V  +
Sbjct: 211 WLVYTGHTHVKIATLPGMWERTITIGSAGXTFSVTGWKLGWSI--GPAHLIKHLQTVQQN 268
Query: 249 SIKGC---LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCIT 305
           S   C   L AA     +I   + R+ D   E +F  +   L+   D     +  +    
Sbjct: 269 SFYTCATPLQAALAEAFWID--IKRMDDP--ECYFNSLPKELEVKRDRMVRLLNSVGLK- 323
Query: 306 CPVKPQGAMFVMVKLNVSMLEDIGD-------DLEFCLKLAKEESVIILPGRTV------ 352
            P+ P G  F++  ++ S+  D+ D       D +F   + K + +  +P          
Sbjct: 324 -PIVPDGGYFIIADVS-SLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSK 381
Query: 353 -GMKNWLRIAFAAEPATLEDGLERIKAF 379
              +  +R  F  + +TL+   E  +A+
Sbjct: 382 PHFEKLVRFCFIKKDSTLDAAEEIFRAW 409

>pdb|2EGY|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate Aminotransferase (Substrate Free Form), From Thermus Thermophilus Hb27 Length = 397

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 137/328 (41%), Gaps = 35/328 (10%)
Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRP 105
           YSPT G    R  +A+++       + PE+V +T G  QA+++   V    G+ +L+  P
Sbjct: 70  YSPTEGYAPLRAFVAEWIG------VRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAP 123
Query: 106 GYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPG--NPCGN 163
            Y       A     L+   +  +P      DLD +E +        + + P   NP G 
Sbjct: 124 SY-----MGAIQAFRLQGPRFLTVPAGEEGPDLDALEEVLKRERPRFLYLIPSFQNPTGG 178
Query: 164 VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGST---PYVPMGVFGSIVPVITLGSISK 220
           +      +++ +     G++V+ D+ Y  L FG         +        VI LGS SK
Sbjct: 179 LTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSK 238
Query: 221 RWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFF 280
             + PG R+ + V + P  + +    V + +G   A  H     Q  V  ++ E      
Sbjct: 239 -VLSPGLRVAFAV-AHPEALQK---LVQAKQG---ADLHTPMLNQMLVHELLKEGFSERL 290
Query: 281 AKIIGLLKETADICYERI-KEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLA 339
            ++  + +E A      + +E+P      +P+G MFV ++L        G   E   + A
Sbjct: 291 ERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMEL------PKGLSAEGLFRRA 344
Query: 340 KEESVIILPGRTV----GMKNWLRIAFA 363
            EE+V  +PG       G +N LR+++A
Sbjct: 345 LEENVAFVPGGPFFANGGGENTLRLSYA 372

>pdb|3H14|A Chain A, Crystal Structure Of A Putative Aminotransferase From Silicibacter Pomeroyi Length = 391

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 141/356 (39%), Gaps = 51/356 (14%)
Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRP 105
           Y+  LG+P+ R+ IA          L P  V +T G S    ++ + L   G  + I  P
Sbjct: 64  YTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAP 123
Query: 106 GYPLYE--IHAAGSNNNLEARHYDLLPEKRWE---VDLDGVEALADENTVAIVIINPGNP 160
           GYP Y   + A G    L        PE R +    D  G+      +   + + +P NP
Sbjct: 124 GYPSYRQILRALG----LVPVDLPTAPENRLQPVPADFAGL------DLAGLXVASPANP 173
Query: 161 CGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISK 220
            G    +     +   A+  G   I+DE+Y+ + + +     + +         + S SK
Sbjct: 174 TGTXLDHAAXGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDE---CYVINSFSK 230
Query: 221 RWIVPGWRLGWLVTSDPN-----GILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDET 275
            +   GWR+GW V  +        I QN  F+     C   AS         V  +    
Sbjct: 231 YFSXTGWRVGWXVVPEDQVRVVERIAQNX-FI-----CAPHASQ--------VAALAALD 276
Query: 276 NEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFC 335
            +A     + + K    +  ER+ +    T    P GA +V    +VS L D  D   F 
Sbjct: 277 CDAELQANLDVYKANRKLXLERLPKA-GFTRIAPPDGAFYVYA--DVSDLTD--DSRAFA 331
Query: 336 LKLAKEESVIILPG------RTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAK 385
            ++ ++  V + PG      R  G    LR ++A   A +E+GL+R++AF Q   +
Sbjct: 332 AEILEKAGVAVTPGLDFDPERGAGT---LRFSYARATADIEEGLDRLEAFXQARGE 384

>pdb|3AOV|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine Aminotransferase In Complex With Plp Length = 448

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 142/357 (39%), Gaps = 40/357 (11%)
Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIEISLSVLARPGANILIPR 104
           Y  T G    R  +  +L +   Y +S + D+ +T G  QA+++   V   PG  +++  
Sbjct: 114 YGTTKGFTPLRETLMKWLGKR--YGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEA 171
Query: 105 PGY-------PLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINP 157
           P Y         YE        + E    ++L EK  E+   G         V +V   P
Sbjct: 172 PTYLAALQAFNFYEPQYIQIPLDDEGMKVEILEEKLKELKSQG-------KKVKVVYTVP 224
Query: 158 G--NPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITL 215
              NP G   +    + +   A     IV+ D+ Y  L +   P   +    +   VI L
Sbjct: 225 TFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYL 284
Query: 216 GSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDET 275
           G+ SK  + PG+R+GW+V  DP  I +      S   C N       F Q    R VD  
Sbjct: 285 GTFSK-ILAPGFRIGWMV-GDPGIIRKMEIAKQSTDLCTN------VFGQVVAWRYVDGG 336
Query: 276 N-EAFFAKIIGLLKETADICYERIKE-IPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLE 333
             E    +I    K   D   E ++E +P      KP+G MF+ V L        G D +
Sbjct: 337 YLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTL------PDGIDSK 390
Query: 334 FCLKLAKEESVIILPGRTV----GMKNWLRIAFA-AEPATLEDGLERIKAFCQRHAK 385
             L+ A ++ V  +PG        +KN +R+ F   +   + +G++R+    +   K
Sbjct: 391 KMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRLAETIKEELK 447

>pdb|1X0M|A Chain A, A Human Kynurenine Aminotransferase Ii Homologue From Pyrococcus Horikoshii Ot3 Length = 403

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 142/357 (39%), Gaps = 40/357 (11%)
Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIEISLSVLARPGANILIPR 104
           Y  T G    R  +  +L +   Y +S + D+ +T G  QA+++   V   PG  +++  
Sbjct: 69  YGTTKGFTPLRETLMKWLGKR--YGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEA 126
Query: 105 PGY-------PLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINP 157
           P Y         YE        + E    ++L EK  E+   G         V +V   P
Sbjct: 127 PTYLAALQAFNFYEPQYIQIPLDDEGMKVEILEEKLKELKSQG-------KKVKVVYTVP 179
Query: 158 G--NPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITL 215
              NP G   +    + +   A     IV+ D+ Y  L +   P   +    +   VI L
Sbjct: 180 TFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYL 239
Query: 216 GSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDET 275
           G+ SK  + PG+R+GW+V  DP  I +      S   C N       F Q    R VD  
Sbjct: 240 GTFSK-ILAPGFRIGWMV-GDPGIIRKMEIAKQSTDLCTN------VFGQVVAWRYVDGG 291
Query: 276 N-EAFFAKIIGLLKETADICYERIKE-IPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLE 333
             E    +I    K   D   E ++E +P      KP+G MF+ V L        G D +
Sbjct: 292 YLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLPD------GIDSK 345
Query: 334 FCLKLAKEESVIILPGRTV----GMKNWLRIAFA-AEPATLEDGLERIKAFCQRHAK 385
             L+ A ++ V  +PG        +KN +R+ F   +   + +G++R+    +   K
Sbjct: 346 KMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRLAETIKEELK 402

>pdb|3B1C|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus Anginosus: Internal Aldimine Form Length = 392

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 142/345 (41%), Gaps = 34/345 (9%)
Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRP 105
           Y  T       + + D+   +  Y    ED+    G   AI I++    + G  +LI  P
Sbjct: 62  YGYTYASDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFTKEGEAVLINSP 121
Query: 106 GYPLYEIHAAGSNNNLEARHYDLLPEKR--WEVDLDGVEALADENTVAIVII-NPGNPCG 162
            YP +      +N  L +   + L E+   +++D + +E    EN V + ++ NP NP G
Sbjct: 122 VYPPFARSVRLNNRKLVS---NSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGG 178
Query: 163 NVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVP-----VITLGS 217
            V+  + L++I    +   +I+++DE++  L      +V    F ++ P      + L S
Sbjct: 179 RVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVS---FNTVSPDFKDFALVLSS 235
Query: 218 ISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIK-GCLNAASHPVTFIQAAVPRIVDETN 276
            +K + + G       T +   I++N       K   L    H V+ +            
Sbjct: 236 ATKTFNIAG-------TKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG 288
Query: 277 EAFFAKIIGLLKETADICYERI-KEIPCITCPVKPQGAMFVMVKLNVSMLEDIG--DDLE 333
           + +   +  +L+E      E   +E P +   +KPQG   + +  +     D G  DD  
Sbjct: 289 KPWLVALKAVLEENIQFAVEYFAQEAPRLKV-MKPQGTYLIWLDFS-----DYGLTDDAL 342
Query: 334 FCLKLAKEESVIILPGRTVGMKNWL--RIAFAAEPATLEDGLERI 376
           F L L  +  VI+  G   G +  L  R+  AA  + +E+  +RI
Sbjct: 343 FTL-LHDQAKVILNRGSDYGSEGELHARLNIAAPKSLVEEICKRI 386

>pdb|1YNU|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L-Vinylglycine Length = 473

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 150/371 (40%), Gaps = 71/371 (19%)
Query: 51  GVPSARRGIADYLN--RDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYP 108
           G+P+ ++ + D++   R       P  + LT G + A E  +  LA PG  +LIP P YP
Sbjct: 87  GLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYP 146
Query: 109 LYE-------------IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTV---AI 152
            ++             IH   SN       + +      E  L+     A++  +    +
Sbjct: 147 GFDRDLKWRTGVEIVPIHCTSSNG------FQIT-----ETALEEAYQEAEKRNLRVKGV 195
Query: 153 VIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGS--- 208
           ++ NP NP G   +   L  +     + GI +I+DE+Y+  AF S  ++  M V      
Sbjct: 196 LVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNC 255
Query: 209 ------IVPVITLGSISKRWIVPGWRLGWLVTSDPNGI-----LQNSGFVDS-----IKG 252
                    V  + S+SK   +PG+R+G + ++D   +     + + G V S     +  
Sbjct: 256 DENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSA 315
Query: 253 CLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQG 312
            L+       +I     R+          K++  L+++             I+C +    
Sbjct: 316 MLSDKKLTKNYIAENHKRLKQRQK-----KLVSGLQKSG------------ISC-LNGNA 357
Query: 313 AMFVMVKLNVSMLEDIGD-DLEFCLKLAKEESVIILPGRTVGMKN--WLRIAFAAEPA-T 368
            +F  V +   +  +  + ++E   K+  E  + I PG +       W R+ FA  P  T
Sbjct: 358 GLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERT 417
Query: 369 LEDGLERIKAF 379
           L+  ++R+KAF
Sbjct: 418 LDLAMQRLKAF 428

>pdb|1M7Y|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L- Aminoethoxyvinylglycine Length = 435

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 150/371 (40%), Gaps = 71/371 (19%)
Query: 51  GVPSARRGIADYLN--RDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYP 108
           G+P+ ++ + D++   R       P  + LT G + A E  +  LA PG  +LIP P YP
Sbjct: 87  GLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYP 146
Query: 109 LYE-------------IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTV---AI 152
            ++             IH   SN       + +      E  L+     A++  +    +
Sbjct: 147 GFDRDLKWRTGVEIVPIHCTSSNG------FQIT-----ETALEEAYQEAEKRNLRVKGV 195
Query: 153 VIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGS--- 208
           ++ NP NP G   +   L  +     + GI +I+DE+Y+  AF S  ++  M V      
Sbjct: 196 LVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNC 255
Query: 209 ------IVPVITLGSISKRWIVPGWRLGWLVTSDPNGI-----LQNSGFVDS-----IKG 252
                    V  + S+SK   +PG+R+G + ++D   +     + + G V S     +  
Sbjct: 256 DENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSA 315
Query: 253 CLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQG 312
            L+       +I     R+          K++  L+++             I+C +    
Sbjct: 316 MLSDKKLTKNYIAENHKRLKQRQK-----KLVSGLQKSG------------ISC-LNGNA 357
Query: 313 AMFVMVKLNVSMLEDIGD-DLEFCLKLAKEESVIILPGRTVGMKN--WLRIAFAAEPA-T 368
            +F  V +   +  +  + ++E   K+  E  + I PG +       W R+ FA  P  T
Sbjct: 358 GLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERT 417
Query: 369 LEDGLERIKAF 379
           L+  ++R+KAF
Sbjct: 418 LDLAMQRLKAF 428

>pdb|1B8G|A Chain A, 1-aminocyclopropane-1-carboxylate Synthase Length = 429

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 150/371 (40%), Gaps = 71/371 (19%)
Query: 51  GVPSARRGIADYLN--RDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYP 108
           G+P+ ++ + D++   R       P  + LT G + A E  +  LA PG  +LIP P YP
Sbjct: 85  GLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYP 144
Query: 109 LYE-------------IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTV---AI 152
            ++             IH   SN       + +      E  L+     A++  +    +
Sbjct: 145 GFDRDLKWRTGVEIVPIHCTSSNG------FQIT-----ETALEEAYQEAEKRNLRVKGV 193
Query: 153 VIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGS--- 208
           ++ NP NP G   +   L  +     + GI +I+DE+Y+  AF S  ++  M V      
Sbjct: 194 LVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNC 253
Query: 209 ------IVPVITLGSISKRWIVPGWRLGWLVTSDPNGI-----LQNSGFVDS-----IKG 252
                    V  + S+SK   +PG+R+G + ++D   +     + + G V S     +  
Sbjct: 254 DENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSA 313
Query: 253 CLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQG 312
            L+       +I     R+          K++  L+++             I+C +    
Sbjct: 314 MLSDKKLTKNYIAENHKRLKQRQK-----KLVSGLQKSG------------ISC-LNGNA 355
Query: 313 AMFVMVKLNVSMLEDIGD-DLEFCLKLAKEESVIILPGRTVGMKN--WLRIAFAAEPA-T 368
            +F  V +   +  +  + ++E   K+  E  + I PG +       W R+ FA  P  T
Sbjct: 356 GLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERT 415
Query: 369 LEDGLERIKAF 379
           L+  ++R+KAF
Sbjct: 416 LDLAMQRLKAF 426

>pdb|3JTX|A Chain A, Crystal Structure Of Aminotransferase (np_283882.1) From Neisseria Meningitidis Z2491 At 1.91 A Resolution Length = 396

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 153/375 (40%), Gaps = 63/375 (16%)
Query: 34  VVDALRTAHYNC--YSPTLGVPSARRGIADYLNR--DLPYKLSPEDVYLTLGCSQAIEIS 89
           + DAL  + +    Y  T G+P  R+  A++L R  D     +  ++   LG  +A+   
Sbjct: 48  ITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSF 107
Query: 90  LSVLARPGAN-----ILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEAL 144
           +  +  P ++     I+ P P Y +YE         +   H+   P   +  D   +   
Sbjct: 108 VQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEI---HFANCPAPSFNPDWRSISEE 164
Query: 145 ADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMG 204
             + T  + + +P NP G+V      +++       G I+ +DE Y+ + F      P+G
Sbjct: 165 VWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNK--PLG 222
Query: 205 VFGSIV-------PVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAA 257
              +          ++   S+S R  VPG R G+ V  D   +L+N     +  G  +A 
Sbjct: 223 CLQAAAQLGRSRQKLLXFTSLSXRSNVPGLRSGF-VAGDAE-LLKNFLLYRTYHG--SAX 278
Query: 258 SHPVTFIQAAVPRIVDETN--------EAFFAKIIGLLKETADICYERIKEIPCITCPVK 309
           S PV   +A++    DE +        +  F ++I +L++  D+                
Sbjct: 279 SIPVQ--RASIAAWDDEQHVIDNRRLYQEKFERVIPILQQVFDVKL-------------- 322
Query: 310 PQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--------KNWLRIA 361
           P  + ++ +K+        GDDL F   L ++ ++ +LPGR +          + ++RIA
Sbjct: 323 PDASFYIWLKV------PDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIA 376
Query: 362 FAAEPATLEDGLERI 376
             A+ AT     E I
Sbjct: 377 LVADVATCVKAAEDI 391

>pdb|3L8A|A Chain A, Crystal Structure Of Metc From Streptococcus Mutans Length = 421

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 142/345 (41%), Gaps = 34/345 (9%)
Query: 43  YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILI 102
           YN ++  L      + + D+  ++  Y +  ED+    G   AI I+L   +  G  +LI
Sbjct: 94  YNYFNDDL-----YQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFSEKGDAVLI 148
Query: 103 PRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVII-NPGNPC 161
             P Y  +      +++ L      ++   R+E+D + +E    +N V I ++ +P NP 
Sbjct: 149 NSPVYYPFARTIRLNDHRLVENSLQII-NGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPG 207
Query: 162 GNVFSYQHLQKIARTARNLGIIVIADEVYNHLA-FGSTPYVPMGVFGSIVP-VITLGSIS 219
           G V+    L KIA   +  G+I+++DE++  LA FG+T +    +  S     I L S +
Sbjct: 208 GRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSAT 267
Query: 220 KRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAF 279
           K + + G       T +   I+QN       +    A +      Q  VP +     +A 
Sbjct: 268 KTFNIAG-------TKNSFAIIQNESLRRKFQYRQLANN------QHEVPTVGMIATQAA 314
Query: 280 FAKIIGLLKETADICYERIK------EIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLE 333
           F      L+E   +    IK      E       ++P+G   V +  +   +       +
Sbjct: 315 FQYGKPWLEELKTVIEGNIKLVIKELEAKTKIKVMEPEGTYLVWLDFSAYAIAQP----Q 370
Query: 334 FCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERI 376
              KL  E  V++  G   G   K + R+  A    T+++ L RI
Sbjct: 371 LSEKLQNEAKVVLNDGAHFGKEGKYFARLNVATPKNTVQEALSRI 415

>pdb|1IAX|A Chain A, Crystal Structure Of Acc Synthase Complexed With Plp Length = 428

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 78/363 (21%), Positives = 142/363 (39%), Gaps = 57/363 (15%)
Query: 51  GVPSARRGIADYL--NRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYP 108
           G+P  R+ IA ++   R    +  PE V +  G + A E  +  LA PG   L+P P YP
Sbjct: 84  GLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYP 143
Query: 109 LYE-------------IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVII 155
            +              IH   SNN      + +  +   E   +  +  ++     +++ 
Sbjct: 144 AFNRDLRWRTGVQLIPIHCESSNN------FKITSKAVKEAYENAQK--SNIKVKGLILT 195
Query: 156 NPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMG--------VFG 207
           NP NP G       L+ +        I ++ DE+Y    F +  +V +          + 
Sbjct: 196 NPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYC 255
Query: 208 SIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL-NAASHPVTFIQA 266
           +   V  + S+SK   +PG+R+G + +           F D +  C    +S  +   Q 
Sbjct: 256 NKDLVHIVYSLSKDMGLPGFRVGIIYS-----------FNDDVVNCARKMSSFGLVSTQT 304
Query: 267 AVPRIVDETNEAFFAKIIGLLKETADICYERIK------EIPCITCPVKPQGAMFVMVKL 320
                   ++E F   +   L+E+A    +R K      E+  I C +K    +F  + L
Sbjct: 305 QYFLAAMLSDEKF---VDNFLRESAMRLGKRHKHFTNGLEVVGIKC-LKNNAGLFCWMDL 360
Query: 321 NVSMLEDIGD-DLEFCLKLAKEESVIILPGRTVGMKN--WLRIAFA-AEPATLEDGLERI 376
              + E   D ++     +  +  + + PG +   +   W R+ FA  +  T++  L RI
Sbjct: 361 RPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARI 420
Query: 377 KAF 379
           + F
Sbjct: 421 RRF 423

>pdb|4GE7|A Chain A, Kynurenine Aminotransferase Ii Inhibitors Length = 439

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 143/349 (40%), Gaps = 48/349 (13%)
Query: 46  YSPTLGVP---SARRGIADYLNRDLPYKLSPE----DVYLTLGCSQAIEISLSVLARPGA 98
           YSP+ G+P   S  + +   L+        P     D+ +T G  Q +     ++  PG 
Sbjct: 74  YSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLXKVFEMIINPGD 133
Query: 99  NILIPRPGYP--LYEIHAAGSNN-NLEARHYDLLPEK------RWEVDLDGVEALADENT 149
           N+L+  P Y   L  +H  G N  N+ +    ++P+       RW+ + D      +   
Sbjct: 134 NVLLDEPAYSGTLQSLHPLGCNIINVASDESGIVPDSLRDILSRWKPE-DAKNPQKNTPK 192
Query: 150 VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAF--GSTP-YVPMGVF 206
               + N  NP GN  + +  ++I   AR    ++I D+ Y  L F  G  P ++ M V 
Sbjct: 193 FLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNSGRVPTFLSMDVD 252
Query: 207 GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAAS-HPVTFIQ 265
           G ++   +   I    I  G R+G+L    P         ++ +   +  ++ HP TF Q
Sbjct: 253 GRVIRADSFSKI----ISSGLRIGFLTGPKP--------LIERVILHIQVSTLHPSTFNQ 300
Query: 266 AAVPRIVDETNEAFFA----KIIGLLKETAD-ICYERIKEIPCITCPVKPQGAMFVMVKL 320
             + +++ E  E  F     ++I       D I     K +  +     P   MF+ +K 
Sbjct: 301 LMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIK- 359
Query: 321 NVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKN-----WLRIAFAA 364
               ++ I D  E   + A +  V++LPG    + +     +LR +F++
Sbjct: 360 ----VKGINDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS 404

>pdb|4GDY|A Chain A, Kynurenine Aminotransferase Ii Inhibitors Length = 439

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 143/349 (40%), Gaps = 48/349 (13%)
Query: 46  YSPTLGVP---SARRGIADYLNRDLPYKLSPE----DVYLTLGCSQAIEISLSVLARPGA 98
           YSP+ G+P   S  + +   L+        P     D+ +T G  Q +     ++  PG 
Sbjct: 74  YSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGD 133
Query: 99  NILIPRPGYP--LYEIHAAGSNN-NLEARHYDLLPEK------RWEVDLDGVEALADENT 149
           N+L+  P Y   L  +H  G N  N+ +    ++P+       RW+ + D      +   
Sbjct: 134 NVLLDEPAYSGTLQSLHPLGCNIINVASDESGIVPDSLRDILSRWKPE-DAKNPQKNTPK 192
Query: 150 VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAF--GSTP-YVPMGVF 206
               + N  NP GN  + +  ++I   AR    ++I D+ Y  L F  G  P ++ M V 
Sbjct: 193 FLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNSGRVPTFLSMDVD 252
Query: 207 GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAAS-HPVTFIQ 265
           G ++   +   I    I  G R+G+L    P         ++ +   +  ++ HP TF Q
Sbjct: 253 GRVIRADSFSKI----ISSGLRIGFLTGPKP--------LIERVILHIQVSTLHPSTFNQ 300
Query: 266 AAVPRIVDETNEAFFA----KIIGLLKETAD-ICYERIKEIPCITCPVKPQGAMFVMVKL 320
             + +++ E  E  F     ++I       D I     K +  +     P   MF+ +K 
Sbjct: 301 LMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIK- 359
Query: 321 NVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKN-----WLRIAFAA 364
               ++ I D  E   + A +  V++LPG    + +     +LR +F++
Sbjct: 360 ----VKGINDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS 404

>pdb|2XH1|A Chain A, Crystal Structure Of Human Kat Ii-Inhibitor Complex Length = 425

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 141/349 (40%), Gaps = 48/349 (13%)
Query: 46  YSPTLGVP---SARRGIADYLNRDLPYKLSPE----DVYLTLGCSQAIEISLSVLARPGA 98
           YSP+ G+P   S  + +   L+        P     D+ +T G  Q +     ++  PG 
Sbjct: 74  YSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGD 133
Query: 99  NILIPRPGYP--LYEIHAAGSNN-NLEARHYDLLPEK------RWEVDLDGVEALADENT 149
           N+L+  P Y   L  +H  G N  N+ +    ++P+       RW+ + D      +   
Sbjct: 134 NVLLDEPAYSGTLQSLHPLGCNIINVASDESGIVPDSLRDILSRWKPE-DAKNPQKNTPK 192
Query: 150 VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS---TPYVPMGVF 206
               + N  NP GN  + +  ++I   AR    ++I D+ Y  L F       ++ M V 
Sbjct: 193 FLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVD 252
Query: 207 GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAAS-HPVTFIQ 265
           G ++   +   I    I  G R+G+L    P         ++ +   +  ++ HP TF Q
Sbjct: 253 GRVIRADSFSKI----ISSGLRIGFLTGPKP--------LIERVILHIQVSTLHPSTFNQ 300
Query: 266 AAVPRIVDETNEAFFA----KIIGLLKETAD-ICYERIKEIPCITCPVKPQGAMFVMVKL 320
             + +++ E  E  F     ++I       D I     K +  +     P   MF+ +K 
Sbjct: 301 LMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIK- 359
Query: 321 NVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKN-----WLRIAFAA 364
               ++ I D  E   + A +  V++LPG    + +     +LR +F++
Sbjct: 360 ----VKGINDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS 404

>pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From Pseudomonas Aeruginosa Length = 412

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 141/345 (40%), Gaps = 24/345 (6%)
Query: 44  NCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIEISLSVLARPGANILI 102
           + YS + G+P  RR I+ +       ++ PE +  +T+G  + +   +      G  IL+
Sbjct: 69  HGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILV 128
Query: 103 PRPGYPLYEIHAAGSN-NNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPC 161
           P P YP   IH  G+     + R   L+P   +  +L+     +      +++  P NP 
Sbjct: 129 PNPSYP---IHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILGFPSNPT 185
Query: 162 GNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFG--STPYVPMGVFGSIVPVITLGSIS 219
                    +++   A+   ++V+ D  Y  + +     P + M V G+    +   ++S
Sbjct: 186 AQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSI-MQVPGAKDIAVEFFTLS 244
Query: 220 KRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVD-ETNEA 278
           K + + GWR+G++V         N   V ++    +   +  TF    V  I   E ++ 
Sbjct: 245 KSYNMAGWRIGFMVG--------NPELVSALARIKSYHDYG-TFTPLQVAAIAALEGDQQ 295
Query: 279 FFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKL 338
               I    ++  D+  + ++E   +     P+ +M+V  K+       +G  LEF  KL
Sbjct: 296 CVRDIARQYQQRRDVLVKGLREAGWMV--ENPKASMYVWAKIPEPYAH-LG-SLEFAKKL 351
Query: 339 AKEESVIILPGRTVG--MKNWLRIAFAAEPATLEDGLERIKAFCQ 381
            ++  V + PG   G    + +R A       L   +  IKA  +
Sbjct: 352 LQDAKVSVSPGIGFGDYGDDHVRFALIENRDRLRQAVRGIKAMFR 396

>pdb|2R2N|A Chain A, The Crystal Structure Of Human Kynurenine Aminotransferase Ii In Complex With Kynurenine Length = 425

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 141/349 (40%), Gaps = 48/349 (13%)
Query: 46  YSPTLGVP---SARRGIADYLNRDLPYKLSPE----DVYLTLGCSQAIEISLSVLARPGA 98
           YSP+ G+P   S  + +   L+        P     D+ +T G  Q +     ++  PG 
Sbjct: 74  YSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGD 133
Query: 99  NILIPRPGYP--LYEIHAAGSNN-NLEARHYDLLPEK------RWEVDLDGVEALADENT 149
           N+L+  P Y   L  +H  G N  N+ +    ++P+       RW+ + D      +   
Sbjct: 134 NVLLDEPAYSGTLQSLHPLGCNIINVASDESGIVPDSLRDILSRWKPE-DAKNPQKNTPK 192
Query: 150 VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS---TPYVPMGVF 206
               + N  NP GN  + +  ++I   AR    ++I D+ Y  L F       ++ M V 
Sbjct: 193 FLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVD 252
Query: 207 GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAAS-HPVTFIQ 265
           G ++   +   I    I  G R+G+L    P         ++ +   +  ++ HP TF Q
Sbjct: 253 GRVIRADSFSKI----ISSGLRIGFLTGPKP--------LIERVILHIQVSTLHPSTFNQ 300
Query: 266 AAVPRIVDETNEAFFA----KIIGLLKETAD-ICYERIKEIPCITCPVKPQGAMFVMVKL 320
             + +++ E  E  F     ++I       D I     K +  +     P   MF+ +K 
Sbjct: 301 LMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIK- 359
Query: 321 NVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKN-----WLRIAFAA 364
               ++ I D  E   + A +  V++LPG    + +     +LR +F++
Sbjct: 360 ----VKGINDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS 404

>pdb|2QLR|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase Ii Length = 425

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 141/349 (40%), Gaps = 48/349 (13%)
Query: 46  YSPTLGVP---SARRGIADYLNRDLPYKLSPE----DVYLTLGCSQAIEISLSVLARPGA 98
           YSP+ G+P   S  + +   L+        P     D+ +T G  Q +     ++  PG 
Sbjct: 74  YSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGD 133
Query: 99  NILIPRPGYP--LYEIHAAGSNN-NLEARHYDLLPEK------RWEVDLDGVEALADENT 149
           N+L+  P Y   L  +H  G N  N+ +    ++P+       RW+ + D      +   
Sbjct: 134 NVLLDEPAYSGTLQSLHPLGCNIINVASDESGIVPDSLRDILSRWKPE-DAKNPQKNTPK 192
Query: 150 VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS---TPYVPMGVF 206
               + N  NP GN  + +  ++I   AR    ++I D+ Y  L F       ++ M V 
Sbjct: 193 FLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVD 252
Query: 207 GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAAS-HPVTFIQ 265
           G ++   +   I    I  G R+G+L    P         ++ +   +  ++ HP TF Q
Sbjct: 253 GRVIRADSFSXI----ISSGLRIGFLTGPKP--------LIERVILHIQVSTLHPSTFNQ 300
Query: 266 AAVPRIVDETNEAFFA----KIIGLLKETAD-ICYERIKEIPCITCPVKPQGAMFVMVKL 320
             + +++ E  E  F     ++I       D I     K +  +     P   MF+ +K 
Sbjct: 301 LMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIK- 359
Query: 321 NVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKN-----WLRIAFAA 364
               ++ I D  E   + A +  V++LPG    + +     +LR +F++
Sbjct: 360 ----VKGINDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS 404

>pdb|3UE8|A Chain A, Kynurenine Aminotransferase Ii Inhibitors Length = 439

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 141/349 (40%), Gaps = 48/349 (13%)
Query: 46  YSPTLGVP---SARRGIADYLNRDLPYKLSPE----DVYLTLGCSQAIEISLSVLARPGA 98
           YSP+ G+P   S  + +   L+        P     D+ +T G  Q +     ++  PG 
Sbjct: 74  YSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGD 133
Query: 99  NILIPRPGYP--LYEIHAAGSNN-NLEARHYDLLPEK------RWEVDLDGVEALADENT 149
           N+L+  P Y   L  +H  G N  N+ +    ++P+       RW+ + D      +   
Sbjct: 134 NVLLDEPAYSGTLQSLHPLGCNIINVASDESGIVPDSLRDILSRWKPE-DAKNPQKNTPK 192
Query: 150 VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS---TPYVPMGVF 206
               + N  NP GN  + +  ++I   AR    ++I D+ Y  L F       ++ M V 
Sbjct: 193 FLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVD 252
Query: 207 GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAAS-HPVTFIQ 265
           G ++   +   I    I  G R+G+L    P         ++ +   +  ++ HP TF Q
Sbjct: 253 GRVIRADSFSKI----ISSGLRIGFLTGPKP--------LIERVILHIQVSTLHPSTFNQ 300
Query: 266 AAVPRIVDETNEAFFA----KIIGLLKETAD-ICYERIKEIPCITCPVKPQGAMFVMVKL 320
             + +++ E  E  F     ++I       D I     K +  +     P   MF+ +K 
Sbjct: 301 LMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIK- 359
Query: 321 NVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKN-----WLRIAFAA 364
               ++ I D  E   + A +  V++LPG    + +     +LR +F++
Sbjct: 360 ----VKGINDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS 404

>pdb|4DGT|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase From Clostridium Difficile 630 Crystallized With Magnesium Formate Length = 391

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 73/354 (20%), Positives = 145/354 (40%), Gaps = 26/354 (7%)
Query: 34  VVDALRTA-HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSV 92
           ++D+L+       Y  T    S    I ++L R   +K+  E +  + G   AI + ++ 
Sbjct: 50  IIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINE 109
Query: 93  LARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAI 152
           L +    I+I  P Y  +      +N  L       L    + +D + +E    ++    
Sbjct: 110 LTKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKI-KDVKLF 168
Query: 153 VIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVP- 211
           ++ NP NP G V++   L+K+        + +I+DE+++ +      ++PM         
Sbjct: 169 ILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEK 228
Query: 212 -VITLGSISKRWIVPGWRLGWLVTSDPNG--ILQNSGFVDSIK--GCLNAASHPVTFIQA 266
             IT  + +K + + G +  ++V  D     +L ++     IK   C +  +   ++   
Sbjct: 229 NTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASY--- 285
Query: 267 AVPRIVDETNEAFFAKIIGLLKETADICYERIKE-IPCITCPVKPQGAMFVMVKLNVSML 325
                     E++    +  L+   D   + I E +P +    KP+G   + V  +   L
Sbjct: 286 -------NNGESWLESFLEYLESNIDFAIKYINENMPKLKVR-KPEGTYLLWVDFSALGL 337
Query: 326 EDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIK 377
            D  ++LE    L ++  V +  G + G+    + RI  A   + LE+ L RIK
Sbjct: 338 SD--EELESI--LVQKGKVALNQGNSFGIGGSGYQRINLACPRSMLEEALIRIK 387

>pdb|2VGZ|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase Ii Length = 427

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 141/349 (40%), Gaps = 48/349 (13%)
Query: 46  YSPTLGVP---SARRGIADYLNRDLPYKLSPE----DVYLTLGCSQAIEISLSVLARPGA 98
           YSP+ G+P   S  + +   L+        P     D+ +T G  Q +     ++  PG 
Sbjct: 76  YSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGD 135
Query: 99  NILIPRPGYP--LYEIHAAGSNN-NLEARHYDLLPEK------RWEVDLDGVEALADENT 149
           N+L+  P Y   L  +H  G N  N+ +    ++P+       RW+ + D      +   
Sbjct: 136 NVLLDEPAYSGTLQSLHPLGCNIINVASDESGIVPDSLRDILSRWKPE-DAKNPQKNTPK 194
Query: 150 VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS---TPYVPMGVF 206
               + N  NP GN  + +  ++I   AR    ++I D+ Y  L F       ++ M V 
Sbjct: 195 FLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVD 254
Query: 207 GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAAS-HPVTFIQ 265
           G ++   +   I    I  G R+G+L    P         ++ +   +  ++ HP TF Q
Sbjct: 255 GRVIRADSFSXI----ISSGLRIGFLTGPKP--------LIERVILHIQVSTLHPSTFNQ 302
Query: 266 AAVPRIVDETNEAFFA----KIIGLLKETAD-ICYERIKEIPCITCPVKPQGAMFVMVKL 320
             + +++ E  E  F     ++I       D I     K +  +     P   MF+ +K 
Sbjct: 303 LMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIK- 361
Query: 321 NVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKN-----WLRIAFAA 364
               ++ I D  E   + A +  V++LPG    + +     +LR +F++
Sbjct: 362 ----VKGINDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS 406

>pdb|3G7Q|A Chain A, Crystal Structure Of Valine-Pyruvate Aminotransferase Avta (Np_462565.1) From Salmonella Typhimurium Lt2 At 1.80 A Resolution Length = 417

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 142/339 (41%), Gaps = 41/339 (12%)
Query: 67  LPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLE---- 122
           L + + P+++ LT G   A     ++ A   A+    +  +PL   +   +++ LE    
Sbjct: 92  LGWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLF 151
Query: 123 --AR-HYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARN 179
             AR + +LLPE +++  +D       E T  I +  P NP GNV + + L K+ R A  
Sbjct: 152 VSARPNIELLPEGQFKYHVDFEHLHIGEETGXICVSRPTNPTGNVITDEELXKLDRLANQ 211
Query: 180 LGIIVIADEVYNHLAFGSTPYVPMGVFGSIVP-----VITLGSISKRWIVPGWRLGWLVT 234
             I ++ D  Y        P+ P  +F    P     +I   S+SK  + PG R G ++ 
Sbjct: 212 HNIPLVIDNAY------GVPF-PGIIFSEARPLWNPNIILCXSLSKLGL-PGSRCGIIIA 263
Query: 235 SDP--NGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETAD 292
           +D     I   +G +    G    A       +  + R+ +   + F+ + +   ++T  
Sbjct: 264 NDKTITAIANXNGIISLAPGGXGPAXXCEXIKRNDLLRLSETVIKPFYYQRV---QQTIA 320
Query: 293 ICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTV 352
           I    + E  C+    KP+GA+F+ +       +D+    E   +  K   V+ +PG   
Sbjct: 321 IIRRYLSEERCLIH--KPEGAIFLWL-----WFKDLPITTELLYQRLKARGVLXVPGHYF 373
Query: 353 --GM-KNW------LRIAFAAEPATLEDGLERIKAFCQR 382
             G+ K W       R  +  EP  +E G++ +    +R
Sbjct: 374 FPGLDKPWPHTHQCXRXNYVPEPDKIEAGVKILAEEIER 412

>pdb|3FDB|A Chain A, Crystal Structure Of A Putative Plp-Dependent Beta-Cystathionase (Aecd, Dip1736) From Corynebacterium Diphtheriae At 1.99 A Resolution Length = 377

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 77/357 (21%), Positives = 141/357 (39%), Gaps = 30/357 (8%)
Query: 33  AVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSV 92
           A+ DA++   +  Y P   + S  +  A++      Y+  PE ++      + + I++  
Sbjct: 44  AITDAVQREAFG-YQPDGSLLS--QATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDH 100
Query: 93  LARPGANILIPRPGYP-LYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVA 151
                + +++P P YP  + + +A     +         +    ++L  VE        +
Sbjct: 101 FTPAQSKVIVPTPAYPPFFHLLSATQREGI-------FIDATGGINLHDVEKGFQAGARS 153
Query: 152 IVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVP 211
           I++ NP NP G VF+ + L ++   A      V+ DE++  L F     V  GV  +   
Sbjct: 154 ILLCNPYNPLGXVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAAS 213
Query: 212 V-ITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPR 270
           V IT+ + S  W + G +   ++ S+P+           IK    A++  +   +AA   
Sbjct: 214 VCITITAPSXAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKD--GASTLGLIAAEAAYRY 271
Query: 271 IVDETNEAFFAKIIGLLKETADICYERI-KEIPCITCPVKPQGAMFVM-VKLNVSMLEDI 328
             D     F  + +  LK   D     I K IP     + P  A ++  +    + +E  
Sbjct: 272 GTD-----FLNQEVAYLKNNHDFLLHEIPKRIP--GAKITPXQATYLXWIDFRDTTIE-- 322
Query: 329 GDDLEFCLKLAKEESVIILPGRTVGMK--NWLRIAFAAEPATLEDGLERIKAFCQRH 383
           G   EF ++ AK   V    G   G     + R+ FA     LE+ ++R       H
Sbjct: 323 GSPSEFFIEKAK---VAXNDGAWFGEDGTGFCRLNFATSREVLEEAIDRXAKAVSHH 376

>pdb|3F6T|A Chain A, Crystal Structure Of Aspartate Aminotransferase (E.C. 2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus Ncfm At 2.15 A Resolution Length = 533

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 93/214 (43%), Gaps = 36/214 (16%)
Query: 59  IADYLNRDLPYK----LSPEDVYLTLGCSQAIEISLSVLA-----RPGANILIPRPGY-P 108
           I +Y  ++L YK        D++ T G + AI  +   LA     + G  I I  P + P
Sbjct: 146 IINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTP 205
Query: 109 LYEIHAAGSNNNLEARHYDLLP-------EKRWEVDLDGVEALADENTVAIVIINPGNPC 161
              I         E + Y+L+        +  WE++ + +E L D +  A++++NP NP 
Sbjct: 206 YLRIP--------ELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPT 257
Query: 162 GNVFSYQHLQKIARTA-RNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVIT--LGS 217
              F    L  I +   +N  + +I+DEVY         +VP      S+VP  T  + S
Sbjct: 258 SKEFDTNALNAIKQAVEKNPKLXIISDEVYG-------AFVPNFKSIYSVVPYNTXLVYS 310
Query: 218 ISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIK 251
            S  +   GWRLG +  ++ N    N   +D ++
Sbjct: 311 YSXLFGCTGWRLGVIALNEKNVFDDNIAHLDKVE 344

>pdb|2O1B|A Chain A, Structure Of Aminotransferase From Staphylococcus Aureus Length = 404

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 87/392 (22%), Positives = 152/392 (38%), Gaps = 55/392 (14%)
Query: 6   GQETRHSPWPRRPLGVSLLSDSTVAE--DAVVDALRTAHYNCYSPTLGVPSARRGIADYL 63
           G++  H P P     V +    T     D    AL       Y    G  + ++ I D+ 
Sbjct: 39  GRKIEHGPLPLINXAVGIPDGPTPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFY 98
Query: 64  NRDLPYKLSPED-VYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNN--- 119
            R     L  ED V +  G    +    + +  PG  +L+P PGY  Y      ++    
Sbjct: 99  QRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLADGKPV 158
Query: 120 --NLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTA 177
             NLE  HY  LP      D   V++   + T  I +  P NP G+  + +   +     
Sbjct: 159 PLNLEPPHY--LP------DWSKVDSQIIDKTKLIYLTYPNNPTGSTATKEVFDEAIAKF 210
Query: 178 RNLGIIVIADEVYNHLAF-GSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLV-TS 235
           +     ++ D  Y    F    P +     G  V  I + S+SK +   G+R+G+ V   
Sbjct: 211 KGTDTKIVHDFAYGAFGFDAKNPSILASENGKDV-AIEIYSLSKGYNXSGFRVGFAVGNK 269
Query: 236 DPNGILQ------NSGFVDSIK-GCLNAASHPVTFI--QAAVPRIVDETNEAFFAKIIGL 286
           D    L+      N+G   +++   + A +H   F+  Q+ V +   +  EA  AK    
Sbjct: 270 DXIQALKKYQTHTNAGXFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAXLAK---- 325
Query: 287 LKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVII 346
               AD+ +            V  +G ++V ++          D  +F   L +E+S+++
Sbjct: 326 ----ADLPF------------VHAKGGIYVWLETPPGY-----DSEQFEQFLVQEKSILV 364
Query: 347 LPGRTVGMKN--WLRIAFAAEPATLEDGLERI 376
            PG+  G     ++RI+ A +   L++   R+
Sbjct: 365 APGKPFGENGNRYVRISLALDDQKLDEAAIRL 396

>pdb|2Z1Z|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With L-malate Ion Length = 432

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 99/267 (37%), Gaps = 29/267 (10%)
Query: 43  YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILI 102
           Y+ Y    G    R  IA      L   +  +DV+++ G    I   L V+      I +
Sbjct: 91  YSGYGAEQGAKPLRAAIAKTFYGGL--GIGDDDVFVSDGAKCDIS-RLQVMFGSNVTIAV 147
Query: 103 PRPGYPLYE----IHAAGSNNNLEARHYDLL------PEKRWEVDLDGVEALADENTVAI 152
             P YP Y     I       N + + Y  +      PE  +  DL  V       T  I
Sbjct: 148 QDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLSTVG-----RTDII 202
Query: 153 VIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPV 212
              +P NP G   + + L ++   A+  G I++ D  Y        P     + G+    
Sbjct: 203 FFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVA 262
Query: 213 ITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDS------IKGCLNAASHPVTFIQA 266
           +   S SK     G RLGW V   P  +L + GF  +      I  C N AS+       
Sbjct: 263 METASFSKYAGFTGVRLGWTVI--PKKLLYSDGFPVAKDFNRIICTCFNGASNISQ--AG 318
Query: 267 AVPRIVDETNEAFFAKIIGLLKETADI 293
           A+  +  E  EA   K+IG  KE  +I
Sbjct: 319 ALACLTPEGLEAMH-KVIGFYKENTNI 344

>pdb|1GEW|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase Complexed With Pyridoxal 5'-Phosphate Length = 356

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 105/243 (43%), Gaps = 35/243 (14%)
Query: 71  LSPEDVYLTLGCSQAIEISLSVLARPGAN-ILIPRPGYPLYEIHAAGSNNNLEARHYDLL 129
           + PE V ++ G  + IE+ +     PG + IL   P Y +Y + A      +E R    L
Sbjct: 73  VKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSA--ETIGVECRTVPTL 130
Query: 130 PEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEV 189
               W++DL G+    D   V + + +P NP G + + Q  + +    R    IV+ADE 
Sbjct: 131 --DNWQLDLQGISDKLDGVKV-VYVCSPNNPTGQLINPQDFRTLLELTRGKA-IVVADEA 186
Query: 190 YNHLAFGSTPYVPMGVFGSIVP-VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD 248
           Y        P   +  + +  P +  L ++SK + + G R G+         L N   ++
Sbjct: 187 YIEFC----PQASLAGWLAEYPHLAILRTLSKAFALAGLRCGF--------TLANEEVIN 234
Query: 249 SIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAK-IIGLLKETADICYER------IKEI 301
            +   +  A +P++      P + D   +A   + I+ + +  A I  ER      +KEI
Sbjct: 235 LLMKVI--APYPLS-----TP-VADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEI 286
Query: 302 PCI 304
           PC+
Sbjct: 287 PCV 289

>pdb|3NRA|A Chain A, Crystal Structure Of An Aspartate Aminotransferase (Yp_354942.1) From Rhodobacter Sphaeroides 2.4.1 At 2.15 A Resolution Length = 407

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 131 EKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVY 190
           E R  +DL G+E          +  NP NP G V+S + + +IA  A   G  VIAD++Y
Sbjct: 162 ETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLY 221
Query: 191 NHLAFGSTPYVPMGVFGSIVP--VITLGSISKRWIVPGWRLG 230
           + L +    Y  +    ++    V+T+   S    + G+RLG
Sbjct: 222 SRLRYAGASYTHLRAEAAVDAENVVTIXGPSXTESLSGYRLG 263

>pdb|3CQ4|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum Length = 376

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 26/222 (11%)
Query: 33  AVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSV 92
           A VD + T   N Y P       R  +A Y+ +     ++ ++++   G ++ ++  L  
Sbjct: 51  ATVDKIAT-ELNRY-PERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQA 108
Query: 93  LARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKR---WEVDLD-GVEALADEN 148
              PG   L  +P Y ++ I A G+       H + +   R   + +D+D  +E +  + 
Sbjct: 109 FGGPGRTALGFQPSYSMHPILAKGT-------HTEFIAVSRGADFRIDMDVALEEIRAKQ 161
Query: 149 TVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS 208
              + +  P NP G+V S   +++I   A     IVI DE Y    F  +P     +   
Sbjct: 162 PDIVFVTTPNNPTGDVTSLDDVERIINVAPG---IVIVDEAYAE--FSPSPSATTLLEKY 216
Query: 209 IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSI 250
              ++   ++SK +   G RLG+ V         N  F+D++
Sbjct: 217 PTKLVVSRTMSKAFDFAGGRLGYFVA--------NPAFIDAV 250

>pdb|3EIA|A Chain A, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With L-Glu: External Aldimine Form Length = 432

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 99/267 (37%), Gaps = 29/267 (10%)
Query: 43  YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILI 102
           Y+ Y    G    R  IA      L   +  +DV+++ G    I   L V+      I +
Sbjct: 91  YSGYGAEQGAKPLRAAIAKTFYGGL--GIGDDDVFVSDGAKCDIS-RLQVMFGSNVTIAV 147
Query: 103 PRPGYPLYE----IHAAGSNNNLEARHYDLL------PEKRWEVDLDGVEALADENTVAI 152
             P YP Y     I       N + + Y  +      PE  +  DL  V       T  I
Sbjct: 148 QDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLSTVG-----RTDII 202
Query: 153 VIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPV 212
              +P NP G   + + L ++   A+  G I++ D  Y        P     + G+    
Sbjct: 203 FFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVA 262
Query: 213 ITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDS------IKGCLNAASHPVTFIQA 266
           +   S S+     G RLGW V   P  +L + GF  +      I  C N AS+       
Sbjct: 263 METASFSQYAGFTGVRLGWTVI--PKKLLYSDGFPVAKDFNRIICTCFNGASNISQ--AG 318
Query: 267 AVPRIVDETNEAFFAKIIGLLKETADI 293
           A+  +  E  EA   K+IG  KE  +I
Sbjct: 319 ALACLTPEGLEAMH-KVIGFYKENTNI 344

>pdb|3CQ5|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum In Complex With Pmp Length = 369

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 26/222 (11%)
Query: 33  AVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSV 92
           A VD + T   N Y P       R  +A Y+ +     ++ ++++   G ++ ++  L  
Sbjct: 54  ATVDKIAT-ELNRY-PERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQA 111
Query: 93  LARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKR---WEVDLD-GVEALADEN 148
              PG   L  +P Y ++ I A G+       H + +   R   + +D+D  +E +  + 
Sbjct: 112 FGGPGRTALGFQPSYSMHPILAKGT-------HTEFIAVSRGADFRIDMDVALEEIRAKQ 164
Query: 149 TVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS 208
              + +  P NP G+V S   +++I   A     IVI DE Y    F  +P     +   
Sbjct: 165 PDIVFVTTPNNPTGDVTSLDDVERIINVAPG---IVIVDEAYAE--FSPSPSATTLLEKY 219
Query: 209 IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSI 250
              ++   ++SK +   G RLG+ V         N  F+D++
Sbjct: 220 PTKLVVSRTMSKAFDFAGGRLGYFVA--------NPAFIDAV 253

>pdb|3EI8|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With Ll-Dap: External Aldimine Form Length = 432

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 98/267 (36%), Gaps = 29/267 (10%)
Query: 43  YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILI 102
           Y+ Y    G    R  IA      L   +  +DV+++ G    I   L V+      I +
Sbjct: 91  YSGYGAEQGAKPLRAAIAKTFYGGL--GIGDDDVFVSDGAKCDIS-RLQVMFGSNVTIAV 147
Query: 103 PRPGYPLYE----IHAAGSNNNLEARHYDLL------PEKRWEVDLDGVEALADENTVAI 152
             P YP Y     I       N + + Y  +      PE  +  DL  V       T  I
Sbjct: 148 QDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLSTVG-----RTDII 202
Query: 153 VIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPV 212
              +P NP G   + + L ++   A+  G I++ D  Y        P     + G+    
Sbjct: 203 FFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVA 262
Query: 213 ITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDS------IKGCLNAASHPVTFIQA 266
           +   S S      G RLGW V   P  +L + GF  +      I  C N AS+       
Sbjct: 263 METASFSNYAGFTGVRLGWTVI--PKKLLYSDGFPVAKDFNRIICTCFNGASNISQ--AG 318
Query: 267 AVPRIVDETNEAFFAKIIGLLKETADI 293
           A+  +  E  EA   K+IG  KE  +I
Sbjct: 319 ALACLTPEGLEAMH-KVIGFYKENTNI 344

>pdb|2Z20|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase From Arabidopsis Thaliana Length = 432

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 97/267 (36%), Gaps = 29/267 (10%)
Query: 43  YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILI 102
           Y+ Y    G    R  IA      L   +  +DV+++ G    I   L V       I +
Sbjct: 91  YSGYGAEQGAKPLRAAIAKTFYGGL--GIGDDDVFVSDGAKCDIS-RLQVXFGSNVTIAV 147
Query: 103 PRPGYPLYE----IHAAGSNNNLEARHYDLL------PEKRWEVDLDGVEALADENTVAI 152
             P YP Y     I       N + + Y  +      PE  +  DL  V       T  I
Sbjct: 148 QDPSYPAYVDSSVIXGQTGQFNTDVQKYGNIEYXRCTPENGFFPDLSTVG-----RTDII 202
Query: 153 VIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPV 212
              +P NP G   + + L ++   A+  G I++ D  Y        P     + G+    
Sbjct: 203 FFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAXYXSDDNPRSIFEIPGAEEVA 262
Query: 213 ITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDS------IKGCLNAASHPVTFIQA 266
               S SK     G RLGW V   P  +L + GF  +      I  C N AS+       
Sbjct: 263 XETASFSKYAGFTGVRLGWTVI--PKKLLYSDGFPVAKDFNRIICTCFNGASNISQ--AG 318
Query: 267 AVPRIVDETNEAFFAKIIGLLKETADI 293
           A+  +  E  EA   K+IG  KE  +I
Sbjct: 319 ALACLTPEGLEAXH-KVIGFYKENTNI 344

>pdb|4FL0|A Chain A, Crystal Structure Of Ald1 From Arabidopsis Thaliana Length = 456

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 20/214 (9%)
Query: 43  YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILI 102
           Y  Y    G  + R+ IA+   RDL  K    +V+++ G    I   L +L      I +
Sbjct: 105 YRGYGLEQGNKTLRKAIAETFYRDLHVK--SNEVFVSDGAQSDIS-RLQLLLGSNVTIAV 161
Query: 103 PRPGYPLYE-----IHAAGSNNNLEARHYDLL-----PEKRWEVDLDGVEALADENTVAI 152
             P +P Y      I   G  +    ++ +++     P   +  DL    A+     V I
Sbjct: 162 QDPTFPAYIDSSVIIGQTGHFHEKTKKYQNVVYMPCGPNNSFFPDL----AMTPRTDV-I 216
Query: 153 VIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPV 212
              +P NP G V S + L ++   A+  G I+I D  Y       +P     + G+    
Sbjct: 217 FFCSPNNPTGYVASRKQLHQLVDFAKTNGSIIIFDSAYAAFIEDGSPRSIYEIPGAREVA 276
Query: 213 ITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF 246
           I + S SK     G RLGW +   P+ +L ++GF
Sbjct: 277 IEVSSFSKFAGFTGVRLGWSII--PDELLYSNGF 308

>pdb|1FG3|A Chain A, Crystal Structure Of L-Histidinol Phosphate Aminotransferase Complexed With L-Histidinol Length = 356

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 103/243 (42%), Gaps = 35/243 (14%)
Query: 71  LSPEDVYLTLGCSQAIEISLSVLARPGAN-ILIPRPGYPLYEIHAAGSNNNLEARHYDLL 129
           + PE V ++ G  + IE+ +     PG + IL   P Y  Y + A      +E R    L
Sbjct: 73  VKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGXYSVSA--ETIGVECRTVPTL 130
Query: 130 PEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEV 189
               W++DL G+    D   V + + +P NP G + + Q  + +    R    IV+ADE 
Sbjct: 131 --DNWQLDLQGISDKLDGVKV-VYVCSPNNPTGQLINPQDFRTLLELTRGKA-IVVADEA 186
Query: 190 YNHLAFGSTPYVPMGVFGSIVP-VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD 248
           Y        P   +  + +  P +  L ++SK + + G R G+         L N   ++
Sbjct: 187 YIEFC----PQASLAGWLAEYPHLAILRTLSKAFALAGLRCGF--------TLANEEVIN 234
Query: 249 SIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAK-IIGLLKETADICYER------IKEI 301
            +   +  A +P++      P + D   +A   + I+   +  A I  ER      +KEI
Sbjct: 235 LLXKVI--APYPLS-----TP-VADIAAQALSPQGIVAXRERVAQIIAEREYLIAALKEI 286
Query: 302 PCI 304
           PC+
Sbjct: 287 PCV 289

>pdb|3FTB|A Chain A, The Crystal Structure Of The Histidinol-Phosphate Aminotransferase From Clostridium Acetobutylicum Length = 361

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 86/178 (48%), Gaps = 14/178 (7%)
Query: 63  LNRDLPYKLSPEDVYLTLG--CSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNN 120
           LN+ +   L  +D+ + LG   S+ IE+S+S+  +    ILI  P Y  YEI+A     +
Sbjct: 66  LNKSIENYLKLKDIGIVLGNGASEIIELSISLFEK----ILIIVPSYAEYEINAKKHGVS 121
Query: 121 LEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNL 180
           +   + D    +   +D + + +  D+   +++I NP NP G + + +    + + A   
Sbjct: 122 VVFSYLD----ENMCIDYEDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEK 176
Query: 181 GIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDP 237
              +I DE +  + F   P    +G   +   +  + +++K + +PG R G+ +T++ 
Sbjct: 177 KKTIIIDEAF--IEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNK 232

>pdb|3CQ6|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum Holo-Form (Plp Covalently Bound ) Length = 369

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 26/222 (11%)
Query: 33  AVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSV 92
           A VD + T   N Y P       R  +A Y+ +     ++ ++++   G ++ ++  L  
Sbjct: 54  ATVDKIAT-ELNRY-PERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQA 111
Query: 93  LARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKR---WEVDLD-GVEALADEN 148
              PG   L  +P Y ++ I A G+       H + +   R   + +D+D  +E +  + 
Sbjct: 112 FGGPGRTALGFQPSYSMHPILAKGT-------HTEFIAVSRGADFRIDMDVALEEIRAKQ 164
Query: 149 TVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS 208
              + +  P NP G+V S   +++I   A     IVI DE Y    F  +P     +   
Sbjct: 165 PDIVFVTTPNNPTGDVTSLDDVERIINVAPG---IVIVDEAYAE--FSPSPSATTLLEKY 219
Query: 209 IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSI 250
              ++   ++S  +   G RLG+ V         N  F+D++
Sbjct: 220 PTKLVVSRTMSXAFDFAGGRLGYFVA--------NPAFIDAV 253

>pdb|3FFH|A Chain A, The Crystal Structure Of Histidinol-phosphate Aminotransferase From Listeria Innocua Clip11262. Length = 363

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 54  SARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIH 113
           S R+ +AD+      Y+L  E++  T G  + IE+   VL     N +   P +  Y  +
Sbjct: 71  SLRKEVADF------YQLEEEELIFTAGVDELIELLTRVLLDTTTNTVXATPTFVQYRQN 124
Query: 114 AAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKI 173
           A       E R   LL +   E DL+G     DE T  + I NP NP GN      +Q  
Sbjct: 125 ALIEG--AEVREIPLLQD--GEHDLEGXLNAIDEKTTIVWICNPNNPTGNYIELADIQAF 180
Query: 174 ARTARNLGIIVIADEVY 190
                +  ++V+ DE Y
Sbjct: 181 LDRVPS-DVLVVLDEAY 196

>pdb|3EZS|A Chain A, Crystal Structure Of Aminotransferase Aspb (Np_207418.1) From Helicobacter Pylori 26695 At 2.19 A Resolution Length = 376

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 140/365 (38%), Gaps = 43/365 (11%)
Query: 34  VVDALR--TAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI--S 89
           + DAL+  T   N Y  +    S R     +  R    +L   ++  TLG  + +    S
Sbjct: 41  IQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPS 100
Query: 90  LSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENT 149
             +       I  P P Y +YE    G+   ++A+   LL     E D        +   
Sbjct: 101 FVLFDYQNPTIAYPNPFYQIYE----GAAKFIKAK--SLLXPLTKENDFTPSLNEKELQE 154
Query: 150 VAIVIIN-PGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTP-----YVPM 203
           V +VI+N P NP G   S + L    + A     I+I DE Y+ +   + P        +
Sbjct: 155 VDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACXL 214
Query: 204 GVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTF 263
               +   V+ + S+SKR   PG R G++     + +L+      +  G  +A +     
Sbjct: 215 AGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGD--SRLLEKYKAFRAYLGYTSANA----I 268
Query: 264 IQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVS 323
            +A+    +D+ +  FF  I     + A   ++     P          + +V +     
Sbjct: 269 QKASEAAWLDDRHAEFFRNIYANNLKLARKIFKNTLIYPY---------SFYVYL----- 314
Query: 324 MLEDIGDDLEFCLKLAKEESVIILPGRTVGMK----NWLRIAFAAEPATLEDGLERIKAF 379
               + +   F   L + E +I LP   +G      +++R+A   +   LE  LE I+ +
Sbjct: 315 ---PVQNGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIETY 371
Query: 380 CQRHA 384
            + HA
Sbjct: 372 RENHA 376

>pdb|2DOU|A Chain A, Probable N-Succinyldiaminopimelate Aminotransferase (Ttha0342) From Thermus Thermophilus Hb8 Length = 376

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/261 (20%), Positives = 107/261 (40%), Gaps = 20/261 (7%)
Query: 80  LGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLD 139
           +G  + +   L  L  P   +L+P   YP Y     G+      R + +   +    DL 
Sbjct: 94  IGSQEGLAHLLLALTEPEDLLLLPEVAYPSY----FGAARVASLRTFLIPLREDGLADLK 149
Query: 140 GVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTP 199
            V          +++  P NP G V  + + ++    AR  G+ +I D  Y    +    
Sbjct: 150 AVPEGVWREAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEA 209
Query: 200 YVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASH 259
             P+ + G+   V+ L S+SK + + G+RLG+ + S+     +    ++ +KG ++   +
Sbjct: 210 PSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGSE-----EALARLERVKGVIDFNQY 264
Query: 260 PVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVK 319
                 A V R+  E  +     + G  +   +      + +  +   + P+  M++  +
Sbjct: 265 ------AGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKGVLSLLPPRATMYLWGR 318
Query: 320 LNVSMLEDIGDDLEFCLKLAK 340
           L   +     DDLEF L+L +
Sbjct: 319 LPEGV-----DDLEFGLRLVE 334

>pdb|1LKC|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate Decarboxylase From Salmonella Enterica Length = 364

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 5/136 (3%)
Query: 101 LIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNP 160
           +I  PG+   E   A + +  E R + L     W++    +EAL   +   + +  P NP
Sbjct: 102 MIVTPGFA--EYGRALAQSGCEIRRWSLREADGWQLTDAILEALT-PDLDCLFLCTPNNP 158
Query: 161 CGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISK 220
            G +     LQ IA   ++L I +I DE +       T ++P         +  L S++K
Sbjct: 159 TGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIP--ALKDNPHIWVLRSLTK 216
Query: 221 RWIVPGWRLGWLVTSD 236
            + +PG RLG+LV SD
Sbjct: 217 FYAIPGLRLGYLVNSD 232

>pdb|3ASA|A Chain A, Crystal Structure Of Apo-Ll-Diaminopimelate Aminotransferase From Chlamydia Trachomatis Length = 400

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 78/191 (40%), Gaps = 15/191 (7%)
Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRP 105
           Y P  G+P+ R+ +++   R     +  ++++++ G    +   LS    P   + I  P
Sbjct: 71  YGPDFGLPALRQKLSEDFYRGF---VDAKEIFISDGAKVDLFRLLSFFG-PNQTVAIQDP 126
Query: 106 GYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVF 165
            YP Y +  A      E      L E  +  +        D +   + + +P NP G V 
Sbjct: 127 SYPAY-LDIARLTGAKEIIALPCLQENAFFPEFP-----EDTHIDILCLCSPNNPTGTVL 180
Query: 166 SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF---GSIVPVITLGSISKRW 222
           +   L+ I   A    I+++ D  Y+   F S P +P  +F    +    I + S SK  
Sbjct: 181 NKDQLRAIVHYAIEHEILILFDAAYS--TFISDPSLPKSIFEIPDARFCAIEINSFSKPL 238
Query: 223 IVPGWRLGWLV 233
              G RLGW V
Sbjct: 239 GFAGIRLGWTV 249

>pdb|3DZZ|A Chain A, Crystal Structure Of A Putative Plp-Dependent Aminotransferase (Lbul_1103) From Lactobacillus Delbrueckii Subsp. At 1.61 A Resolution Length = 391

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 74/172 (43%), Gaps = 17/172 (9%)
Query: 57  RGIADYLNRDLPYKLSPEDVYLTL--GCSQAIEISLSVLARPGANILIPRPGYPLYEIHA 114
           + +AD+   ++ ++  P++ +     G   AI   +     PG  IL+  P Y  +  ++
Sbjct: 69  KAVADW--EEIEHRARPKEDWCVFASGVVPAISAXVRQFTSPGDQILVQEPVYNXF--YS 124
Query: 115 AGSNNNLEARHYDLLPEK-RWEVDL-DGVEALADENTVAIVIINPGNPCGNVFSYQHLQK 172
               N       DL+ E  ++ V+  D  E LA  +    V  NP NP G  +S + +++
Sbjct: 125 VIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRXXVFCNPHNPIGYAWSEEEVKR 184
Query: 173 IARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIV 224
           IA       +++I+DE++  L               I P  T+   +K W+V
Sbjct: 185 IAELCAKHQVLLISDEIHGDLVLTDE---------DITPAFTVDWDAKNWVV 227

>pdb|1C7N|A Chain A, Crystal Structure Of Cystalysin From Treponema Denticola Contains A Pyridoxal 5'-Phosphate Cofactor Length = 399

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 83/190 (43%), Gaps = 12/190 (6%)
Query: 56  RRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAA 115
           ++ +  ++     + +  + +  T G   A+  ++    +PG  ++I  P Y  Y    A
Sbjct: 72  KKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVY--YPFFMA 129
Query: 116 GSNNNLEARHYDLLPEK-RWEVDLDGVEALA-DENTVAIVIINPGNPCGNVFSYQHLQKI 173
             N   +    +LL +   + +D   +E L+ D+N  A++  +P NP G V+    LQKI
Sbjct: 130 IKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKI 189
Query: 174 ARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSI-----VPVITLGSISKRWIVPGWR 228
                   +++ +DE++  L     P     VF SI        IT  + SK + + G  
Sbjct: 190 KDIVLKSDLMLWSDEIHFDLIM---PGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMG 246
Query: 229 LGWLVTSDPN 238
           +  ++  +P+
Sbjct: 247 MSNIIIKNPD 256

>pdb|1D2F|A Chain A, X-Ray Structure Of Maly From Escherichia Coli: A Pyridoxal-5'- Phosphate-Dependent Enzyme Acting As A Modulator In Mal Gene Expression Length = 390

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 124/295 (42%), Gaps = 38/295 (12%)
Query: 94  ARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLP---EKR---WEVDLDGVEA-LAD 146
           +  G  ++I  P Y  +          +E     ++P   EK+   W  D+  +EA LA 
Sbjct: 108 SETGEGVVIHTPAYDAF-------YKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK 160
Query: 147 ENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMG-V 205
                +++ +P NP G V++   L+ +A      G+ VI+DE++  + +G  P++P   V
Sbjct: 161 PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNV 220
Query: 206 FGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNS----GFVDSIKGCLNAASHPV 261
                 ++T G  SK + +P         +   GI++NS     ++ ++KG    +S  V
Sbjct: 221 ARGDWALLTSG--SKSFNIPA-------LTGAYGIIENSSSRDAYLSALKGRDGLSSPSV 271
Query: 262 TFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIK-EIPCITCPVKPQGAMFVMVKL 320
             + A +     +    +   +   LK+      +++    P +   + PQ      + L
Sbjct: 272 LALTAHIAAY--QQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQI-PQSTYLAWLDL 328
Query: 321 NVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGL 373
               +    DD      L ++E V I+PG T G   + ++R+      + LE G+
Sbjct: 329 RPLNI----DDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGV 379

>pdb|3EUC|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase (Yp_297314.1) From Ralstonia Eutropha Jmp134 At 2.05 A Resolution Length = 367

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 72/173 (41%), Gaps = 17/173 (9%)
Query: 75  DVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRW 134
           +V L  G  + I       ARPGA +  P PG+  Y   A  +   LE     L    R 
Sbjct: 87  EVLLGNGSDEIISXLALAAARPGAKVXAPVPGFVXYAXSAQFA--GLEFVGVPL----RA 140
Query: 135 EVDLD---GVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARN--LGIIVIADEV 189
           +  LD    + A A+     + +  P NP GN+F     + I R A+      +V+ DE 
Sbjct: 141 DFTLDRGAXLAAXAEHQPAIVYLAYPNNPTGNLFDAADXEAIVRAAQGSVCRSLVVVDEA 200
Query: 190 YNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQ 242
           Y   A  S     +  FG+++   T+  +     + G RLG+ V  DP  + Q
Sbjct: 201 YQPFAQESW-XSRLTDFGNLLVXRTVSKLG----LAGIRLGY-VAGDPQWLEQ 247

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	387
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	1e-157
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	1e-151
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	2e-72
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	3e-70
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	5e-69
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	1e-65
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	1e-59
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	2e-53
3ele_A	398	Amino transferase; RER070207001803, structural gen	6e-53
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	9e-53
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	1e-52
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	2e-51
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	3e-51
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	8e-51
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	8e-51
3nra_A	407	Aspartate aminotransferase; structural genomics, j	1e-50
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	6e-50
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	2e-49
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	6e-49
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	1e-48
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	1e-48
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	5e-48
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	4e-47
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	2e-46
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	9e-46
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	3e-43
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	1e-42
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	1e-41
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	1e-41
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	6e-41
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	9e-39
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	1e-36
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	3e-35
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	8e-35
1vp4_A	425	Aminotransferase, putative; structural genomics, j	1e-34
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	1e-34
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	1e-34
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	3e-34
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	1e-33
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	9e-33
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	1e-32
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	1e-32
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	1e-31
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	5e-31
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	5e-31
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	2e-30
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	5e-30
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	8e-29
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	2e-23
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	1e-22
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	3e-22
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	3e-22
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	4e-22
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	4e-22
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	2e-21
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	2e-21
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	3e-21
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	3e-21
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	5e-19
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	8e-19
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	8e-19
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	2e-18
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	5e-17
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	3e-16
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	5e-15
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	5e-14
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	7e-13
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	6e-12
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	4e-06
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	6e-05
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	1e-04
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	2e-04
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	6e-04

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* Length = 427

 Score =  449 bits (1157), Expect = e-157
 Identities = 135/357 (37%), Positives = 201/357 (56%), Gaps = 5/357 (1%)

Query: 29  VAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI 88
               A+ DAL +  YN Y+P++G  S+R  IA Y +      L  +DV LT GCSQAI++
Sbjct: 75  EVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCP-EAPLEAKDVILTSGCSQAIDL 133

Query: 89  SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADEN 148
            L+VLA PG NIL+PRPG+ LY+  A      +E + Y+LLPEK WE+DL  +E L DE 
Sbjct: 134 CLAVLANPGQNILVPRPGFSLYKTLAESMG--IEVKLYNLLPEKSWEIDLKQLEYLIDEK 191

Query: 149 TVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS 208
           T  +++ NP NPCG+VFS +HLQKI   A    + ++ADE+Y  + F    Y P+    +
Sbjct: 192 TACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLST 251

Query: 209 IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAV 268
            VP+++ G ++KRW+VPGWRLGW++  D   I  N    D +         P T +Q A+
Sbjct: 252 DVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNE-IRDGLVKLSQRILGPCTIVQGAL 310

Query: 269 PRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDI 328
             I+  T   F+   +  LK  AD+CY  +  IP +   V+P GAM++MV + +    + 
Sbjct: 311 KSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRP-VRPSGAMYLMVGIEMEHFPEF 369

Query: 329 GDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAK 385
            +D+EF  +L  E+SV  LP       N++R+        + +   RI+ FC++H  
Sbjct: 370 ENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVITVPEVMMLEACSRIQEFCEQHYH 426

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Length = 416

 Score =  433 bits (1115), Expect = e-151
 Identities = 114/367 (31%), Positives = 186/367 (50%), Gaps = 15/367 (4%)

Query: 29  VAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNR------DLPYKLSPEDVYLTLGC 82
                + +A+ +   N Y PT+G P AR  +A +         +L   +  ++V L  G 
Sbjct: 54  AQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGG 113

Query: 83  SQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVE 142
           S  I ++++ +   G   L+P+PG+P YE         +    Y+  PE  WE DLD + 
Sbjct: 114 SHGILMAITAICDAGDYALVPQPGFPHYETVCKAYG--IGMHFYNCRPENDWEADLDEIR 171

Query: 143 ALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFG----ST 198
            L D+ T  +++ NP NPCG+ FS +H++ I R A  L + + +DE+Y  + F     + 
Sbjct: 172 RLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNA 231

Query: 199 PYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAAS 258
            +  +  F + VP + LG  +K  +VPGWRLGWL+  DP+G      F++ +K       
Sbjct: 232 TFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGP--SFLEGLKRVGMLVC 289

Query: 259 HPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMV 318
            P T +QAA+   +  T +    +I+  ++E+A   Y  I E   +     P+GAM++M 
Sbjct: 290 GPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAP-TMPRGAMYLMS 348

Query: 319 KLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKA 378
           ++++    DI  D+EF  KL +EE+V +LPG       + R+          + +ERIKA
Sbjct: 349 RIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYREAVERIKA 408

Query: 379 FCQRHAK 385
           FCQRHA 
Sbjct: 409 FCQRHAA 415

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 Length = 406

 Score =  230 bits (589), Expect = 2e-72
 Identities = 100/365 (27%), Positives = 163/365 (44%), Gaps = 29/365 (7%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLS 91
           +A   A++  H N Y  + G+P  R+ I +   R     ++P+DV +T   ++A+++   
Sbjct: 61  EAYCKAIKEGH-NYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFG 119

Query: 92  VLARPGANILIPRPGYPLYE--IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENT 149
            L  PG  IL+P P YP Y   +   G         Y  + E+ W+ D+D +     + T
Sbjct: 120 ALLDPGDEILVPGPSYPPYTGLVKFYGGK----PVEYRTIEEEDWQPDIDDIRKKITDRT 175

Query: 150 VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSI 209
            AI +INP NP G ++  + L++I   A    I VI+DE+Y+ + +    ++  G     
Sbjct: 176 KAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGE-HISPGSLTKD 234

Query: 210 VPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVP 269
           VPVI +  +SK +   GWRLG++   DP   L      ++I         P T  Q A  
Sbjct: 235 VPVIVMNGLSKVYFATGWRLGYMYFVDPENKLS--EVREAIDRLARIRLCPNTPAQFAAI 292

Query: 270 RIVDETNEA------FFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVS 323
                          +  + +  LKE  D  Y+R+ EIP I+   KPQGA ++  K+ V 
Sbjct: 293 -------AGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGIST-TKPQGAFYIFPKIEV- 343

Query: 324 MLEDIGDDLEFCLKLAKEESVIILPGRTVGMK--NWLRIAFAAEPATLEDGLERIKAFCQ 381
                 +D EF L +     V+ + G   G       R  F      LE+ ++R + F +
Sbjct: 344 --GPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFMK 401

Query: 382 RHAKK 386
              K+
Sbjct: 402 ERLKE 406

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Length = 498

 Score =  227 bits (581), Expect = 3e-70
 Identities = 92/404 (22%), Positives = 162/404 (40%), Gaps = 53/404 (13%)

Query: 25  SDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLN-RDLPYKLSPEDVYLTLGCS 83
            D+      ++ A        YS + GV   R  +A Y+  RD      P+++YLT G S
Sbjct: 104 EDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGAS 163

Query: 84  QAIEISLSVLARPG----ANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLD 139
             I   L +L   G      ++IP P YPLY   A  S  +    +Y L  E  W ++++
Sbjct: 164 DGISTILKILVSGGGKSRTGVMIPIPQYPLY--SAVISELDAIQVNYYLDEENCWALNVN 221

Query: 140 GVEALADENTV-----AIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLA 194
            +     E         + IINPGNP G V S + ++ +   A    + ++ADEVY    
Sbjct: 222 ELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNV 281

Query: 195 F-GSTPYVPM--------GVFGSIVPVITLGSISKRWIVP-GWRLGWLVTSDPNGILQNS 244
           +     +             + S V + +  S SK ++   G+R G++   + +      
Sbjct: 282 YSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHP----- 336

Query: 245 GFVDSIKGCLNAASH---PVTFIQAAV------PRIVDETNEAF---FAKIIGLLKETAD 292
              +     +   S    P    QAA+      P   +E+ E F      ++G L + A 
Sbjct: 337 ---EIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAK 393

Query: 293 ICYERIKEIPCITCPVKPQGAMFVMVKLNVSML-------EDIGDDLEFCLKLAKEESVI 345
           +  +   ++P I C    QGAM+   ++ +            +  D+ +C+KL +E  + 
Sbjct: 394 LTEDLFNQVPGIHC-NPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGIC 452

Query: 346 ILPGRTVGMKNW---LRIAFAAEPATLEDGLERIKAFCQRHAKK 386
           ++PG   G +      R+        L+  L+++K F     +K
Sbjct: 453 VVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVKDFHINFLEK 496

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500

 Score =  224 bits (573), Expect = 5e-69
 Identities = 82/392 (20%), Positives = 162/392 (41%), Gaps = 33/392 (8%)

Query: 25  SDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQ 84
           +DS      ++  +       YS + G+   R  IA  +     +  + +D++LT G S 
Sbjct: 109 ADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASP 168

Query: 85  AIEISLSVLAR-PGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEA 143
            + + + +L R     IL+P P YPLY   A+ + +      Y L     W ++   V+ 
Sbjct: 169 GVHLMMQLLIRNEKDGILVPIPQYPLY--SASIALHGGALVPYYLNESTGWGLETSDVKK 226

Query: 144 LADE------NTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAF-G 196
             ++      N  A+V+INPGNP G V + ++   I +  +N G++++ADEVY    +  
Sbjct: 227 QLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVD 286

Query: 197 STPYV-------PMGVFGSIVPVITLGSISKRWI-VPGWRLGWL-VTSDPNGILQNSGFV 247
           +  +         +G     +P+++  S+SK +    G R G+  +T     + +    +
Sbjct: 287 NKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKI 346

Query: 248 DSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFA---KIIGLLKETADICYERIKEIPCI 304
            S+  C N     +  +    P+  DE+  ++ A    I+  L   A        ++  I
Sbjct: 347 ASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGI 406

Query: 305 TCPVKPQGAMFVMVKLNVSM-------LEDIGDDLEFCLKLAKEESVIILPGRTVGMKNW 357
           TC  + +GAM+V  ++ +           +   D  + L+L +   ++++PG   G    
Sbjct: 407 TC-NEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPG 465

Query: 358 ---LRIAFAAEPATLEDGLERIKAFCQRHAKK 386
               R     +   +   + R   F +    +
Sbjct: 466 TWHFRCTILPQEDKIPAVISRFTVFHEAFMSE 497

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375

 Score =  212 bits (541), Expect = 1e-65
 Identities = 82/362 (22%), Positives = 147/362 (40%), Gaps = 40/362 (11%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLS 91
           +     L+    N Y    G P+ ++ ++          + PE +  T G + A  + L 
Sbjct: 46  EDFYKKLQGTKLN-YGWIEGSPAFKKSVSQLYTG-----VKPEQILQTNGATGANLLVLY 99

Query: 92  VLARPGANILIPRPGYPLYE--IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENT 149
            L  PG +++   P Y        + G+    E   + +  E  W  DL+ +  L    T
Sbjct: 100 SLIEPGDHVISLYPTYQQLYDIPKSLGA----EVDLWQIEEENGWLPDLEKLRQLIRPTT 155

Query: 150 VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSI 209
             I I N  NP G V    +L+++   A  +G  +++DEVY   +    P +   V+   
Sbjct: 156 KMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSII-EVYDK- 213

Query: 210 VPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASH----PVTFIQ 265
              I + S+SK + +PG R+GW+  +                   +   +       F  
Sbjct: 214 --GIAVNSLSKTYSLPGIRIGWVAANH-----------QVTDILRDYRDYTMICAGVFDD 260

Query: 266 -AAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSM 324
             A   +     +    +   +L+E   I  + I+E P ++  ++P       VK+ V M
Sbjct: 261 LVAQ--LALAHYQEILERNRHILEENLAILDQWIEEEPLVSY-IRPAVVSTSFVKIAVDM 317

Query: 325 LEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHA 384
                   +FCL+L +E  V+++PG       ++R+ FA E  TL  GLE++  F +R  
Sbjct: 318 -----PMEDFCLQLLQEHGVLLVPGNRFERDGYVRLGFACEQETLIKGLEKLSQFLRRFD 372

Query: 385 KK 386
           K+
Sbjct: 373 KE 374

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Length = 391

 Score =  196 bits (502), Expect = 1e-59
 Identities = 83/367 (22%), Positives = 145/367 (39%), Gaps = 42/367 (11%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLS 91
           +A+  +L T     Y+  LG+P+ R+ IA          L P  V +T G S    ++ +
Sbjct: 51  EALAKSLETDALG-YTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFT 109

Query: 92  VLARPGANILIPRPGYPLYE--IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENT 149
            L   G  + I  PGYP Y   + A G    L        PE R +         A  + 
Sbjct: 110 ALFDSGDRVGIGAPGYPSYRQILRALG----LVPVDLPTAPENRLQPV---PADFAGLDL 162

Query: 150 VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSI 209
             +++ +P NP G +  +  +  +   A+  G   I+DE+Y+ + + +     + +    
Sbjct: 163 AGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDE- 221

Query: 210 VPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQ-AAV 268
                + S SK + + GWR+GW+V   P   ++    V+ I    N         Q AA+
Sbjct: 222 --CYVINSFSKYFSMTGWRVGWMVV--PEDQVRV---VERIAQ--NMFICAPHASQVAAL 272

Query: 269 -----PRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVS 323
                   +    + +        K    +  ER+ +         P GA +V    +VS
Sbjct: 273 AALDCDAELQANLDVY--------KANRKLMLERLPKAGFTRIA-PPDGAFYVYA--DVS 321

Query: 324 MLEDIGDDLEFCLKLAKEESVIILPGR---TVGMKNWLRIAFAAEPATLEDGLERIKAFC 380
            L    D   F  ++ ++  V + PG           LR ++A   A +E+GL+R++AF 
Sbjct: 322 DL--TDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYARATADIEEGLDRLEAFM 379

Query: 381 QRHAKKQ 387
           Q   +  
Sbjct: 380 QARGEGH 386

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437

 Score =  182 bits (463), Expect = 2e-53
 Identities = 62/384 (16%), Positives = 109/384 (28%), Gaps = 44/384 (11%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLS 91
           +  +  LR    + Y    G+P  ++  + +    +   +       T+G  Q   +S  
Sbjct: 64  ETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFL 123

Query: 92  VLAR----PGANILIPRPGYPLYE--IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALA 145
           V  R         L   PG+ L +      G     +   +DL   +  ++       L 
Sbjct: 124 VANRTHKNREYGTLFIDPGFNLNKLQCRILGQ----KFESFDLFEYRGEKLREKLESYLQ 179

Query: 146 DENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV 205
                +I+  NP NP     + + L+ I   A    +IVI D  Y  + F    Y   G 
Sbjct: 180 TGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRK-DYSHPGE 238

Query: 206 FGSIVP-------VITLGSISKRWIVPGWRLGWLVTSDP-----NGILQNSGFVDSIKGC 253
                         I   S SK +   G R+G L+ S          L+ S         
Sbjct: 239 PLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEA 298

Query: 254 L------NAASHPVTFIQAAVPRIVDETNEA--FFAKIIGLLKETADICYERIKE----- 300
           L        +S      Q  +  ++   N+    F   +      A I  +   +     
Sbjct: 299 LSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDNGFNI 358

Query: 301 IPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMK--NWL 358
           +       +P    F        M     D  +   K  +     I    T   +     
Sbjct: 359 VYDKDGN-EPLADGFYFTVGYKGM-----DSSKLIEKFVRYGMCAITLKTTGSKRNEAMR 412

Query: 359 RIAFAAEPATLEDGLERIKAFCQR 382
                   +   D  +R++     
Sbjct: 413 ICTSLLPESQFPDLEKRLQMLNAE 436

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Length = 398

 Score =  179 bits (457), Expect = 6e-53
 Identities = 80/375 (21%), Positives = 156/375 (41%), Gaps = 52/375 (13%)

Query: 32  DAVVDALRTAH---YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI 88
           D + + +        + Y+   G    R  IA++LN       + +++Y+T+G + ++ I
Sbjct: 55  DTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSI 114

Query: 89  SLSVLARPGAN-ILIPRPGYPLYE--IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALA 145
               L     +  +   P +P Y+  ++AAG+             E  +++D D +E   
Sbjct: 115 CFRALTSDAYDEFITIAPYFPEYKVFVNAAGA----RLVEVPADTE-HFQIDFDALEERI 169

Query: 146 DENTVAIVIINPGNPCGNVFSYQHLQKIARTAR------NLGIIVIADEVYNHLAFGSTP 199
           + +T  ++I +P NP G V+S + ++K++             I +IADE Y  + +    
Sbjct: 170 NAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYD--- 226

Query: 200 YVPMGVFGSIVP-----VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL 254
               G+    V       +   S SK   +PG R+G+++   P+ +   +    ++ G  
Sbjct: 227 ----GIKVPFVTKYYDNTLVCYSYSKSLSLPGERIGYVLV--PDEVYDKAELYAAVCGAG 280

Query: 255 NAASH--PVTFIQAAVPRIVDETN--EAFFAKIIGLLKETADICYERIKEIPCITCPVKP 310
            A  +    +  Q  + +    T    A+        KE  D+ YE +  I    C  KP
Sbjct: 281 RALGYVCAPSLFQKMIVKCQGATGDINAY--------KENRDLLYEGLTRIG-YHC-FKP 330

Query: 311 QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLE 370
            GA ++ VK          D   FC + AKEE V+I+     G   W+RI++  +   ++
Sbjct: 331 DGAFYMFVKAL------EDDSNAFC-EKAKEEDVLIVAADGFGCPGWVRISYCVDREMIK 383

Query: 371 DGLERIKAFCQRHAK 385
             +   +   +++ K
Sbjct: 384 HSMPAFEKIYKKYNK 398

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447

 Score =  180 bits (459), Expect = 9e-53
 Identities = 87/379 (22%), Positives = 136/379 (35%), Gaps = 43/379 (11%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLS 91
                AL     N YSPT G PS    +    +     +L  E+V +T G ++ I   L 
Sbjct: 77  KEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLM 136

Query: 92  VLARPGANILIPRPGYPLYE--IHAAG------SNNNLEARHYDLLPEKRWEVDLDGVEA 143
            L   G  +++  P +  Y   I   G        N  +         + W +D +  E 
Sbjct: 137 GLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEK 196

Query: 144 LADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPM 203
                T A++I  P NP G VF+ + L  +        +++I+DEVY HL F  +     
Sbjct: 197 AITSKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIA 256

Query: 204 GVFGSIVP-----VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAAS 258
               ++ P      +T+GS  K +   GWR+GW V S    +L                 
Sbjct: 257 ----TLSPEIGQLTLTVGSAGKSFAATGWRIGW-VLSLNAELLSY---AAKAHT--RICF 306

Query: 259 HPVTFIQAAVPR-IVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVM 317
              + +Q A    I D     +F K+         I      E+  +     P+G  FV+
Sbjct: 307 ASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDELG-LPY-TAPEGTYFVL 364

Query: 318 V----------KLNVSMLEDIGDDLEFCLKLAKEESVIILPG-------RTVGMKNWLRI 360
           V                + + G D      L  E  V+ +P             +N LR 
Sbjct: 365 VDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRF 424

Query: 361 AFAAEPATLEDGLERIKAF 379
           A   + A LE+ +ER+K  
Sbjct: 425 AVCKDDAYLENAVERLKLL 443

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409

 Score =  179 bits (456), Expect = 1e-52
 Identities = 87/388 (22%), Positives = 148/388 (38%), Gaps = 72/388 (18%)

Query: 32  DAVVDALRTAH--YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEIS 89
           +   + +         YS + G+   R   A Y  R     + PE+V +T G S+AI  S
Sbjct: 59  EVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFS 118

Query: 90  LSVLARPGANILIPRPGYPLYE--IHAAGSN-NNLEARHYD--LLPEKRWEVDLDGVEAL 144
            +V+A PG  IL+  P Y  Y      AG     +  R  +   +P+         +E+ 
Sbjct: 119 FAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQN--------LESF 170

Query: 145 ADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMG 204
            +E T  IV+ NP NP G V+    ++ +   A   G+ +I DEVY+ + F        G
Sbjct: 171 INERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFR-------G 223

Query: 205 VFGSIVP-----VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLN---A 256
            F S +      V+ + S+SK++   G R+G L+T   N  L        I   +     
Sbjct: 224 EFASALSIESDKVVVIDSVSKKFSACGARVGCLIT--RNEEL--------ISHAMKLAQG 273

Query: 257 ASHPVTFIQ-AAV------PRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVK 309
              P    Q  +V          D   E +        +E  +   ++++E        K
Sbjct: 274 RLAPPLLEQIGSVGLLNLDDSFFDFVRETY--------RERVETVLKKLEEHGLKRFT-K 324

Query: 310 PQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKE-----ESVIILPGRTVGM-----KNWLR 359
           P GA ++  +L       + D  EF   +  +     E+ ++ P R   +     K  +R
Sbjct: 325 PSGAFYITAELP------VEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIR 378

Query: 360 IAFAAEPATLEDGLERIKAFCQRHAKKQ 387
           IA   E   L   ++ +    +     +
Sbjct: 379 IACVLEKDLLSRAIDVLMEGLKMFCSSR 406

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 Length = 386

 Score =  175 bits (447), Expect = 2e-51
 Identities = 79/365 (21%), Positives = 142/365 (38%), Gaps = 45/365 (12%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIEISL 90
           + +   +     N Y+P  GV + R  IA    R   Y+   + D+ +T G ++A+  ++
Sbjct: 50  ERLAHHVA-QGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAI 108

Query: 91  SVLARPGANILIPRPGYPLYE--IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADEN 148
           + L R G  ++   P Y  Y   I  +G       +   L P   + VD     AL  E 
Sbjct: 109 TALVRNGDEVICFDPSYDSYAPAIALSGG----IVKRMALQPP-HFRVDWQEFAALLSER 163

Query: 149 TVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS 208
           T  +++  P NP   V+       + +      I VI+DEVY H+ F    +  +     
Sbjct: 164 TRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAH-- 221

Query: 209 IVP-----VITLGSISKRWIVPGWRLGWLVTSDP-----NGILQNSGFVDSIKGCLNAAS 258
             P      + + S  K + + GW++G+ V   P       + Q   F            
Sbjct: 222 --PQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYLTFS----------- 268

Query: 259 HPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMV 318
              T  Q A+  ++       +  +    ++  DI    + E   +   +  +G  F++V
Sbjct: 269 -VNTPAQLALADML-RAEPEHYLALPDFYRQKRDILVNALNESR-LEI-LPCEGTYFLLV 324

Query: 319 KLNVSMLEDIGDDLEFCLKLAKEESVIILPG----RTVGMKNWLRIAFAAEPATLEDGLE 374
             + S +  + DD+EFC  L +E  V  +P             +R+ FA + +TL    E
Sbjct: 325 --DYSAVSTL-DDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAE 381

Query: 375 RIKAF 379
           R++  
Sbjct: 382 RLRQL 386

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} Length = 411

 Score =  175 bits (447), Expect = 3e-51
 Identities = 94/381 (24%), Positives = 146/381 (38%), Gaps = 54/381 (14%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIEISL 90
            A  DA+     N Y P  G    RR IA    R       PE +V +T+G ++AI  ++
Sbjct: 45  QAAQDAIA-GGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAV 103

Query: 91  SVLARPGANILIPRPGYPLYE--IHAAGSNNNLEARHYDLLPEKR-WEVDLDGVEALADE 147
             L  PG+ +L+  P Y  Y   +  AG+          L+P+ R + +D D +      
Sbjct: 104 LGLVEPGSEVLLIEPFYDSYSPVVAMAGA----HRVTVPLVPDGRGFALDADALRRAVTP 159

Query: 148 NTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFG 207
            T A++I +P NP G V S   L  IA  A    ++VI DEVY HL F    ++P+  F 
Sbjct: 160 RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGF- 218

Query: 208 SIVP-----VITLGSISKRWIVPGWRLGWLVTSDP-----NGILQNSGFVDSIKGCLNAA 257
                     IT+ S +K +   GW++GW               Q   +V          
Sbjct: 219 ---DGMAERTITISSAAKMFNCTGWKIGWACGPAELIAGVRAAKQYLSYV---------- 265

Query: 258 SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVM 317
                  Q AV   + +T +A+ A +   L+   D     + EI          G  F+ 
Sbjct: 266 --GGAPFQPAVALAL-DTEDAWVAALRNSLRARRDRLAAGLTEIG-FAV-HDSYGTYFLC 320

Query: 318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPG-------------RTVGMKNWLRIAFAA 364
              +   L    D  EFC  L ++  V  +P              +     + +R  F  
Sbjct: 321 A--DPRPL-GYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCK 377

Query: 365 EPATLEDGLERIKAFCQRHAK 385
              TL++ + R+    +R A 
Sbjct: 378 RDDTLDEAIRRLSVLAERPAT 398

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435

 Score =  175 bits (445), Expect = 8e-51
 Identities = 76/371 (20%), Positives = 143/371 (38%), Gaps = 53/371 (14%)

Query: 46  YSPTLGVPSARRGIADYLN--RDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIP 103
           +    G+P+ ++ + D++   R       P  + LT G + A E  +  LA PG  +LIP
Sbjct: 82  FQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIP 141

Query: 104 RPGYPLYE-------------IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTV 150
            P YP ++             IH   SN       + +      E      E   +    
Sbjct: 142 TPYYPGFDRDLKWRTGVEIVPIHCTSSNG------FQITETA-LEEAYQEAEK-RNLRVK 193

Query: 151 AIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIV 210
            +++ NP NP G   +   L  +     + GI +I+DE+Y+  AF S  ++ +       
Sbjct: 194 GVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDR 253

Query: 211 P----------VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIK--GCLNAAS 258
                      V  + S+SK   +PG+R+G + +        +   V +          S
Sbjct: 254 NCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYS-------NDDMVVAAATKMSSFGLVS 306

Query: 259 HPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE--IPCITCPVKPQGAMFV 316
                + +A+     +  + + A+    LK+        +++  I C    +     +F 
Sbjct: 307 SQTQHLLSAMLSD-KKLTKNYIAENHKRLKQRQKKLVSGLQKSGISC----LNGNAGLFC 361

Query: 317 MVKLNVSMLEDIGD-DLEFCLKLAKEESVIILPGRTVGMK--NWLRIAFAAEP-ATLEDG 372
            V +   +  +  + ++E   K+  E  + I PG +       W R+ FA  P  TL+  
Sbjct: 362 WVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLA 421

Query: 373 LERIKAFCQRH 383
           ++R+KAF   +
Sbjct: 422 MQRLKAFVGEY 432

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428

 Score =  175 bits (445), Expect = 8e-51
 Identities = 69/369 (18%), Positives = 135/369 (36%), Gaps = 51/369 (13%)

Query: 46  YSPTLGVPSARRGIADYLNR--DLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIP 103
           +    G+P  R+ IA ++ +      +  PE V +  G + A E  +  LA PG   L+P
Sbjct: 79  FQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVP 138

Query: 104 RPGYPLYE-------------IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTV 150
            P YP +              IH   SNN      + +  +   +   +  +  ++    
Sbjct: 139 SPYYPAFNRDLRWRTGVQLIPIHCESSNN------FKITSKA-VKEAYENAQK-SNIKVK 190

Query: 151 AIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIV 210
            +++ NP NP G       L+ +        I ++ DE+Y    F +  +V +       
Sbjct: 191 GLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQ 250

Query: 211 P--------VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIK--GCLNAASHP 260
                    V  + S+SK   +PG+R+G + +        N   V+  +        S  
Sbjct: 251 EMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYS-------FNDDVVNCARKMSSFGLVSTQ 303

Query: 261 VTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE--IPCITCPVKPQGAMFVMV 318
             +  AA+    ++  + F  +    L +        ++   I C    +K    +F  +
Sbjct: 304 TQYFLAAMLS-DEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKC----LKNNAGLFCWM 358

Query: 319 KLNVSMLEDIG-DDLEFCLKLAKEESVIILPGRTVGMK--NWLRIAFAA-EPATLEDGLE 374
            L   + E     ++     +  +  + + PG +   +   W R+ FA  +  T++  L 
Sbjct: 359 DLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALA 418

Query: 375 RIKAFCQRH 383
           RI+ F    
Sbjct: 419 RIRRFVGVE 427

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Length = 407

 Score =  173 bits (442), Expect = 1e-50
 Identities = 65/374 (17%), Positives = 117/374 (31%), Gaps = 49/374 (13%)

Query: 31  EDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPED-VYLTLGCSQAIEIS 89
           +              Y+   G    R  +A  L       +   D + +T G   A+ ++
Sbjct: 60  DLFSAGVQSGGVQA-YTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLA 118

Query: 90  LSVLARPGANILIPRPGYPLYE--IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE 147
           ++     G  + I +P Y      +             Y    E R  +DL G+E     
Sbjct: 119 VAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA 178

Query: 148 NTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFG 207
                +  NP NP G V+S + + +IA  A   G  VIAD++Y+ L +    Y       
Sbjct: 179 GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTH---LR 235

Query: 208 SIVP-----VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASH--- 259
           +        V+T+   SK   + G+RLG              G    I       +    
Sbjct: 236 AEAAVDAENVVTIMGPSKTESLSGYRLGVAF-----------GSRAIIARMEKLQAIVSL 284

Query: 260 -PVTFIQ-AAV------PRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ 311
               + Q          P  +++             +   D     ++    +     PQ
Sbjct: 285 RAAGYSQAVLRGWFDEAPGWMEDRIARH--------QAIRDELLHVLRGCEGVFAR-TPQ 335

Query: 312 GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG--MKNWLRIAFAAEPATL 369
              ++     +  L       EF   L  +  V++ PG        + +R+ F+ +    
Sbjct: 336 AGSYLFP--RLPKL--AVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAA 391

Query: 370 EDGLERIKAFCQRH 383
                RI    +R+
Sbjct: 392 VAAARRIVTLVERY 405

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410

 Score =  172 bits (438), Expect = 6e-50
 Identities = 80/389 (20%), Positives = 145/389 (37%), Gaps = 63/389 (16%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIEISL 90
           + +  A    + N Y+   G P+  + ++    +    ++ P  ++ + +G   ++  S+
Sbjct: 43  EELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSI 102

Query: 91  SVLARPGANILIPRPGYPLYE--IHAAGSNNNLEARHYDLLPEKR---------WEVDLD 139
             L  PG  ++I  P Y  YE  +  AG+          L  +           W  D  
Sbjct: 103 QGLVDPGDEVIIMVPFYDCYEPMVRMAGA----VPVFIPLRSKPTDGMKWTSSDWTFDPR 158

Query: 140 GVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTP 199
            +E+     T AI++  P NP G V++ Q LQ IA        + I+DEVY  L +    
Sbjct: 159 ELESKFSSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHT 218

Query: 200 YVPMGVFGSIVP-----VITLGSISKRWIVPGWRLGWLVTSDP-----NGILQNSGFVDS 249
           +V +       P      IT+GS  K + V GW+LGW +           + QNS +   
Sbjct: 219 HVKIATL----PGMWERTITIGSAGKTFSVTGWKLGWSIGPAHLIKHLQTVQQNSFY--- 271

Query: 250 IKGCLNAASHPVTFIQAAV------PRIVDETNEAFFAKIIGLLKETADICYERIKEIPC 303
                       T +QAA+           +  E +F  +   L+   D     +  +  
Sbjct: 272 ---------TCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVG- 321

Query: 304 ITCPVKPQGAMFVMV---KLNVSM---LEDIGDDLEFCLKLAKEESVIILPG-------R 350
           +   + P G  F++     L   +     D   D +F   + K + +  +P         
Sbjct: 322 LKP-IVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKS 380

Query: 351 TVGMKNWLRIAFAAEPATLEDGLERIKAF 379
               +  +R  F  + +TL+   E  +A+
Sbjct: 381 KPHFEKLVRFCFIKKDSTLDAAEEIFRAW 409

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429

 Score =  171 bits (435), Expect = 2e-49
 Identities = 81/391 (20%), Positives = 153/391 (39%), Gaps = 65/391 (16%)

Query: 32  DAVVDALRT--AHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIEI 88
           +A+  A  +     N Y+   G P   + ++   ++ +   ++P  +V +T+G  +A+  
Sbjct: 57  NALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYA 116

Query: 89  SLSVLARPGANILIPRPGYPLYE--IHAAGSNNNLEARHYDLLPEKR--------WEVDL 138
           ++      G  ++I  P +  YE  + AAG       R   L P K         W +D 
Sbjct: 117 TIQGHVDEGDEVIIIEPFFDCYEPMVKAAGG----IPRFIPLKPNKTGGTISSADWVLDN 172

Query: 139 DGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGST 198
           + +EAL +E T  I+I  P NP G V     L+ +A   +   ++ ++DEVY H+ F   
Sbjct: 173 NELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPF 232

Query: 199 PYVPMGVFGSIVP-----VITLGSISKRWIVPGWRLGWLVTSDP-----NGILQNSGFVD 248
            ++ +       P      IT+GS  K + + GW++GW    +        + QN  +  
Sbjct: 233 EHIRICTL----PGMWERTITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVY-- 286

Query: 249 SIKGCLNAASHPVTFIQAAVPRIVDETNEA------FFAKIIGLLKETADICYERIKEIP 302
                        T IQ A+    +   +       +F  I G L    D     + E+ 
Sbjct: 287 ----------TCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVG 336

Query: 303 CITCPVKPQGAMFVMV-------KLNVSMLEDIGDDLEFCLKLAKEESVIILPG------ 349
            +     PQG  F++        K++++   D   D  F   + K   +  +P       
Sbjct: 337 -MNP-TVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSE 394

Query: 350 -RTVGMKNWLRIAFAAEPATLEDGLERIKAF 379
                 ++++R  F  +   L+   E ++ +
Sbjct: 395 PNKHLGEDFVRYCFFKKDENLQKAAEILRKW 425

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} Length = 370

 Score =  168 bits (428), Expect = 6e-49
 Identities = 87/367 (23%), Positives = 151/367 (41%), Gaps = 61/367 (16%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLS 91
           D  + +L+      Y+ + G+   R  I++         + P+++ +T G S  +  +LS
Sbjct: 49  DEGIKSLK-EGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALS 107

Query: 92  VLARPGANILIPRPGYPLYE--IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENT 149
            +   G  +LI  P YP Y+  I   G+    +    D   E         +E    + T
Sbjct: 108 SIIDDGDEVLIQNPCYPCYKNFIRFLGA----KPVFCDFTVES--------LEEALSDKT 155

Query: 150 VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSI 209
            AI+I +P NP G V      ++I   A      +I+DE+YN L +    Y  +    ++
Sbjct: 156 KAIIINSPSNPLGEVID----REIYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENL 211

Query: 210 VPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASH----PVTFIQ 265
              I +   SK + + GWR+G++++   + I         I+  L    +      T  Q
Sbjct: 212 EKTILINGFSKLYAMTGWRIGYVIS--NDEI---------IEAILKLQQNLFISAPTISQ 260

Query: 266 -AAVP-------RIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVM 317
            AA+        R ++   + F             +  + +K+         P GA +V 
Sbjct: 261 YAALKAFEKETEREINSMIKEF--------DRRRRLVLKYVKDFG-WEVN-NPIGAYYVF 310

Query: 318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLER 375
              N+       D  EF  KL KE+ V + PG   G   KN++RI++A     +++GLER
Sbjct: 311 P--NIGE-----DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYANSYENIKEGLER 363

Query: 376 IKAFCQR 382
           IK F  +
Sbjct: 364 IKEFLNK 370

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Length = 381

 Score =  168 bits (427), Expect = 1e-48
 Identities = 90/371 (24%), Positives = 152/371 (40%), Gaps = 55/371 (14%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLS 91
           +AV  AL     + Y+P  G+P+ R  +A+    +      PE V +T G ++A+ + L 
Sbjct: 45  EAVRRAL--GRQDQYAPPAGLPALREALAEEFAVE------PESVVVTSGATEALYVLLQ 96

Query: 92  VLARPGANILIPRPGYPLYE--IHAAGSNNNLEARHYDL-LPEKRWEVDLDGVEALADEN 148
            L  PG  +++  P + +Y      AG+    +AR   L L  + + +DL  +E      
Sbjct: 97  SLVGPGDEVVVLEPFFDVYLPDAFLAGA----KARLVRLDLTPEGFRLDLSALEKALTPR 152

Query: 149 TVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS 208
           T A+++  P NP G VF  + L+ IAR AR   + +I+DEVY+ L +G  P         
Sbjct: 153 TRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLR----E 208

Query: 209 IVP--VITLGSISKRWIVPGWRLGWLVTSDP-----NGILQNSGFVDSIKGCLNAASHPV 261
             P    T+GS  KR    G+R+GW+V          G+ Q + F               
Sbjct: 209 FAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTSF------------SAP 256

Query: 262 TFIQAAVPR-IVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKL 320
           T +QA V   +     E F+  +    +   D+    ++ +  +     P+G  F+M   
Sbjct: 257 TPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMG-LRV-YVPEGTYFLMA-- 312

Query: 321 NVSMLEDIGDDLEFCLKLAKEESVIILPG----RTVGMKNWLRIAFAAEPATLEDGLERI 376
                 ++        +L +E  V ++P          K+  R AF      L   LER+
Sbjct: 313 ------ELPG--WDAFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERL 364

Query: 377 KAFCQRHAKKQ 387
                   + +
Sbjct: 365 GRVVNSPREAE 375

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417

 Score =  168 bits (428), Expect = 1e-48
 Identities = 69/383 (18%), Positives = 139/383 (36%), Gaps = 45/383 (11%)

Query: 31  EDAVVDALRTAHYNC----YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI 86
           +  + D + +         Y    G  +    +A  L   L + + P+++ LT G   A 
Sbjct: 52  QTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAF 111

Query: 87  EISLSVLARPGAN---ILIPRPGYPLYE--IHAAGSNNNLEAR--HYDLLPEKRWEVDLD 139
               ++ A   A+     +  P  P Y     +   ++   +   + +LLPE +++  +D
Sbjct: 112 FYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVD 171

Query: 140 GVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTP 199
                  E T  I +  P NP GNV + + L K+ R A    I ++ D  Y     G   
Sbjct: 172 FEHLHIGEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPG-II 230

Query: 200 YVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASH 259
           +       +   +I   S+SK   +PG R G ++ +D    +     + ++ G    +  
Sbjct: 231 FSEARPLWN-PNIILCMSLSK-LGLPGSRCGIIIANDK--TITA---IANMNG--IISLA 281

Query: 260 PVTFIQAAVPRIVDETNEAFFAKIIGLLKET----ADICYERIKE---IPCITCPVKPQG 312
           P     A +  ++             ++K             I+            KP+G
Sbjct: 282 PGGMGPAMMCEMI--KRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLI-HKPEG 338

Query: 313 AMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPG---------RTVGMKNWLRIAFA 363
           A+F+ +       +D+    E   +  K   V+++PG                 +R+ + 
Sbjct: 339 AIFLWLW-----FKDLPITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYV 393

Query: 364 AEPATLEDGLERIKAFCQRHAKK 386
            EP  +E G++ +    +R  ++
Sbjct: 394 PEPDKIEAGVKILAEEIERAWRE 416

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* Length = 422

 Score =  167 bits (425), Expect = 5e-48
 Identities = 79/391 (20%), Positives = 152/391 (38%), Gaps = 63/391 (16%)

Query: 32  DAVVDALRTAH-YNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIEIS 89
           +A   A+      N Y+ T G P   + +A +    L  ++ P  +V +T+G   A+  +
Sbjct: 48  EAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTA 107

Query: 90  LSVLARPGANILIPRPGYPLYE--IHAAG------SNNNLEARHYDLLPEKRWEVDLDGV 141
              L   G  ++I  P +  YE     AG      S      ++ +L     W++D   +
Sbjct: 108 FQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMEL 167

Query: 142 EALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYV 201
                  T A+V+  P NP G VFS + L+ +A   +   ++ I DEVY  + +    ++
Sbjct: 168 AGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHI 227

Query: 202 PMGVFGSIVP-----VITLGSISKRWIVPGWRLGWLVTSDP-----NGILQNSGFVDSIK 251
            +       P      +T+GS  K +   GW++GW++  D        + QNS F     
Sbjct: 228 SIASL----PGMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFH---- 279

Query: 252 GCLNAASHPVTFIQAAV------PRIVDETNEAFFAKIIGLLKETADICYERIKEI--PC 303
                        QAAV       +++     ++F +    ++   D     ++ +    
Sbjct: 280 -----CPTQ---SQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKP 331

Query: 304 ITCPVKPQGAMFVMV--------KLNVSMLEDIGDDLEFCLKLAKEESVIILPG------ 349
           I     PQG+ F++           ++    D   D  F   + K + ++ +P       
Sbjct: 332 I----IPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSV 387

Query: 350 -RTVGMKNWLRIAFAAEPATLEDGLERIKAF 379
                  +++R  F  + ATL+   E+++ +
Sbjct: 388 PHQKHFDHYIRFCFVKDEATLQAMDEKLRKW 418

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444

 Score =  165 bits (420), Expect = 4e-47
 Identities = 69/373 (18%), Positives = 130/373 (34%), Gaps = 54/373 (14%)

Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGAN------ 99
           YS   G  +    +  + NR   + L+ E++ LT G   A     ++      N      
Sbjct: 79  YSNPQGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDK 138

Query: 100 ---------ILIPRPGYPLYE--IHAAGSNNNLEARHYDLLPEK-----RWEVDLDGVEA 143
                    +L   P Y  Y            +     ++  +      ++ VD + +E 
Sbjct: 139 ESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALEN 198

Query: 144 LA---DENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPY 200
           L    +    AI    P NP GNV + + +  +A  A+   I +I D  Y          
Sbjct: 199 LPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYS 258

Query: 201 VPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHP 260
                + +    I   S+SK   +PG R G +V      +++    V ++         P
Sbjct: 259 DAHLNWDN--NTILCFSLSK-IGLPGMRTGIIVA--DAKVIEA---VSAMNA--VVNLAP 308

Query: 261 VTFIQAAVPRIV--DETNEAFFAKIIGLLKETADICYERIKEI-PCITCPV-KPQGAMFV 316
             F  A    +V  D   +    +I    ++ A +  + +K+        + KP+GA+F+
Sbjct: 309 TRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFL 368

Query: 317 MVKLNVSMLEDIGDDLEFCLKLAKEESVIILPG----------RTVGMKNWLRIAFAAEP 366
            +       +D+        +  K +  +I+P                   +R++ AA+ 
Sbjct: 369 WLW-----FKDLPISTLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAADE 423

Query: 367 ATLEDGLERIKAF 379
            TL DG++ I   
Sbjct: 424 QTLIDGIKVIGEV 436

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Length = 389

 Score =  162 bits (412), Expect = 2e-46
 Identities = 87/372 (23%), Positives = 161/372 (43%), Gaps = 51/372 (13%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRD--LPYKLSPEDVYLTLGCSQAIEIS 89
           +   +AL       Y P +G+   R  IA+ L +   +      E + + LG +QA  + 
Sbjct: 46  EYAKEALD-KGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTE-IMVLLGANQAFLMG 103

Query: 90  LSVLARPGANILIPRPGYPLYE--IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE 147
           LS   + G  +LIP P +  Y   +  AG     +        E  + +++D ++    +
Sbjct: 104 LSAFLKDGEEVLIPTPAFVSYAPAVILAGG----KPVEVPTYEEDEFRLNVDELKKYVTD 159

Query: 148 NTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFG 207
            T A++I +P NP G V + + L++IA       +IVI+DEVY H  +    +  +    
Sbjct: 160 KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLD 219

Query: 208 SIVP-VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLN----AASHPVT 262
            +    IT+   SK + + GWRLG++    P+ I         I+  +      A+ PVT
Sbjct: 220 GMFERTITVNGFSKTFAMTGWRLGFVAA--PSWI---------IERMVKFQMYNATCPVT 268

Query: 263 FIQ-AAV--------PRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGA 313
           FIQ AA          + V+E  + +             + ++R+ E+  +    KP+GA
Sbjct: 269 FIQYAAAKALKDERSWKAVEEMRKEY--------DRRRKLVWKRLNEMG-LPTV-KPKGA 318

Query: 314 MFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLED 371
            ++     +          +F   + KE  V ++PG   G   + ++RI++A     LE+
Sbjct: 319 FYIFP--RIRDT--GLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEE 374

Query: 372 GLERIKAFCQRH 383
            ++R++   +  
Sbjct: 375 AMDRMERVLKER 386

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Length = 388

 Score =  160 bits (408), Expect = 9e-46
 Identities = 86/370 (23%), Positives = 150/370 (40%), Gaps = 52/370 (14%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLS 91
           +A   AL       Y P  G P  R  IA  L RD       +++ +T G  Q+I   + 
Sbjct: 50  EAAKAALE-QGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLML 108

Query: 92  VLARPGANILIPRP---GYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADEN 148
            +  PG  ++IP P    YP     A G+   L         E +++V  + +       
Sbjct: 109 AMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTT-----VETQFKVSPEQIRQAITPK 163

Query: 149 TVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS 208
           T  +V   P NP G V++   ++ IA+ A   G+ V++DE+Y  + +    ++ +   G+
Sbjct: 164 TKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSI---GA 220

Query: 209 IVP-----VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASH---- 259
             P      +     +K + + GWR+G+L            G V  +K       H    
Sbjct: 221 ASPEAYERSVVCSGFAKTYAMTGWRVGFLA-----------GPVPLVKAATKIQGHSTSN 269

Query: 260 PVTFIQAAV-------PRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQG 312
             TF Q             V E   AF         E      + +  +P + CP KP G
Sbjct: 270 VCTFAQYGAIAAYENSQDCVQEMLAAF--------AERRRYMLDALNAMPGLECP-KPDG 320

Query: 313 AMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDG 372
           A ++    +++  +     L+FC +L  +  V  +PG   G  + +R+++A +  T++ G
Sbjct: 321 AFYMFP--SIA--KTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRG 376

Query: 373 LERIKAFCQR 382
           +ER++ F   
Sbjct: 377 MERLEKFLHG 386

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 Length = 389

 Score =  153 bits (390), Expect = 3e-43
 Identities = 89/371 (23%), Positives = 153/371 (41%), Gaps = 65/371 (17%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLS 91
           +  V  L+      Y+   G+   R GIA  +       +SP+ V +T G  QA+  +  
Sbjct: 61  EEAVRFLQ-KGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFM 119

Query: 92  VLARPGANILIPRPGYPLYE--IHAAGSN----NNLEARHYDLLPEKRWEVDLDGVEALA 145
            L  PG  +++  P +  Y   I  AG          ++++    E+        VE L 
Sbjct: 120 ALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEE--------VEGLL 171

Query: 146 DENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV 205
              T A++I +P NP G V+  + L+ + R A+     +I+DEVY+ L +          
Sbjct: 172 VGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYT-------DE 224

Query: 206 FGSIVPV-------ITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAAS 258
           F SI+ V       + +   SK   + GWR+G+L+                        S
Sbjct: 225 FTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLI-----------SSEKVATAVSKIQS 273

Query: 259 H----PVTFIQ-AAVPRI---VDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKP 310
           H      T  Q AA+  +        + F        KE  +   ER+K++  +    +P
Sbjct: 274 HTTSCINTVAQYAALKALEVDNSYMVQTF--------KERKNFVVERLKKMG-VKFV-EP 323

Query: 311 QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLE 370
           +GA ++     V      GDD++FC +L +E+ V ++PG       ++R++FA     L 
Sbjct: 324 EGAFYLFF--KVR-----GDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLT 376

Query: 371 DGLERIKAFCQ 381
           + L+RI+ F  
Sbjct: 377 EALDRIEDFLN 387

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* Length = 385

 Score =  151 bits (385), Expect = 1e-42
 Identities = 85/370 (22%), Positives = 151/370 (40%), Gaps = 55/370 (14%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLS 91
           +A   AL       Y+P  G+P  R  +A+   R+    ++PE+  +T+G SQA+     
Sbjct: 51  EAARRALA-QGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQ 109

Query: 92  VLARPGANILIPRP---GYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADEN 148
            +  PG  +++  P    YP     A G    +E       PE+ +  D + V       
Sbjct: 110 AILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETL-----PEEGFVPDPERVRRAITPR 164

Query: 149 TVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS 208
           T A+V+ +P NP G V+  + L+ +AR A      +++DE+Y HL +    + P    G 
Sbjct: 165 TKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSP----GR 220

Query: 209 IVP--VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASH----PVT 262
           + P   +T+   +K + + GWR+G+             G  + IK   + +      P T
Sbjct: 221 VAPEHTLTVNGAAKAFAMTGWRIGYAC-----------GPKEVIKAMASVSRQSTTSPDT 269

Query: 263 FIQAAV----------PRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQG 312
             Q A              V+   EA+        +   D+  E +  +  +    +P G
Sbjct: 270 IAQWATLEALTNQEASRAFVEMAREAY--------RRRRDLLLEGLTALG-LKAV-RPSG 319

Query: 313 AMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDG 372
           A +V++  + S +    D++    +L  E  V ++PG        +R+++A     L   
Sbjct: 320 AFYVLM--DTSPI--APDEVRAAERL-LEAGVAVVPGTDFAAFGHVRLSYATSEENLRKA 374

Query: 373 LERIKAFCQR 382
           LER      R
Sbjct: 375 LERFARVLGR 384

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376

 Score =  149 bits (378), Expect = 1e-41
 Identities = 72/367 (19%), Positives = 127/367 (34%), Gaps = 47/367 (12%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI-EISL 90
           DA+ +   + +   Y  +    S R     +  R    +L   ++  TLG  + +     
Sbjct: 43  DALKNHTHSLNI--YPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPS 100

Query: 91  SVL-ARPGANILIPRPGYPLYEIHA--AGSNNNLEARHYDLLPEKRWEVDLDGVEALADE 147
            VL       I  P P Y +YE  A    +    ++    L  E  +   L+  E    E
Sbjct: 101 FVLFDYQNPTIAYPNPFYQIYEGAAKFIKA----KSLLMPLTKENDFTPSLN--EKELQE 154

Query: 148 NTVAIVIIN-PGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF 206
             V +VI+N P NP G   S + L    + A     I+I DE Y+ +   + P   +   
Sbjct: 155 --VDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEAC 212

Query: 207 GSIVP-----VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPV 261
                     V+ + S+SKR   PG R G++   D   +     +  + +          
Sbjct: 213 MLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIA-GDSRLL---EKYK-AFRA--YLGYTSA 265

Query: 262 TFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLN 321
             IQ A        ++        +      +  +  K             + +V +   
Sbjct: 266 NAIQKAS--EAAWLDDRHAEFFRNIYANNLKLARKIFKNTL------IYPYSFYVYLP-- 315

Query: 322 VSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKN----WLRIAFAAEPATLEDGLERIK 377
                 + +   F   L + E +I LP   +G       ++R+A   +   LE  LE I+
Sbjct: 316 ------VQNGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIE 369

Query: 378 AFCQRHA 384
            + + HA
Sbjct: 370 TYRENHA 376

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Length = 412

 Score =  150 bits (380), Expect = 1e-41
 Identities = 74/375 (19%), Positives = 142/375 (37%), Gaps = 54/375 (14%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPED-VYLTLGCSQAIEISL 90
           + +    +    + YS + G+P  RR I+ +       ++ PE    +T+G  + +   +
Sbjct: 57  EKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLM 116

Query: 91  SVLARPGANILIPRPGYPLYEIHA--AGSNNNLEARHYDLLPEKRWEVDLDGVEALADEN 148
                 G  IL+P P YP++   A  AG+    + R   L+P   +  +L+     +   
Sbjct: 117 LATLDHGDTILVPNPSYPIHIYGAVIAGA----QVRSVPLVPGIDFFNELERAIRESIPK 172

Query: 149 TVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS 208
              +++  P NP          +++   A+   ++V+ D  Y  + +            S
Sbjct: 173 PRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAP------S 226

Query: 209 I--VP-----VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDS---IKGCLNAAS 258
           I  VP      +   ++SK + + GWR+G++V     G   N   V +   IK       
Sbjct: 227 IMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMV-----G---NPELVSALARIKS--YHDY 276

Query: 259 HPVTFIQ-AAV------PRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ 311
              T +Q AA+       + V +    +        ++  D+  + ++E         P+
Sbjct: 277 GTFTPLQVAAIAALEGDQQCVRDIARQY--------QQRRDVLVKGLREAGW-MVE-NPK 326

Query: 312 GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATL 369
            +M+V  K+           LEF  KL ++  V + PG   G    + +R A       L
Sbjct: 327 ASMYVWAKIPEPYAH--LGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIENRDRL 384

Query: 370 EDGLERIKAFCQRHA 384
              +  IKA  +   
Sbjct: 385 RQAVRGIKAMFRADG 399

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} Length = 376

 Score =  147 bits (374), Expect = 6e-41
 Identities = 75/363 (20%), Positives = 128/363 (35%), Gaps = 48/363 (13%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPED-VYLTLGCSQAIEISL 90
            A+ +AL       Y             A +        L P       +G  + +   L
Sbjct: 45  KALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLL 104

Query: 91  SVLARPGANILIPRPGYPLYEIHA--AGSNNNLEARHYDLLPEKRWEVDLDGVEALADEN 148
             L  P   +L+P   YP Y   A  A            L  +     DL  V       
Sbjct: 105 LALTEPEDLLLLPEVAYPSYFGAARVASL----RTFLIPLRED--GLADLKAVPEGVWRE 158

Query: 149 TVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS 208
              +++  P NP G V  + + ++    AR  G+ +I D  Y    +      P+ + G+
Sbjct: 159 AKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGA 218

Query: 209 IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDS---IKGCLNAASHPVTFIQ 265
              V+ L S+SK + + G+RLG+ +         +   +     +KG      +    + 
Sbjct: 219 KERVVELFSLSKSYNLAGFRLGFALG--------SEEALARLERVKG--VIDFNQYAGVL 268

Query: 266 -AAV------PRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMV 318
              V        +V      +        +E A    E +K +  ++    P+  M++  
Sbjct: 269 RMGVEALKTPKEVVRGYARVY--------RERALGMAEALKGV--LSLL-PPRATMYLWG 317

Query: 319 KLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERI 376
           +L   +     DDLEF L+L  E  V + PGR  G   K ++RIA       L +  +RI
Sbjct: 318 RLPEGV-----DDLEFGLRLV-ERGVALAPGRGFGPGGKGFVRIALVRPLEELLEAAKRI 371

Query: 377 KAF 379
           +  
Sbjct: 372 REA 374

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} Length = 404

 Score =  142 bits (360), Expect = 9e-39
 Identities = 66/367 (17%), Positives = 131/367 (35%), Gaps = 45/367 (12%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPED-VYLTLGCSQAIEISL 90
           D    AL       Y    G  + ++ I D+  R     L  ED V +  G    +    
Sbjct: 67  DHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVP 126

Query: 91  SVLARPGANILIPRPGYPLYEIHA--AGSNNNLEARHYDLLPEKRWEVDLDGVEALADEN 148
           + +  PG  +L+P PGY  Y      A      +    +L P   +  D   V++   + 
Sbjct: 127 TCVINPGDYVLLPDPGYTDYLAGVLLADG----KPVPLNLEPPH-YLPDWSKVDSQIIDK 181

Query: 149 TVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS 208
           T  I +  P NP G+  + +   +     +     ++ D  Y    F +     +     
Sbjct: 182 TKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENG 241

Query: 209 IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDS---IKGCLNAASHPVTFIQ 265
               I + S+SK + + G+R+G+ V         N   + +    +   +  +     +Q
Sbjct: 242 KDVAIEIYSLSKGYNMSGFRVGFAVG--------NKDMIQALKKYQT--HTNAGMFGALQ 291

Query: 266 -AAV------PRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMV 318
            AA+         ++E +  F        K   D     + +          +G ++V +
Sbjct: 292 DAAIYALNHYDDFLEEQSNVF--------KTRRDRFEAMLAKADL-PFV-HAKGGIYVWL 341

Query: 319 KLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERI 376
           +          D  +F   L +E+S+++ PG+  G     ++RI+ A +   L++   R+
Sbjct: 342 ETPPGY-----DSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRL 396

Query: 377 KAFCQRH 383
                 +
Sbjct: 397 TELAYLY 403

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* Length = 427

 Score =  136 bits (345), Expect = 1e-36
 Identities = 43/369 (11%), Positives = 98/369 (26%), Gaps = 52/369 (14%)

Query: 39  RTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA---- 94
           R +++             + I +              +   +G +Q I   +  L+    
Sbjct: 89  RMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMT 148

Query: 95  ----RPGANILIPRPGYPLYE--IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADEN 148
                P + ++   P YP++                         W  +      +++  
Sbjct: 149 ATPDAPESKVVAHAPFYPVFREQTKYFDK------------KGYVWAGNAANYVNVSNPE 196

Query: 149 TVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS 208
               ++ +P NP G +          R A   G   I D VY    +    Y        
Sbjct: 197 QYIEMVTSPNNPEGLL----------RHAVIKGCKSIYDMVYYWPHYTPIKYKAD----- 241

Query: 209 IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLN-----AASHPVTF 263
               I L ++SK     G R GW +  D +       ++              +   +  
Sbjct: 242 --EDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKE 299

Query: 264 IQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVS 323
           + A V        +         L+E        + +    +    PQ       +    
Sbjct: 300 VVAMVKTQKGTMRD-LNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRP 358

Query: 324 ------MLEDIGDDLEFCLKLAKEESVIILPGRTVGM-KNWLRIAFAAEPATLEDGLERI 376
                  ++   ++ + C +  +   +    G        ++R++        +  +  +
Sbjct: 359 PSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQLMYYL 418

Query: 377 KAFCQRHAK 385
           K   +   K
Sbjct: 419 KDMVKAKRK 427

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* Length = 397

 Score =  132 bits (335), Expect = 3e-35
 Identities = 79/342 (23%), Positives = 138/342 (40%), Gaps = 36/342 (10%)

Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRP 105
           YSPT G    R  +A+++       + PE+V +T G  QA+++   V    G+ +L+  P
Sbjct: 70  YSPTEGYAPLRAFVAEWIG------VRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAP 123

Query: 106 GYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINP--GNPCGN 163
            Y +  I A                E     DLD +E +        + + P   NP G 
Sbjct: 124 SY-MGAIQAFRLQG-PRFLTVPAGEEG---PDLDALEEVLKRERPRFLYLIPSFQNPTGG 178

Query: 164 VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF---GSIVPVITLGSISK 220
           +      +++ +     G++V+ D+ Y  L FG      +           VI LGS SK
Sbjct: 179 LTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSK 238

Query: 221 RWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFF 280
             + PG R+ + V       LQ    +   K    A  H     Q  V  ++ E      
Sbjct: 239 -VLSPGLRVAFAVAHPE--ALQK---LVQAK--QGADLHTPMLNQMLVHELLKEGFSERL 290

Query: 281 AKIIGLLKETADICYERI-KEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLA 339
            ++  + +E A      + +E+P      +P+G MFV ++L     + +        + A
Sbjct: 291 ERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMELP----KGL-SAEGL-FRRA 344

Query: 340 KEESVIILPGR----TVGMKNWLRIAFA-AEPATLEDGLERI 376
            EE+V  +PG       G +N LR+++A  +   + +G+ R+
Sbjct: 345 LEENVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRL 386

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Length = 533

 Score =  133 bits (336), Expect = 8e-35
 Identities = 72/419 (17%), Positives = 139/419 (33%), Gaps = 81/419 (19%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE---DVYLTLGCSQAIEI 88
           + V  A+   +Y    P   + +  + I  +L        +     D++ T G + AI  
Sbjct: 123 EWVNGAVA-NNY--PVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVY 179

Query: 89  SLSVLAR-----PGANILIPRPGYPLYE--IHAAGSNNNLEARHYDLLPEKRWEVDLDGV 141
           +   LA       G  I I  P +  Y                H     +  WE++ + +
Sbjct: 180 AFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSY--EKNDWEIEPNEI 237

Query: 142 EALADENTVAIVIINPGNPCGNVFSYQHLQKIARTA-RNLGIIVIADEVYNHLAFGSTPY 200
           E L D +  A++++NP NP    F    L  I +   +N  +++I+DEVY          
Sbjct: 238 EKLKDPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKS- 296

Query: 201 VPMGVFGSIVP--VITLGSISKRWIVPGWRLGWL-------------------------- 232
                  S+VP   + + S SK +   GWRLG +                          
Sbjct: 297 -----IYSVVPYNTMLVYSYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKR 351

Query: 233 ---VTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQ----------AAVPRIVDETNEAF 279
              V  DP+ +          +      +  ++  Q            +      +++ +
Sbjct: 352 YSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPY 411

Query: 280 FAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIG---------- 329
                 L+ E  D  ++ + + P            + ++ +     +  G          
Sbjct: 412 IDIARKLVSERYDQLHDAM-QAPKDETD--TNTHYYSLIDIYRLAEKIYGKEFRDYLTNN 468

Query: 330 -DDLEFCLKLAKEESVIILPGRTVGMKNW-LRIAFAAEPATLEDGLERIKAFCQRHAKK 386
            + ++F LKLA++  V+++ G   G K   LR++ A       +    I        K+
Sbjct: 469 FEQVDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQA---NLPTEDYALIGKQVLELLKE 524

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 Length = 425

 Score =  131 bits (332), Expect = 1e-34
 Identities = 72/363 (19%), Positives = 136/363 (37%), Gaps = 42/363 (11%)

Query: 46  YSPTLGVPSARRGIADYLNRDL-PYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPR 104
           YS T G P  ++ I   L R      L  +++  T+G  QA+++   +     +  ++  
Sbjct: 81  YSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDD 140

Query: 105 PGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINP------- 157
           P Y L  I+A        A  + ++P +   +DL+ +E    E      I          
Sbjct: 141 PAY-LGAINAFRQ---YLAN-FVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVS 195

Query: 158 --GNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITL 215
              NP G   S +  + +   A    + ++ D+ Y  L +      P+   G    V+ L
Sbjct: 196 NFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLL 255

Query: 216 GSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAAS-HPVTFIQAAVPRIVDE 274
            + SK  + PG R+G +  S          F+  I     +A             R ++ 
Sbjct: 256 NTFSK-VLAPGLRIGMVAGSKE--------FIRKIVQAKQSADLCSPAITHRLAARYLER 306

Query: 275 TN-EAFFAKIIGLLKETADICYERIKE----IPCITCPVKPQGAMFVMVKLNVSMLEDIG 329
            +        I L +    +    ++E    IP +   VK +G +F+ + L     E   
Sbjct: 307 YDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKW-VKSEGGLFIWLTLP----EGF- 360

Query: 330 DDLEFCLKLAKEESVIILPGR----TVGMKNWLRIAFA-AEPATLEDGLERIKAFCQRHA 384
           D  E   + AK + V  +PGR           +R++F       + +G++R++     + 
Sbjct: 361 DTWEM-FEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLEYG 419

Query: 385 KKQ 387
           K++
Sbjct: 420 KEK 422

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} Length = 407

 Score =  131 bits (331), Expect = 1e-34
 Identities = 76/352 (21%), Positives = 141/352 (40%), Gaps = 46/352 (13%)

Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRP 105
           Y+P  G+P  R  +A +L +    ++SPE++ +T+G + A+++   VL  PG  ++   P
Sbjct: 71  YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENP 130

Query: 106 GYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDG--VEALAD--------ENTVAIVII 155
            Y +  + A      L A+   +       VD DG  V+ L +           V ++  
Sbjct: 131 SY-INTLLAFEQ---LGAKIEGV------PVDNDGMRVDLLEEKIKELKAKGQKVKLIYT 180

Query: 156 NP--GNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVI 213
            P   NP G   S +  + +   A    +++I D  YN + +     VP+    +   VI
Sbjct: 181 IPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVI 240

Query: 214 TLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAAS-HPVTFIQAAVPRIV 272
             G++SK  +  G+R+GW++             +  +               Q      +
Sbjct: 241 VAGTLSKV-LGTGFRIGWIIAEGE--------ILKKVLMQKQPIDFCAPAISQYIALEYL 291

Query: 273 DETN--EAFFAKIIGLLKETADICYERI-KEIPCITCPVKPQGAMFVMVKLNVSMLEDIG 329
                 +      +   KE  DI  + +   +P      KP   MFVM  L     E   
Sbjct: 292 KRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEF-TKPIAGMFVMFFLP----EGA- 345

Query: 330 DDLEFCLKLAKEESVIILPGR----TVGMKNWLRIAFA-AEPATLEDGLERI 376
           D + F  +L + E V+++PG+        KN +R+ F+      +  G++++
Sbjct: 346 DGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKL 397

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Length = 432

 Score =  131 bits (332), Expect = 1e-34
 Identities = 75/390 (19%), Positives = 124/390 (31%), Gaps = 63/390 (16%)

Query: 32  DAVVDALRTA--------HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCS 83
           + +  A+            Y+ Y    G    R  IA          +  +DV+++ G  
Sbjct: 72  EVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGG--LGIGDDDVFVSDGAK 129

Query: 84  QAIEISLSVLARPGANILIPRPGYPLYEIHA--AGSNNNLEA--------RHYDLLPEKR 133
             I   L V+      I +  P YP Y   +   G                +    PE  
Sbjct: 130 CDI-SRLQVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENG 188

Query: 134 WEVDLDGVEALADENTVAIVIIN-PGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNH 192
           +  DL  V          I+    P NP G   + + L ++   A+  G I++ D  Y  
Sbjct: 189 FFPDLSTVG------RTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAM 242

Query: 193 LAFGSTPYVPMGVFGSI--VP-----VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSG 245
                 P        SI  +P      +   S S      G RLGW V   P  +L + G
Sbjct: 243 YMSDDNPR-------SIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVI--PKKLLYSDG 293

Query: 246 FVDS-----IKG-CLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIK 299
           F  +     I   C N AS+     QA     +         K+IG  KE  +I  +   
Sbjct: 294 FPVAKDFNRIICTCFNGASNI---SQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFT 350

Query: 300 EIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNW 357
            +         + A +V V              +   ++ ++  V+  PG   G   + +
Sbjct: 351 SLGY-DVY-GGKNAPYVWVHFPN------QSSWDVFAEILEKTHVVTTPGSGFGPGGEGF 402

Query: 358 LRIAFAAEPATLEDGLERIKAFCQRHAKKQ 387
           +R++       + +   R K   + H    
Sbjct: 403 VRVSAFGHRENILEACRRFKQLYKHHHHHH 432

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Length = 546

 Score =  132 bits (333), Expect = 3e-34
 Identities = 65/414 (15%), Positives = 117/414 (28%), Gaps = 83/414 (20%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIA-DYLNRDLPYKLSPE---DVYLTLGCSQAIE 87
           + V   L       Y     + +    I   Y+ R++     P    +++   G + A+ 
Sbjct: 124 EMVDGILGCN----YPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMA 179

Query: 88  ISLSVLAR-----PGANILIPRPGYPLYE--IHAAGSNNN---LEARHYDLLPEKRWEVD 137
                L        G  + I  P +  Y      A        + A      P   W+  
Sbjct: 180 YIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINAD-----PSLNWQYP 234

Query: 138 LDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTAR--NLGIIVIADEVYNHLAF 195
              ++ L D        +NP NP       + L+++          ++++ D+VY   A 
Sbjct: 235 DSELDKLKDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFAD 294

Query: 196 GSTPYVPMGVFGSIVP--VITLGSISKRWIVPGWRLGWLVTSDPNGI------LQNSGFV 247
                       +I P   + + S SK +   GWRLG +     N        LQ S  V
Sbjct: 295 DFQS------LFAICPENTLLVYSFSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKV 348

Query: 248 DSIK--GCLNAASHPVTFIQAAV----------------PRIVDETNEAFFAKIIG---L 286
                   L      + FI   V                P+ V     + FA +      
Sbjct: 349 ALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEY 408

Query: 287 LKETADICYER------IKEIPCITCPVKPQGAMFVMV-----------KLNVSMLEDIG 329
                 +   R         +P +          + ++           +          
Sbjct: 409 KHTLKQLIRRRETTLYRELGMPPLRDE--NAVDYYTLIDLQDVTAKLYGEAFSEWAVKQS 466

Query: 330 DDLEFCLKLAKEESVIILPGRTVGMKNW-LRIAFAAEPATLEDGLERIKAFCQR 382
              +   ++A E  +++LPGR  G      R + A      E     I    ++
Sbjct: 467 STGDMLFRIADETGIVLLPGRGFGSNRPSGRASLANLN---EYEYAAIGRALRK 517

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396

 Score =  128 bits (323), Expect = 1e-33
 Identities = 78/373 (20%), Positives = 143/373 (38%), Gaps = 49/373 (13%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNR--DLPYKLSPED-VYLTLGCSQAI-E 87
           DA+  +L       Y  T G+P  R+  A++L R  D    +  ++ +   LG  +A+  
Sbjct: 50  DALTASLHELEK--YPLTAGLPELRQACANWLKRRYDGL-TVDADNEILPVLGSREALFS 106

Query: 88  ISLSVL----ARPGANILIPRPGYPLYEI--HAAGSNNNLEARHYDLLPEKRWEVDLDGV 141
              +VL          I+ P P Y +YE      G        H+   P   +  D   +
Sbjct: 107 FVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGE-----IHFANCPAPSFNPDWRSI 161

Query: 142 EALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTP-- 199
                + T  + + +P NP G+V      +++       G I+ +DE Y+ + F      
Sbjct: 162 SEEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPL 221

Query: 200 ---YVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNA 256
                   +  S   ++   S+SKR  VPG R G++   D   +     F+   +     
Sbjct: 222 GCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVA-GDAELL---KNFL-LYRT--YH 274

Query: 257 ASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFV 316
            S     +Q A   I    +E        L +E  +     ++++  +     P  + ++
Sbjct: 275 GSAMSIPVQRAS--IAAWDDEQHVIDNRRLYQEKFERVIPILQQVFDVK---LPDASFYI 329

Query: 317 MVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--------KNWLRIAFAAEPAT 368
            +K+        GDDL F   L ++ ++ +LPGR +          + ++RIA  A+ AT
Sbjct: 330 WLKV------PDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVAT 383

Query: 369 LEDGLERIKAFCQ 381
                E I +  +
Sbjct: 384 CVKAAEDIVSLYR 396

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* Length = 400

 Score =  125 bits (317), Expect = 9e-33
 Identities = 66/372 (17%), Positives = 127/372 (34%), Gaps = 55/372 (14%)

Query: 32  DAVVDALRTA--------HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCS 83
            +V +A  ++            Y P  G+P+ R+ +++   R     +  ++++++ G  
Sbjct: 49  ASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGF---VDAKEIFISDGAK 105

Query: 84  QAIEISLSVLARPGANILIPRPGYPLYEIHA--AGSNNNLEARHYDLLPEKRWEVDLDGV 141
             +   L     P   + I  P YP Y   A   G+           L E  +  +    
Sbjct: 106 VDL-FRLLSFFGPNQTVAIQDPSYPAYLDIARLTGAKE---IIALPCLQENAFFPEFP-- 159

Query: 142 EALADENTVAIVIIN-PGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPY 200
               ++  + I+ +  P NP G V +   L+ I   A    I+++ D  Y+       P 
Sbjct: 160 ----EDTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISD--PS 213

Query: 201 VPMGVFGSI--VP-----VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGC 253
           +P     SI  +P      I + S SK     G RLGW V       L  +     I+  
Sbjct: 214 LPK----SIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVI---PQELTYADGHFVIQDW 266

Query: 254 L----NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVK 309
                   +      Q A    +    +    + I   +E +D+  + +           
Sbjct: 267 ERFLSTTFNGASIPAQEAGVAGLSILPQ---LEAIHYYRENSDLLRKALLATGF-EVF-G 321

Query: 310 PQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPA 367
            + A ++ VK      +    D +      +E  + I PG   G     ++R +   +  
Sbjct: 322 GEHAPYLWVKPT----QANISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLGKRE 377

Query: 368 TLEDGLERIKAF 379
            +    ER++  
Sbjct: 378 DILAACERLQMA 389

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Length = 423

 Score =  126 bits (318), Expect = 1e-32
 Identities = 64/366 (17%), Positives = 112/366 (30%), Gaps = 57/366 (15%)

Query: 46  YS-PTLGVPSARRGIADYLNRDLPY-------KLSPEDVYLTLGCSQAIEISLSVLARPG 97
           Y     G+PSAR   A YL+             L  + + LT      +  S        
Sbjct: 65  YPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQT 124

Query: 98  ANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVE-ALADENTVAIVIIN 156
             +++  PGY             L       +  +    D+D VE     + +V  ++  
Sbjct: 125 PKMIVTVPGYD----RHFLLLQTLGFE-LLTVDMQSDGPDVDAVERLAGTDPSVKGILFV 179

Query: 157 P--GNPCGNVFSYQHLQKIAR-TARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVP-- 211
           P   NP G   S +  +++A   A      + AD+ Y               F  +    
Sbjct: 180 PTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDA 239

Query: 212 -----VITLGSISKRWIV-PGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAAS-HPVTFI 264
                     S SK  I   G  LG++ +S+ N        +  +   L A S  P    
Sbjct: 240 GYPDRAFVFASTSK--ITFAGAGLGFVASSEDN--------IRWLSKYLGAQSIGPNKVE 289

Query: 265 QAAVPRIVDETN---EAFFAKIIGLLKE----TADICYERIKEIPCITCPVKPQGAMFVM 317
           QA   + + E     E        ++        ++    + E         P+G  F+ 
Sbjct: 290 QARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFIS 349

Query: 318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPG------RTVGMKNWLRIAFA-AEPATLE 370
           +       E + D +   +KLA+   V + P               LR+A        + 
Sbjct: 350 LDT----AEPVADRV---VKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRPPVEEVR 402

Query: 371 DGLERI 376
             ++ +
Sbjct: 403 TAMQVV 408

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* Length = 448

 Score =  126 bits (319), Expect = 1e-32
 Identities = 81/350 (23%), Positives = 139/350 (39%), Gaps = 44/350 (12%)

Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRP 105
           Y  T G    R  +  +L +         D+ +T G  QA+++   V   PG  +++  P
Sbjct: 114 YGTTKGFTPLRETLMKWLGKRYG-ISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAP 172

Query: 106 GYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDG--VEALAD--------ENTVAIVII 155
            Y L  + A       E ++  +       +D +G  VE L +           V +V  
Sbjct: 173 TY-LAALQAFNF---YEPQYIQI------PLDDEGMKVEILEEKLKELKSQGKKVKVVYT 222

Query: 156 NP--GNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVI 213
            P   NP G   +    + +   A     IV+ D+ Y  L +   P   +    +   VI
Sbjct: 223 VPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVI 282

Query: 214 TLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVD 273
            LG+ SK  + PG+R+GW+V      I++    ++  K   +       F Q    R VD
Sbjct: 283 YLGTFSK-ILAPGFRIGWMVGDPG--IIRK---MEIAK--QSTDLCTNVFGQVVAWRYVD 334

Query: 274 ETN-EAFFAKIIGLLKETADICYERI-KEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDD 331
               E    +I    K   D   E + + +P      KP+G MF+ V L     + I D 
Sbjct: 335 GGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLP----DGI-DS 389

Query: 332 LEFCLKLAKEESVIILPGR----TVGMKNWLRIAFA-AEPATLEDGLERI 376
            +  L+ A ++ V  +PG        +KN +R+ F   +   + +G++R+
Sbjct: 390 KKM-LERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRL 438

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* Length = 391

 Score =  122 bits (308), Expect = 1e-31
 Identities = 48/365 (13%), Positives = 96/365 (26%), Gaps = 41/365 (11%)

Query: 30  AEDAVVDALRTAHYN---CYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI 86
                +       Y            P     I D              + +  G +Q  
Sbjct: 45  RCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLC 104

Query: 87  EISLSVLARPGA----NILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVE 142
           + ++  L+        +++   P Y  Y                  +    ++ + D   
Sbjct: 105 QAAVHALSSLARSQPVSVVAAAPFYSTYVEET------------TYVRSGMYKWEGD-AW 151

Query: 143 ALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP 202
               +     ++ +P NP G +      + +     +    VI D  Y    +       
Sbjct: 152 GFDKKGPYIELVTSPNNPDGTI-----RETVVNRPDDDEAKVIHDFAYYWPHYTPIT--- 203

Query: 203 MGVFGSIVP-VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD-SIKGCLNAASHP 260
                      I L + SK     G R+GW +  D     +   ++  +  G    +   
Sbjct: 204 -----RRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVR 258

Query: 261 VTFIQAAVPRIVDETN--EAFFAKIIGLLKETADICYERIKEIPCITCP-VKPQGAMFVM 317
              I   +       +  E FF     ++K   +   E +KE    T P        +  
Sbjct: 259 TAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFG 318

Query: 318 VKLNVSM--LEDIGDDLEFCLKLAKEESVIILPGRTVGM-KNWLRIAFAAEPATLEDGLE 374
             L            +    +   +   V+   G   G  K  +R++  +        LE
Sbjct: 319 KSLESYPAFAWLGTKEETDLVSELRRHKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLE 378

Query: 375 RIKAF 379
           R+   
Sbjct: 379 RLANM 383

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Length = 422

 Score =  121 bits (306), Expect = 5e-31
 Identities = 63/369 (17%), Positives = 103/369 (27%), Gaps = 67/369 (18%)

Query: 46  YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISL--------------S 91
           Y   LG+   R   A+ L       L  + V    G S  I   L               
Sbjct: 72  YGGLLGIADIRELWAEALG------LPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRP 125

Query: 92  VLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVA 151
             A      L P PGY            +        +P      D+  V  L  +  V 
Sbjct: 126 WSAEEKVKWLCPVPGY-DRHFTIT---EHFGFE-MINVPMTDEGPDMGVVRELVKDPQVK 180

Query: 152 IVIINP--GNPCGNVFSYQHLQKIARTA-RNLGIIVIADEVYNHLAFGSTPYVPMGVFGS 208
            +   P  GNP G  FS Q  +++A  +       ++ D  Y          +   V   
Sbjct: 181 GMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEF 240

Query: 209 IVP------VITLGSISKRWIV-PGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAAS-HP 260
                       + S SK  I   G  + +  +S  N        ++      N     P
Sbjct: 241 AQAAGNPNRFWFMSSTSK--ITHAGSGVSFFASSKEN--------IEWYASHANVRGIGP 290

Query: 261 VTFIQAAVPRIVDETN--EAFFAKIIGLLKETADICYERIKE----IPCITCPVKPQGAM 314
               Q A  +   +    +A   K    L    +   E +               P G  
Sbjct: 291 NKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKW-TSPTGGY 349

Query: 315 FVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTV------GMKNWLRIAFA-AEPA 367
           F+ V +    +      +   ++LAKE  + +    +            +R+A +    A
Sbjct: 350 FISVDV----VPGTASRV---VELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSLPPVA 402

Query: 368 TLEDGLERI 376
            LE  ++  
Sbjct: 403 ELEVAMDGF 411

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449

 Score =  121 bits (306), Expect = 5e-31
 Identities = 66/379 (17%), Positives = 124/379 (32%), Gaps = 58/379 (15%)

Query: 32  DAVVDALRTA--------HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCS 83
             + DA+  A         Y+ Y    G  + R  +A           + ++++++ G  
Sbjct: 85  KYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGH--AGRAADEIFISDGSK 142

Query: 84  QAIEISLSVLARPGANILIPRPGYPLYEIHA--AG------SNNNLEARHYDLLPEKRWE 135
             I   + ++      + +  P YP+Y   +   G              +    P+  + 
Sbjct: 143 CDI-ARIQMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFF 201

Query: 136 VDLDGVEALADENTVAIVIIN-PGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLA 194
            DL   +         I+    P NP G   +   L ++   AR  G I++ D  Y    
Sbjct: 202 PDLSKAK------RTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYI 255

Query: 195 FGSTPYVPMGVFGSI--VP-----VITLGSISKRWIVPGWRLGWLV----TSDPNGILQN 243
               P  P     +I  +P      I   S SK     G RLGW V        NG   +
Sbjct: 256 SN--PDCPK----TIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVH 309

Query: 244 SGFVDSIKG-CLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIP 302
           + + + +   C N AS+    +QA     +          +I   KE A I      E+ 
Sbjct: 310 ADW-NRVMTTCFNGASNI---VQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMG 365

Query: 303 CITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRI 360
             +       A ++ V              +   ++ +  +++  PG   G   + ++R 
Sbjct: 366 F-SVY-GGDDAPYIWVGF------PGKPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRA 417

Query: 361 AFAAEPATLEDGLERIKAF 379
           +       + + + R K  
Sbjct: 418 SAFGSRENILEAVRRFKEA 436

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430

 Score =  119 bits (301), Expect = 2e-30
 Identities = 61/377 (16%), Positives = 126/377 (33%), Gaps = 44/377 (11%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRD-LPYKLSPEDVYL-TLGCSQAIEIS 89
           DA+ + L       Y+P  G+   R      + RD     +      + T   +  + + 
Sbjct: 70  DAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLV 129

Query: 90  LSVLARPGANILIPRPGYPLYE--IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE 147
             +       IL+P   +  Y+   +     N      +D    K      D +      
Sbjct: 130 GDLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFD----KDGHYTTDSLVEALQS 185

Query: 148 NT--VAIVIIN-PGNPCGNVFSYQHLQKIARTARNLG-----IIVIADEVYNHLAFGSTP 199
                 I+I+N P NP G   +++ +  I    + L      +I + D+ Y  L +    
Sbjct: 186 YNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVY 245

Query: 200 YVPM-----GVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL 254
              +      +  + +  I L   +K +   G+R+G++     +   +       +KG +
Sbjct: 246 TQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEV-LEAKVKGLI 304

Query: 255 NAA-SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEI-------PCITC 306
            +  S      Q+AV  ++ + N+ F  +I   ++   +  YE  KE+            
Sbjct: 305 RSNISSGPLPTQSAVKHVL-KNNKQFDKEIEQNIQTLKER-YEVTKEVVYADQYHSHWQA 362

Query: 307 PVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAA-E 365
                   F+ +K++        D       L  + S+ ++          +RIAF+  E
Sbjct: 363 -YDFNSGYFMAIKVHDV------DPEALRKHLIDKYSIGVIALNATD----IRIAFSCVE 411

Query: 366 PATLEDGLERIKAFCQR 382
              +    + I      
Sbjct: 412 KDDIPHVFDSIAKAIDD 428

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} Length = 427

 Score =  118 bits (298), Expect = 5e-30
 Identities = 62/392 (15%), Positives = 101/392 (25%), Gaps = 67/392 (17%)

Query: 24  LSDSTVAEDAVVDALRTAHYNC--YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLG 81
            +D  +A     D       +   Y    G+   R+  AD L          E V     
Sbjct: 50  FADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLGVP------VEQVLAGDA 103

Query: 82  CSQAIEISL--------------SVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYD 127
            S  I   +                        + P PGY                    
Sbjct: 104 SSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYD----RHFSITERFGFE-MI 158

Query: 128 LLPEKRWEVDLDGVEALADENTVAIVIINP--GNPCGNVFSYQHLQKIARTARN-LGIIV 184
            +P      D+D VE L     V  + + P   NP G   +    ++++          V
Sbjct: 159 SVPMNEDGPDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRV 218

Query: 185 IADEVYNHLAFGSTPYVPMGVFGSIVP------VITLGSISKRWIV-PGWRLGWLVTSDP 237
           + D  Y            + + G               S SK  I   G  + + +TS  
Sbjct: 219 VWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSK--ITLAGAGVSFFLTSAE 276

Query: 238 NGILQNSGFVDSIKGCLNAAS-HPVTFIQAAVPRIVDETN--EAFFAKIIGLLKETADIC 294
           N             G        P    Q A  R   +     A   K    L    +  
Sbjct: 277 N--------RKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKV 328

Query: 295 YERI-KEIPCITCP--VKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPG-- 349
            E +   +          P G  F+ + +    +      +    +LAKE  + +     
Sbjct: 329 LEILDSRLAEYGVAQWTVPAGGYFISLDV----VPGTASRV---AELAKEAGIALTGAGS 381

Query: 350 ----RTVGMKNWLRIAFA-AEPATLEDGLERI 376
               R       LR+A +      LE  ++ +
Sbjct: 382 SYPLRQDPENKNLRLAPSLPPVEELEVAMDGV 413

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* Length = 425

 Score =  115 bits (290), Expect = 8e-29
 Identities = 75/368 (20%), Positives = 132/368 (35%), Gaps = 61/368 (16%)

Query: 46  YSPTLGVPSARRGIADYLNR-------DLPYKLSPEDVYLTLGCSQAIEISLSVLARPGA 98
           YSP+ G+P     +     +         P      D+ +T G  Q +     ++  PG 
Sbjct: 74  YSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGD 133

Query: 99  NILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDG--VEALAD---------- 146
           N+L+  P Y    + +      L     ++        D  G   ++L D          
Sbjct: 134 NVLLDEPAY-SGTLQSLHP---LGCNIINV------ASDESGIVPDSLRDILSRWKPEDA 183

Query: 147 ----ENTVAIVIINP--GNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPY 200
               +NT   +   P   NP GN  + +  ++I   AR    ++I D+ Y  L F     
Sbjct: 184 KNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRV 243

Query: 201 VPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAAS-H 259
                      VI   S SK  I  G R+G+L    P         ++ +   +  ++ H
Sbjct: 244 PTFLSMDVDGRVIRADSFSKI-ISSGLRIGFLTGPKP--------LIERVILHIQVSTLH 294

Query: 260 PVTFIQAAVPRIVDETNEAFF----AKIIGLLKETADICYERI-KEIPCITCPVKPQGAM 314
           P TF Q  + +++ E  E  F     ++I       D       K +  +     P   M
Sbjct: 295 PSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGM 354

Query: 315 FVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGR-----TVGMKNWLRIAFA-AEPAT 368
           F+ +K+       I D  E   + A +  V++LPG      +     +LR +F+ A P  
Sbjct: 355 FLWIKVK-----GINDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQ 409

Query: 369 LEDGLERI 376
           ++   + +
Sbjct: 410 MDVAFQVL 417

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361

 Score = 99.1 bits (248), Expect = 2e-23
 Identities = 66/361 (18%), Positives = 131/361 (36%), Gaps = 74/361 (20%)

Query: 18  PLGVSLLSDSTVAEDAVVDALRTA--HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPED 75
           PLG+           + ++ +     +   Y P +      + I +Y       KL    
Sbjct: 37  PLGIP---------KSFLNNIDEGIKNLGVY-PDVNYRRLNKSIENY------LKLKDIG 80

Query: 76  VYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWE 135
           + L  G S+ IE+           ILI  P Y  YEI+A    + +      L  ++   
Sbjct: 81  IVLGNGASEIIEL----SISLFEKILIIVPSYAEYEINA--KKHGVSVVFSYL--DENMC 132

Query: 136 VDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAF 195
           +D + + +  D+    ++I NP NP G + + +    + + A      +I DE +     
Sbjct: 133 IDYEDIISKIDDVDS-VIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIE--- 188

Query: 196 GSTPYVPMGVFGSIVP-------VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD 248
               +       S V        +  + +++K + +PG R G+ +T++            
Sbjct: 189 ----FTGDPSS-SFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKE---------- 233

Query: 249 SIKGCLNAASHP--V-TFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCIT 305
            I   + A  +P  +  F + A    +   +  +  + +  +K+      E + +I  I 
Sbjct: 234 -IAAKIKAKQNPWNINCFAEMAAINCLK--DTNYIEESLLWIKKERKRFIEELNKIGFIK 290

Query: 306 CPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM-----KNWLRI 360
               P  A FV+ +L     E + D L        +E ++I   R          +++R 
Sbjct: 291 RVFSPH-ANFVLCRLENISGEKLYDSL-------LKEDIVI---RRCCNFIGLDDSFVRF 339

Query: 361 A 361
           A
Sbjct: 340 A 340

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364

 Score = 97.2 bits (243), Expect = 1e-22
 Identities = 65/349 (18%), Positives = 128/349 (36%), Gaps = 49/349 (14%)

Query: 18  PLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVY 77
           PLG+ +       + A++D L       Y P        + +A +        +    + 
Sbjct: 35  PLGMPVS-----VKRALIDNLDCIER--Y-PDADYFHLHQALARHHQ------VPASWIL 80

Query: 78  LTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVD 137
              G +++I              +I  PG+  Y      + +  E R + L     W++ 
Sbjct: 81  AGNGETESIF--TVASGLKPRRAMIVTPGFAEYGRAL--AQSGCEIRRWSLREADGWQLT 136

Query: 138 LDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS 197
              +EAL   +   + +  P NP G +     LQ IA   ++L I +I DE +       
Sbjct: 137 DAILEAL-TPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHE 195

Query: 198 TPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAA 257
           T ++P         +  L S++K + +PG RLG+LV SD           D+    +   
Sbjct: 196 TGFIPA--LKDNPHIWVLRSLTKFYAIPGLRLGYLVNSD-----------DAAMARMRRQ 242

Query: 258 SHP--V-TFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAM 314
             P  V      A    + +   A+       L+E     Y+ + ++P +T     + A 
Sbjct: 243 QMPWSVNALAALAGEVALQD--SAWQQATWHWLREEGARFYQALCQLPLLT-VYPGR-AN 298

Query: 315 FVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIA 361
           +++++          +D++   +L   + ++I            + R+A
Sbjct: 299 YLLLRCE-------REDIDLQRRLLT-QRILIRSCANYPGLDSRYYRVA 339

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} Length = 377

 Score = 96.0 bits (240), Expect = 3e-22
 Identities = 69/362 (19%), Positives = 126/362 (34%), Gaps = 44/362 (12%)

Query: 32  DAVVDAL--RTAH----YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQA 85
            AV+ A+          Y      L      +  A++      Y+  PE ++      + 
Sbjct: 39  PAVLQAITDAVQREAFGYQPDGSLL-----SQATAEFYADRYGYQARPEWIFPIPDVVRG 93

Query: 86  IEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALA 145
           + I++       + +++P P YP        S    E    D        ++L  VE   
Sbjct: 94  LYIAIDHFTPAQSKVIVPTPAYP--PFFHLLSATQREGIFIDA----TGGINLHDVEKGF 147

Query: 146 DENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV 205
                +I++ NP NP G VF+ + L ++   A      V+ DE++  L F    +     
Sbjct: 148 QAGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQ-HTV--- 203

Query: 206 FGSIVP-----VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHP 260
              +        IT+ + SK W + G +   ++ S+P+       +        + AS  
Sbjct: 204 AAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPS--DAEH-WQQLSPVIKDGASTL 260

Query: 261 -VTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE-IPCITCPVKPQGAMFVMV 318
            +   +AA           F  + +  LK   D     I + IP        Q    +  
Sbjct: 261 GLIAAEAAY-----RYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAK-ITPMQATYLMW- 313

Query: 319 KLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERI 376
            ++       G   EF ++ AK   V +  G   G     + R+ FA     LE+ ++R+
Sbjct: 314 -IDFRDTTIEGSPSEFFIEKAK---VAMNDGAWFGEDGTGFCRLNFATSREVLEEAIDRM 369

Query: 377 KA 378
             
Sbjct: 370 AK 371

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 Length = 390

 Score = 95.7 bits (239), Expect = 4e-22
 Identities = 68/366 (18%), Positives = 140/366 (38%), Gaps = 44/366 (12%)

Query: 32  DAVVDAL--RTAH----YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQA 85
             +++AL  R  H    Y+ +            IA + +      +  + V         
Sbjct: 44  PCIIEALNQRLMHGVFGYSRWKN----DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYM 99

Query: 86  IEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPE-KRWEVDLDGVEA- 143
           +   +   +  G  ++I  P Y     + A   N        L  +   W  D+  +EA 
Sbjct: 100 VSELIRQWSETGEGVVIHTPAYD--AFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAV 157

Query: 144 LADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPM 203
           LA      +++ +P NP G V++   L+ +A      G+ VI+DE++  + +G  P++P 
Sbjct: 158 LAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIP- 216

Query: 204 GVFGSIVP--VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPV 261
             + ++       L S SK + +P     + +  + +   +++ ++ ++KG  +  S P 
Sbjct: 217 --WSNVARGDWALLTSGSKSFNIPALTGAYGIIENSS--SRDA-YLSALKG-RDGLSSPS 270

Query: 262 TF----IQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE-IPCITCPVKPQGA--M 314
                   AA      +    +   +   LK+      +++    P +     PQ     
Sbjct: 271 VLALTAHIAAY-----QQGAPWLDALRIYLKDNLTYIADKMNAAFPELN-WQIPQSTYLA 324

Query: 315 FVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDG 372
           +    L++  L    DD      L ++E V I+PG T G   + ++R+      + LE G
Sbjct: 325 W----LDLRPLNI--DDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKG 378

Query: 373 LERIKA 378
           +  +  
Sbjct: 379 VAGLIN 384

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} Length = 421

 Score = 96.1 bits (240), Expect = 4e-22
 Identities = 67/378 (17%), Positives = 137/378 (36%), Gaps = 68/378 (17%)

Query: 32  DAVVDAL--RTAH----YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQA 85
             + +A+          YN ++  L      + + D+  ++  Y +  ED+    G   A
Sbjct: 77  PEIKEAIINYGREHIFGYNYFNDDL-----YQAVIDWERKEHDYAVVKEDILFIDGVVPA 131

Query: 86  IEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEK-RWEVDLDGVEA- 143
           I I+L   +  G  +LI  P Y           N+       L     R+E+D + +E  
Sbjct: 132 ISIALQAFSEKGDAVLINSPVYY--PFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKD 189

Query: 144 LADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPM 203
           + D N    ++ +P NP G V+    L KIA   +  G+I+++DE++  LA     +   
Sbjct: 190 IIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHS- 248

Query: 204 GVFGSIVP-----VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAAS 258
               ++        I L S +K + + G +  + +  + +               L    
Sbjct: 249 --LNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNES---------------LRRK- 290

Query: 259 HPVTFIQAAVPRIVDETN--------------EAFFAKIIGLLKETADICYERIKEIPCI 304
               F    +     E                + +  ++  +++    +  + ++    I
Sbjct: 291 ----FQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIKELEAKTKI 346

Query: 305 TCPVKPQGA--MFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRI 360
              ++P+G   ++    L+ S         +   KL  E  V++  G   G   K + R+
Sbjct: 347 K-VMEPEGTYLVW----LDFSAYAI--AQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARL 399

Query: 361 AFAAEPATLEDGLERIKA 378
             A    T+++ L RI +
Sbjct: 400 NVATPKNTVQEALSRIIS 417

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* Length = 392

 Score = 93.7 bits (234), Expect = 2e-21
 Identities = 72/371 (19%), Positives = 135/371 (36%), Gaps = 53/371 (14%)

Query: 32  DAVVDAL--RTAH----YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQA 85
             V  A+          Y   S  L      + + D+   +  Y    ED+    G   A
Sbjct: 47  PEVKQAIHDYAEQLVYGYTYASDEL-----LQAVLDWEKSEHQYSFDKEDIVFVEGVVPA 101

Query: 86  IEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEK-RWEVDLDGVEA- 143
           I I++    + G  +LI  P YP      +   NN +     L  E   +++D + +E  
Sbjct: 102 ISIAIQAFTKEGEAVLINSPVYP--PFARSVRLNNRKLVSNSLKEENGLFQIDFEQLEND 159

Query: 144 LADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPM 203
           + + +    ++ NP NP G V+  + L++I    +   +I+++DE++  L      +V  
Sbjct: 160 IVENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVS- 218

Query: 204 GVFGSIVP-----VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAAS 258
             F ++ P      + L S +K + + G        S    I++N       K      +
Sbjct: 219 --FNTVSPDFKDFALVLSSATKTFNIAG-----TKNS--YAIIENPTLCAQFKHQQLVNN 269

Query: 259 HP------VTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE-IPCITCPVKPQ 311
           H           + A         + +   +  +L+E      E   +  P +   +KPQ
Sbjct: 270 HHEVSSLGYIATETAY-----RYGKPWLVALKAVLEENIQFAVEYFAQEAPRLK-VMKPQ 323

Query: 312 GA--MFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPA 367
           G   ++    L+ S       D      L  +  VI+  G   G   +   R+  AA  +
Sbjct: 324 GTYLIW----LDFSDYGL--TDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAAPKS 377

Query: 368 TLEDGLERIKA 378
            +E+  +RI  
Sbjct: 378 LVEEICKRIVC 388

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* Length = 399

 Score = 93.7 bits (234), Expect = 2e-21
 Identities = 60/376 (15%), Positives = 131/376 (34%), Gaps = 45/376 (11%)

Query: 32  DAVVDAL--RTAH----YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQA 85
             +++ L          Y   +        ++ +  ++     + +  + +  T G   A
Sbjct: 47  PELIEGLKKYLDETVLGYTGPTEEY-----KKTVKKWMKDRHQWDIQTDWIINTAGVVPA 101

Query: 86  IEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEK-RWEVDLDGVEA- 143
           +  ++    +PG  ++I  P Y  Y    A  N   +    +LL +   + +D   +E  
Sbjct: 102 VFNAVREFTKPGDGVIIITPVY--YPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKL 159

Query: 144 LADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPM 203
             D+N  A++  +P NP G V+    LQKI        +++ +DE++  L      +   
Sbjct: 160 SKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTV- 218

Query: 204 GVFGSIVP-----VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAAS 258
             F SI        IT  + SK + + G  +  ++  +P+  ++   F  S      +  
Sbjct: 219 --FQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPD--IRER-FTKSRDA--TSGM 271

Query: 259 HPVTF----IQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE-IPCITCPVKPQGA 313
              T      +        +    +    I ++ +   I  +  +   P I      +G 
Sbjct: 272 PFTTLGYKACEICY-----KECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIK-APLIEGT 325

Query: 314 MFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLED 371
                 ++   L+   D       +  +  +    G   G     + RI  AA  + +++
Sbjct: 326 YLQW--IDFRALKM--DHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQE 381

Query: 372 GLERIKAFCQRHAKKQ 387
            LER+    +    + 
Sbjct: 382 SLERLNKALKDLKNRH 397

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} Length = 391

 Score = 93.3 bits (233), Expect = 3e-21
 Identities = 63/372 (16%), Positives = 132/372 (35%), Gaps = 55/372 (14%)

Query: 32  DAVVDAL--RTAH----YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQA 85
             ++ ++  +       Y             + +AD+   +   +   +      G   A
Sbjct: 43  PEIMASMEEKLKVAAFGYESVPAEY-----YKAVADWEEIEHRARPKEDWCVFASGVVPA 97

Query: 86  IEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEK-RWEVDLDGVEA- 143
           I   +     PG  IL+  P Y     ++    N       DL+ E  ++ V+   +E  
Sbjct: 98  ISAMVRQFTSPGDQILVQEPVYN--MFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEK 155

Query: 144 LADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPM 203
           LA  +   +V  NP NP G  +S + +++IA       +++I+DE++  L        P 
Sbjct: 156 LATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITP- 214

Query: 204 GVFGSIVP-----VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAA- 257
               ++       V++L S SK + +       L  +    I+ N       +     A 
Sbjct: 215 --AFTVDWDAKNWVVSLISPSKTFNLAA-----LHAA--CAIIPNPDLRARAEESFFLAG 265

Query: 258 -SHPVTF----IQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE-IPCITCPVKPQ 311
              P         AA      E    +  ++  +L++      E + + +P +   +   
Sbjct: 266 IGEPNLLAIPAAIAAY-----EEGHDWLRELKQVLRDNFAYAREFLAKEVPEVK-VLDSN 319

Query: 312 GA--MFVMVKLNVSMLEDIGDDL-EFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEP 366
            +   +    +++S L    +D  ++  +      +II  G         ++RI  A   
Sbjct: 320 ASYLAW----VDISALGMNAEDFCKYLREKTG---LIISAGNGYRGNGHEFVRINLACPK 372

Query: 367 ATLEDGLERIKA 378
             + DG++R+K 
Sbjct: 373 ELVIDGMQRLKQ 384

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* Length = 391

 Score = 93.0 bits (232), Expect = 3e-21
 Identities = 74/369 (20%), Positives = 142/369 (38%), Gaps = 50/369 (13%)

Query: 32  DAVVDAL--RTAH----YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQA 85
             ++D+L  R       Y     +         I ++L R   +K+  E +  + G   A
Sbjct: 48  PCIIDSLKNRLEQEIYGYTTRPDSY-----NESIVNWLYRRHNWKIKSEWLIYSPGVIPA 102

Query: 86  IEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEK--RWEVDLDGVEA 143
           I + ++ L +    I+I  P Y     ++   NNN E     L   +   + +D + +E 
Sbjct: 103 ISLLINELTKANDKIMIQEPVYS--PFNSVVKNNNRELIISPLQKLENGNYIMDYEDIEN 160

Query: 144 LADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPM 203
              +  + I + NP NP G V++   L+K+        + +I+DE+++ +      ++P 
Sbjct: 161 KIKDVKLFI-LCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIP- 218

Query: 204 GVFGSIVP-----VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAAS 258
               SI        IT  + +K + + G +  ++V  D           D+         
Sbjct: 219 --MASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEK--DYKL-LDDAFTR--IDIK 271

Query: 259 HPVTF----IQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE-IPCITCPVKPQGA 313
               F     +A+         E++    +  L+   D   + I E +P +    KP+G 
Sbjct: 272 RNNCFSLVATEASY-----NNGESWLESFLEYLESNIDFAIKYINENMPKLK-VRKPEGT 325

Query: 314 --MFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATL 369
             ++    ++ S L     D E    L ++  V +  G + G+    + RI  A   + L
Sbjct: 326 YLLW----VDFSALGL--SDEELESILVQKGKVALNQGNSFGIGGSGYQRINLACPRSML 379

Query: 370 EDGLERIKA 378
           E+ L RIK 
Sbjct: 380 EEALIRIKN 388

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* Length = 356

 Score = 86.5 bits (215), Expect = 5e-19
 Identities = 59/331 (17%), Positives = 117/331 (35%), Gaps = 47/331 (14%)

Query: 37  ALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARP 96
            L     N Y P     +     A Y        + PE V ++ G  + IE+ +     P
Sbjct: 46  QLTQQTLNRY-PECQPKAVIENYAQYAG------VKPEQVLVSRGADEGIELLIRAFCEP 98

Query: 97  GA-NILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVII 155
           G   IL   P Y +Y + A      +E R    L    W++DL G+     +    + + 
Sbjct: 99  GKDAILYCPPTYGMYSVSAET--IGVECRTVPTLDN--WQLDLQGISD-KLDGVKVVYVC 153

Query: 156 NPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVP---- 211
           +P NP G + + Q  + +    R   I+V  DE Y         + P       +     
Sbjct: 154 SPNNPTGQLINPQDFRTLLELTRGKAIVVA-DEAY-------IEFCPQASLAGWLAEYPH 205

Query: 212 VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPV-TFIQAAVPR 270
           +  L ++SK + + G R G+ + ++   ++     +  +      A +P+ T +     +
Sbjct: 206 LAILRTLSKAFALAGLRCGFTLANEE--VIN---LLMKVI-----APYPLSTPVADIAAQ 255

Query: 271 IVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGD 330
            +         + +  +    +     +KEIPC+   V      +++ +           
Sbjct: 256 ALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVE-QVFDSETNYILAR--------FKA 306

Query: 331 DLEFCLKLAKEESVIILP-GRTVGMKNWLRI 360
                  L  ++ +I+    +   +   LRI
Sbjct: 307 SSAVFKSLW-DQGIILRDQNKQPSLSGCLRI 336

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} Length = 363

 Score = 86.1 bits (214), Expect = 8e-19
 Identities = 71/347 (20%), Positives = 114/347 (32%), Gaps = 49/347 (14%)

Query: 18  PLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVY 77
           PLG S             ++        Y P     S R+ +AD+        L  E++ 
Sbjct: 43  PLGTSKK-----VAAIQANSSVETEI--Y-PDGWASSLRKEVADFYQ------LEEEELI 88

Query: 78  LTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVD 137
            T G  + IE+   VL     N ++  P +  Y  +A        A   ++   +  E D
Sbjct: 89  FTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQNALIEG----AEVREIPLLQDGEHD 144

Query: 138 LDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS 197
           L+G+    DE T  + I NP NP GN      +Q       +  ++V+ DE Y       
Sbjct: 145 LEGMLNAIDEKTTIVWICNPNNPTGNYIELADIQAFLDRVPS-DVLVVLDEAYIEYV-TP 202

Query: 198 TPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAA 257
            P     +  +   +I   + SK + +   R+G+ +                I   LN  
Sbjct: 203 QPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKE------------IIRQLNIV 250

Query: 258 SHP--VTFI--QAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGA 313
             P   T I  + A+  I D   +AF  +                K    +     P   
Sbjct: 251 RPPFNTTSIGQKLAIEAIKD---QAFIGECRTSNANGIKQYEAFAKRFEKVKLY--PANG 305

Query: 314 MFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRI 360
            FV++ L         +       L K    I   G  +G    +RI
Sbjct: 306 NFVLIDLG-------IEAGTIFSYLEK-NGYITRSGAALGFPTAVRI 344

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Length = 350

 Score = 85.7 bits (213), Expect = 8e-19
 Identities = 55/351 (15%), Positives = 105/351 (29%), Gaps = 62/351 (17%)

Query: 18  PLGVSLLSDSTVAEDAVVDALRTA--HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPED 75
             G           D +   L         Y P     + R+ +A          +    
Sbjct: 26  TDGDK---------DHLEKHLVENLNCIRHY-PEPDAGTLRQMLAKR------NSVDNNA 69

Query: 76  VYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWE 135
           + +T G + A        A  G+  LI  P +  YE          E   Y    +    
Sbjct: 70  ILVTNGPTAAFY--QIAQAFRGSRSLIAIPSFAEYEDAC--RMYEHEVCFYPSNED---- 121

Query: 136 VDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAF 195
                +      N     + NP NP G +     + ++     +     + D+ Y    F
Sbjct: 122 -----IGEADFSNMDFCWLCNPNNPDGRLLQRTEILRLL--NDHPDTTFVLDQSYVS--F 172

Query: 196 GSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLN 255
            +   +          ++ + S S  + +PG R+G++V +                  + 
Sbjct: 173 TTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVAN------------KDFMKRVA 220

Query: 256 AASHP--V-TFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQG 312
           A S P  V      A   I+   + A F   I   +         +  +  +   V P G
Sbjct: 221 AFSTPWAVNALAIEAAKFILI--HPAQFTLPIRKWQRNTVDFITALNRLDGVE--VHPSG 276

Query: 313 AMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIA 361
             F +++L        G   E    + +E +++I          ++++RI 
Sbjct: 277 TTFFLLRL------KKGTAAELKKYMLEEYNMLIRDASNFRGLDESYVRIT 321

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369

 Score = 84.9 bits (211), Expect = 2e-18
 Identities = 65/337 (19%), Positives = 121/337 (35%), Gaps = 44/337 (13%)

Query: 30  AEDAVVDALRTA--HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE 87
               +V  +       N Y P       R  +A Y+ +     ++ ++++   G ++ ++
Sbjct: 48  LVADLVATVDKIATELNRY-PERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQ 106

Query: 88  ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE 147
             L     PG   L  +P Y ++ I A G   + E        +  + +D+D        
Sbjct: 107 QLLQAFGGPGRTALGFQPSYSMHPILAKG--THTEFIAVSRGAD--FRIDMDVALEEIRA 162

Query: 148 NTVAIVII-NPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF 206
               IV +  P NP G+V S   +++I   A   GI+++ DE Y    F  +P     + 
Sbjct: 163 KQPDIVFVTTPNNPTGDVTSLDDVERIINVAP--GIVIV-DEAYAE--FSPSPSATTLLE 217

Query: 207 GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHP--VTFI 264
                ++   ++SK +   G RLG+ V ++P           +    +     P  ++ +
Sbjct: 218 KYPTKLVVSRTMSKAFDFAGGRLGYFV-ANP-----------AFIDAVMLVRLPYHLSAL 265

Query: 265 -QAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVS 323
            QAA    +   + A     +  L         R++E+      V P  + FV       
Sbjct: 266 SQAAAIVALR--HSADTLGTVEKLSVERVRVAARLEELG---YAVVPSESNFVFFGDF-- 318

Query: 324 MLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRI 360
                 D          +  V+I   R VG+   LR 
Sbjct: 319 -----SDQHAAWQAF-LDRGVLI---RDVGIAGHLRT 346

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} Length = 367

 Score = 80.7 bits (200), Expect = 5e-17
 Identities = 72/351 (20%), Positives = 133/351 (37%), Gaps = 53/351 (15%)

Query: 18  PLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVY 77
           P  +            +   L     N Y P     + R  + + +        +  +V 
Sbjct: 41  PYRLPPA-----LRSELAARLGEVALNRY-PVPSSEALRAKLKEVMQVP-----AGMEVL 89

Query: 78  LTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVD 137
           L  G  + I +     ARPGA ++ P PG+ +Y + A      LE     L  +  + +D
Sbjct: 90  LGNGSDEIISMLALAAARPGAKVMAPVPGFVMYAMSAQF--AGLEFVGVPLRAD--FTLD 145

Query: 138 LDGVEALADENTVAIVII-NPGNPCGNVFSYQHLQKIARTA--RNLGIIVIADEVYNHLA 194
              + A   E+  AIV +  P NP GN+F    ++ I R A       +V+ DE Y    
Sbjct: 146 RGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQP-- 203

Query: 195 FGSTPYVP-MGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKG- 252
           F    ++  +  FG+++ + T+   SK   + G RLG++   DP  +      +D ++  
Sbjct: 204 FAQESWMSRLTDFGNLLVMRTV---SK-LGLAGIRLGYVA-GDPQWL----EQLDKVRPP 254

Query: 253 -CLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ 311
             +N  +      +A     ++  + A   +    L+       E +     +T  V P 
Sbjct: 255 YNVNVLT------EATALFALE--HVAVLDEQAAQLRAERSRVAEGMAAHGGVT--VFPS 304

Query: 312 GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVII--LPGRTVGMKNWLRI 360
            A F++ ++         D  +   +L     V+I  +      + N LR+
Sbjct: 305 AANFLLARV--------PDAAQTFDRL-LARKVLIKNVSKMHPLLANCLRV 346

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} Length = 354

 Score = 78.0 bits (193), Expect = 3e-16
 Identities = 69/350 (19%), Positives = 123/350 (35%), Gaps = 53/350 (15%)

Query: 18  PLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVY 77
           PLG+S       A+ A  DA+  A+   Y     +      +A +        +    + 
Sbjct: 27  PLGMSPK-----AQAAARDAVVKANR--Y-AKNEILMLGNKLAAHHQ------VEAPSIL 72

Query: 78  LTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVD 137
           LT G S+ I  ++   A   A ++IP   Y   E  A  +      +   +     W  D
Sbjct: 73  LTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAKIAG----MKVTKVKMLDNWAFD 128

Query: 138 LDGVEALADENTVA-IVII-NPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAF 195
           ++G++A     +   IV + NP NP G +     ++    +      + I DE Y    F
Sbjct: 129 IEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIEPWIASKPA-NTMFIVDEAYAE--F 185

Query: 196 GSTPYVPMG---VFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKG 252
            + P        +      +I L + SK   + G R+G+ V + P  I      +     
Sbjct: 186 VNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAV-AHPTVI----ALMGRYVA 240

Query: 253 --CLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKP 310
              +N +      + AA+  + D    AF          +  I  + ++++     P  P
Sbjct: 241 GEKINFSG-----VDAALASMND---SAFITYSKKSNDVSRQILLKALEDLK---LPYLP 289

Query: 311 QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRI 360
               FV  +L            ++   +A +  V+I         NW RI
Sbjct: 290 SEGNFVFHQLV-------VPLKDYQTHMA-DAGVLIGRAFP-PADNWCRI 330

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} Length = 337

 Score = 74.5 bits (184), Expect = 5e-15
 Identities = 53/352 (15%), Positives = 98/352 (27%), Gaps = 72/352 (20%)

Query: 18  PLGVSLLSDSTVAEDAVVDALRTA--HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPED 75
           P  V            V  A+  A    N Y P    P   R +A++      +    ++
Sbjct: 27  PEAVE---------PRVQAAIAAAAARINRY-PFDAEPRVMRKLAEH------FSCPEDN 70

Query: 76  VYLTLGC-SQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRW 134
           +   L                     +   PG+  Y    A S      RH+++      
Sbjct: 71  L--MLVRGIDEC-FDRISAEFSSMRFVTAWPGFDGYRARIAVSG----LRHFEIGLTDDL 123

Query: 135 EVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLA 194
            +D +            +V+ NP NP G   S     ++ +  +  G ++I DE Y    
Sbjct: 124 LLDPND--LAQVSRDDCVVLANPSNPTGQALS---AGELDQLRQRAGKLLI-DETYVD-- 175

Query: 195 FGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL 254
           + S     +         +   S SK + + G RLG L                 +   +
Sbjct: 176 YSSFRARGLAYGE---NELVFRSFSKSYGLAGLRLGALFGPSE------------LIAAM 220

Query: 255 NAASHPVTF------IQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPV 308
                          + A    + +   +      I           + ++ +      V
Sbjct: 221 KRKQWF--CNVGTLDLHALEAALDN---DRAREAHIAKTLAQRRRVADALRGLG---YRV 272

Query: 309 KPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRI 360
               A FV+V+                  L  E  + +      G+ + +RI
Sbjct: 273 ASSEANFVLVEN--------AAGERTLRFLR-ERGIQVKDAGQFGLHHHIRI 315

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} Length = 365

 Score = 71.4 bits (176), Expect = 5e-14
 Identities = 61/352 (17%), Positives = 114/352 (32%), Gaps = 56/352 (15%)

Query: 18  PLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVY 77
           P G         A + +      AH   Y P   +   +  +A        YK+  E++ 
Sbjct: 41  PFGTPPK-----AIECLRQNANKAHL--Y-PDDSMIELKSTLAQK------YKVQNENII 86

Query: 78  LTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVD 137
           +  G  Q IE ++          L     + +YEI+A       +      +       +
Sbjct: 87  IGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAKQ--CGAKCYKTQSITHNL--DE 142

Query: 138 LDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS 197
              +     +    I +  P NP G         +  +       +V+ D  YN   F S
Sbjct: 143 FKKLYETHKDEIKLIFLCLPNNPLGECLDASEATEFIKGVNE-DCLVVIDAAYNE--FAS 199

Query: 198 TPYVPMGVFGSIV-----PVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKG 252
                  +    +      V+ LG+ SK + + G R+G+ + +              I  
Sbjct: 200 FKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIANAN------------IIS 247

Query: 253 CLNAASHP--VTFI--QAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPV 308
                  P  V+ +  +AAV  + D   + F  K +       ++  E  K+       +
Sbjct: 248 AFYKLRAPFNVSNLALKAAVAAMDD---DEFTEKTLENNFSQMELYKEFAKKHN---IKI 301

Query: 309 KPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRI 360
                 F+          D  +  +   KL K + +II   ++ G+ N +RI
Sbjct: 302 IDSYTNFITYFF------DEKNSTDLSEKLLK-KGIIIRNLKSYGL-NAIRI 345

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} Length = 360

 Score = 68.3 bits (168), Expect = 7e-13
 Identities = 58/355 (16%), Positives = 106/355 (29%), Gaps = 70/355 (19%)

Query: 18  PLGVSLLSDSTVAEDAVVDALRTA------HYNCYSPTLGVPSARRGIADYLNRDLPYKL 71
           P   S           VV A+             Y P+      R    +          
Sbjct: 37  PYPPS---------PEVVKAILEELGPDGAALRIY-PSASSQKLREVAGELYG------F 80

Query: 72  SPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPE 131
            P  + +  G  + +   +   A  G  I    P Y  Y   A         R + L   
Sbjct: 81  DPSWIIMANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAEV--QGARVRTFGL--- 135

Query: 132 KRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYN 191
                D                +  P  P G  F    L+ I   AR    +++ DE Y 
Sbjct: 136 ---TGDFRIAGFPERYEGKVFFLTTPNAPLGPSFP---LEYIDELARRCAGMLVLDETYA 189

Query: 192 HLAFGSTPYVPMGVFGSIVP----VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV 247
              F  +  + +      V     V+   ++SK + + G R+G  + + P  I      +
Sbjct: 190 E--FAESNALEL------VRRHENVVVTRTLSKSYSLAGMRIGLAI-ARPEVI----AAL 236

Query: 248 DSIKGC--LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCIT 305
           D I+    L+  +       A V  + D   +A+ ++    ++ET +     ++ I    
Sbjct: 237 DKIRDHYNLDRLA-----QAACVAALRD---QAYLSECCRRIRETREWFTTELRSIG--- 285

Query: 306 CPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRI 360
             V P    ++         + + D L           V++       + + +RI
Sbjct: 286 YDVIPSQGNYLFATPPDRDGKRVYDGL-------YARKVLVRHFSDPLLAHGMRI 333

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* Length = 335

 Score = 65.3 bits (160), Expect = 6e-12
 Identities = 59/340 (17%), Positives = 110/340 (32%), Gaps = 63/340 (18%)

Query: 27  STVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI 86
                D V   L +     Y            I  YL+ D    LS  +V +  G  + I
Sbjct: 34  PEDLVDEVFRRLNSDALRIY-YDSPDEELIEKILSYLDTD---FLSKNNVSVGNGADEII 89

Query: 87  EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD 146
            +    +       +   P Y  Y I A       +     L        DL  +  +  
Sbjct: 90  YV----MMLMFDRSVFFPPTYSCYRIFAKA--VGAKFLEVPLTK------DLR-IPEVNV 136

Query: 147 ENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF 206
                + I NP NP G+VF  + +++I +T       V  DE Y    F    YV     
Sbjct: 137 GEGDVVFIPNPNNPTGHVFEREEIERILKTG----AFVALDEAYYE--FHGESYVDF--- 187

Query: 207 GSIVP----VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKG--CLNAASHP 260
              +     +  + + SK + +   R+G++V +    I       + ++    ++  S  
Sbjct: 188 ---LKKYENLAVIRTFSKAFSLAAQRVGYVV-ASEKFI----DAYNRVRLPFNVSYVS-- 237

Query: 261 VTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKL 320
               Q      +D  +   F +    + E  +     ++E+      +      FV V +
Sbjct: 238 ----QMFAKVALD--HREIFEERTKFIVEERERMKSALREMG---YRITDSRGNFVFVFM 288

Query: 321 NVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRI 360
                E + + L       + ++V +   R    +  +RI
Sbjct: 289 EKEEKERLLEHL-------RTKNVAV---R--SFREGVRI 316

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} Length = 412

 Score = 47.5 bits (114), Expect = 4e-06
 Identities = 24/125 (19%), Positives = 39/125 (31%), Gaps = 32/125 (25%)

Query: 85  AIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDL----LPEKRWEV---- 136
           A   +L  L RPG  ++               +   L  +   L    L      V    
Sbjct: 83  ATFAALLALLRPGDEVV---------------AAKGLFGQTIGLFGQVLSLMGVTVRYVD 127

Query: 137 -DLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAF 195
            + + V       T A+ +    NP   V     L+ +A  A   G+ ++ D   N   F
Sbjct: 128 PEPEAVREALSAKTRAVFVETVANPALLVPD---LEALATLAEEAGVALVVD---N--TF 179

Query: 196 GSTPY 200
           G+   
Sbjct: 180 GAAGA 184

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} Length = 430

 Score = 43.7 bits (104), Expect = 6e-05
 Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 26/122 (21%)

Query: 85  AIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEV------DL 138
           AI  ++  LAR G +++       L+      + +  +      LP    EV      D 
Sbjct: 109 AISTAILTLARAGDSVVTTDR---LF----GHTLSLFQK----TLPSFGIEVRFVDVMDS 157

Query: 139 DGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGST 198
             VE   DE T  + +    NP   V     L+ +++     GI ++ D     +     
Sbjct: 158 LAVEHACDETTKLLFLETISNPQLQVAD---LEALSKVVHAKGIPLVVD---TTMT---P 208

Query: 199 PY 200
           PY
Sbjct: 209 PY 210

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 21/162 (12%), Positives = 50/162 (30%), Gaps = 36/162 (22%)

Query: 55  ARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHA 114
               +  +L  D           +T G  +A    +  LA+  A +++          + 
Sbjct: 59  IHNQLPKFLGCD--------VARVTNGAREAKFAVMHSLAKKDAWVVMDE-----NCHY- 104

Query: 115 AGSN------NNLEARHYDLLPEKRWEVDLDGVEALADENT----VAIVIIN-PGNPCGN 163
             S+        L            + +  +      +E      V + +I  P    GN
Sbjct: 105 --SSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGN 162

Query: 164 VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV 205
           +     ++KIA+      + ++ +  Y      +   +P+ +
Sbjct: 163 L---PDVKKIAKVCSEYDVPLLVNGAY------AIGRMPVSL 195

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* Length = 415

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 14/107 (13%)

Query: 85  AIEISLSVLARPGANILIPRPGY-PLYE-IHAAGSNNNLEARHYDLLPEKRWEVDLDGVE 142
           A+  S+      G ++L+    Y P  +      S   +    +D L           + 
Sbjct: 109 AVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL-------IGADIV 161

Query: 143 ALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNL--GIIVIAD 187
                NT  + + +PG+          +  I    R++    I++ D
Sbjct: 162 KHLQPNTKIVFLESPGSI---TMEVHDVPAIVAAVRSVVPDAIIMID 205

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* Length = 398

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 20/124 (16%), Positives = 42/124 (33%), Gaps = 30/124 (24%)

Query: 85  AIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEV-------- 136
           AI  +L  L + G +I+     Y        G  +   +         ++ +        
Sbjct: 91  AITTTLLTLCQQGDHIVSASAIY--------GCTHAFLSHSM-----PKFGINVRFVDAA 137

Query: 137 DLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFG 196
             + + A     T  + I  P NP  ++     ++ +A  A   G +++ D  +      
Sbjct: 138 KPEEIRAAMRPETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTF------ 188

Query: 197 STPY 200
            +PY
Sbjct: 189 MSPY 192

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	387
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	100.0
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	100.0
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	100.0
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	100.0
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	100.0
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	100.0
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	100.0
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	100.0
3nra_A	407	Aspartate aminotransferase; structural genomics, j	100.0
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	100.0
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	100.0
3ele_A	398	Amino transferase; RER070207001803, structural gen	100.0
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	100.0
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	100.0
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	100.0
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	100.0
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	100.0
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	100.0
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	100.0
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	100.0
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	100.0
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	100.0
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	100.0
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	100.0
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	100.0
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	100.0
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	100.0
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	100.0
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	100.0
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	100.0
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	100.0
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	100.0
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	100.0
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	100.0
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	100.0
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	100.0
1vp4_A	425	Aminotransferase, putative; structural genomics, j	100.0
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	100.0
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	100.0
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	100.0
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	100.0
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	100.0
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	100.0
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	100.0
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	100.0
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	100.0
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	100.0
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	100.0
3rq1_A	418	Aminotransferase class I and II; structural genomi	100.0
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	100.0
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	100.0
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	100.0
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	100.0
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	100.0
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	100.0
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	100.0
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	100.0
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	100.0
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	100.0
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	100.0
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	100.0
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	100.0
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	100.0
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	100.0
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	100.0
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	100.0
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	100.0
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	100.0
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	100.0
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	100.0
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	100.0
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	100.0
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	100.0
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	100.0
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	100.0
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	100.0
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	100.0
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	100.0
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	100.0
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	100.0
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	100.0
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	100.0
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	100.0
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	100.0
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	100.0
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	100.0
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	100.0
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	100.0
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	100.0
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	100.0
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	100.0
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	100.0
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	100.0
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	100.0
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	100.0
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	100.0
1iug_A	352	Putative aspartate aminotransferase; wild type, py	100.0
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	100.0
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	100.0
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	100.0
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	100.0
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	100.0
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	100.0
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	100.0
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	100.0
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	100.0
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	100.0
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	100.0
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	100.0
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	100.0
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	100.0
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	100.0
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	100.0
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	100.0
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	100.0
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	100.0
1svv_A	359	Threonine aldolase; structural genomics, structura	100.0
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	100.0
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	100.0
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	100.0
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.98
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.98
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.98
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.97
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.97
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.97
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.97
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.97
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.97
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.97
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.97
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.97
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.97
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.97
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.97
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.97
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.97
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.97
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.97
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.97
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.97
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.97
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.97
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.97
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.97
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.97
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.97
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.97
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.97
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.97
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.97
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.97
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.97
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.97
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.97
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.97
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.97
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.97
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.96
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.96
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.96
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.96
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.96
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.96
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.96
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.96
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.96
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.96
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.96
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.96
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.96
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.96
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.96
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.96
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.96
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.96
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.96
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.96
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.96
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.96
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.96
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.96
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.96
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.96
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.96
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.96
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.96
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.96
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.96
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.95
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.95
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.95
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.95
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.95
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.95
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.95
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.95
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.95
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.95
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.95
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.95
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.95
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.95
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.95
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.95
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.95
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.94
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.94
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.94
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.94
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.94
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.93
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.93
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.93
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.93
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.92
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.92
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.92
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.91
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.91
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.91
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.85
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.91
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.91
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.9
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.9
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.9
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.89
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.84
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.83
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.8
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.79
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	99.79
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.76
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.75
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.73
1ofu_X	119	SULA, hypothetical protein PA3008; bacterial cell	88.66
1oft_A	161	SULA, hypothetical protein PA3008; bacterial cell	88.36

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=100.00  E-value=2.7e-50  Score=379.58  Aligned_cols=372  Identities=37%  Similarity=0.711  Sum_probs=320.9

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      .+++++.|.|.....+++++.+.+++.+.+.......|++..+..++|+.+++++... +.++++++|++|+|+++|+..
T Consensus        55 ~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~-~~~~~~~~v~~t~g~t~al~~  133 (427)
T 3dyd_A           55 TMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCP-EAPLEAKDVILTSGCSQAIDL  133 (427)
T ss_dssp             CCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCBT-TBCCCGGGEEEESSHHHHHHH
T ss_pred             CEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHHHHHHHhhc-CCCCChHHEEEecCcHHHHHH
Confidence            3577888887555568999999999999988765568988889999999999999765 556788999999999999999


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      ++.+++++||+|+++.|+|.++...++  ..|.++..+++.++.++.+|+++++++++++++++++++|+||||..+|.+
T Consensus       134 ~~~~l~~~gd~vl~~~p~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~  211 (427)
T 3dyd_A          134 CLAVLANPGQNILVPRPGFSLYKTLAE--SMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKR  211 (427)
T ss_dssp             HHHHHCCTTCEEEEEESCCTHHHHHHH--HTTCEEEEEEEEGGGTTEECHHHHHSSCCTTEEEEEEESSCTTTCCCCCHH
T ss_pred             HHHHhcCCCCEEEEcCCCchhHHHHHH--HcCCEEEEEecccccCCCCCHHHHHHHhccCCCEEEEECCCCCCCCCCCHH
Confidence            999999999999999999999999999  999999999987767788999999999988899999999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD  248 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~  248 (387)
                      ++++|+++|+++|+++|+|++|+++.+++..+.++..+..+.++++++|+||.|+++|+|+||++++++.... .+++.+
T Consensus       212 ~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~-~~~i~~  290 (427)
T 3dyd_A          212 HLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIF-GNEIRD  290 (427)
T ss_dssp             HHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGGGCCEEEEEECSTTSS-HHHHHH
T ss_pred             HHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcCcceEEEEecCcchhh-HHHHHH
Confidence            9999999999999999999999999988877777777777677899999999999999999999998532111 124666


Q ss_pred             HHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCC
Q 038416          249 SIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDI  328 (387)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  328 (387)
                      .+.......++++++.+.++..+|+...+.++.++.++++++++.+.+.|+++|++. +..|.+|+|+|+.++....++.
T Consensus       291 ~l~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~p~~g~~~~~~l~~~~~~~~  369 (427)
T 3dyd_A          291 GLVKLSQRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLR-PVRPSGAMYLMVGIEMEHFPEF  369 (427)
T ss_dssp             HHHHHHHHHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEE-EECCSBTTEEEEEECGGGCTTC
T ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCce-ecCCCeeEEEEEecCHhhcCCC
Confidence            666554345788999999999999865678889999999999999999999998888 4478999999998875433333


Q ss_pred             CcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHHhhh
Q 038416          329 GDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       329 ~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      .+..+++..+++++||.+.||..|+.++++||+++.+++++++++++|.++++++++
T Consensus       370 ~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~~~~~  426 (427)
T 3dyd_A          370 ENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVITVPEVMMLEACSRIQEFCEQHYH  426 (427)
T ss_dssp             SSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEESCSCHHHHHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEECCCHHHHHHHHHHHHHHHHHhhc
Confidence            356788888887889999999999889999999999999999999999999988763

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=100.00  E-value=7.8e-49  Score=364.82  Aligned_cols=349  Identities=22%  Similarity=0.386  Sum_probs=298.0

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      ..++++.|.+    ++++++.+.+++.+.+... ..+|++..|..++|+.+++++...++..+++++|++|+|+++++..
T Consensus        32 ~~i~l~~~~~----~~~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~  106 (385)
T 1b5p_A           32 DLVALTAGEP----DFDTPEHVKEAARRALAQG-KTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFN  106 (385)
T ss_dssp             CCEECCCSSC----SSCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHH
T ss_pred             CEEEecCCCC----CCCCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHH
Confidence            3567777766    7788899999999988654 3478887789999999999999888877888999999999999999


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      ++.+++++||+|+++.|+|..+...++  ..|.+++.+++++++++.+|++++++++++++++|++++|+||||.++|.+
T Consensus       107 ~~~~l~~~gd~Vlv~~p~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~  184 (385)
T 1b5p_A          107 LFQAILDPGDEVIVLSPYWVSYPEMVR--FAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKE  184 (385)
T ss_dssp             HHHHHCCTTCEEEEEESCCTHHHHHHH--HTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHH
T ss_pred             HHHHhcCCCCEEEEcCCCchhHHHHHH--HcCCEEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeCCCCCCCCCcCHH
Confidence            999999999999999999999999999  999999999987556778999999999988899999999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD  248 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~  248 (387)
                      ++++|+++|+++|+++|+|++|+.+.+++ ...++..+.. +++++++|+||.|+++|+|+||+++++        ++++
T Consensus       185 ~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~-~~~i~~~s~SK~~~~~G~RiG~~~~~~--------~~~~  254 (385)
T 1b5p_A          185 VLEALARLAVEHDFYLVSDEIYEHLLYEG-EHFSPGRVAP-EHTLTVNGAAKAFAMTGWRIGYACGPK--------EVIK  254 (385)
T ss_dssp             HHHHHHHHHHHTTCEEEEECTTTTCBSSS-CCCCGGGTCT-TTEEEEEESTTTTTCGGGCCEEEECCH--------HHHH
T ss_pred             HHHHHHHHHHHcCCEEEEEccchhcccCC-CCCCHHHcCC-CCEEEEEechhhcCCcccceEEEEeCH--------HHHH
Confidence            99999999999999999999999988876 4455555544 679999999999999999999999865        6888


Q ss_pred             HHHhhhh-ccCCcchHHHHHHHHHhhhc--cHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccc
Q 038416          249 SIKGCLN-AASHPVTFIQAAVPRIVDET--NEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML  325 (387)
Q Consensus       249 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~  325 (387)
                      .+..... ...+++.+.|.++..+++..  ...++++..++++++++.+.+.|+++ ++. +..|.+++++|+.++... 
T Consensus       255 ~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~~~~~~~~~~~~~-  331 (385)
T 1b5p_A          255 AMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLK-AVRPSGAFYVLMDTSPIA-  331 (385)
T ss_dssp             HHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCC-BCCCSBTTEEEEECTTTC-
T ss_pred             HHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCe-ecCCCeeEEEEEecCCCC-
Confidence            7776543 34577888999888888641  24668888999999999999999988 787 447888889998885311 


Q ss_pred             cCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHH
Q 038416          326 EDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       326 ~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~  381 (387)
                         .+..++...++ ++||.+.||..|+.++++||+++.+++++++++++|+++++
T Consensus       332 ---~~~~~l~~~l~-~~gv~v~~g~~f~~~~~iRis~~~~~~~i~~~l~~l~~~l~  383 (385)
T 1b5p_A          332 ---PDEVRAAERLL-EAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARVLG  383 (385)
T ss_dssp             ---SSHHHHHHHHH-HTTEECEESGGGTCTTEEEEECCSCHHHHHHHHHHGGGGC-
T ss_pred             ---CCHHHHHHHHH-HCCeEEecccccCCCCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence               14667777776 77999999999877889999999889999999999987764

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=100.00  E-value=2.3e-48  Score=365.52  Aligned_cols=373  Identities=32%  Similarity=0.585  Sum_probs=308.5

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhh------cCCCCCCCCCEEEcCC
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNR------DLPYKLSPEDVYLTLG   81 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~------~~~~~~~~~~i~~~~g   81 (387)
                      +.+++++.|.|..++++++++.+.+++.+.+.......|++..+..++|+.+++++.+      ..+.++++++|++|+|
T Consensus        33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g  112 (416)
T 1bw0_A           33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSG  112 (416)
T ss_dssp             SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESH
T ss_pred             CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCC
Confidence            4567888888866667899999999999998765455788777899999999999982      2455577899999999


Q ss_pred             hHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCc
Q 038416           82 CSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPC  161 (387)
Q Consensus        82 ~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~npt  161 (387)
                      +++++..++.+++++||+|+++.|+|+++...++  ..|.+++.+++++++++.+|+++|+++++++++++++++|+|||
T Consensus       113 ~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~npt  190 (416)
T 1bw0_A          113 GSHGILMAITAICDAGDYALVPQPGFPHYETVCK--AYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPC  190 (416)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH--HTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTT
T ss_pred             hHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHH--HcCcEEEEeecCcccCCCCCHHHHHHHhccCCeEEEEeCCCCCC
Confidence            9999999999999999999999999999999999  99999999988655567789999999998889999999999999


Q ss_pred             cccCCHHHHHHHHHHHHhcCcEEeecccccccccCCC----CCccccccCCCccEEEEecCcccccccccceEEEEeeCC
Q 038416          162 GNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGST----PYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDP  237 (387)
Q Consensus       162 G~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~  237 (387)
                      |.++|.+++++|+++|+++|+++|+|++|+++.+++.    ...++..+....++++++|+||.|+++|+|+||++++++
T Consensus       191 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~  270 (416)
T 1bw0_A          191 GSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDP  270 (416)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECT
T ss_pred             CcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCCCCCceEEEEEeeCc
Confidence            9999999999999999999999999999999888775    455565555555789999999999999999999999763


Q ss_pred             CCcccchhHHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEE
Q 038416          238 NGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVM  317 (387)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~  317 (387)
                      ..+.  ..+...++......++++++.+.++..+|+...+.++++..++++++++.+.+.|+++|++. +..|.+|+|+|
T Consensus       271 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~~~~~~~  347 (416)
T 1bw0_A          271 HGNG--PSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLA-PTMPRGAMYLM  347 (416)
T ss_dssp             TCSC--HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEE-ECCCCBTTEEE
T ss_pred             hhhH--HHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-ccCCCeeEEEE
Confidence            1111  02333333322234578889999999988854567888999999999999999999988887 43677899999


Q ss_pred             EecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHHhhh
Q 038416          318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      ++++....++..+..++...+++++||.+.||..|+.++++||+++.+++++++++++|.++++++++
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~~~~e~l~~~l~~l~~~l~~~~~  415 (416)
T 1bw0_A          348 SRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYREAVERIKAFCQRHAA  415 (416)
T ss_dssp             EEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHHHHBC
T ss_pred             EeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhhc
Confidence            88864222111245677777777789999999988878899999998899999999999999987654

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=100.00  E-value=7.7e-47  Score=352.20  Aligned_cols=350  Identities=23%  Similarity=0.358  Sum_probs=291.9

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      +.+++++.|.+    ++++++.+.+++.+++... ..+|++..+..++|+.+++++.+.++.++++++|++|+|+++++.
T Consensus        31 ~~~i~l~~g~~----~~~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~  105 (391)
T 3h14_A           31 RRIIHMEVGQP----GTGAPRGAVEALAKSLETD-ALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFL  105 (391)
T ss_dssp             CCCEECCCSSC----SSCSCHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHH
T ss_pred             CCeEEccCCCC----CCCCCHHHHHHHHHHHhcC-CCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHH
Confidence            35677878776    7888999999999998764 347888778999999999999988887888999999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      .++.+++++||+|+++.|+|.++...++  ..|.++..+++++++++.+|+++++++   ++++|++++|+||||.++|.
T Consensus       106 ~~~~~l~~~gd~vl~~~p~~~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~---~~~~v~i~~p~nptG~~~~~  180 (391)
T 3h14_A          106 LAFTALFDSGDRVGIGAPGYPSYRQILR--ALGLVPVDLPTAPENRLQPVPADFAGL---DLAGLMVASPANPTGTMLDH  180 (391)
T ss_dssp             HHHHHHCCTTCEEEEEESCCHHHHHHHH--HTTCEEEEEECCGGGTTSCCHHHHTTS---CCSEEEEESSCTTTCCCCCH
T ss_pred             HHHHHhcCCCCEEEEcCCCCccHHHHHH--HcCCEEEEeecCcccCCCCCHHHHHhc---CCeEEEECCCCCCCCccCCH
Confidence            9999999999999999999999999999  999999999987666778899999887   78999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      +++++|+++|+++|+++|+|++|+++.+++... ++..+  .+++++++|+||.++++|+|+||+++++        +++
T Consensus       181 ~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~-~~~~~--~~~~i~~~s~sK~~g~~G~r~G~~~~~~--------~~~  249 (391)
T 3h14_A          181 AAMGALIEAAQAQGASFISDEIYHGIEYEAKAV-TALEL--TDECYVINSFSKYFSMTGWRVGWMVVPE--------DQV  249 (391)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCC-CGGGT--CSSSEEEEESSSTTCCTTSCCEEEECCG--------GGH
T ss_pred             HHHHHHHHHHHHcCCEEEEECcchhcccCCCCc-Chhhc--CCCEEEEEechhccCCccceeEEEEeCH--------HHH
Confidence            999999999999999999999999988876532 22222  3567999999999999999999999976        677


Q ss_pred             HHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccccc
Q 038416          248 DSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE  326 (387)
Q Consensus       248 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~  326 (387)
                      +.+..... ...+++++.+.++.+++.  .+.++++..++++++++.+.+.|++++ +..+..|.+++++|+.++...  
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~--  324 (391)
T 3h14_A          250 RVVERIAQNMFICAPHASQVAALAALD--CDAELQANLDVYKANRKLMLERLPKAG-FTRIAPPDGAFYVYADVSDLT--  324 (391)
T ss_dssp             HHHHHHHHHTTCCCCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHT-CCCBCCCCBTTEEEEECTTTC--
T ss_pred             HHHHHHHhhhccCCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHHcC-CCcccCCCeeEEEEEecCccC--
Confidence            77776643 456788889888888887  467889999999999999999999884 443447788899998886421  


Q ss_pred             CCCcHHHHHHHHHHhcCeEEEcCCccCC---CCeEEEEeeCChHhHHHHHHHHHHHHHHhhh
Q 038416          327 DIGDDLEFCLKLAKEESVIILPGRTVGM---KNWLRIAFAAEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       327 ~~~~~~~~~~~ll~~~gi~v~~g~~~~~---~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                        .+..++...+++++||.+.||..|+.   .+++||+++.+++++++++++|++++++..+
T Consensus       325 --~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~~~~~~~  384 (391)
T 3h14_A          325 --DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYARATADIEEGLDRLEAFMQARGE  384 (391)
T ss_dssp             --SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCSCHHHHHHHHHHHHHHHHHC--
T ss_pred             --CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhcc
Confidence              25667888887778999999998876   5799999988999999999999999988765

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=100.00  E-value=1e-46  Score=350.94  Aligned_cols=354  Identities=22%  Similarity=0.409  Sum_probs=300.1

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      .+++++.|.+    +++.++.+.+++.+.+... ...|++..+..++|+.+++++.+.++..+++++|++|+|+++++..
T Consensus        31 ~~i~l~~~~~----~~~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~  105 (388)
T 1j32_A           31 DVCSFSAGEP----DFNTPKHIVEAAKAALEQG-KTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFN  105 (388)
T ss_dssp             CCEECCCSSC----SSCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHH
T ss_pred             CEEECCCCCC----CCCCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHH
Confidence            3567777766    6778899999999988654 3478887789999999999998877777788999999999999999


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      ++++++++||+|+++.|+|+++...++  ..|.+++.+++++++++.+|+++|++++++++++|++++|+||||.++|.+
T Consensus       106 ~~~~~~~~gd~vl~~~~~~~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~  183 (388)
T 1j32_A          106 LMLAMIEPGDEVIIPAPFWVSYPEMVK--LAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPD  183 (388)
T ss_dssp             HHHHHCCTTCEEEEESSCCTHHHHHHH--HTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHH
T ss_pred             HHHHhcCCCCEEEEcCCCChhHHHHHH--HcCCEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHH
Confidence            999999999999999999999999999  899999999886545678899999999988899999999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC--CccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS--IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      ++++|+++|+++|+++|+|++|+.+.+++.+..++..+..  .++++++.|+||.++++|+|+||+++++        ++
T Consensus       184 ~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~--------~~  255 (388)
T 1j32_A          184 EVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPV--------PL  255 (388)
T ss_dssp             HHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCH--------HH
T ss_pred             HHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEEEEeCH--------HH
Confidence            9999999999999999999999998887765555555543  3568999999999999999999999875        67


Q ss_pred             HHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccc
Q 038416          247 VDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML  325 (387)
Q Consensus       247 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~  325 (387)
                      ++.+..... .+.+++++.+.++..+++. .+.++++..++++++++.+.+.|+++|++.+. .|.+++++|+.++... 
T Consensus       256 ~~~l~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~~~~~~~~~~~~~-  332 (388)
T 1j32_A          256 VKAATKIQGHSTSNVCTFAQYGAIAAYEN-SQDCVQEMLAAFAERRRYMLDALNAMPGLECP-KPDGAFYMFPSIAKTG-  332 (388)
T ss_dssp             HHHHHHHHHTTTCSCCHHHHHHHHHHHHS-CSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCC-CCCBTTEECCBCGGGT-
T ss_pred             HHHHHHHHhhcccCCCHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHhhCCCCccc-CCCeeEEEEEecCCCC-
Confidence            777776543 3466778888888888864 34678888999999999999999998888844 6778888887775311 


Q ss_pred             cCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHHh
Q 038416          326 EDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       326 ~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~  383 (387)
                         .+..++...+++++||.+.||..|+.++++|++++.+++++++++++|+++++++
T Consensus       333 ---~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~i~~~~~~l~~~l~~~  387 (388)
T 1j32_A          333 ---RSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFLHGI  387 (388)
T ss_dssp             ---CCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred             ---CCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence               1456777777666799999998887788999999989999999999999998765

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-47  Score=358.43  Aligned_cols=354  Identities=23%  Similarity=0.364  Sum_probs=297.3

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      ..+++++.|.|    ++++|+.+.+++.+++......+|++..|..+||+++++++.+.++.++++++|++|+|+++++.
T Consensus        57 ~~~i~l~~g~~----~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~  132 (447)
T 3b46_A           57 RELINLGQGFF----SYSPPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGIL  132 (447)
T ss_dssp             SCCEECCCCSC----SSCCCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHH
T ss_pred             CCeEEccCCCC----CCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHH
Confidence            35678888876    77889999999999987523457888789999999999999888887778889999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCC----------CccCChhhHHHhhccCceEEEEeCC
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEK----------RWEVDLDGVEALADENTVAIVIINP  157 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~v~l~~p  157 (387)
                      .++.+++++||+|+++.|+|+++...++  ..|.+++.+++.+++          ++.+|+++|++++++++++|++++|
T Consensus       133 ~~~~~l~~~gd~Vlv~~p~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p  210 (447)
T 3b46_A          133 SCLMGLLNAGDEVIVFEPFFDQYIPNIE--LCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVIINTP  210 (447)
T ss_dssp             HHHHHHCCTTCEEEEEESCCTTHHHHHH--HTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTTEEEEEEESS
T ss_pred             HHHHHHcCCCCEEEEeCCCchhHHHHHH--HcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhccCCeEEEEeCC
Confidence            9999999999999999999999999999  999999999886542          5789999999999888999999999


Q ss_pred             CCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcccccc--CCCccEEEEecCcccccccccceEEEEe-
Q 038416          158 GNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF--GSIVPVITLGSISKRWIVPGWRLGWLVT-  234 (387)
Q Consensus       158 ~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~s~sK~~~~~g~r~G~i~~-  234 (387)
                      +||||.++|.+++++|+++|++||+++|+||+|+++.+++ ...++..+  +..++++++.|+||.|+++|+|+||+++ 
T Consensus       211 ~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~riG~~~~~  289 (447)
T 3b46_A          211 HNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTD-SFTRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSL  289 (447)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCGGGSCHHHHTTEEEEEEHHHHTTCTTSCCEEEECS
T ss_pred             CCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCC-CCcCHHHcCCCCCCcEEEEecCchhcCCcchhhEEEEeC
Confidence            9999999999999999999999999999999999988876 33344444  1235789999999999999999999999 


Q ss_pred             eCCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhcc-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCc
Q 038416          235 SDPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETN-EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQG  312 (387)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  312 (387)
                      ++        ++++.+.... ...++++++.|.++..+|+... +.++++..++++++++.+.+.|+++ ++.+ ..|.+
T Consensus       290 ~~--------~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~  359 (447)
T 3b46_A          290 NA--------ELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL-GLPY-TAPEG  359 (447)
T ss_dssp             CH--------HHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH-TCCE-ECCSB
T ss_pred             CH--------HHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCee-cCCCe
Confidence            65        6788777653 2456778889998888887542 4668888999999999999999988 7774 37888


Q ss_pred             eEEEEEecCcccccC----------CCcHHHHHHHHHHhcCeEEEcCCccCC-------CCeEEEEeeCChHhHHHHHHH
Q 038416          313 AMFVMVKLNVSMLED----------IGDDLEFCLKLAKEESVIILPGRTVGM-------KNWLRIAFAAEPATLEDGLER  375 (387)
Q Consensus       313 g~~~~~~~~~~~~~~----------~~~~~~~~~~ll~~~gi~v~~g~~~~~-------~~~~Ri~~~~~~e~~~~~~~~  375 (387)
                      |+|+|++++....+.          ..+..++...+++++||.+.||..|+.       .+++||+++.+++++++++++
T Consensus       360 g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~~~e~l~~~~~~  439 (447)
T 3b46_A          360 TYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCKDDAYLENAVER  439 (447)
T ss_dssp             SSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCSCHHHHHHHHHH
T ss_pred             eEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeCCHHHHHHHHHH
Confidence            999999886421111          124557777787778999999988753       579999999899999999999


Q ss_pred             HHH
Q 038416          376 IKA  378 (387)
Q Consensus       376 l~~  378 (387)
                      |++
T Consensus       440 l~~  442 (447)
T 3b46_A          440 LKL  442 (447)
T ss_dssp             GGG
T ss_pred             HHH
Confidence            876

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=100.00  E-value=5.7e-47  Score=356.64  Aligned_cols=358  Identities=21%  Similarity=0.377  Sum_probs=304.7

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCC-CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCC-CCEEEcCChHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAH-YNCYSPTLGVPSARRGIADYLNRDLPYKLSP-EDVYLTLGCSQA   85 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~-~~i~~~~g~~~a   85 (387)
                      ...++++.|.|    ++++++.+.+++.+++.... ..+|++..+..++|+.+++++.+.++..+++ ++|++|+|++++
T Consensus        28 ~~~i~l~~g~~----~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a  103 (422)
T 3fvs_A           28 HDVVNLGQGFP----DFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGA  103 (422)
T ss_dssp             SCCEECCCSSC----SSCCCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHH
T ss_pred             CCceEeCCCCC----CCCCCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHH
Confidence            35677778776    78999999999999988653 3578887889999999999999888877778 799999999999


Q ss_pred             HHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCC----------CCCccCChhhHHHhhccCceEEEEe
Q 038416           86 IEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLP----------EKRWEVDLDGVEALADENTVAIVII  155 (387)
Q Consensus        86 ~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~v~l~  155 (387)
                      +..++.+++++||+|+++.|+|+++...+.  ..|.+++.+++++          ..++.+|++++++++++++++|+++
T Consensus       104 ~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~--~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~~~~v~~~  181 (422)
T 3fvs_A          104 LFTAFQALVDEGDEVIIIEPFFDCYEPMTM--MAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLN  181 (422)
T ss_dssp             HHHHHHHHCCTTCEEEEEESCCTTHHHHHH--HTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTTEEEEEEE
T ss_pred             HHHHHHHHcCCCCEEEEcCCCchhhHHHHH--HcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCCCceEEEEC
Confidence            999999999999999999999999999999  9999999998865          2356789999999999899999999


Q ss_pred             CCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEe
Q 038416          156 NPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVT  234 (387)
Q Consensus       156 ~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~  234 (387)
                      +|+||||.++|.+++++|+++|+++|+++|+|++|+.+.+++....++..+.. .++++++.|+||.|+++|+|+||+++
T Consensus       182 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~  261 (422)
T 3fvs_A          182 TPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLG  261 (422)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEEC
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccceEEEEEe
Confidence            99999999999999999999999999999999999999988776666666543 46789999999999999999999998


Q ss_pred             eCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhh------ccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 038416          235 SDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDE------TNEAFFAKIIGLLKETADICYERIKEIPCITCP  307 (387)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  307 (387)
                      ++        ++++.+..... ..++++++.+.++..+++.      ..+.++++..++++++++.+.+.|+++ ++.+ 
T Consensus       262 ~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-  331 (422)
T 3fvs_A          262 PD--------HIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKP-  331 (422)
T ss_dssp             CH--------HHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT-TCEE-
T ss_pred             CH--------HHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHc-CCee-
Confidence            76        67887776543 4567788999998888874      124678889999999999999999998 7773 


Q ss_pred             CCCCceEEEEEecCcccccCCCc---------HHHHHHHHHHhcCeEEEcCCccCC-------CCeEEEEeeCChHhHHH
Q 038416          308 VKPQGAMFVMVKLNVSMLEDIGD---------DLEFCLKLAKEESVIILPGRTVGM-------KNWLRIAFAAEPATLED  371 (387)
Q Consensus       308 ~~~~~g~~~~~~~~~~~~~~~~~---------~~~~~~~ll~~~gi~v~~g~~~~~-------~~~~Ri~~~~~~e~~~~  371 (387)
                      ..|.+++|+|+.++..... ..+         ..++...+++++||.+.||..|+.       .+++||+++.+++++++
T Consensus       332 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i~~  410 (422)
T 3fvs_A          332 IIPQGSYFLITDISDFKRK-MPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQA  410 (422)
T ss_dssp             EBCSBSSEEEEECHHHHHH-CCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCCHHHHHH
T ss_pred             cCCCeeeEEEEechhhccc-ccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecCCHHHHHH
Confidence            4789999999987642110 000         457788888888999999998853       68999999889999999


Q ss_pred             HHHHHHHHHHH
Q 038416          372 GLERIKAFCQR  382 (387)
Q Consensus       372 ~~~~l~~~~~~  382 (387)
                      ++++|++++++
T Consensus       411 ~l~~l~~~l~~  421 (422)
T 3fvs_A          411 MDEKLRKWKVE  421 (422)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhh
Confidence            99999998865

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=100.00  E-value=5.1e-46  Score=346.60  Aligned_cols=354  Identities=17%  Similarity=0.252  Sum_probs=302.8

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      .+++.+.|++    ++++++.+.+++.+++... ..+|++.  ..++++.+++++.+.++.++++++|++|+|+++++..
T Consensus        28 ~~i~~~~~~~----~~~~~~~v~~a~~~~~~~~-~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~  100 (391)
T 3dzz_A           28 KELPMWIAEM----DFKIAPEIMASMEEKLKVA-AFGYESV--PAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISA  100 (391)
T ss_dssp             TCEECCSSCC----SSCCCHHHHHHHHHHHTTC-CCCCBCC--CHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHH
T ss_pred             CceeccccCC----CCCCCHHHHHHHHHHHhcC-cCCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHH
Confidence            5667777765    8899999999999998764 3466654  5899999999999888877888999999999999999


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccC-CCCCccCChhhHHHhhc-cCceEEEEeCCCCCccccCC
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLL-PEKRWEVDLDGVEALAD-ENTVAIVIINPGNPCGNVFS  166 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~~-~~~~~v~l~~p~nptG~~~~  166 (387)
                      ++.+++++||+|+++.|+|+++...++  ..|.+++.++++ ...++.+|+++|+++++ +++++|++++|+||||.++|
T Consensus       101 ~~~~l~~~gd~vl~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~  178 (391)
T 3dzz_A          101 MVRQFTSPGDQILVQEPVYNMFYSVIE--GNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWS  178 (391)
T ss_dssp             HHHHHSCTTCEEEECSSCCHHHHHHHH--HTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCC
T ss_pred             HHHHhCCCCCeEEECCCCcHHHHHHHH--HcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccC
Confidence            999999999999999999999999999  999999999885 34456689999999997 78999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC--CccEEEEecCcccccccccceEEEEeeCCCCcccch
Q 038416          167 YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS--IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNS  244 (387)
Q Consensus       167 ~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~  244 (387)
                      .+++++|+++|+++|+++|+|++|+++.+.+....++..+..  .++++++.|+||.++++|+|+||+++++       +
T Consensus       179 ~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~-------~  251 (391)
T 3dzz_A          179 EEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPN-------P  251 (391)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCS-------H
T ss_pred             HHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECC-------H
Confidence            999999999999999999999999999888766666666543  4578999999999999999999999863       2


Q ss_pred             hHHHHHHhhhh--ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCCceEEEEEecC
Q 038416          245 GFVDSIKGCLN--AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE-IPCITCPVKPQGAMFVMVKLN  321 (387)
Q Consensus       245 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~g~~~~~~~~  321 (387)
                      ++.+.+.....  ..++++++.+.++..+++. .+.++++..++++++++.+.+.|++ +|++. +..+.+++++|+.++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~  329 (391)
T 3dzz_A          252 DLRARAEESFFLAGIGEPNLLAIPAAIAAYEE-GHDWLRELKQVLRDNFAYAREFLAKEVPEVK-VLDSNASYLAWVDIS  329 (391)
T ss_dssp             HHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSE-ECCCCBSSEEEEECG
T ss_pred             HHHHHHHHHHHhhccCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcE-EeccCceEEEEEehh
Confidence            67777776532  3457888888888888875 4677889999999999999999998 88888 447888988998886


Q ss_pred             cccccCCCcHHHHHHHHHHhcCeEEEcCCccCCC--CeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          322 VSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMK--NWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       322 ~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~--~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      ...    .+..++...+++++||.+.||..|+..  +++||+++.+++++++++++|++++++++
T Consensus       330 ~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~~~~  390 (391)
T 3dzz_A          330 ALG----MNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLACPKELVIDGMQRLKQGVLNLN  390 (391)
T ss_dssp             GGC----SCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCSCHHHHHHHHHHHHHHHHTCC
T ss_pred             hcC----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence            421    146677777766789999999988764  89999999899999999999999998764

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=100.00  E-value=1.6e-46  Score=351.90  Aligned_cols=356  Identities=19%  Similarity=0.235  Sum_probs=301.9

Q ss_pred             ccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCC-CCEEEcCChHHHHHH
Q 038416           10 RHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSP-EDVYLTLGCSQAIEI   88 (387)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~-~~i~~~~g~~~a~~~   88 (387)
                      +++++.|++.   .+++++.+++++.+++.......|++..+..++++.+++++.+.++..+++ ++|++|+|+++++..
T Consensus        41 ~id~~~g~~~---~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~  117 (407)
T 3nra_A           41 PVDFSHGDVD---AHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFL  117 (407)
T ss_dssp             CEETTSCCTT---TSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHH
T ss_pred             eeeecCcCCC---CCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHH
Confidence            5677777652   378899999999999875433468777889999999999999888876666 799999999999999


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCC----CCCccCChhhHHHhhccCceEEEEeCCCCCcccc
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLP----EKRWEVDLDGVEALADENTVAIVIINPGNPCGNV  164 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~  164 (387)
                      ++.+++++||+|+++.|+|.++...++  ..|.+++.++++.    ++++.+|+++++++++++++++++++|+||||.+
T Consensus       118 ~~~~l~~~gd~vl~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~  195 (407)
T 3nra_A          118 AVAATVARGDKVAIVQPDYFANRKLVE--FFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVV  195 (407)
T ss_dssp             HHHTTCCTTCEEEEEESCCTHHHHHHH--HTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEESSCTTTCCC
T ss_pred             HHHHhCCCCCEEEEcCCcccchHHHHH--HcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcCCCCCCCcc
Confidence            999999999999999999999999999  9999999998743    3567899999999998889999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccC--CCccEEEEecCcccccccccceEEEEeeCCCCccc
Q 038416          165 FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFG--SIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQ  242 (387)
Q Consensus       165 ~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~  242 (387)
                      +|.+++++|+++|++||+++|+|++|+.+.+++....++..+.  ..++++++.|+||.++++|+|+||+++++      
T Consensus       196 ~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~------  269 (407)
T 3nra_A          196 YSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSR------  269 (407)
T ss_dssp             CCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEECH------
T ss_pred             cCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcCH------
Confidence            9999999999999999999999999999988877666666653  35678999999999999999999999865      


Q ss_pred             chhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecC
Q 038416          243 NSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLN  321 (387)
Q Consensus       243 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~  321 (387)
                        ++++.+..... ...+++++.+.++..+++. .+.++++..++++++++.+.+.|++++++.. ..+.+++++|+.++
T Consensus       270 --~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~  345 (407)
T 3nra_A          270 --AIIARMEKLQAIVSLRAAGYSQAVLRGWFDE-APGWMEDRIARHQAIRDELLHVLRGCEGVFA-RTPQAGSYLFPRLP  345 (407)
T ss_dssp             --HHHHHHHHHHHHHTSSSCHHHHGGGGGTTCC-CTTHHHHHHHHHHHHHHHHHHHHHTSTTCBC-CCCSBSSEECCBCC
T ss_pred             --HHHHHHHHHHhhhccCCChHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHhcCCCcee-ccCCeeEEEEEeCC
Confidence              78888776643 4556677888888877764 3456788888999999999999999988884 47888899998886


Q ss_pred             cccccCCCcHHHHHHHHHHhcCeEEEcCCccC--CCCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          322 VSMLEDIGDDLEFCLKLAKEESVIILPGRTVG--MKNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       322 ~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~--~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      ...    .+..++...+++++||.+.||..|+  ..+++||+++.+++++++++++|++++++++
T Consensus       346 ~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~~~~l~~~~~~~~  406 (407)
T 3nra_A          346 KLA----VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVERYR  406 (407)
T ss_dssp             CBS----SCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCSCHHHHHHHHHHHHHHHHHHB
T ss_pred             CCC----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHhh
Confidence            421    2466777777777899999998886  3689999998899999999999999998875

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=100.00  E-value=7.9e-46  Score=345.12  Aligned_cols=354  Identities=23%  Similarity=0.427  Sum_probs=298.0

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCC-EEEcCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPED-VYLTLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~-i~~~~g~~~a~~   87 (387)
                      .+++++.|.+    +++.++.+.+++.+.+... ..+|++..+..++|+.+++++.+.++..+++++ |++|+|+++++.
T Consensus        27 ~~i~l~~~~~----~~~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~  101 (389)
T 1gd9_A           27 DVISLGIGEP----DFDTPQHIKEYAKEALDKG-LTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFL  101 (389)
T ss_dssp             SCEECCCCSC----SSCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHH
T ss_pred             CeEecCCCCC----CCCCCHHHHHHHHHHHhCC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHH
Confidence            4667777765    6678999999999998764 347887778999999999999887776677889 999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      .++.+++++||+|+++.|+|+++...++  ..|.+++.+++++++++.+|++++++++++++++|++++|+||||.++|.
T Consensus       102 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~  179 (389)
T 1gd9_A          102 MGLSAFLKDGEEVLIPTPAFVSYAPAVI--LAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTK  179 (389)
T ss_dssp             HHHTTTCCTTCEEEEEESCCTTHHHHHH--HHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCH
T ss_pred             HHHHHhCCCCCEEEEcCCCchhHHHHHH--HCCCEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcCCCH
Confidence            9999999999999999999999999999  89999999998654567789999999998889999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      +++++|+++|+++|+++|+|++|+.+.+.+.+..++..+.. .++++++.|+||.++++|+|+||+++++        ++
T Consensus       180 ~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~--------~~  251 (389)
T 1gd9_A          180 KDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPS--------WI  251 (389)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCH--------HH
T ss_pred             HHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEECH--------HH
Confidence            99999999999999999999999998887654445555432 4578999999999989999999999975        68


Q ss_pred             HHHHHhhhh-ccCCcchHHHHHHHHHhhhcc-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccc
Q 038416          247 VDSIKGCLN-AASHPVTFIQAAVPRIVDETN-EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSM  324 (387)
Q Consensus       247 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~  324 (387)
                      ++.+..... ..++++++.+.++..+|+... +.++++..++++++++.+.+.|+++ ++.+. .|.+++++|+.++...
T Consensus       252 ~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~  329 (389)
T 1gd9_A          252 IERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTV-KPKGAFYIFPRIRDTG  329 (389)
T ss_dssp             HHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCC-CCCBTTEECCBCGGGT
T ss_pred             HHHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc-CCeec-CCCeeeEEEEeccCCC
Confidence            888876543 456778889999888887532 2378888999999999999999988 78744 6778888888875311


Q ss_pred             ccCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHHHh
Q 038416          325 LEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       325 ~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~  383 (387)
                          .+..++...+++++||.+.||..|+.  ++++||+++.+++++++++++|++++++.
T Consensus       330 ----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~~~~~  386 (389)
T 1gd9_A          330 ----LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLKER  386 (389)
T ss_dssp             ----CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHHT
T ss_pred             ----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence                14567777776578999999988764  67999999889999999999999998764

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=100.00  E-value=3.6e-46  Score=350.02  Aligned_cols=358  Identities=18%  Similarity=0.298  Sum_probs=293.5

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCC-CCEEEcCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSP-EDVYLTLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~-~~i~~~~g~~~a~~   87 (387)
                      .+++++.|.+    +++.++.+.+++.+++.......|++..+..++|+.+++++.+.++.++++ ++|++|+|+++++.
T Consensus        38 ~~idl~~g~~----~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~  113 (412)
T 2x5d_A           38 DIIDLSMGNP----DGPTPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLA  113 (412)
T ss_dssp             CCEECSSCCC----CSCCCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHH
T ss_pred             CEEecCCCCC----CCCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHH
Confidence            4567777766    677899999999998865434578777789999999999998777766777 79999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      .++.+++++||+|+++.|+|+++...++  ..|.+++.+++++++++.+|++++++++++++++|++++|+||||.++|.
T Consensus       114 ~~~~~~~~~gd~Vl~~~p~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l~~p~nptG~~~~~  191 (412)
T 2x5d_A          114 HLMLATLDHGDTILVPNPSYPIHIYGAV--IAGAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILGFPSNPTAQCVEL  191 (412)
T ss_dssp             HHHHHHCCTTCEEEEEESCCHHHHHHHH--HHTCEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEEESSCTTTCCCCCH
T ss_pred             HHHHHhCCCCCEEEEcCCCchhHHHHHH--HcCCEEEEeecCCccCCCCCHHHHHHhcccCceEEEECCCCCCCCCcCCH
Confidence            9999999999999999999999999999  89999999998755466678999999998889999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      +++++|+++|+++|+++|+|++|+.+.+.+....++..+.. .++++++.|+||.++++|+|+||+++++        ++
T Consensus       192 ~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~--------~~  263 (412)
T 2x5d_A          192 DFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGNP--------EL  263 (412)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEECH--------HH
T ss_pred             HHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEEEEcCH--------HH
Confidence            99999999999999999999999998887655555555532 4578999999999989999999999965        68


Q ss_pred             HHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccc
Q 038416          247 VDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML  325 (387)
Q Consensus       247 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~  325 (387)
                      ++.+..... .+++++++.+.++..+|+.. +.++++..++++++++.+.+.|+++ ++.+ ..+.+|+|+|++++... 
T Consensus       264 ~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~g~~~~~~~~~~~-  339 (412)
T 2x5d_A          264 VSALARIKSYHDYGTFTPLQVAAIAALEGD-QQCVRDIARQYQQRRDVLVKGLREA-GWMV-ENPKASMYVWAKIPEPY-  339 (412)
T ss_dssp             HHHHHHHHHHHCCCCCHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHHH-TCCC-CCCSBSSEEEEECCTTT-
T ss_pred             HHHHHHHHhhhccCCCHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHC-CCEe-cCCCeeeEEEEEcCCcc-
Confidence            887776543 35678889999988888753 4678888999999999999999988 7774 36778889999886311 


Q ss_pred             cCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHHHhhh
Q 038416          326 EDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       326 ~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      . ..+..++...+++++||.+.||..|..  .+++||+++.+++++++++++|+++++++..
T Consensus       340 ~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~l~~~~~  400 (412)
T 2x5d_A          340 A-HLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIENRDRLRQAVRGIKAMFRADGL  400 (412)
T ss_dssp             G-GGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             C-CCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHhcCC
Confidence            0 013567777777778999999988853  5799999988999999999999999987653

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=100.00  E-value=4.4e-46  Score=347.87  Aligned_cols=353  Identities=21%  Similarity=0.396  Sum_probs=290.8

Q ss_pred             ccccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCC---CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCCh
Q 038416            6 GQETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAH---YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGC   82 (387)
Q Consensus         6 g~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~---~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~   82 (387)
                      |.+.+++++.|+|    ++++++.+.+++.+++....   ..+|++..+..++|+.+++++.+.++.++++++|++|+|+
T Consensus        33 ~~~~~i~l~~~~~----~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~  108 (398)
T 3ele_A           33 GKENVYDFSIGNP----SIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGA  108 (398)
T ss_dssp             CGGGCEECCSCCC----CSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSH
T ss_pred             CCCCeEEeecCCC----CCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCH
Confidence            4456788888766    77889999999999987632   3578887899999999999999888888889999999999


Q ss_pred             HHHHHHHHHhhcCCC-CeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCc
Q 038416           83 SQAIEISLSVLARPG-ANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPC  161 (387)
Q Consensus        83 ~~a~~~~~~~l~~~g-~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~npt  161 (387)
                      ++++..++.+++++| |+|+++.|+|+++...++  ..|.+++.+++++ +++.+|+++|++++++++++|++++|+|||
T Consensus       109 ~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~--~~g~~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~v~~~~p~npt  185 (398)
T 3ele_A          109 AASLSICFRALTSDAYDEFITIAPYFPEYKVFVN--AAGARLVEVPADT-EHFQIDFDALEERINAHTRGVIINSPNNPS  185 (398)
T ss_dssp             HHHHHHHHHHHCCSTTCEEEEESSCCTHHHHHHH--HTTCEEEEECCCT-TTSSCCHHHHHHTCCTTEEEEEECSSCTTT
T ss_pred             HHHHHHHHHHHcCCCCCEEEEeCCCchhhHHHHH--HcCCEEEEEecCC-cCCcCCHHHHHHHhCcCCCEEEEcCCCCCC
Confidence            999999999999999 999999999999999999  9999999999864 367899999999999899999999999999


Q ss_pred             cccCCHHHHHHHHHHHHh------cCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEee
Q 038416          162 GNVFSYQHLQKIARTARN------LGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTS  235 (387)
Q Consensus       162 G~~~~~~~~~~l~~~~~~------~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~  235 (387)
                      |.++|.+++++|+++|++      +|+++|+||+|+.+.+++........  ..+++++++|+||.++++|+|+||++++
T Consensus       186 G~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~--~~~~~i~~~s~sK~~~~~G~r~G~~~~~  263 (398)
T 3ele_A          186 GTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTK--YYDNTLVCYSYSKSLSLPGERIGYVLVP  263 (398)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGG--TCSSEEEEEESTTTSSCTTTCCEEEECC
T ss_pred             CCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHh--hcCCeEEEEehhhcCCCccceeEEEEEc
Confidence            999999999999999999      99999999999998887654333322  2357899999999999999999999997


Q ss_pred             CCCCcccchhHHHHHHhhhh--ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCce
Q 038416          236 DPNGILQNSGFVDSIKGCLN--AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGA  313 (387)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g  313 (387)
                      +.  ......+.+.+.....  ...+++.+.+.++..+++...      ..+.++++++.+.+.|+++ ++. +..|.++
T Consensus       264 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~~  333 (398)
T 3ele_A          264 DE--VYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG------DINAYKENRDLLYEGLTRI-GYH-CFKPDGA  333 (398)
T ss_dssp             TT--STTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC------CHHHHHHHHHHHHHHHHHH-TCC-EECCSBS
T ss_pred             ch--hhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHc-CCe-ecCCCee
Confidence            62  1101113333433322  245667788888877776532      3566777888888888887 677 4478889


Q ss_pred             EEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          314 MFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      +++|++++..      +..++...+ .++||.+.||..|+.++++||+++.+++++++++++|++++++++
T Consensus       334 ~~~~~~~~~~------~~~~~~~~l-~~~gi~v~~g~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~~~~  397 (398)
T 3ele_A          334 FYMFVKALED------DSNAFCEKA-KEEDVLIVAADGFGCPGWVRISYCVDREMIKHSMPAFEKIYKKYN  397 (398)
T ss_dssp             SEEEEECSSS------CHHHHHHHH-HTTTEECEESGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEcCCC------CHHHHHHHH-HHCCEEEeCccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence            8899988641      455666654 677999999999988899999999899999999999999998875

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=100.00  E-value=6.1e-46  Score=346.69  Aligned_cols=345  Identities=22%  Similarity=0.341  Sum_probs=292.8

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCC-CCCC-CEEEcCChHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYK-LSPE-DVYLTLGCSQA   85 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~-~~~~-~i~~~~g~~~a   85 (387)
                      +.+++++.|.+    +++.++.+.+++.+.+..  ..+|++..+..++|+.+++++.+.++.. ++++ +|++|+|++++
T Consensus        30 ~~~i~l~~~~~----~~~~~~~v~~a~~~~~~~--~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~a  103 (396)
T 3jtx_A           30 MEAVPLHIGEP----KHPTPKVITDALTASLHE--LEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREA  103 (396)
T ss_dssp             CCCEECSCCSC----CSCCCHHHHHHHHHTGGG--GGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHH
T ss_pred             CCeEEeCCcCC----CCCCCHHHHHHHHHHhhh--ccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHH
Confidence            45677778775    788999999999998863  4578888889999999999999888866 7788 99999999999


Q ss_pred             HHHHHHhhcCCC-----CeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCC
Q 038416           86 IEISLSVLARPG-----ANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNP  160 (387)
Q Consensus        86 ~~~~~~~l~~~g-----~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~np  160 (387)
                      +..++.+++++|     |+|+++.|+|+++...+.  ..|.+++.+++ .++++.+|+++++++++++++++++++|+||
T Consensus       104 l~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~--~~g~~~~~v~~-~~~g~~~d~~~l~~~~~~~~~~v~l~~p~np  180 (396)
T 3jtx_A          104 LFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATL--LGGGEIHFANC-PAPSFNPDWRSISEEVWKRTKLVFVCSPNNP  180 (396)
T ss_dssp             HHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHH--HTTCEEEEEEC-CTTTCCCCGGGSCHHHHHTEEEEEEESSCTT
T ss_pred             HHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHH--HcCCEEEEeec-CCCCCccCHHHHHHhhccCcEEEEEECCCCC
Confidence            999999999996     799999999999999999  99999999998 4567788999999999889999999999999


Q ss_pred             ccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccc---cC-CCccEEEEecCcccccccccceEEEEee
Q 038416          161 CGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGV---FG-SIVPVITLGSISKRWIVPGWRLGWLVTS  235 (387)
Q Consensus       161 tG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~---~~-~~~~~~~i~s~sK~~~~~g~r~G~i~~~  235 (387)
                      ||.++|.+++++|+++|+++|+++|+||+|+++.+++..+.+ +..   +. ..++++++.|+||.|+++|+|+||++++
T Consensus       181 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~  260 (396)
T 3jtx_A          181 SGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGD  260 (396)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEEC
T ss_pred             CCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccceEEEEeC
Confidence            999999999999999999999999999999998887632222 111   11 2467899999999999999999999986


Q ss_pred             CCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceE
Q 038416          236 DPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAM  314 (387)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~  314 (387)
                      +        ++++.+..... .+++++++.+.++..+++.  +.++.+..++++++++.+.+.|+++  +. +..|.+++
T Consensus       261 ~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~--~~-~~~~~~~~  327 (396)
T 3jtx_A          261 A--------ELLKNFLLYRTYHGSAMSIPVQRASIAAWDD--EQHVIDNRRLYQEKFERVIPILQQV--FD-VKLPDASF  327 (396)
T ss_dssp             H--------HHHHHHHHHHHHHTCCCCHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHTTT--SC-CCCCSSSS
T ss_pred             H--------HHHHHHHHHHhhcccCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhc--CC-ccCCCeeE
Confidence            5        78888876643 4567889999999888875  4678888999999999999999875  33 33678899


Q ss_pred             EEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC--------CCeEEEEeeCChHhHHHHHHHHHHHH
Q 038416          315 FVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--------KNWLRIAFAAEPATLEDGLERIKAFC  380 (387)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--------~~~~Ri~~~~~~e~~~~~~~~l~~~~  380 (387)
                      ++|+.++.      .+..++...+++++||.+.||..|+.        .+++||+++.+++++++++++|++++
T Consensus       328 ~~~~~~~~------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l  395 (396)
T 3jtx_A          328 YIWLKVPD------GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAEDIVSLY  395 (396)
T ss_dssp             EEEEECTT------SCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred             EEEEECCC------CCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence            99998874      14667888887888999999998864        47999999889999999999998764

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=100.00  E-value=2.3e-46  Score=350.25  Aligned_cols=351  Identities=18%  Similarity=0.279  Sum_probs=294.6

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCC-CCEEEcCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSP-EDVYLTLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~-~~i~~~~g~~~a~~   87 (387)
                      .+++++.|.+    +++.++.+.+++.+++.......|++..+..++|+.+++++.+.++.++++ ++|++|+|+++++.
T Consensus        48 ~~idl~~g~~----~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~  123 (404)
T 2o1b_A           48 PLINMAVGIP----DGPTPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLV  123 (404)
T ss_dssp             CCEECCCCSC----SSCCCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHH
T ss_pred             CEEecCCcCC----CCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHH
Confidence            3567777766    567889999999998864323468876789999999999998777766676 79999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      .++.+++++||+|+++.|+|+++...++  ..|.+++.+++++ +++.+|+++|++++++++++|++++|+||||.++|.
T Consensus       124 ~~~~~l~~~gd~Vl~~~p~y~~~~~~~~--~~g~~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~  200 (404)
T 2o1b_A          124 AVPTCVINPGDYVLLPDPGYTDYLAGVL--LADGKPVPLNLEP-PHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATK  200 (404)
T ss_dssp             HHHHHHCCTTCEEEEEESCCSSHHHHHH--HTTCEEEEEECCT-TTCCCCGGGSCHHHHHHEEEEEECSSCTTTCCCCCH
T ss_pred             HHHHHhcCCCCEEEEcCCCchhHHHHHH--HCCCEEEEeccCc-ccCcCCHHHHHHhhccCceEEEEcCCCCCCCccCCH
Confidence            9999999999999999999999999999  8999999998865 566789999999887788999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccC-CCccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFG-SIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      +++++|+++|+++|+++|+||+|+.+.+++ ...++..+. ..++++++.|+||.++++|+|+||+++++        ++
T Consensus       201 ~~l~~l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~--------~~  271 (404)
T 2o1b_A          201 EVFDEAIAKFKGTDTKIVHDFAYGAFGFDA-KNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGNK--------DM  271 (404)
T ss_dssp             HHHHHHHHHHTTSSCEEEEECTTTTCBSSS-CCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEECH--------HH
T ss_pred             HHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCCCCCCEEEEEecchhccCchhheEeEecCH--------HH
Confidence            999999999999999999999999988765 233343332 23568999999999988999999999865        68


Q ss_pred             HHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccc
Q 038416          247 VDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML  325 (387)
Q Consensus       247 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~  325 (387)
                      ++.+..... ...+++++.+.++..+++.. +.++++..++++++++.+.+.|+++ ++. +..+.+++++|++++..  
T Consensus       272 ~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~g~~~~~~~~~~--  346 (404)
T 2o1b_A          272 IQALKKYQTHTNAGMFGALQDAAIYALNHY-DDFLEEQSNVFKTRRDRFEAMLAKA-DLP-FVHAKGGIYVWLETPPG--  346 (404)
T ss_dssp             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHT-TCC-EECCCBSSEEEEECCTT--
T ss_pred             HHHHHHHHhhccCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhc-CCe-ecCCCcceEEEEeCCCC--
Confidence            888876543 45678889999998888764 6778889999999999999999988 777 43677888899988631  


Q ss_pred             cCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHHHh
Q 038416          326 EDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       326 ~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~  383 (387)
                         .+..++...+++++||.+.||..|+.  .+++||+++.+++++++++++|+++++++
T Consensus       347 ---~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~~l~~~l~~~  403 (404)
T 2o1b_A          347 ---YDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRLTELAYLY  403 (404)
T ss_dssp             ---CCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCSCTTHHHHHHHHHHGGGGGG
T ss_pred             ---CCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcCCHHHHHHHHHHHHHHHHhh
Confidence               14567778877778999999988864  68999999888899999999999887654

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=100.00  E-value=2.3e-46  Score=347.21  Aligned_cols=349  Identities=18%  Similarity=0.271  Sum_probs=299.0

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      +.+++++.|.+    ++++++.+.+++.+++... ..+|++ .+ .++|+.+++++.+.++..+++++|++|+|+++++.
T Consensus        23 ~~~idl~~~~~----~~~~~~~v~~a~~~~~~~~-~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~   95 (377)
T 3fdb_A           23 QGVLPLWVAES----DFSTCPAVLQAITDAVQRE-AFGYQP-DG-SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLY   95 (377)
T ss_dssp             TTSEECCSSCC----CSCCCHHHHHHHHHHHHTT-CCSSCC-SS-CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHH
T ss_pred             CCeeeecccCC----CCCCCHHHHHHHHHHHHcC-CCCCCC-CC-HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHH
Confidence            35677777755    7889999999999998864 347887 66 89999999999988887788999999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      .++.+++++||+|+++.|+|+++...++  ..|.+++.++++.+    +|+++++++++++++++++++|+||||.++|.
T Consensus        96 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~--~~g~~~~~~~~~~~----~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~  169 (377)
T 3fdb_A           96 IAIDHFTPAQSKVIVPTPAYPPFFHLLS--ATQREGIFIDATGG----INLHDVEKGFQAGARSILLCNPYNPLGMVFAP  169 (377)
T ss_dssp             HHHHHHSCTTCCEEEEESCCTHHHHHHH--HHTCCEEEEECTTS----CCHHHHHHHHHTTCCEEEEESSBTTTTBCCCH
T ss_pred             HHHHHhcCCCCEEEEcCCCcHhHHHHHH--HcCCEEEEccCCCC----CCHHHHHHHhccCCCEEEEeCCCCCCCCCCCH
Confidence            9999999999999999999999999999  89999999988643    89999999998889999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCC-CCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGS-TPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      +++++|+++|+++|+++|+|++|+.+.+.+ ....++..+...++++++.|+||.++++|+|+||+++.+       +++
T Consensus       170 ~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~-------~~~  242 (377)
T 3fdb_A          170 EWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSN-------PSD  242 (377)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCS-------HHH
T ss_pred             HHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheEEEeCC-------HHH
Confidence            999999999999999999999999998877 555566555445678999999999999999999988743       267


Q ss_pred             HHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCCceEEEEEecCccc
Q 038416          247 VDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE-IPCITCPVKPQGAMFVMVKLNVSM  324 (387)
Q Consensus       247 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~g~~~~~~~~~~~  324 (387)
                      ++.+..... .+++++++.+.++..+++.. +.++++..++++++++.+.+.|++ +|++.+ ..+.+++++|+.++...
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~  320 (377)
T 3fdb_A          243 AEHWQQLSPVIKDGASTLGLIAAEAAYRYG-TDFLNQEVAYLKNNHDFLLHEIPKRIPGAKI-TPMQATYLMWIDFRDTT  320 (377)
T ss_dssp             HHHHHHSCHHHHCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHSTTCEE-CCCSBCSEEEEECTTSC
T ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHhhCCCceE-ecCCeeEEEEEECcccC
Confidence            777776543 45678889999988888753 577889999999999999999998 888884 47888888899887532


Q ss_pred             ccCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHHHh
Q 038416          325 LEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       325 ~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      .     ..++...+++++||.+.||..|+.  ++++||+++.+++++++++++|+++++++
T Consensus       321 ~-----~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~~~e~i~~~l~~l~~~l~~~  376 (377)
T 3fdb_A          321 I-----EGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFATSREVLEEAIDRMAKAVSHH  376 (377)
T ss_dssp             C-----CSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHTTC
T ss_pred             C-----CHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCCCHHHHHHHHHHHHHHHhhc
Confidence            1     235677777778999999998875  68999999989999999999999988654

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=100.00  E-value=1.8e-45  Score=343.87  Aligned_cols=356  Identities=15%  Similarity=0.213  Sum_probs=296.7

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      +.+++++.+.+    ++++++.+.+++.+.+... ...|+..  ..++|+.+++++.+.++.++++++|++|+|+++++.
T Consensus        31 ~~~i~l~~~~~----~~~~~~~v~~a~~~~~~~~-~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~  103 (399)
T 1c7n_A           31 NEVVPLSVADM----EFKNPPELIEGLKKYLDET-VLGYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVF  103 (399)
T ss_dssp             TTCCCCCSSSC----SSCCCHHHHHHHHHHHHHC-CCSSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHH
T ss_pred             CCceeeeecCC----CCCCCHHHHHHHHHHHhcC-CCCCCCC--cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHH
Confidence            45677777765    6788999999999998653 3467764  799999999999877776678899999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCC-CccCChhhHHHhhc-cCceEEEEeCCCCCccccC
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEK-RWEVDLDGVEALAD-ENTVAIVIINPGNPCGNVF  165 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~~~~v~l~~p~nptG~~~  165 (387)
                      .++.+++++||+|+++.|+|+++...+.  ..|.+++.+++++++ ++.+|+++|+++++ +++++|++++|+||||.++
T Consensus       104 ~~~~~l~~~gd~vl~~~p~~~~~~~~~~--~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~  181 (399)
T 1c7n_A          104 NAVREFTKPGDGVIIITPVYYPFFMAIK--NQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVW  181 (399)
T ss_dssp             HHHHHHCCTTCEEEECSSCCTHHHHHHH--TTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCC
T ss_pred             HHHHHhcCCCCEEEEcCCCcHhHHHHHH--HcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCc
Confidence            9999999999999999999999999999  999999998875332 46689999999997 6889999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC--CccEEEEecCcccccccccceEEEEeeCCCCcccc
Q 038416          166 SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS--IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQN  243 (387)
Q Consensus       166 ~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~  243 (387)
                      |.+++++|+++|+++|+++|+||+|+.+.+++....++..+..  .++++++.|+||.++++|+|+||+++++       
T Consensus       182 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-------  254 (399)
T 1c7n_A          182 KKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKN-------  254 (399)
T ss_dssp             CHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCC-------
T ss_pred             CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEEEECC-------
Confidence            9999999999999999999999999998887765555655543  3578999999999998999999999864       


Q ss_pred             hhHHHHHHhhhh-cc-CCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCCceEEEEEec
Q 038416          244 SGFVDSIKGCLN-AA-SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE-IPCITCPVKPQGAMFVMVKL  320 (387)
Q Consensus       244 ~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~g~~~~~~~  320 (387)
                      +++++.+..... .. .+++++.+.++..+++.. +.++++..++++++++.+.+.|++ +|++.. ..+.+++++|+++
T Consensus       255 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~  332 (399)
T 1c7n_A          255 PDIRERFTKSRDATSGMPFTTLGYKACEICYKEC-GKWLDGCIKVIDKNQRIVKDFFEVNHPEIKA-PLIEGTYLQWIDF  332 (399)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCTTSBC-CCCSBSSEEEEEC
T ss_pred             HHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHhhCCCCeE-ecCCceEEEEEEc
Confidence            247777776543 22 367888998888888753 577888899999999999999998 888884 4778888888888


Q ss_pred             CcccccCCCcHHHHHHHHHHhcCeEEEcCCccC--CCCeEEEEeeCChHhHHHHHHHHHHHHHHhhh
Q 038416          321 NVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG--MKNWLRIAFAAEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       321 ~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~--~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      +...    .+..++...+++++||.+.||..|+  .++++||+++..++++++++++|+++++++++
T Consensus       333 ~~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~l~~~l~~l~~~l~~~~~  395 (399)
T 1c7n_A          333 RALK----MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLKN  395 (399)
T ss_dssp             GGGC----CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC-
T ss_pred             ccCC----CCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEeccCHHHHHHHHHHHHHHHHHHHh
Confidence            6421    1456777777667899999998886  36899999988889999999999999988764

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=100.00  E-value=9.6e-46  Score=349.98  Aligned_cols=353  Identities=22%  Similarity=0.316  Sum_probs=295.4

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCC--CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTA--HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI   86 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~   86 (387)
                      .+++++.|.|.  +++.+++.+.+++.+++...  ...+|++..|..+||+.+++++.+.++.+ ++++|++|+|+++++
T Consensus        77 ~~i~l~~g~p~--~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~-~~~~v~~t~G~~~al  153 (448)
T 3aow_A           77 DIISLAGGLPN--PKTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGIS-QDNDIMITSGSQQAL  153 (448)
T ss_dssp             SSEECCCCCCC--GGGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCC-TTSEEEEESSHHHHH
T ss_pred             CcEeCCCCCCC--chhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcC-ChhhEEEeCcHHHHH
Confidence            45677777662  22347888999999888753  12478887899999999999997766765 788999999999999


Q ss_pred             HHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc----c--CceEE-EEeCCCC
Q 038416           87 EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD----E--NTVAI-VIINPGN  159 (387)
Q Consensus        87 ~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~----~--~~~~v-~l~~p~n  159 (387)
                      ..++++++++||+|+++.|+|+++...++  ..|.+++.++++++   ++|+++|+++++    +  ++++| ++++|+|
T Consensus       154 ~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~--~~g~~~~~v~~~~~---g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~N  228 (448)
T 3aow_A          154 DLIGRVFLNPGDIVVVEAPTYLAALQAFN--FYEPQYIQIPLDDE---GMKVEILEEKLKELKSQGKKVKVVYTVPTFQN  228 (448)
T ss_dssp             HHHHHHHCCTTCEEEEEESCCHHHHHHHH--TTCCEEEEEEEETT---EECHHHHHHHHHHHHHTTCCEEEEEECCSSCT
T ss_pred             HHHHHHHcCCCCEEEEeCCChHHHHHHHH--HcCCEEEEeccCCC---CCCHHHHHHHHhhhhccCCCCeEEEECCCCCC
Confidence            99999999999999999999999999999  99999999988542   489999999887    5  67887 5689999


Q ss_pred             CccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCC
Q 038416          160 PCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNG  239 (387)
Q Consensus       160 ptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~  239 (387)
                      |||.++|.+++++|+++|++||+++|+||+|+.+.+++....++..++..++++++.||||.++ +|+|+||+++++   
T Consensus       229 PtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~GlriG~v~~~~---  304 (448)
T 3aow_A          229 PAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILA-PGFRIGWMVGDP---  304 (448)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTC-GGGCCEEEEECH---
T ss_pred             CcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcc-ccccEEEEEeCH---
Confidence            9999999999999999999999999999999999888766666777766678999999999998 999999999975   


Q ss_pred             cccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHHHHHHHhhc-CC-CCCCCCCCCceEE
Q 038416          240 ILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDET-NEAFFAKIIGLLKETADICYERIKE-IP-CITCPVKPQGAMF  315 (387)
Q Consensus       240 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~g~~  315 (387)
                           ++++.+..... ...+++++.|.++..+|+.. .+.++++..+.++++++.+.+.|++ +| ++. +..|.+|+|
T Consensus       305 -----~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~-~~~p~~g~~  378 (448)
T 3aow_A          305 -----GIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVK-WTKPEGGMF  378 (448)
T ss_dssp             -----HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCE-ECCCSBSSE
T ss_pred             -----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EeCCCccEE
Confidence                 78888876543 34567889999999888764 2567888889999999999999987 67 577 447888999


Q ss_pred             EEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC----CCeEEEEeeC-ChHhHHHHHHHHHHHHHHhhh
Q 038416          316 VMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM----KNWLRIAFAA-EPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~----~~~~Ri~~~~-~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      +|++++..     .+..++...++++ ||.+.||..|..    .+++||+++. +++++++++++|++++++..+
T Consensus       379 ~~v~~~~~-----~~~~~l~~~l~~~-gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~~~~~~L~~~l~~~~~  447 (448)
T 3aow_A          379 IWVTLPDG-----IDSKKMLERAIKK-GVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRLAETIKEELK  447 (448)
T ss_dssp             EEEECSTT-----CCHHHHHHHHHHT-TEECEEGGGGSTTCCCCSEEEEECSSSCTHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEcCCC-----CCHHHHHHHHHHC-CcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            99998642     2456777777655 999999988843    5799999975 789999999999999988764

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=100.00  E-value=4.8e-46  Score=349.01  Aligned_cols=355  Identities=22%  Similarity=0.345  Sum_probs=300.1

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCC-CCEEEcCChHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSP-EDVYLTLGCSQAI   86 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~-~~i~~~~g~~~a~   86 (387)
                      ..+++++.|.|    ++++++.+.+++++++......+|++..+..++|+.+++++.+.++..+++ ++|++|+|+++++
T Consensus        23 ~~~i~l~~~~~----~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~   98 (410)
T 3e2y_A           23 PSVVNLGQGFP----DISPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSL   98 (410)
T ss_dssp             TTSEECSSCCC----CSCCCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred             CCeEEecCCCC----CCCCCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHH
Confidence            45677777766    889999999999999976545578887789999999999999888877788 8999999999999


Q ss_pred             HHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCC---------CCCccCChhhHHHhhccCceEEEEeCC
Q 038416           87 EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLP---------EKRWEVDLDGVEALADENTVAIVIINP  157 (387)
Q Consensus        87 ~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~v~l~~p  157 (387)
                      ..++.+++++||+|+++.|+|.++...+.  ..|.+++.+++.+         ..++.+|++++++++++++++|++++|
T Consensus        99 ~~~~~~~~~~gd~vl~~~p~~~~~~~~~~--~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p  176 (410)
T 3e2y_A           99 FNSIQGLVDPGDEVIIMVPFYDCYEPMVR--MAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTP  176 (410)
T ss_dssp             HHHHHHHCCTTCEEEEEESCCTTHHHHHH--HTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTTEEEEEEESS
T ss_pred             HHHHHHhcCCCCEEEEeCCCchhhHHHHH--HcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCCCceEEEEeCC
Confidence            99999999999999999999999999999  9999999988763         245678999999999889999999999


Q ss_pred             CCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccC-CCccEEEEecCcccccccccceEEEEeeC
Q 038416          158 GNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFG-SIVPVITLGSISKRWIVPGWRLGWLVTSD  236 (387)
Q Consensus       158 ~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~s~sK~~~~~g~r~G~i~~~~  236 (387)
                      +||||.+++.+++++|+++|+++|+++|+|++|+++.+++....++..+. ..++++++.|+||.++++|+|+||+++++
T Consensus       177 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~  256 (410)
T 3e2y_A          177 HNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSIGPA  256 (410)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCCEEEECCH
T ss_pred             CCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceEEEEEECH
Confidence            99999999999999999999999999999999999998876665665554 34678999999999999999999999876


Q ss_pred             CCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhh------ccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 038416          237 PNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDE------TNEAFFAKIIGLLKETADICYERIKEIPCITCPVK  309 (387)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  309 (387)
                              ++++.+..... ..++++++.+.++..+++.      ..+.++++..++++++++.+.+.|+++ ++. +..
T Consensus       257 --------~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~  326 (410)
T 3e2y_A          257 --------HLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSV-GLK-PIV  326 (410)
T ss_dssp             --------HHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCE-EEB
T ss_pred             --------HHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHC-CCe-ecC
Confidence                    78888776643 4567888999998888873      224678888999999999999999988 777 347


Q ss_pred             CCceEEEEEecCcccc--c----CCCcHHHHHHHHHHhcCeEEEcCCccCC-------CCeEEEEeeCChHhHHHHHHHH
Q 038416          310 PQGAMFVMVKLNVSML--E----DIGDDLEFCLKLAKEESVIILPGRTVGM-------KNWLRIAFAAEPATLEDGLERI  376 (387)
Q Consensus       310 ~~~g~~~~~~~~~~~~--~----~~~~~~~~~~~ll~~~gi~v~~g~~~~~-------~~~~Ri~~~~~~e~~~~~~~~l  376 (387)
                      |.+++|+|+.+.....  +    +..++.+++..+++++||.+.||..|+.       .+++||+++.+++++++++++|
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~l~~~l~~l  406 (410)
T 3e2y_A          327 PDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAAEEIF  406 (410)
T ss_dssp             CSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCCCHHHHHHHHHHH
T ss_pred             CCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcCCHHHHHHHHHHH
Confidence            8899999998764211  0    0011347777788888999999998864       4899999999999999999998


Q ss_pred             HH
Q 038416          377 KA  378 (387)
Q Consensus       377 ~~  378 (387)
                      ++
T Consensus       407 ~~  408 (410)
T 3e2y_A          407 RA  408 (410)
T ss_dssp             HT
T ss_pred             Hh
Confidence            65

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=100.00  E-value=1.6e-45  Score=352.90  Aligned_cols=352  Identities=21%  Similarity=0.349  Sum_probs=290.1

Q ss_pred             CcHHHHHHHHHHhcCC---CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc-CCCCeEE
Q 038416           26 DSTVAEDAVVDALRTA---HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA-RPGANIL  101 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~---~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~g~~vl  101 (387)
                      .|+.+.+++.+.+...   ....|++..|..++|+.+++++.++++.++++++|++|+|+++++..++.+++ ++||.|+
T Consensus       107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vl  186 (500)
T 3tcm_A          107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGIL  186 (500)
T ss_dssp             SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEE
T ss_pred             CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEE
Confidence            4555666667766652   45689998999999999999999888888899999999999999999999998 8999999


Q ss_pred             EcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc------CceEEEEeCCCCCccccCCHHHHHHHHH
Q 038416          102 IPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE------NTVAIVIINPGNPCGNVFSYQHLQKIAR  175 (387)
Q Consensus       102 ~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~~~~l~~  175 (387)
                      ++.|+|.++...++  ..|.+++.++++.+++|.+|+++|++++++      ++++|++++|+||||.++|.+++++|++
T Consensus       187 v~~p~y~~~~~~~~--~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~  264 (500)
T 3tcm_A          187 VPIPQYPLYSASIA--LHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVK  264 (500)
T ss_dssp             EEESCCTHHHHHHH--HTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             EeCCCcHhHHHHHH--HcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHH
Confidence            99999999999999  999999999998877889999999999876      6889999999999999999999999999


Q ss_pred             HHHhcCcEEeecccccccccCC-CCCcccc----cc---CCCccEEEEecCcccc-cccccceEEEEeeCCCCcccchhH
Q 038416          176 TARNLGIIVIADEVYNHLAFGS-TPYVPMG----VF---GSIVPVITLGSISKRW-IVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       176 ~~~~~~~~li~D~~~~~~~~~~-~~~~~~~----~~---~~~~~~~~i~s~sK~~-~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      +|+++|+++|+|++|+.+.+++ ....++.    .+   ..+.++++++|+||.| |++|+|+||+++...     ++++
T Consensus       265 la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~-----~~~~  339 (500)
T 3tcm_A          265 FCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGF-----SAPV  339 (500)
T ss_dssp             HHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESC-----CTTH
T ss_pred             HHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCC-----CHHH
Confidence            9999999999999999988864 3344432    22   3334689999999998 899999999998310     1268


Q ss_pred             HHHHHhhhhccCCcchHHHHHHHHHhhhc---------cHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEE
Q 038416          247 VDSIKGCLNAASHPVTFIQAAVPRIVDET---------NEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVM  317 (387)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~  317 (387)
                      ++.+.+......+++.++|.++..+++..         ....+.+..++++++++.+.+.|+++|++.+. .|++++|+|
T Consensus       340 ~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~-~~~g~~~~~  418 (500)
T 3tcm_A          340 REQIYKIASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCN-EAEGAMYVF  418 (500)
T ss_dssp             HHHHHHHHHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECC-CCCBTTEEC
T ss_pred             HHHHHHHHhcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEe-cCCeEEEEe
Confidence            88887766556778889999998888631         12456777888999999999999999899854 889999999


Q ss_pred             EecCccc-------ccCCCcHHHHHHHHHHhcCeEEEcCCccCC---CCeEEEEeeCChHhHHHHHHHHHHHHHHhhh
Q 038416          318 VKLNVSM-------LEDIGDDLEFCLKLAKEESVIILPGRTVGM---KNWLRIAFAAEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       318 ~~~~~~~-------~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      +++..+.       ..+..++..++..+++++||.+.||..|+.   ..+||++++.+++++++++++|+++++++.+
T Consensus       419 ~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~i~~l~~~~~~~~~  496 (500)
T 3tcm_A          419 PQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTVFHEAFMS  496 (500)
T ss_dssp             CEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESCSCTTTHHHHHHHHHHHHHHHHH
T ss_pred             eeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence            6654210       001112334456778888999999999874   3589999998899999999999999988765

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=100.00  E-value=1.7e-45  Score=342.50  Aligned_cols=348  Identities=22%  Similarity=0.352  Sum_probs=293.1

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCC-CEEEcCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~g~~~a~~   87 (387)
                      .+++++.|.+    +++.++.+.+++.+.+... ...|++..+..++|+.+++++.+.+|.+++++ +|++|+|+++++.
T Consensus        31 ~~i~l~~~~~----~~~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~  105 (386)
T 1u08_A           31 QAINLSQGFP----DFDGPRYLQERLAHHVAQG-ANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALY  105 (386)
T ss_dssp             TCEECCCSSC----SSCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHH
T ss_pred             CeEEecCCCC----CCCCCHHHHHHHHHHHHhh-ccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHH
Confidence            4567777765    6778999999999998753 35788777899999999999988777777888 9999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      .++.+++++||+|+++.|+|+++...++  ..|.+++.++++.+ ++.+|+++|++++++++++|++++|+||||.++|.
T Consensus       106 ~~~~~~~~~gd~vl~~~p~~~~~~~~~~--~~g~~~~~v~~~~~-~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~  182 (386)
T 1u08_A          106 AAITALVRNGDEVICFDPSYDSYAPAIA--LSGGIVKRMALQPP-HFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQ  182 (386)
T ss_dssp             HHHHHHCCTTCEEEEEESCCTTHHHHHH--HTTCEEEEEECCTT-TCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCH
T ss_pred             HHHHHhCCCCCEEEEeCCCchhHHHHHH--HcCCEEEEeecCcc-cCcCCHHHHHHhhcccCEEEEEeCCCCCCCccCCH
Confidence            9999999999999999999999999999  99999999988643 56799999999998889999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccC-CCccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFG-SIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      +++++|+++|+++|+++|+|++|+.+.+++....++..+. ..++++++.|+||.++++|+|+||+++++        ++
T Consensus       183 ~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~--------~~  254 (386)
T 1u08_A          183 ADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPA--------PI  254 (386)
T ss_dssp             HHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCH--------HH
T ss_pred             HHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcCH--------HH
Confidence            9999999999999999999999999888776555554442 23568999999999999999999999875        67


Q ss_pred             HHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccc
Q 038416          247 VDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML  325 (387)
Q Consensus       247 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~  325 (387)
                      ++.+..... ..++++++.+.++..+|+.. +.++++..++++++++.+.+.|+++ ++. +..|.+|+++|++++... 
T Consensus       255 ~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~g~~~~~~~~~~~-  330 (386)
T 1u08_A          255 SAEIRKVHQYLTFSVNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILVNALNES-RLE-ILPCEGTYFLLVDYSAVS-  330 (386)
T ss_dssp             HHHHHHHHHHHTSSCCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTSS-SCE-ECCCCBSSEEEEECTTTC-
T ss_pred             HHHHHHHHHhhccCCChHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHC-CCe-ecCCCceEEEEEecCCCC-
Confidence            787776543 35667788888888888754 5678889999999999999999988 777 436778899999886420 


Q ss_pred             cCCCcHHHHHHHHHHhcCeEEEcCCccC----CCCeEEEEeeCChHhHHHHHHHHHH
Q 038416          326 EDIGDDLEFCLKLAKEESVIILPGRTVG----MKNWLRIAFAAEPATLEDGLERIKA  378 (387)
Q Consensus       326 ~~~~~~~~~~~~ll~~~gi~v~~g~~~~----~~~~~Ri~~~~~~e~~~~~~~~l~~  378 (387)
                        ..+..++...+++++||.+.||..|.    .++++||+++.+++++++++++|++
T Consensus       331 --~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~i~~~~~~l~~  385 (386)
T 1u08_A          331 --TLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQ  385 (386)
T ss_dssp             --CSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred             --CCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcCCHHHHHHHHHHHhh
Confidence              01456777778777899999998775    3579999999899999999998854

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=2.4e-45  Score=341.81  Aligned_cols=344  Identities=24%  Similarity=0.411  Sum_probs=291.0

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      .+++++.|.+    +++.++.+.+++.+.+... ...|++..+..++|+.+++++.+.+|.++++++|++|+|+++++..
T Consensus        42 ~~i~l~~~~~----~~~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~  116 (389)
T 1o4s_A           42 DVINLTAGEP----DFPTPEPVVEEAVRFLQKG-EVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFN  116 (389)
T ss_dssp             CCEECCCSSC----SSCCCHHHHHHHHHHHTTC-CCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHH
T ss_pred             CEEEccCCCC----CCCCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHH
Confidence            3566667665    5677899999999998754 3478877789999999999998777766788999999999999999


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      ++.+++++||+|+++.|+|+++...++  ..|.+++.+++++++++.+|+++|++++++++++|++++|+||||.++|.+
T Consensus       117 ~~~~l~~~gd~Vl~~~~~~~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~  194 (389)
T 1o4s_A          117 AFMALLDPGDEVIVFSPVWVSYIPQII--LAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRRE  194 (389)
T ss_dssp             HHHHHCCTTCEEEEEESCCTTHHHHHH--HTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHH
T ss_pred             HHHHhCCCCCEEEEcCCCchhHHHHHH--HcCCEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcCCCCCCCCCCCHH
Confidence            999999999999999999999999999  999999999986545678899999999988899999999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      ++++|+++|+++|+++|+|++|+.+.+++ ...++..+.. .++++++.|+||+++++|+|+||+++++        +++
T Consensus       195 ~l~~l~~~~~~~~~~li~Dea~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~~--------~~~  265 (389)
T 1o4s_A          195 FLEGLVRLAKKRNFYIISDEVYDSLVYTD-EFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSE--------KVA  265 (389)
T ss_dssp             HHHHHHHHHHHHTCEEEEECTTTTSBCSS-CCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCH--------HHH
T ss_pred             HHHHHHHHHHHcCCEEEEEccccccccCC-CCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEeCH--------HHH
Confidence            99999999999999999999999988765 2334444432 4568999999999989999999999975        677


Q ss_pred             HHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccccc
Q 038416          248 DSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE  326 (387)
Q Consensus       248 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~  326 (387)
                      +.+..... ...+++++.+.++..+|+..    +++..++++++++.+.+.|+++ ++.+. .|.+++++|+.++.    
T Consensus       266 ~~l~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~----  335 (389)
T 1o4s_A          266 TAVSKIQSHTTSCINTVAQYAALKALEVD----NSYMVQTFKERKNFVVERLKKM-GVKFV-EPEGAFYLFFKVRG----  335 (389)
T ss_dssp             HHHHHHHHHHTCSCCHHHHHHHHHHTTCC----CHHHHHHHHHHHHHHHHHHHHT-TCCCC-CCSBSSEEEEECSS----
T ss_pred             HHHHHHhhhcccCCCHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHhc-CCeee-cCCcceEEEEeCCC----
Confidence            77776543 34567888888888888753    6777888889999999999988 78744 67788899988751    


Q ss_pred             CCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHH
Q 038416          327 DIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       327 ~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~  381 (387)
                         +..++...+++++||.+.||..|+.++++||+++.+++++++++++|+++++
T Consensus       336 ---~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~~~~~~l~~~l~~l~~~l~  387 (389)
T 1o4s_A          336 ---DDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFLN  387 (389)
T ss_dssp             ---CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred             ---CHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEeCCHHHHHHHHHHHHHHHh
Confidence               4567777776577999999988877789999998899999999999988774

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=8.1e-46  Score=343.48  Aligned_cols=346  Identities=21%  Similarity=0.273  Sum_probs=287.7

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCC-CEEEcCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~g~~~a~~   87 (387)
                      .+++++.|.+    +++.++.+.+++.+++.......|++..+..++|+.+++++.+.+|.+++++ +|++|+|+++++.
T Consensus        26 ~~idl~~~~~----~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~  101 (376)
T 2dou_A           26 GLIDLSIGST----DLPPPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLA  101 (376)
T ss_dssp             CCEECSSCCC----CCCCCHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHH
T ss_pred             CEEeccCCCC----CCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHH
Confidence            3567777766    6678999999999998654345787655789999999999987777666666 9999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      .+++++.++||+|+++.|+|+++...++  ..|.+++.+++  .+++.+|++++++++++++++|++++|+||||.++|.
T Consensus       102 ~~~~~l~~~gd~vl~~~p~y~~~~~~~~--~~g~~~~~~~~--~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~  177 (376)
T 2dou_A          102 HLLLALTEPEDLLLLPEVAYPSYFGAAR--VASLRTFLIPL--REDGLADLKAVPEGVWREAKVLLLNYPNNPTGAVADW  177 (376)
T ss_dssp             HHHHHHCCTTCEEEEESSCCHHHHHHHH--HTTCEEEEECB--CTTSSBCGGGSCHHHHHHEEEEEECSSCTTTCCCCCH
T ss_pred             HHHHHhcCCCCEEEECCCCcHhHHHHHH--HcCCEEEEeeC--CCCCCCCHHHHHHhhccCceEEEECCCCCCcCccCCH
Confidence            9999999999999999999999999999  89999999987  4566789999999887788999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      +++++|+++|+++|+++|+|++|+.+.+++.....+...+..++++++.|+||.++++|+|+||+++++        +++
T Consensus       178 ~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~--------~~~  249 (376)
T 2dou_A          178 GYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGSE--------EAL  249 (376)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEECH--------HHH
T ss_pred             HHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEecCH--------HHH
Confidence            999999999999999999999999988766332223222334578999999999989999999999865        788


Q ss_pred             HHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccccc
Q 038416          248 DSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE  326 (387)
Q Consensus       248 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~  326 (387)
                      +.+..... .+.+++++.+.++..+++.. +.++++..+.++++++.+.+.|+++  +. +..+.+++++|++++..   
T Consensus       250 ~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~--~~-~~~~~~~~~~~~~~~~~---  322 (376)
T 2dou_A          250 ARLERVKGVIDFNQYAGVLRMGVEALKTP-KEVVRGYARVYRERALGMAEALKGV--LS-LLPPRATMYLWGRLPEG---  322 (376)
T ss_dssp             HHHHHHHHHHCCCSCHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHHHHHTTT--SE-ECCCCBSSEEEEECCTT---
T ss_pred             HHHHHHHHhcccCCCHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHh--cC-ccCCCeeEEEEEECCCC---
Confidence            88876543 44567888999998888753 6778889999999999999999886  55 33677888999988641   


Q ss_pred             CCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHH
Q 038416          327 DIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFC  380 (387)
Q Consensus       327 ~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~  380 (387)
                        .+..++...++++ ||.+.||..|+.  .+++||+++.+++++++++++|++++
T Consensus       323 --~~~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~Ris~~~~~~~i~~~l~~l~~~l  375 (376)
T 2dou_A          323 --VDDLEFGLRLVER-GVALAPGRGFGPGGKGFVRIALVRPLEELLEAAKRIREAL  375 (376)
T ss_dssp             --CCHHHHHHHHHHT-TEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHTC
T ss_pred             --CCHHHHHHHHHHC-CEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence              1456777777655 999999988864  68999999888999999999998764

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=100.00  E-value=6.3e-45  Score=339.20  Aligned_cols=350  Identities=20%  Similarity=0.320  Sum_probs=297.1

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      +.+++.+.|++    ++++++.+.+++.+.+... ...|+.  +..++++.+++++.+.++..+++++|++|+|+++++.
T Consensus        32 ~~~i~l~~~~~----~~~~~~~v~~a~~~~~~~~-~~~y~~--~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~  104 (391)
T 4dq6_A           32 NDLLPMWVADM----DFKAAPCIIDSLKNRLEQE-IYGYTT--RPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAIS  104 (391)
T ss_dssp             SCSEECCSSSC----SSCCCHHHHHHHHHHHTTC-CCCCBC--CCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHH
T ss_pred             CCceeccccCC----CCCCCHHHHHHHHHHHhCC-CCCCCC--CCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHH
Confidence            44567777765    8899999999999998764 335654  5589999999999988887788899999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccC--CCCCccCChhhHHHhhccCceEEEEeCCCCCccccC
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLL--PEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVF  165 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~  165 (387)
                      .++.+++++||+|+++.|+|+++...++  ..|.+++.++++  .+.++.+|++++++++++ ++++++++|+||||.++
T Consensus       105 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~nptG~~~  181 (391)
T 4dq6_A          105 LLINELTKANDKIMIQEPVYSPFNSVVK--NNNRELIISPLQKLENGNYIMDYEDIENKIKD-VKLFILCNPHNPVGRVW  181 (391)
T ss_dssp             HHHHHHSCTTCEEEECSSCCTHHHHHHH--HTTCEEEECCCEECTTSCEECCHHHHHHHCTT-EEEEEEESSBTTTTBCC
T ss_pred             HHHHHhCCCCCEEEEcCCCCHHHHHHHH--HcCCeEEeeeeeecCCCceEeeHHHHHHHhhc-CCEEEEECCCCCCCcCc
Confidence            9999999999999999999999999999  999999999987  345577899999999987 99999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC--CccEEEEecCcccccccccceEEEEeeCCCCcccc
Q 038416          166 SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS--IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQN  243 (387)
Q Consensus       166 ~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~  243 (387)
                      |.+++++|+++|+++|+++|+|++|+.+.+.+....++..+..  .++++++.|+||.++++|+|+||+++++       
T Consensus       182 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~-------  254 (391)
T 4dq6_A          182 TKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPD-------  254 (391)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCS-------
T ss_pred             CHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCC-------
Confidence            9999999999999999999999999999888776666666554  3678999999999999999999999864       


Q ss_pred             hhHHHHHHhhhh--ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCCceEEEEEec
Q 038416          244 SGFVDSIKGCLN--AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE-IPCITCPVKPQGAMFVMVKL  320 (387)
Q Consensus       244 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~g~~~~~~~  320 (387)
                      +++.+.+.....  ..++++++.+.++..+++. .+.++++..++++++++.+.+.|++ +|++.+. .+.+++++|+.+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~  332 (391)
T 4dq6_A          255 EKDYKLLDDAFTRIDIKRNNCFSLVATEASYNN-GESWLESFLEYLESNIDFAIKYINENMPKLKVR-KPEGTYLLWVDF  332 (391)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEC-CCSBSSEEEEEC
T ss_pred             HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEec-CCCccEEEEEEh
Confidence            257777766532  3447788888888888875 4567888999999999999999988 7888844 788888888888


Q ss_pred             CcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHH
Q 038416          321 NVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFC  380 (387)
Q Consensus       321 ~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~  380 (387)
                      +...    .+..++...+++++||.+.||..|+.  .+++||+++.+++++++++++|++++
T Consensus       333 ~~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l  390 (391)
T 4dq6_A          333 SALG----LSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLACPRSMLEEALIRIKNAI  390 (391)
T ss_dssp             GGGC----CCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred             hhcC----CCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence            6421    15667777776666999999988875  48999999999999999999998876

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=100.00  E-value=7.6e-45  Score=338.62  Aligned_cols=354  Identities=18%  Similarity=0.234  Sum_probs=291.1

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHH-HHHHHHHHHhhcCCCCCCCCCEEEcCChHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPS-ARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI   86 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~-lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~   86 (387)
                      +.+++++.+.+    ++++++.+.+++.+.+... ...|+..  ..+ +|+.+++++.+.++..+++++|++|+|+++++
T Consensus        28 ~~~i~l~~~~~----~~~~~~~v~~a~~~~~~~~-~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al  100 (390)
T 1d2f_A           28 ADLLPFTISDM----DFATAPCIIEALNQRLMHG-VFGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMV  100 (390)
T ss_dssp             --CEECCSSSC----SSCCCHHHHHHHHHHHTTC-CCCCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHH
T ss_pred             CCeeEeeecCC----CCCCCHHHHHHHHHHHhCC-CCCCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHH
Confidence            35677777765    6789999999999998653 3467764  578 99999999988788778889999999999999


Q ss_pred             HHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCC-CccCChhhHHHhhcc-CceEEEEeCCCCCcccc
Q 038416           87 EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEK-RWEVDLDGVEALADE-NTVAIVIINPGNPCGNV  164 (387)
Q Consensus        87 ~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~  164 (387)
                      ..++++++++||+|+++.|+|+++...++  ..|.+++.++++.++ +|.+|+++|++++++ ++++|++++|+||||.+
T Consensus       101 ~~~~~~l~~~gd~vl~~~p~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~  178 (390)
T 1d2f_A          101 SELIRQWSETGEGVVIHTPAYDAFYKAIE--GNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKV  178 (390)
T ss_dssp             HHHHHHSSCTTCEEEEEESCCHHHHHHHH--HTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCC
T ss_pred             HHHHHHhcCCCCEEEEcCCCcHHHHHHHH--HCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcC
Confidence            99999999999999999999999999999  899999999886543 466899999999975 78999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccch
Q 038416          165 FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNS  244 (387)
Q Consensus       165 ~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~  244 (387)
                      +|.+++++|+++|+++|+++|+||+|+.+.+++..+.++..+....... +.|+||.++++|+|+||+++++       +
T Consensus       179 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~~~~-------~  250 (390)
T 1d2f_A          179 WTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTGAYGIIEN-------S  250 (390)
T ss_dssp             CCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCCEEEEECS-------H
T ss_pred             cCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhhcccChhheEEEECC-------H
Confidence            9999999999999999999999999999888776555555554321013 9999999989999999999863       2


Q ss_pred             hHHHHHHhhhh--cc-CCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCCceEEEEEec
Q 038416          245 GFVDSIKGCLN--AA-SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE-IPCITCPVKPQGAMFVMVKL  320 (387)
Q Consensus       245 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~g~~~~~~~  320 (387)
                      ++++.+.....  .. .+++++.+.++..+++. .+.++++..++++++++.+.+.|++ +|++. +..+.+++++|+.+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~  328 (390)
T 1d2f_A          251 SSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQ-GAPWLDALRIYLKDNLTYIADKMNAAFPELN-WQIPQSTYLAWLDL  328 (390)
T ss_dssp             HHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-CCCCSBCSEEEEEC
T ss_pred             HHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCE-EecCCccEEEEEEc
Confidence            57777765543  23 36788888888888874 3567888899999999999999998 78887 44777888889888


Q ss_pred             CcccccCCCcHHHHHHHHHHhcCeEEEcCCccC--CCCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          321 NVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG--MKNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       321 ~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~--~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      +...    .+..++...+++++||.+.||..|+  .++++||+++.+++++++++++|++++++++
T Consensus       329 ~~~~----~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~l~~~~  390 (390)
T 1d2f_A          329 RPLN----IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAVR  390 (390)
T ss_dssp             GGGC----CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             cccC----CCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHhhC
Confidence            6421    1456777777657899999998886  3679999998888999999999999988753

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-45  Score=353.51  Aligned_cols=352  Identities=25%  Similarity=0.428  Sum_probs=282.4

Q ss_pred             cHHHHHHHHHHhcCC---CCCCCCCCCCcHHHHHHHHHHHhhcCC-CCCCCCCEEEcCChHHHHHHHHHhhcCCCC----
Q 038416           27 STVAEDAVVDALRTA---HYNCYSPTLGVPSARRGIADYLNRDLP-YKLSPEDVYLTLGCSQAIEISLSVLARPGA----   98 (387)
Q Consensus        27 ~~~v~~a~~~~~~~~---~~~~y~~~~~~~~lr~~ia~~~~~~~~-~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~----   98 (387)
                      |..+.+++.+++...   ....|++..|..++|+.+++++.++++ +++++++|++|+|+++++..++.+++++||    
T Consensus       103 P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d  182 (498)
T 3ihj_A          103 PEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRT  182 (498)
T ss_dssp             CHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSE
T ss_pred             CHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCC
Confidence            555556666666642   345799989999999999999998874 788899999999999999999999998875    


Q ss_pred             eEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc-----CceEEEEeCCCCCccccCCHHHHHHH
Q 038416           99 NILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE-----NTVAIVIINPGNPCGNVFSYQHLQKI  173 (387)
Q Consensus        99 ~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~v~l~~p~nptG~~~~~~~~~~l  173 (387)
                      .|+++.|+|..|...+.  ..|.+++.++++++++|.+|+++|++++++     ++++|++++|+||||.++|.+++++|
T Consensus       183 ~Vlv~~p~y~~~~~~~~--~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i  260 (498)
T 3ihj_A          183 GVMIPIPQYPLYSAVIS--ELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDV  260 (498)
T ss_dssp             EEEEEESCCTHHHHHHH--HTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred             EEEEeCCCchhHHHHHH--HcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHH
Confidence            99999999999999999  999999999998777899999999999876     58999999999999999999999999


Q ss_pred             HHHHHhcCcEEeecccccccccCCC-CCccccccC--------CCccEEEEecCcccc-cccccceEEEEeeCCCCcccc
Q 038416          174 ARTARNLGIIVIADEVYNHLAFGST-PYVPMGVFG--------SIVPVITLGSISKRW-IVPGWRLGWLVTSDPNGILQN  243 (387)
Q Consensus       174 ~~~~~~~~~~li~D~~~~~~~~~~~-~~~~~~~~~--------~~~~~~~i~s~sK~~-~~~g~r~G~i~~~~~~~~~~~  243 (387)
                      +++|+++|+++|+||+|+.+.+++. .+.++..+.        .+.++++++|+||.| |++|+|+||++...     .+
T Consensus       261 ~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~-----~~  335 (498)
T 3ihj_A          261 IHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVIN-----LH  335 (498)
T ss_dssp             HHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEES-----CC
T ss_pred             HHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEec-----CC
Confidence            9999999999999999999988754 445544331        234589999999999 78999999998411     01


Q ss_pred             hhHHHHHHhhhhccCCcchHHHHHHHHHhhh------ccH---HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceE
Q 038416          244 SGFVDSIKGCLNAASHPVTFIQAAVPRIVDE------TNE---AFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAM  314 (387)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~  314 (387)
                      +++++.+........+++.+.|.++..+++.      ..+   ..+.+..++++++++.+.+.|+++|++.+. .|.+++
T Consensus       336 ~~l~~~l~~~~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~-~p~gg~  414 (498)
T 3ihj_A          336 PEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCN-PLQGAM  414 (498)
T ss_dssp             HHHHHHHHHHHHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECC-CCCBSS
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEec-CCCeEE
Confidence            3788888776655667888999998888863      111   234567788999999999999999899844 889999


Q ss_pred             EEEEecCccc-------ccCCCcHHHHHHHHHHhcCeEEEcCCccCC---CCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          315 FVMVKLNVSM-------LEDIGDDLEFCLKLAKEESVIILPGRTVGM---KNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       315 ~~~~~~~~~~-------~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      |+|++++.+.       ..+..++..++..+++++||.+.||..|+.   ..++|++++.+++++++++++|++++++++
T Consensus       415 ~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~~~~e~l~~~i~~L~~~~~~~~  494 (498)
T 3ihj_A          415 YAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVKDFHINFL  494 (498)
T ss_dssp             EECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Confidence            9998764211       001212223367788888999999999874   358999999889999999999999999877


Q ss_pred             hc
Q 038416          385 KK  386 (387)
Q Consensus       385 ~~  386 (387)
                      ++
T Consensus       495 ~~  496 (498)
T 3ihj_A          495 EK  496 (498)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=100.00  E-value=8.6e-46  Score=343.32  Aligned_cols=340  Identities=19%  Similarity=0.262  Sum_probs=286.4

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      .+++++.|.+    +++.|+.+.+++.+.+..  ..+|++..+..++|+.+++++.+.++.++++++|++|+|+++++..
T Consensus        24 ~~i~l~~~~~----~~~~~~~v~~a~~~~~~~--~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~   97 (376)
T 3ezs_A           24 RGLDLGIGEP----QFETPKFIQDALKNHTHS--LNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFN   97 (376)
T ss_dssp             CCCBCSSCCC----CSCCCHHHHHHHHTTGGG--GGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHH
T ss_pred             CEEEeCCCCC----CCCCCHHHHHHHHHhhhh--cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHH
Confidence            6778888776    778899999999988732  4578887889999999999998877777788999999999999999


Q ss_pred             HHHhhcCC--CCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCC
Q 038416           89 SLSVLARP--GANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFS  166 (387)
Q Consensus        89 ~~~~l~~~--g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  166 (387)
                      ++.+++++  ||+|+++.|+|+++...++  ..|.+++.+++++++++  ++ ++++++.++++++++++|+||||.++|
T Consensus        98 ~~~~~~~~~~gd~vl~~~p~~~~~~~~~~--~~g~~~~~~~~~~~~~~--~~-~l~~~~~~~~~~v~~~~p~nptG~~~~  172 (376)
T 3ezs_A           98 FPSFVLFDYQNPTIAYPNPFYQIYEGAAK--FIKAKSLLMPLTKENDF--TP-SLNEKELQEVDLVILNSPNNPTGRTLS  172 (376)
T ss_dssp             HHHHHTTTCSSCEEEEEESCCTHHHHHHH--HTTCEEEEEECCGGGTS--CC-CCCHHHHHHCSEEEECSSCTTTCCCCC
T ss_pred             HHHHHcCCCCCCEEEEecCCcHhHHHHHH--HcCCEEEEcccCCCCCc--ch-hHHhhhccCCCEEEEcCCCCCcCCCCC
Confidence            99999999  9999999999999999999  99999999998655443  33 666667678999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccC-----CCccEEEEecCcccccccccceEEEEeeCCCCcc
Q 038416          167 YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFG-----SIVPVITLGSISKRWIVPGWRLGWLVTSDPNGIL  241 (387)
Q Consensus       167 ~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~  241 (387)
                      .+++++|+++|+++|+++|+||+|+.+.+++.....+...+     ..++++++.|+||.++++|+|+||+++++     
T Consensus       173 ~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~-----  247 (376)
T 3ezs_A          173 LEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDS-----  247 (376)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEECH-----
T ss_pred             HHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEEeeCH-----
Confidence            99999999999999999999999999888763333222211     34678999999999999999999999865     


Q ss_pred             cchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEec
Q 038416          242 QNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKL  320 (387)
Q Consensus       242 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~  320 (387)
                         ++++.+..... ..++++++.+.++..+++.  ..++++..++++++++.+.+.|+   ++.   .|.+++++|+++
T Consensus       248 ---~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~---~~~---~~~~~~~~~~~~  316 (376)
T 3ezs_A          248 ---RLLEKYKAFRAYLGYTSANAIQKASEAAWLD--DRHAEFFRNIYANNLKLARKIFK---NTL---IYPYSFYVYLPV  316 (376)
T ss_dssp             ---HHHHHHHHHHTTTCCCCCHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHST---TCC---CCSBSSEEEEEC
T ss_pred             ---HHHHHHHHHHhhhcCCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHhc---CCC---CCCcceEEEEEC
Confidence               78888877654 4567889999999888875  35578888999999999998887   443   678899999988


Q ss_pred             CcccccCCCcHHHHHHHHHHhcCeEEEcCCccC----CCCeEEEEeeCChHhHHHHHHHHHHHHHHh
Q 038416          321 NVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG----MKNWLRIAFAAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       321 ~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~----~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      +        +..++...+++++||.+.||..|+    ..+++||+++.+++++++++++|+++++++
T Consensus       317 ~--------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~~~  375 (376)
T 3ezs_A          317 Q--------NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIETYRENH  375 (376)
T ss_dssp             S--------CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCSCHHHHHHHHHHHHHHHCC-
T ss_pred             C--------CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence            6        356777877665899999999887    368999999889999999999999988654

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=100.00  E-value=2.3e-45  Score=344.40  Aligned_cols=355  Identities=25%  Similarity=0.398  Sum_probs=295.1

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCC-CEEEcCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~g~~~a~~   87 (387)
                      .+++++.|.+    +++.++.+.+++.+++... ...|++..+..++|+.+++++.+.+|.+++++ +|++|+|+++++.
T Consensus        26 ~~i~l~~~~~----~~~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~  100 (411)
T 2o0r_A           26 GAVNLGQGFP----DEDGPPKMLQAAQDAIAGG-VNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIA  100 (411)
T ss_dssp             TCEESSCSSC----SSCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHH
T ss_pred             CeeeccCcCC----CCCCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHH
Confidence            3567777665    6778999999999998763 45788877899999999999988777677788 9999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCC-CCccCChhhHHHhhccCceEEEEeCCCCCccccCC
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPE-KRWEVDLDGVEALADENTVAIVIINPGNPCGNVFS  166 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  166 (387)
                      .++.+++++||+|+++.|+|+++...+.  ..|.+++.++++.+ .++.+|+++|++++++++++|++++|+||||.++|
T Consensus       101 ~~~~~~~~~gd~Vl~~~~~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~~~nptG~~~~  178 (411)
T 2o0r_A          101 AAVLGLVEPGSEVLLIEPFYDSYSPVVA--MAGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLS  178 (411)
T ss_dssp             HHHHHHCCTTCEEEEEESCCTTHHHHHH--HTTCEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCC
T ss_pred             HHHHHhcCCCCEEEEeCCCcHhHHHHHH--HcCCEEEEeeccccccCCCCCHHHHHHhhccCceEEEEeCCCCCCCCCCC
Confidence            9999999999999999999999999999  99999999987643 34678999999999888999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEeeCCCCcccchh
Q 038416          167 YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSG  245 (387)
Q Consensus       167 ~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~  245 (387)
                      .+++++|+++|+++|+++|+|++|+.+.+++....++..+.. .++++++.|+||.++++|+|+||+++++        +
T Consensus       179 ~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~--------~  250 (411)
T 2o0r_A          179 ATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGPA--------E  250 (411)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEECCH--------H
T ss_pred             HHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEeeCH--------H
Confidence            999999999999999999999999998887765555555532 4578999999999999999999999865        6


Q ss_pred             HHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccc
Q 038416          246 FVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSM  324 (387)
Q Consensus       246 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~  324 (387)
                      +++.+..... ..++.+++.+.++..+++.. +.++++..++++++++.+.+.|+++ ++.+ ..|.+++++|+.++...
T Consensus       251 ~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~g~~~~~~~~~~~  327 (411)
T 2o0r_A          251 LIAGVRAAKQYLSYVGGAPFQPAVALALDTE-DAWVAALRNSLRARRDRLAAGLTEI-GFAV-HDSYGTYFLCADPRPLG  327 (411)
T ss_dssp             HHHHHHHHHHHHTSCCCTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHH-TCEE-CCCCBSSEEEEECGGGT
T ss_pred             HHHHHHHHHhhccCCCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHc-CCEe-cCCCeeEEEEEecCCCC
Confidence            7777766543 34566778888888888754 6778889999999999999999987 7773 36778889999886420


Q ss_pred             ccCCCcHHHHHHHHHHhcCeEEEcCCccC-------------CCCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          325 LEDIGDDLEFCLKLAKEESVIILPGRTVG-------------MKNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       325 ~~~~~~~~~~~~~ll~~~gi~v~~g~~~~-------------~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                        + .+..++...+++++||.+.||..|.             ..+++||+++.+++++++++++|++++++.+
T Consensus       328 --~-~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~~~~l~~~~~~~~  397 (411)
T 2o0r_A          328 --Y-DDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLDEAIRRLSVLAERPA  397 (411)
T ss_dssp             --C-CCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCSCHHHHHHHHHHHGGGGC---
T ss_pred             --C-CCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecCCHHHHHHHHHHHHHHHhccC
Confidence              0 1456777777777899999998772             2468999998889999999999988776554

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=100.00  E-value=2.2e-45  Score=345.59  Aligned_cols=352  Identities=18%  Similarity=0.276  Sum_probs=300.5

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      +.+++.|.|++    +++.++.+.+++++.+... ...|+..  ..++++.+++++.+.++.++++++|++|+|+++|++
T Consensus        61 ~~~i~~~~~~~----~~~~~~~v~~a~~~~~~~~-~~~y~~~--~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~  133 (421)
T 3l8a_A           61 PELLQMWVADM----DFLPVPEIKEAIINYGREH-IFGYNYF--NDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAIS  133 (421)
T ss_dssp             TTCEECCSSCC----CSCCCHHHHHHHHHHHHHC-CSSCBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHH
T ss_pred             CCeeecccCCC----CCCCCHHHHHHHHHHHhcC-CcCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHH
Confidence            45677888765    8899999999999998764 3366653  389999999999988887788899999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccC-CCCCccCChhhHHHhhc-cCceEEEEeCCCCCccccC
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLL-PEKRWEVDLDGVEALAD-ENTVAIVIINPGNPCGNVF  165 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~~-~~~~~v~l~~p~nptG~~~  165 (387)
                      .+++++.++||+|+++.|+|+++...+.  ..|.+++.+++. .+.++.+|+++|+++++ +++++|++++|+||||.++
T Consensus       134 ~a~~~~~~~gd~Vi~~~~~y~~~~~~~~--~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~  211 (421)
T 3l8a_A          134 IALQAFSEKGDAVLINSPVYYPFARTIR--LNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVW  211 (421)
T ss_dssp             HHHHHHSCTEEEEEEEESCCHHHHHHHH--HTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCC
T ss_pred             HHHHHhcCCCCEEEECCCCcHHHHHHHH--HCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcC
Confidence            9999999999999999999999999999  999999999986 45557789999999997 7899999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC--CccEEEEecCcccccccccceEEEEeeCCCCcccc
Q 038416          166 SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS--IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQN  243 (387)
Q Consensus       166 ~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~  243 (387)
                      +.+++++|+++|+++|+++|+||+|+++.+.+....++..+..  .++++++.|+||.++++|+|+||+++++       
T Consensus       212 ~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~-------  284 (421)
T 3l8a_A          212 DNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQN-------  284 (421)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCS-------
T ss_pred             CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCC-------
Confidence            9999999999999999999999999999988876667666543  4678999999999999999999999973       


Q ss_pred             hhHHHHHHhhh-h-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecC
Q 038416          244 SGFVDSIKGCL-N-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLN  321 (387)
Q Consensus       244 ~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~  321 (387)
                      +++.+.+.... . ..++++++++.++.++++. .++++++..++++++++++.+.|+++|++..+ .+.++++.|+.++
T Consensus       285 ~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~-~~~~~~~~~v~~~  362 (421)
T 3l8a_A          285 ESLRRKFQYRQLANNQHEVPTVGMIATQAAFQY-GKPWLEELKTVIEGNIKLVIKELEAKTKIKVM-EPEGTYLVWLDFS  362 (421)
T ss_dssp             HHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEE-CCSBSSEEEEECG
T ss_pred             HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhCCCceEe-CCCeeEEEEEecc
Confidence            26777776654 2 3457888999998888874 56778999999999999999999887788844 7888989999886


Q ss_pred             cccccCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHH
Q 038416          322 VSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       322 ~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~  381 (387)
                      ....    +..++...+++++||.+.+|..|+.  .+++||+++.+++++++++++|+++++
T Consensus       363 ~~~~----~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~i~~~l~~l~~~l~  420 (421)
T 3l8a_A          363 AYAI----AQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVATPKNTVQEALSRIISVFG  420 (421)
T ss_dssp             GGTC----CTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHC-
T ss_pred             ccCC----CHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence            5211    3457777777778999999988865  689999999999999999999998765

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=100.00  E-value=2.5e-45  Score=346.09  Aligned_cols=357  Identities=22%  Similarity=0.362  Sum_probs=297.0

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCC--CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCC-CEEEcCChHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTA--HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQA   85 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~g~~~a   85 (387)
                      .+++++.|.+    +++.++.+.+++.+++...  ....|++..+..++|+.+++++.+.++.+++++ +|++|+|++++
T Consensus        38 ~~i~l~~~~~----~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a  113 (429)
T 1yiz_A           38 KPLNLGQGFP----DYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEA  113 (429)
T ss_dssp             CCEECCSSSC----SSCCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred             CEEEecCCCC----CCCCCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHH
Confidence            4667777765    6678999999999998752  234788777899999999999988777667888 99999999999


Q ss_pred             HHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCC--------CccCChhhHHHhhccCceEEEEeCC
Q 038416           86 IEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEK--------RWEVDLDGVEALADENTVAIVIINP  157 (387)
Q Consensus        86 ~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~v~l~~p  157 (387)
                      +..++++++++||+|+++.|+|+++...++  ..|.+++.++++.++        ++.+|+++|++++++++++|++++|
T Consensus       114 ~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p  191 (429)
T 1yiz_A          114 LYATIQGHVDEGDEVIIIEPFFDCYEPMVK--AAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTP  191 (429)
T ss_dssp             HHHHHHHHCCTTCEEEEEESCCTTHHHHHH--HTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTEEEEEEESS
T ss_pred             HHHHHHHhcCCCCEEEEcCCCchhHHHHHH--HcCCEEEEEeCCcccccccccccCcccCHHHHHHHhccCceEEEECCC
Confidence            999999999999999999999999999999  899999999986543        5678999999999888999999999


Q ss_pred             CCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccC-CCccEEEEecCcccccccccceEEEEeeC
Q 038416          158 GNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFG-SIVPVITLGSISKRWIVPGWRLGWLVTSD  236 (387)
Q Consensus       158 ~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~s~sK~~~~~g~r~G~i~~~~  236 (387)
                      +||||.++|.+++++|+++|+++|+++|+||+|+++.+++.+..++..+. ..++++++.|+||.++++|+|+||+++++
T Consensus       192 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~  271 (429)
T 1yiz_A          192 HNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPE  271 (429)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEESCH
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcceEEEEeCH
Confidence            99999999999999999999999999999999999988776555555553 34678999999999998999999999975


Q ss_pred             CCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhh-----cc-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 038416          237 PNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDE-----TN-EAFFAKIIGLLKETADICYERIKEIPCITCPVK  309 (387)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~-----~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  309 (387)
                              ++++.+..... ..++.+++.+.++..+|+.     .. +.++++..++++++++.+.+.|+++ ++. +..
T Consensus       272 --------~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~  341 (429)
T 1yiz_A          272 --------ALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-GMN-PTV  341 (429)
T ss_dssp             --------HHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH-TCE-EEE
T ss_pred             --------HHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhC-CCc-ccC
Confidence                    67887776543 4567888899888888876     31 4668888899999999999999987 677 336


Q ss_pred             CCceEEEEEecCcccc-------cCCCcHHHHHHHHHHhcCeEEEcCCccCC-------CCeEEEEeeCChHhHHHHHHH
Q 038416          310 PQGAMFVMVKLNVSML-------EDIGDDLEFCLKLAKEESVIILPGRTVGM-------KNWLRIAFAAEPATLEDGLER  375 (387)
Q Consensus       310 ~~~g~~~~~~~~~~~~-------~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-------~~~~Ri~~~~~~e~~~~~~~~  375 (387)
                      |.+|+++|++++....       ++..+..++...+++++||.+.||..|..       .+++||+++.+++++++++++
T Consensus       342 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i~~~l~~  421 (429)
T 1yiz_A          342 PQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEI  421 (429)
T ss_dssp             CSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECCSCHHHHHHHHHH
T ss_pred             CCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEecCCHHHHHHHHHH
Confidence            7788999998864210       00013456777777778999999987752       579999999899999999999


Q ss_pred             HHHHHH
Q 038416          376 IKAFCQ  381 (387)
Q Consensus       376 l~~~~~  381 (387)
                      |+++++
T Consensus       422 l~~~l~  427 (429)
T 1yiz_A          422 LRKWKG  427 (429)
T ss_dssp             HHHHSC
T ss_pred             HHHhcc
Confidence            988764

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=100.00  E-value=9.4e-45  Score=344.17  Aligned_cols=353  Identities=16%  Similarity=0.189  Sum_probs=287.1

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcC----CCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRT----AHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCS   83 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~   83 (387)
                      +.+++++.|++    +++.++.+.+++.+++..    .....|++..+..+||+.+++++.  ++.++++++|++|+|++
T Consensus        69 ~~~i~l~~g~~----~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~~i~~t~G~~  142 (449)
T 3qgu_A           69 AKIISLGIGDT----TEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFY--GHAGRAADEIFISDGSK  142 (449)
T ss_dssp             CCCEECSSCCC----CCCCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGGGEEEESCHH
T ss_pred             CCEEEeeCCCC----CCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHHHEEEccCHH
Confidence            35677778765    889999999999998874    234578887899999999999997  66677889999999999


Q ss_pred             HHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCce----------eeeeccCCCCCccCChhhHHHhhccCceEEE
Q 038416           84 QAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLE----------ARHYDLLPEKRWEVDLDGVEALADENTVAIV  153 (387)
Q Consensus        84 ~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~  153 (387)
                      +++..+ ..++++||+|+++.|+|.++...+.  ..|.+          +..++++.++++..+++++     +++++|+
T Consensus       143 ~al~~~-~~l~~~gd~Vl~~~p~~~~~~~~~~--~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~  214 (449)
T 3qgu_A          143 CDIARI-QMMFGSKPTVAVQDPSYPVYVDTSV--MMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-----KRTDIIF  214 (449)
T ss_dssp             HHHHHH-HHHHCSSSCEEEEESCCTHHHHHHH--HHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-----CCCSEEE
T ss_pred             HHHHHH-HHHhCCCCEEEEcCCCChhHHHHHH--HcCCcccccccccceeEEEecccccCCcCChhHc-----CCCCEEE
Confidence            999998 8888999999999999999999999  88888          8888887655555565432     5789999


Q ss_pred             EeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEE
Q 038416          154 IINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWL  232 (387)
Q Consensus       154 l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i  232 (387)
                      +++|+||||.++|.+++++|+++|+++|+++|+||+|+++.+++....++..+.. .++++++.|+||.|+++|+|+||+
T Consensus       215 l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~  294 (449)
T 3qgu_A          215 FCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWT  294 (449)
T ss_dssp             EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEE
T ss_pred             EeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccceeEEE
Confidence            9999999999999999999999999999999999999999887765556655543 456899999999999999999999


Q ss_pred             EeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 038416          233 VTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ  311 (387)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  311 (387)
                      ++++.-.......+...+..... ...+++++++.++..++......++++..++++++++.+.+.|+++ ++.+. .+.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~  372 (449)
T 3qgu_A          295 VVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM-GFSVY-GGD  372 (449)
T ss_dssp             ECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEE-ESS
T ss_pred             ecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeee-CCC
Confidence            99752100000001123333322 3457888999999888876445678889999999999999999988 77743 677


Q ss_pred             ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHHH
Q 038416          312 GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       312 ~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~~  382 (387)
                      +++++|+.++.      .+..++...+++++||.+.||..|+.  .+++||++..+++++++++++|++++++
T Consensus       373 ~~~~~~~~~~~------~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~  439 (449)
T 3qgu_A          373 DAPYIWVGFPG------KPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFGSRENILEAVRRFKEAYGK  439 (449)
T ss_dssp             SSSEEEEECTT------SCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHC-
T ss_pred             CeeEEEEECCC------CCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            89999998861      25678888888888999999988865  5899999988999999999999988754

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=100.00  E-value=1.6e-44  Score=338.26  Aligned_cols=362  Identities=26%  Similarity=0.461  Sum_probs=295.1

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      .+++++.|.+... +++.++.+.+++.+.+... ...|+...+..++|+.+++++...++.++++++|++|+|+++++..
T Consensus        39 ~~i~l~~~~~~~~-~~~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~  116 (406)
T 1xi9_A           39 KVIRLNIGDPVKF-DFQPPEHMKEAYCKAIKEG-HNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQL  116 (406)
T ss_dssp             CCEECCCCCGGGT-TCCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHH
T ss_pred             CEEEecCCCCCcC-CCCCCHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHH
Confidence            3556667655221 4677899999999988754 2468877788999999999998877777888999999999999999


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      ++.+++++||+|+++.|+|+++...++  ..|.+++.+++++++++.+|+++|++++++++++|++++|+||||.++|.+
T Consensus       117 ~~~~l~~~gd~Vl~~~~~~~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~  194 (406)
T 1xi9_A          117 IFGALLDPGDEILVPGPSYPPYTGLVK--FYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKK  194 (406)
T ss_dssp             HHHHHCCTTCEEEEEESCCHHHHHHHH--HTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHH
T ss_pred             HHHHhCCCCCEEEEcCCCCccHHHHHH--HcCCEEEEeecCCCcCCcCCHHHHHHhhCcCceEEEEECCCCCCCCCcCHH
Confidence            999999999999999999999999999  899999999886545677899999999988899999999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCcc-EEEEecCcccccccccceEEEE--eeCCCCcccchh
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVP-VITLGSISKRWIVPGWRLGWLV--TSDPNGILQNSG  245 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~s~sK~~~~~g~r~G~i~--~~~~~~~~~~~~  245 (387)
                      ++++|+++|+++|+++|+|++|+.+.+++ ...++..++ .++ +++++|+||.++++|+|+||++  +++.. .   .+
T Consensus       195 ~l~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~-~---~~  268 (406)
T 1xi9_A          195 TLEEILNIAGEYEIPVISDEIYDLMTYEG-EHISPGSLT-KDVPVIVMNGLSKVYFATGWRLGYMYFVDPENK-L---SE  268 (406)
T ss_dssp             HHHHHHHHHHHHTCCEEEECTTTTCBSSS-CCCCHHHHC-SSSCEEEEEESTTTTCCGGGCCEEEEEECTTCT-T---HH
T ss_pred             HHHHHHHHHHHcCCEEEEEcCccccccCC-CCCCHHHcC-CCceEEEEeccccccCCCccEEEEEEEecCchh-H---HH
Confidence            99999999999999999999999988743 333444454 456 8999999999988999999999  54210 0   04


Q ss_pred             HHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccc
Q 038416          246 FVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML  325 (387)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~  325 (387)
                      +++.+.......++++++.+.++..+|+.. .+++++..++++++++.+.+.|+++|++.+. .|.+++++|+.++... 
T Consensus       269 l~~~l~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~-  345 (406)
T 1xi9_A          269 VREAIDRLARIRLCPNTPAQFAAIAGLTGP-MDYLKEYMKKLKERRDYIYKRLNEIPGISTT-KPQGAFYIFPKIEVGP-  345 (406)
T ss_dssp             HHHHHHHHHHHTCCSCSHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHHHHHHTSTTEECC-CCCBSSEECCEECSCS-
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHhCCCCeee-cCCeeEEEEEecCccC-
Confidence            667676554322677888999998888643 3457888899999999999999998888843 6778888887775310 


Q ss_pred             cCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHHHhhh
Q 038416          326 EDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       326 ~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                       + .+..++...+++++||.+.||..|+.  .+++||+++.+++++++++++|+++++++.+
T Consensus       346 -~-~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~~~~~~i~~~~~~l~~~l~~~~~  405 (406)
T 1xi9_A          346 -W-KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFMKERLK  405 (406)
T ss_dssp             -C-SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHHC--
T ss_pred             -C-CCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHHHhc
Confidence             1 14567777776678999999988865  6899999998899999999999999987643

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=100.00  E-value=9.5e-44  Score=334.73  Aligned_cols=321  Identities=20%  Similarity=0.284  Sum_probs=270.0

Q ss_pred             CCCCCCCCcHHHHHHHHHHHhhcCCCCCC-------CCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhc
Q 038416           44 NCYSPTLGVPSARRGIADYLNRDLPYKLS-------PEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAG  116 (387)
Q Consensus        44 ~~y~~~~~~~~lr~~ia~~~~~~~~~~~~-------~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~  116 (387)
                      .+|++..|+.+||+++++++.+.++....       +++|++|+|+++++..++.+++++||+|+++.|+|+++...++ 
T Consensus        72 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-  150 (425)
T 2r2n_A           72 LQYSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLH-  150 (425)
T ss_dssp             TSCCCTTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHG-
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHH-
Confidence            36888899999999999999887776553       3799999999999999999999999999999999999999999 


Q ss_pred             cCCCceeeeeccCCCCCccCChhhHHHhhc------------cCceEEEE-eCCCCCccccCCHHHHHHHHHHHHhcCcE
Q 038416          117 SNNNLEARHYDLLPEKRWEVDLDGVEALAD------------ENTVAIVI-INPGNPCGNVFSYQHLQKIARTARNLGII  183 (387)
Q Consensus       117 ~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~v~l-~~p~nptG~~~~~~~~~~l~~~~~~~~~~  183 (387)
                       ..|.+++.++++.+   ++|+++|+++++            +++++|++ ++|+||||.++|.+++++|+++|++||++
T Consensus       151 -~~g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~  226 (425)
T 2r2n_A          151 -PLGCNIINVASDES---GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFL  226 (425)
T ss_dssp             -GGTCEEEEECEETT---EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCE
T ss_pred             -HcCCEEEEeCcCCC---CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCE
Confidence             99999999987532   589999999886            35777765 68899999999999999999999999999


Q ss_pred             EeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcch
Q 038416          184 VIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVT  262 (387)
Q Consensus       184 li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  262 (387)
                      +|+||+|+++.+++....++..++..+++++++|+||.++ +|+|+||+++++        ++++.+..... ...++++
T Consensus       227 li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~GlRiG~~~~~~--------~l~~~l~~~~~~~~~~~~~  297 (425)
T 2r2n_A          227 IIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-SGLRIGFLTGPK--------PLIERVILHIQVSTLHPST  297 (425)
T ss_dssp             EEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-STTCCEEEEEEH--------HHHHHHHHHHHTTTCSSCH
T ss_pred             EEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhcc-CccceEEEecCH--------HHHHHHHHHHHHhcCCCCH
Confidence            9999999999888766666766766678999999999997 999999999986        78888877653 4567889


Q ss_pred             HHHHHHHHHhhhcc----HHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHH
Q 038416          263 FIQAAVPRIVDETN----EAFFAKIIGLLKETADICYERIKE-IPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLK  337 (387)
Q Consensus       263 ~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  337 (387)
                      +.|.++..+|+...    ..++++..+.++++++.+.+.|++ +|++..+..|.+|+|+|++++..     .+..+++..
T Consensus       298 ~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~-----~~~~~~~~~  372 (425)
T 2r2n_A          298 FNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGI-----NDVKELIEE  372 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTC-----SCCHHHHHT
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCC-----CCHHHHHHH
Confidence            99999998887522    356778888999999999999987 67763244788999999998642     134454445


Q ss_pred             HHHhcCeEEEcCCccCC-----CCeEEEEee-CChHhHHHHHHHHHHHHHHh
Q 038416          338 LAKEESVIILPGRTVGM-----KNWLRIAFA-AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       338 ll~~~gi~v~~g~~~~~-----~~~~Ri~~~-~~~e~~~~~~~~l~~~~~~~  383 (387)
                      .+.++||.+.||..|+.     .+++||+++ .+++++++++++|++++++.
T Consensus       373 ~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~  424 (425)
T 2r2n_A          373 KAVKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKES  424 (425)
T ss_dssp             HHHHTTEECEEGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCcEEechhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence            55778999999998864     479999997 78999999999999998764

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=100.00  E-value=1.8e-43  Score=326.95  Aligned_cols=336  Identities=24%  Similarity=0.400  Sum_probs=283.3

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      .+++++.|.+    +++.++.+.+++.+.+... ...|++..+..++|+.+++++.+.++.++++++|++|+|+++++..
T Consensus        30 ~~i~l~~~~~----~~~~~~~v~~a~~~~~~~~-~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~  104 (370)
T 2z61_A           30 KVIHLEIGEP----DFNTPKPIVDEGIKSLKEG-KTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFF  104 (370)
T ss_dssp             CCEECCCCSC----SSCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHH
T ss_pred             CEEEccCCCC----CCCCCHHHHHHHHHHHHcC-ccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHH
Confidence            4566777766    5667899999999998754 3478877789999999999999888877888999999999999999


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      ++.+++++||+|+++.|+|+++...++  ..|.+++.++        +|+++|++++++++++|++++|+||||.++|.+
T Consensus       105 ~~~~~~~~gd~vl~~~p~~~~~~~~~~--~~g~~~~~v~--------~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~  174 (370)
T 2z61_A          105 ALSSIIDDGDEVLIQNPCYPCYKNFIR--FLGAKPVFCD--------FTVESLEEALSDKTKAIIINSPSNPLGEVIDRE  174 (370)
T ss_dssp             HHHHHCCTTCEEEEESSCCTHHHHHHH--HTTCEEEEEC--------SSHHHHHHHCCSSEEEEEEESSCTTTCCCCCHH
T ss_pred             HHHHhcCCCCEEEEeCCCchhHHHHHH--HcCCEEEEeC--------CCHHHHHHhcccCceEEEEcCCCCCcCcccCHH
Confidence            999999999999999999999999999  8999988876        589999999988899999999999999999966


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccC-CCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFG-SIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                          |.++|+++|+++|+||+|+.+.+++. ..++..+. ..++++++.|+||.++++|+|+||+++++        +++
T Consensus       175 ----l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~--------~~~  241 (370)
T 2z61_A          175 ----IYEFAYENIPYIISDEIYNGLVYEGK-CYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISND--------EII  241 (370)
T ss_dssp             ----HHHHHHHHCSEEEEECTTTTCBSSSC-CCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCH--------HHH
T ss_pred             ----HHHHHHHcCCEEEEEcchhhcccCCC-CcCHHHccCCCCcEEEEecChhccCCccceEEEEEECH--------HHH
Confidence                89999999999999999999887663 33444442 34578999999999988999999999976        688


Q ss_pred             HHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccccc
Q 038416          248 DSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE  326 (387)
Q Consensus       248 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~  326 (387)
                      +.+..... ..++++++.+.++..+|+...+.++++..++++++++.+.+.|+++ ++.+. .|.+++++|+.++.    
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~----  315 (370)
T 2z61_A          242 EAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF-GWEVN-NPIGAYYVFPNIGE----  315 (370)
T ss_dssp             HHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCC-CCCBTTEECCBCSS----
T ss_pred             HHHHHHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc-CCeec-CCCcceEEEEecCC----
Confidence            87776543 4467888899988888874125678888999999999999999988 77743 67788888887763    


Q ss_pred             CCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHH
Q 038416          327 DIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       327 ~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~  381 (387)
                         +..++...+++++||.+.||..|+.  .+++||+++.+++++++++++|+++++
T Consensus       316 ---~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~~~~~~i~~~~~~l~~~l~  369 (370)
T 2z61_A          316 ---DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYANSYENIKEGLERIKEFLN  369 (370)
T ss_dssp             ---CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred             ---CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence               3567777776577999999988874  689999999899999999999988774

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=100.00  E-value=8.9e-44  Score=335.82  Aligned_cols=350  Identities=18%  Similarity=0.229  Sum_probs=278.9

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcC----CCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRT----AHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQ   84 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~   84 (387)
                      .++++|.|++    +++.++.+.+++++++..    ....+|++..+..+||+.+++|+.+  ++++++++|++|+|+++
T Consensus        57 ~~i~l~~~~~----~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~--~~~~~~~~i~~t~G~~~  130 (432)
T 3ei9_A           57 QVISLGIGDT----TEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYG--GLGIGDDDVFVSDGAKC  130 (432)
T ss_dssp             CCEECSSCCC----CSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHT--TTTCCGGGEEEESCHHH
T ss_pred             CeEEccCCCC----CCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHc--cCCCCcceEEECCChHH
Confidence            5678888866    789999999999998873    2234788778999999999999974  45667899999999999


Q ss_pred             HHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCc------------eeeeeccCCCCCccCChhhHHHhhccCceEE
Q 038416           85 AIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNL------------EARHYDLLPEKRWEVDLDGVEALADENTVAI  152 (387)
Q Consensus        85 a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v  152 (387)
                      ++..+ ..++++||.|+++.|+|+++...++  ..|.            ++..++++.+.++..+++.     .++++++
T Consensus       131 al~~l-~~l~~~gd~Vl~~~p~y~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~v  202 (432)
T 3ei9_A          131 DISRL-QVMFGSNVTIAVQDPSYPAYVDSSV--IMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-----VGRTDII  202 (432)
T ss_dssp             HHHHH-HHHHCTTCCEEEEESCCTHHHHHHH--HHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----CCCCSEE
T ss_pred             HHHHH-HHHcCCCCEEEEeCCCCHHHHHHHH--HcCCcccccccccccCceEEeccCcccCCcCChhh-----CCCCCEE
Confidence            99975 6777899999999999999988877  5553            5777777655455555443     3578999


Q ss_pred             EEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccC-CCccEEEEecCcccccccccceEE
Q 038416          153 VIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFG-SIVPVITLGSISKRWIVPGWRLGW  231 (387)
Q Consensus       153 ~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~s~sK~~~~~g~r~G~  231 (387)
                      ++++|+||||.+++.+++++|+++|++||+++|+||+|+++.+++.+. ++..+. ..++++++.|+||.|+++|+|+||
T Consensus       203 ~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~-~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~  281 (432)
T 3ei9_A          203 FFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPR-SIFEIPGAEEVAMETASFSNYAGFTGVRLGW  281 (432)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCS-SGGGSTTGGGTEEEEEESHHHHCTTTTCCEE
T ss_pred             EEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCC-ChhhcCCCCCeEEEEecchhccCCcccceEE
Confidence            999999999999999999999999999999999999999988765433 333332 245789999999999999999999


Q ss_pred             EEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 038416          232 LVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKP  310 (387)
Q Consensus       232 i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  310 (387)
                      +++++.........+.+.+..... ...+++++++.++..++......++++..++++++++++.+.|+++ ++.+. .+
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~  359 (432)
T 3ei9_A          282 TVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL-GYDVY-GG  359 (432)
T ss_dssp             EECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEE-EC
T ss_pred             EEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC-Cceec-CC
Confidence            999762100000012566655433 3456788899988888875445678899999999999999999988 77733 56


Q ss_pred             CceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHH
Q 038416          311 QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       311 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~  381 (387)
                      .+++|+|+.++.      .+..++...+++++||.+.||..|+.  .+++||+++.+++++++++++|++.-+
T Consensus       360 ~~~~~~~~~~~~------~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~rl~~~~~  426 (432)
T 3ei9_A          360 KNAPYVWVHFPN------QSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENILEACRRFKQLYK  426 (432)
T ss_dssp             SSSSEEEEECTT------SCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred             CcceEEEEECCC------CCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecCCHHHHHHHHHHHHHHhh
Confidence            778899998872      25667888888888999999998875  689999998899999999999987644

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=100.00  E-value=7.4e-44  Score=330.91  Aligned_cols=340  Identities=26%  Similarity=0.421  Sum_probs=281.8

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      .+++++.|.+    +++.++.+.+++.+++..  ...|+...+..++|+.+++++      ++++++|++|+|+++++..
T Consensus        26 ~~i~l~~~~~----~~~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~------~~~~~~v~~~~g~~~a~~~   93 (381)
T 1v2d_A           26 GAVNLGQGFP----SNPPPPFLLEAVRRALGR--QDQYAPPAGLPALREALAEEF------AVEPESVVVTSGATEALYV   93 (381)
T ss_dssp             TCEECCCCSC----SSCCCHHHHHHHHHHTTT--SCSCCCTTCCHHHHHHHHHHH------TSCGGGEEEESSHHHHHHH
T ss_pred             CeEEecCCCC----CCCCCHHHHHHHHHHHHH--hcCCCCCCCCHHHHHHHHHhc------CCChhhEEEcCChHHHHHH
Confidence            3567777766    677899999999999875  457887778999999999998      5677899999999999999


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccC--CCCCccCChhhHHHhhccCceEEEEeCCCCCccccCC
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLL--PEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFS  166 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  166 (387)
                      ++.++.++||+|+++.|+|+++...++  ..|.+++.++++  + .++.+|+++|++++++++++|++++|+||||.++|
T Consensus        94 ~~~~~~~~gd~Vl~~~~~~~~~~~~~~--~~g~~~~~v~~~~~~-~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~  170 (381)
T 1v2d_A           94 LLQSLVGPGDEVVVLEPFFDVYLPDAF--LAGAKARLVRLDLTP-EGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFG  170 (381)
T ss_dssp             HHHHHCCTTCEEEEEESCCTTHHHHHH--HTTCEEEEEECEEET-TEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCC
T ss_pred             HHHHhCCCCCEEEEcCCCchhHHHHHH--HcCCEEEEEeCCCCC-ccCCcCHHHHHHhcCcCCEEEEECCCCCCCCCccC
Confidence            999999999999999999999999988  899999999875  2 24678999999999888999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          167 YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       167 ~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      .+++++|+++|+++|+++|+|++|+++.+ +....++..+ ..+.++++.|+||.++++|+|+||+++++        ++
T Consensus       171 ~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~-~~~~~~~~~s~sK~~~~~G~r~G~~~~~~--------~~  240 (381)
T 1v2d_A          171 ERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREF-APERTFTVGSAGKRLEATGYRVGWIVGPK--------EF  240 (381)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHH-CTTTEEEEEEHHHHTTCGGGCCEEEECCT--------TT
T ss_pred             HHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHh-cCCCEEEEeechhhcCCcccceEEEEeCH--------HH
Confidence            99999999999999999999999999877 4433444433 34578999999999999999999999965        57


Q ss_pred             HHHHHhhhh-ccCCcchHHHHHHHHHhhhcc-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccc
Q 038416          247 VDSIKGCLN-AASHPVTFIQAAVPRIVDETN-EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSM  324 (387)
Q Consensus       247 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~  324 (387)
                      ++.+..... ..++++++.+.++..+|+... +.++++..++++++++++.+.|++. ++.+. .+.+++++|++++.. 
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~-  317 (381)
T 1v2d_A          241 MPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLRVY-VPEGTYFLMAELPGW-  317 (381)
T ss_dssp             HHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEE-CCSBSSEEEEECTTC-
T ss_pred             HHHHHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC-CCEec-CCCcceEEEEecChH-
Confidence            777765543 356778888888888887532 4567888899999999999999986 77744 677788999888631 


Q ss_pred             ccCCCcHHHHHHHHHHhcCeEEEcCCccCC----CCeEEEEeeCChHhHHHHHHHHHHHHHHhhh
Q 038416          325 LEDIGDDLEFCLKLAKEESVIILPGRTVGM----KNWLRIAFAAEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       325 ~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~----~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                           +    +..+++++||.+.||..|..    .+++||+++.+++++++++++|++++++.+.
T Consensus       318 -----~----~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~~~~~i~~~~~~l~~~l~~~r~  373 (381)
T 1v2d_A          318 -----D----AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVVNSPRE  373 (381)
T ss_dssp             -----C----HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC-----
T ss_pred             -----h----HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHhhccc
Confidence                 2    45566788999999988864    6799999988999999999999999887765

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=5.7e-44  Score=336.32  Aligned_cols=354  Identities=19%  Similarity=0.248  Sum_probs=290.0

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCC--CCCCCCCCCCcHHHHHHHHHHHhhcCCCC-CCCCCEEEcCChHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTA--HYNCYSPTLGVPSARRGIADYLNRDLPYK-LSPEDVYLTLGCSQA   85 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~y~~~~~~~~lr~~ia~~~~~~~~~~-~~~~~i~~~~g~~~a   85 (387)
                      .+++++.|.|.  +...+++.+.+++.+++...  ....|++..+..++|+.+++++.++++.. +++++|++|+|++++
T Consensus        44 ~~idl~~g~~~--~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~a  121 (425)
T 1vp4_A           44 DAISFGGGVPD--PETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQA  121 (425)
T ss_dssp             TCEECCCCSCC--GGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHH
T ss_pred             CceeCCCCCCC--cccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHH
Confidence            45666666651  12346789999999988652  12478877789999999999997765655 678899999999999


Q ss_pred             HHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc--------CceEE-EEeC
Q 038416           86 IEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE--------NTVAI-VIIN  156 (387)
Q Consensus        86 ~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~v-~l~~  156 (387)
                      +..++.+++++||+|+++.|+|+++...++  ..|.+++.++++++   ++|+++|++++++        ++++| ++++
T Consensus       122 l~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~--~~g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~  196 (425)
T 1vp4_A          122 LDLIGKLFLDDESYCVLDDPAYLGAINAFR--QYLANFVVVPLEDD---GMDLNVLERKLSEFDKNGKIKQVKFIYVVSN  196 (425)
T ss_dssp             HHHHHHHHCCTTCEEEEEESCCHHHHHHHH--TTTCEEEEEEEETT---EECHHHHHHHHHHHHHTTCGGGEEEEEEECS
T ss_pred             HHHHHHHhCCCCCEEEEeCCCcHHHHHHHH--HcCCEEEEeccCCC---CCCHHHHHHHHHhhhhcccCCCceEEEECCC
Confidence            999999999999999999999999999999  99999999988542   4899999998875        67887 5789


Q ss_pred             CCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeC
Q 038416          157 PGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSD  236 (387)
Q Consensus       157 p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~  236 (387)
                      |+||||.++|.+++++|+++|+++|+++|+||+|+.+.+++....++..++..++++++.|+||.|+ +|+|+||+++++
T Consensus       197 ~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~  275 (425)
T 1vp4_A          197 FHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PGLRIGMVAGSK  275 (425)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GGGCEEEEECCH
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccc-cccceEEEeeCH
Confidence            9999999999999999999999999999999999998887765555655555567899999999998 999999999975


Q ss_pred             CCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHHHHHHHhhc-CC---CCCCCCCC
Q 038416          237 PNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDET-NEAFFAKIIGLLKETADICYERIKE-IP---CITCPVKP  310 (387)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~l~~-~~---~~~~~~~~  310 (387)
                              ++++.+..... .+.+++++.+.++..+|+.. .+.++++..++++++++.+.+.|++ +|   ++. +..|
T Consensus       276 --------~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~-~~~~  346 (425)
T 1vp4_A          276 --------EFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVK-WVKS  346 (425)
T ss_dssp             --------HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCE-ECCC
T ss_pred             --------HHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceE-EecC
Confidence                    67787776543 34567888999999888764 2567788889999999999999987 45   577 3368


Q ss_pred             CceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccC----CCCeEEEEeeC-ChHhHHHHHHHHHHHHHHhhh
Q 038416          311 QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG----MKNWLRIAFAA-EPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       311 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~----~~~~~Ri~~~~-~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      .+|+|+|++++..     .+..++...++++ ||.+.||..|.    ..+++||+++. +++++++++++|+++++++.+
T Consensus       347 ~~g~~~~~~~~~~-----~~~~~l~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~~~l~~l~~~l~~~~~  420 (425)
T 1vp4_A          347 EGGLFIWLTLPEG-----FDTWEMFEYAKRK-KVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLEYGK  420 (425)
T ss_dssp             SBSSEEEEECCTT-----CCTTTTHHHHHHH-TEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccEEEEEEcCCC-----CCHHHHHHHHHHC-CCEEECchhhcCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            8899999998641     1344677777655 99999998875    35799999976 789999999999999987654

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=6e-43  Score=327.75  Aligned_cols=350  Identities=24%  Similarity=0.357  Sum_probs=290.5

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      .+++++.|.+    +++.++.+.+++ +.+... ...|++..+..++|+.+++++...++.++++++|++|+|+++++..
T Consensus        44 ~~i~l~~~~~----~~~~~~~v~~a~-~~l~~~-~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~  117 (409)
T 2gb3_A           44 RIHHLNIGQP----DLKTPEVFFERI-YENKPE-VVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILF  117 (409)
T ss_dssp             EEEECSSCCC----CSCCCTHHHHHH-HHTCCS-SCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHH
T ss_pred             CEEeccCCCC----CCCCCHHHHHHH-HHHhcC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHH
Confidence            3566777766    667788999999 887653 3478877789999999999999888877888999999999999999


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      ++.+++++||+|+++.|+|+++...++  ..|.+++.+++++++++.+ +++|++++++++++|++++|+||||.++|.+
T Consensus       118 ~~~~~~~~gd~Vl~~~~~~~~~~~~~~--~~g~~~~~v~~~~~~~~~~-~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~  194 (409)
T 2gb3_A          118 SFAVIANPGDEILVLEPFYANYNAFAK--IAGVKLIPVTRRMEEGFAI-PQNLESFINERTKGIVLSNPCNPTGVVYGKD  194 (409)
T ss_dssp             HHHHHCCTTCEEEEEESCCTHHHHHHH--HHTCEEEEEECCGGGTSCC-CTTGGGGCCTTEEEEEEESSCTTTCCCCCHH
T ss_pred             HHHHhCCCCCEEEEcCCCchhHHHHHH--HcCCEEEEeccCCCCCCcc-HHHHHHhhCcCCeEEEECCCCCCCCCCcCHH
Confidence            999999999999999999999999988  8999999998865345555 8999999888899999999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD  248 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~  248 (387)
                      ++++|+++|+++|+++|+|++|+.+.+++.....+..+  .+++++++|+||.++++|+|+||+++++       +++++
T Consensus       195 ~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~--~~~~i~~~s~sK~~g~~G~r~G~~~~~~-------~~l~~  265 (409)
T 2gb3_A          195 EMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIE--SDKVVVIDSVSKKFSACGARVGCLITRN-------EELIS  265 (409)
T ss_dssp             HHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSC--CTTEEEEEESTTTTTCGGGCCEEEECSC-------HHHHH
T ss_pred             HHHHHHHHHHHcCCEEEEECcccccccCCCCCCccccC--CCCEEEEecchhccCCccceEEEEEECc-------HHHHH
Confidence            99999999999999999999999988765322222211  2467999999999999999999999864       14677


Q ss_pred             HHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccC
Q 038416          249 SIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLED  327 (387)
Q Consensus       249 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  327 (387)
                      .+..... .. +++++.+.++..+|+. .+.++++..+++.++++.+.+.|+++ ++.++..|.+++++|++++.     
T Consensus       266 ~l~~~~~~~~-~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-----  337 (409)
T 2gb3_A          266 HAMKLAQGRL-APPLLEQIGSVGLLNL-DDSFFDFVRETYRERVETVLKKLEEH-GLKRFTKPSGAFYITAELPV-----  337 (409)
T ss_dssp             HHHHHHHHSC-CCCHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCBCCCSBSSEEEEECSS-----
T ss_pred             HHHHHHhccC-CCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCeeEEEEEEeCC-----
Confidence            7766543 33 7788899988888865 36678888999999999999999988 77741468889999988861     


Q ss_pred             CCcHHHHHHHHHHh-----cCeEEEcCCccCC-----CCeEEEEeeCChHhHHHHHHHHHHHHHHhhh
Q 038416          328 IGDDLEFCLKLAKE-----ESVIILPGRTVGM-----KNWLRIAFAAEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       328 ~~~~~~~~~~ll~~-----~gi~v~~g~~~~~-----~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                       .+..++...++++     +||.+.||..|+.     .+++||+++.+++++++++++|+++++++++
T Consensus       338 -~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~  404 (409)
T 2gb3_A          338 -EDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKMFCS  404 (409)
T ss_dssp             -SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             -CCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHhhh
Confidence             2466777777666     5999999988753     5799999998999999999999999988754

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=100.00  E-value=3.3e-43  Score=324.39  Aligned_cols=333  Identities=19%  Similarity=0.253  Sum_probs=279.9

Q ss_pred             ccccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHH
Q 038416            6 GQETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQA   85 (387)
Q Consensus         6 g~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a   85 (387)
                      |.+.+++++.+.+    .+++++.+.+++.+.+..  ...|+. .+..++|+.+++++      ++++++|++|+|++++
T Consensus        30 ~~~~~i~l~~~~~----~~~~~~~v~~a~~~~~~~--~~~y~~-~~~~~lr~~la~~~------~~~~~~v~~~~g~t~a   96 (363)
T 3ffh_A           30 GLTKITKLSSNEN----PLGTSKKVAAIQANSSVE--TEIYPD-GWASSLRKEVADFY------QLEEEELIFTAGVDEL   96 (363)
T ss_dssp             TCSCCEECSSCSC----TTCCCHHHHHHHHTCBSC--CCBC-----CHHHHHHHHHHH------TCCGGGEEEESSHHHH
T ss_pred             CCCceEEccCCCC----CCCCCHHHHHHHHHHHHH--hhcCCC-cchHHHHHHHHHHh------CCChhhEEEeCCHHHH
Confidence            3345667777655    688999999999987753  346654 57899999999999      4678899999999999


Q ss_pred             HHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccC
Q 038416           86 IEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVF  165 (387)
Q Consensus        86 ~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~  165 (387)
                      +..++.+++++||+|+++.|+|.++...++  ..|.+++.+++++  ++.+|++++++++++++++|++++|+||||.++
T Consensus        97 ~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~--~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~  172 (363)
T 3ffh_A           97 IELLTRVLLDTTTNTVMATPTFVQYRQNAL--IEGAEVREIPLLQ--DGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYI  172 (363)
T ss_dssp             HHHHHHHHCSTTCEEEEEESSCHHHHHHHH--HHTCEEEEEECCT--TSCCCHHHHHHHCCTTEEEEEEESSCTTTCCCC
T ss_pred             HHHHHHHHccCCCEEEEcCCChHHHHHHHH--HcCCEEEEecCCC--CCCcCHHHHHHhcccCCCEEEEeCCCCCcCCCc
Confidence            999999999999999999999999999999  9999999999864  568999999999998999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchh
Q 038416          166 SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSG  245 (387)
Q Consensus       166 ~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~  245 (387)
                      |.+++.++++.|++ |+++|+|++|+++.+ +.....+......++++++.|+||.++++|+|+||+++++        +
T Consensus       173 ~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~--------~  242 (363)
T 3ffh_A          173 ELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADK--------E  242 (363)
T ss_dssp             CHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECH--------H
T ss_pred             CHHHHHHHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCH--------H
Confidence            99999999998887 999999999998877 5444444444556789999999999999999999999965        7


Q ss_pred             HHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccc
Q 038416          246 FVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML  325 (387)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~  325 (387)
                      +++.+..... .++++++.+.++..+++.  ..++++..++++++++.+.+.|++++++. + .+..++|+|++++.   
T Consensus       243 ~~~~l~~~~~-~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~-~~~~~~~~~~~~~~---  314 (363)
T 3ffh_A          243 IIRQLNIVRP-PFNTTSIGQKLAIEAIKD--QAFIGECRTSNANGIKQYEAFAKRFEKVK-L-YPANGNFVLIDLGI---  314 (363)
T ss_dssp             HHHHHHHTCC-SCCCBHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHCTTCE-E-CCCCSSEEEEECSS---
T ss_pred             HHHHHHHhCC-CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhhCCCce-E-CCCCCeEEEEECCC---
Confidence            8888877654 567889999999998874  47788899999999999999999966887 4 35557788988863   


Q ss_pred             cCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHH
Q 038416          326 EDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAF  379 (387)
Q Consensus       326 ~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~  379 (387)
                          +..++...+. ++||.+.+|..|+.++++||+++ ++++++++++.|+++
T Consensus       315 ----~~~~~~~~l~-~~gi~v~~g~~~~~~~~iRis~~-~~~~i~~~~~~l~~~  362 (363)
T 3ffh_A          315 ----EAGTIFSYLE-KNGYITRSGAALGFPTAVRITIG-KEEDNSAVIALLEKL  362 (363)
T ss_dssp             ----CHHHHHHHHH-HTTEECEETTTTTCTTEEEEECC-CHHHHHHHHHHHHHH
T ss_pred             ----CHHHHHHHHH-HCCeEEEeCccCCCCCeEEEECC-CHHHHHHHHHHHHHh
Confidence                4566767664 56999999999988899999998 889999999998875

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=100.00  E-value=1.6e-43  Score=334.67  Aligned_cols=350  Identities=18%  Similarity=0.185  Sum_probs=291.9

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      .+++++.|.+    ++++++.+.+++.+.+......+|++..+..++|+.+++++++.++..+++++|++|+|+++++..
T Consensus        45 ~~i~l~~~~~----~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~  120 (437)
T 3g0t_A           45 KFCRMEMGVP----GLPAPQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFV  120 (437)
T ss_dssp             CCEECCCCSC----CSCCCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHH
T ss_pred             CEEeccCcCC----CCCCCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHH
Confidence            4677778776    678999999999999875443578887888999999999999888877889999999999999999


Q ss_pred             HHHhhc--CCCC--eEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhh-ccCceEEEEeCCCCCccc
Q 038416           89 SLSVLA--RPGA--NILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALA-DENTVAIVIINPGNPCGN  163 (387)
Q Consensus        89 ~~~~l~--~~g~--~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~l~~p~nptG~  163 (387)
                      ++.+++  ++||  +|+++.|+|.++...++  ..|.+++.++++ .+++.+|+++|++++ ++++++|++++|+||||.
T Consensus       121 ~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~--~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~  197 (437)
T 3g0t_A          121 SFLVANRTHKNREYGTLFIDPGFNLNKLQCR--ILGQKFESFDLF-EYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQ  197 (437)
T ss_dssp             HHHHHTTSCTTCSCCEEEEESCCHHHHHHHH--HHTCCCEEEEGG-GGCTTHHHHHHHHHHTTTCCCEEEEESSCTTTCC
T ss_pred             HHHHHhcCCCCCccEEEEeCCCcHhHHHHHH--HcCCEEEEEeec-CCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCC
Confidence            999998  9999  99999999999999999  999999999986 456678999999999 778999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCc----cc-cccCC-CccEEEEecCcccccccccceEEEEeeCC
Q 038416          164 VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYV----PM-GVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDP  237 (387)
Q Consensus       164 ~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~----~~-~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~  237 (387)
                      ++|.+++++|+++|+++|+++|+|++|+.+.+.+....    ++ ..+.. .++++++.|+||.++++|+|+||+++++ 
T Consensus       198 ~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-  276 (437)
T 3g0t_A          198 CMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMISG-  276 (437)
T ss_dssp             CCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEEEECH-
T ss_pred             cCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCccceeEEEEECH-
Confidence            99999999999999999999999999998877632211    11 33332 5678999999999999999999999975 


Q ss_pred             CCcccchhHHH-H-----------------HHhhhh-ccCCcchHHHHHHHHHhhhccHHH---HHHHHHHHHHHHHHHH
Q 038416          238 NGILQNSGFVD-S-----------------IKGCLN-AASHPVTFIQAAVPRIVDETNEAF---FAKIIGLLKETADICY  295 (387)
Q Consensus       238 ~~~~~~~~~~~-~-----------------~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~  295 (387)
                             ++++ .                 +..... ...+++++.+.++..+++.. +.+   +++..++++++++.+.
T Consensus       277 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~l~  348 (437)
T 3g0t_A          277 -------KLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKAC-NDGEYNFRDSVIEYGRKARIMK  348 (437)
T ss_dssp             -------HHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHH-HTTSCCHHHHHHHHHHHHHHHH
T ss_pred             -------HHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCc-HhHHHHHHHHHHHHHHHHHHHH
Confidence                   6666 5                 555432 45678889999999888752 223   7888999999999999


Q ss_pred             HHhhcCCCCCCCC-----CC-CceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCC--CeEEEEeeC-Ch
Q 038416          296 ERIKEIPCITCPV-----KP-QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMK--NWLRIAFAA-EP  366 (387)
Q Consensus       296 ~~l~~~~~~~~~~-----~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~--~~~Ri~~~~-~~  366 (387)
                      +.|+++ ++.+..     .| .+++++|+.++.      .+..++...+. ++||.+.||..|+..  +++||+++. ++
T Consensus       349 ~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~L~-~~gi~v~~~~~~~~~~~~~iRis~~~~~~  420 (437)
T 3g0t_A          349 KMFLDN-GFNIVYDKDGNEPLADGFYFTVGYKG------MDSSKLIEKFV-RYGMCAITLKTTGSKRNEAMRICTSLLPE  420 (437)
T ss_dssp             HHHHTT-TEEESSCEETTEECCSSSEEEEEETT------CCHHHHHHHHH-HTTEECEESTTTTCCCTTCEEEECSSSCG
T ss_pred             HHHHHc-CCEEeccccCCCCCceeEEEEEecCC------CCHHHHHHHHH-HcCeEEeeccccCCCCCCEEEEEEecCCH
Confidence            999998 777330     24 789999998862      25667777775 459999999887653  789999975 89


Q ss_pred             HhHHHHHHHHHHHHHH
Q 038416          367 ATLEDGLERIKAFCQR  382 (387)
Q Consensus       367 e~~~~~~~~l~~~~~~  382 (387)
                      +++++++++|++++++
T Consensus       421 e~i~~~~~~l~~~~~~  436 (437)
T 3g0t_A          421 SQFPDLEKRLQMLNAE  436 (437)
T ss_dssp             GGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999988764

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=100.00  E-value=1.6e-43  Score=328.91  Aligned_cols=346  Identities=13%  Similarity=0.093  Sum_probs=270.8

Q ss_pred             ccccCCCCCCC-CCCCCCCCcHHHHHHHHHHh-cCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCC--EEEcCChH
Q 038416            8 ETRHSPWPRRP-LGVSLLSDSTVAEDAVVDAL-RTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPED--VYLTLGCS   83 (387)
Q Consensus         8 ~~~~~~~~~~~-~~~~~~~~~~~v~~a~~~~~-~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~--i~~~~g~~   83 (387)
                      +.+++++.|.+ ..++++++++.+.++.. .. ......+|++..|.++||+++++|+.+..+..+++++  +++|.|++
T Consensus        29 ~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~  107 (405)
T 3k7y_A           29 EEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGT  107 (405)
T ss_dssp             SSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHH
T ss_pred             cCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchH
Confidence            45788989974 22345678999999987 54 3334568999999999999999999776655556665  58999999


Q ss_pred             HHHHHHHHhhcC--CCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc--CceEEEEeCC-C
Q 038416           84 QAIEISLSVLAR--PGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE--NTVAIVIINP-G  158 (387)
Q Consensus        84 ~a~~~~~~~l~~--~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~v~l~~p-~  158 (387)
                      +|+..++.++..  + |+|++++|+|.+|...++  ..|.+++.+++..++++++|++++++++++  .+++++++.| |
T Consensus       108 ~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~  184 (405)
T 3k7y_A          108 GAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIE--SRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCY  184 (405)
T ss_dssp             HHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHH--TTTCEEEEECCEETTTTEECHHHHHHHHHHSCSSCEEEECCSSC
T ss_pred             HHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHH--HcCCeEEEEeccccccCCcCHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            999999999987  8 999999999999999999  999999999985455689999999998864  5677777665 8


Q ss_pred             CCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCC--Ccccccc-CCCccEEEEecCcccccccccceEEEEee
Q 038416          159 NPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTP--YVPMGVF-GSIVPVITLGSISKRWIVPGWRLGWLVTS  235 (387)
Q Consensus       159 nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~--~~~~~~~-~~~~~~~~i~s~sK~~~~~g~r~G~i~~~  235 (387)
                      ||||.+++.+++++|+++|+++++++|+||+|.++.+++..  ..++..+ ...+++++++||||.|+++|+|+||+++.
T Consensus       185 NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~~  264 (405)
T 3k7y_A          185 NPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGALHIV  264 (405)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTEEEEEEE
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCccccceEEEEE
Confidence            99999999999999999999999999999999998875421  1122222 22368999999999999999999999753


Q ss_pred             CCCCcccchhHHHHHH----hhh-hccCCcchHHHHHHHHHhhhcc-----HHHHHHHHHHHHHHHHHHHHHhh----cC
Q 038416          236 DPNGILQNSGFVDSIK----GCL-NAASHPVTFIQAAVPRIVDETN-----EAFFAKIIGLLKETADICYERIK----EI  301 (387)
Q Consensus       236 ~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~l~----~~  301 (387)
                      .+     ++++++.+.    ... .....++.++|.++..++.+..     .+.+.+..++++++++.+.+.|+    ++
T Consensus       265 ~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~  339 (405)
T 3k7y_A          265 CK-----NQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKY  339 (405)
T ss_dssp             CS-----SHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred             eC-----CHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            21     124554443    221 2334566788888888887531     23456667789999999999998    76


Q ss_pred             C---CCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee-CChHhHHHHHHHHH
Q 038416          302 P---CITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA-AEPATLEDGLERIK  377 (387)
Q Consensus       302 ~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~-~~~e~~~~~~~~l~  377 (387)
                      +   +|. +..|++|+|+|+.++.          +++..| +++||.+.||.        |||++ .++++++.++++|+
T Consensus       340 g~~~~~~-~~~p~gg~f~~~~l~~----------~~~~~L-~~~gV~v~p~~--------Ris~a~~~~~~i~~~~~~i~  399 (405)
T 3k7y_A          340 NLNYDWN-VYKKQRGLFSFVPLLA----------KIAEHL-KTHHIYIINNG--------RINVSGITKNNVDYIADKIC  399 (405)
T ss_dssp             TCCCCGG-GGSSCCSSEEECGGGG----------GGTTTT-TTTTEECCTTS--------EEEGGGCCTTHHHHHHHHHH
T ss_pred             CCCCCCc-cccCCceEEEecCCCH----------HHHHHH-HHCCEeecCCC--------eEEEeccCHHHHHHHHHHHH
Confidence            3   266 4478999999987642          344556 88899999973        99995 68999999999999


Q ss_pred             HHHHH
Q 038416          378 AFCQR  382 (387)
Q Consensus       378 ~~~~~  382 (387)
                      ++++.
T Consensus       400 ~~~~~  404 (405)
T 3k7y_A          400 LSLSQ  404 (405)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            98764

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=100.00  E-value=6.5e-43  Score=327.38  Aligned_cols=354  Identities=21%  Similarity=0.335  Sum_probs=289.3

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCC--CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTA--HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI   86 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~   86 (387)
                      .+++++.|.+.  +...+++.+.+++.+++...  ... |++..+..++|+.+++++.+.+|.++++++|++|+|+++++
T Consensus        35 ~~idl~~g~~~--~~~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~  111 (407)
T 2zc0_A           35 KLISLAAGDPD--PELIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGAL  111 (407)
T ss_dssp             CCEECCSCCCC--TTTSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHH
T ss_pred             ceEeCCCCCCC--chhCCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHH
Confidence            35566666651  12336789999999988753  234 87777899999999999987777667889999999999999


Q ss_pred             HHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc----c--CceEE-EEeCCCC
Q 038416           87 EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD----E--NTVAI-VIINPGN  159 (387)
Q Consensus        87 ~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~----~--~~~~v-~l~~p~n  159 (387)
                      ..++.+++++||+|+++.|+|+++...+.  ..|.+++.++++++   ++|+++|+++++    +  ++++| ++++|+|
T Consensus       112 ~~~~~~~~~~gd~vl~~~p~~~~~~~~~~--~~g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~n  186 (407)
T 2zc0_A          112 DLLGRVLIDPGDVVITENPSYINTLLAFE--QLGAKIEGVPVDND---GMRVDLLEEKIKELKAKGQKVKLIYTIPTGQN  186 (407)
T ss_dssp             HHHHHHHCCTTCEEEEEESCCHHHHHHHH--TTTCEEEEEEEETT---EECHHHHHHHHHHHHHTTCCEEEEEECCSSCT
T ss_pred             HHHHHHhcCCCCEEEEeCCChHHHHHHHH--HcCCEEEEcccCCC---CCCHHHHHHHHHhhhcccCCceEEEECCCCCC
Confidence            99999999999999999999999999999  99999999987542   489999999887    5  67777 5778999


Q ss_pred             CccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCC
Q 038416          160 PCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNG  239 (387)
Q Consensus       160 ptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~  239 (387)
                      |||.++|.+++++|+++|+++|+++|+|++|+.+.+.+....++..++..+++++++|+||.++ +|+|+||+++++   
T Consensus       187 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~---  262 (407)
T 2zc0_A          187 PMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLG-TGFRIGWIIAEG---  262 (407)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTC-TTSCCEEEECCH---
T ss_pred             CCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccC-CCcceEEEecCH---
Confidence            9999999999999999999999999999999998887665555666655567899999999998 999999999865   


Q ss_pred             cccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhcc-H-HHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCCceEE
Q 038416          240 ILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETN-E-AFFAKIIGLLKETADICYERIKE-IPCITCPVKPQGAMF  315 (387)
Q Consensus       240 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~g~~  315 (387)
                           ++++.+..... ...+++++.+.++..+++... + .++++..++++++++.+.+.|++ +|++.+. .|.++++
T Consensus       263 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~  336 (407)
T 2zc0_A          263 -----EILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFT-KPIAGMF  336 (407)
T ss_dssp             -----HHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBC-CCSBSSE
T ss_pred             -----HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEe-cCCCcEE
Confidence                 67887776543 345668888998888887642 3 56777888889999999999987 5777743 6788899


Q ss_pred             EEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccC----CCCeEEEEeeC-ChHhHHHHHHHHHHHHHHhhh
Q 038416          316 VMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG----MKNWLRIAFAA-EPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~----~~~~~Ri~~~~-~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      +|++++..     .+..++...+++++||.+.||..|.    ..+++||+++. +++++++++++|+++++++.+
T Consensus       337 ~~~~~~~~-----~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~~  406 (407)
T 2zc0_A          337 VMFFLPEG-----ADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKLAKLYKEKFG  406 (407)
T ss_dssp             EEEECSTT-----CCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTHHHHHHHHHHHHHHHHC-
T ss_pred             EEEEcCCC-----CCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            99988641     1456777777666699999998875    35799999976 789999999999999987654

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=100.00  E-value=6.7e-44  Score=336.43  Aligned_cols=348  Identities=16%  Similarity=0.212  Sum_probs=282.7

Q ss_pred             cccCCCCCCCCCCCCCCCcHHH--HHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCC---EEEcCChH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVA--EDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPED---VYLTLGCS   83 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v--~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~---i~~~~g~~   83 (387)
                      .+++++.|.+.   +++.++.+  .+++.+.+......+|++..|..++|+.+++++.+.. .++++++   |++|+|++
T Consensus        48 ~~i~l~~g~~~---~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~-~~~~~~~~~~i~~t~g~~  123 (430)
T 2x5f_A           48 TTYNATIGMAT---NKDGKMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDN-PELSIDNMSRPIVTNALT  123 (430)
T ss_dssp             CSEECCCSSCE---ETTEECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHC-TTCCGGGBCCCEEESHHH
T ss_pred             CcEEeeeeecc---CCCCchhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccC-cccCCCccceEEEcCCch
Confidence            45677777552   34445555  6666665543234588887789999999999997764 5667788   99999999


Q ss_pred             HHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccC-CCceeeeeccCCCCCccCChhhHHHhhcc---CceEEEEeCCCC
Q 038416           84 QAIEISLSVLARPGANILIPRPGYPLYEIHAAGSN-NNLEARHYDLLPEKRWEVDLDGVEALADE---NTVAIVIINPGN  159 (387)
Q Consensus        84 ~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~v~l~~p~n  159 (387)
                      +++..++.+++++||+|+++.|+|+++...++  . .|.+++.++++.++ +.+|++++++++++   +++++++++|+|
T Consensus       124 ~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~--~~~g~~~~~~~~~~~~-~~~d~~~l~~~l~~~~~~~~~v~i~~p~n  200 (430)
T 2x5f_A          124 HGLSLVGDLFVNQDDTILLPEHNWGNYKLVFN--TRNGANLQTYPIFDKD-GHYTTDSLVEALQSYNKDKVIMILNYPNN  200 (430)
T ss_dssp             HHHHHHHHHHCCTTCEEEEESSCCTHHHHHHT--TTTCCEEEEECCBCTT-SCBCSHHHHHHHHHCCSSEEEEEECSSCT
T ss_pred             HHHHHHHHHHhCCCCEEEEcCCcCccHHHHHH--HhcCCeEEEEeccCcc-CCcCHHHHHHHHHhcCCCCEEEEEcCCCC
Confidence            99999999999999999999999999999999  8 99999999886533 67899999999876   789999999999


Q ss_pred             CccccCCHHHHHHHHHHHHh-----cCcEEeecccccccccCCCCCcccc-ccCC-Ccc---EEEEecCcccccccccce
Q 038416          160 PCGNVFSYQHLQKIARTARN-----LGIIVIADEVYNHLAFGSTPYVPMG-VFGS-IVP---VITLGSISKRWIVPGWRL  229 (387)
Q Consensus       160 ptG~~~~~~~~~~l~~~~~~-----~~~~li~D~~~~~~~~~~~~~~~~~-~~~~-~~~---~~~i~s~sK~~~~~g~r~  229 (387)
                      |||.++|.+++++|+++|++     +|+++|+|++|+++.+++.+..++. .+.. .++   +++++|+||.|+++|+|+
T Consensus       201 ptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ri  280 (430)
T 2x5f_A          201 PTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRV  280 (430)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCC
T ss_pred             CCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCe
Confidence            99999999999999999999     9999999999999888765444443 4432 456   899999999999999999


Q ss_pred             EEEEe---eCCCCcccchhHHHHHHhhhh-----ccCCcchHHHHHHHHHhh-hcc-HHHHHHHHHHHHHHHHHHHHHhh
Q 038416          230 GWLVT---SDPNGILQNSGFVDSIKGCLN-----AASHPVTFIQAAVPRIVD-ETN-EAFFAKIIGLLKETADICYERIK  299 (387)
Q Consensus       230 G~i~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~-~~~-~~~~~~~~~~~~~~~~~~~~~l~  299 (387)
                      ||+++   ++        ++++.+.....     ..++++++.+.++..+|+ ... ...+++..++++++++.+.+.|+
T Consensus       281 G~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  352 (430)
T 2x5f_A          281 GFMTFGTSDQ--------TTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVY  352 (430)
T ss_dssp             EEEEEBCCCH--------HHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEecCCH--------HHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999   54        67777765532     356788999999999987 631 22334488889999999999998


Q ss_pred             ----cCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee-CChHhHHHHHH
Q 038416          300 ----EIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA-AEPATLEDGLE  374 (387)
Q Consensus       300 ----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~-~~~e~~~~~~~  374 (387)
                          ++ ++. +..+.+|+|+|+.++.      .+..++...+++++||.+.||    ..+++||+++ .++++++++++
T Consensus       353 ~~~~~~-g~~-~~~~~~g~~~~~~~~~------~~~~~~~~~l~~~~gi~v~~g----~~~~iRis~~~~~~e~i~~~~~  420 (430)
T 2x5f_A          353 ADQYHS-HWQ-AYDFNSGYFMAIKVHD------VDPEALRKHLIDKYSIGVIAL----NATDIRIAFSCVEKDDIPHVFD  420 (430)
T ss_dssp             CGGGTT-TEE-ECCCCBSSEEEEEESS------SCHHHHHHHHHHHHCEECEEC----SSSEEEEEGGGSCGGGHHHHHH
T ss_pred             hhCCCC-Cce-eeCCCceEEEEeCCCC------CCHHHHHHHHHHhCCEEEecC----CCCeEEEEEecCCHHHHHHHHH
Confidence                55 676 4467888899998861      156678787766579999998    3679999997 78899999999


Q ss_pred             HHHHHHHHh
Q 038416          375 RIKAFCQRH  383 (387)
Q Consensus       375 ~l~~~~~~~  383 (387)
                      +|+++++++
T Consensus       421 ~l~~~l~~~  429 (430)
T 2x5f_A          421 SIAKAIDDL  429 (430)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999998875

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=100.00  E-value=9.2e-43  Score=328.49  Aligned_cols=346  Identities=18%  Similarity=0.331  Sum_probs=276.8

Q ss_pred             CcHHHHHHHHHHhcC----------CCCCCCCCCCCcHHHHHHHHHHHhhcCCCC--CCCCCEEEcCChHHHHHHHHHhh
Q 038416           26 DSTVAEDAVVDALRT----------AHYNCYSPTLGVPSARRGIADYLNRDLPYK--LSPEDVYLTLGCSQAIEISLSVL   93 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~----------~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~--~~~~~i~~~~g~~~a~~~~~~~l   93 (387)
                      .++.+.+++.+....          .....|++..|..++|+.+++++++.++..  +++++|++++|+++++..+++++
T Consensus        49 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~  128 (428)
T 1iay_A           49 CLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCL  128 (428)
T ss_dssp             SHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHh
Confidence            456888888754310          113478877789999999999998877754  67899999999999999999999


Q ss_pred             cCCCCeEEEcCCCCcchHHHh-hccCCCceeeeeccCCCCCccCChhhHHHhhcc------CceEEEEeCCCCCccccCC
Q 038416           94 ARPGANILIPRPGYPLYEIHA-AGSNNNLEARHYDLLPEKRWEVDLDGVEALADE------NTVAIVIINPGNPCGNVFS  166 (387)
Q Consensus        94 ~~~g~~vl~~~p~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~~  166 (387)
                      +++||+|+++.|+|+++...+ .  ..|.+++.++++.++++.+|++++++++++      ++++|++++|+||||.++|
T Consensus       129 ~~~gd~Vl~~~p~y~~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~  206 (428)
T 1iay_A          129 ADPGDAFLVPSPYYPAFNRDLRW--RTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLD  206 (428)
T ss_dssp             CCTTCEEEEESSCCTTHHHHTTT--TTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCC
T ss_pred             CCCCCeEEEccCCCcchHHHHHH--hcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCC
Confidence            999999999999999987643 4  579999999886555678899999998863      6888999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC--------CccEEEEecCcccccccccceEEEEeeCCC
Q 038416          167 YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS--------IVPVITLGSISKRWIVPGWRLGWLVTSDPN  238 (387)
Q Consensus       167 ~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~  238 (387)
                      .+++++|+++|+++|+++|+||+|+++.+.+..+.++..+..        .++++++.|+||.|+++|+|+||+++++  
T Consensus       207 ~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~--  284 (428)
T 1iay_A          207 KDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFN--  284 (428)
T ss_dssp             HHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESC--
T ss_pred             HHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCCceEEEEEeCC--
Confidence            999999999999999999999999998876654444433332        3678999999999999999999999853  


Q ss_pred             CcccchhHHHHHHhhhhccCCcchHHHHHHHHHhhhcc--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEE
Q 038416          239 GILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETN--EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFV  316 (387)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~  316 (387)
                           +++++.+..... .++.+++++.++..+++...  +.++++..+++.++++.+.+.|+++ ++. +..+.+|+|+
T Consensus       285 -----~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~g~~~  356 (428)
T 1iay_A          285 -----DDVVNCARKMSS-FGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIK-CLKNNAGLFC  356 (428)
T ss_dssp             -----HHHHHHHHHHHT-TSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCC-BCCCSSSSEE
T ss_pred             -----HHHHHHHHHHHh-cccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCc-ccCCCeeEEE
Confidence                 257777765543 35678889999998888632  3467888899999999999999988 777 4356689999


Q ss_pred             EEecCccccc-CCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEee-CChHhHHHHHHHHHHHHHHh
Q 038416          317 MVKLNVSMLE-DIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFA-AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       317 ~~~~~~~~~~-~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~-~~~e~~~~~~~~l~~~~~~~  383 (387)
                      |++++..... ...+..++...+++++||.+.+|..|+.  ++++||+++ .+++++++++++|++++++.
T Consensus       357 ~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~  427 (428)
T 1iay_A          357 WMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGVE  427 (428)
T ss_dssp             EEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHHHHHHHHHHHHHHHTT
T ss_pred             EEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHhcc
Confidence            9988642100 0012345667776667999999988765  579999997 78999999999999988754

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=100.00  E-value=6.8e-43  Score=321.18  Aligned_cols=334  Identities=18%  Similarity=0.240  Sum_probs=282.1

Q ss_pred             cccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHH
Q 038416            7 QETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI   86 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~   86 (387)
                      .+.+++++.+.+    .+++++.+.+++.+.+..  ...|+. .+..++|+.+++++      ++++++|++|+|+++++
T Consensus        15 ~~~~i~l~~~~~----~~~~~~~v~~a~~~~~~~--~~~y~~-~~~~~l~~~la~~~------~~~~~~i~~~~g~~~a~   81 (354)
T 3ly1_A           15 TDNPIRINFNEN----PLGMSPKAQAAARDAVVK--ANRYAK-NEILMLGNKLAAHH------QVEAPSILLTAGSSEGI   81 (354)
T ss_dssp             SSSCEECSSCCC----SSCCCHHHHHHHHHTGGG--TTSCCH-HHHHHHHHHHHHHT------TSCGGGEEEESHHHHHH
T ss_pred             CCceEEccCCCC----CCCCCHHHHHHHHHHHhh--CcCCCC-CchHHHHHHHHHHh------CCChHHEEEeCChHHHH
Confidence            345666767654    788999999999998875  456754 47789999999998      46788999999999999


Q ss_pred             HHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc--cCceEEEEeCCCCCcccc
Q 038416           87 EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD--ENTVAIVIINPGNPCGNV  164 (387)
Q Consensus        87 ~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~v~l~~p~nptG~~  164 (387)
                      ..++.+++++||+|+++.|+|.++...++  ..|.+++.+++++  ++.+|+++++++++  +++++|++++|+||||.+
T Consensus        82 ~~~~~~l~~~gd~vl~~~~~~~~~~~~~~--~~g~~~~~~~~~~--~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~  157 (354)
T 3ly1_A           82 RAAIEAYASLEAQLVIPELTYGDGEHFAK--IAGMKVTKVKMLD--NWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTI  157 (354)
T ss_dssp             HHHHHHHCCTTCEEEEESSSCTHHHHHHH--HTTCEEEEECCCT--TSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCC
T ss_pred             HHHHHHHhCCCCeEEECCCCchHHHHHHH--HcCCEEEEecCCC--CCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCC
Confidence            99999999999999999999999999999  9999999998853  47899999999998  789999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCC-ccEEEEecCcccccccccceEEEEeeCCCCcccc
Q 038416          165 FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSI-VPVITLGSISKRWIVPGWRLGWLVTSDPNGILQN  243 (387)
Q Consensus       165 ~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~  243 (387)
                      +|.+++++|+++| ++|+++|+|++|+.+.+.+.....+...... +++++++|+||.++++|+|+||+++++       
T Consensus       158 ~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~-------  229 (354)
T 3ly1_A          158 TPADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHP-------  229 (354)
T ss_dssp             CCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECCH-------
T ss_pred             cCHHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecCH-------
Confidence            9999999999999 8999999999999988776544444434444 678999999999999999999999865       


Q ss_pred             hhHHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcc
Q 038416          244 SGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVS  323 (387)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~  323 (387)
                       ++++.+...... ++++++.+.++..+++.  ..++++..++++++++.+.+.|+++ ++. + .+..|+|+|+.++. 
T Consensus       230 -~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~-~~~-~-~~~~~~~~~~~~~~-  301 (354)
T 3ly1_A          230 -TVIALMGRYVAG-EKINFSGVDAALASMND--SAFITYSKKSNDVSRQILLKALEDL-KLP-Y-LPSEGNFVFHQLVV-  301 (354)
T ss_dssp             -HHHHHHGGGTTC-SCCCHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHHHHHH-TCC-B-CCCCSSEEEEECSS-
T ss_pred             -HHHHHHHHhcCC-CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHC-CCe-E-CCCCceEEEEECCC-
Confidence             788888776553 68889999999998885  3778889999999999999999988 677 3 35567788988863 


Q ss_pred             cccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHH
Q 038416          324 MLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       324 ~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~  382 (387)
                            +..++...+ .++||.+. |..++.++++||+++ ++++++++++.|++++++
T Consensus       302 ------~~~~~~~~l-~~~gi~v~-g~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l~~  351 (354)
T 3ly1_A          302 ------PLKDYQTHM-ADAGVLIG-RAFPPADNWCRISLG-TPQEMQWVADTMREFRKK  351 (354)
T ss_dssp             ------CHHHHHHHH-HHTTEECC-CCCTTCTTEEEEECC-CHHHHHHHHHHHHHHHHT
T ss_pred             ------CHHHHHHHH-HHCCEEEe-ecCCCCCCEEEEEcC-CHHHHHHHHHHHHHHHHh
Confidence                  355676666 46799998 776667899999987 688999999999998875

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=100.00  E-value=4.6e-43  Score=323.66  Aligned_cols=332  Identities=16%  Similarity=0.191  Sum_probs=278.1

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      +.+++++.+.+    .+++++.+.+++.+.+..  ...|+...+ .++|+.+++++      ++++++|++|+|+++++.
T Consensus        30 ~~~i~l~~~~~----~~~~~~~v~~a~~~~~~~--~~~y~~~~~-~~lr~~la~~~------~~~~~~v~~~~g~~~a~~   96 (365)
T 3get_A           30 KEVIKLASNEN----PFGTPPKAIECLRQNANK--AHLYPDDSM-IELKSTLAQKY------KVQNENIIIGAGSDQVIE   96 (365)
T ss_dssp             SCCEECSSCCC----TTCSCHHHHHHHHHHGGG--TTSCCCTTC-HHHHHHHHHHH------TCCGGGEEEESSHHHHHH
T ss_pred             CceEEecCCCC----CCCCCHHHHHHHHHHHHh--hccCCCCCh-HHHHHHHHHHh------CCCcceEEECCCHHHHHH
Confidence            45667777655    688999999999999874  457877655 89999999999      457889999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      .++.+++++||+|+++.|+|.++...++  ..|.+++.+++ ..+++ +|++++++++++++++|++++|+||||.++|.
T Consensus        97 ~~~~~l~~~gd~vl~~~~~~~~~~~~~~--~~g~~~~~v~~-~~~~~-~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~  172 (365)
T 3get_A           97 FAIHSKLNSKNAFLQAGVTFAMYEIYAK--QCGAKCYKTQS-ITHNL-DEFKKLYETHKDEIKLIFLCLPNNPLGECLDA  172 (365)
T ss_dssp             HHHHHHCCTTCEEEECSSCCTHHHHHHH--HHTCEEEECSS-SSCCH-HHHHHHHHHTTTTEEEEEEESSCTTTCCCCCH
T ss_pred             HHHHHHhCCCCEEEEeCCChHHHHHHHH--HcCCEEEEEec-CCCCC-CCHHHHHHHhCCCCCEEEEcCCCCCCCCCcCH
Confidence            9999999999999999999999999999  89999999987 34567 99999999999899999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEeeccccccccc--CCCC-CccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccch
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAF--GSTP-YVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNS  244 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~--~~~~-~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~  244 (387)
                      +++++++++| ++|+++|+|++|+.+.+  .+.. ...+...+..+++++++|+||.++++|+|+||+++++        
T Consensus       173 ~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~--------  243 (365)
T 3get_A          173 SEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIANA--------  243 (365)
T ss_dssp             HHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEECH--------
T ss_pred             HHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcCH--------
Confidence            9999999999 57999999999998875  3322 2223333344678999999999999999999999965        


Q ss_pred             hHHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccc
Q 038416          245 GFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSM  324 (387)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~  324 (387)
                      ++++.+..... .++++++.+.++..+++.  ..++++..++++++++.+.+.|+++ ++. + .+..+.|+|++++.. 
T Consensus       244 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~-g~~-~-~~~~~~~~~~~~~~~-  316 (365)
T 3get_A          244 NIISAFYKLRA-PFNVSNLALKAAVAAMDD--DEFTEKTLENNFSQMELYKEFAKKH-NIK-I-IDSYTNFITYFFDEK-  316 (365)
T ss_dssp             HHHHHHHHHSC-TTCSCHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHHHHHT-TCE-E-CCCSSSEEEEECSSS-
T ss_pred             HHHHHHHHhcC-CCCcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhC-CCE-E-CCCCCeEEEEECCCC-
Confidence            78888877654 356888999999999885  4778899999999999999999998 777 4 345566789888641 


Q ss_pred             ccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHH
Q 038416          325 LEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFC  380 (387)
Q Consensus       325 ~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~  380 (387)
                           +..++...+ .++||.+.+|..|+ ++++||+++ ++++++++++.|++++
T Consensus       317 -----~~~~~~~~l-~~~gi~v~~g~~~~-~~~iRis~~-~~~~i~~l~~~l~~~l  364 (365)
T 3get_A          317 -----NSTDLSEKL-LKKGIIIRNLKSYG-LNAIRITIG-TSYENEKFFTEFDKIL  364 (365)
T ss_dssp             -----CHHHHHHHH-HTTTEECEECGGGT-CSEEEEECC-CHHHHHHHHHHHHHHH
T ss_pred             -----CHHHHHHHH-HHCCEEEEECccCC-CCEEEEEcC-CHHHHHHHHHHHHHHh
Confidence                 455676666 45699999999888 899999998 7899999999998875

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=100.00  E-value=4.7e-43  Score=324.80  Aligned_cols=326  Identities=24%  Similarity=0.388  Sum_probs=275.2

Q ss_pred             HHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHH
Q 038416           33 AVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEI  112 (387)
Q Consensus        33 a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~  112 (387)
                      ++.+.+.... ..|++..+..++|+.+++++.     .+++++|++|+|+++|+..++.+++++||+|+++.|+|+++..
T Consensus        47 ~~~~~~~~~~-~~y~~~~g~~~l~~~la~~~~-----~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~  120 (375)
T 3op7_A           47 DFYKKLQGTK-LNYGWIEGSPAFKKSVSQLYT-----GVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYD  120 (375)
T ss_dssp             HHHHHHHTSC-CSSCCTTCCHHHHHHHHTTSS-----SCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHH
T ss_pred             HHHHHHhcCC-cCCCCCCChHHHHHHHHHHhc-----cCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHH
Confidence            4445554443 478887899999999999873     3577899999999999999999999999999999999999999


Q ss_pred             HhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccc
Q 038416          113 HAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNH  192 (387)
Q Consensus       113 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~  192 (387)
                      .+.  ..|.+++.++++.++++.+|++++++++++++++|++++|+||||.++|.+++++|+++|++||+++|+|++|+.
T Consensus       121 ~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~  198 (375)
T 3op7_A          121 IPK--SLGAEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRS  198 (375)
T ss_dssp             HHH--HTTCEEEEEEEEGGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCC
T ss_pred             HHH--HcCCEEEEEeccccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccc
Confidence            999  999999999987666778899999999998999999999999999999999999999999999999999999998


Q ss_pred             cccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHH
Q 038416          193 LAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRI  271 (387)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  271 (387)
                      +.+.  +...+..  ..+++++++|+||.++++|+|+||+++++        ++++.++.... ...+++++.+.++..+
T Consensus       199 ~~~~--~~~~~~~--~~~~~i~~~s~sK~~~~~G~r~G~v~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (375)
T 3op7_A          199 FSEL--DVPSIIE--VYDKGIAVNSLSKTYSLPGIRIGWVAANH--------QVTDILRDYRDYTMICAGVFDDLVAQLA  266 (375)
T ss_dssp             CSSS--CCCCHHH--HCTTEEEEEESSSSSSCGGGCCEEEECCH--------HHHHHHTTTGGGTTSCCCHHHHHHHHHH
T ss_pred             cccc--CCCchhh--hcCCEEEEeEChhhcCCcccceEEEEeCH--------HHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence            7765  2222222  23567999999999999999999999865        78888877654 4566778888888877


Q ss_pred             hhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCc
Q 038416          272 VDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRT  351 (387)
Q Consensus       272 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~  351 (387)
                      ++. .+.++++..+.++++++.+.+.|++++++. +..|.+++++|+.++..     .+..+++..+++++||.+.||..
T Consensus       267 l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~ll~~~gi~v~~g~~  339 (375)
T 3op7_A          267 LAH-YQEILERNRHILEENLAILDQWIEEEPLVS-YIRPAVVSTSFVKIAVD-----MPMEDFCLQLLQEHGVLLVPGNR  339 (375)
T ss_dssp             HHT-HHHHHHHHHHHHHHHHHHHHHHHHHCTTEE-ECCCSSSSCEEEEECCS-----SCHHHHHHHHHHHHCEECEEGGG
T ss_pred             Hhc-cHHHHHHHHHHHHHHHHHHHHHHhhCCCce-EecCCCeEEEeEEcCCC-----CCHHHHHHHHHHhCCEEEeChhh
Confidence            774 456678888888999999999999888887 44788888888877642     24667888887888999999999


Q ss_pred             cCCCCeEEEEeeCChHhHHHHHHHHHHHHHHhhh
Q 038416          352 VGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       352 ~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      |+.++++|++++.+.+++++++++|.++++++.+
T Consensus       340 ~~~~~~iRi~~~~~~~~i~~~l~~l~~~l~~~~~  373 (375)
T 3op7_A          340 FERDGYVRLGFACEQETLIKGLEKLSQFLRRFDK  373 (375)
T ss_dssp             GTCTTEEEECCCSCHHHHHHHHHHHHHHHGGGC-
T ss_pred             hCCCCeEEEEecCCHHHHHHHHHHHHHHHHHHhh
Confidence            8888999999988889999999999999988754

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=100.00  E-value=2.7e-42  Score=318.80  Aligned_cols=330  Identities=20%  Similarity=0.277  Sum_probs=278.6

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCC-CCCCEEEcCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKL-SPEDVYLTLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~-~~~~i~~~~g~~~a~~   87 (387)
                      .+++++.+.+    +++.++.+.+++.+.+.......|+. .+..++|+.+++++      ++ ++++|++|+|+++++.
T Consensus        31 ~~i~l~~~~~----~~~~~~~v~~a~~~~~~~~~~~~y~~-~~~~~l~~~la~~~------g~~~~~~i~~~~g~t~a~~   99 (367)
T 3euc_A           31 GLVKLDAMEN----PYRLPPALRSELAARLGEVALNRYPV-PSSEALRAKLKEVM------QVPAGMEVLLGNGSDEIIS   99 (367)
T ss_dssp             TCEECCSSCC----CCCCCHHHHHHHHHHHHHHHTTCSCC-CCHHHHHHHHHHHH------TCCTTCEEEEEEHHHHHHH
T ss_pred             CeeEccCCCC----CCCCCHHHHHHHHHHhhhhhhhcCCC-CcHHHHHHHHHHHh------CCCCcceEEEcCCHHHHHH
Confidence            4556666554    78899999999999887433457776 47899999999998      34 6789999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCccccCC
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCGNVFS  166 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~  166 (387)
                      .++.+++++||+|+++.|+|.++...++  ..|.+++.+++++  ++.+|++++++++++ ++++|++++|+||||.+++
T Consensus       100 ~~~~~~~~~gd~Vl~~~~~~~~~~~~~~--~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~  175 (367)
T 3euc_A          100 MLALAAARPGAKVMAPVPGFVMYAMSAQ--FAGLEFVGVPLRA--DFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFD  175 (367)
T ss_dssp             HHHHHTCCTTCEEEEEESCSCCSCHHHH--TTTCEEEEEECCT--TSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCC
T ss_pred             HHHHHHcCCCCEEEEcCCCHHHHHHHHH--HcCCeEEEecCCC--CCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCC
Confidence            9999999999999999999999999999  9999999998864  568899999999987 8999999999999999999


Q ss_pred             HHHHHHHHHHHHhc--CcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccch
Q 038416          167 YQHLQKIARTARNL--GIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNS  244 (387)
Q Consensus       167 ~~~~~~l~~~~~~~--~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~  244 (387)
                      .+++++|+++|++|  |+++|+|++|+.+...+  .  ...+...++++++.|+||. +++|+|+||+++++        
T Consensus       176 ~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~--~--~~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~~--------  242 (367)
T 3euc_A          176 AADMEAIVRAAQGSVCRSLVVVDEAYQPFAQES--W--MSRLTDFGNLLVMRTVSKL-GLAGIRLGYVAGDP--------  242 (367)
T ss_dssp             HHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCC--S--GGGGGTCTTEEEEEECCCT-TSCSCCEEEEEECH--------
T ss_pred             HHHHHHHHHhhhhcCCCcEEEEeCcchhhcccc--h--HHHHhhCCCEEEEecchhh-cccccCceeeeeCH--------
Confidence            99999999999999  99999999999866322  2  2233445678999999999 99999999999965        


Q ss_pred             hHHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccc
Q 038416          245 GFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSM  324 (387)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~  324 (387)
                      ++++.+..... .++++++.+.++..+++.  ..++++..++++++++.+.+.|+++|++. + .+..++|+|+.++   
T Consensus       243 ~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~-~~~~~~~~~~~~~---  314 (367)
T 3euc_A          243 QWLEQLDKVRP-PYNVNVLTEATALFALEH--VAVLDEQAAQLRAERSRVAEGMAAHGGVT-V-FPSAANFLLARVP---  314 (367)
T ss_dssp             HHHHHHGGGCC-SSCCCHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHTSTTCE-E-CCCSSSEEEEECS---
T ss_pred             HHHHHHHHhCC-CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCcE-E-CCCCCeEEEEECC---
Confidence            78887776644 467889999999999886  67788999999999999999999998888 4 5667788898876   


Q ss_pred             ccCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHH
Q 038416          325 LEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       325 ~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~  381 (387)
                           +..++...+ .++||.+.+|..|..  .+++||+++ ++++++++++.|+++++
T Consensus       315 -----~~~~l~~~l-~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l~  366 (367)
T 3euc_A          315 -----DAAQTFDRL-LARKVLIKNVSKMHPLLANCLRVTVS-TPEENAQFLEAFAASLQ  366 (367)
T ss_dssp             -----CHHHHHHHH-HTTTEECEECGGGCGGGTTEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred             -----CHHHHHHHH-HHCCeEEEECCccCCCCCCEEEEecC-CHHHHHHHHHHHHHHhc
Confidence                 345666665 677999999987653  689999988 88999999999988753

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=100.00  E-value=7.3e-43  Score=328.18  Aligned_cols=351  Identities=16%  Similarity=0.176  Sum_probs=279.1

Q ss_pred             ccccccCCCCCCCC-CCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHH
Q 038416            6 GQETRHSPWPRRPL-GVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQ   84 (387)
Q Consensus         6 g~~~~~~~~~~~~~-~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~   84 (387)
                      |.+.+++++.|.|. .++++++++.+.+++.+..... ..+|++..|..++|+.+++++....+.. .+++|++|+|+++
T Consensus        36 g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~~~~~~~~~-~~~~i~~t~g~~~  113 (418)
T 3rq1_A           36 GRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSE-HVGYAPIAGIPDFLCAAEKECFGNFRPE-GHIRSIATAGGTG  113 (418)
T ss_dssp             CGGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHH-HHSCCCTTCCHHHHHHHHHHHHGGGCCS-SEEEEEEESHHHH
T ss_pred             cCCCeEECCCCcccCCCCCccccHHHHHHHHHhcccc-cCCCCCCCChHHHHHHHHHHHhcccCcc-ccccEEECCchHH
Confidence            45567888899763 3447889999999987754322 2478887899999999999997644311 2339999999999


Q ss_pred             HHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc----Cce-EEEEeCC-C
Q 038416           85 AIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE----NTV-AIVIINP-G  158 (387)
Q Consensus        85 a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~-~v~l~~p-~  158 (387)
                      ++..++.+++++||+|+++.|+|.++...+.  ..|.+++.+++.+++ +.+|++++++++++    +++ ++++++| +
T Consensus       114 al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~--~~g~~~~~v~~~~~~-~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~  190 (418)
T 3rq1_A          114 GIHHLIHNYTEPGDEVLTADWYWGAYRVICS--DTGRTLVTYSLFDEH-NNFNHEAFQNRVNELAAKQTNVVVIFNTPGN  190 (418)
T ss_dssp             HHHHHHHHHSCTTCEEEEESSCCTHHHHHHH--HTTCEEEEECSBCTT-SSBCHHHHHHHHHHHHHHCSEEEEEEECSSC
T ss_pred             HHHHHHHHhcCCCCEEEECCCCchhHHHHHH--HcCCEEEEEeeeCCC-CCcCHHHHHHHHHHhhccCCCEEEEEeCCCC
Confidence            9999999999999999999999999999999  999999999986443 68899999998874    565 7888899 9


Q ss_pred             CCccccCCHHHHHHHHHHHH------hcCcEEeecccccccccCCCCCccccc-cC-CCcc--EEEEecCcccccccccc
Q 038416          159 NPCGNVFSYQHLQKIARTAR------NLGIIVIADEVYNHLAFGSTPYVPMGV-FG-SIVP--VITLGSISKRWIVPGWR  228 (387)
Q Consensus       159 nptG~~~~~~~~~~l~~~~~------~~~~~li~D~~~~~~~~~~~~~~~~~~-~~-~~~~--~~~i~s~sK~~~~~g~r  228 (387)
                      ||||.+++.+++++|+++|+      ++|+++|+||+|.++.+.+....++.. .. ..++  +++++|+||.|+++|+|
T Consensus       191 NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r  270 (418)
T 3rq1_A          191 NPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQR  270 (418)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCc
Confidence            99999999999999999999      899999999999998866532223221 11 1223  58899999999999999


Q ss_pred             eEEEEe---eCCCCcccchhHHHHHHhhhh-----ccCCcchHHHHHHHHHhhhcc-----HHHHHHHHHHHHHHHHHHH
Q 038416          229 LGWLVT---SDPNGILQNSGFVDSIKGCLN-----AASHPVTFIQAAVPRIVDETN-----EAFFAKIIGLLKETADICY  295 (387)
Q Consensus       229 ~G~i~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~  295 (387)
                      +||+++   ++        ++++.+.....     ...+++.+++.++..++++..     ...+.+..+.++++++.+.
T Consensus       271 ~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~  342 (418)
T 3rq1_A          271 VGAMIGISDDE--------EIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFK  342 (418)
T ss_dssp             CEEEEEEESSH--------HHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCH--------HHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998   43        67777776532     124578888999888887632     1233456678888999999


Q ss_pred             HHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee-CChHhHHHHHH
Q 038416          296 ERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA-AEPATLEDGLE  374 (387)
Q Consensus       296 ~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~-~~~e~~~~~~~  374 (387)
                      +.|+++ ++.+ ..|.+++|+|+.++        +..++... +.++||.+.||     ++++||+++ .++++++++++
T Consensus       343 ~~L~~~-g~~~-~~~~~~~~~~~~~~--------~~~~~~~~-l~~~gi~v~~g-----~~~iRis~~~~~~~~i~~~~~  406 (418)
T 3rq1_A          343 QEAAQV-GLPM-LPYRGGFFITIPTD--------SANAICEE-LKKEHIYVIAL-----ANGIRIAACGIPKCQMTGLAE  406 (418)
T ss_dssp             HHHHHH-TCCC-CCCCSSSEEEEECT--------THHHHHHH-HHHTTEECEEC-----SSEEEEEGGGSCHHHHTTHHH
T ss_pred             HHHHhc-CCCC-CCCCceEEEEcCCC--------CHHHHHHH-HHhCCEEEecC-----CCCeEEEEecCCHHHHHHHHH
Confidence            999888 7874 47888999998764        45566664 57789999998     478999997 59999999999


Q ss_pred             HHHHHHHHhhh
Q 038416          375 RIKAFCQRHAK  385 (387)
Q Consensus       375 ~l~~~~~~~~~  385 (387)
                      +|+++++++.+
T Consensus       407 ~l~~~l~~~~~  417 (418)
T 3rq1_A          407 KIYNAMKSLGK  417 (418)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHHhc
Confidence            99999987653

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=100.00  E-value=8.3e-43  Score=325.59  Aligned_cols=346  Identities=22%  Similarity=0.297  Sum_probs=282.5

Q ss_pred             ccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCC--CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416           10 RHSPWPRRPLGVSLLSDSTVAEDAVVDALRTA--HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      +++++.|.+.  +...+++.+.+++.+++...  ....|++..+..++|+.+++++      ++++++|++|+|+++++.
T Consensus        34 ~i~l~~g~~~--~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~------g~~~~~v~~~~g~~~al~  105 (397)
T 2zyj_A           34 ILSFAGGLPA--PELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWI------GVRPEEVLITTGSQQALD  105 (397)
T ss_dssp             CEEESSCCCC--GGGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHH------TSCGGGEEEESHHHHHHH
T ss_pred             ceecCCCCCC--chhCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHh------CCChhhEEEeccHHHHHH
Confidence            4556566541  12336789999999887642  1246877778999999999999      356789999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc-CceEE-EEeCCCCCccccC
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE-NTVAI-VIINPGNPCGNVF  165 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v-~l~~p~nptG~~~  165 (387)
                      .++.++.++||+|+++.|+|+++...++  ..|.+++.++++++   ++|+++|++++++ ++++| ++++|+||||.++
T Consensus       106 ~~~~~~~~~gd~Vl~~~p~y~~~~~~~~--~~g~~~~~~~~~~~---~~d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~  180 (397)
T 2zyj_A          106 LVGKVFLDEGSPVLLEAPSYMGAIQAFR--LQGPRFLTVPAGEE---GPDLDALEEVLKRERPRFLYLIPSFQNPTGGLT  180 (397)
T ss_dssp             HHHHHHCCTTCEEEEEESCCHHHHHHHH--TTCCEEEEEEEETT---EECHHHHHHHHHHCCCSCEEECCBSCTTTCCBC
T ss_pred             HHHHHhCCCCCEEEEeCCCcHHHHHHHH--HcCCEEEecCcCCC---CCCHHHHHHHHhhcCCeEEEECCCCcCCCCCcC
Confidence            9999999999999999999999999999  99999999987542   4899999999876 77887 5789999999999


Q ss_pred             CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCC---ccEEEEecCcccccccccceEEEEeeCCCCccc
Q 038416          166 SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSI---VPVITLGSISKRWIVPGWRLGWLVTSDPNGILQ  242 (387)
Q Consensus       166 ~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~  242 (387)
                      |.+++++|+++|+++|+++|+||+|+.+.+++....++..++.+   ++++++.|+||+++ +|+|+||+++++      
T Consensus       181 ~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~------  253 (397)
T 2zyj_A          181 PLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLS-PGLRVAFAVAHP------  253 (397)
T ss_dssp             CHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTC-GGGCCEEEECCH------
T ss_pred             CHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccc-ccceeEEEecCH------
Confidence            99999999999999999999999999988876655555555444   67899999999998 999999999975      


Q ss_pred             chhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc-CC-CCCCCCCCCceEEEEEe
Q 038416          243 NSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE-IP-CITCPVKPQGAMFVMVK  319 (387)
Q Consensus       243 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~g~~~~~~  319 (387)
                        ++++.+..... ...+.+++.+.++..+|+....+++++..++++++++.+.+.|++ +| ++. +..|.+|+++|++
T Consensus       254 --~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~-~~~~~~g~~~~~~  330 (397)
T 2zyj_A          254 --EALQKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVR-YTRPKGGMFVWME  330 (397)
T ss_dssp             --HHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSE-ECCCSBSSEEEEE
T ss_pred             --HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeE-EccCCccEEEEEE
Confidence              67777776543 335568889999888888632256788888999999999999987 67 577 3367889999998


Q ss_pred             cCcccccCCCcHHHHHHHHHHhcCeEEEcCCccC----CCCeEEEEeeC-ChHhHHHHHHHHHHHHHHhh
Q 038416          320 LNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG----MKNWLRIAFAA-EPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~----~~~~~Ri~~~~-~~e~~~~~~~~l~~~~~~~~  384 (387)
                      ++..     .+..++...++++ ||.+.||..|.    .++++||+++. +++++++++++|+++++++.
T Consensus       331 ~~~~-----~~~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~  394 (397)
T 2zyj_A          331 LPKG-----LSAEGLFRRALEE-NVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRLGRALKGLL  394 (397)
T ss_dssp             CSTT-----CCHHHHHHHHHHT-TEEEEESGGGCTTSCCTTEEEEECSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCC-----CCHHHHHHHHHHC-CCEEechHHhcCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            8641     1456777777555 99999998875    35799999975 68999999999999998765

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=100.00  E-value=3e-42  Score=325.65  Aligned_cols=351  Identities=21%  Similarity=0.340  Sum_probs=281.5

Q ss_pred             CCCcHHHHHHHHHHhcCCC-----------CCCCCCCCCcHHHHHHHHHHHhhcCC--CCCCCCCEEEcCChHHHHHHHH
Q 038416           24 LSDSTVAEDAVVDALRTAH-----------YNCYSPTLGVPSARRGIADYLNRDLP--YKLSPEDVYLTLGCSQAIEISL   90 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~-----------~~~y~~~~~~~~lr~~ia~~~~~~~~--~~~~~~~i~~~~g~~~a~~~~~   90 (387)
                      ....+.+.+++.+......           ..+|++..|..+||+.+++++.+.++  .++++++|++|+|+++++..++
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~  128 (435)
T 3piu_A           49 QLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFI  128 (435)
T ss_dssp             CSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHH
T ss_pred             cccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHH
Confidence            3457778887777554221           13688888999999999999986544  4567899999999999999999


Q ss_pred             HhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc------CceEEEEeCCCCCcccc
Q 038416           91 SVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE------NTVAIVIINPGNPCGNV  164 (387)
Q Consensus        91 ~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~  164 (387)
                      .+++++||.|+++.|+|.++...+. ...|.+++.++++++.++.+|+++|++++++      ++++|++++|+||||.+
T Consensus       129 ~~l~~~gd~vl~~~p~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~  207 (435)
T 3piu_A          129 FCLADPGEAVLIPTPYYPGFDRDLK-WRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTT  207 (435)
T ss_dssp             HHHCCTTCEEEEEESCCTTHHHHTT-TTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCC
T ss_pred             HHhcCCCCeEEECCCccccHHHHHH-HhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCC
Confidence            9999999999999999998876554 0378999999987666678999999999875      78899999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC----------CccEEEEecCcccccccccceEEEEe
Q 038416          165 FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS----------IVPVITLGSISKRWIVPGWRLGWLVT  234 (387)
Q Consensus       165 ~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~s~sK~~~~~g~r~G~i~~  234 (387)
                      +|.+++++|+++|++||+++|+||+|+.+.+.+..+.++..+..          .++++++.|+||.|+++|+|+||+++
T Consensus       208 ~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~  287 (435)
T 3piu_A          208 MTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYS  287 (435)
T ss_dssp             CCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEE
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEe
Confidence            99999999999999999999999999998888766555444322          46789999999999999999999998


Q ss_pred             eCCCCcccchhHHHHHHhhhhccCCcchHHHHHHHHHhhhcc--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCc
Q 038416          235 SDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETN--EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQG  312 (387)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  312 (387)
                      ++       +++.+.+..... ....+++.+.++..++....  +.++.+..++++++++.+.+.|+++ ++.+. .+.+
T Consensus       288 ~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~  357 (435)
T 3piu_A          288 ND-------DMVVAAATKMSS-FGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GISCL-NGNA  357 (435)
T ss_dssp             SC-------HHHHHHHHHHGG-GSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEEC-CCCS
T ss_pred             CC-------HHHHHHHHHHhh-cCCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccc-CCCe
Confidence            54       246666655433 35667888888888887533  3466788889999999999999988 77743 6778


Q ss_pred             eEEEEEecCcccccC-CCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeC-ChHhHHHHHHHHHHHHHHhhh
Q 038416          313 AMFVMVKLNVSMLED-IGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAA-EPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       313 g~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~-~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      |+++|+.++...... ..+..++...+++++||.+.||..|+.  ++++||+++. +++++++++++|+++++++++
T Consensus       358 g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~e~i~~~l~~l~~~l~~~~~  434 (435)
T 3piu_A          358 GLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFVGEYYN  434 (435)
T ss_dssp             SSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCHHHHHHHHHHHHHHHHHHC-
T ss_pred             eEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCCCHHHHHHHHHHHHHHHHHHhC
Confidence            899999987521100 002346777777777999999988754  6899999976 899999999999999988753

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=100.00  E-value=1.4e-42  Score=326.36  Aligned_cols=345  Identities=17%  Similarity=0.160  Sum_probs=272.6

Q ss_pred             cccCCCCCCCCCCCCC--CCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCC--CEEEcCChHH
Q 038416            9 TRHSPWPRRPLGVSLL--SDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE--DVYLTLGCSQ   84 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~--~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~--~i~~~~g~~~   84 (387)
                      .+++++.|.. .+|+.  ++++.+.+++.+++.......|++..|..++|+.+++++....+..++++  +|++|+|+++
T Consensus        50 ~~i~l~~G~y-~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~  128 (420)
T 4f4e_A           50 TKVNLGVGVY-TNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTG  128 (420)
T ss_dssp             SCEECCCCSC-CCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred             CcEEeeeeee-ECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHH
Confidence            5678888832 12244  45599999999998875456888888999999999999976444333577  8999999999


Q ss_pred             HHHHHH--HhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc---cCceEEEEeCCCC
Q 038416           85 AIEISL--SVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD---ENTVAIVIINPGN  159 (387)
Q Consensus        85 a~~~~~--~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~n  159 (387)
                      ++..++  .+++++||+|+++.|+|.++...++  ..|.+++.+++...+++.+|++.+++.++   ++++++++++|+|
T Consensus       129 al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~N  206 (420)
T 4f4e_A          129 ALKIGADFLRTLNPKAKVAISDPSWENHRALFD--MAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHN  206 (420)
T ss_dssp             HHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHH--HTTCCEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCT
T ss_pred             HHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHH--HcCCeEEEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCC
Confidence            999995  4567899999999999999999999  99999999998544567899999999987   6788999999999


Q ss_pred             CccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCC-CCcccccc-CCCccEEEEecCcccccccccceEEEEeeCC
Q 038416          160 PCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGST-PYVPMGVF-GSIVPVITLGSISKRWIVPGWRLGWLVTSDP  237 (387)
Q Consensus       160 ptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~-~~~~~~~~-~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~  237 (387)
                      |||..++.+++++|+++|+++|+++|+|++|+++.+++. ...++..+ ...++++++.|+||.|+++|+|+||+++..+
T Consensus       207 PtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~  286 (420)
T 4f4e_A          207 PTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYGERVGALSIITD  286 (420)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCEEEEEEECS
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcCCCcEEEEEEcC
Confidence            999999999999999999999999999999999888642 22233332 2346789999999999999999999975321


Q ss_pred             CCcccchhHHHH----HHhhh-hccCCcchHHHHHHHHHhhhcc-----HHHHHHHHHHHHHHHHHHHHHhhcC---CCC
Q 038416          238 NGILQNSGFVDS----IKGCL-NAASHPVTFIQAAVPRIVDETN-----EAFFAKIIGLLKETADICYERIKEI---PCI  304 (387)
Q Consensus       238 ~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~---~~~  304 (387)
                           ++++++.    ++... ....+++.+.+.++..++....     +.++++..++++++++.+.+.|+++   +++
T Consensus       287 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  361 (420)
T 4f4e_A          287 -----SKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDF  361 (420)
T ss_dssp             -----SHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred             -----CHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence                 1244433    22222 2345567888888888777532     4567888899999999999999986   367


Q ss_pred             CCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeC-ChHhHHHHHHHHHHHH
Q 038416          305 TCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAA-EPATLEDGLERIKAFC  380 (387)
Q Consensus       305 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~-~~e~~~~~~~~l~~~~  380 (387)
                      . +..|.+|+|+|+.++         . +.+..+++++||.+.|+.        ||+++. +++++++++++|++++
T Consensus       362 ~-~~~~~~g~~~~~~~~---------~-~~~~~~l~~~gI~v~~~~--------Ris~~~~~~~~i~~~~~~l~~~l  419 (420)
T 4f4e_A          362 S-FINAQRGMFSYSGLT---------S-AQVDRLREEFGIYAVSTG--------RICVAALNTRNLDVVANAIAAVL  419 (420)
T ss_dssp             T-HHHHSCSSEEECCCC---------H-HHHHHHHHHHCEECCTTS--------EEEGGGCCTTTHHHHHHHHHHHH
T ss_pred             e-eECCCccEEEEeCCC---------H-HHHHHHHHhCCEEecCCC--------eEEEecCCHHHHHHHHHHHHHHh
Confidence            7 336888999997663         2 345666778899999863        999965 8888999999998876

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=100.00  E-value=1.2e-41  Score=312.98  Aligned_cols=321  Identities=17%  Similarity=0.316  Sum_probs=260.7

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      .+++++.+.+    .+++|+.+      ++  ....+|++. +..++|+.+++++      ++++++|++|+|+++++..
T Consensus        30 ~~i~l~~~~~----~~~~~~~v------a~--~~~~~Y~~~-~~~~lr~~la~~~------~~~~~~v~~~~G~~~ai~~   90 (356)
T 1fg7_A           30 GDVWLNANEY----PTAVEFQL------TQ--QTLNRYPEC-QPKAVIENYAQYA------GVKPEQVLVSRGADEGIEL   90 (356)
T ss_dssp             CSEECSSCCC----SSCCCCCC------CC--CCTTSCCCS-SCHHHHHHHHHHH------TSCGGGEEEESHHHHHHHH
T ss_pred             ceEEeeCCCC----CCCCCHhH------hh--hhhccCCCc-cHHHHHHHHHHHh------CCChHHEEEcCCHHHHHHH
Confidence            3455655543    46666655      12  234678875 4899999999999      4677899999999999999


Q ss_pred             HHHhhcCCC-CeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           89 SLSVLARPG-ANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        89 ~~~~l~~~g-~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      ++++++++| |+|+++.|+|+++...++  ..|.++..++++  +++.+|+++++++++ ++++|++++|+||||.++|.
T Consensus        91 ~~~~~~~~g~d~Vl~~~p~~~~~~~~~~--~~g~~~~~v~~~--~~~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~  165 (356)
T 1fg7_A           91 LIRAFCEPGKDAILYCPPTYGMYSVSAE--TIGVECRTVPTL--DNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINP  165 (356)
T ss_dssp             HHHHHCCTTTCEEEECSSSCTHHHHHHH--HHTCEEEECCCC--TTSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCH
T ss_pred             HHHHHhCCCCCEEEEeCCChHHHHHHHH--HcCCEEEEeeCC--CCCCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCH
Confidence            999999999 999999999999999999  899999988875  456789999999888 88999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCcccccc-CCCccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF-GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      +++++++++|+ +|+++|+||+|+++.. +   .++..+ ...++++++.|+||.|+++|+|+||+++++        ++
T Consensus       166 ~~l~~l~~~~~-~~~~li~De~~~~~~~-~---~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~--------~~  232 (356)
T 1fg7_A          166 QDFRTLLELTR-GKAIVVADEAYIEFCP-Q---ASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANE--------EV  232 (356)
T ss_dssp             HHHHHHHHHHT-TTCEEEEECTTGGGSG-G---GCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECH--------HH
T ss_pred             HHHHHHHHhCC-CCCEEEEEccchhhcC-C---CcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCH--------HH
Confidence            99999999999 9999999999998652 1   122222 334578999999999999999999999965        78


Q ss_pred             HHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccccc
Q 038416          247 VDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE  326 (387)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~  326 (387)
                      ++.+..... .++++++.+.++.+++++....++++..++++++++.+.+.|++++++..+ .|..++|+|++++     
T Consensus       233 ~~~l~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~-----  305 (356)
T 1fg7_A          233 INLLMKVIA-PYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQV-FDSETNYILARFK-----  305 (356)
T ss_dssp             HHHHHHHSC-SSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEE-CCCSSSEEEEEET-----
T ss_pred             HHHHHHhcC-CCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEE-CCCCCeEEEEECC-----
Confidence            888876644 346888899988888875332348888899999999999999988654323 5667889998885     


Q ss_pred             CCCcHHHHHHHHHHhcCeEEEc-CCccCCCCeEEEEeeCChHhHHHHHHHHHH
Q 038416          327 DIGDDLEFCLKLAKEESVIILP-GRTVGMKNWLRIAFAAEPATLEDGLERIKA  378 (387)
Q Consensus       327 ~~~~~~~~~~~ll~~~gi~v~~-g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~  378 (387)
                         +..++...+ .++||.+.+ |..|+.++++||+++ +++++++++++|++
T Consensus       306 ---~~~~l~~~L-~~~gI~v~~~g~~~~~~~~iRis~~-~~~e~~~~~~~l~~  353 (356)
T 1fg7_A          306 ---ASSAVFKSL-WDQGIILRDQNKQPSLSGCLRITVG-TREESQRVIDALRA  353 (356)
T ss_dssp             ---THHHHHHHH-HHTTEECEECTTSTTCTTEEEEECC-CHHHHHHHHHHHHT
T ss_pred             ---CHHHHHHHH-HHCCEEEEECCCCCCCCCeEEEEeC-CHHHHHHHHHHHHh
Confidence               345677766 677999999 888877789999997 47889998888764

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=100.00  E-value=5.6e-42  Score=320.25  Aligned_cols=342  Identities=17%  Similarity=0.209  Sum_probs=265.9

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCC----CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTA----HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQ   84 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~----~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~   84 (387)
                      .+++++.|.+    ++++++.+.+++.+++...    ....|++..+..++|+.+++++.  ++. +++++|++|+|+++
T Consensus        34 ~~i~l~~~~~----~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~--~g~-~~~~~v~~~~G~~~  106 (400)
T 3asa_A           34 TVINLSIGDT----TQPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFY--RGF-VDAKEIFISDGAKV  106 (400)
T ss_dssp             CCEECSSCCC----CCCCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTS--TTS-SCGGGEEEESCHHH
T ss_pred             ceEeccCCCC----CCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHH--cCC-CCHHHEEEccChHH
Confidence            4566777665    6788999999999887641    23568776789999999999964  333 67889999999999


Q ss_pred             HHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCce-eeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccc
Q 038416           85 AIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLE-ARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGN  163 (387)
Q Consensus        85 a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~  163 (387)
                      ++..++.. +++||+|+++.|+|+++...+.  ..|.+ +..+++++++++..++++    + +++++|++++|+||||.
T Consensus       107 al~~~~~~-~~~gd~Vl~~~p~y~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~l~~----~-~~~~~v~l~~p~nptG~  178 (400)
T 3asa_A          107 DLFRLLSF-FGPNQTVAIQDPSYPAYLDIAR--LTGAKEIIALPCLQENAFFPEFPE----D-THIDILCLCSPNNPTGT  178 (400)
T ss_dssp             HHHHHHHH-HCSSCEEEEEESCCHHHHHHHH--HTTCSEEEEEECCGGGTTCCCCCT----T-CCCSEEEEESSCTTTCC
T ss_pred             HHHHHHHH-cCCCCEEEECCCCcHHHHHHHH--HcCCcceEecccchhcCcccChhh----c-cCccEEEEeCCCCCCCC
Confidence            99997654 5789999999999999998888  88998 888887654444444432    1 57889999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEeeCCCCccc
Q 038416          164 VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQ  242 (387)
Q Consensus       164 ~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~  242 (387)
                      ++|.+++++|+++|+++|+++|+|++|+++.+.+....++..++. .+++++++|+||.|+++|+|+||+++++      
T Consensus       179 ~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~------  252 (400)
T 3asa_A          179 VLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQ------  252 (400)
T ss_dssp             CCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCT------
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchheeEEeeCh------
Confidence            999999999999999999999999999988776543344544432 3468999999999999999999999875      


Q ss_pred             chhH-------HHHHHhh-h-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCce
Q 038416          243 NSGF-------VDSIKGC-L-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGA  313 (387)
Q Consensus       243 ~~~~-------~~~~~~~-~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g  313 (387)
                        ++       ++.+... . ....+++++.+.++..+++..   ++++..+.++++++.+.+.|+++ ++. +..+.++
T Consensus       253 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~~  325 (400)
T 3asa_A          253 --ELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSIL---PQLEAIHYYRENSDLLRKALLAT-GFE-VFGGEHA  325 (400)
T ss_dssp             --TCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHHHHHHHT-TCE-EEECSSS
T ss_pred             --hhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHHHHHHHC-CCe-eeCCCCc
Confidence              33       3434322 1 123467888999888888753   56778888999999999999988 777 3356678


Q ss_pred             EEEEEe-cCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHHHh
Q 038416          314 MFVMVK-LNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       314 ~~~~~~-~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      +|+|++ ++..     .+..++...+++++||.+.||..|+.  ++++||++..+++++++++++|++++++.
T Consensus       326 ~~~~~~~~~~~-----~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~~  393 (400)
T 3asa_A          326 PYLWVKPTQAN-----ISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLGKREDILAACERLQMAPALQ  393 (400)
T ss_dssp             SEEEEECCCTT-----CCTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECCSCHHHHHHHHHHHHC-----
T ss_pred             eEEEEeccCCC-----CCHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence            899998 6531     13446777777778999999988763  57899998788999999999999888664

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=100.00  E-value=2.8e-42  Score=322.03  Aligned_cols=345  Identities=15%  Similarity=0.144  Sum_probs=271.8

Q ss_pred             ccccCCCCCCCCCCCC--CCCcHHHHHHHHH-HhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCC--CEEEcCCh
Q 038416            8 ETRHSPWPRRPLGVSL--LSDSTVAEDAVVD-ALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE--DVYLTLGC   82 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~--~~~~~~v~~a~~~-~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~--~i~~~~g~   82 (387)
                      +.+++++.|.. .+++  .+.++.+.+++.+ ++.......|++..|..++|+.+++++....+..++++  +|++|+|+
T Consensus        26 ~~~i~l~~g~y-~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~  104 (397)
T 3fsl_A           26 SDKVNLSIGLY-YNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGG  104 (397)
T ss_dssp             SCCEECSSCCC-CCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHH
T ss_pred             CCeEEEeeeEE-ECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCc
Confidence            35678888832 1123  3455999999999 88764456888888999999999999976544334678  89999999


Q ss_pred             HHHHHHHHH--hhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc---cCceEEEEeCC
Q 038416           83 SQAIEISLS--VLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD---ENTVAIVIINP  157 (387)
Q Consensus        83 ~~a~~~~~~--~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p  157 (387)
                      ++++..+++  .++++||+|+++.|+|.++...++  ..|.+++.+++...+++.+|+++++++++   ++++++++++|
T Consensus       105 ~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p  182 (397)
T 3fsl_A          105 SGALKVGADFLKRYFPESGVWVSDPTWENHVAIFA--GAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCC  182 (397)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHH--HTTCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSS
T ss_pred             HHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHH--HcCCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCC
Confidence            999999954  457899999999999999999999  99999999988545567899999999987   57788999999


Q ss_pred             CCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCC-CCcccccc-CCCccEEEEecCcccccccccceEEEEee
Q 038416          158 GNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGST-PYVPMGVF-GSIVPVITLGSISKRWIVPGWRLGWLVTS  235 (387)
Q Consensus       158 ~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~-~~~~~~~~-~~~~~~~~i~s~sK~~~~~g~r~G~i~~~  235 (387)
                      +||||..++.+++++|+++|+++|+++|+||+|+++.+++. ...++..+ ...+++++++|+||.++++|+|+||++++
T Consensus       183 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~riG~~~~~  262 (397)
T 3fsl_A          183 HNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVM  262 (397)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCCEEEEEE
T ss_pred             CCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcCCCeeEEEEe
Confidence            99999999999999999999999999999999999887632 22233333 34567899999999999999999999864


Q ss_pred             CCCCcccchhHHHHHHhh----h-hccCCcchHHHHHHHHHhhhcc-----HHHHHHHHHHHHHHHHHHHHHhhcCC---
Q 038416          236 DPNGILQNSGFVDSIKGC----L-NAASHPVTFIQAAVPRIVDETN-----EAFFAKIIGLLKETADICYERIKEIP---  302 (387)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~---  302 (387)
                      ..     +++.++.+...    . .....++.+++.++..++....     +.++++..++++++++.+.+.|++++   
T Consensus       263 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  337 (397)
T 3fsl_A          263 CE-----DAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPER  337 (397)
T ss_dssp             CS-----SHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred             cC-----CHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            21     12344433222    1 2344567788888888777532     46678888999999999999999864   


Q ss_pred             CCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeC-ChHhHHHHHHHHHHH
Q 038416          303 CITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAA-EPATLEDGLERIKAF  379 (387)
Q Consensus       303 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~-~~e~~~~~~~~l~~~  379 (387)
                      ++. +..|.+|+|+|+.++         . +.+..+++++||.+.||.        ||+++. +++++++++++|+++
T Consensus       338 ~~~-~~~~~~~~~~~~~~~---------~-~~~~~~l~~~gi~v~~g~--------Ris~~~~~~~~i~~~~~~l~~~  396 (397)
T 3fsl_A          338 NFD-YLLNQRGMFSYTGLS---------A-AQVDRLREEFGVYLIASG--------RMCVAGLNTANVQRVAKAFAAV  396 (397)
T ss_dssp             CCT-HHHHCCSSEEECCCC---------H-HHHHHHHHTTCEECCTTC--------EEEGGGCCTTTHHHHHHHHHHH
T ss_pred             Cce-eecCCceEEEecCCC---------H-HHHHHHHHhCCEEECCCC--------eEEEEecCHhhHHHHHHHHHhh
Confidence            576 336778999997664         2 345666788899999974        999965 888899999999875

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=100.00  E-value=2.9e-41  Score=311.51  Aligned_cols=334  Identities=19%  Similarity=0.260  Sum_probs=267.6

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      .+++++.|.+    +++.++.+.+++.+.+..  ...|+. .+..++|+.+++++      ++++++|++|+|+++++..
T Consensus        25 ~~idl~~~~~----~~~~~~~v~~a~~~~~~~--~~~y~~-~~~~~l~~~la~~~------~~~~~~v~~~~g~~~al~~   91 (364)
T 1lc5_A           25 QLLDFSANIN----PLGMPVSVKRALIDNLDC--IERYPD-ADYFHLHQALARHH------QVPASWILAGNGETESIFT   91 (364)
T ss_dssp             GSEECSSCCC----TTCCCHHHHHHHHHTGGG--GGSCCC-TTCHHHHHHHHHHH------TSCGGGEEEESSHHHHHHH
T ss_pred             ceEEeccccC----CCCCCHHHHHHHHHHHHH--hhcCCC-CCHHHHHHHHHHHH------CcCHHHEEECCCHHHHHHH
Confidence            4667777654    567889999999998864  346765 47899999999999      4577899999999999999


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      ++.++  +||+|+++.|+|+++...++  ..|.+++.++++.++++.+ ++++.+.++++++++++++|+||||.++|.+
T Consensus        92 ~~~~~--~gd~vl~~~p~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~~v~i~~p~nptG~~~~~~  166 (364)
T 1lc5_A           92 VASGL--KPRRAMIVTPGFAEYGRALA--QSGCEIRRWSLREADGWQL-TDAILEALTPDLDCLFLCTPNNPTGLLPERP  166 (364)
T ss_dssp             HHHHH--CCSEEEEEESCCTHHHHHHH--HTTCEEEEEECCGGGTTCC-CTTHHHHCCTTCCEEEEESSCTTTCCCCCHH
T ss_pred             HHHHc--CCCeEEEeCCCcHHHHHHHH--HcCCeEEEEeCCcccccch-hHHHHHhccCCCCEEEEeCCCCCCCCCCCHH
Confidence            99998  67999999999999999999  8999999998865344444 5767776767889999999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEE-eeCCCCcccchhHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLV-TSDPNGILQNSGFV  247 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~-~~~~~~~~~~~~~~  247 (387)
                      ++++|+++|+++|+++|+|++|+.+.+++...  +..++..++++++.|+||.++++|+|+||++ +++        +++
T Consensus       167 ~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~--~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~--------~~~  236 (364)
T 1lc5_A          167 LLQAIADRCKSLNINLILDEAFIDFIPHETGF--IPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDD--------AAM  236 (364)
T ss_dssp             HHHHHHHHHHHHTCEEEEECTTGGGSTTCCCS--GGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCH--------HHH
T ss_pred             HHHHHHHHhhhcCcEEEEECcChhhccCccch--hhHhccCCCEEEEEECchhhcCCccceEEEEECCH--------HHH
Confidence            99999999999999999999999887653222  2222334578999999999999999999999 754        677


Q ss_pred             HHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccC
Q 038416          248 DSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLED  327 (387)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  327 (387)
                      +.+..... .++++++.+.++..+++.  ..++++..++++++++.+.+.|+++|++. + .+..|+|+|+.++.     
T Consensus       237 ~~l~~~~~-~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~-~~~~g~~~~~~~~~-----  306 (364)
T 1lc5_A          237 ARMRRQQM-PWSVNALAALAGEVALQD--SAWQQATWHWLREEGARFYQALCQLPLLT-V-YPGRANYLLLRCER-----  306 (364)
T ss_dssp             HHHHHHSC-TTCSCHHHHHHHHHGGGC--HHHHHHHHHHHHHHHHHHHHHHHTSTTEE-E-CCCSSSEEEEEESC-----
T ss_pred             HHHHHhCC-CCCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHhcCCCCE-E-CCCCCeEEEEECCC-----
Confidence            77776543 567888999999998886  46788889999999999999999888887 4 34556788887753     


Q ss_pred             CCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          328 IGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       328 ~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                        +..++...+. ++||.+.||..|..  ++++||+++. +++++++++.|+++++++.
T Consensus       307 --~~~~l~~~l~-~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~~~l~~~l~~~~~~~~  361 (364)
T 1lc5_A          307 --EDIDLQRRLL-TQRILIRSCANYPGLDSRYYRVAIRS-AAQNERLLAALRNVLTGIA  361 (364)
T ss_dssp             --TTCCHHHHHH-TTTEECEECTTSTTCCTTEEEEECCC-HHHHHHHHHHHHHHC----
T ss_pred             --cHHHHHHHHH-HCCcEEeeCcccCCCCCCEEEEEeCC-HHHHHHHHHHHHHHhhccc
Confidence              2235666664 56999999988753  5799999864 6778888888888776653

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=100.00  E-value=6.7e-43  Score=328.66  Aligned_cols=344  Identities=19%  Similarity=0.168  Sum_probs=272.9

Q ss_pred             ccCCCCCCCCCCCC---CCCcHHHHHHHHHHhc--C-CCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChH
Q 038416           10 RHSPWPRRPLGVSL---LSDSTVAEDAVVDALR--T-AHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCS   83 (387)
Q Consensus        10 ~~~~~~~~~~~~~~---~~~~~~v~~a~~~~~~--~-~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~   83 (387)
                      .++++.|.|    +   ++.++.+.+++.+.+.  . ....+|++..|..+||+.+++++      ++++++|++|+|++
T Consensus        34 ~i~l~~g~~----~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~------~~~~~~i~~t~G~~  103 (422)
T 3d6k_A           34 SLDLTRGKP----SAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEAL------GLPADLVVAQDGSS  103 (422)
T ss_dssp             CEECCCCSC----CHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHH------TCCGGGEEECSSCH
T ss_pred             eEeCCCCCC----ChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHh------CCChhHEEEecchH
Confidence            678888877    5   7788788888776531  2 23568999889999999999999      46789999999999


Q ss_pred             HHH--HHHHHhhcCC------------CCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc-C
Q 038416           84 QAI--EISLSVLARP------------GANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE-N  148 (387)
Q Consensus        84 ~a~--~~~~~~l~~~------------g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~  148 (387)
                      +++  ..++.++..+            +|+|+++.|+|.++...++  ..|.+++.++++.+   ++|++++++++++ +
T Consensus       104 ~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~--~~g~~~~~v~~~~~---g~d~~~l~~~l~~~~  178 (422)
T 3d6k_A          104 LNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITE--HFGFEMINVPMTDE---GPDMGVVRELVKDPQ  178 (422)
T ss_dssp             HHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHH--HHTCEEEEEEEETT---EECHHHHHHHHTSTT
T ss_pred             HHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHH--HcCCEEEecCCCCC---CCCHHHHHHHHhcCC
Confidence            997  6777777655            3479999999999999999  89999999998642   4899999999875 6


Q ss_pred             ceEEE-EeCCCCCccccCCHHHHHHHHHHHH-hcCcEEeecccccc--cccCCCCCccccc----cCCCccEEEEecCcc
Q 038416          149 TVAIV-IINPGNPCGNVFSYQHLQKIARTAR-NLGIIVIADEVYNH--LAFGSTPYVPMGV----FGSIVPVITLGSISK  220 (387)
Q Consensus       149 ~~~v~-l~~p~nptG~~~~~~~~~~l~~~~~-~~~~~li~D~~~~~--~~~~~~~~~~~~~----~~~~~~~~~i~s~sK  220 (387)
                      +++|+ +++|+||||.++|.+++++|+++|+ ++|+++|+||+|+.  +...+....++..    .+..+++++++||||
T Consensus       179 ~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK  258 (422)
T 3d6k_A          179 VKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSK  258 (422)
T ss_dssp             EEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTT
T ss_pred             CeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhh
Confidence            78877 6899999999999999999999999 99999999999986  4333323334422    234567999999999


Q ss_pred             cccccccceEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhcc--HHHHHHHHHHHHHHHHHHHHH
Q 038416          221 RWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETN--EAFFAKIIGLLKETADICYER  297 (387)
Q Consensus       221 ~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~  297 (387)
                      . +++|+|+||+++++        ++++.+..... .+.+++++.|.++..+++...  +.++++..+.++++++.+.+.
T Consensus       259 ~-~~~GlriG~~~~~~--------~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  329 (422)
T 3d6k_A          259 I-THAGSGVSFFASSK--------ENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEI  329 (422)
T ss_dssp             T-SCTTSSCEEEECCH--------HHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             h-cCcccceEEEEeCH--------HHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            9 89999999999875        78888876643 456788999999999887522  366777788888888888877


Q ss_pred             hhc----CCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEc-CCccC-----CCCeEEEEee-CCh
Q 038416          298 IKE----IPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILP-GRTVG-----MKNWLRIAFA-AEP  366 (387)
Q Consensus       298 l~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~-g~~~~-----~~~~~Ri~~~-~~~  366 (387)
                      |++    ++++. +..|.+|+|+|++++..      +...+ ..++.++||.+.| |..|.     ..+++||+++ .++
T Consensus       330 L~~~l~~~~~~~-~~~p~~g~~~~~~~~~~------~~~~~-~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~~~~  401 (422)
T 3d6k_A          330 LDSRLSEYGVAK-WTSPTGGYFISVDVVPG------TASRV-VELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSLPPV  401 (422)
T ss_dssp             HHHHHGGGTCEE-ECCCSBSSCEEEEESTT------CHHHH-HHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCH
T ss_pred             HHHhcCcCCceE-EeCCCcceEEEEECCCC------CHHHH-HHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCCCCH
Confidence            765    33355 34788899999998641      23344 4566788999999 45453     3579999998 689


Q ss_pred             HhHHHHHHHHHHHHHHhhh
Q 038416          367 ATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       367 e~~~~~~~~l~~~~~~~~~  385 (387)
                      +++++++++|+++++++.+
T Consensus       402 e~i~~~~~~l~~~l~~~~~  420 (422)
T 3d6k_A          402 AELEVAMDGFATCVLMAAL  420 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999999999987653

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=100.00  E-value=4.3e-46  Score=347.22  Aligned_cols=351  Identities=18%  Similarity=0.270  Sum_probs=290.1

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      .+++++.|++    ++++++.+.+++.+++... ..+|++.  ..++|+.+++++.+.++..+++++|++|+|+++++..
T Consensus        32 ~~i~l~~~~~----~~~~~~~v~~a~~~~~~~~-~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~  104 (392)
T 3b1d_A           32 QLLPAWIADM----DFEVMPEVKQAIHDYAEQL-VYGYTYA--SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISI  104 (392)
Confidence            5677788776    8889999999999988653 3467764  7899999999998877777788999999999999999


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCC-CccCChhhHHHhhc-cCceEEEEeCCCCCccccCC
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEK-RWEVDLDGVEALAD-ENTVAIVIINPGNPCGNVFS  166 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~~~~v~l~~p~nptG~~~~  166 (387)
                      ++.++.++||+|+++.|+|+++...+.  ..|.+++.+++.+++ +|.+|+++++++++ ++++++++++|+||||.+++
T Consensus       105 ~~~~~~~~gd~vl~~~p~~~~~~~~~~--~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~  182 (392)
T 3b1d_A          105 AIQAFTKEGEAVLINSPVYPPFARSVR--LNNRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWE  182 (392)
Confidence            999999999999999999999999888  899999988875333 46689999999887 67889999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC--CccEEEEecCcccccccccceEEEEeeCCCCcccch
Q 038416          167 YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS--IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNS  244 (387)
Q Consensus       167 ~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~  244 (387)
                      .+++++|+++|+++|+++|+||+|+++.+++....++..+..  .++++++.|+||.++++|+|+||++++++       
T Consensus       183 ~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~-------  255 (392)
T 3b1d_A          183 REVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENP-------  255 (392)
Confidence            999999999999999999999999999887755555555543  46789999999999999999999998651       


Q ss_pred             hHHHHHHhhhhcc--CCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCCceEEEEEecC
Q 038416          245 GFVDSIKGCLNAA--SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE-IPCITCPVKPQGAMFVMVKLN  321 (387)
Q Consensus       245 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~g~~~~~~~~  321 (387)
                      ++++.+.......  .+++++.+.++..+++. .+.++++..+.++++++.+.+.|++ +|++. +..|.+++++|++++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~i~~~  333 (392)
T 3b1d_A          256 TLCAQFKHQQLVNNHHEVSSLGYIATETAYRY-GKPWLVALKAVLEENIQFAVEYFAQEAPRLK-VMKPQGTYLIWLDFS  333 (392)
Confidence            3666676654322  35678888888888874 3567888889999999999999988 78887 447888888888876


Q ss_pred             cccccCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHH
Q 038416          322 VSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       322 ~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~  381 (387)
                      ...    .+..++...+++++||.+.||..|+.  ++++||+++.+++++++++++|+++++
T Consensus       334 ~~~----~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~e~i~~~l~~l~~~l~  391 (392)
T 3b1d_A          334 DYG----LTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAAPKSLVEEICKRIVCCLP  391 (392)
Confidence            421    13456777776678999999988863  578999998888999999999988775

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=100.00  E-value=1.2e-41  Score=318.29  Aligned_cols=348  Identities=14%  Similarity=0.111  Sum_probs=270.0

Q ss_pred             cccccCCCCCCCCCCC-CCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEE--cCChH
Q 038416            7 QETRHSPWPRRPLGVS-LLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYL--TLGCS   83 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~-~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~--~~g~~   83 (387)
                      .+.+++++.|.+.... ..+..+.+.+++.+........+|++..|.+++|+.+++++.+.++..+++++|++  |+|++
T Consensus        27 ~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~  106 (401)
T 7aat_A           27 NSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGT  106 (401)
T ss_dssp             CTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHH
T ss_pred             CCCceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcch
Confidence            3456888898763222 23356789999888876433457888889999999999999877776667899987  99999


Q ss_pred             HHHHHHHHhhc---CCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc---cCceEEEEeCC
Q 038416           84 QAIEISLSVLA---RPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD---ENTVAIVIINP  157 (387)
Q Consensus        84 ~a~~~~~~~l~---~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p  157 (387)
                      +++..++.++.   ++||+|+++.|+|.++...++  ..|.++..++++..+++.+|++.+++.++   ++++++++++|
T Consensus       107 ~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p  184 (401)
T 7aat_A          107 GSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFR--DAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACA  184 (401)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHH--HTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSS
T ss_pred             HHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHH--HcCCeeEeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCC
Confidence            99999887765   899999999999999999999  99999999998655567899997777664   57889999999


Q ss_pred             CCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCC--CCcccccc-CCCccEEEEecCcccccccccceEEEEe
Q 038416          158 GNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGST--PYVPMGVF-GSIVPVITLGSISKRWIVPGWRLGWLVT  234 (387)
Q Consensus       158 ~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~--~~~~~~~~-~~~~~~~~i~s~sK~~~~~g~r~G~i~~  234 (387)
                      |||||..++.+++++|+++|+++|+++|+||+|+.+.+++.  ...++..+ ...+++++++|+||.|+++|+|+||+++
T Consensus       185 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~RiG~l~~  264 (401)
T 7aat_A          185 HNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTV  264 (401)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEE
T ss_pred             CCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccccccCceEEEEE
Confidence            99999999999999999999999999999999999887542  11222222 3346789999999999999999999997


Q ss_pred             eCCCCcccchh----HHHHHHhhhh-ccCCcchHHHHHHHHHhhhcc-----HHHHHHHHHHHHHHHHHHHHHhhcCC--
Q 038416          235 SDPNGILQNSG----FVDSIKGCLN-AASHPVTFIQAAVPRIVDETN-----EAFFAKIIGLLKETADICYERIKEIP--  302 (387)
Q Consensus       235 ~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~--  302 (387)
                      ....     ++    +.+.+..... ...+++...+.++..++.+..     ..++.+..++++++++.+.+.|++++  
T Consensus       265 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~  339 (401)
T 7aat_A          265 ICRD-----AEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSS  339 (401)
T ss_dssp             ECSS-----HHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             EeCC-----HHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            4211     13    3344444322 344556677777777776421     35577888899999999999998872  


Q ss_pred             -CCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee-CChHhHHHHHHHHHHHH
Q 038416          303 -CITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA-AEPATLEDGLERIKAFC  380 (387)
Q Consensus       303 -~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~-~~~e~~~~~~~~l~~~~  380 (387)
                       ++. +..|.+++++|+.++          .+.+..+++++||.+.|+        +||+++ .++++++++++.|++++
T Consensus       340 ~~~~-~~~~~~~~~~~~~~~----------~~~~~~ll~~~gi~v~~~--------~Ris~~~~~~~~i~~~~~~l~~~~  400 (401)
T 7aat_A          340 HNWQ-HITDQIGMFCFTGLK----------PEQVERLTKEFSIYMTKD--------GRISVAGVASSNVGYLAHAIHQVT  400 (401)
T ss_dssp             SCCH-HHHHCCSSEEECCCC----------HHHHHHHHHHHCEECCTT--------CEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred             CCCc-eecCCcceEEecCCC----------HHHHHHHHHhCCEeccCC--------CeEEeccCChhhHHHHHHHHHHHh
Confidence             355 336788999997553          245567778889999775        599995 56777999999998875

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=100.00  E-value=3.9e-42  Score=324.03  Aligned_cols=348  Identities=17%  Similarity=0.131  Sum_probs=274.9

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHH--HHHhcCC--CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAV--VDALRTA--HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCS   83 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~--~~~~~~~--~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~   83 (387)
                      ...+++..|.|. ...+|.++.+.+++  .+++...  ...+|++..|..+||+.+++++      ++++++|++|+|++
T Consensus        33 ~~~i~~~~G~p~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~------~~~~~~i~~t~G~~  105 (427)
T 3ppl_A           33 NLKLDLTRGKPS-SEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLL------GVPVEQVLAGDASS  105 (427)
T ss_dssp             CCCEECCCCSCC-HHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHH------TSCGGGEEECSSCH
T ss_pred             CceEecCCCCCC-hHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHh------CCCcceEEEeCCcH
Confidence            345778888771 11123344566666  5555432  3468988889999999999999      56889999999999


Q ss_pred             HHH--HHHHHhhcC--C----------CCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc-cC
Q 038416           84 QAI--EISLSVLAR--P----------GANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD-EN  148 (387)
Q Consensus        84 ~a~--~~~~~~l~~--~----------g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-~~  148 (387)
                      +++  ..++.++++  +          ||+|+++.|+|.++...++  ..|.+++.++++.+   ++|+++|+++++ ++
T Consensus       106 ~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~--~~g~~~~~v~~~~~---g~d~~~l~~~l~~~~  180 (427)
T 3ppl_A          106 LNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITE--RFGFEMISVPMNED---GPDMDAVEELVKNPQ  180 (427)
T ss_dssp             HHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHH--HTTCEEEEEEEETT---EECHHHHHHHTTSTT
T ss_pred             HHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHH--HcCCEEEEeCCCCC---CCCHHHHHHHHhcCC
Confidence            999  588888876  6          8999999999999999999  99999999998643   489999999994 57


Q ss_pred             ceEEEEe-CCCCCccccCCHHHHHHHHHHH-HhcCcEEeecccccccccCCCCCc--ccccc----CCCccEEEEecCcc
Q 038416          149 TVAIVII-NPGNPCGNVFSYQHLQKIARTA-RNLGIIVIADEVYNHLAFGSTPYV--PMGVF----GSIVPVITLGSISK  220 (387)
Q Consensus       149 ~~~v~l~-~p~nptG~~~~~~~~~~l~~~~-~~~~~~li~D~~~~~~~~~~~~~~--~~~~~----~~~~~~~~i~s~sK  220 (387)
                      +++|+++ +||||||.++|.+++++|+++| +++|+++|+||+|+.+.|.+.+..  ++..+    +..+++++++||||
T Consensus       181 ~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK  260 (427)
T 3ppl_A          181 VKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSK  260 (427)
T ss_dssp             EEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTT
T ss_pred             CeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhh
Confidence            7887755 7799999999999999999999 999999999999999877765432  33332    24568999999999


Q ss_pred             cccccccceEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhc--cHHHHHHHHHHHHHHHHHHHHH
Q 038416          221 RWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDET--NEAFFAKIIGLLKETADICYER  297 (387)
Q Consensus       221 ~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~  297 (387)
                      . +++|+|+||+++++        ++++.+..... ...+++++.|.++..+++..  .+.++.+..+.++++++.+.+.
T Consensus       261 ~-~~~G~r~G~~~~~~--------~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  331 (427)
T 3ppl_A          261 I-TLAGAGVSFFLTSA--------ENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEI  331 (427)
T ss_dssp             T-SCTTSSCEEEECCH--------HHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c-cCcCccEEEEEcCH--------HHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9 89999999999875        78888877653 46778899999999988862  2466777788888888888777


Q ss_pred             hhc----CCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEc-CCccC-----CCCeEEEEeeC-Ch
Q 038416          298 IKE----IPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILP-GRTVG-----MKNWLRIAFAA-EP  366 (387)
Q Consensus       298 l~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~-g~~~~-----~~~~~Ri~~~~-~~  366 (387)
                      |++    ++++. +..|.+|+|+|++++..      +..++.. ++.++||.+.| |..|.     ..+++||+++. ++
T Consensus       332 L~~~l~~~~~~~-~~~p~~g~~~~~~~~~~------~~~~~~~-~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~~  403 (427)
T 3ppl_A          332 LDSRLAEYGVAQ-WTVPAGGYFISLDVVPG------TASRVAE-LAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLPPV  403 (427)
T ss_dssp             HHHHHGGGTCCE-ECCCSBSSCEEEECSTT------CHHHHHH-HHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCH
T ss_pred             HHHhcCCCCceE-EeCCCccEEEEEECCcc------hHHHHHH-HHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCCCH
Confidence            754    33455 44788999999998742      3455554 45778999999 55553     35899999976 78


Q ss_pred             HhHHHHHHHHHHHHHHhh
Q 038416          367 ATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       367 e~~~~~~~~l~~~~~~~~  384 (387)
                      +++++++++|.+++++..
T Consensus       404 ~~i~~~~~~l~~~l~~~~  421 (427)
T 3ppl_A          404 EELEVAMDGVATCVLLAA  421 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999998764

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=100.00  E-value=1.6e-40  Score=306.18  Aligned_cols=332  Identities=19%  Similarity=0.260  Sum_probs=269.0

Q ss_pred             cccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHH
Q 038416            7 QETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI   86 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~   86 (387)
                      .+.+++++.|.+    .+++++.+.+++.+.+..  ...|+. .+..++|+.+++++      ++++++|++|+|+++++
T Consensus        25 ~~~~idl~~~~~----~~~~~~~v~~a~~~~~~~--~~~y~~-~~~~~l~~~la~~~------~~~~~~i~~~~g~t~al   91 (361)
T 3ftb_A           25 GRELLDYSSNIN----PLGIPKSFLNNIDEGIKN--LGVYPD-VNYRRLNKSIENYL------KLKDIGIVLGNGASEII   91 (361)
T ss_dssp             ---CEETTCCCC----TTCSCHHHHTTHHHHHHG--GGSCCC-TTCHHHHHHHHHHH------TCCSCEEEEESSHHHHH
T ss_pred             CCCEEEecCCCC----CCCCCHHHHHHHHHHHHH--hcCCCC-ccHHHHHHHHHHHh------CCCcceEEEcCCHHHHH
Confidence            345566767654    577899999999998875  346754 57899999999999      46788999999999999


Q ss_pred             HHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCC
Q 038416           87 EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFS  166 (387)
Q Consensus        87 ~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  166 (387)
                      ..++.++    |+|+++.|+|.++...++  ..|.+++.++++.+.  .++++++++++++ ++++++++|+||||.++|
T Consensus        92 ~~~~~~~----d~vi~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~--~~~~~~l~~~l~~-~~~v~i~~p~nptG~~~~  162 (361)
T 3ftb_A           92 ELSISLF----EKILIIVPSYAEYEINAK--KHGVSVVFSYLDENM--CIDYEDIISKIDD-VDSVIIGNPNNPNGGLIN  162 (361)
T ss_dssp             HHHHTTC----SEEEEEESCCTHHHHHHH--HTTCEEEEEECCTTS--CCCHHHHHHHTTT-CSEEEEETTBTTTTBCCC
T ss_pred             HHHHHHc----CcEEEecCChHHHHHHHH--HcCCeEEEeecCccc--CCCHHHHHHhccC-CCEEEEeCCCCCCCCCCC
Confidence            9999988    899999999999999999  999999999986543  4677999999988 999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEE-eeCCCCcccchh
Q 038416          167 YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLV-TSDPNGILQNSG  245 (387)
Q Consensus       167 ~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~-~~~~~~~~~~~~  245 (387)
                      .+++++|+++|+++|+++|+|++|+++.++ .....+......++++++.|+||.++++|+|+||++ .++        +
T Consensus       163 ~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~--------~  233 (361)
T 3ftb_A          163 KEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-PSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNK--------E  233 (361)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECSSGGGTCC-TTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCH--------H
T ss_pred             HHHHHHHHHHhhhcCCEEEEECcchhhcCC-cccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCH--------H
Confidence            999999999999999999999999998876 333333334445678999999999999999999998 543        6


Q ss_pred             HHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccc
Q 038416          246 FVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML  325 (387)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~  325 (387)
                      +.+.++.... .++++++.+.++..+++.  ..++++..++++++++.+.+.|+++|++..+ .+..|.++|+.++.   
T Consensus       234 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~---  306 (361)
T 3ftb_A          234 IAAKIKAKQN-PWNINCFAEMAAINCLKD--TNYIEESLLWIKKERKRFIEELNKIGFIKRV-FSPHANFVLCRLEN---  306 (361)
T ss_dssp             HHHHHHTTSC-TTCSCHHHHHHHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHSSSEEEE-ECCSSSEEEEEESS---
T ss_pred             HHHHHHhhCC-CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCCcee-cCCCCeEEEEEcCC---
Confidence            8888876644 467888999999998885  5778899999999999999999998877612 34446678887764   


Q ss_pred             cCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHH
Q 038416          326 EDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       326 ~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~  381 (387)
                         .+..++...+.+ +||.+.||..|+.  ++++||+++ ++++++++++.|+++.+
T Consensus       307 ---~~~~~l~~~l~~-~gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~~~~  359 (361)
T 3ftb_A          307 ---ISGEKLYDSLLK-EDIVIRRCCNFIGLDDSFVRFAIK-DEKKNTKFLRALKGVEN  359 (361)
T ss_dssp             ---SCHHHHHHHHHT-TTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHHH
T ss_pred             ---CCHHHHHHHHHH-CCeEEeeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHHh
Confidence               145677777755 5999999988864  589999997 55566666666655544

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=100.00  E-value=1.1e-40  Score=321.24  Aligned_cols=348  Identities=19%  Similarity=0.230  Sum_probs=270.5

Q ss_pred             CCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhc-CC-CCCC-CCCEEEcCChHHHHHHHHHh-----hc
Q 038416           23 LLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRD-LP-YKLS-PEDVYLTLGCSQAIEISLSV-----LA   94 (387)
Q Consensus        23 ~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~-~~-~~~~-~~~i~~~~g~~~a~~~~~~~-----l~   94 (387)
                      +++ ++.+.+++.+.+...  ..|.+..|..++|+.+++++... .+ ..+. +++|++|+|+++++..++.+     ++
T Consensus       114 ~~~-~~~~v~a~~~~~~~~--~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~  190 (533)
T 3f6t_A          114 GLN-RDKVVAEWVNGAVAN--NYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLL  190 (533)
T ss_dssp             CCC-HHHHHHHHHHHHHTC--SCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSS
T ss_pred             CcC-CcHHHHHHHHHHHhC--CCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhcc
Confidence            555 556666666666542  23336679999999999999665 23 3343 47999999999999999998     78


Q ss_pred             CCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCC--CCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHH
Q 038416           95 RPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLP--EKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQK  172 (387)
Q Consensus        95 ~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~  172 (387)
                      ++||+|+++.|+|.++...+.  ..|.++..++++.  ++++.+|+++|++++++++++|++++|+||||.++|.+++++
T Consensus       191 ~~gd~Viv~~p~~~~~~~~~~--~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v~l~~p~NPtG~~~~~~~l~~  268 (533)
T 3f6t_A          191 KKGDKIAINEPIFTPYLRIPE--LKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSKEFDTNALNA  268 (533)
T ss_dssp             CTTCEEEEESSCCHHHHTSGG--GGGSEEEEECCCEETTTTSEECHHHHHHHSCTTEEEEEEESSCTTTCBCCCHHHHHH
T ss_pred             CCcCEEEEcCCCcHHHHHHHH--HcCCeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEEEEeCCCCCCccccCHHHHHH
Confidence            999999999999999999888  8899999888864  566889999999999989999999999999999999999999


Q ss_pred             HHHHHH-hcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHH--
Q 038416          173 IARTAR-NLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDS--  249 (387)
Q Consensus       173 l~~~~~-~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~--  249 (387)
                      |+++|+ ++|+++|+|++|+++.++.   .++.... .+++++++||||.++++|+|+||+++++.....   .+++.  
T Consensus       269 l~~la~~~~~~~li~De~y~~~~~~~---~~~~~~~-~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~---~li~~l~  341 (533)
T 3f6t_A          269 IKQAVEKNPKLMIISDEVYGAFVPNF---KSIYSVV-PYNTMLVYSYSKLFGCTGWRLGVIALNEKNVFD---DNIAHLD  341 (533)
T ss_dssp             HHHHHHHCTTCEEEEECTTGGGSTTC---CCHHHHS-GGGEEEEEESHHHHTCGGGCEEEEEEESSCHHH---HHHHTSC
T ss_pred             HHHHHHhCCCCEEEEcCCccccccCc---cCHhhcC-CCCEEEEecCcccCCCcccceEEEEECcHHHHH---HHHHhcc
Confidence            999999 6899999999999887642   2332222 367899999999999999999999998631000   02221  


Q ss_pred             ------------------------------HHhhh-hccCCcchHHHHH----HHHHhh-----hccHHHHHHHHHHHHH
Q 038416          250 ------------------------------IKGCL-NAASHPVTFIQAA----VPRIVD-----ETNEAFFAKIIGLLKE  289 (387)
Q Consensus       250 ------------------------------~~~~~-~~~~~~~~~~~~~----~~~~l~-----~~~~~~~~~~~~~~~~  289 (387)
                                                    ++... ..+.+++++.|.+    +..++.     ...+.++++..+.+++
T Consensus       342 ~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~  421 (533)
T 3f6t_A          342 KVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSE  421 (533)
T ss_dssp             HHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHH
T ss_pred             hhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHH
Confidence                                          12222 2345677778877    334453     2345778899999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccc-cc-C---------CCcHHHHHHHHHHhcCeEEEcCCccCC-CCe
Q 038416          290 TADICYERIKEIPCITCPVKPQGAMFVMVKLNVSM-LE-D---------IGDDLEFCLKLAKEESVIILPGRTVGM-KNW  357 (387)
Q Consensus       290 ~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~-~~-~---------~~~~~~~~~~ll~~~gi~v~~g~~~~~-~~~  357 (387)
                      +++.+.+.|. + ++. +..|.+++|+|+.++... .+ +         ..+..+++..+++++||.+.||..|+. .++
T Consensus       422 r~~~l~~~L~-~-~~~-~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~~~~  498 (533)
T 3f6t_A          422 RYDQLHDAMQ-A-PKD-ETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAKPGE  498 (533)
T ss_dssp             HHHHHHHHHT-C-CCC-CSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSSTTE
T ss_pred             HHHHHHHhcC-C-Ccc-ccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCCCCCE
Confidence            9999999997 6 566 447899999999875310 00 0         013557788888889999999998876 579


Q ss_pred             EEEEee-CChHhHHHHHHHHHHHHHHhhh
Q 038416          358 LRIAFA-AEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       358 ~Ri~~~-~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      +|++++ .+++++++++++|.++++++.+
T Consensus       499 iRls~a~~~~e~i~~~i~~L~~~l~~~~~  527 (533)
T 3f6t_A          499 LRVSQANLPTEDYALIGKQVLELLKEYYE  527 (533)
T ss_dssp             EEEESSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeeCCHHHHHHHHHHHHHHHHHHHH
Confidence            999997 5899999999999999988764

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=100.00  E-value=2.8e-41  Score=316.81  Aligned_cols=346  Identities=15%  Similarity=0.131  Sum_probs=273.7

Q ss_pred             cccCCCCCCCC-CCCCCCCcHHHHHHHHHHhcC-CCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEE--cCChHH
Q 038416            9 TRHSPWPRRPL-GVSLLSDSTVAEDAVVDALRT-AHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYL--TLGCSQ   84 (387)
Q Consensus         9 ~~~~~~~~~~~-~~~~~~~~~~v~~a~~~~~~~-~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~--~~g~~~   84 (387)
                      .+++++.|.+. .....++++.+.+++.+.... .....|++..+..++|+.+++++...++..+++++|++  |+|+++
T Consensus        31 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~  110 (412)
T 1ajs_A           31 RKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTG  110 (412)
T ss_dssp             TCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred             CceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHH
Confidence            46778888752 221245779999999998732 23457877789999999999999654554446789999  999999


Q ss_pred             HHHHHHH--hhcCCC-----CeEEEcCCCCcchHHHhhccCCCce-eeeeccCCCCCccCChhhHHHhhcc---CceEEE
Q 038416           85 AIEISLS--VLARPG-----ANILIPRPGYPLYEIHAAGSNNNLE-ARHYDLLPEKRWEVDLDGVEALADE---NTVAIV  153 (387)
Q Consensus        85 a~~~~~~--~l~~~g-----~~vl~~~p~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~v~  153 (387)
                      |+..+++  .++++|     |+|+++.|+|+++...+.  ..|.+ ++.+++.+++++.+|++++++++++   ++++++
T Consensus       111 a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~--~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~  188 (412)
T 1ajs_A          111 ALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFT--TAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVL  188 (412)
T ss_dssp             HHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHH--HTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEE
T ss_pred             HHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHH--HcCCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEE
Confidence            9999965  445789     999999999999999999  89999 9999885446678999999998864   567888


Q ss_pred             EeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCC--CCCccccccC-CCccEEEEecCcccccccccceE
Q 038416          154 IINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS--TPYVPMGVFG-SIVPVITLGSISKRWIVPGWRLG  230 (387)
Q Consensus       154 l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~--~~~~~~~~~~-~~~~~~~i~s~sK~~~~~g~r~G  230 (387)
                      +++|+||||.++|.+++++|+++|+++|+++|+||+|+++.+++  ....++..+. ..++++++.|+||.++++|+|+|
T Consensus       189 ~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG  268 (412)
T 1ajs_A          189 HACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVG  268 (412)
T ss_dssp             ESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEE
T ss_pred             ECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccccCCCCcceE
Confidence            89999999999999999999999999999999999999987764  1222333232 23578999999999999999999


Q ss_pred             EEEe---eCCCCcccchh----HHHHHHhhh-hccCCcchHHHHHHHHHhhhcc-----HHHHHHHHHHHHHHHHHHHHH
Q 038416          231 WLVT---SDPNGILQNSG----FVDSIKGCL-NAASHPVTFIQAAVPRIVDETN-----EAFFAKIIGLLKETADICYER  297 (387)
Q Consensus       231 ~i~~---~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~  297 (387)
                      |+++   ++        +    +++.+.... ....+++++.+.++..+|+...     +.++++..++++++++.+.+.
T Consensus       269 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  340 (412)
T 1ajs_A          269 NLTVVAKEP--------DSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRAR  340 (412)
T ss_dssp             EEEEECSSH--------HHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCH--------HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998   43        4    444444422 2334468889999988888642     357788889999999999999


Q ss_pred             hhcCC---CCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee-CChHhHHHHH
Q 038416          298 IKEIP---CITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA-AEPATLEDGL  373 (387)
Q Consensus       298 l~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~-~~~e~~~~~~  373 (387)
                      |++++   ++.+. .|.+|+++|+.++          .+++..+++++||.+.|+        +||+++ .+++++++++
T Consensus       341 L~~~~~~~~~~~~-~~~~~~~~~~~~~----------~~~~~~~l~~~gv~v~~~--------~Ris~~~~~~~~i~~~~  401 (412)
T 1ajs_A          341 LEALKTPGTWNHI-TDQIGMFSFTGLN----------PKQVEYLINQKHIYLLPS--------GRINMCGLTTKNLDYVA  401 (412)
T ss_dssp             HHHTTCSSCCHHH-HHCCSSEEECCCC----------HHHHHHHHHTTCEECCTT--------SEEEGGGCCTTTHHHHH
T ss_pred             HHhhCCCCCeeEE-cCCCceEEEeCCC----------HHHHHHHHHhCCEEecCC--------cEEEeeeCCHHHHHHHH
Confidence            99874   36633 6778889887553          356666778889999875        599997 4899999999


Q ss_pred             HHHHHHHHHh
Q 038416          374 ERIKAFCQRH  383 (387)
Q Consensus       374 ~~l~~~~~~~  383 (387)
                      ++|+++++++
T Consensus       402 ~~l~~~l~~~  411 (412)
T 1ajs_A          402 TSIHEAVTKI  411 (412)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhc
Confidence            9999998764

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=100.00  E-value=1.5e-41  Score=319.69  Aligned_cols=344  Identities=20%  Similarity=0.243  Sum_probs=275.1

Q ss_pred             cccCCCCCCCCCCCC---CCCcHHHHHHHH--HHhcCC-CCCCC-CCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCC
Q 038416            9 TRHSPWPRRPLGVSL---LSDSTVAEDAVV--DALRTA-HYNCY-SPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLG   81 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~---~~~~~~v~~a~~--~~~~~~-~~~~y-~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g   81 (387)
                      ..++++.|.|    +   +|.++.+.+++.  +.+... ....| ++..|..+||+.+++++      ++++++|++|+|
T Consensus        26 ~~i~l~~g~p----~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~------~~~~~~i~~t~G   95 (423)
T 3ez1_A           26 LNLNMQRGQP----ADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYL------DVKAENVLVWNN   95 (423)
T ss_dssp             CCEESCCCCC----CHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHT------TSCGGGEEECSS
T ss_pred             ceEecCCCCC----ChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHh------CCChhhEEEeCC
Confidence            4678888887    6   788888998886  555432 23688 77789999999999999      568899999999


Q ss_pred             hHHHHH--HHHHhhcC--C---------CCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhh--c
Q 038416           82 CSQAIE--ISLSVLAR--P---------GANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALA--D  146 (387)
Q Consensus        82 ~~~a~~--~~~~~l~~--~---------g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~--~  146 (387)
                      +++++.  .++.++++  +         ||+|+++.|+|.++...++  ..|.+++.++++.+   ++|+++|++++  .
T Consensus        96 ~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~--~~g~~~~~v~~~~~---g~d~~~l~~~l~~~  170 (423)
T 3ez1_A           96 SSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQ--TLGFELLTVDMQSD---GPDVDAVERLAGTD  170 (423)
T ss_dssp             CHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHH--HHTCEEEEEEEETT---EECHHHHHHHHHSC
T ss_pred             cHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHH--HcCCEEEeccCCCC---CCCHHHHHHHHhhC
Confidence            999998  88888877  7         5999999999999999999  99999999998643   58999999999  5


Q ss_pred             cCceEEEEe-CCCCCccccCCHHHHHHHHHHH-HhcCcEEeecccccccccCC-C--CCcccccc----CCCccEEEEec
Q 038416          147 ENTVAIVII-NPGNPCGNVFSYQHLQKIARTA-RNLGIIVIADEVYNHLAFGS-T--PYVPMGVF----GSIVPVITLGS  217 (387)
Q Consensus       147 ~~~~~v~l~-~p~nptG~~~~~~~~~~l~~~~-~~~~~~li~D~~~~~~~~~~-~--~~~~~~~~----~~~~~~~~i~s  217 (387)
                      +++++|+++ +|+||||.+++.+++++|+++| +++|+++|+||+|+.+.+.+ .  ...++..+    +..+++++++|
T Consensus       171 ~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S  250 (423)
T 3ez1_A          171 PSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFAS  250 (423)
T ss_dssp             TTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEE
T ss_pred             CCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeC
Confidence            678888654 7899999999999999999999 99999999999999765544 2  22233332    34568999999


Q ss_pred             CcccccccccceEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhh--cc-HHHHHHHHHHHHHHHHH
Q 038416          218 ISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDE--TN-EAFFAKIIGLLKETADI  293 (387)
Q Consensus       218 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~--~~-~~~~~~~~~~~~~~~~~  293 (387)
                      +||. +++|+|+||+++++        ++++.+..... ...+++++.|.++..+++.  .. +.++.+..+.++++++.
T Consensus       251 ~sK~-~~~G~r~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  321 (423)
T 3ez1_A          251 TSKI-TFAGAGLGFVASSE--------DNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRA  321 (423)
T ss_dssp             STTT-SCSSSSCEEEEECH--------HHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             chhh-ccCCcceEEEEeCH--------HHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence            9999 78999999999976        78888877654 5577888999998888876  21 45677777777777777


Q ss_pred             HHHHhhc----CC-CCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEc-CCccC-----CCCeEEEEe
Q 038416          294 CYERIKE----IP-CITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILP-GRTVG-----MKNWLRIAF  362 (387)
Q Consensus       294 ~~~~l~~----~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~-g~~~~-----~~~~~Ri~~  362 (387)
                      +.+.|.+    ++ ++. +..|.+|+|+|+.++..      +...+ ..+++++||.+.| |..|.     ..+++||++
T Consensus       322 l~~~l~~~l~~~~~~~~-~~~p~~g~~~~~~~~~~------~~~~~-~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~  393 (423)
T 3ez1_A          322 VDEVLRAELGEGGEYAT-WTLPKGGYFISLDTAEP------VADRV-VKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAP  393 (423)
T ss_dssp             HHHHHHHHHTTTTSSEE-ECCCSBSSCEEEEESSS------CHHHH-HHHHHHTTEECCCTTTTSSTTCCSSSCEEEECC
T ss_pred             HHHHHHHhcCcCCCceE-EeCCCccEEEEEECCCC------cHHHH-HHHHHHCCcEEecCcccccCCCCCCCCeEEEEc
Confidence            7776654    42 255 44788999999998742      33444 4556788999999 66664     258999999


Q ss_pred             eC-ChHhHHHHHHHHHHHHHHhh
Q 038416          363 AA-EPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       363 ~~-~~e~~~~~~~~l~~~~~~~~  384 (387)
                      +. +++++++++++|++++++..
T Consensus       394 ~~~~~~~i~~~~~~l~~~l~~~~  416 (423)
T 3ez1_A          394 TRPPVEEVRTAMQVVAACIRLAT  416 (423)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHH
Confidence            75 89999999999999998765

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=100.00  E-value=6.1e-41  Score=314.99  Aligned_cols=355  Identities=19%  Similarity=0.233  Sum_probs=266.7

Q ss_pred             ccccCCCCCCCCCCCCCCC--cHHHHHHHHHHhcCCC----CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCC
Q 038416            8 ETRHSPWPRRPLGVSLLSD--STVAEDAVVDALRTAH----YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLG   81 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~--~~~v~~a~~~~~~~~~----~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g   81 (387)
                      ..+++++.|.|    +..+  .+.+.+++.+.+.+..    ...|++..|..++|+.+++++.+.++.++++++|++|+|
T Consensus        31 ~~~i~l~~g~p----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G  106 (417)
T 3g7q_A           31 PGAIMLGGGNP----AHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNG  106 (417)
T ss_dssp             -CCEECSCCCC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESC
T ss_pred             CCceEecCcCC----CCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCC
Confidence            45677878876    3322  2667777777765431    136888889999999999999888888889999999999


Q ss_pred             hHHHHHHHHHhhcCCCC-----eEEEc-CCCCcchHHHhh----ccCCCceeeeeccCCCCCccCChhhHHHhhccCceE
Q 038416           82 CSQAIEISLSVLARPGA-----NILIP-RPGYPLYEIHAA----GSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVA  151 (387)
Q Consensus        82 ~~~a~~~~~~~l~~~g~-----~vl~~-~p~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  151 (387)
                      +++++..++++++++||     +|+++ .|+|+++...+.    +...+..+..++.. ..++.+|+++++  +++++++
T Consensus       107 ~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~l~--~~~~~~~  183 (417)
T 3g7q_A          107 SQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEG-QFKYHVDFEHLH--IGEETGM  183 (417)
T ss_dssp             HHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGG-EEEEECCGGGCC--CCTTEEE
T ss_pred             cHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCc-ccccccCHHHhc--cccCceE
Confidence            99999999999999987     89997 999998876543    00122333333321 124568999887  6778999


Q ss_pred             EEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEE
Q 038416          152 IVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGW  231 (387)
Q Consensus       152 v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~  231 (387)
                      +++++|+||||.++|.+++++|+++|++||+++|+|++|+.+.. +....... ....++++++.|+|| ++++|+|+||
T Consensus       184 v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~-~~~~~~~~-~~~~~~~i~~~s~sK-~~~~G~r~G~  260 (417)
T 3g7q_A          184 ICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFP-GIIFSEAR-PLWNPNIILCMSLSK-LGLPGSRCGI  260 (417)
T ss_dssp             EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTT-CCBCSCCC-CCCCTTEEEEEESGG-GTCTTSCCEE
T ss_pred             EEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccc-cccccccc-cCCCCCEEEEEechh-ccCCCcceEE
Confidence            99999999999999999999999999999999999999985321 11111111 122467899999999 5999999999


Q ss_pred             EEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccH-HHHHH-HHHHHHHHHHHHHHHhhc-CCC--CC
Q 038416          232 LVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNE-AFFAK-IIGLLKETADICYERIKE-IPC--IT  305 (387)
Q Consensus       232 i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~-~~~~~-~~~~~~~~~~~~~~~l~~-~~~--~~  305 (387)
                      +++++        ++++.+..... ...+++++.+.++..+++.... ....+ ..+.++++++.+.+.|++ +++  +.
T Consensus       261 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  332 (417)
T 3g7q_A          261 IIAND--------KTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCL  332 (417)
T ss_dssp             EECCH--------HHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCE
T ss_pred             EEeCH--------HHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCce
Confidence            99865        78888877654 4567788999999888876442 22333 566778888888888876 554  55


Q ss_pred             CCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC---------CCeEEEEeeCChHhHHHHHHHH
Q 038416          306 CPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM---------KNWLRIAFAAEPATLEDGLERI  376 (387)
Q Consensus       306 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---------~~~~Ri~~~~~~e~~~~~~~~l  376 (387)
                       +..|.+|+++|+.++...    .+..++...+ .++||.+.||..|..         .+++||+++.+++++++++++|
T Consensus       333 -~~~~~~g~~~~~~~~~~~----~~~~~l~~~l-~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~~~~~i~~~~~~l  406 (417)
T 3g7q_A          333 -IHKPEGAIFLWLWFKDLP----ITTELLYQRL-KARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVPEPDKIEAGVKIL  406 (417)
T ss_dssp             -EECCCBSSEEEEECTTCS----SCHHHHHHHH-HHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCSCHHHHHHHHHHH
T ss_pred             -eeCCCcceEEEEEcCCCC----CCHHHHHHHH-HHCCEEEECchhhCCCCccccccCCCeEEEEecCCHHHHHHHHHHH
Confidence             446888999999887421    1456676666 677999999988754         4689999988999999999999


Q ss_pred             HHHHHHhhhc
Q 038416          377 KAFCQRHAKK  386 (387)
Q Consensus       377 ~~~~~~~~~~  386 (387)
                      +++++++.++
T Consensus       407 ~~~l~~~~~~  416 (417)
T 3g7q_A          407 AEEIERAWRE  416 (417)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999887653

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=100.00  E-value=3.7e-41  Score=315.95  Aligned_cols=345  Identities=14%  Similarity=0.134  Sum_probs=269.8

Q ss_pred             cccCCCCCCCCC-CCCCCCcHHHHHHHHH-HhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEE--cCChHH
Q 038416            9 TRHSPWPRRPLG-VSLLSDSTVAEDAVVD-ALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYL--TLGCSQ   84 (387)
Q Consensus         9 ~~~~~~~~~~~~-~~~~~~~~~v~~a~~~-~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~--~~g~~~   84 (387)
                      .+++++.|.+.. ....++++.+.+++.+ .+......+|++..+..++|+.+++++...++..+++++|++  |+|+++
T Consensus        30 ~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~  109 (412)
T 1yaa_A           30 TKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTG  109 (412)
T ss_dssp             SCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred             CeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHh
Confidence            456788887521 2223678999999999 886544557877789999999999999765554456889999  999999


Q ss_pred             HHHHHH--HhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccC---ceEEEEeCCCC
Q 038416           85 AIEISL--SVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADEN---TVAIVIINPGN  159 (387)
Q Consensus        85 a~~~~~--~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~v~l~~p~n  159 (387)
                      ++..++  ..++++||+|+++.|+|+++...++  ..|.+++.+++...+++.+|+++++++++++   +.++++++|+|
T Consensus       110 a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~n  187 (412)
T 1yaa_A          110 ALHISAKFFSKFFPDKLVYLSKPTWANHMAIFE--NQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHN  187 (412)
T ss_dssp             HHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHH--TTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCT
T ss_pred             HHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHH--HcCceEEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCC
Confidence            999984  3345699999999999999999999  9999999998732335789999999988653   44555699999


Q ss_pred             CccccCCHHHHHHHHHHHHhcCcEEeecccccccccCC--CCCccccccC-CCc---cEEEEecCcccccccccceEEEE
Q 038416          160 PCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS--TPYVPMGVFG-SIV---PVITLGSISKRWIVPGWRLGWLV  233 (387)
Q Consensus       160 ptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~--~~~~~~~~~~-~~~---~~~~i~s~sK~~~~~g~r~G~i~  233 (387)
                      |||.++|.+++++|+++|+++|+++|+|++|+++.+++  ....++..+. ...   ++++++|+||.|+++|+|+||++
T Consensus       188 PtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~GlriG~~~  267 (412)
T 1yaa_A          188 PTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFH  267 (412)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcCCcceEEE
Confidence            99999999999999999999999999999999887754  1122232221 123   68999999999998899999998


Q ss_pred             --e-----eCCCCcccchh----HHHHHHhhh-hccCCcchHHHHHHHHHhhhcc-----HHHHHHHHHHHHHHHHHHHH
Q 038416          234 --T-----SDPNGILQNSG----FVDSIKGCL-NAASHPVTFIQAAVPRIVDETN-----EAFFAKIIGLLKETADICYE  296 (387)
Q Consensus       234 --~-----~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~  296 (387)
                        +     ++        +    +++++.... ....+++.+.+.++..+++...     +.++++..++++++++.+.+
T Consensus       268 ~~~~~~~~~~--------~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  339 (412)
T 1yaa_A          268 LALTKQAQNK--------TIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRD  339 (412)
T ss_dssp             EECCSCTTHH--------HHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCCH--------HHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              6     32        4    666666533 3345668889999988888642     35788889999999999999


Q ss_pred             HhhcCC---CCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeC-ChHhHHHH
Q 038416          297 RIKEIP---CITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAA-EPATLEDG  372 (387)
Q Consensus       297 ~l~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~-~~e~~~~~  372 (387)
                      .|++++   ++.+ ..|.+|+++|+.++         ... +..+++++||.+.+        ++||+++. ++++++++
T Consensus       340 ~L~~~~~~~~~~~-~~~~~~~~~~~~~~---------~~~-~~~~l~~~gi~v~~--------~~Ris~~~~~~~~i~~~  400 (412)
T 1yaa_A          340 HLVKLGTPGNWDH-IVNQCGMFSFTGLT---------PQM-VKRLEETHAVYLVA--------SGRASIAGLNQGNVEYV  400 (412)
T ss_dssp             HHHHHTCSSCCTH-HHHCCSSEEECCCC---------HHH-HHHHHHHHCEECCT--------TSEEEGGGCCTTTHHHH
T ss_pred             HHHhhCCCCCeee-eccCceEEEeeCCC---------HHH-HHHHHHhCCEEecc--------CcEEEEccCCHhHHHHH
Confidence            999874   3773 36778888886553         233 46677788999877        47999975 89999999


Q ss_pred             HHHHHHHHHH
Q 038416          373 LERIKAFCQR  382 (387)
Q Consensus       373 ~~~l~~~~~~  382 (387)
                      +++|+++++.
T Consensus       401 ~~~l~~~~~~  410 (412)
T 1yaa_A          401 AKAIDEVVRF  410 (412)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998864

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=100.00  E-value=3.3e-40  Score=312.55  Aligned_cols=355  Identities=21%  Similarity=0.269  Sum_probs=272.8

Q ss_pred             ccc-CCCCCCCCCCCCCCCc--HHHHHHHHHHhcC-------CC----CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCC
Q 038416            9 TRH-SPWPRRPLGVSLLSDS--TVAEDAVVDALRT-------AH----YNCYSPTLGVPSARRGIADYLNRDLPYKLSPE   74 (387)
Q Consensus         9 ~~~-~~~~~~~~~~~~~~~~--~~v~~a~~~~~~~-------~~----~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~   74 (387)
                      .++ ++..|.|    +.+++  +.+.+++.+.+.+       ..    ...|++..+..++|+.+++|+.+.++.+++++
T Consensus        32 ~~i~~l~~g~p----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~  107 (444)
T 3if2_A           32 QPVNMLGGGNP----AKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSE  107 (444)
T ss_dssp             SCCEECSCCCC----CCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGG
T ss_pred             hhhhccCCCCC----CcccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHH
Confidence            455 7777777    33222  5566777766655       21    24688888999999999999998888888999


Q ss_pred             CEEEcCChHHHHHHHHHhhcCCCC--------------eEEEc-CCCCcchHHH------hhccCCCceeeeeccCCCC-
Q 038416           75 DVYLTLGCSQAIEISLSVLARPGA--------------NILIP-RPGYPLYEIH------AAGSNNNLEARHYDLLPEK-  132 (387)
Q Consensus        75 ~i~~~~g~~~a~~~~~~~l~~~g~--------------~vl~~-~p~~~~~~~~------~~~~~~g~~~~~~~~~~~~-  132 (387)
                      +|++|+|+++++..++.+++++||              +|+++ .|+|..+...      +.  ..|..+..++++.++ 
T Consensus       108 ~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g  185 (444)
T 3if2_A          108 NIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFA--AVLPHIDEVTHDGEEG  185 (444)
T ss_dssp             GEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEE--ECCCEEEEEEETTEEE
T ss_pred             HEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccchhh--ccCceEEecccccccC
Confidence            999999999999999999998887              78875 9999988763      33  567777777765322 


Q ss_pred             --CccCChhhHHHh---hccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccC
Q 038416          133 --RWEVDLDGVEAL---ADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFG  207 (387)
Q Consensus       133 --~~~~~~~~l~~~---~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~  207 (387)
                        ++.+|+++|+++   +++++++|++++|+||||.++|.+++++|+++|+++|+++|+|++|+.+.. +....... ..
T Consensus       186 ~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~-~~~~~~~~-~~  263 (444)
T 3if2_A          186 FFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFP-NIIYSDAH-LN  263 (444)
T ss_dssp             EEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTT-CCBCSCCC-CC
T ss_pred             ccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCccc-cccccccc-cc
Confidence              357899999998   677899999999999999999999999999999999999999999985321 11111111 12


Q ss_pred             CCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhcc-HHHHHH-HH
Q 038416          208 SIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETN-EAFFAK-II  284 (387)
Q Consensus       208 ~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~~~~~~-~~  284 (387)
                      ..++++++.|+||. +++|+|+||+++++        ++++.+..... ...+++++.+.++..+++... .....+ ..
T Consensus       264 ~~~~~i~~~S~sK~-~~~G~r~G~~~~~~--------~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  334 (444)
T 3if2_A          264 WDNNTILCFSLSKI-GLPGMRTGIIVADA--------KVIEAVSAMNAVVNLAPTRFGAAIATPLVANDRIKQLSDNEIK  334 (444)
T ss_dssp             CCTTEEEEEESTTT-TCGGGCCEEEECCH--------HHHHHHHHHHHHHHSSCCCHHHHHHHHHHHTSHHHHHHHHTHH
T ss_pred             CCCCEEEEechhhc-cCCCCceEEEEECH--------HHHHHHHHHHHhccCCCChHHHHHHHHHHHcCchhHHHHHHHH
Confidence            24578999999997 89999999999865        78888876643 456778889999888887643 222333 56


Q ss_pred             HHHHHHHHHHHHHhhc-CCC--CCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCC------
Q 038416          285 GLLKETADICYERIKE-IPC--ITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMK------  355 (387)
Q Consensus       285 ~~~~~~~~~~~~~l~~-~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~------  355 (387)
                      +.++++++.+.+.|++ +++  +. +..|.+|+++|+.++...    .+..++...+ .++||.+.||..|...      
T Consensus       335 ~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~g~~~~~~~~~~~----~~~~~l~~~l-~~~gi~v~~g~~~~~~~~~~~~  408 (444)
T 3if2_A          335 PFYQKQATLAVKLLKQALGDYPLM-IHKPEGAIFLWLWFKDLP----ISTLDLYERL-KAKGTLIVPSEYFFPGVDVSDY  408 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSSSEE-EECCCBSSEEEEEETTCS----SCHHHHHHHH-HHTTEECEEGGGSCTTCCCTTC
T ss_pred             HHHHHHHHHHHHHHHHhcccCCce-EecCCccEEEEEEcCCCC----CCHHHHHHHH-HHCCeEEecchhhcCCCCCccc
Confidence            6777788888887766 554  44 336788999999886421    1456676665 6779999999887532      


Q ss_pred             ----CeEEEEeeCChHhHHHHHHHHHHHHHHhhhc
Q 038416          356 ----NWLRIAFAAEPATLEDGLERIKAFCQRHAKK  386 (387)
Q Consensus       356 ----~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~~~  386 (387)
                          +++||+++.+++++++++++|+++++++.++
T Consensus       409 ~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~~~~~  443 (444)
T 3if2_A          409 QHAHECIRMSIAADEQTLIDGIKVIGEVVRELYDN  443 (444)
T ss_dssp             SGGGSEEEEESSSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHHcc
Confidence                6899999889999999999999999887653

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=100.00  E-value=5.4e-40  Score=316.40  Aligned_cols=351  Identities=16%  Similarity=0.223  Sum_probs=264.6

Q ss_pred             cCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHH-hhcCCCCC---CCCCEEEcCChHHHH
Q 038416           11 HSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYL-NRDLPYKL---SPEDVYLTLGCSQAI   86 (387)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~-~~~~~~~~---~~~~i~~~~g~~~a~   86 (387)
                      ++.+.|.+    ++ +++.+.+++.+.+..   .+|++..|..++|+.+++++ .++++.+.   ++++|++|+|+++++
T Consensus       107 i~l~~g~~----~~-~~~~~~~al~~~~~~---~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal  178 (546)
T 2zy4_A          107 LSYVRDQL----GL-DPAAFLHEMVDGILG---CNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAM  178 (546)
T ss_dssp             HHHHHHTS----CC-CHHHHHHHHHHHHHT---CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHH
T ss_pred             hecccCCC----CC-CChHHHHHHHHhhhc---CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHH
Confidence            44444444    45 345666777776642   47998888899999877755 44443322   468999999999999


Q ss_pred             HHHHHh-----hcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCc
Q 038416           87 EISLSV-----LARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPC  161 (387)
Q Consensus        87 ~~~~~~-----l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~npt  161 (387)
                      ..++.+     ++++||+|+++.|+|++|...+.....|.+++.++++++++|.+|+++|++++++++++|++++|+|||
T Consensus       179 ~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~p~NPt  258 (546)
T 2zy4_A          179 AYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDPAIKIFFCVNPSNPP  258 (546)
T ss_dssp             HHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGSTTEEEEEEESSCSSS
T ss_pred             HHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCCCCeEEEEECCCCCC
Confidence            999988     578999999999999999887551135688888888777778899999999888889999999999999


Q ss_pred             cccCCHHHHHHHHHHH--HhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCC
Q 038416          162 GNVFSYQHLQKIARTA--RNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNG  239 (387)
Q Consensus       162 G~~~~~~~~~~l~~~~--~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~  239 (387)
                      |.+++.+++++|+++|  +++|++||+||+|+++.++   ..++.... .++++++.||||.++++|+|+||+++++.  
T Consensus       259 G~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~---~~s~~~~~-~~~~i~~~S~SK~~g~~GlRiG~~~~~~~--  332 (546)
T 2zy4_A          259 SVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD---FQSLFAIC-PENTLLVYSFSKYFGATGWRLGVVAAHQQ--  332 (546)
T ss_dssp             CBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT---CCCHHHHC-GGGEEEEEESTTTTTCGGGCEEEEEEESS--
T ss_pred             CccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc---CcCHHHhC-CCCEEEEEeCccccCCCCcceEEEEECCH--
Confidence            9999999999999999  7899999999999988753   22333332 35789999999999999999999999762  


Q ss_pred             cccchhHHHHHHhh-------------h------------------------hccCCcchHHHHHH-----HHHhhhccH
Q 038416          240 ILQNSGFVDSIKGC-------------L------------------------NAASHPVTFIQAAV-----PRIVDETNE  277 (387)
Q Consensus       240 ~~~~~~~~~~~~~~-------------~------------------------~~~~~~~~~~~~~~-----~~~l~~~~~  277 (387)
                           ++++.+.+.             .                        ..+.+.+.+.|.++     ..++.+ .+
T Consensus       333 -----~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~-~~  406 (546)
T 2zy4_A          333 -----NVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDE-AD  406 (546)
T ss_dssp             -----CHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCT-TC
T ss_pred             -----HHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhc-cH
Confidence                 155544210             0                        12235666777764     233432 35


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccc--ccC---------CCcHHHHHHHHHHhcCeEE
Q 038416          278 AFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSM--LED---------IGDDLEFCLKLAKEESVII  346 (387)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~---------~~~~~~~~~~ll~~~gi~v  346 (387)
                      .+..+..+.++++++.+.+.|. + ++. ...+.+++|+|++++...  .++         ..++.+++.+++.++||.+
T Consensus       407 ~~~~~~r~~~~~r~~~l~~~L~-~-~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~v  483 (546)
T 2zy4_A          407 EYKHTLKQLIRRRETTLYRELG-M-PPL-RDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVL  483 (546)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGT-S-SCC-CCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC-C-Ccc-cCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEEE
Confidence            6778888889999998888885 4 344 336788999999875200  000         0023455667778889999


Q ss_pred             EcCCccCC-CCeEEEEeeC-ChHhHHHHHHHHHHHHHHhh
Q 038416          347 LPGRTVGM-KNWLRIAFAA-EPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       347 ~~g~~~~~-~~~~Ri~~~~-~~e~~~~~~~~l~~~~~~~~  384 (387)
                      .||..|+. .+++||+++. +++++++++++|+++++++.
T Consensus       484 ~pG~~F~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~~  523 (546)
T 2zy4_A          484 LPGRGFGSNRPSGRASLANLNEYEYAAIGRALRKMADELY  523 (546)
T ss_dssp             EESSCTTCSSCEEEEESSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             eCccccCCCCCeEEEEeccCCHHHHHHHHHHHHHHHHHHH
Confidence            99999876 4689999976 78999999999999987765

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=100.00  E-value=1.7e-39  Score=300.18  Aligned_cols=330  Identities=18%  Similarity=0.224  Sum_probs=266.2

Q ss_pred             cCCCCCCCCCCCCCCCcHHHHHHHHHHhcCC--CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416           11 HSPWPRRPLGVSLLSDSTVAEDAVVDALRTA--HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      ++++.|.+    +++.++.+.+++.+.+...  ....|+...+ .++|+.+++++.+.++.++++++|++|+|+++++..
T Consensus        33 idl~~~~~----~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~  107 (369)
T 3cq5_A           33 IRLNTNEN----PYPPSEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQ  107 (369)
T ss_dssp             EECSSCCC----CSCCCHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHH
T ss_pred             eeccCCCC----CCCCCHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHH
Confidence            44555444    5788999999999988642  2356776545 799999999998877777788999999999999999


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCccccCCH
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~  167 (387)
                      ++.+++++||+|+++.|+|+++...++  ..|.+++.++.+  +++.+|++++++++++ ++++|++++|+||||.++|.
T Consensus       108 ~~~~l~~~gd~Vl~~~~~y~~~~~~~~--~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~  183 (369)
T 3cq5_A          108 LLQAFGGPGRTALGFQPSYSMHPILAK--GTHTEFIAVSRG--ADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSL  183 (369)
T ss_dssp             HHHHHCSTTCEEEEEESSCTHHHHHHH--HTTCEEEEEECC--TTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCH
T ss_pred             HHHHhcCCCCEEEEcCCChHHHHHHHH--HcCCEEEEecCC--cCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCH
Confidence            999999999999999999999999999  899999998864  4567899999999987 88999999999999999997


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCc-cEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIV-PVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      +++.++++   .+++++|+|++|+.+.+.   ...+...+..+ +++++.|+||.++++|+|+||+++++        ++
T Consensus       184 ~~l~~l~~---~~~~~li~De~~~~~~~~---~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~--------~~  249 (369)
T 3cq5_A          184 DDVERIIN---VAPGIVIVDEAYAEFSPS---PSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANP--------AF  249 (369)
T ss_dssp             HHHHHHHH---HCSSEEEEECTTGGGCCS---CCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECT--------HH
T ss_pred             HHHHHHHH---hCCCEEEEECCchhhcCC---cchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCH--------HH
Confidence            76666666   455999999999987643   11122223334 78999999999988999999999976        67


Q ss_pred             HHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccccc
Q 038416          247 VDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE  326 (387)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~  326 (387)
                      ++.+..... .++++++.+.++..+++.  .+++++..++++++++.+.+.|++. ++...  +..++|+|++++.    
T Consensus       250 ~~~l~~~~~-~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~~----  319 (369)
T 3cq5_A          250 IDAVMLVRL-PYHLSALSQAAAIVALRH--SADTLGTVEKLSVERVRVAARLEEL-GYAVV--PSESNFVFFGDFS----  319 (369)
T ss_dssp             HHHHHTTSC-TTCSCHHHHHHHHHHHHT--HHHHHTHHHHHHHHHHHHHHHHHHH-TCEEE--CCSSSEEEEECCS----
T ss_pred             HHHHHHcCC-CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhC-CCEEC--CCCCeEEEEECCC----
Confidence            777776543 356888899988888875  4567888899999999999999885 67733  4556788887752    


Q ss_pred             CCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHH
Q 038416          327 DIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       327 ~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~  381 (387)
                         +..++...+ .++||.+.||   +.++++||+++ ++++++++++.|+++++
T Consensus       320 ---~~~~l~~~l-~~~gi~v~~~---~~~~~iRis~~-~~~~i~~~~~~l~~~~~  366 (369)
T 3cq5_A          320 ---DQHAAWQAF-LDRGVLIRDV---GIAGHLRTTIG-VPEENDAFLDAAAEIIK  366 (369)
T ss_dssp             ---SHHHHHHHH-HHTTEECBCC---SCTTEEEEECC-CHHHHHHHHHHHHHHHT
T ss_pred             ---CHHHHHHHH-HHCCEEEEEC---CCCCeEEEEeC-CHHHHHHHHHHHHHHHh
Confidence               456676666 5779999998   23689999998 78999999999988764

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=100.00  E-value=8e-41  Score=312.05  Aligned_cols=346  Identities=18%  Similarity=0.179  Sum_probs=266.8

Q ss_pred             cccCCCCCCCCCCCC--CCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEE--cCChHH
Q 038416            9 TRHSPWPRRPLGVSL--LSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYL--TLGCSQ   84 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~--~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~--~~g~~~   84 (387)
                      .+++++.|.+ .+++  .++++.+.+++.+.+......+|++..+..++|+++++++....+..+++++|++  |+|+++
T Consensus        27 ~~i~l~~g~~-~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~  105 (396)
T 2q7w_A           27 GKINLGIGVY-KDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTG  105 (396)
T ss_dssp             -CEESSCCSC-CCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHH
T ss_pred             Cceecccccc-cCCCCCccCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchh
Confidence            4678888874 2223  4678999999999876434557877789999999999999654332245789998  999999


Q ss_pred             HHHHHHHhhc--CCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc---CceEEEEeCCCC
Q 038416           85 AIEISLSVLA--RPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE---NTVAIVIINPGN  159 (387)
Q Consensus        85 a~~~~~~~l~--~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~v~l~~p~n  159 (387)
                      ++..+++++.  .+||+|+++.|+|+++...++  ..|.+++.+++.+++++.+|++++++++++   +++++++++|+|
T Consensus       106 a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~--~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~n  183 (396)
T 2q7w_A          106 ALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFN--SAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHN  183 (396)
T ss_dssp             HHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHH--HTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCT
T ss_pred             hHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHH--HcCCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCC
Confidence            9999998763  699999999999999999999  899999999885445678999999998864   367788899999


Q ss_pred             CccccCCHHHHHHHHHHHHhcCcEEeecccccccccCC-CCCccccccCC-CccEEEEecCcccccccccceEEEEe--e
Q 038416          160 PCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS-TPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVT--S  235 (387)
Q Consensus       160 ptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~-~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~--~  235 (387)
                      |||.++|.+++++|+++|+++|+++|+||+|+++.+++ ....++..+.. .++++++.|+||.++++|+|+||+++  +
T Consensus       184 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~  263 (396)
T 2q7w_A          184 PTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERVGACTLVAA  263 (396)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECS
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccccccccccceEEEEcC
Confidence            99999999999999999999999999999999987653 11223332322 25789999999999999999999997  2


Q ss_pred             CCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhcc-----HHHHHHHHHHHHHHHHHHHHHhhcCC---CCCC
Q 038416          236 DPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETN-----EAFFAKIIGLLKETADICYERIKEIP---CITC  306 (387)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~  306 (387)
                      ++...   .++++.+.... ....+++++.+.++..+++...     +.++++..++++++++.+.+.|++++   ++. 
T Consensus       264 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-  339 (396)
T 2q7w_A          264 DSETV---DRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFS-  339 (396)
T ss_dssp             SHHHH---HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCT-
T ss_pred             CHHHH---HHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-
Confidence            21000   02444444332 2334558888998888887531     35677888899999999999999874   366 


Q ss_pred             CCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeC-ChHhHHHHHHHHHHH
Q 038416          307 PVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAA-EPATLEDGLERIKAF  379 (387)
Q Consensus       307 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~-~~e~~~~~~~~l~~~  379 (387)
                      +..|.+|+++|+.++         . +.+..+++++||.+.||        +||+++. +++++++++++|+++
T Consensus       340 ~~~~~~~~~~~~~~~---------~-~~~~~~l~~~gv~v~~~--------~Ris~~~~~~e~i~~~~~~l~~~  395 (396)
T 2q7w_A          340 FIIKQNGMFSFSGLT---------K-EQVLRLREEFGVYAVAS--------GRVNVAGMTPDNMAPLCEAIVAV  395 (396)
T ss_dssp             HHHHCCSSEEECCCC---------H-HHHHHHHHHHCEECCTT--------CEEEGGGCCTTTHHHHHHHHHHH
T ss_pred             eecCCCceEEEecCC---------H-HHHHHHHHhcCeeecCC--------ceEEEeecCHHHHHHHHHHHHhc
Confidence            336788889887653         2 35566677889999885        5999975 899999999999875

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=100.00  E-value=1e-39  Score=308.90  Aligned_cols=358  Identities=15%  Similarity=0.121  Sum_probs=268.6

Q ss_pred             cccccccCCCCCCCCCC-CCCCCcHHHHHHHHHHh--cCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEE--c
Q 038416            5 KGQETRHSPWPRRPLGV-SLLSDSTVAEDAVVDAL--RTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYL--T   79 (387)
Q Consensus         5 ~g~~~~~~~~~~~~~~~-~~~~~~~~v~~a~~~~~--~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~--~   79 (387)
                      .+.+.+++++.|.+... ...+..+.+.+++.+..  .......|.+..|..++|+.+++++......++++++|++  |
T Consensus        46 ~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t  125 (448)
T 3meb_A           46 DTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQS  125 (448)
T ss_dssp             CCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred             CCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhcCCCccccCcCcEEEEEC
Confidence            45556788889877332 23446778888877665  2223457888889999999999998311100112689999  9


Q ss_pred             CChHHHHHH--HHHhhcCCCCeEEEcCCCCcchHHHhh--ccCCCceeeeeccCCCC-CccCChhhHHHhhcc---CceE
Q 038416           80 LGCSQAIEI--SLSVLARPGANILIPRPGYPLYEIHAA--GSNNNLEARHYDLLPEK-RWEVDLDGVEALADE---NTVA  151 (387)
Q Consensus        80 ~g~~~a~~~--~~~~l~~~g~~vl~~~p~~~~~~~~~~--~~~~g~~~~~~~~~~~~-~~~~~~~~l~~~~~~---~~~~  151 (387)
                      +|+++++..  .+..++.+||+|+++.|+|.++...++  ....|.+++.+++...+ ++.+|++++++++++   ++++
T Consensus       126 ~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~  205 (448)
T 3meb_A          126 LSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIF  205 (448)
T ss_dssp             SHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEE
T ss_pred             CcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhCCCCcEE
Confidence            999999988  445667899999999999998865543  01468899999885444 678999999999874   5778


Q ss_pred             EEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCC--CCcccccc-CCCccEEEEecCcccccccccc
Q 038416          152 IVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGST--PYVPMGVF-GSIVPVITLGSISKRWIVPGWR  228 (387)
Q Consensus       152 v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~--~~~~~~~~-~~~~~~~~i~s~sK~~~~~g~r  228 (387)
                      +++++|+||||..++.+++++|+++|+++|+++|+|++|+++.+++.  ...++..+ ....+++++.|+||.|+++|+|
T Consensus       206 v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R  285 (448)
T 3meb_A          206 LFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGER  285 (448)
T ss_dssp             EEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGC
T ss_pred             EEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCcccc
Confidence            88999999999999999999999999999999999999999887641  11222222 2345789999999999999999


Q ss_pred             eEEE--Ee--------eCCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhcc-----HHHHHHHHHHHHHHHH
Q 038416          229 LGWL--VT--------SDPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETN-----EAFFAKIIGLLKETAD  292 (387)
Q Consensus       229 ~G~i--~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~  292 (387)
                      +||+  ++        +++...   +++++.+.... ....+++.+++.++..++....     ...+++..++++++++
T Consensus       286 iG~l~~v~~~~~~~~~~~~~~~---~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~  362 (448)
T 3meb_A          286 IGCLHVVHAGVEGSVEKNKALS---AAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRS  362 (448)
T ss_dssp             CEEEEEECCCCSSSHHHHHHHH---HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeeeeeeccccccccCCHHHH---HHHHHHHHHHHhcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998  66        321000   03555555433 3445677889999888887632     1447788899999999


Q ss_pred             HHHHHhhcC--CC------CCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeC
Q 038416          293 ICYERIKEI--PC------ITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAA  364 (387)
Q Consensus       293 ~~~~~l~~~--~~------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~  364 (387)
                      .+.+.|+++  ++      +.. ..|.+++|+|+.++          .+++..+++++||.+.||..       |||++.
T Consensus       363 ~l~~~L~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~----------~~~~~~ll~~~gV~v~~G~g-------Ris~a~  424 (448)
T 3meb_A          363 LLHASLAKRKTPGPGSKGTWDH-ILTAIGMFTFTGLT----------PEHVDYLKEKWSIYLVKAGG-------RMSMCG  424 (448)
T ss_dssp             HHHHHHHHTTCCCSTTTCCCTH-HHHCCSSEEECCCC----------HHHHHHHHHHHCEEECSGGG-------EEEGGG
T ss_pred             HHHHHHHhhCCCCcCcccccce-eCCCceEEEecCCC----------HHHHHHHHHhCCEEEeCCCc-------EEEEec
Confidence            999999886  55      553 36788999997663          35677777888999999752       999965


Q ss_pred             -ChHhHHHHHHHHHHHHHHh
Q 038416          365 -EPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       365 -~~e~~~~~~~~l~~~~~~~  383 (387)
                       +++++++++++|+++++++
T Consensus       425 ~~~~~i~~~~~~l~~~l~~~  444 (448)
T 3meb_A          425 LTESNCDYVAEAIHDAVTKL  444 (448)
T ss_dssp             CCTTTHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHHHhc
Confidence             8888999999999998854

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=100.00  E-value=1.1e-39  Score=299.32  Aligned_cols=324  Identities=16%  Similarity=0.196  Sum_probs=257.2

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      +.+++++.+.+    .+++++.+.+++.+.+..  ...|+...+ .++|+.+++++      ++++++|++|+|+++++.
T Consensus        15 ~~~id~~~~~~----~~~~~~~v~~a~~~~~~~--~~~y~~~~~-~~lr~~la~~~------~~~~~~i~~t~g~~~al~   81 (350)
T 3fkd_A           15 SEIVNFSTTVW----TDGDKDHLEKHLVENLNC--IRHYPEPDA-GTLRQMLAKRN------SVDNNAILVTNGPTAAFY   81 (350)
T ss_dssp             -CCEECSCCSC----CCSCCHHHHHHHHHTGGG--GGSCCCTTC-HHHHHHHHHHT------TCCGGGEEEESHHHHHHH
T ss_pred             ccEEEccCCCC----CCCCCHHHHHHHHHhHhH--HhcCCCCcH-HHHHHHHHHHh------CcCHHHEEEcCCHHHHHH
Confidence            45667767655    688999999999998843  457877655 89999999998      467889999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeecc-CCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCC
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDL-LPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFS  166 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  166 (387)
                      .++.++.  ||+|+++.|+|.++...++  ..|.+++.+++ +..++  +++        +++++|++++|+||||.++|
T Consensus        82 ~~~~~l~--gd~Vi~~~p~~~~~~~~~~--~~g~~~~~v~~~~~~~~--~~~--------~~~~~v~i~~p~nptG~~~~  147 (350)
T 3fkd_A           82 QIAQAFR--GSRSLIAIPSFAEYEDACR--MYEHEVCFYPSNEDIGE--ADF--------SNMDFCWLCNPNNPDGRLLQ  147 (350)
T ss_dssp             HHHHHTT--TCEEEEEESCCHHHHHHHH--HTTCEEEEEETTSCGGG--SCC--------TTCSEEEEESSCTTTCCCCC
T ss_pred             HHHHHHC--CCEEEEeCCCcHHHHHHHH--HcCCeEEEEecCCcccc--Ccc--------CCCCEEEEeCCCCCcCCCCC
Confidence            9999998  9999999999999999999  99999999987 43333  333        57899999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          167 YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       167 ~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      .+++++|++.|+++  ++|+|++|+.+.+.+....  ..++..++++++.|+||.++++|+|+||+++++        ++
T Consensus       148 ~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~~--~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~--------~~  215 (350)
T 3fkd_A          148 RTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIRP--ADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANK--------DF  215 (350)
T ss_dssp             HHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCCG--GGGTTCSSEEEEEESHHHHSCGGGCCEEEECCH--------HH
T ss_pred             HHHHHHHHHhCCCC--EEEEECchhhhccCcchhh--HHhhcCCCEEEEecCchhccCcchheEeEEeCH--------HH
Confidence            99999999988765  9999999998876654322  334455678999999999999999999999964        78


Q ss_pred             HHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccccc
Q 038416          247 VDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE  326 (387)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~  326 (387)
                      ++.+..... .++++++.+.++..+++... .+.++..+.. ++++.+.+.|+++|++. + .|..+.|+|+.++..   
T Consensus       216 ~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~-~~~~~l~~~L~~~~~~~-~-~~~~~~~~~~~~~~~---  287 (350)
T 3fkd_A          216 MKRVAAFST-PWAVNALAIEAAKFILIHPA-QFTLPIRKWQ-RNTVDFITALNRLDGVE-V-HPSGTTFFLLRLKKG---  287 (350)
T ss_dssp             HHHHHTTCC-TTCSCHHHHHHHHHHHHCTT-TTCCCHHHHH-HHHHHHHHHHHHSTTEE-E-CCCSSSEEEEEESSS---
T ss_pred             HHHHHHhCC-CCCCCHHHHHHHHHHHhCHH-HHHHHHHHHH-HHHHHHHHHHhcCCCcE-E-CCCCCcEEEEECCCC---
Confidence            888877654 45788889999988887532 2333333333 78888889998888888 4 455677888887642   


Q ss_pred             CCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHHH
Q 038416          327 DIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       327 ~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~~  382 (387)
                         +..++...+++++||.+.||..|+.  ++++||+++ ++++++++++.|++++++
T Consensus       288 ---~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~-~~~~~~~l~~al~~~~~~  341 (350)
T 3fkd_A          288 ---TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ-RPAQNQLFIKALETFLEK  341 (350)
T ss_dssp             ---CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHHTC
T ss_pred             ---CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHHHH
Confidence               4567777776658999999998865  689999997 566777777777766654

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=100.00  E-value=1.9e-40  Score=310.80  Aligned_cols=342  Identities=18%  Similarity=0.159  Sum_probs=262.2

Q ss_pred             cccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEE--EcCChHH
Q 038416            7 QETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVY--LTLGCSQ   84 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~--~~~g~~~   84 (387)
                      .+.+++++.|++   .+++.++.+.++++++.. ....+|.+..|..+||+++++++....+.++++++|.  .+.++++
T Consensus        40 ~~~~i~l~~g~~---~d~~~~~~v~~a~~~a~~-~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~g  115 (409)
T 4eu1_A           40 AKRKVNLSIGVY---RDDADQPFVLECVKQATL-GTNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTG  115 (409)
T ss_dssp             CSSCEECCCSSC---CCTTSCCCCCHHHHTCCC-CSCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHH
T ss_pred             CcCceeeeeeEE---ECCCCCEeecHHHHhcCc-cccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchH
Confidence            345678888764   255566667777777733 3345888888999999999999853222112267884  4888888


Q ss_pred             HHHHH---HHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc---cCceEEEEeCCC
Q 038416           85 AIEIS---LSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD---ENTVAIVIINPG  158 (387)
Q Consensus        85 a~~~~---~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~  158 (387)
                      ++..+   +.++.++||+|+++.|+|.++...++  ..|.+++.+++..++++.+|+++++++++   +.++++++++|+
T Consensus       116 a~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~--~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~  193 (409)
T 4eu1_A          116 ALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFA--KAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAH  193 (409)
T ss_dssp             HHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHH--HTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSC
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHH--HcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCC
Confidence            88875   44556899999999999999999999  99999999998655678899999999885   345666779999


Q ss_pred             CCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCC--Ccccccc-CCCccEEEEecCcccccccccceEEE--E
Q 038416          159 NPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTP--YVPMGVF-GSIVPVITLGSISKRWIVPGWRLGWL--V  233 (387)
Q Consensus       159 nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~--~~~~~~~-~~~~~~~~i~s~sK~~~~~g~r~G~i--~  233 (387)
                      ||||.+++.+++++|+++|+++|+++|+||+|+++.+++..  ..++..+ +..+++++++|+||.|+++|+|+||+  +
T Consensus       194 NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~riG~~~~v  273 (409)
T 4eu1_A          194 NPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRCGALHIS  273 (409)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGCCEEEEEE
T ss_pred             CCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCccCCceEEEEE
Confidence            99999999999999999999999999999999998876521  1222222 33457899999999999999999997  5


Q ss_pred             eeCCCCcccchh----HHHHHHhhh-hccCCcchHHHHHHHHHhhhcc-----HHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 038416          234 TSDPNGILQNSG----FVDSIKGCL-NAASHPVTFIQAAVPRIVDETN-----EAFFAKIIGLLKETADICYERIKEIPC  303 (387)
Q Consensus       234 ~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~  303 (387)
                      +.+       ++    +++.++... ....+++.+.+.++..+++...     ...+++..++++++++.+.+.|++++.
T Consensus       274 ~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  346 (409)
T 4eu1_A          274 TAS-------AEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGS  346 (409)
T ss_dssp             CSS-------HHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             eCC-------HHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            543       24    555555543 2455677889999888887532     344778889999999999999998721


Q ss_pred             ---CCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee-CChHhHHHHHHHHHHH
Q 038416          304 ---ITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA-AEPATLEDGLERIKAF  379 (387)
Q Consensus       304 ---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~-~~~e~~~~~~~~l~~~  379 (387)
                         +. +..|.+++++|+.++          .+++..+++++||.+.||        .||+++ .+++++++++++|+++
T Consensus       347 ~~~~~-~~~~~~~~~~~~~~~----------~~~~~~ll~~~gv~v~p~--------~Ri~~~~~~~~~i~~~~~~l~~~  407 (409)
T 4eu1_A          347 VHDWS-HIERQVGMMAYTGLT----------REQVELLRSEYHIYMTLN--------GRAAVSGLNSTNVEYVSQAIHNV  407 (409)
T ss_dssp             CSCCH-HHHHSCSSEEECCCC----------HHHHHHHHHHHCEECCTT--------CEEEGGGCCTTTHHHHHHHHHHH
T ss_pred             CCCcc-eecCCceEEEEeCCC----------HHHHHHHHHcCCEEEcCC--------CEEEEEecCHhhHHHHHHHHHHH
Confidence               55 336788999986553          245677778889999986        389995 5778899999999877


Q ss_pred             H
Q 038416          380 C  380 (387)
Q Consensus       380 ~  380 (387)
                      +
T Consensus       408 l  408 (409)
T 4eu1_A          408 T  408 (409)
T ss_dssp             H
T ss_pred             h
Confidence            5

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=100.00  E-value=9.4e-39  Score=294.24  Aligned_cols=327  Identities=16%  Similarity=0.240  Sum_probs=260.5

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCC--CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTA--HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI   86 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~   86 (387)
                      .+++++.+.+    ++++++.+.+++.+.+...  ....|+.. +..++|+.+++++      ++++++|++|+|+++++
T Consensus        27 ~~i~l~~~~~----~~~~~~~v~~a~~~~~~~~~~~~~~y~~~-~~~~lr~~la~~~------g~~~~~i~~t~g~~~al   95 (360)
T 3hdo_A           27 SWIKLNTNEN----PYPPSPEVVKAILEELGPDGAALRIYPSA-SSQKLREVAGELY------GFDPSWIIMANGSDEVL   95 (360)
T ss_dssp             TSEECSSCCC----SSCCCHHHHHHHHHHHTTTCGGGGSCCCS-SCHHHHHHHHHHH------TCCGGGEEEESSHHHHH
T ss_pred             ceeeccCCCC----CCCCCHHHHHHHHHHHhcccchhhcCCCC-chHHHHHHHHHHh------CcCcceEEEcCCHHHHH
Confidence            4566777665    7899999999999998763  13467653 5699999999999      46788999999999999


Q ss_pred             HHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCC
Q 038416           87 EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFS  166 (387)
Q Consensus        87 ~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  166 (387)
                      ..++.+++++||+|+++.|+|.++...++  ..|.+++.++++.  ++.+  +++++.+  +++++++++|+||||.++|
T Consensus        96 ~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~--~~g~~~~~v~~~~--~~~~--~~l~~~~--~~~~v~i~~p~nptG~~~~  167 (360)
T 3hdo_A           96 NNLIRAFAAEGEEIGYVHPSYSYYGTLAE--VQGARVRTFGLTG--DFRI--AGFPERY--EGKVFFLTTPNAPLGPSFP  167 (360)
T ss_dssp             HHHHHHHCCTTCEEEEESSSCTHHHHHHH--HHTCEEEEECBCT--TSSB--TTCCSSB--CSSEEEEESSCTTTCCCCC
T ss_pred             HHHHHHHhCCCCEEEEcCCChHHHHHHHH--HCCCEEEEeeCCC--CCCH--HHHHhhc--CCCEEEEeCCCCCCCCCcC
Confidence            99999999999999999999999999999  9999999998843  3333  5544433  4679999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          167 YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       167 ~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      .++   +.++|+++|+++|+|++|+.+.  +.....+  ....++++++.|+||.++++|+|+||+++++        ++
T Consensus       168 ~~~---l~~l~~~~~~~li~De~~~~~~--~~~~~~~--~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~--------~~  232 (360)
T 3hdo_A          168 LEY---IDELARRCAGMLVLDETYAEFA--ESNALEL--VRRHENVVVTRTLSKSYSLAGMRIGLAIARP--------EV  232 (360)
T ss_dssp             HHH---HHHHHHHBSSEEEEECTTGGGS--SCCCTHH--HHHCSSEEEEEESTTTTSCTTSCCEEEECCH--------HH
T ss_pred             HHH---HHHHHHHCCCEEEEECChHhhC--CcchhHH--hccCCCEEEEecchHhhcCCccceeeEeeCH--------HH
Confidence            655   5556678999999999999863  3322222  2334678999999999999999999999865        78


Q ss_pred             HHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccccc
Q 038416          247 VDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE  326 (387)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~  326 (387)
                      ++.+..... .++++++.+.++..+++.  ..++++..++++++++.+.+.|+++ ++. + .+..+.|+|+.++.    
T Consensus       233 ~~~~~~~~~-~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~-~~~~~~~~~~~~~~----  302 (360)
T 3hdo_A          233 IAALDKIRD-HYNLDRLAQAACVAALRD--QAYLSECCRRIRETREWFTTELRSI-GYD-V-IPSQGNYLFATPPD----  302 (360)
T ss_dssp             HHHHHHHSC-SCCSCHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHT-TCE-E-CCCSSSEEEEECTT----
T ss_pred             HHHHHHhCC-CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHC-CCE-E-cCCCccEEEEECCC----
Confidence            888877654 467889999999998885  5678899999999999999999988 777 4 35566788877653    


Q ss_pred             CCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHHh
Q 038416          327 DIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       327 ~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~  383 (387)
                        .+..++...+ .++||.+.++.....++++||+++ ++++++++++.|++..+.+
T Consensus       303 --~~~~~l~~~l-~~~gi~v~~~~~~~~~~~iRis~~-~~~e~~~l~~al~~~~~~~  355 (360)
T 3hdo_A          303 --RDGKRVYDGL-YARKVLVRHFSDPLLAHGMRISIG-TREEMEQTLAALKEIGEGH  355 (360)
T ss_dssp             --CCHHHHHHHH-HHTTEECBCCCSTTTTTSEEEECC-CHHHHHHHHHHHHHHHC--
T ss_pred             --CCHHHHHHHH-HHCCEEEEECCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHhccc
Confidence              1455666665 567999999876556789999998 7889999999888776543

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=100.00  E-value=3.2e-38  Score=288.00  Aligned_cols=308  Identities=16%  Similarity=0.217  Sum_probs=246.8

Q ss_pred             CCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEE
Q 038416           23 LLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILI  102 (387)
Q Consensus        23 ~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~  102 (387)
                      .+++++.+.+++.+....  ...|+. .+..++|+.+++++      ++++++|++|+|+++++..++.++  +||+|++
T Consensus        27 ~~~~~~~v~~a~~~~~~~--~~~y~~-~~~~~lr~~la~~~------~~~~~~i~~t~G~~~~l~~~~~~~--~gd~vl~   95 (337)
T 3p1t_A           27 PEAVEPRVQAAIAAAAAR--INRYPF-DAEPRVMRKLAEHF------SCPEDNLMLVRGIDECFDRISAEF--SSMRFVT   95 (337)
T ss_dssp             CSCCCHHHHHHHHHHGGG--TTSCCT-THHHHHHHHHHHHH------TSCGGGEEEESHHHHHHHHHHHHS--TTSEEEE
T ss_pred             CCCCCHHHHHHHHHhhhh--hccCCC-CchHHHHHHHHHHh------CcCHHHEEEeCCHHHHHHHHHHhc--CCCeEEE
Confidence            478999999999998865  456764 68899999999999      467889999999999999999998  8999999


Q ss_pred             cCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCc
Q 038416          103 PRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGI  182 (387)
Q Consensus       103 ~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~  182 (387)
                      +.|+|.++...++  ..|.+++.++++  .++.+|+++++++  .+++++++++|+||||.++|.+++.++   |+++++
T Consensus        96 ~~p~~~~~~~~~~--~~g~~~~~v~~~--~~~~~d~~~l~~~--~~~~~v~i~~p~nptG~~~~~~~l~~l---~~~~~~  166 (337)
T 3p1t_A           96 AWPGFDGYRARIA--VSGLRHFEIGLT--DDLLLDPNDLAQV--SRDDCVVLANPSNPTGQALSAGELDQL---RQRAGK  166 (337)
T ss_dssp             ESSSCSHHHHHHT--TSCCEEEEECBC--TTSSBCHHHHTTC--CTTEEEEEESSCTTTCCCCCHHHHHHH---HHHCSE
T ss_pred             eCCCcHHHHHHHH--HcCCEEEEecCC--CCCCCCHHHHHhh--cCCCEEEEeCCCCCCCCCCCHHHHHHH---HHhCCc
Confidence            9999999999999  999999999874  3568899999886  468999999999999999997665555   557776


Q ss_pred             EEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhhccCCcch
Q 038416          183 IVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVT  262 (387)
Q Consensus       183 ~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (387)
                       +|+||+|+.+...+.  ..   ....+++++++|+||.|+++|+|+||+++++        ++++.+..... ..+++.
T Consensus       167 -~ivDea~~~~~~~~~--~~---~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~--------~~~~~l~~~~~-~~~~~~  231 (337)
T 3p1t_A          167 -LLIDETYVDYSSFRA--RG---LAYGENELVFRSFSKSYGLAGLRLGALFGPS--------ELIAAMKRKQW-FCNVGT  231 (337)
T ss_dssp             -EEEECTTGGGSSCSS--SC---CCCBTTEEEEEESSSTTCCTTTCCEEEECCH--------HHHHHHHTTSC-TTCSCH
T ss_pred             -EEEECCChhhccccc--cc---cccCCCEEEEeeCchhccCcchheEEEEeCH--------HHHHHHHhhcC-CCCCCH
Confidence             666999998664332  11   1233568999999999999999999999875        78887776543 467788


Q ss_pred             HHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhc
Q 038416          263 FIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEE  342 (387)
Q Consensus       263 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  342 (387)
                      +.+.++..+++.  ...+.+..+++.++++.+.+.|+++ ++. +..+. +.|+|+..+        +..++. +++.++
T Consensus       232 ~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~-~~~~~~~~~--------~~~~~~-~~l~~~  297 (337)
T 3p1t_A          232 LDLHALEAALDN--DRAREAHIAKTLAQRRRVADALRGL-GYR-VASSE-ANFVLVENA--------AGERTL-RFLRER  297 (337)
T ss_dssp             HHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHHHHHT-TCC-BCCCS-SSEEEEECT--------TTHHHH-HHHHHT
T ss_pred             HHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHC-cCE-ECCCC-CeEEEEEcC--------CHHHHH-HHHHHC
Confidence            889888888875  3346667777788889999999988 777 42444 456666654        233444 445778


Q ss_pred             CeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHH
Q 038416          343 SVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFC  380 (387)
Q Consensus       343 gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~  380 (387)
                      ||.+.||..|+.++++||+++ ++++++++++.|+++.
T Consensus       298 gi~v~~g~~~~~~~~iRis~~-~~~~~~~l~~al~~~~  334 (337)
T 3p1t_A          298 GIQVKDAGQFGLHHHIRISIG-REEDNDRLLAALAEYS  334 (337)
T ss_dssp             TEECEEGGGGTCCSEEEEECC-CHHHHHHHHHHHHHHT
T ss_pred             CeEEEECccCCCCCeEEEecC-CHHHHHHHHHHHHHHh
Confidence            999999999988899999998 5788888888887764

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=100.00  E-value=2e-40  Score=308.38  Aligned_cols=327  Identities=16%  Similarity=0.154  Sum_probs=251.5

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhc--C-CCCCCCCCCCCc-----HHHHHHHHHHHhhcCCCCCCC-CCEEEc
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALR--T-AHYNCYSPTLGV-----PSARRGIADYLNRDLPYKLSP-EDVYLT   79 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~--~-~~~~~y~~~~~~-----~~lr~~ia~~~~~~~~~~~~~-~~i~~~   79 (387)
                      ..++++.|.|    +++.++.+.+++.+...  . ....+|++..|.     .+||+++++|++ .++..+.+ ++|++|
T Consensus        23 ~~i~l~~g~p----~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~i~~t   97 (391)
T 3bwn_A           23 FVVNLDHGDP----TAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATEDRYIVVG   97 (391)
T ss_dssp             SCEECSSCCC----GGGHHHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSSSEEEEE
T ss_pred             CeeEcCCCCC----CCCCCHHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCCCeEEEe
Confidence            4567788877    67777777776644332  1 134579888888     999999999998 45666666 589999


Q ss_pred             CChHHHHHHHHHhhcCCCC----eEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEe
Q 038416           80 LGCSQAIEISLSVLARPGA----NILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVII  155 (387)
Q Consensus        80 ~g~~~a~~~~~~~l~~~g~----~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~  155 (387)
                      +|+++++..++.+++++||    +|+++.|+|.++...++  ..|.+++.++++.+ +  +.        .+++++|+++
T Consensus        98 ~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~--~~g~~~~~~~~d~~-~--l~--------~~~~k~v~l~  164 (391)
T 3bwn_A           98 TGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETT--YVRSGMYKWEGDAW-G--FD--------KKGPYIELVT  164 (391)
T ss_dssp             EHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHH--TTCBTTEEEEEEST-T--CC--------CCSCEEEEEE
T ss_pred             CChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHH--HcCCeEEEecCCHH-H--cC--------CCCCEEEEEC
Confidence            9999999999999999999    99999999999999999  99999988887532 2  22        2578999999


Q ss_pred             CCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEe-
Q 038416          156 NPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVT-  234 (387)
Q Consensus       156 ~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~-  234 (387)
                      +||||||.+++     +|++.++.+++++|+|++|..    + ...++..  ..+++++++||||.|+++|+|+||+++ 
T Consensus       165 ~p~NPtG~~~~-----~l~~~~~~~~~~ii~De~y~~----~-~~~~l~~--~~~~~i~~~S~SK~~g~~GlRiG~~~~~  232 (391)
T 3bwn_A          165 SPNNPDGTIRE-----TVVNRPDDDEAKVIHDFAYYW----P-HYTPITR--RQDHDIMLFTFSKITGHAGSRIGWALVK  232 (391)
T ss_dssp             SSCTTTCCCCC-----CCC-----CCCEEEEECTTCS----T-TTSCCCC--CBCCSEEEEEHHHHHSCGGGCEEEEEEC
T ss_pred             CCCCCCchhHH-----HHHHHhhcCCCEEEEeCCCCC----C-CCCcccc--CCCCeEEEEechhhcCCCccceEEEEec
Confidence            99999999986     344422223399999999973    1 2223332  345789999999999999999999997 


Q ss_pred             eCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhcc---------HHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 038416          235 SDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETN---------EAFFAKIIGLLKETADICYERIKEIPCI  304 (387)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~~~~  304 (387)
                      ++        ++++.+..... ...+++.+.|.++..+|+...         +.++++..+.++++++.+.+.|+++|++
T Consensus       233 ~~--------~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  304 (391)
T 3bwn_A          233 DK--------EVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAF  304 (391)
T ss_dssp             CH--------HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSE
T ss_pred             CH--------HHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            44        68888877654 346788899999999988642         4578889999999999999999988766


Q ss_pred             CCCCCC-------------CceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC-CCeEEEEeeCChHhHH
Q 038416          305 TCPVKP-------------QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM-KNWLRIAFAAEPATLE  370 (387)
Q Consensus       305 ~~~~~~-------------~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-~~~~Ri~~~~~~e~~~  370 (387)
                      .+. .|             .+|+|+|++++.        . +.+..+++++||.+.||..|+. .+++|||++.++++++
T Consensus       305 ~~~-~p~~~~~~f~~~~~~~~g~~~~~~~~~--------~-~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~~~~e~i~  374 (391)
T 3bwn_A          305 TLP-KYPEAFCNYFGKSLESYPAFAWLGTKE--------E-TDLVSELRRHKVMSRAGERCGSDKKHVRVSMLSREDVFN  374 (391)
T ss_dssp             ECC-CCCCEEETTTTEEECCCCSEEEEEESS--------S-CCHHHHHHHTTEECEEGGGGTCCTTEEEEESCSCHHHHH
T ss_pred             ccc-cCCccccccccccCCCcceEEEecCCc--------H-HHHHHHHHHCCEEEccCCCCCCCCCEEEEEecCCHHHHH
Confidence            632 33             345588988863        1 2445566788999999999976 6899999988899999


Q ss_pred             HHHHHHHHHHHHh
Q 038416          371 DGLERIKAFCQRH  383 (387)
Q Consensus       371 ~~~~~l~~~~~~~  383 (387)
                      +++++|++++++.
T Consensus       375 ~~~~~L~~~~~~~  387 (391)
T 3bwn_A          375 VFLERLANMKLIK  387 (391)
T ss_dssp             HHHHHHHSCC---
T ss_pred             HHHHHHHHHHHhh
Confidence            9999998877653

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=100.00  E-value=1.1e-39  Score=304.19  Aligned_cols=340  Identities=16%  Similarity=0.163  Sum_probs=263.2

Q ss_pred             cccCCCCCCCCC-CCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEE--cCChHHH
Q 038416            9 TRHSPWPRRPLG-VSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYL--TLGCSQA   85 (387)
Q Consensus         9 ~~~~~~~~~~~~-~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~--~~g~~~a   85 (387)
                      .+++++.|.+.. ...+++++.+.+++.+.+.......|++..+..++|+++++++...   +.++++|++  |+|+++|
T Consensus        27 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~---~~~~~~v~~~~~~g~~~a  103 (394)
T 2ay1_A           27 GKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGD---GLKSETTATLATVGGTGA  103 (394)
T ss_dssp             TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGG---GCCGGGEEEEEEEHHHHH
T ss_pred             cccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHHhCC---CCCcccEEEEecCCchhH
Confidence            467788887522 2234778999999999876434557888788999999999998431   226789999  9999999


Q ss_pred             HHHHHHhhcC--CCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccC---ceEEEEeCCCCC
Q 038416           86 IEISLSVLAR--PGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADEN---TVAIVIINPGNP  160 (387)
Q Consensus        86 ~~~~~~~l~~--~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~v~l~~p~np  160 (387)
                      +..++.++..  +||+|+++.|+|+++...++  ..|.+++.+++.+++++.+|++++++++++.   ++++++++|+||
T Consensus       104 ~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~np  181 (394)
T 2ay1_A          104 LRQALELARMANPDLRVFVSDPTWPNHVSIMN--FMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNP  181 (394)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEESCCHHHHHHHH--HHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTT
T ss_pred             HHHHHHHHHhcCCCCEEEEcCCCChhHHHHHH--HcCCceEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence            9999988754  89999999999999999999  8999999998865456789999999988653   567778999999


Q ss_pred             ccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCC-CCccccccCC-CccEEEEecCcccccccccceEEEEe--eC
Q 038416          161 CGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGST-PYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVT--SD  236 (387)
Q Consensus       161 tG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~-~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~--~~  236 (387)
                      ||.++|.+++++|+++|+++|+++|+||+|+++.+++. ...++..+.. .+++++++|+||.++++|+|+||+++  ++
T Consensus       182 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~  261 (394)
T 2ay1_A          182 TGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCAD  261 (394)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcCCccceEEEEeCC
Confidence            99999999999999999999999999999998876431 1112222221 24689999999999999999999997  32


Q ss_pred             CCCcccchhHH----HHHHhhh-hccCCcchHHHHHHHHHhhhcc-----HHHHHHHHHHHHHHHHHHHHHhhcCC---C
Q 038416          237 PNGILQNSGFV----DSIKGCL-NAASHPVTFIQAAVPRIVDETN-----EAFFAKIIGLLKETADICYERIKEIP---C  303 (387)
Q Consensus       237 ~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~---~  303 (387)
                             ++++    +.+.... ....+++++.+.++..+++...     +.++++..++++++++.+.+.|++++   +
T Consensus       262 -------~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  334 (394)
T 2ay1_A          262 -------AATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDR  334 (394)
T ss_dssp             -------HHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSST
T ss_pred             -------HHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence                   1333    3333222 2234458889988888887531     35678888999999999999998863   3


Q ss_pred             CCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee-CChHhHHHHHHHHHHH
Q 038416          304 ITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA-AEPATLEDGLERIKAF  379 (387)
Q Consensus       304 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~-~~~e~~~~~~~~l~~~  379 (387)
                      +. +..|.+|+|+|+.++         . +.+..+++++||.+.||        +||+++ .+++++++++++|+++
T Consensus       335 ~~-~~~~~~g~~~~~~~~---------~-~~~~~~l~~~gi~v~~~--------~Ris~~~~~~~~i~~~~~~l~~~  392 (394)
T 2ay1_A          335 FG-FVAEHRGMFSRLGAT---------P-EQVKRIKEEFGIYMVGD--------SRINIAGLNDNTIPILARAIIEV  392 (394)
T ss_dssp             TT-HHHHCCSSEEECCCC---------H-HHHHHHHHHHCEECCTT--------CEEEGGGCCTTTHHHHHHHHHHH
T ss_pred             ee-EEcCCceEEEeeCCC---------H-HHHHHHHHhCCEEecCC--------CeEEeecCCHhhHHHHHHHHHHc
Confidence            66 335677999997664         2 34566677889999885        599996 4899999999999765

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=100.00  E-value=4.4e-40  Score=309.03  Aligned_cols=329  Identities=13%  Similarity=0.138  Sum_probs=262.0

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCC--CCCCCCC-C---cHHHHHHHHHHHhhcCCCCCCCCCEEEcCCh
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHY--NCYSPTL-G---VPSARRGIADYLNRDLPYKLSPEDVYLTLGC   82 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~y~~~~-~---~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~   82 (387)
                      ..++.+.|.|    +++.++.+.+++.+.+.....  ..|++.. |   ..+||+++++|++...+..+++++|++|+|+
T Consensus        57 ~~i~l~~g~~----~~~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~  132 (427)
T 2hox_A           57 CSADVASGDG----LFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGV  132 (427)
T ss_dssp             CCEECCSCCC----GGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHH
T ss_pred             ceEEecCcCC----CCCCCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCCH
Confidence            4566777766    677888999999888742222  3488877 8   8999999999998876666788999999999


Q ss_pred             HHHHHHHHHhh--------cCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEE
Q 038416           83 SQAIEISLSVL--------ARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVI  154 (387)
Q Consensus        83 ~~a~~~~~~~l--------~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l  154 (387)
                      ++++..++.++        +++||+|+++.|+|..+...++  ..|.+++.+        .+|++.|+++++++++++++
T Consensus       133 ~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~--~~g~~~~~~--------~~d~~~l~~~~~~~~k~v~l  202 (427)
T 2hox_A          133 TQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTK--YFDKKGYVW--------AGNAANYVNVSNPEQYIEMV  202 (427)
T ss_dssp             HHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHH--HSCBTTEEE--------EEEGGGGTTCSCGGGEEEEE
T ss_pred             HHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHH--HcCCeeeee--------cCCHHHHHHhhcCCceEEEE
Confidence            99999999999        8999999999999999999999  888887643        45788888888888999999


Q ss_pred             eCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEe
Q 038416          155 INPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVT  234 (387)
Q Consensus       155 ~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~  234 (387)
                      ++|+||||.+++ +.+       +  ++..+.|+++.+      +..++..+. .+++++++||||.++++|+|+||+++
T Consensus       203 ~~p~NPtG~~~~-~~l-------~--~~~~i~d~~~~~------~~~s~~~~~-~~~~i~~~S~SK~~g~~G~RiG~~~~  265 (427)
T 2hox_A          203 TSPNNPEGLLRH-AVI-------K--GCKSIYDMVYYW------PHYTPIKYK-ADEDILLFTMSKFTGHSGSRFGWALI  265 (427)
T ss_dssp             ESSCTTTCCCCC-CSS-------T--TCEEEEECTTCS------TTTSCCCSC-BCCSEEEEEHHHHTSCGGGCCEEEEE
T ss_pred             cCCCCCcccccH-HHH-------c--CCCEEEeecccC------CCCCccccC-CCceEEEEeChhcCCCCCceEEEEEE
Confidence            999999999999 422       2  456777776642      122333333 46789999999999999999999999


Q ss_pred             eCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhcc----------HHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 038416          235 SDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETN----------EAFFAKIIGLLKETADICYERIKEIPC  303 (387)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~~~~  303 (387)
                      ++       +++++++.+... ...+++.+.|.++..+|+...          +.++.+..+.++++++.+.+.|+++++
T Consensus       266 ~~-------~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  338 (427)
T 2hox_A          266 KD-------ESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDR  338 (427)
T ss_dssp             CC-------HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSS
T ss_pred             CC-------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            52       268888887654 346788889999888887532          245667788999999999999998866


Q ss_pred             CCC--C-----------CCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC-CCeEEEEeeCChHhH
Q 038416          304 ITC--P-----------VKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM-KNWLRIAFAAEPATL  369 (387)
Q Consensus       304 ~~~--~-----------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-~~~~Ri~~~~~~e~~  369 (387)
                      +.+  .           ..|.+|+|+|++++.       +..++...+++++||.+.||..|+. ++++|||++.+++++
T Consensus       339 ~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~-------~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~~~~~e~l  411 (427)
T 2hox_A          339 FSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW-------EEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDF  411 (427)
T ss_dssp             EECCCCCSCEEETTTTEEECCCCSEEEEEECS-------GGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSSCHHHH
T ss_pred             ccccccccccccccccccCCCCceEEEEECCC-------cHHHHHHHHHHHCCEEEcCCCccCCCCCEEEEEecCCHHHH
Confidence            653  1           135569999999864       2345677777788999999998876 789999998899999


Q ss_pred             HHHHHHHHHHHHH
Q 038416          370 EDGLERIKAFCQR  382 (387)
Q Consensus       370 ~~~~~~l~~~~~~  382 (387)
                      ++++++|++++++
T Consensus       412 ~~~l~~l~~~~~~  424 (427)
T 2hox_A          412 DQLMYYLKDMVKA  424 (427)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988754

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=100.00  E-value=8.3e-38  Score=290.39  Aligned_cols=350  Identities=15%  Similarity=0.100  Sum_probs=255.2

Q ss_pred             ccCCCCCCCCCCC-CCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCC--EEEcCChHHHH
Q 038416           10 RHSPWPRRPLGVS-LLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPED--VYLTLGCSQAI   86 (387)
Q Consensus        10 ~~~~~~~~~~~~~-~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~--i~~~~g~~~a~   86 (387)
                      ++|+++|-..... ..+..+.|++|.+.+........|.+..|.+++|+++++++...   ....+.  .+-|.|+|.|+
T Consensus        46 kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia~~~~g~---~~~~~~~~~~qt~ggtga~  122 (420)
T 4h51_A           46 KANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFIDEAVKIIYGN---TVELENLVAVQTLSGTGAV  122 (420)
T ss_dssp             CEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHC------CGGGEEEEEEEHHHHHH
T ss_pred             CEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHHHHHHHhcCC---CccccccceeeecCchHHH
Confidence            6788898432211 23567899999988887665556999999999999999988432   222233  34578888887


Q ss_pred             HHHHHhh----cCCCCeEEEcCCCCcchHHHhhccCCCce-eeeeccCCCCCccCChhhHHHhh---ccCceEEEEeCCC
Q 038416           87 EISLSVL----ARPGANILIPRPGYPLYEIHAAGSNNNLE-ARHYDLLPEKRWEVDLDGVEALA---DENTVAIVIINPG  158 (387)
Q Consensus        87 ~~~~~~l----~~~g~~vl~~~p~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~v~l~~p~  158 (387)
                      ..++..+    .++||.|++++|+|.+|...++  ..|.+ +..++....+++.+|.+.+.+.+   .++++++++++||
T Consensus       123 ~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~--~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~  200 (420)
T 4h51_A          123 SLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVK--AAGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAH  200 (420)
T ss_dssp             HHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHH--HTTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSC
T ss_pred             HHHHHHHHHhcCCCCCEEEEecCCchhHHHHHH--HcCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCC
Confidence            7666554    4799999999999999999999  99987 44555544556678888877765   3567788888999


Q ss_pred             CCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccc---cccCCCccEEEEecCcccccccccceEEEEee
Q 038416          159 NPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPM---GVFGSIVPVITLGSISKRWIVPGWRLGWLVTS  235 (387)
Q Consensus       159 nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~  235 (387)
                      ||||..++.+++++|+++|+++++++|+|++|.+|.+++......   ...+...+++++.||||.|+++|+|+||+++.
T Consensus       201 NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~  280 (420)
T 4h51_A          201 NPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLL  280 (420)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEE
T ss_pred             CCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEec
Confidence            999999999999999999999999999999999998765322221   11233456899999999999999999999987


Q ss_pred             CCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhcc-----HHHHHHHHHHHHHHHHHHHHHhhcCC---CCCC
Q 038416          236 DPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETN-----EAFFAKIIGLLKETADICYERIKEIP---CITC  306 (387)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~  306 (387)
                      .+.. .....+..++.... ...+.++..++.++..++.+..     +..++.+.+++.++|+.+.+.|+++.   .|..
T Consensus       281 ~~~~-~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~  359 (420)
T 4h51_A          281 LKDK-TKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEH  359 (420)
T ss_dssp             CSCH-HHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTH
T ss_pred             ccCH-HHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCe
Confidence            5210 00001112222222 2456777888888888887632     34567778889999999999998862   2442


Q ss_pred             CCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee-CChHhHHHHHHHHHHHHHHhhh
Q 038416          307 PVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA-AEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       307 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~-~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      + .++.|+|.|+.++         . +.++ +|+++||.+.||+        |||++ .++++++.+.++|.+++++..+
T Consensus       360 i-~~q~GmF~~~gls---------~-e~v~-~L~e~~Vy~~~~g--------Ris~Agl~~~ni~~~a~aI~~vvr~i~r  419 (420)
T 4h51_A          360 V-INQIGMFSFLGLS---------K-AQCE-YCQNHNIFITVSG--------RANMAGLTHETALMLAQTINDAVRNVNR  419 (420)
T ss_dssp             H-HHCCSSEEECCCC---------H-HHHH-HHHHTTEECCTTC--------EEEGGGCCHHHHHHHHHHHHHHHC----
T ss_pred             e-cCCCceEEecCcC---------H-HHHH-HHHhCCEEEcCCC--------EEEeccCCHHHHHHHHHHHHHHHHHhhc
Confidence            3 5677999886553         2 3344 4588899988864        99995 6999999999999999988654

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=100.00  E-value=1.3e-37  Score=283.84  Aligned_cols=314  Identities=19%  Similarity=0.258  Sum_probs=249.3

Q ss_pred             ccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHH
Q 038416           10 RHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEIS   89 (387)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~   89 (387)
                      ++++..+.+    +++.++.+.+++.+.+......+|+.. +..++|+.+++++++.   .+++++|++|+|+++++..+
T Consensus        21 ~i~l~~~~~----~~~~~~~v~~a~~~~~~~~~~~~y~~~-~~~~lr~~la~~~~~~---~~~~~~v~~~~G~~~al~~~   92 (335)
T 1uu1_A           21 KTYLALNEN----PFPFPEDLVDEVFRRLNSDALRIYYDS-PDEELIEKILSYLDTD---FLSKNNVSVGNGADEIIYVM   92 (335)
T ss_dssp             SEEESSCCC----SSCCCHHHHHHHHHTCCGGGGGSCCCS-SCHHHHHHHHHHHTCS---SCCGGGEEEESSHHHHHHHH
T ss_pred             ceECCCCCC----CCCCCHHHHHHHHHHhhhhhhhcCCCC-chHHHHHHHHHHcCCC---CCCHHHEEEcCChHHHHHHH
Confidence            445555443    577899999999998843334567653 6899999999999542   25678999999999999999


Q ss_pred             HHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHH
Q 038416           90 LSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQH  169 (387)
Q Consensus        90 ~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~  169 (387)
                      ++++   ||+|+++ |+|+++...++  ..|.++..++++  +++.+|++++     +++++|++++|+||||.++|.++
T Consensus        93 ~~~~---gd~Vl~~-p~y~~~~~~~~--~~g~~~~~v~~~--~~~~~d~~~l-----~~~~~v~l~~p~nptG~~~~~~~  159 (335)
T 1uu1_A           93 MLMF---DRSVFFP-PTYSCYRIFAK--AVGAKFLEVPLT--KDLRIPEVNV-----GEGDVVFIPNPNNPTGHVFEREE  159 (335)
T ss_dssp             HHHS---SEEEECS-SSCHHHHHHHH--HHTCEEEECCCC--TTSCCCCCCC-----CTTEEEEEESSCTTTCCCCCHHH
T ss_pred             HHHh---CCcEEEC-CCcHHHHHHHH--HcCCeEEEeccC--CCCCCCHHHc-----CCCCEEEEeCCCCCCCCCCCHHH
Confidence            9998   8999999 99999999988  899999988874  3457788776     57899999999999999999998


Q ss_pred             HHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHH
Q 038416          170 LQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDS  249 (387)
Q Consensus       170 ~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~  249 (387)
                      +++++++|   | ++|+|++|+++...  ..  +..++..+++++++|+||.++++|+|+||+++++        ++++.
T Consensus       160 l~~l~~~~---~-~li~De~~~~~~~~--~~--~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~--------~~~~~  223 (335)
T 1uu1_A          160 IERILKTG---A-FVALDEAYYEFHGE--SY--VDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASE--------KFIDA  223 (335)
T ss_dssp             HHHHHHTT---C-EEEEECTTHHHHCC--CC--GGGGGTCSSEEEEEESTTTTTCGGGCCEEEEECH--------HHHHH
T ss_pred             HHHHHHhC---C-EEEEECcchhhcch--hH--HHHhhhCCCEEEEecchhhcCCcccCeEEEEeCH--------HHHHH
Confidence            88888877   7 89999999986532  11  2223334578999999999999999999999965        67777


Q ss_pred             HHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCC
Q 038416          250 IKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIG  329 (387)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  329 (387)
                      +..... .++++++.+.++..+++.  .+++++..++++++++.+.+.|+++ ++. + .|.+++|+|++++.      .
T Consensus       224 l~~~~~-~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~~~~~~~~~~~~~------~  291 (335)
T 1uu1_A          224 YNRVRL-PFNVSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREM-GYR-I-TDSRGNFVFVFMEK------E  291 (335)
T ss_dssp             HHHHSC-TTCSCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHH-TCC-B-CCCCSSEEEEECCT------H
T ss_pred             HHHhcC-CCCcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHC-CcE-E-cCCCCeEEEEECCC------C
Confidence            776543 357888999999998876  3568888899999999999999887 666 4 45667889988763      1


Q ss_pred             cHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHH
Q 038416          330 DDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAF  379 (387)
Q Consensus       330 ~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~  379 (387)
                      +..++...+. ++||.+.|+     ++++||+++. ++++++++++|+++
T Consensus       292 ~~~~~~~~l~-~~gi~v~~~-----~~~iRis~~~-~~~i~~~~~~l~~~  334 (335)
T 1uu1_A          292 EKERLLEHLR-TKNVAVRSF-----REGVRITIGK-REENDMILRELEVF  334 (335)
T ss_dssp             HHHHHHHHHH-HHTEEEEEE-----TTEEEEECCC-HHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHH-HCCEEEEEC-----CCeEEEEeCC-HHHHHHHHHHHHhh
Confidence            3456666665 569999983     5799999965 57799988888653

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=100.00  E-value=8.3e-36  Score=278.30  Aligned_cols=335  Identities=13%  Similarity=0.080  Sum_probs=255.5

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCC--CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTA--HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI   86 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~   86 (387)
                      .+++++.|.+   +++++++.+.+++.+.+...  ....|....|..++++.+++++.+.++    .+++++|+|+++++
T Consensus        44 ~~idl~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g----~~~v~~~~ggt~a~  116 (398)
T 3a2b_A           44 RVLMFGSNSY---LGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVG----KEAAILFSTGFQSN  116 (398)
T ss_dssp             EEEECSCSCT---TCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT----CSEEEEESSHHHHH
T ss_pred             eEEEeecccc---cCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhC----CCcEEEECCHHHHH
Confidence            3556666644   36668999999999988642  122345556777888888888877655    25899999999999


Q ss_pred             HHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc----CceEEEEeCCCCCcc
Q 038416           87 EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE----NTVAIVIINPGNPCG  162 (387)
Q Consensus        87 ~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~v~l~~p~nptG  162 (387)
                      ..++.+++++||.|+++.|+|..+...++  ..|.+++.++.       .|+++|++++++    ++++|++++|+||||
T Consensus       117 ~~~~~~~~~~gd~V~~~~p~~~~~~~~~~--~~g~~~~~v~~-------~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG  187 (398)
T 3a2b_A          117 LGPLSCLMGRNDYILLDERDHASIIDGSR--LSFSKVIKYGH-------NNMEDLRAKLSRLPEDSAKLICTDGIFSMEG  187 (398)
T ss_dssp             HHHHHHSSCTTCEEEEETTCCHHHHHHHH--HSSSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEEEESBCTTTC
T ss_pred             HHHHHHHhCCCCEEEECCccCHHHHHHHH--HcCCceEEeCC-------CCHHHHHHHHHhhccCCceEEEEeCCCCCCC
Confidence            99999999999999999999999999999  89999988875       478999998876    688999999999999


Q ss_pred             ccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCcc-EEEEecCcccccccccceEEEEeeCCCCcc
Q 038416          163 NVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVP-VITLGSISKRWIVPGWRLGWLVTSDPNGIL  241 (387)
Q Consensus       163 ~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~  241 (387)
                      ..++   +++|.++|+++|+++|+|++|+.+.++.........++..++ +++++|+||+++++|   ||+++++     
T Consensus       188 ~~~~---~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~~~~~-----  256 (398)
T 3a2b_A          188 DIVN---LPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLG---GFVAGDA-----  256 (398)
T ss_dssp             CBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEEECH-----
T ss_pred             CccC---HHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccccCCC---cEEEeCH-----
Confidence            9988   889999999999999999999977653211111111222233 599999999998777   9999865     


Q ss_pred             cchhHHHHHHhh-h-hccCCcchHHHH-HHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEE
Q 038416          242 QNSGFVDSIKGC-L-NAASHPVTFIQA-AVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMV  318 (387)
Q Consensus       242 ~~~~~~~~~~~~-~-~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~  318 (387)
                         ++++.+... . ....+.+++.+. ++..+++..  .++++..++++++++.+.+.|+++ ++.+. .+. |+++|+
T Consensus       257 ---~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~-g~~~~~  328 (398)
T 3a2b_A          257 ---DVIDFLKHNARSVMFSASMTPASVASTLKALEII--QNEPEHIEKLWKNTDYAKAQLLDH-GFDLG-ATE-SPILPI  328 (398)
T ss_dssp             ---HHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHHHT-TCCBC-SCC-SSEEEE
T ss_pred             ---HHHHHHHHhcccceecCCCCHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHHHhc-CCCcC-CCC-CCEEEE
Confidence               677877664 2 222333444554 455667652  345678888999999999999988 77743 444 688898


Q ss_pred             ecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC---CCeEEEEeeC--ChHhHHHHHHHHHHHHHHhh
Q 038416          319 KLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM---KNWLRIAFAA--EPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---~~~~Ri~~~~--~~e~~~~~~~~l~~~~~~~~  384 (387)
                      .++..     .+..++...++++ ||.+.||..|..   .+++||+++.  +++++++++++|+++++++.
T Consensus       329 ~~~~~-----~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~~  393 (398)
T 3a2b_A          329 FIRSN-----EKTFWVTKMLQDD-GVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQAE  393 (398)
T ss_dssp             ECCCH-----HHHHHHHHHHHHT-TEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred             EcCCH-----HHHHHHHHHHHHC-CcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHhC
Confidence            88631     1345677776555 999999987753   5789999974  89999999999999987754

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=100.00  E-value=7.2e-35  Score=271.46  Aligned_cols=319  Identities=11%  Similarity=0.088  Sum_probs=248.2

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCC-CEEEcCChHHHHHHHHHhhcCCCCeEEE
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIEISLSVLARPGANILI  102 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~g~~vl~  102 (387)
                      .+.++.+.+++.+....    +|++  ...++++.+++++.+.+|  .+++ ++++|+|+++|+..++.+++++||+|++
T Consensus        43 ~~~~~~v~~a~~~~~~~----~~~~--~~~~~~~~~~~~la~~~g--~~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~  114 (393)
T 1vjo_A           43 SNAHPSVLQAMNVSPVG----HLDP--AFLALMDEIQSLLRYVWQ--TENPLTIAVSGTGTAAMEATIANAVEPGDVVLI  114 (393)
T ss_dssp             CCCCHHHHHHHSSCCCC----TTSH--HHHHHHHHHHHHHHHHHT--CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEE
T ss_pred             CCCCHHHHHHHhccccc----ccCH--HHHHHHHHHHHHHHHHhC--CCCCcEEEEeCchHHHHHHHHHhccCCCCEEEE
Confidence            45788888888776542    4543  245677777777776655  3566 8999999999999999999999999999


Q ss_pred             cCCCCcc--hHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCccccCCHHHHHHHHHHHHh
Q 038416          103 PRPGYPL--YEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCGNVFSYQHLQKIARTARN  179 (387)
Q Consensus       103 ~~p~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~  179 (387)
                      +.|+|++  +...++  ..|.+++.++++.  ++.+|+++|++++++ ++++|++++|+||||.+++   +++|.++|++
T Consensus       115 ~~~~~~~~~~~~~~~--~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~  187 (393)
T 1vjo_A          115 GVAGYFGNRLVDMAG--RYGADVRTISKPW--GEVFSLEELRTALETHRPAILALVHAETSTGARQP---LEGVGELCRE  187 (393)
T ss_dssp             EESSHHHHHHHHHHH--HTTCEEEEEECCT--TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHH
T ss_pred             EcCChhHHHHHHHHH--HcCCceEEEecCC--CCCCCHHHHHHHHhhCCceEEEEeccCCCcceecc---HHHHHHHHHH
Confidence            9999998  888888  8999999998854  456899999999987 8999999999999999987   7899999999


Q ss_pred             cCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhh------
Q 038416          180 LGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGC------  253 (387)
Q Consensus       180 ~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~------  253 (387)
                      +|+++|+|++|+. .  . ....+.   ..+..+++.|+||+++.++ |+||+++++        ++++.+...      
T Consensus       188 ~~~~li~Dea~~~-g--~-~~~~~~---~~~~di~~~s~sK~l~~~~-~~G~l~~~~--------~~~~~~~~~~~~~~~  251 (393)
T 1vjo_A          188 FGTLLLVDTVTSL-G--G-VPIFLD---AWGVDLAYSCSQKGLGCSP-GASPFTMSS--------RAIEKLQRRRTKVAN  251 (393)
T ss_dssp             HTCEEEEECTTTT-T--T-SCCCTT---TTTCSEEECCSSSTTCSCS-SCEEEEECH--------HHHHHHHTCSSCCSC
T ss_pred             cCCEEEEECCccc-c--C-cCCccc---ccCccEEEEcCcccccCCC-ceEEEEECH--------HHHHHHhccCCCCCc
Confidence            9999999999992 2  1 122222   2234588999999988887 999999976        666666431      


Q ss_pred             --------------hhccC-CcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCc---eEE
Q 038416          254 --------------LNAAS-HPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQG---AMF  315 (387)
Q Consensus       254 --------------~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---g~~  315 (387)
                                    ..... +++.+.+.++..+++...+.++++..++++++++++.+.|+++ ++.+. .|.+   +.+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~  329 (393)
T 1vjo_A          252 WYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI-GLSLH-VEKEYRLPTL  329 (393)
T ss_dssp             STTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBS-SCGGGBCSSE
T ss_pred             eecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc-CCccc-CCccccCCcE
Confidence                          01122 6788888888888876444557888899999999999999988 77744 4543   346


Q ss_pred             EEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe-e--CChHhHHHHHHHHHHHH
Q 038416          316 VMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF-A--AEPATLEDGLERIKAFC  380 (387)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~-~--~~~e~~~~~~~~l~~~~  380 (387)
                      +++.++..     .+..++...+.+++||.+.||..|..++++||++ +  .+++++++++++|++++
T Consensus       330 ~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l  392 (393)
T 1vjo_A          330 TTVCIPDG-----VDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVL  392 (393)
T ss_dssp             EEEECCTT-----CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCC-----CCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence            67766421     2456777777655699999998877789999995 3  46778999999998875

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=2.4e-34  Score=267.20  Aligned_cols=322  Identities=14%  Similarity=0.097  Sum_probs=249.8

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcC
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPR  104 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~  104 (387)
                      +.++.+.+++.+...    .+|++  ...++++.+++++.+.+|.+ +++++++|+|+++|+..++.+++++||+|+++.
T Consensus        30 ~~~~~v~~a~~~~~~----~~~~~--~~~~~~~~~~~~la~~~g~~-~~~~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~  102 (386)
T 2dr1_A           30 ACFPEVLEIMKVQMF----SHRSK--EYRKVHMDTVERLREFLEVE-KGEVLLVPSSGTGIMEASIRNGVSKGGKVLVTI  102 (386)
T ss_dssp             CCCHHHHHHTTSCCC----CTTSH--HHHHHHHHHHHHHHHHHTCS-SSEEEEESSCHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCcHHHHHHHhcccc----cccCH--HHHHHHHHHHHHHHHHhCCC-CCcEEEEeCChHHHHHHHHHHhhcCCCeEEEEc
Confidence            567888887766553    24543  23577777777777766644 367799999999999999999999999999999


Q ss_pred             CCCcc--hHHHhhccCCCceeeeeccCCCCCccCChhhHHHhh--ccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhc
Q 038416          105 PGYPL--YEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALA--DENTVAIVIINPGNPCGNVFSYQHLQKIARTARNL  180 (387)
Q Consensus       105 p~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~  180 (387)
                      |+|++  +...+.  ..|.+++.++++.  ++.+|+++|++++  .+++++|++++|+||||.+.+   +++|.++|+++
T Consensus       103 ~~~~~~~~~~~~~--~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~  175 (386)
T 2dr1_A          103 IGAFGKRYKEVVE--SNGRKAVVLEYEP--GKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNP---LPELAKVAKEH  175 (386)
T ss_dssp             SSHHHHHHHHHHH--HTTCEEEEEECCT--TCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC---HHHHHHHHHHT
T ss_pred             CCchhHHHHHHHH--HhCCceEEEecCC--CCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCC---HHHHHHHHHHc
Confidence            99998  888888  8999999998753  4568999999998  467899999999999999987   79999999999


Q ss_pred             CcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHH---------
Q 038416          181 GIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIK---------  251 (387)
Q Consensus       181 ~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~---------  251 (387)
                      |+++|+|++|+.+.+.    .++..+   +..+++.|+||+++.++ ++||+++++        ++++.+.         
T Consensus       176 ~~~li~D~a~~~~~~~----~~~~~~---~~di~~~s~sK~~~~~~-g~G~~~~~~--------~~~~~~~~~~~~~~~~  239 (386)
T 2dr1_A          176 DKLVFVDAVSAMGGAD----IKFDKW---GLDVVFSSSQKAFGVPP-GLAIGAFSE--------RFLEIAEKMPERGWYF  239 (386)
T ss_dssp             TCEEEEECTTTBTTBC----CCTTTT---TCSEEEEETTSTTCCCS-SCEEEEECH--------HHHHHHTTCTTCCSTT
T ss_pred             CCeEEEEccccccCcc----cccccc---CCcEEEEeccccccCCC-ceEEEEECH--------HHHHHHhcCCCCceEE
Confidence            9999999999965431    122222   34589999999987652 389999976        5666552         


Q ss_pred             -------hh---hhccCCcchHHHHHHHHHhhhccHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC---ceEEEE
Q 038416          252 -------GC---LNAASHPVTFIQAAVPRIVDETNEA-FFAKIIGLLKETADICYERIKEIPCITCPVKPQ---GAMFVM  317 (387)
Q Consensus       252 -------~~---~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~g~~~~  317 (387)
                             ..   ....++++.+.+.++..+++...+. .+++..++++++++++.+.|+++ ++.+. .+.   .+.++|
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~  317 (386)
T 2dr1_A          240 DIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI-GLDIL-AEPGHESPTITA  317 (386)
T ss_dssp             CHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCCBS-SCTTCBCSSEEE
T ss_pred             eHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCeeC-cCccccCCceEE
Confidence                   11   1234567788888888888753333 47788899999999999999988 77744 443   367888


Q ss_pred             EecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHhh
Q 038416          318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      +.++..     .+..++...+.++ ||.+.+|..+...+++||+++  .+++++++++++|+++++++.
T Consensus       318 ~~~~~~-----~~~~~~~~~l~~~-gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  380 (386)
T 2dr1_A          318 VLTPPG-----IKGDEVYEAMRKR-GFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVINELK  380 (386)
T ss_dssp             EECCTT-----CCHHHHHHHHHHT-TEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEcCCC-----CCHHHHHHHHHHC-CeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            887631     1456777777555 999999987666789999997  689999999999999988754

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=100.00  E-value=1.7e-34  Score=271.16  Aligned_cols=333  Identities=14%  Similarity=0.164  Sum_probs=247.4

Q ss_pred             ccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCC------CCCCCC--CCCcHHHHHHHHHHHhhcCCCCC-CCCCEEEcC
Q 038416           10 RHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAH------YNCYSP--TLGVPSARRGIADYLNRDLPYKL-SPEDVYLTL   80 (387)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~------~~~y~~--~~~~~~lr~~ia~~~~~~~~~~~-~~~~i~~~~   80 (387)
                      ++++..+.+    + +.|+.+.+++.+.+....      ...|+.  ..+..++|+.++++++      . +++++++|+
T Consensus        29 ~i~l~~~~~----~-~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~------~~~~~~v~~~~   97 (420)
T 1t3i_A           29 LVYLDNAAT----S-QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFIN------ARSPREIVYTR   97 (420)
T ss_dssp             CEECBTTTC----C-CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTT------CSCGGGEEEES
T ss_pred             eEEecCCcc----C-CCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcC------CCCCCeEEEcC
Confidence            344555555    3 678999999999887521      122332  2456888999999883      3 568999999


Q ss_pred             ChHHHHHHHHHhh----cCCCCeEEEcCCCCcc----hHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEE
Q 038416           81 GCSQAIEISLSVL----ARPGANILIPRPGYPL----YEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAI  152 (387)
Q Consensus        81 g~~~a~~~~~~~l----~~~g~~vl~~~p~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v  152 (387)
                      |+++|+..++.++    +++||+|+++.|+|++    +...++  ..|.+++.++++  .++.+|++++++++++++++|
T Consensus        98 g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~--~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~~~~v  173 (420)
T 1t3i_A           98 NATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAA--KTGAVLKFVQLD--EQESFDLEHFKTLLSEKTKLV  173 (420)
T ss_dssp             SHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHH--HHCCEEEEECBC--TTSSBCHHHHHHHCCTTEEEE
T ss_pred             ChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHH--hcCcEEEEeccC--CCCCcCHHHHHHhhCCCceEE
Confidence            9999999999999    8999999999999998    556667  789999988875  455789999999998899999


Q ss_pred             EEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEE
Q 038416          153 VIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWL  232 (387)
Q Consensus       153 ~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i  232 (387)
                      ++++|+||||..++   +++|.++|+++|+++|+|++|+.+..    ...+..+.   ..+++.|+||.++++|  +||+
T Consensus       174 ~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~----~~~~~~~~---~di~~~s~sK~~~~~g--~G~~  241 (420)
T 1t3i_A          174 TVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPHY----PLDVQLID---CDWLVASGHKMCAPTG--IGFL  241 (420)
T ss_dssp             EEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTS----CCCHHHHT---CSEEEEEGGGTTSCTT--CEEE
T ss_pred             EEeCCcccccCcCC---HHHHHHHHHHcCCEEEEEhhhccCCc----cCchhhcC---CCEEEEehhhhcCCCc--eEEE
Confidence            99999999999998   88999999999999999999985321    11222232   3588999999887777  8999


Q ss_pred             EeeCCCCcccchhHHHHHHhhhh---------------------ccCCcchHHHHHHH-HHhhhccHHHHHHHHHHHHHH
Q 038416          233 VTSDPNGILQNSGFVDSIKGCLN---------------------AASHPVTFIQAAVP-RIVDETNEAFFAKIIGLLKET  290 (387)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~  290 (387)
                      ++++        ++++.+.....                     +..+.+++.+.++. .+++...+..+++..++++++
T Consensus       242 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~  313 (420)
T 1t3i_A          242 YGKE--------EILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVEL  313 (420)
T ss_dssp             EECH--------HHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             EEch--------HHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            9875        67666654321                     11234444444433 345443334567888899999


Q ss_pred             HHHHHHHhhcCCCCCCCCCCC-----ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCcc--------CCCCe
Q 038416          291 ADICYERIKEIPCITCPVKPQ-----GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTV--------GMKNW  357 (387)
Q Consensus       291 ~~~~~~~l~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~--------~~~~~  357 (387)
                      ++.+.+.|++++++.+. .+.     .+.++++.++.      .+..++.. .+.++||.+.+|..|        +..++
T Consensus       314 ~~~l~~~L~~~~g~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~l~~~gi~v~~~~~~~~~~~~~~g~~~~  385 (420)
T 1t3i_A          314 THYLWQGLGQIPQLRLY-GPNPKHGDRAALASFNVAG------LHASDVAT-MVDQDGIAIRSGHHCTQPLHRLFDASGS  385 (420)
T ss_dssp             HHHHHHHHHTCTTEEEE-SCCGGGSCBCSEEEEEETT------BCHHHHHH-HHHTTTEECBCSCTTCHHHHHHTTCCCC
T ss_pred             HHHHHHHHHhCCCeEEe-CCCccccccCCEEEEEECC------CCHHHHHH-HHHHCCeEEeeccccchHHHHhcCCCCe
Confidence            99999999998888744 443     24455556652      13455655 457779999998543        33689


Q ss_pred             EEEEeeC--ChHhHHHHHHHHHHHHHHhhh
Q 038416          358 LRIAFAA--EPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       358 ~Ri~~~~--~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      +||+++.  ++++++.+++.|+++++.+++
T Consensus       386 iRis~~~~~~~~~i~~~~~~l~~~~~~~~~  415 (420)
T 1t3i_A          386 ARASLYFYNTKEEIDLFLQSLQATIRFFSD  415 (420)
T ss_dssp             EEEECCTTCCHHHHHHHHHHHHHHHHHTC-
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            9999974  899999999999999887653

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=100.00  E-value=1.2e-33  Score=263.69  Aligned_cols=310  Identities=16%  Similarity=0.138  Sum_probs=230.4

Q ss_pred             CCCCCCCcHHHHHHHHHHhc---C-CCCCCCCCCCCcH---HHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHh
Q 038416           20 GVSLLSDSTVAEDAVVDALR---T-AHYNCYSPTLGVP---SARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSV   92 (387)
Q Consensus        20 ~~~~~~~~~~v~~a~~~~~~---~-~~~~~y~~~~~~~---~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~   92 (387)
                      ..|++++++.+.+++.+...   + .....|+. .+.+   ++|+.++++++      .  +++++++|+++++..++.+
T Consensus        26 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~l~~~ia~~~g------~--~~~i~~~~g~~ai~~~~~~   96 (404)
T 1e5e_A           26 IPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTR-LGNPTVSNLEGKIAFLEK------T--EACVATSSGMGAIAATVLT   96 (404)
T ss_dssp             SCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTT-TCCHHHHHHHHHHHHHHT------C--SEEEEESSHHHHHHHHHHH
T ss_pred             CCCCcCCCccccCCHHHHHHhhcCCcCCccccC-CcChHHHHHHHHHHHHhC------C--CcEEEeCChHHHHHHHHHH
Confidence            34488888888877776654   2 22345776 4555   89999999983      2  4788888889999999999


Q ss_pred             hcCCCCeEEEcCCCCcchHH----HhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           93 LARPGANILIPRPGYPLYEI----HAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        93 l~~~g~~vl~~~p~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      ++++||+|+++.|+|+++..    .++  ..|.++..+++.       |++++++++++++++|++++|+||||.+++  
T Consensus        97 l~~~gd~Vl~~~~~y~~~~~~~~~~~~--~~g~~~~~v~~~-------d~~~l~~~i~~~t~~v~l~~p~NptG~v~~--  165 (404)
T 1e5e_A           97 ILKAGDHLISDECLYGCTHALFEHALT--KFGIQVDFINTA-------IPGEVKKHMKPNTKIVYFETPANPTLKIID--  165 (404)
T ss_dssp             HCCTTCEEEEESCCCHHHHHHHHTHHH--HTTCEEEEECTT-------STTHHHHHCCTTEEEEEEESSCTTTCCCCC--
T ss_pred             HhCCCCEEEEeCCCchhHHHHHHHHHH--HcCCEEEEECCC-------CHHHHHHhcCCCCcEEEEECCCCCCCcccC--
Confidence            99999999999999998887    677  789999988763       789999999889999999999999999987  


Q ss_pred             HHHHHHHHHHh-cCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccce-EEEEeeCCCCcccchhH
Q 038416          169 HLQKIARTARN-LGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRL-GWLVTSDPNGILQNSGF  246 (387)
Q Consensus       169 ~~~~l~~~~~~-~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~-G~i~~~~~~~~~~~~~~  246 (387)
                       +++|+++|++ +|+++|+|++|+.+.+.    .++ .+   +..+++.|+||+|+++|.|+ ||+++++        ++
T Consensus       166 -l~~i~~la~~~~~~~li~De~~~~~~~~----~~~-~~---~~di~~~S~sK~~~~~g~ri~G~~~~~~--------~~  228 (404)
T 1e5e_A          166 -MERVCKDAHSQEGVLVIADNTFCSPMIT----NPV-DF---GVDVVVHSATKYINGHTDVVAGLICGKA--------DL  228 (404)
T ss_dssp             -HHHHHHHHHTSTTCEEEEECTTTCTTTC----CGG-GG---TCSEEEEETTTTTTCSSCCCCEEEEECH--------HH
T ss_pred             -HHHHHHHHHhhcCCEEEEECCCchhhhC----Ccc-cc---CCEEEEEcCccccCCCCCCeEEEEEECH--------HH
Confidence             8999999999 99999999999986643    122 22   35699999999999999998 9999976        66


Q ss_pred             HH-HHHhhhhc--cCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCC--------------CCCCCCC
Q 038416          247 VD-SIKGCLNA--ASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIP--------------CITCPVK  309 (387)
Q Consensus       247 ~~-~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------------~~~~~~~  309 (387)
                      ++ .+......  +...+++.++++...++.     +..+.++...+.+.+.+.+++.+              ++.+. .
T Consensus       229 ~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~-~  302 (404)
T 1e5e_A          229 LQQIRMVGIKDITGSVISPHDAWLITRGLST-----LNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIA-K  302 (404)
T ss_dssp             HHHHHHTCCCCCCCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHH-H
T ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHHhHhH-----HHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHH-H
Confidence            66 67665442  456778888888777765     33444555556666656665443              22211 1


Q ss_pred             C----CceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccC--------------------------C-CCeE
Q 038416          310 P----QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG--------------------------M-KNWL  358 (387)
Q Consensus       310 ~----~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~--------------------------~-~~~~  358 (387)
                      +    .++++.| +++.        ..+....++++.|| +.+|..|+                          . ++++
T Consensus       303 ~~~~~~g~~~~~-~~~~--------~~~~~~~~l~~~~i-~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~i  372 (404)
T 1e5e_A          303 KQMRMYGSMITF-ILKS--------GFEGAKKLLDNLKL-ITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMI  372 (404)
T ss_dssp             HHCSSCCSEEEE-EETT--------HHHHHHHHHHTCSS-SEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEE
T ss_pred             hhCCCCceEEEE-EeCC--------CHHHHHHHHHhCCC-ceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeE
Confidence            1    1454444 6652        23445567788898 44544333                          1 5799


Q ss_pred             EEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          359 RIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       359 Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      |||++.  |+++++++.|+++++...
T Consensus       373 Ris~g~--e~~~~li~~l~~al~~~~  396 (404)
T 1e5e_A          373 RLSVGI--EDADELIADFKQGLDALL  396 (404)
T ss_dssp             EEECCS--SCHHHHHHHHHHHHHHHH
T ss_pred             EEEeCC--CCHHHHHHHHHHHHHHHH
Confidence            999988  889999999988887654

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=100.00  E-value=4.9e-34  Score=266.87  Aligned_cols=320  Identities=15%  Similarity=0.146  Sum_probs=239.2

Q ss_pred             CCcHHHHHHHHHHhcCCC--CCC------CCCCCCcHHHHHHHHHHHhhcCCCCC-CCCCEEEcCChHHHHHHHHHhh--
Q 038416           25 SDSTVAEDAVVDALRTAH--YNC------YSPTLGVPSARRGIADYLNRDLPYKL-SPEDVYLTLGCSQAIEISLSVL--   93 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~--~~~------y~~~~~~~~lr~~ia~~~~~~~~~~~-~~~~i~~~~g~~~a~~~~~~~l--   93 (387)
                      +.|+.+.+++.+.+....  ...      |....+..++|+.++++++      . ++++|++|+|+++|+..++.++  
T Consensus        34 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~------~~~~~~v~~~~g~t~a~~~~~~~~~~  107 (406)
T 1kmj_A           34 QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFIN------ARSAEELVFVRGTTEGINLVANSWGN  107 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTT------CSCGGGEEEESSHHHHHHHHHHHTHH
T ss_pred             CCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcC------CCCCCeEEEeCChhHHHHHHHHHhhh
Confidence            578899999999887531  111      1123456788999999883      3 5689999999999999999999  


Q ss_pred             --cCCCCeEEEcCCCCcchH----HHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           94 --ARPGANILIPRPGYPLYE----IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        94 --~~~g~~vl~~~p~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                        +++||+|+++.|+|++..    ..++  ..|.+++.++++.  ++.+|+++|++++++++++|++++|+||||.++| 
T Consensus       108 ~~~~~gd~vl~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~--~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~-  182 (406)
T 1kmj_A          108 SNVRAGDNIIISQMEHHANIVPWQMLCA--RVGAELRVIPLNP--DGTLQLETLPTLFDEKTRLLAITHVSNVLGTENP-  182 (406)
T ss_dssp             HHCCTTCEEEEETTCCGGGTHHHHHHHH--HHTCEEEEECBCT--TSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCC-
T ss_pred             hcCCCCCEEEEecccchHHHHHHHHHHH--hCCCEEEEEecCC--CCCcCHHHHHHHhccCCeEEEEeCCCccccCcCC-
Confidence              899999999999997643    3456  6788999888753  4578999999999888999999999999999999 


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                        +++|.++|+++|+++|+|++|+.+.    ....+..+   +..+++.|+||.++++|  +||+++++        +++
T Consensus       183 --l~~i~~l~~~~~~~li~D~~~~~g~----~~~~~~~~---~~d~~~~s~~K~~g~~G--~G~~~~~~--------~~~  243 (406)
T 1kmj_A          183 --LAEMITLAHQHGAKVLVDGAQAVMH----HPVDVQAL---DCDFYVFSGHKLYGPTG--IGILYVKE--------ALL  243 (406)
T ss_dssp             --HHHHHHHHHHTTCEEEEECTTTTTT----SCCCHHHH---TCSEEEEEGGGTTSCTT--CEEEEECH--------HHH
T ss_pred             --HHHHHHHHHHcCCEEEEEchhhcCC----CCCccccc---CCCEEEEEchhccCCCC--cEEEEEeH--------HHH
Confidence              8899999999999999999998632    11122222   34588999999988777  89999975        666


Q ss_pred             HHHHhhhh----------------------ccCCcchHHHHH-HHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 038416          248 DSIKGCLN----------------------AASHPVTFIQAA-VPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCI  304 (387)
Q Consensus       248 ~~~~~~~~----------------------~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  304 (387)
                      +.+.....                      +..+.+++.+.+ +..+++...+.++++..++++++++++.+.|+++|++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  323 (406)
T 1kmj_A          244 QEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDL  323 (406)
T ss_dssp             HHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTE
T ss_pred             hhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence            66653321                      112234444444 3355554333457788888999999999999998888


Q ss_pred             CCCCCC--CceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCcc--------CCCCeEEEEeeC--ChHhHHHH
Q 038416          305 TCPVKP--QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTV--------GMKNWLRIAFAA--EPATLEDG  372 (387)
Q Consensus       305 ~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~--------~~~~~~Ri~~~~--~~e~~~~~  372 (387)
                      .+. .+  .++++ ++.++.      .+..++... +.++||.+.+|..|        +.++++||+++.  ++++++++
T Consensus       324 ~~~-~~~~~~~~~-~~~~~~------~~~~~~~~~-l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~~  394 (406)
T 1kmj_A          324 TLY-GPQNRLGVI-AFNLGK------HHAYDVGSF-LDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRL  394 (406)
T ss_dssp             EEE-SCTTCCSEE-EEEETT------CCHHHHHHH-HHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHH
T ss_pred             EEe-cCCCcCCEE-EEEECC------CCHHHHHHH-HhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCCCHHHHHHH
Confidence            744 55  55544 445542      144556654 46779999998743        346899999964  89999999


Q ss_pred             HHHHHHHHHHh
Q 038416          373 LERIKAFCQRH  383 (387)
Q Consensus       373 ~~~l~~~~~~~  383 (387)
                      ++.|+++++.+
T Consensus       395 ~~~l~~~~~~l  405 (406)
T 1kmj_A          395 VTGLQRIHRLL  405 (406)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999988765

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=100.00  E-value=4.1e-34  Score=265.35  Aligned_cols=324  Identities=13%  Similarity=0.084  Sum_probs=238.8

Q ss_pred             CCcHHHHHHHHHHhcCCCCC-------CCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc---
Q 038416           25 SDSTVAEDAVVDALRTAHYN-------CYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA---   94 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~-------~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~---   94 (387)
                      ++++.+.+++.+.+......       .|....+..++|+.+++++      ++++++|++|+|+++++..++.++.   
T Consensus        12 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~------g~~~~~v~~~~g~t~a~~~~~~~~~~~~   85 (384)
T 1eg5_A           12 RVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVL------GVSPSEIFFTSCATESINWILKTVAETF   85 (384)
T ss_dssp             CCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHH------TSCGGGEEEESCHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHc------CCCCCeEEEECCHHHHHHHHHHhhhhhc
Confidence            78999999999988752110       0111234578999999998      4567899999999999999999997   


Q ss_pred             -CCCCeEEEcCCCCcchHHHh---hccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHH
Q 038416           95 -RPGANILIPRPGYPLYEIHA---AGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHL  170 (387)
Q Consensus        95 -~~g~~vl~~~p~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~  170 (387)
                       ++||+|+++.|+|+++...+   .  ..|.+++.++++.  ++.+|+++|++++++++++|++++|+||||.+++   +
T Consensus        86 ~~~gd~vl~~~~~~~~~~~~~~~~~--~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---~  158 (384)
T 1eg5_A           86 EKRKRTIITTPIEHKAVLETMKYLS--MKGFKVKYVPVDS--RGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQP---V  158 (384)
T ss_dssp             TTTCCEEEECTTSCHHHHHHHHHHH--HTTCEEEECCBCT--TSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCC---H
T ss_pred             cCCCCEEEECCCCchHHHHHHHHHH--hcCCEEEEEccCC--CCccCHHHHHHHhCCCCeEEEEECCCCCcccccC---H
Confidence             79999999999999876655   6  6799999888753  4578999999999888999999999999999999   6


Q ss_pred             HHHHHHHHhcC--cEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHH
Q 038416          171 QKIARTARNLG--IIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD  248 (387)
Q Consensus       171 ~~l~~~~~~~~--~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~  248 (387)
                      ++|.++|+++|  +++|+|++|+.   ... ...+..+   +..+++.|+||.++++|  +||+++++.-.      +..
T Consensus       159 ~~i~~l~~~~~~~~~li~Dea~~~---~~~-~~~~~~~---~~di~~~s~sK~~g~~G--~G~~~~~~~~~------~~~  223 (384)
T 1eg5_A          159 EDVTRIVKKKNKETLVHVDAVQTI---GKI-PFSLEKL---EVDYASFSAHKFHGPKG--VGITYIRKGVP------IRP  223 (384)
T ss_dssp             HHHHHHHHHHCTTCEEEEECTTTT---TTS-CCCCTTT---CCSEEEEEGGGGTSCTT--CEEEEECTTSC------CCC
T ss_pred             HHHHHHHHhcCCceEEEEEhhhhc---CCc-ccCchhc---CCCEEEecHHHhcCCCc--eEEEEEcCCCc------ccc
Confidence            88889999999  99999999982   221 1122222   34588999999988888  79999976210      011


Q ss_pred             HHHh----hhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCc--eEEEEEecCc
Q 038416          249 SIKG----CLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQG--AMFVMVKLNV  322 (387)
Q Consensus       249 ~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--g~~~~~~~~~  322 (387)
                      .+..    .....++++.+.+.++..+++.. .+++++..++++++++.+.+.|++ +++.+...+.+  +.++++.++.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~  301 (384)
T 1eg5_A          224 LIHGGGQERGLRSGTQNVPGIVGAARAMEIA-VEELSEAAKHMEKLRSKLVSGLMN-LGAHIITPLEISLPNTLSVSFPN  301 (384)
T ss_dssp             SBCSSCTTTTTBCSCCCHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHT-TTCEECSCTTSBCTTEEEEECTT
T ss_pred             ccccCcccccccCCCCChHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHhCC-CCeEEeCCcccCCCCEEEEEeCC
Confidence            1111    01134567888888888888753 346788889999999999999988 47774422221  2355555542


Q ss_pred             ccccCCCcHHHHHHHHHHhcCeEEEcCCccCC-------------------CCeEEEEee--CChHhHHHHHHHHHHHHH
Q 038416          323 SMLEDIGDDLEFCLKLAKEESVIILPGRTVGM-------------------KNWLRIAFA--AEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       323 ~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-------------------~~~~Ri~~~--~~~e~~~~~~~~l~~~~~  381 (387)
                            .+..++...+ .++||.+.+|..|..                   .+++||+++  .+++++++++++|+++++
T Consensus       302 ------~~~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  374 (384)
T 1eg5_A          302 ------IRGSTLQNLL-SGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILS  374 (384)
T ss_dssp             ------CCHHHHHHHH-HHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ------CCHHHHHHHH-hhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence                  1455666665 678999999876642                   368999997  689999999999999998


Q ss_pred             Hhhh
Q 038416          382 RHAK  385 (387)
Q Consensus       382 ~~~~  385 (387)
                      ++++
T Consensus       375 ~~~~  378 (384)
T 1eg5_A          375 FLDL  378 (384)
T ss_dssp             HC--
T ss_pred             HHHh
Confidence            7653

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=100.00  E-value=3.6e-33  Score=260.47  Aligned_cols=333  Identities=13%  Similarity=0.068  Sum_probs=243.7

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCC----CC--CCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCCh
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHY----NC--YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGC   82 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~----~~--y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~   82 (387)
                      .+++.+.+++   .+++.++.+.+++.+.+.....    ..  |+......++|+.++++++      .  ++.+++++|
T Consensus        44 ~~id~~~~~~---~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~------~--~~~i~~~sG  112 (399)
T 3tqx_A           44 EVLNFCANNY---LGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLG------T--DDTILYSSC  112 (399)
T ss_dssp             EEEECSSCCT---TSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHT------C--SEEEEESCH
T ss_pred             eEEEeeccCc---ccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHC------C--CcEEEECch
Confidence            4556656533   2345789999999988865110    11  2222336888999998883      2  234444556


Q ss_pred             HHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc------CceEEEEeC
Q 038416           83 SQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE------NTVAIVIIN  156 (387)
Q Consensus        83 ~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~  156 (387)
                      ++++..++.+++++||.|+++.|+|.++...++  ..|.++..++.       .|++++++++++      ++++|++++
T Consensus       113 t~a~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~--~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~~~~  183 (399)
T 3tqx_A          113 FDANGGLFETLLGPEDAIISDELNHASIIDGIR--LCKAQRYRYKN-------NAMGDLEAKLKEADEKGARFKLIATDG  183 (399)
T ss_dssp             HHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHH--SCCSEEEEECT-------TCTTHHHHHHHHHHTTTCSSEEEEEES
T ss_pred             HHHHHHHHHHhcCCCCEEEECCcccHHHHHHHH--HcCCceeEeCC-------CCHHHHHHHHHhhhccCCCceEEEEeC
Confidence            889999999999999999999999999999999  99999988875       367788887765      789999999


Q ss_pred             CCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccC-CCccEEEEecCcccccccccceEEEEee
Q 038416          157 PGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFG-SIVPVITLGSISKRWIVPGWRLGWLVTS  235 (387)
Q Consensus       157 p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~s~sK~~~~~g~r~G~i~~~  235 (387)
                      |+||||.+++   +++|.++|+++|+++|+|++|+...+...........+ ..+..++++|+||+++  |.+.||++++
T Consensus       184 ~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~--g~~gG~~~~~  258 (399)
T 3tqx_A          184 VFSMDGIIAD---LKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALG--GASGGYTSGH  258 (399)
T ss_dssp             EETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSC--SSCCEEEEEC
T ss_pred             CCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcc--cCceEEEEcC
Confidence            9999999999   88999999999999999999973222222111121121 1234589999999987  4455999987


Q ss_pred             CCCCcccchhHHHHHHhhh---hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCc
Q 038416          236 DPNGILQNSGFVDSIKGCL---NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQG  312 (387)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  312 (387)
                      +        ++++.+....   ..+.++++..+.++...++... .+.++..++++++++++.+.|+++ ++.+.  +..
T Consensus       259 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~  326 (399)
T 3tqx_A          259 K--------EIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLK-TEGPQLRKQLQENSRYFRAGMEKL-GFQLV--PGN  326 (399)
T ss_dssp             H--------HHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHH-TCCBC--CCS
T ss_pred             H--------HHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHc-CCCcC--CCC
Confidence            6        6777777642   2344677777777777776422 557888899999999999999988 77733  445


Q ss_pred             eEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccC---CCCeEEEEee--CChHhHHHHHHHHHHHHHHhh
Q 038416          313 AMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG---MKNWLRIAFA--AEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       313 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~---~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      +.++|+.++..     .+..++...+++ +||.+.|+..+.   ..+++|++++  .+++++++++++|+++++++.
T Consensus       327 ~~~~~~~~~~~-----~~~~~~~~~l~~-~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  397 (399)
T 3tqx_A          327 HPIIPVMLGDA-----QLATNMADHLLQ-EGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKLG  397 (399)
T ss_dssp             SSEEEEEEECH-----HHHHHHHHHHHH-TTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEeCCH-----HHHHHHHHHHHH-CCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHHHhc
Confidence            66778777532     134567776654 699999865442   2368999995  689999999999999998753

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=100.00  E-value=1.3e-33  Score=263.06  Aligned_cols=321  Identities=14%  Similarity=0.057  Sum_probs=242.7

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCC--CCCcHHHHHHHHHHHhhcCCCCCCCC-CEEEcCChHHHHHHHHHhhcCCCCeE
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSP--TLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIEISLSVLARPGANI  100 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~--~~~~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~g~~v  100 (387)
                      +++++.+.+++.+.+..    +|.+  .....++|+.+++++      +++++ +|++|+|+++++..++.+++++||+|
T Consensus        28 ~~~~~~v~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~------g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~v   97 (393)
T 2huf_A           28 SNAPQRVLDAMSRPILG----HLHPETLKIMDDIKEGVRYLF------QTNNIATFCLSASGHGGMEATLCNLLEDGDVI   97 (393)
T ss_dssp             CCCCHHHHHHTTSCCCC----TTSHHHHHHHHHHHHHHHHHH------TCCCSEEEEESSCHHHHHHHHHHHHCCTTCEE
T ss_pred             CCCCHHHHHHHHhhhcc----CCCHHHHHHHHHHHHHHHHHh------CCCCCcEEEEcCcHHHHHHHHHHHHhCCCCEE
Confidence            57889999988776643    2322  235678888888888      34554 89999999999999999999999999


Q ss_pred             EEcCCCCcch--HHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCccccCCHHHHHHHHHHH
Q 038416          101 LIPRPGYPLY--EIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCGNVFSYQHLQKIARTA  177 (387)
Q Consensus       101 l~~~p~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~~~~l~~~~  177 (387)
                      +++.|+|+++  ...++  ..|.+++.++++.  ++.+|++++++++++ ++++|++++|+||||..+|   +++|.++|
T Consensus        98 l~~~~~~~~~~~~~~~~--~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~~~  170 (393)
T 2huf_A           98 LIGHTGHWGDRSADMAT--RYGADVRVVKSKV--GQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQG---LEGVGALC  170 (393)
T ss_dssp             EEEESSHHHHHHHHHHH--HTTCEEEEEECCT--TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHH
T ss_pred             EEECCCcchHHHHHHHH--HcCCeeEEEeCCC--CCCCCHHHHHHHHhccCCcEEEEEccCCCccccCC---HHHHHHHH
Confidence            9999999874  33445  6899999998753  346899999999987 8999999999999999998   78999999


Q ss_pred             HhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccc-cccccceEEEEeeCCCCcccchhHHHHHHhhh--
Q 038416          178 RNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRW-IVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL--  254 (387)
Q Consensus       178 ~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~-~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~--  254 (387)
                      +++|+++|+|++++..    .....+..+   +..+++.|+||++ +++|+  ||+++++        ++++.+....  
T Consensus       171 ~~~~~~li~D~a~~~~----~~~~~~~~~---~~d~~~~s~sK~l~g~~G~--G~~~~~~--------~~~~~~~~~~~~  233 (393)
T 2huf_A          171 HQHNCLLIVDTVASLG----GAPMFMDRW---EIDAMYTGSQKVLGAPPGI--TPVSFSH--------RAVERYKRRNTK  233 (393)
T ss_dssp             HHTTCEEEEECTTTBT----TBCCCTTTT---TCSEEECCSSSTTCCCSSC--EEEEECH--------HHHHHHHTCSSC
T ss_pred             HHcCCEEEEEcccccC----CCCcchhhc---CccEEEECCCcccccCCCe--EEEEECH--------HHHHHHhhcCCC
Confidence            9999999999998731    111122222   3458889999974 56775  9999865        6777665431  


Q ss_pred             --h--------------------ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC-
Q 038416          255 --N--------------------AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ-  311 (387)
Q Consensus       255 --~--------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-  311 (387)
                        .                    ...+++...+.++..+++...+..+++..++++++++++.+.|+++ ++.+. .+. 
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~  311 (393)
T 2huf_A          234 VKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDA-GFELY-ADPK  311 (393)
T ss_dssp             CSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBS-SCGG
T ss_pred             CceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-CCeec-cCcc
Confidence              0                    1124556666666666665333457788889999999999999988 77744 442 


Q ss_pred             --ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe-e--CChHhHHHHHHHHHHHHHHhhh
Q 038416          312 --GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF-A--AEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       312 --~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~-~--~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                        .+.++++.++..     .+..++...|++++||.+.+|..+...+++||++ +  .+++++++++++|++++++++.
T Consensus       312 ~~~~~~~~~~~~~~-----~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~~  385 (393)
T 2huf_A          312 DRLSTVTTIKVPQG-----VDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVKP  385 (393)
T ss_dssp             GBCTTEEEEECCTT-----CCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCC
T ss_pred             ccCCcEEEEEcCCC-----CCHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcCC
Confidence              244777777521     1456777777666799999998776678999999 5  4688999999999999987654

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=100.00  E-value=2.8e-33  Score=260.61  Aligned_cols=322  Identities=13%  Similarity=0.048  Sum_probs=238.8

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEc
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIP  103 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~  103 (387)
                      .+.++.+.+++.+.+... . .+....+..++|+.+++++      +++++++++|+|+++++..++.+++++||+|+++
T Consensus        18 ~~~~~~v~~a~~~~~~~~-~-~~~~~~~~~~l~~~la~~~------g~~~~~v~~t~g~t~a~~~~~~~~~~~gd~Vl~~   89 (392)
T 2z9v_A           18 VNAYPEVLRGLGRTVLYD-Y-DPAFQLLYEKVVDKAQKAM------RLSNKPVILHGEPVLGLEAAAASLISPDDVVLNL   89 (392)
T ss_dssp             CCCCHHHHHHTTSCCCCT-T-SHHHHHHHHHHHHHHHHHT------TCSSCCEEESSCTHHHHHHHHHHHCCTTCCEEEE
T ss_pred             cCCCHHHHHHHhcccccc-c-cHHHHHHHHHHHHHHHHHh------CCCCCEEEEeCCchHHHHHHHHHhcCCCCEEEEe
Confidence            468889999888766531 1 1111234578888888887      3467899999999999999999999999999999


Q ss_pred             CCCCcch--HHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc--cCceEEEEeCCCCCccccCCHHHHHHHHHHHHh
Q 038416          104 RPGYPLY--EIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD--ENTVAIVIINPGNPCGNVFSYQHLQKIARTARN  179 (387)
Q Consensus       104 ~p~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~  179 (387)
                      .|+|+++  ...+.  ..|.+++.++++.  ++.+|+++++++++  +++++|++++|+||||..++   +++|.++|++
T Consensus        90 ~~~~~~~~~~~~~~--~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~  162 (392)
T 2z9v_A           90 ASGVYGKGFGYWAK--RYSPHLLEIEVPY--NEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINP---IDAIGALVSA  162 (392)
T ss_dssp             ESSHHHHHHHHHHH--HHCSCEEEEECCT--TSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECC---HHHHHHHHHH
T ss_pred             cCCcccHHHHHHHH--HcCCceEEeeCCC--CCCCCHHHHHHHHhcCCCCcEEEEeccCCCCceecc---HHHHHHHHHH
Confidence            9999875  33445  5788999998753  33689999999984  57899999999999999998   7899999999


Q ss_pred             cCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccc-cccccceEEEEeeCCCCcccchhHHHHHHhhh----
Q 038416          180 LGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRW-IVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL----  254 (387)
Q Consensus       180 ~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~-~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~----  254 (387)
                      +|+++|+|++|+..    .....+..+.   ..+++.|+||++ +++|  +||+++++        ++++.++...    
T Consensus       163 ~~~~li~D~a~~~g----~~~~~~~~~~---~d~~~~s~sK~~~~~~g--~G~l~~~~--------~~~~~l~~~~~g~~  225 (392)
T 2z9v_A          163 HGAYLIVDAVSSFG----GMKTHPEDCK---ADIYVTGPNKCLGAPPG--LTMMGVSE--------RAWAKMKANPLAPR  225 (392)
T ss_dssp             TTCEEEEECTTTBT----TBSCCGGGGT---CSEEEECSSSTTCCCSC--CEEEEECH--------HHHHHHHTCTTSCC
T ss_pred             cCCeEEEEcccccC----Cccccccccc---ceEEEecCcccccCCCc--eeEEEECH--------HHHHHhhhccCCCC
Confidence            99999999999842    1111232222   348899999964 3455  59999875        6666664310    


Q ss_pred             -----------------hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----ce
Q 038416          255 -----------------NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ----GA  313 (387)
Q Consensus       255 -----------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~g  313 (387)
                                       ...++++...+.++..+++...+..+++..++++++++++.+.|+++ ++.+. .|.    .+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~  303 (392)
T 2z9v_A          226 ASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM-GLSVW-AASDSIASP  303 (392)
T ss_dssp             SSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBS-SSSGGGBCT
T ss_pred             ceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-CCeec-cCCccccCC
Confidence                             12234555566666666664333336788889999999999999888 77744 322    35


Q ss_pred             EEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe-e--CChHhHHHHHHHHHHHHHHhh
Q 038416          314 MFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF-A--AEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~-~--~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      .++++.++..     .+..++...+.+++||.+.+|..+...+++||++ +  .+++++++++++|+++++++.
T Consensus       304 ~~~~~~~~~~-----~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~~  372 (392)
T 2z9v_A          304 TTTAVRTPDG-----VDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMNAAG  372 (392)
T ss_dssp             TEEEEECCTT-----CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred             ceEEEECCCC-----CCHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHHHcC
Confidence            6777777521     1456777777555699999988766678999996 4  689999999999999998765

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=100.00  E-value=7.9e-33  Score=256.89  Aligned_cols=325  Identities=12%  Similarity=0.031  Sum_probs=240.8

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcC-CC---CCCC--CCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCCh
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRT-AH---YNCY--SPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGC   82 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~-~~---~~~y--~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~   82 (387)
                      .+++.+.|.+   +++++++.+.+++.+.+.. ..   ...|  +...+..++|+.++++++      ++  +.++++++
T Consensus        40 ~~id~~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g------~~--~~i~~~sG  108 (384)
T 1bs0_A           40 QYLNFSSNDY---LGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLG------YS--RALLFISG  108 (384)
T ss_dssp             EEEECSCCCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT------CS--EEEEESCH
T ss_pred             eEEEeeccCc---cCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhC------CC--cEEEeCCc
Confidence            3455555432   3556889999999998865 21   1123  334567899999999983      32  45555556


Q ss_pred             HHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccC---ceEEEEeCCCC
Q 038416           83 SQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADEN---TVAIVIINPGN  159 (387)
Q Consensus        83 ~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~v~l~~p~n  159 (387)
                      ++++..++.++.++||.|+++.|+|..+...++  ..|.+++.+|.       .|+++++++++++   ++++++++|+|
T Consensus       109 t~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~--~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~v~~~~~~n  179 (384)
T 1bs0_A          109 FAANQAVIAAMMAKEDRIAADRLSHASLLEAAS--LSPSQLRRFAH-------NDVTHLARLLASPCPGQQMVVTEGVFS  179 (384)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH--TSSSEEEEECT-------TCHHHHHHHHHSCCSSCEEEEEESBCT
T ss_pred             HHHHHHHHHHhCCCCcEEEEcccccHHHHHHHH--HcCCCEEEeCC-------CCHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            899999999999999999999999999998999  89999988873       3788999888653   77888899999


Q ss_pred             CccccCCHHHHHHHHHHHHhcCcEEeecccccccccC--CCCCccccccCCCccEEEEecCcccccccccceEEEEeeCC
Q 038416          160 PCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFG--STPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDP  237 (387)
Q Consensus       160 ptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~  237 (387)
                      |||.+++   +++|.++|+++|+++|+|++|+.+.+.  +...  ...++. ...++++|+||+++++|   ||+++++ 
T Consensus       180 ptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~--~~~~~~-~~di~~~s~sK~~~~~G---G~~~~~~-  249 (384)
T 1bs0_A          180 MDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGS--CWLQKV-KPELLVVTFGKGFGVSG---AAVLCSS-  249 (384)
T ss_dssp             TTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCH--HHHTTC-CCSEEEEESSSTTSSCC---EEEEECH-
T ss_pred             CCCCccC---HHHHHHHHHHcCcEEEEECCcccceecCCCCch--HHhcCC-CCcEEEeeccchhhccC---cEEEeCH-
Confidence            9999998   788999999999999999999865432  2211  112221 22388999999998766   9999865 


Q ss_pred             CCcccchhHHHHHHhhh---hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceE
Q 038416          238 NGILQNSGFVDSIKGCL---NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAM  314 (387)
Q Consensus       238 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~  314 (387)
                             ++++.+....   ..+.+++++.+.++.++++...+.+.++..++++++++.+.+.|+++ ++. + .+..++
T Consensus       250 -------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~~~~~  319 (384)
T 1bs0_A          250 -------TVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL-PFT-L-ADSCSA  319 (384)
T ss_dssp             -------HHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCE-E-CSCCSS
T ss_pred             -------HHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc-CCc-c-cCCCCC
Confidence                   6777776542   22335778888877777765322256778889999999999999988 676 3 345566


Q ss_pred             EEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC---CCeEEEEeeC--ChHhHHHHHHHHHHH
Q 038416          315 FVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM---KNWLRIAFAA--EPATLEDGLERIKAF  379 (387)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---~~~~Ri~~~~--~~e~~~~~~~~l~~~  379 (387)
                      ++|+.++..     .+..++...+. ++||.+.+|..++.   .+++||+++.  +++++++++++|+++
T Consensus       320 ~~~~~~~~~-----~~~~~l~~~l~-~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~  383 (384)
T 1bs0_A          320 IQPLIVGDN-----SRALQLAEKLR-QQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN  383 (384)
T ss_dssp             BCCEEEESH-----HHHHHHHHHHH-HTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCH-----HHHHHHHHHHH-HCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence            777777521     13456666665 45999999877643   3789999964  899999999998764

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=100.00  E-value=5.2e-34  Score=263.54  Aligned_cols=316  Identities=12%  Similarity=0.078  Sum_probs=233.9

Q ss_pred             CCCCcHHHHHHHHHHhcCCC--------CCCCCCCCCcHHHHHH-HHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh
Q 038416           23 LLSDSTVAEDAVVDALRTAH--------YNCYSPTLGVPSARRG-IADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL   93 (387)
Q Consensus        23 ~~~~~~~v~~a~~~~~~~~~--------~~~y~~~~~~~~lr~~-ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l   93 (387)
                      ..++++.+.+++.+.+....        ...|.+..+..++|+. ++++++      .+  +|++|+|+++|+..++.++
T Consensus        18 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~------~~--~v~~~~g~t~a~~~~~~~~   89 (371)
T 2e7j_A           18 GGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLG------CD--VARVTNGAREAKFAVMHSL   89 (371)
T ss_dssp             TCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTT------SS--EEEEESSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcC------CC--EEEEeCChHHHHHHHHHHH
Confidence            35688999999999876531        1123445788999999 999983      33  9999999999999999999


Q ss_pred             cCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc-----cCceEEEEeCCCCCccccCCHH
Q 038416           94 ARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD-----ENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        94 ~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      +++||+|+++.|+|+++...++  ..|.+++.++.....++.+|+++|+++++     ++++++++++|+||||.+++  
T Consensus        90 ~~~gd~vl~~~~~~~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~--  165 (371)
T 2e7j_A           90 AKKDAWVVMDENCHYSSYVAAE--RAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD--  165 (371)
T ss_dssp             CCTTCEEEEETTCCHHHHHHHH--HTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCC--
T ss_pred             hCCCCEEEEccCcchHHHHHHH--HcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCC--
Confidence            9999999999999999998888  89999999982113346889999999987     68899999999999999998  


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD  248 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~  248 (387)
                       +++|.++|+++|+++|+|++|+.+...    .++..++.   .+++.|+||+++.+ .|+||+++++        ++++
T Consensus       166 -~~~i~~~~~~~~~~li~D~a~~~~~~~----~~~~~~~~---di~~~s~sK~~~~~-~~~G~~~~~~--------~~~~  228 (371)
T 2e7j_A          166 -VKKIAKVCSEYDVPLLVNGAYAIGRMP----VSLKEIGA---DFIVGSGHKSMAAS-GPIGVMGMKE--------EWAE  228 (371)
T ss_dssp             -HHHHHHHHHTTTCCEEEECTTTBTTBC----CCHHHHTC---SEEEEEHHHHSSCC-SSCEEEEECT--------TTTT
T ss_pred             -HHHHHHHHHHcCCeEEEECccccCCCC----CChhhcCC---CEEEecCCcCCCCC-CCcEEEEEec--------hhhh
Confidence             688899999999999999999974421    12333332   38899999987655 4999999976        3444


Q ss_pred             H-HHhhhh---c-----cCCcchHHHHHHHHHhhhccHHHHHHHHHHH--HHHHHHHHHHhhcCCCCCCCCCCC--ceEE
Q 038416          249 S-IKGCLN---A-----ASHPVTFIQAAVPRIVDETNEAFFAKIIGLL--KETADICYERIKEIPCITCPVKPQ--GAMF  315 (387)
Q Consensus       249 ~-~~~~~~---~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~--~g~~  315 (387)
                      . +.....   .     .++++...+.++..+++...+    +..+++  +++++++.+.|+++ ++.+. .+.  .+.+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~  302 (371)
T 2e7j_A          229 IVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRE----RIKRWDEEVEKARRFAAEMEKL-GIKQL-GDNPHNHDL  302 (371)
T ss_dssp             TTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHH----HGGGHHHHHHHHHHHHHHHHHT-TCEEE-SSSSCCSSE
T ss_pred             hhccccccCcccccccccCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHc-CcEEe-cCCCccCce
Confidence            4 333221   1     345566666666566654221    456667  78888899999888 77744 343  3567


Q ss_pred             EEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC------CCeEE-EEee---CChHhHHHHHHHHHHHHHHh
Q 038416          316 VMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM------KNWLR-IAFA---AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~------~~~~R-i~~~---~~~e~~~~~~~~l~~~~~~~  383 (387)
                      +|++++        +..++...+ .++||.+.| ..+..      ++++| ++++   .+++++++++++|+++++++
T Consensus       303 ~~~~~~--------~~~~~~~~l-~~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~~  370 (371)
T 2e7j_A          303 MFFHAE--------VLYEISKKA-KGGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEKY  370 (371)
T ss_dssp             EEEECH--------HHHHHHHHS-SSGGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             EEEECC--------CHHHHHHHH-HHCCEEEEe-ccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHhc
Confidence            888774        244566655 477999888 43322      67899 9997   68999999999999988764

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=100.00  E-value=2.7e-32  Score=256.70  Aligned_cols=334  Identities=13%  Similarity=0.059  Sum_probs=245.3

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcC-CC-CCCCCCCCC----cHHHHHHHHHHHhhcCCCCCCCCCEEEcCCh
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRT-AH-YNCYSPTLG----VPSARRGIADYLNRDLPYKLSPEDVYLTLGC   82 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~-~~-~~~y~~~~~----~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~   82 (387)
                      .+++++.+++   .++..++.+.+++.+++.. .. ...|....|    ..++++.++++++      .  ++.+++++|
T Consensus        65 ~~id~~~~~~---lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g------~--~~~i~~~sG  133 (427)
T 2w8t_A           65 DTILLGTYNY---MGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYG------T--TGAIVFSTG  133 (427)
T ss_dssp             EEEECSCCCT---TCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHT------C--SEEEEESCH
T ss_pred             eEEEEECccc---ccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhC------C--CceEEecCc
Confidence            3556666542   3556889999999998865 21 112222233    4788888888872      2  356667777


Q ss_pred             HHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc----CceEEEEeCCC
Q 038416           83 SQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE----NTVAIVIINPG  158 (387)
Q Consensus        83 ~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~v~l~~p~  158 (387)
                      ++++..++.++.++||.|+++.|+|.++...++  ..|.+++.++.       .|+++|++++++    ++++|++++++
T Consensus       134 s~a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~--~~g~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~~~~~~  204 (427)
T 2w8t_A          134 YMANLGIISTLAGKGEYVILDADSHASIYDGCQ--QGNAEIVRFRH-------NSVEDLDKRLGRLPKEPAKLVVLEGVY  204 (427)
T ss_dssp             HHHHHHHHHHHSCTTCEEEEETTCCHHHHHHHH--HSCSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEEEESEE
T ss_pred             HHHHHHHHHHhcCCCCEEEECCcccHHHHHHHH--HcCCeeEEeCC-------CCHHHHHHHHHhccCCCCeEEEEcCCC
Confidence            789999999999999999999999999999988  88998887763       488999998865    68899999999


Q ss_pred             CCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccC-CCccEEEEecCcccccccccceEEEEeeCC
Q 038416          159 NPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFG-SIVPVITLGSISKRWIVPGWRLGWLVTSDP  237 (387)
Q Consensus       159 nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~  237 (387)
                      ||||.+++   +++|.++|+++|+++|+||+|+.+.+..........++ ..+.++++.|+||+++++|   ||+++++ 
T Consensus       205 n~tG~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g~~g---G~v~~~~-  277 (427)
T 2w8t_A          205 SMLGDIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTVG---GFVVSNH-  277 (427)
T ss_dssp             TTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSCC---EEEEECC-
T ss_pred             CCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhccCC---CEEEeCH-
Confidence            99999988   88999999999999999999998776532211111122 1234688999999988666   9999875 


Q ss_pred             CCcccchhHHHHHHhhh---hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceE
Q 038416          238 NGILQNSGFVDSIKGCL---NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAM  314 (387)
Q Consensus       238 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~  314 (387)
                             ++++.+....   ..+.++++..+.++..+++...  .+++..++++++++++.+.|+++ ++.+...+..+.
T Consensus       278 -------~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~  347 (427)
T 2w8t_A          278 -------PKFEAVRLACRPYIFTASLPPSVVATATTSIRKLM--TAHEKRERLWSNARALHGGLKAM-GFRLGTETCDSA  347 (427)
T ss_dssp             -------TTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHHHHHH-TCEESCSSCCSS
T ss_pred             -------HHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc-CCcccCCCCCCC
Confidence                   4555555431   2345566767666667776532  24677888889999999999887 676331332567


Q ss_pred             EEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC---CCeEEEEeeC--ChHhHHHHHHHHHHHHHHhhh
Q 038416          315 FVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM---KNWLRIAFAA--EPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---~~~~Ri~~~~--~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      ++|+.++..     .+..++...+++ +||.+.++..|..   .+++||+++.  +++++++++++|+++++++.+
T Consensus       348 ~~~~~~~~~-----~~~~~l~~~L~~-~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~~~  417 (427)
T 2w8t_A          348 IVAVMLEDQ-----EQAAMMWQALLD-GGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAVGV  417 (427)
T ss_dssp             EEEEEESSH-----HHHHHHHHHHHH-TTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEEECCH-----HHHHHHHHHHHH-CCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCc
Confidence            888887531     134566666654 5999999876654   3589999974  899999999999999987653

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=100.00  E-value=3.3e-33  Score=259.90  Aligned_cols=319  Identities=13%  Similarity=0.093  Sum_probs=237.3

Q ss_pred             CCCcHHHHHHHHHHhcCCC---CC---CCCC-CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh-cC
Q 038416           24 LSDSTVAEDAVVDALRTAH---YN---CYSP-TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL-AR   95 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~---~~---~y~~-~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~   95 (387)
                      .+.|+.+.+++.+.+....   ..   .|+. ..+..++|+.+++++      ++++++|++|+|+++++..++.++ .+
T Consensus        26 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~------g~~~~~v~~~~g~t~a~~~~~~~~~~~   99 (390)
T 1elu_A           26 GILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETF------NVDPNTITITDNVTTGCDIVLWGLDWH   99 (390)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHT------TSCGGGEEEESSHHHHHHHHHHHSCCC
T ss_pred             CCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHc------CCCHHHEEEeCChHHHHHHHHhCCCCC
Confidence            3577889999998876421   01   2332 246788999999998      456789999999999999999999 79


Q ss_pred             CCCeEEEcCCCCcchHHH----hhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHH
Q 038416           96 PGANILIPRPGYPLYEIH----AAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQ  171 (387)
Q Consensus        96 ~g~~vl~~~p~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~  171 (387)
                      +||+|+++.|+|+++...    ++  ..|.+++.+++++.+++.+|++++++++++++++|++++|+||||.+++   ++
T Consensus       100 ~gd~vl~~~~~~~~~~~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---~~  174 (390)
T 1elu_A          100 QGDEILLTDCEHPGIIAIVQAIAA--RFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLP---LA  174 (390)
T ss_dssp             TTCEEEEETTCCHHHHHHHHHHHH--HHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCC---HH
T ss_pred             CCCEEEEecCcccHHHHHHHHHHH--HhCcEEEEEcCCCCCCccchHHHHHHhcCCCceEEEEeccccCCceecC---HH
Confidence            999999999999987643    45  5788999998764356778999999999888999999999999999999   88


Q ss_pred             HHHHHHH----hcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          172 KIARTAR----NLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       172 ~l~~~~~----~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      +|.++|+    ++|+++|+|++|+...    ....+..   ....+++.|++|+ ..+|.++||+++++        +++
T Consensus       175 ~i~~l~~~~~~~~~~~li~Dea~~~g~----~~~~~~~---~~~d~~~~s~~K~-~~~~~g~G~~~~~~--------~~~  238 (390)
T 1elu_A          175 EIMAVCRRHQGNYPVRVLVDGAQSAGS----LPLDFSR---LEVDYYAFTGHKW-FAGPAGVGGLYIHG--------DCL  238 (390)
T ss_dssp             HHHHHHHHCCSSSCCEEEEECTTTBTT----BCCCTTT---SCCSEEEEESSST-TCCCTTCEEEEECT--------TTG
T ss_pred             HHHHHHhhhhhhcCcEEEEEcccccCC----cCCChhh---cCCCEEEcccccc-ccCCCceEEEEECH--------HhH
Confidence            8999999    9999999999998421    1112222   2345889999994 35566799999975        344


Q ss_pred             HHHHhh-----------------------hhccCCcchHHHHHHHHHhhhccH-HHHHHHHHHHHHHHHHHHHHhhcCCC
Q 038416          248 DSIKGC-----------------------LNAASHPVTFIQAAVPRIVDETNE-AFFAKIIGLLKETADICYERIKEIPC  303 (387)
Q Consensus       248 ~~~~~~-----------------------~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~  303 (387)
                      +.+...                       ....++++...+.++..+++...+ .++++..++++++++.+.+.|+++++
T Consensus       239 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  318 (390)
T 1elu_A          239 GEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPH  318 (390)
T ss_dssp             GGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             hhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            443321                       111245566677766666654332 24788889999999999999999878


Q ss_pred             CCCCCC-CCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHH
Q 038416          304 ITCPVK-PQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKA  378 (387)
Q Consensus       304 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~  378 (387)
                      +.++.. +..+.+++++++..     .+..++...+ .++||.+.+|.   .++++||+++  .+++++++++++|++
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l-~~~gi~v~~~~---~~~~iRis~~~~~~~~~i~~~~~~l~~  387 (390)
T 1elu_A          319 VHCLATSAPQAGLVSFTVDSP-----LGHRAIVQKL-EEQRIYLRTIA---DPDCIRACCHYITDEEEINHLLARLAD  387 (390)
T ss_dssp             EEESCSSCCSSSEEEEEECSS-----SCHHHHHHHH-HHTTEECEEET---TTTEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred             cEEecCccccccEEEEEcCCC-----CCHHHHHHHH-HHCCEEEEecC---CCCeEEEecccCCCHHHHHHHHHHHHh
Confidence            774421 22344555577421     1455677766 56799999875   3589999984  689999999998864

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=100.00  E-value=1.1e-32  Score=257.31  Aligned_cols=322  Identities=16%  Similarity=0.100  Sum_probs=234.9

Q ss_pred             CCCCcHHHHHHHHHHhcC-CC-----CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc--
Q 038416           23 LLSDSTVAEDAVVDALRT-AH-----YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA--   94 (387)
Q Consensus        23 ~~~~~~~v~~a~~~~~~~-~~-----~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--   94 (387)
                      .++.+|.+.+++.+.+.. ..     ...|+...+..++|+.++++++      . +++|++++|++ ++..++..+.  
T Consensus        58 ~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~------~-~~~i~~~sG~~-a~~~~~~~l~~~  129 (401)
T 2bwn_A           58 GMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ------K-EAALVFSSAYN-ANDATLSTLRVL  129 (401)
T ss_dssp             SGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTT------C-SEEEEESCHHH-HHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhC------C-CcEEEECCcHH-HHHHHHHHHhcC
Confidence            345678899999998864 11     1134444567899999999983      2 46778877655 7777777654  


Q ss_pred             CCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc----cCceEEEEeCCCCCccccCCHHHH
Q 038416           95 RPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD----ENTVAIVIINPGNPCGNVFSYQHL  170 (387)
Q Consensus        95 ~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~v~l~~p~nptG~~~~~~~~  170 (387)
                      ++||.|+++.|+|+++...++  ..|.+++.++.+       |++++++.++    +++++|++++|+||||.+++   +
T Consensus       130 ~~gd~Vl~~~~~~~~~~~~~~--~~g~~~~~v~~~-------d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~---l  197 (401)
T 2bwn_A          130 FPGLIIYSDSLNHASMIEGIK--RNAGPKRIFRHN-------DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP---I  197 (401)
T ss_dssp             STTCEEEEETTCCHHHHHHHH--HSCCCEEEECTT-------CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC---H
T ss_pred             CCCCEEEECchhhHHHHHHHH--HcCCeEEEEcCC-------CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCC---H
Confidence            589999999999999988888  899999888752       6788888775    57899999999999999998   7


Q ss_pred             HHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHH
Q 038416          171 QKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDS  249 (387)
Q Consensus       171 ~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~  249 (387)
                      ++|.++|+++|+++|+|++|+...++..+...+..... ....++++|+||+++++|   ||+++++        ++++.
T Consensus       198 ~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G---G~~~~~~--------~~~~~  266 (401)
T 2bwn_A          198 KEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG---GYIAASA--------RMVDA  266 (401)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC---EEEEECH--------HHHHH
T ss_pred             HHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCCC---CEEecCH--------HHHHH
Confidence            89999999999999999999954343221111111111 123588999999998887   9999864        67777


Q ss_pred             HHhhh---hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccccc
Q 038416          250 IKGCL---NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE  326 (387)
Q Consensus       250 ~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~  326 (387)
                      +....   ....+.+++.+.++..+++...+..+++..++++++++++.+.|+++ ++.+. .+.++ ++|+.++..   
T Consensus       267 l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~-~~~~~~~~~---  340 (401)
T 2bwn_A          267 VRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPII-DHGSH-IVPVVIGDP---  340 (401)
T ss_dssp             HHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCSSS-CEEEECCCH---
T ss_pred             HHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC-CCccc-CCCCC-eEEEEeCCh---
Confidence            66432   22233445677777777765444445778888999999999999887 77744 55544 778877531   


Q ss_pred             CCCcHHHHHHHHHHhcCeEEEcCCccCCC---CeEEEEee--CChHhHHHHHHHHHHHHHHh
Q 038416          327 DIGDDLEFCLKLAKEESVIILPGRTVGMK---NWLRIAFA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       327 ~~~~~~~~~~~ll~~~gi~v~~g~~~~~~---~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                        .+..++...+++++||.+.|+..|+.+   +++|++++  .+++++++++++|+++++++
T Consensus       341 --~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~~  400 (401)
T 2bwn_A          341 --VHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWARC  400 (401)
T ss_dssp             --HHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred             --HHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence              134566667765779999998766543   58999996  58999999999999887653

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=100.00  E-value=5.9e-33  Score=254.57  Aligned_cols=318  Identities=15%  Similarity=0.088  Sum_probs=235.8

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEc
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIP  103 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~  103 (387)
                      .++++.+.+++.+.+...  ..+....+..++|+.+++++      +++++++++|+|+++++..++.++.++||+|+++
T Consensus        10 ~~~~~~v~~a~~~~~~~~--~~~~~~~~~~~l~~~la~~~------g~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~   81 (352)
T 1iug_A           10 VRLHPKALEALARPQLHH--RTEAAREVFLKARGLLREAF------RTEGEVLILTGSGTLAMEALVKNLFAPGERVLVP   81 (352)
T ss_dssp             CCCCHHHHHHHHSCCCCT--TSHHHHHHHHHHHHHHHHHH------TCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CCCCHHHHHHhccCCCCc--cCHHHHHHHHHHHHHHHHHh------CCCCceEEEcCchHHHHHHHHHhccCCCCeEEEE
Confidence            478899999998876531  11111234578899999998      3456899999999999999999999999999999


Q ss_pred             CCCCcchH--HHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhc-
Q 038416          104 RPGYPLYE--IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNL-  180 (387)
Q Consensus       104 ~p~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~-  180 (387)
                      .|+|+++.  ..+.  ..|.+++.++++.  ++.+|++++++   +++++|++++|+||||.+++   +++|.++|+++ 
T Consensus        82 ~~~~~~~~~~~~~~--~~g~~~~~v~~~~--~~~~d~~~l~~---~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~  151 (352)
T 1iug_A           82 VYGKFSERFYEIAL--EAGLVVERLDYPY--GDTPRPEDVAK---EGYAGLLLVHSETSTGALAD---LPALARAFKEKN  151 (352)
T ss_dssp             ECSHHHHHHHHHHH--HTTCEEEEEECCT--TCCCCTTTSCC---SSCSEEEEESEETTTTEECC---HHHHHHHHHHHC
T ss_pred             eCCchhHHHHHHHH--HcCCceEEEeCCC--CCCCCHHHHhc---cCCcEEEEEEecCCcceecC---HHHHHHHHHhhC
Confidence            99999865  4445  6899999998753  34678888876   57899999999999999988   78899999999 


Q ss_pred             -CcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHH---------H
Q 038416          181 -GIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDS---------I  250 (387)
Q Consensus       181 -~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~---------~  250 (387)
                       |+++|+|++|+..    .....+..+   +..+++.|+||+++.+ .++||+++++        +.++.         +
T Consensus       152 ~~~~li~D~a~~~~----~~~~~~~~~---~~d~~~~s~~K~~~~~-~g~G~~~~~~--------~~~~~~~~~~~~~~~  215 (352)
T 1iug_A          152 PEGLVGADMVTSLL----VGEVALEAM---GVDAAASGSQKGLMCP-PGLGFVALSP--------RALERLKPRGYYLDL  215 (352)
T ss_dssp             TTCEEEEECTTTBT----TBCCCSGGG---TCSEEEEESSSTTCCC-SCEEEEEECH--------HHHHTCCCCSSTTCH
T ss_pred             CCCEEEEECCcccc----Ccceecccc---CeeEEEecCcccccCC-CceeEEEECH--------HHHHHhhCCCceeeH
Confidence             9999999999731    111122222   2347889999954322 3479999865        44433         1


Q ss_pred             H----hh--hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC-ceEEEEEecCcc
Q 038416          251 K----GC--LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ-GAMFVMVKLNVS  323 (387)
Q Consensus       251 ~----~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~g~~~~~~~~~~  323 (387)
                      .    ..  ....++++...+.++..+++...+. +++..++++++++++.+.|+++ ++.+. .+. .++++|+.++..
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~  292 (352)
T 1iug_A          216 ARELKAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEG-GLRPV-PKRFSPAVAAFYLPEG  292 (352)
T ss_dssp             HHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHT-TCEES-CSSBCTTCEEEECCTT
T ss_pred             HHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC-CCccc-ccccCCeEEEEEcCCC
Confidence            1    11  1234566777777777777653333 7788889999999999999988 77744 453 566788877531


Q ss_pred             cccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHhh
Q 038416          324 MLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       324 ~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~  384 (387)
                           .+..++...+. ++||.+.+|..+...+++||+++  .+++++++++++|+++++++.
T Consensus       293 -----~~~~~~~~~l~-~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  349 (352)
T 1iug_A          293 -----VPYARVKEAFA-QRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEIL  349 (352)
T ss_dssp             -----CCHHHHHHHHH-TTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred             -----CCHHHHHHHHH-HCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHhc
Confidence                 14566777765 55999999875545689999996  478999999999999988764

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=100.00  E-value=1.5e-32  Score=258.38  Aligned_cols=322  Identities=15%  Similarity=0.134  Sum_probs=233.8

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCCC----------CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSPT----------LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA   94 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~~----------~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~   94 (387)
                      ++++.+.+++.+.+.......++..          ....++++.+++++      ++++++|++|+|+++|+..++.++.
T Consensus        33 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~------~~~~~~v~~~~ggt~a~~~a~~~l~  106 (423)
T 3lvm_A           33 PVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLV------GADPREIVFTSGATESDNLAIKGAA  106 (423)
T ss_dssp             CCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHH------TCCGGGEEEESSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHc------CCCCCeEEEeCChHHHHHHHHHHHH
Confidence            6789999999988772111111111          13367788888887      4567899999999999999999887


Q ss_pred             C----CCCeEEEcCCCCcchHHHhh-ccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHH
Q 038416           95 R----PGANILIPRPGYPLYEIHAA-GSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQH  169 (387)
Q Consensus        95 ~----~g~~vl~~~p~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~  169 (387)
                      +    +||+|+++.|+|+++...+. ....|.++..+++++  ++.+|+++|+++++++++++++++|+||||.+++   
T Consensus       107 ~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---  181 (423)
T 3lvm_A          107 NFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR--NGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQD---  181 (423)
T ss_dssp             HHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT--TSCCCHHHHHHHCCTTEEEEECCSBCTTTCBBCC---
T ss_pred             HhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCC--CCccCHHHHHHhcCCCcEEEEEeCCCCCCccccC---
Confidence            4    79999999999998876663 005699999998754  5578999999999989999999999999999999   


Q ss_pred             HHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHH
Q 038416          170 LQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDS  249 (387)
Q Consensus       170 ~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~  249 (387)
                      +++|.++|+++|+++|+|++|+...    ....+..+   +..+++.|+||.++.+|  +|++++++.        ..+.
T Consensus       182 l~~i~~l~~~~~~~li~Dea~~~~~----~~~~~~~~---~~di~~~s~sK~~g~~g--~G~~~~~~~--------~~~~  244 (423)
T 3lvm_A          182 IAAIGEMCRARGIIYHVDATQSVGK----LPIDLSQL---KVDLMSFSGHKIYGPKG--IGALYVRRK--------PRVR  244 (423)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTTTTT----SCCCTTTS---CCSEEEEESTTTTSCSS--CEEEEECBT--------TBCC
T ss_pred             HHHHHHHHHHcCCEEEEEhhhhcCC----CCcChhhc---CCCEEEechHHhcCCCC--eEEEEEecc--------ccCC
Confidence            7889999999999999999987522    11122222   23488999999877666  899998752        2222


Q ss_pred             HHhhh--------hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCc---eEEEEE
Q 038416          250 IKGCL--------NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQG---AMFVMV  318 (387)
Q Consensus       250 ~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---g~~~~~  318 (387)
                      +....        ....+++...+.++..++... +..+++..++++++++.+.+.|+++|++.+. .+..   +.++++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~  322 (423)
T 3lvm_A          245 IEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIA-KEEMATEMERLRGLRNRLWNGIKDIEEVYLN-GDLEHGAPNILNV  322 (423)
T ss_dssp             CCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTSTTEEEE-SCSTTBCTTEEEE
T ss_pred             CCccccCCcccccccCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe-CCccccCCCeEEE
Confidence            22211        123455666776666666542 2347888899999999999999989888754 3332   234444


Q ss_pred             ecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC-------------------CCeEEEEee--CChHhHHHHHHHHH
Q 038416          319 KLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM-------------------KNWLRIAFA--AEPATLEDGLERIK  377 (387)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-------------------~~~~Ri~~~--~~~e~~~~~~~~l~  377 (387)
                      .++.      .+..++...+ .+  |.+.+|..|..                   .+++||+++  .++++++++++.|+
T Consensus       323 ~~~~------~~~~~l~~~l-~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~  393 (423)
T 3lvm_A          323 SFNY------VEGESLIMAL-KD--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVR  393 (423)
T ss_dssp             EETT------SCHHHHHHHT-TT--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             EeCC------CCHHHHHHHH-hh--heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHH
Confidence            4532      1455565555 44  88888876543                   378999996  47899999999999


Q ss_pred             HHHHHhhh
Q 038416          378 AFCQRHAK  385 (387)
Q Consensus       378 ~~~~~~~~  385 (387)
                      ++++++++
T Consensus       394 ~~~~~~~~  401 (423)
T 3lvm_A          394 KSIGRLRD  401 (423)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHhhc
Confidence            99988764

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=100.00  E-value=1.6e-32  Score=254.63  Aligned_cols=319  Identities=14%  Similarity=0.098  Sum_probs=238.5

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCC--CCEEEcCChHHHHHHHHHhhcCCCCeEE
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSP--EDVYLTLGCSQAIEISLSVLARPGANIL  101 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~--~~i~~~~g~~~a~~~~~~~l~~~g~~vl  101 (387)
                      .++++.+.+++.+.+... . .+.......++++.++++++      .++  +++++|+|+++++. ++..++++||+|+
T Consensus        11 ~~~~~~v~~a~~~~~~~~-~-~~~~~~~~~~~~~~la~~~~------~~~~~~~v~~~~g~t~al~-~~~~~~~~gd~vi   81 (384)
T 3zrp_A           11 TTIKEDVLVAGLENNVGF-T-SKEFVEALAYSLKGLRYVMG------ASKNYQPLIIPGGGTSAME-SVTSLLKPNDKIL   81 (384)
T ss_dssp             SCCCHHHHHHTTCCSCCT-T-SHHHHHHHHHHHHHHHHHHT------CCTTSEEEEEESCHHHHHH-HGGGGCCTTCEEE
T ss_pred             CCCCHHHHHHhhcccccc-c-cHHHHHHHHHHHHHHHHHhC------CCCCCcEEEEcCCcHHHHH-HHHhhcCCCCEEE
Confidence            478889988887765421 1 11112345677777887773      444  78999999999999 9999999999999


Q ss_pred             EcCCCCcc--hHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCccccCCHHHHHHHHHHHH
Q 038416          102 IPRPGYPL--YEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCGNVFSYQHLQKIARTAR  178 (387)
Q Consensus       102 ~~~p~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~  178 (387)
                      ++.|+|++  +...+.  ..|.+++.++++.  ++.+|++++++++++ ++++|++++|+||||..++   +++|.++|+
T Consensus        82 ~~~~~~~~~~~~~~~~--~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~  154 (384)
T 3zrp_A           82 VVSNGVFGDRWEQIFK--RYPVNVKVLRPSP--GDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREP---VKDVINKIR  154 (384)
T ss_dssp             EECSSHHHHHHHHHHT--TSSCEEEEECCST--TCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECC---HHHHHHHHG
T ss_pred             EecCCcchHHHHHHHH--HcCCcEEEecCCC--CCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECc---HHHHHHHHH
Confidence            99999975  556667  8899999998854  446899999999987 7999999999999999998   788999999


Q ss_pred             hcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHH--------
Q 038416          179 NLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSI--------  250 (387)
Q Consensus       179 ~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~--------  250 (387)
                      ++|+++|+|++++....    ...+...   +..+++.|+||+++. +.++|++++++        ++++.+        
T Consensus       155 ~~~~~li~D~a~~~~~~----~~~~~~~---~~d~~~~s~~K~~~~-~~g~g~~~~~~--------~~~~~~~~~~~~~~  218 (384)
T 3zrp_A          155 KYVELIVVDGVSSVGAE----EVKAEEW---NVDVYLTASQKALGS-AAGLGLLLLSP--------KALSILDSQNSIAG  218 (384)
T ss_dssp             GGEEEEEEECTTTTTTS----CCCTTTT---TCSEEEEETTSTTCC-CSSEEEEEECH--------HHHHHHHHCCCSCC
T ss_pred             hcCCEEEEECcccccCc----ccccccc---CCCEEEecCcccccC-CCceEEEEECH--------HHHHHhcCCCCCCc
Confidence            99999999999884221    1122222   234889999998642 24489999876        565555        


Q ss_pred             -----Hhhh----------hcc-CCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC---
Q 038416          251 -----KGCL----------NAA-SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ---  311 (387)
Q Consensus       251 -----~~~~----------~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---  311 (387)
                           ....          ... .+++...+.++..++....+..+++..++++++++++.+.|+++ ++.+. .+.   
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~  296 (384)
T 3zrp_A          219 YYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL-GLEIV-ARRPES  296 (384)
T ss_dssp             STTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBS-CSSGGG
T ss_pred             ccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCeEc-cCcccc
Confidence                 1111          111 25566667766666665444557888899999999999999998 77744 444   


Q ss_pred             -ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHhh
Q 038416          312 -GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       312 -~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~  384 (387)
                       .+.++++.++.      .+..++...+. ++||.+.+|..+.. +++||+++  .+++++++++++|+++++++.
T Consensus       297 ~~~~~~~~~~~~------~~~~~~~~~l~-~~gi~v~~g~~~~~-~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~  364 (384)
T 3zrp_A          297 YSNTVTGVILKV------ADPQKVLAGTV-NEGVEFAPGVHPAF-KYFRIGHMGWVTPNDAIIAISVIERTLRKLG  364 (384)
T ss_dssp             BCSSEEEEECSS------SCHHHHHHHHH-TTTCCCEECCCTTC-CEEEEECCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred             cCccEEEEECCC------CCHHHHHHHHH-HCCEEEecCCCCCc-CEEEEeccccCCHHHHHHHHHHHHHHHHHcC
Confidence             46677777764      14567777765 45999999874433 89999985  589999999999999998765

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=100.00  E-value=2.2e-32  Score=253.64  Aligned_cols=328  Identities=13%  Similarity=0.066  Sum_probs=238.7

Q ss_pred             CCcHHHHHHHHHHhcCCCC--C-CCCC----CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc---
Q 038416           25 SDSTVAEDAVVDALRTAHY--N-CYSP----TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA---   94 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~--~-~y~~----~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~---   94 (387)
                      ++++.+++++.+.+.....  . .|..    .....++|+.+++++      +++++++++|+|+++|+..++.++.   
T Consensus        11 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~------g~~~~~v~~~~g~t~a~~~~~~~l~~~~   84 (382)
T 4eb5_A           11 PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLV------NGGGGTVVFTSGATEANNLAIIGYAMRN   84 (382)
T ss_dssp             CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHH------TCTTEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHh------CCCCCeEEEcCchHHHHHHHHHHHHhhc
Confidence            6899999999998874211  1 1321    124577888888887      3466799999999999999999998   


Q ss_pred             -CCCCeEEEcCCCCcchHHHhh-ccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHH
Q 038416           95 -RPGANILIPRPGYPLYEIHAA-GSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQK  172 (387)
Q Consensus        95 -~~g~~vl~~~p~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~  172 (387)
                       ++||+|+++.|+|+++..... ....|.+++.++++.  ++.+|+++|++++++++++|++++|+||||..++   +++
T Consensus        85 ~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~  159 (382)
T 4eb5_A           85 ARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK--YGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQP---VEE  159 (382)
T ss_dssp             GGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCT--TSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCC---HHH
T ss_pred             cCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCC--CCccCHHHHHHHhcCCCeEEEEeccCCCccccCC---HHH
Confidence             899999999999998765553 014799999998853  4568999999999888999999999999999998   788


Q ss_pred             HHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHH-H
Q 038416          173 IARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSI-K  251 (387)
Q Consensus       173 l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~-~  251 (387)
                      |.++|+++|++ |+|++|+.    +.....+..+   +..+++.|+||.++++|  +|++++++...+.   ...... .
T Consensus       160 i~~l~~~~~~~-i~D~a~~~----g~~~~~~~~~---~~di~~~s~sK~~g~~g--~G~~~~~~~~~l~---~~~~~~~~  226 (382)
T 4eb5_A          160 ISEVLAGKAAL-HIDATASV----GQIEVDVEKI---GADMLTISSNDIYGPKG--VGALWIRKEAKLQ---PVILGGGQ  226 (382)
T ss_dssp             HHHHHTTSSEE-EEECTTTB----TTBCCCHHHH---TCSEEEEETGGGTCCSS--CEEEEEETTCCCC---CSSCSSCT
T ss_pred             HHHHHHHCCCE-EEEcchhc----CCcccCcccc---CCCEEEeehHHhcCCCc--eEEEEEccccccC---ceecCCCc
Confidence            99999999999 99999983    1111122222   23488999999977666  7999987631111   000000 0


Q ss_pred             hhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCc---eEEEEEecCcccccCC
Q 038416          252 GCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQG---AMFVMVKLNVSMLEDI  328 (387)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~  328 (387)
                      ......++++...+.++..+++... +++++..++++++++.+.+.|+++|++.+. .+.+   +.++++.++.      
T Consensus       227 ~~~~~~~~~~~~~~~~~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~------  298 (382)
T 4eb5_A          227 ENGLRSGSENVPSIVGFGKAAEITA-MEWREEAERLRRLRDRIIDNVLKIEESYLN-GHPEKRLPNNVNVRFSY------  298 (382)
T ss_dssp             GGGTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSTTEEEC-SCSSSBCTTEEEEEETT------
T ss_pred             cccccCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhCCCeEEe-CCcccCCCCEEEEEeCC------
Confidence            0111234556666666666666433 357888899999999999999988887744 4431   4466666652      


Q ss_pred             CcHHHHHHHHHHhcCeEEEcCCccCC-------------------CCeEEEEee--CChHhHHHHHHHHHHHHHHhhh
Q 038416          329 GDDLEFCLKLAKEESVIILPGRTVGM-------------------KNWLRIAFA--AEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       329 ~~~~~~~~~ll~~~gi~v~~g~~~~~-------------------~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      .+..++...+ .++||.+.+|..|..                   .+++||+++  .+++++++++++|+++++++++
T Consensus       299 ~~~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (382)
T 4eb5_A          299 IEGESIVLSL-DMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS  375 (382)
T ss_dssp             SCHHHHHHHH-HHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHH-HHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            1456677666 567999999875432                   478999997  5899999999999999988765

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=100.00  E-value=1.6e-32  Score=255.87  Aligned_cols=321  Identities=12%  Similarity=0.062  Sum_probs=242.4

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCC-C-CCcHHHHHHHHHHHhhcCCCCCCCC-CEEEcCChHHHHHHHHHhhcCCCCeE
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSP-T-LGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIEISLSVLARPGANI  100 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~-~-~~~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~g~~v  100 (387)
                      .++++.+.+++.+....    +|.+ . ....++|+.+++++      +.+++ +|++|+|+++++..++.+++++||+|
T Consensus        27 ~~~~~~v~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~------~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~v   96 (396)
T 2ch1_A           27 SNCSKRVLTAMTNTVLS----NFHAELFRTMDEVKDGLRYIF------QTENRATMCVSGSAHAGMEAMLSNLLEEGDRV   96 (396)
T ss_dssp             CCCCHHHHHHTTSCCCC----TTCHHHHHHHHHHHHHHHHHH------TCCCSCEEEESSCHHHHHHHHHHHHCCTTCEE
T ss_pred             CCCCHHHHHHhcccccc----CCChhHHHHHHHHHHHHHHHh------CCCCCcEEEECCcHHHHHHHHHHHhcCCCCeE
Confidence            45778888877665432    3433 1 23688999999998      34666 79999999999999999999999999


Q ss_pred             EEcCCCCcchH--HHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCccccCCHHHHHHHHHHH
Q 038416          101 LIPRPGYPLYE--IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCGNVFSYQHLQKIARTA  177 (387)
Q Consensus       101 l~~~p~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~~~~l~~~~  177 (387)
                      +++.|+|+++.  ..++  ..|.+++.++++.  ++.+|++++++++++ ++++|++++|+||||..++   +++|.++|
T Consensus        97 l~~~~~~~~~~~~~~~~--~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~---~~~i~~l~  169 (396)
T 2ch1_A           97 LIAVNGIWAERAVEMSE--RYGADVRTIEGPP--DRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQP---LEGVGQIC  169 (396)
T ss_dssp             EEEESSHHHHHHHHHHH--HTTCEEEEEECCT--TSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHH
T ss_pred             EEEcCCcccHHHHHHHH--HcCCceEEecCCC--CCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecC---HHHHHHHH
Confidence            99999999874  4667  7899999998753  557899999999987 8999999999999999998   78899999


Q ss_pred             HhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhh----
Q 038416          178 RNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGC----  253 (387)
Q Consensus       178 ~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~----  253 (387)
                      +++|+++|+|++|+..   . ....+..+.   ..+++.|++|+++. +.++|++++++        +.++.+...    
T Consensus       170 ~~~~~~li~Dea~~~g---~-~~~~~~~~~---~d~~~~s~~K~~~~-~~g~g~~~~~~--------~~~~~~~~~~~~~  233 (396)
T 2ch1_A          170 HQHDCLLIVDAVASLC---G-VPFYMDKWE---IDAVYTGAQKVLGA-PPGITPISISP--------KALDVIRNRRTKS  233 (396)
T ss_dssp             HHTTCEEEEECTTTBT---T-BCCCTTTTT---CCEEECCCC-CCCC-CSSCEEEEECH--------HHHHHHHTCSSCC
T ss_pred             HHcCCEEEEEcccccc---C-CccchhhcC---cCEEEEcCCccccC-CCCeEEEEECH--------HHHHhhhhccCcc
Confidence            9999999999999831   1 112222222   23667899997542 24469999875        555555321    


Q ss_pred             --------------------hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCc-
Q 038416          254 --------------------LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQG-  312 (387)
Q Consensus       254 --------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-  312 (387)
                                          ....++++...+.++..+++...+.++++..++++++++++.+.|+++ ++.+. .+.+ 
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~  311 (396)
T 2ch1_A          234 KVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM-GLDIF-VKDPR  311 (396)
T ss_dssp             SCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBS-SCSGG
T ss_pred             cceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCeec-cCCcc
Confidence                                112235667778877777776444567888899999999999999988 77744 4443 


Q ss_pred             ---eEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe-e--CChHhHHHHHHHHHHHHHHhh
Q 038416          313 ---AMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF-A--AEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       313 ---g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~-~--~~~e~~~~~~~~l~~~~~~~~  384 (387)
                         +.++++.++..     .+..++...|++++||.+.+|..+..++++||++ +  .+++++++++++|+++++++.
T Consensus       312 ~~~~~~~~~~~~~~-----~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~  384 (396)
T 2ch1_A          312 HRLPTVTGIMIPKG-----VDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH  384 (396)
T ss_dssp             GBCTTEEEEECCTT-----CCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred             ccCCceEEEEcCCC-----CCHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhC
Confidence               23677777521     2466777777666799999987666678999999 4  378999999999999998765

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=6.7e-32  Score=251.46  Aligned_cols=323  Identities=15%  Similarity=0.052  Sum_probs=235.4

Q ss_pred             CCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCC------
Q 038416           23 LLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARP------   96 (387)
Q Consensus        23 ~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~------   96 (387)
                      ..++++.+.+++.+.+.... .++....+..++++.+++++.+.++  .++++|++|+|+++++..++.++..+      
T Consensus        39 ~~~~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~  115 (397)
T 3f9t_A           39 CSNVLPITRKIVDIFLETNL-GDPGLFKGTKLLEEKAVALLGSLLN--NKDAYGHIVSGGTEANLMALRCIKNIWREKRR  115 (397)
T ss_dssp             CCCCCTHHHHHHHHHTTCCT-TSGGGBHHHHHHHHHHHHHHHHHTT--CTTCEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHhhcC-CCcccChhHHHHHHHHHHHHHHHhC--CCCCCEEEecCcHHHHHHHHHHHHHHHHhhhh
Confidence            44677899999999887531 1222212345666666666665554  46789999999999999999998765      


Q ss_pred             -------CCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCccccCCHH
Q 038416           97 -------GANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        97 -------g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~  168 (387)
                             ||+|+++.|+|+++...++  ..|.+++.++++.  ++.+|+++|++++++ +++++++++|+||||.+.+  
T Consensus       116 ~~~~~~~gd~vl~~~~~~~~~~~~~~--~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~--  189 (397)
T 3f9t_A          116 KGLSKNEHPKIIVPITAHFSFEKGRE--MMDLEYIYAPIKE--DYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDN--  189 (397)
T ss_dssp             TTCCCCSSCEEEEETTCCTHHHHHHH--HHTCEEEEECBCT--TSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCC--
T ss_pred             hcccCCCCeEEEECCcchhHHHHHHH--HcCceeEEEeeCC--CCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCC--
Confidence                   8999999999999999999  8999999998853  467899999999988 8999999999999999977  


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCC-------ccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcc
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPY-------VPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGIL  241 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~-------~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~  241 (387)
                       +++|.++|++||+++|+|++|+.+.+.....       .....+.. +..+++.|++|+ +.+|.++|+++++++    
T Consensus       190 -l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~-~~~~~~~g~~~~~~~----  262 (397)
T 3f9t_A          190 -IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKM-GHCPIPSGGILFKDI----  262 (397)
T ss_dssp             -HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTT-TCCCSSCEEEEESSG----
T ss_pred             -HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccc-cCCCCCceEEEEeCH----
Confidence             8889999999999999999999755422110       00011111 334788999998 567789999998752    


Q ss_pred             cchhHHHHHHhhhhcc---------CC---cchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 038416          242 QNSGFVDSIKGCLNAA---------SH---PVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVK  309 (387)
Q Consensus       242 ~~~~~~~~~~~~~~~~---------~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  309 (387)
                         .+.+.+.......         .+   .+...+.++...+   ....+.+..+++.++++++.+.|+++ ++..+ .
T Consensus       263 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~  334 (397)
T 3f9t_A          263 ---GYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYL---GREGQRKIVNECMENTLYLYKKLKEN-NFKPV-I  334 (397)
T ss_dssp             ---GGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBS-S
T ss_pred             ---HHHHhhccCCccccCCCccccccccccchHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEE-c
Confidence               2333332111100         11   2334444444444   34667888888899999999999998 77755 4


Q ss_pred             CCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHH
Q 038416          310 PQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       310 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~  381 (387)
                      +..+.++++.++        +..++...+ .++||.+.++..   ++++||+++  .+++++++++++|+++++
T Consensus       335 ~~~~~~~~~~~~--------~~~~~~~~l-~~~gi~v~~~~~---~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~  396 (397)
T 3f9t_A          335 EPILNIVAIEDE--------DYKEVCKKL-RDRGIYVSVCNC---VKALRIVVMPHIKREHIDNFIEILNSIKR  396 (397)
T ss_dssp             CCSSSEEEEECT--------THHHHHHHH-HHTTCBCEECSS---SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred             CCCccEEEEEeC--------CHHHHHHHH-HhCCeEEeccCC---CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence            445566677665        245666666 455999999763   589999996  589999999999988764

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=100.00  E-value=3.3e-32  Score=254.92  Aligned_cols=321  Identities=12%  Similarity=-0.009  Sum_probs=240.1

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCC--CCCcHHHHHHHHHHHhhcCCCCCCCCC-EEEcCChHHHHHHHHHhhcCCCCeE
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSP--TLGVPSARRGIADYLNRDLPYKLSPED-VYLTLGCSQAIEISLSVLARPGANI  100 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~--~~~~~~lr~~ia~~~~~~~~~~~~~~~-i~~~~g~~~a~~~~~~~l~~~g~~v  100 (387)
                      .++++.+.+++.+...    .+|.+  .....++++.++++++      .+.++ +++++|+++++..++.+++++||+|
T Consensus        22 ~~~~~~v~~a~~~~~~----~~~~~~~~~~~~~~~~~la~~~~------~~~~~~v~~~~sgt~al~~~~~~~~~~gd~V   91 (411)
T 3nnk_A           22 INADPRVLRAMSSQLI----GQYDPAMTHYMNEVMALYRGVFR------TENRWTMLVDGTSRAGIEAILVSAIRPGDKV   91 (411)
T ss_dssp             CCCCHHHHHHHTSCCC----CTTCHHHHHHHHHHHHHHHHHHT------CCCSEEEEEESCHHHHHHHHHHHHCCTTCEE
T ss_pred             CCCCHHHHHHhhcccc----ccccHHHHHHHHHHHHHHHHHhC------CCCCcEEEECCCcHHHHHHHHHHhcCCCCEE
Confidence            4678888888776432    23322  1223566677777663      34444 7889999999999999999999999


Q ss_pred             EEcCCCCcc--hHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCccccCCHHHHHHHHHHH
Q 038416          101 LIPRPGYPL--YEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCGNVFSYQHLQKIARTA  177 (387)
Q Consensus       101 l~~~p~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~~~~l~~~~  177 (387)
                      +++.|+|++  +...+.  ..|.+++.++++  .++.+|+++|++++++ ++++|++++|+||||.+++   +++|.++|
T Consensus        92 l~~~~~~~~~~~~~~~~--~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~  164 (411)
T 3nnk_A           92 LVPVFGRFGHLLCEIAR--RCRAEVHTIEVP--WGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQP---LAELGEIC  164 (411)
T ss_dssp             EEEECSHHHHHHHHHHH--HTTCEEEEEECC--TTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHH
T ss_pred             EEecCCchHHHHHHHHH--HcCCeEEEEecC--CCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceecc---HHHHHHHH
Confidence            999999987  888888  899999999874  3457899999999986 8999999999999999988   78899999


Q ss_pred             HhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhh---
Q 038416          178 RNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL---  254 (387)
Q Consensus       178 ~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~---  254 (387)
                      +++|+++|+|++++...    ....+...   +..+++.|++|+++ ++.++|++++++        ++++.+....   
T Consensus       165 ~~~~~~li~Dea~~~~~----~~~~~~~~---~~d~~~~s~~K~l~-~~~g~g~~~~~~--------~~~~~~~~~~~~~  228 (411)
T 3nnk_A          165 RRYDALFYTDATASLGG----NPLETDVW---GLDAVSAGMQKCLG-GPSGTSPITLSA--------RMEEAIRRRKCVE  228 (411)
T ss_dssp             HHHTCEEEEECTTTBTT----BCCCTTTT---TCSEEECCSTTTTC-CCSSEEEEEECH--------HHHHHHHTTCCCC
T ss_pred             HHcCCEEEEECCcccCC----cccchhcc---CCcEEEecCccccC-CCCceEEEEECH--------HHHHHHhhccccc
Confidence            99999999999987422    11112222   23488999999742 234589999876        6776665432   


Q ss_pred             ----------------------------------hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc
Q 038416          255 ----------------------------------NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE  300 (387)
Q Consensus       255 ----------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  300 (387)
                                                        ...++++...+.++..+++...+..+++..+++.++++++.+.|++
T Consensus       229 ~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~  308 (411)
T 3nnk_A          229 EGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQA  308 (411)
T ss_dssp             GGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence                                              1224556667777767666544444788889999999999999998


Q ss_pred             CCCCCCCCCCCc---eEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe-e--CChHhHHHHHH
Q 038416          301 IPCITCPVKPQG---AMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF-A--AEPATLEDGLE  374 (387)
Q Consensus       301 ~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~-~--~~~e~~~~~~~  374 (387)
                      + ++.+. .+.+   +.++++.++..     .+..++...+++++||.+.+|.....++++||++ +  .++++++++++
T Consensus       309 ~-g~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~  381 (411)
T 3nnk_A          309 M-GLETF-GDLKHKMNNVLGVVIPQG-----INGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLS  381 (411)
T ss_dssp             T-TCCBC-SCGGGBCSSEEEEECCTT-----CCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHH
T ss_pred             c-CCEeC-CCcccccccEEEEECCCC-----CCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHH
Confidence            7 77744 3432   56777777531     2456777777777799999986555578999998 4  37899999999


Q ss_pred             HHHHHHHHhh
Q 038416          375 RIKAFCQRHA  384 (387)
Q Consensus       375 ~l~~~~~~~~  384 (387)
                      +|+++++++.
T Consensus       382 ~l~~~l~~~~  391 (411)
T 3nnk_A          382 ALEAVLNYLK  391 (411)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHcC
Confidence            9999998754

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=100.00  E-value=2.4e-32  Score=255.18  Aligned_cols=330  Identities=13%  Similarity=0.065  Sum_probs=244.9

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcC-CCC---CCCC--CCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCCh
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRT-AHY---NCYS--PTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGC   82 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~-~~~---~~y~--~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~   82 (387)
                      .+++.+.+++   ..+..++.+.+++.+.+.. ...   ..|+  ...+..++|+.+++++      +.+ +.+ +++++
T Consensus        46 ~~id~~~~~~---~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~------g~~-~~i-~~~sG  114 (401)
T 1fc4_A           46 HVINFCANNY---LGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL------GME-DAI-LYSSC  114 (401)
T ss_dssp             EEEECCCSCT---TSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH------TCS-EEE-EESCH
T ss_pred             cEEEeeccCc---ccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHh------CCC-cEE-EeCCh
Confidence            4555655543   1123589999999998864 211   0121  1345788999999998      333 445 44556


Q ss_pred             HHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc------CceEEEEeC
Q 038416           83 SQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE------NTVAIVIIN  156 (387)
Q Consensus        83 ~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~  156 (387)
                      ++++..++++++++||.|+++.|+|.++...++  ..|.+++.++.       .|++++++++++      ++++|++++
T Consensus       115 s~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~--~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~~~~  185 (401)
T 1fc4_A          115 FDANGGLFETLLGAEDAIISDALNHASIIDGVR--LCKAKRYRYAN-------NDMQELEARLKEAREAGARHVLIATDG  185 (401)
T ss_dssp             HHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHH--TSCSEEEEECT-------TCHHHHHHHHHHHHHTTCSSEEEEEES
T ss_pred             HHHHHHHHHHHcCCCCEEEEcchhHHHHHHHHH--HcCCceEEECC-------CCHHHHHHHHHHhhccCCCceEEEEeC
Confidence            779999999999999999999999988888888  89999888763       378888888765      688999999


Q ss_pred             CCCCccccCCHHHHHHHHHHHHhcCcEEeeccccc-cccc-CCCCCccccccCCCccEEEEecCcccc-cccccceEEEE
Q 038416          157 PGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYN-HLAF-GSTPYVPMGVFGSIVPVITLGSISKRW-IVPGWRLGWLV  233 (387)
Q Consensus       157 p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~-~~~~-~~~~~~~~~~~~~~~~~~~i~s~sK~~-~~~g~r~G~i~  233 (387)
                      |+||||.+++   +++|.++|+++|+++|+|++|+ ++.. .+........+.. +..++++|+||++ +++|   ||++
T Consensus       186 ~~nptG~~~~---~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~-~~di~~~s~sK~~~~~~g---G~~~  258 (401)
T 1fc4_A          186 VFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMG-RVDIITGTLGKALGGASG---GYTA  258 (401)
T ss_dssp             EETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTT-CCSEEEEESSSTTCSSSC---EEEE
T ss_pred             CcCCCCCCCC---HHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCc-CCcEEEecchhhccCCCC---EEEE
Confidence            9999999998   8999999999999999999996 6653 3333222222222 3458899999998 5554   9999


Q ss_pred             eeCCCCcccchhHHHHHHhhh---hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 038416          234 TSDPNGILQNSGFVDSIKGCL---NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKP  310 (387)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  310 (387)
                      +++        ++++.+....   ..+.+++++.+.++...++...+  .++..++++++++++.+.|+++ ++.+.  +
T Consensus       259 ~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~  325 (401)
T 1fc4_A          259 ARK--------EVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEA--GSELRDRLWANARQFREQMSAA-GFTLA--G  325 (401)
T ss_dssp             ECH--------HHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHT-TCCBC--C
T ss_pred             cCH--------HHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc-CCccc--C
Confidence            865        6777776543   13557788888888887765221  3567788889999999999988 77733  6


Q ss_pred             CceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC---CCeEEEEee--CChHhHHHHHHHHHHHHHHhh
Q 038416          311 QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM---KNWLRIAFA--AEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       311 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      ..++++|+.++..     .+..++...+ .++||.+.+|..|+.   .+++||+++  .+++++++++++|+++++++.
T Consensus       326 ~~~~~~~~~~~~~-----~~~~~l~~~l-~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  398 (401)
T 1fc4_A          326 ADHAIIPVMLGDA-----VVAQKFAREL-QKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLG  398 (401)
T ss_dssp             SSSSEEEEEEECH-----HHHHHHHHHH-HHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEEcCCh-----HHHHHHHHHH-HHCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence            6788888887531     1345666666 455999999877654   358999996  689999999999999988764

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=100.00  E-value=1.7e-31  Score=247.34  Aligned_cols=328  Identities=13%  Similarity=0.075  Sum_probs=233.0

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCCC---------CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSPT---------LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA   94 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~~---------~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~   94 (387)
                      .++++.+.+++.+.+...  ..++..         ....++++.+++++      +++++++++|+|+++++..++.++.
T Consensus        10 ~~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~------~~~~~~i~~~~g~~~a~~~~~~~~~   81 (382)
T 4hvk_A           10 KPVDERILEAMLPYMTES--FGNPSSVHSYGFKAREAVQEAREKVAKLV------NGGGGTVVFTSGATEANNLAIIGYA   81 (382)
T ss_dssp             CCCCHHHHHHHHHHHHTS--CCCTTCSSHHHHHHHHHHHHHHHHHHHHT------TCTTEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhh--cCCCcccchHHHHHHHHHHHHHHHHHHHc------CCCcCeEEEECCchHHHHHHHHHhh
Confidence            467899999999988752  122211         11236666666666      3567889999999999999999987


Q ss_pred             ----CCCCeEEEcCCCCcchHHHhh-ccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHH
Q 038416           95 ----RPGANILIPRPGYPLYEIHAA-GSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQH  169 (387)
Q Consensus        95 ----~~g~~vl~~~p~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~  169 (387)
                          ++||+|+++.++|+++..... ....|.++..++++  .++.+|+++|+++++++++++++++|+||||.+++   
T Consensus        82 ~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---  156 (382)
T 4hvk_A           82 MRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVG--KYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQP---  156 (382)
T ss_dssp             HHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBC--TTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCC---
T ss_pred             hhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccC--CCCCcCHHHHHHHhccCceEEEEECCCCCceeeCC---
Confidence                899999999999998766544 00369999999885  34578999999999989999999999999999988   


Q ss_pred             HHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHH
Q 038416          170 LQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDS  249 (387)
Q Consensus       170 ~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~  249 (387)
                      +++|.++|+++|+ +|+|++|+...    ....+....   ..+++.|+||.++++|  +|++++++.....  +.+...
T Consensus       157 ~~~i~~l~~~~~~-li~D~a~~~~~----~~~~~~~~~---~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~--~~~~~~  224 (382)
T 4hvk_A          157 VEEISEVLAGKAA-LHIDATASVGQ----IEVDVEKIG---ADMLTISSNDIYGPKG--VGALWIRKEAKLQ--PVILGG  224 (382)
T ss_dssp             HHHHHHHHSSSSE-EEEECTTTBTT----BCCCHHHHT---CSEEEEESGGGTSCTT--CEEEEEETTCCCC--CSSCSS
T ss_pred             HHHHHHHHHHcCE-EEEEhHHhcCC----CCCCchhcC---CCEEEEeHHHhcCCCc--eEEEEEcCccCcC--cccccC
Confidence            7788999999999 99999987421    111222222   3488999999876666  7888877532111  000000


Q ss_pred             HHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCc---eEEEEEecCccccc
Q 038416          250 IKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQG---AMFVMVKLNVSMLE  326 (387)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---g~~~~~~~~~~~~~  326 (387)
                      .........+++...+.++..++.. .+.++++..++++++++.+.+.|+++|++.+. .+..   +.++++.++.    
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~----  298 (382)
T 4hvk_A          225 GQENGLRSGSENVPSIVGFGKAAEI-TAMEWREEAERLRRLRDRIIDNVLKIEESYLN-GHPEKRLPNNVNVRFSY----  298 (382)
T ss_dssp             CTGGGTSCSCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEC-SCSSSBCTTEEEEEETT----
T ss_pred             CCcCccccCCcCHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEe-CCccccCCCEEEEEECC----
Confidence            0001112345566677777666653 34577888999999999999999998888744 3332   2355555542    


Q ss_pred             CCCcHHHHHHHHHHhcCeEEEcCCccCC-------------------CCeEEEEee--CChHhHHHHHHHHHHHHHHhhh
Q 038416          327 DIGDDLEFCLKLAKEESVIILPGRTVGM-------------------KNWLRIAFA--AEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       327 ~~~~~~~~~~~ll~~~gi~v~~g~~~~~-------------------~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                        .+..++...+ .++||.+.+|..|..                   .+++|++++  .++++++++++.|+++++++++
T Consensus       299 --~~~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~~  375 (382)
T 4hvk_A          299 --IEGESIVLSL-DMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS  375 (382)
T ss_dssp             --CCHHHHHHHH-HHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CCHHHHHHHH-HHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence              1455666655 667999999876543                   478999996  4789999999999999988765

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=100.00  E-value=1.1e-32  Score=252.61  Aligned_cols=318  Identities=15%  Similarity=0.062  Sum_probs=235.9

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCC-CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEE
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSP-TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILI  102 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~-~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~  102 (387)
                      .++|+.+.+++.+.+..   ..|+. ..+..++|+.++++++    .+.+++++++|+|+++++..++.++.+  |+|++
T Consensus         9 ~~~~~~v~~a~~~~~~~---~~~~~~~~~~~~l~~~la~~~g----~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl~   79 (353)
T 2yrr_A            9 TPIPERVQKALLRPMRG---HLDPEVLRVNRAIQERLAALFD----PGEGALVAALAGSGSLGMEAGLANLDR--GPVLV   79 (353)
T ss_dssp             CCCCHHHHGGGGSCCCC---TTCHHHHHHHHHHHHHHHHHHC----CCTTCEEEEESSCHHHHHHHHHHTCSC--CCEEE
T ss_pred             CCCCHHHHHHHhccccc---ccCHHHHHHHHHHHHHHHHHhC----CCCCCceEEEcCCcHHHHHHHHHHhcC--CcEEE
Confidence            47889999988877653   12221 2346788888888873    122467899999999999999999876  89999


Q ss_pred             cCCCCcch--HHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCccccCCHHHHHHHHHHHHh
Q 038416          103 PRPGYPLY--EIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCGNVFSYQHLQKIARTARN  179 (387)
Q Consensus       103 ~~p~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~  179 (387)
                      +.++|+++  ...++  ..|.+++.++++.  ++.+|++++++++++ ++++|++++|+||||..++   +++|.++|++
T Consensus        80 ~~~~~~~~~~~~~~~--~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~  152 (353)
T 2yrr_A           80 LVNGAFSQRVAEMAA--LHGLDPEVLDFPP--GEPVDPEAVARALKRRRYRMVALVHGETSTGVLNP---AEAIGALAKE  152 (353)
T ss_dssp             EECSHHHHHHHHHHH--HTTCCEEEEECCT--TSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC---HHHHHHHHHH
T ss_pred             EcCCCchHHHHHHHH--HcCCceEEEeCCC--CCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecC---HHHHHHHHHH
Confidence            99999874  45556  7899999998853  456899999999987 8899999999999999998   7788999999


Q ss_pred             cCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccc-cccccceEEEEeeCCCCcccchhHHHHHH-------
Q 038416          180 LGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRW-IVPGWRLGWLVTSDPNGILQNSGFVDSIK-------  251 (387)
Q Consensus       180 ~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~-~~~g~r~G~i~~~~~~~~~~~~~~~~~~~-------  251 (387)
                      +|+++|+|++|+..   . ...++..++.   .+++.|++|++ +++|  +||+++++        ++++.++       
T Consensus       153 ~~~~li~D~a~~~~---~-~~~~~~~~~~---d~~~~s~~K~~~~~~g--~G~~~~~~--------~~~~~l~~~~~~~~  215 (353)
T 2yrr_A          153 AGALFFLDAVTTLG---M-LPFSMRAMGV---DYAFTGSQKCLSAPPG--LAPIAASL--------EARKAFTGKRGWYL  215 (353)
T ss_dssp             HTCEEEEECTTTTT---T-SCCCHHHHTC---SEEECCTTSTTCCCSS--CEEEEECH--------HHHHHCCCCSCSTT
T ss_pred             cCCeEEEEcCcccc---c-ccccccccCc---eEEEecCcccccCCCc--eEEEEECH--------HHHHHhccCCCccc
Confidence            99999999999632   1 1222333322   37888999964 4455  79999976        5555443       


Q ss_pred             ------h---hhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC--ceEEEEEec
Q 038416          252 ------G---CLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ--GAMFVMVKL  320 (387)
Q Consensus       252 ------~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~g~~~~~~~  320 (387)
                            .   .....++++...+.++..+++...+..+++..++++++++++.+.|+++ ++.+. .+.  .++++++.+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~  293 (353)
T 2yrr_A          216 DLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-GFRPY-PKASPLPTVLVVRP  293 (353)
T ss_dssp             CHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEES-CSSSBCTTEEEEEC
T ss_pred             cHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCccc-cCccCCCeEEEEEC
Confidence                  0   1122345666777777677765434447788899999999999999988 77744 343  455667777


Q ss_pred             CcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHH-HHHHHHHHHHHH
Q 038416          321 NVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLE-DGLERIKAFCQR  382 (387)
Q Consensus       321 ~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~-~~~~~l~~~~~~  382 (387)
                      +..     .+..++...+. ++||.+.+|..|..++++|++++  .++++++ +++++|+++++.
T Consensus       294 ~~~-----~~~~~~~~~l~-~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~  352 (353)
T 2yrr_A          294 PEG-----VDADRLVRALY-AEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL  352 (353)
T ss_dssp             CTT-----CCHHHHHHHHH-HTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred             CCC-----CCHHHHHHHHH-HCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence            521     14566777665 45999999987777789999993  5788888 999999988764

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=100.00  E-value=2.8e-32  Score=253.75  Aligned_cols=322  Identities=13%  Similarity=0.036  Sum_probs=240.3

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCC--CCCcHHHHHHHHHHHhhcCCCCCCC-CCEEEcCChHHHHHHHHHhhcCCCCeE
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSP--TLGVPSARRGIADYLNRDLPYKLSP-EDVYLTLGCSQAIEISLSVLARPGANI  100 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~--~~~~~~lr~~ia~~~~~~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~g~~v  100 (387)
                      .++++.+.+++.+....    ++.+  .....++++.+++++.      .+. ++|++|+|+++++..++.++.++||+|
T Consensus        32 ~~~~~~v~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~~------~~~~~~v~~~~gg~~al~~~~~~~~~~gd~v  101 (393)
T 3kgw_A           32 SNLAPRVLAAGSLRMIG----HMQKEMLQIMEEIKQGIQYVFQ------TRNPLTLVVSGSGHCAMETALFNLLEPGDSF  101 (393)
T ss_dssp             CCCCHHHHHHTTCCCCC----TTSHHHHHHHHHHHHHHHHHHT------CCCSEEEEESCCTTTHHHHHHHHHCCTTCEE
T ss_pred             CCCCHHHHHHhcccccC----cccHHHHHHHHHHHHHHHHHhC------CCCCcEEEEeCCcHHHHHHHHHhcCCCCCEE
Confidence            46788888877664321    2222  1234566777777763      333 359999999999999999999999999


Q ss_pred             EEcCCCCcc--hHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCccccCCHHHHHHHHHHH
Q 038416          101 LIPRPGYPL--YEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCGNVFSYQHLQKIARTA  177 (387)
Q Consensus       101 l~~~p~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~~~~l~~~~  177 (387)
                      +++.++|++  +...+.  ..|.++..++++.  ++.+|+++|++++++ ++++|++++|+||||..++   +++|.++|
T Consensus       102 l~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~  174 (393)
T 3kgw_A          102 LTGTNGIWGMRAAEIAD--RIGARVHQMIKKP--GEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQP---LDGFGELC  174 (393)
T ss_dssp             EEEESSHHHHHHHHHHH--HTTCEEEEEECCT--TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHH
T ss_pred             EEEeCCchhHHHHHHHH--HcCCceEEEeCCC--CCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhcc---HHHHHHHH
Confidence            999988863  356677  7899999998753  346899999999987 8999999999999999988   78899999


Q ss_pred             HhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccc-cccccceEEEEeeCCCCcccchhHHHHHHhhhh-
Q 038416          178 RNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRW-IVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLN-  255 (387)
Q Consensus       178 ~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~-~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-  255 (387)
                      ++||+++|+|++|+...    ....+...   +..+++.|+||++ +.+|  +|++++++        ++++.+..... 
T Consensus       175 ~~~~~~li~De~~~~g~----~~~~~~~~---~~d~~~~s~sK~~~~~~g--~g~~~~~~--------~~~~~~~~~~~~  237 (393)
T 3kgw_A          175 HRYQCLLLVDSVASLGG----VPIYMDQQ---GIDIMYSSSQKVLNAPPG--ISLISFND--------KAKYKVYSRKTK  237 (393)
T ss_dssp             HHTTCEEEEECTTTTTT----SCCCTTTT---TCCEEEEESSSTTCCCSS--CEEEEECH--------HHHHHHHTCSSC
T ss_pred             HHcCCEEEEECCccccC----cccchhhc---CCCEEEecCcccccCCCc--eeEEEECH--------HHHHHHhccCCC
Confidence            99999999999987321    11111112   2347888999976 3444  89999876        67777654221 


Q ss_pred             -----------------------ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC-
Q 038416          256 -----------------------AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ-  311 (387)
Q Consensus       256 -----------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-  311 (387)
                                             ..++++...+.++..++....+.++++..+++.++++.+.+.|+++ ++.+. .+. 
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~  315 (393)
T 3kgw_A          238 PVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM-GLKFF-VKDP  315 (393)
T ss_dssp             CSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBS-SSSG
T ss_pred             CCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeec-cCCh
Confidence                                   1235566777777777765445567888999999999999999988 77743 232 


Q ss_pred             ---ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe-e--CChHhHHHHHHHHHHHHHHhhh
Q 038416          312 ---GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF-A--AEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       312 ---~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~-~--~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                         .+.++++.++..     .+..++...+++++||.+.+|..+..++++||++ +  .+++++++++++|+++++++.+
T Consensus       316 ~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~  390 (393)
T 3kgw_A          316 EIRLPTITTVTVPAG-----YNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHCPK  390 (393)
T ss_dssp             GGBCSSEEEEECCTT-----BCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSCB
T ss_pred             hhcCCeEEEEeCCCC-----CCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhhh
Confidence               245666776531     2456777777666699999998776788999998 5  3899999999999999988765


Q ss_pred             c
Q 038416          386 K  386 (387)
Q Consensus       386 ~  386 (387)
                      +
T Consensus       391 ~  391 (393)
T 3kgw_A          391 N  391 (393)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=100.00  E-value=1e-31  Score=252.05  Aligned_cols=321  Identities=13%  Similarity=0.042  Sum_probs=234.1

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCC--CCCcHHHHHHHHHHHhhcCCCCCCCCCEE-EcCChHHHHHHHHHhhcCCCCeE
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSP--TLGVPSARRGIADYLNRDLPYKLSPEDVY-LTLGCSQAIEISLSVLARPGANI  100 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~--~~~~~~lr~~ia~~~~~~~~~~~~~~~i~-~~~g~~~a~~~~~~~l~~~g~~v  100 (387)
                      .+.++.+.+++.+    .....|+.  .....++++.+++++      +.+++.++ +++|+++++..++.+++++||+|
T Consensus        20 ~~~~~~v~~a~~~----~~~~~~~~~~~~~~~~l~~~la~~~------g~~~~~~~~~~~s~t~al~~~~~~l~~~gd~V   89 (416)
T 3isl_A           20 VEVDPRVLRVMST----PVVGQFDPAFTGIMNETMEMLRELF------QTKNRWAYPIDGTSRAGIEAVLASVIEPEDDV   89 (416)
T ss_dssp             CCCCHHHHHHTTS----CCCCTTSHHHHHHHHHHHHHHHHHT------TCCCSEEEEEESCHHHHHHHHHHHHCCTTCEE
T ss_pred             cCcCHHHHHHhcc----cCCCCccHHHHHHHHHHHHHHHHHh------CCCCCcEEEecCcHHHHHHHHHHHhcCCCCEE
Confidence            3566666665544    22223332  122455666666666      34556565 88999999999999999999999


Q ss_pred             EEcCCCCcc--hHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc-cCceEEEEeCCCCCccccCCHHHHHHHHHHH
Q 038416          101 LIPRPGYPL--YEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD-ENTVAIVIINPGNPCGNVFSYQHLQKIARTA  177 (387)
Q Consensus       101 l~~~p~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~  177 (387)
                      +++.|+|++  +...++  ..|.+++.++++.  ++.+|+++++++++ +++++|++++|+||||..++   +++|.++|
T Consensus        90 l~~~~~~~~~~~~~~~~--~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~  162 (416)
T 3isl_A           90 LIPIYGRFGYLLTEIAE--RYGANVHMLECEW--GTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHP---LKAIGEAC  162 (416)
T ss_dssp             EEEESSHHHHHHHHHHH--HTTCEEEEEECCT--TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CHHHHHHH
T ss_pred             EEecCCcccHHHHHHHH--hcCCeeEEEecCC--CCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecC---HHHHHHHH
Confidence            999999987  777788  8999999999853  34689999999997 68999999999999999988   88899999


Q ss_pred             HhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhh---
Q 038416          178 RNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL---  254 (387)
Q Consensus       178 ~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~---  254 (387)
                      +++|+++|+|++++....    ...+...   +..+++.|++|++ .++.++|++++++        ++++.+....   
T Consensus       163 ~~~~~~li~D~a~~~~~~----~~~~~~~---~~d~~~~s~~K~l-~g~~g~g~~~~~~--------~~~~~~~~~~~~~  226 (416)
T 3isl_A          163 RTEDALFIVDAVATIGGC----EVKVDEW---KIDAAIGGTQKCL-SVPSGMAPITYNE--------RVADVIAARKKVE  226 (416)
T ss_dssp             HHTTCEEEEECTTTTTTS----CCCTTTT---TCSEEECCSSSTT-CCCSSEEEEEECH--------HHHHHHHTC----
T ss_pred             HHcCCEEEEECCccccCC----Ccchhhc---CCCEEEecCcccc-CCCCCeEEEEECH--------HHHHHhhcccccc
Confidence            999999999999874221    1122222   2348899999973 2234589999875        5666555211   


Q ss_pred             -----------------------------------h-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHh
Q 038416          255 -----------------------------------N-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERI  298 (387)
Q Consensus       255 -----------------------------------~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l  298 (387)
                                                         . ..++++...+.++..+++...+..+++..+++.++++++.+.|
T Consensus       227 ~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L  306 (416)
T 3isl_A          227 RGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGI  306 (416)
T ss_dssp             --------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence                                               1 1335566677777777765333337888999999999999999


Q ss_pred             hcCCCCCCCCCCCc---eEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHh-HHHH
Q 038416          299 KEIPCITCPVKPQG---AMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPAT-LEDG  372 (387)
Q Consensus       299 ~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~-~~~~  372 (387)
                      +++ ++.+. .+..   +.++++.++..     .+..++...+++++||.+.+|.....++++||+++  .++++ ++++
T Consensus       307 ~~~-g~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~  379 (416)
T 3isl_A          307 KAM-GLRLF-GDDSCKMPVVTCVEIPGG-----IDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFV  379 (416)
T ss_dssp             HHT-TCCBC-SCGGGBCTTEEEEECCTT-----CCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHH
T ss_pred             HHc-CCEec-cCccccCCcEEEEeCCCC-----CCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHH
Confidence            986 77744 4433   45777777531     24667878776666999999876556789999993  34555 9999


Q ss_pred             HHHHHHHHHHhh
Q 038416          373 LERIKAFCQRHA  384 (387)
Q Consensus       373 ~~~l~~~~~~~~  384 (387)
                      +++|+++++++.
T Consensus       380 ~~~l~~~~~~~~  391 (416)
T 3isl_A          380 LAGLEAVLLRHN  391 (416)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcC
Confidence            999999998753

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=100.00  E-value=2.7e-31  Score=248.61  Aligned_cols=318  Identities=12%  Similarity=0.073  Sum_probs=232.8

Q ss_pred             CCCCCcHHHHHHHHHHhcCCC--C----CCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC
Q 038416           22 SLLSDSTVAEDAVVDALRTAH--Y----NCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR   95 (387)
Q Consensus        22 ~~~~~~~~v~~a~~~~~~~~~--~----~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~   95 (387)
                      .+++.+|.+.+++.+++....  .    ..++......++++.++++++        .+..++++++++++..++.++++
T Consensus        70 l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g--------~~~~i~~~sGt~a~~~~l~~~~~  141 (409)
T 3kki_A           70 LALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTG--------FDECLLSQSGWNANVGLLQTICQ  141 (409)
T ss_dssp             TCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHHCC
T ss_pred             cCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhC--------CCeEEEecchHHHHHHHHHHhcC
Confidence            357788999999999987621  1    112222446788999999883        23455566678999999999999


Q ss_pred             CCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCccccCCHHHHHHHH
Q 038416           96 PGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCGNVFSYQHLQKIA  174 (387)
Q Consensus        96 ~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~~~~l~  174 (387)
                      +||.|+++.|+|.++...+.  ..|.+++.++.       .|+++|++++++ ++++|++++|+||||.+++   +++|.
T Consensus       142 ~gd~Vl~~~~~~~~~~~~~~--~~g~~~~~~~~-------~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~---l~~l~  209 (409)
T 3kki_A          142 PNTNVYIDFFAHMSLWEGAR--YANAQAHPFMH-------NNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAP---LAELV  209 (409)
T ss_dssp             TTCEEEEETTSCHHHHHHHH--HTTCEEEEECT-------TCHHHHHHHHHHHCSCEEEEESBCTTTCCBCC---HHHHH
T ss_pred             CCCEEEECCCcCHHHHHHHH--HcCCeEEEecC-------CCHHHHHHHHHhcCCeEEEECCCCCCCCCcCC---HHHHH
Confidence            99999999999999988888  88999887754       479999998875 5899999999999999998   88999


Q ss_pred             HHHHhcCcEEeecccccccccC--CCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHh
Q 038416          175 RTARNLGIIVIADEVYNHLAFG--STPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKG  252 (387)
Q Consensus       175 ~~~~~~~~~li~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~  252 (387)
                      ++|++||+++|+||+|+.+.+.  +.......... .+..+++.|+||+++++|   ||+++++        ++++.+..
T Consensus       210 ~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~-~~~di~~~s~sK~~~~~g---g~v~~~~--------~~~~~~~~  277 (409)
T 3kki_A          210 NISKEFGCALLVDESHSLGTHGPNGAGLLAELGLT-REVHFMTASLAKTFAYRA---GAIWCNN--------EVNRCVPF  277 (409)
T ss_dssp             HHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCG-GGCSEEEEESSSTTCSSC---EEEEESS--------SGGGTHHH
T ss_pred             HHHHHcCCEEEEECCccccccCCCCCcchhhcCCC-CCCCEEEeecchhhCCCc---eEEEECH--------HHHHHHHH
Confidence            9999999999999999974432  22222111111 123488899999987664   9999876        45555544


Q ss_pred             hh---hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCC
Q 038416          253 CL---NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIG  329 (387)
Q Consensus       253 ~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  329 (387)
                      ..   .++...++..+.++.+.++...+  .++..++++++++++.+.|+++ ++.+.   ..++++|+.++..     .
T Consensus       278 ~~~~~~~~~~~~~~~~aa~~aal~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~~---~~~~~~~~~~~~~-----~  346 (409)
T 3kki_A          278 ISYPAIFSSTLLPYEAAGLETTLEIIES--ADNRRQHLDRMARKLRIGLSQL-GLTIR---SESQIIGLETGDE-----R  346 (409)
T ss_dssp             HCHHHHHSBCCCHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHTT-TCCCC---CSSSEEEEEEESH-----H
T ss_pred             hCcCccccCCCcHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc-CCccC---CCCCEEEEEeCCH-----H
Confidence            31   23344566666666666654221  2567788889999999999988 66622   4677888877532     1


Q ss_pred             cHHHHHHHHHHhcCeEEEcCCccCC---CCeEEEEee--CChHhHHHHHHHHHHHHHHh
Q 038416          330 DDLEFCLKLAKEESVIILPGRTVGM---KNWLRIAFA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       330 ~~~~~~~~ll~~~gi~v~~g~~~~~---~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                      +..++...+++ +||.+.++..+..   .+++|++++  .+++++++++++|+++++..
T Consensus       347 ~~~~~~~~L~~-~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~  404 (409)
T 3kki_A          347 NTEKVRDYLES-NGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNYG  404 (409)
T ss_dssp             HHHHHHHHHHH-TTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHH-CCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhcC
Confidence            24456666655 4999987543322   468999996  58999999999999998763

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=100.00  E-value=7.6e-32  Score=247.55  Aligned_cols=318  Identities=12%  Similarity=0.107  Sum_probs=221.6

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEc
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIP  103 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~  103 (387)
                      .++++.+.+++.+.... ....|+......++++.+++++    +   .++++++|+|+++++..++.++.++||.|+++
T Consensus        18 ~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~l~~~la~~~----g---~~~~v~~~~~gt~a~~~al~~~~~~gd~vi~~   89 (356)
T 1v72_A           18 AGASPEVAQALVKHSSG-QAGPYGTDELTAQVKRKFCEIF----E---RDVEVFLVPTGTAANALCLSAMTPPWGNIYCH   89 (356)
T ss_dssp             CCCCHHHHHHHHHTTSS-CCCSTTCSHHHHHHHHHHHHHH----T---SCCEEEEESCHHHHHHHHHHTSCCTTEEEEEC
T ss_pred             cCCCHHHHHHHHhhccC-cccccccchHHHHHHHHHHHHh----C---CCCcEEEeCCccHHHHHHHHHhcCCCCEEEEc
Confidence            56789999999988642 1234544334455666666665    3   23469999999999999999999999999999


Q ss_pred             CCCCcchHHH--hhccCC--CceeeeeccCCCCCccCChhhHHH-hhcc-------CceEEEEeCCCCCccccCCHHHHH
Q 038416          104 RPGYPLYEIH--AAGSNN--NLEARHYDLLPEKRWEVDLDGVEA-LADE-------NTVAIVIINPGNPCGNVFSYQHLQ  171 (387)
Q Consensus       104 ~p~~~~~~~~--~~~~~~--g~~~~~~~~~~~~~~~~~~~~l~~-~~~~-------~~~~v~l~~p~nptG~~~~~~~~~  171 (387)
                      .|+|+++...  +.  ..  |.+++.++.+   ++.+|+++|++ ++++       ++++|++++|+| ||.++|.++++
T Consensus        90 ~~~~~~~~~~~~~~--~~~~g~~~~~v~~~---~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~  163 (356)
T 1v72_A           90 PASHINNDECGAPE--FFSNGAKLMTVDGP---AAKLDIVRLRERTREKVGDVHTTQPACVSITQATE-VGSIYTLDEIE  163 (356)
T ss_dssp             TTSHHHHSSTTHHH--HHTTSCEEEECCCG---GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHH
T ss_pred             CccchhhhhchHHH--HHhCCcEEEEecCC---CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CCccCCHHHHH
Confidence            9999775544  55  55  8888888763   35789999999 8875       578999999986 99999999999


Q ss_pred             HHHHHHHhcCcEEeecccccccc--cCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHH
Q 038416          172 KIARTARNLGIIVIADEVYNHLA--FGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDS  249 (387)
Q Consensus       172 ~l~~~~~~~~~~li~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~  249 (387)
                      +|.++|++||+++|+|++|..+.  +.+.....+ .+..... +++.|+||+ +.+ ...||+++++        +++++
T Consensus       164 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~-~~~~~~d-~~~~s~sK~-g~~-~G~g~~~~~~--------~~~~~  231 (356)
T 1v72_A          164 AIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEM-TWKAGVD-ALSFGATKN-GVL-AAEAIVLFNT--------SLATE  231 (356)
T ss_dssp             HHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTT-TGGGTCC-EEEECCGGG-TCS-SCEEEEESSG--------GGHHH
T ss_pred             HHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHh-hhhhcCC-EEEEecccC-CCc-CccEEEEECH--------HHHhh
Confidence            99999999999999999998542  122222211 1111112 445689998 432 2234777754        56666


Q ss_pred             HHhhhhccCC--c-chHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccccc
Q 038416          250 IKGCLNAASH--P-VTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE  326 (387)
Q Consensus       250 ~~~~~~~~~~--~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~  326 (387)
                      +.........  . .......+...++.   ..+.+..+++.++++++.+.|++++++.+. .|..++++|++++     
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~~~~~~~~~~-----  302 (356)
T 1v72_A          232 MSYRRKRAGHLSSKMRFLSAQIDAYLTD---DLWLRNARKANAAAQRLAQGLEGLGGVEVL-GGTEANILFCRLD-----  302 (356)
T ss_dssp             HHHHHHHTTCCCSSTHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHHTTCTTEEEE-SCCCSSEEEEEEC-----
T ss_pred             HHHHhhccCchhhhHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHhhCCCcEEc-cCCCccEEEEEcC-----
Confidence            6544221111  1 22222223333332   334456677788889999999888788744 5777888888764     


Q ss_pred             CCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHhh
Q 038416          327 DIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       327 ~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~  384 (387)
                           .++...+ .++||.+.||. |+ .+++|++++  .+++++++++++|++++++..
T Consensus       303 -----~~~~~~l-~~~gi~v~~g~-~~-~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~~  354 (356)
T 1v72_A          303 -----SAMIDAL-LKAGFGFYHDR-WG-PNVVRFVTSFATTAEDVDHLLNQVRLAADRTQ  354 (356)
T ss_dssp             -----HHHHHHH-HHTTCBCBCSS-SS-TTEEEEECCTTCCHHHHHHHHHHHHHTC----
T ss_pred             -----HHHHHHH-HhcCeEEeccc-cC-CCeEEEEecCCCCHHHHHHHHHHHHHHHHhhc
Confidence                 2566666 56699999887 54 789999985  588999999999998877654

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=100.00  E-value=2e-31  Score=246.64  Aligned_cols=321  Identities=12%  Similarity=0.086  Sum_probs=225.9

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEc
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIP  103 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~  103 (387)
                      .++|+.+.+++.+....    ++.+  ...++.+.+.+++.+.++.+.+.+.+++|+|+++++..++.+++++||+|+++
T Consensus        28 ~~~~~~v~~a~~~~~~~----~~~~--~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~~gd~vi~~  101 (376)
T 3f0h_A           28 VMSSEEVRAIGAEQVPY----FRTT--EFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFTKKDKVLVI  101 (376)
T ss_dssp             CCCCHHHHHHHTSCCCC----CSSH--HHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCCTTCCEEEE
T ss_pred             CCCcHHHHHHhcCCCCC----CCCH--HHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccCCCCeEEEE
Confidence            47899999888775532    2322  22344445555554444433222445569999999999999999999999999


Q ss_pred             CCCCcchH--HHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcC
Q 038416          104 RPGYPLYE--IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLG  181 (387)
Q Consensus       104 ~p~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~  181 (387)
                      .|+|++..  ..+.  ..|.++..++.+  .++.+|+++++++++++++++++++|+||||.++|   +++|.++|+++|
T Consensus       102 ~~~~~~~~~~~~~~--~~g~~~~~v~~~--~~~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~  174 (376)
T 3f0h_A          102 DGGSFGHRFVQLCE--IHEIPYVALKLE--HGKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYD---TMMIGEFCKKNN  174 (376)
T ss_dssp             ESSHHHHHHHHHHH--HTTCCEEEEECC--TTCCCCHHHHHTTTTSCCCEEEEESEETTTTEECC---HHHHHHHHHHTT
T ss_pred             eCChhhHHHHHHHH--HcCCceEEEeCC--CCCCCCHHHHHHhhccCceEEEEecccCCcceecC---HHHHHHHHHHcC
Confidence            99887643  3456  678898888874  34678999999998889999999999999999999   899999999999


Q ss_pred             cEEeecccccccccCCCCCccccccCCCccEEEEecCccccc-ccccceEEEEeeCCCCcccchhHHHHHHhhhh-----
Q 038416          182 IIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWI-VPGWRLGWLVTSDPNGILQNSGFVDSIKGCLN-----  255 (387)
Q Consensus       182 ~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~-~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-----  255 (387)
                      +++|+|++++.+...    ..+....   ..+++.|++|+++ ++|  +|++++++        ++++.+.....     
T Consensus       175 ~~li~D~~~~~~~~~----~~~~~~~---~d~~~~s~~K~l~~~~G--~g~~~~~~--------~~~~~~~~~~~~~~~~  237 (376)
T 3f0h_A          175 MFFVCDCVSAFLADP----FNMNECG---ADVMITGSQKVLACPPG--ISVIVLAP--------RGVERVEKSKVRTMYF  237 (376)
T ss_dssp             CEEEEECTTTTTTSC----CCHHHHT---CSEEEEETTTTTCCCSS--CEEEEECH--------HHHHHHHTCCCCCSTT
T ss_pred             CEEEEEcCccccCcc----ccccccC---ccEEEecCcccccCCCc--eEEEEECH--------HHHHHhhcCCCCceee
Confidence            999999999864321    1122222   2388899999987 555  67888765        66666653211     


Q ss_pred             -------------ccCCcchHHHHHHHHHhhhccHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceE-EEEEec
Q 038416          256 -------------AASHPVTFIQAAVPRIVDETNEA-FFAKIIGLLKETADICYERIKEIPCITCPVKPQGAM-FVMVKL  320 (387)
Q Consensus       256 -------------~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~-~~~~~~  320 (387)
                                   ...+++...+.++.++++...+. .+++..++..++++++.+.|+++ ++... .+.... ++.+..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~  315 (376)
T 3f0h_A          238 DLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDL-PFELV-SESPANGVTSVHP  315 (376)
T ss_dssp             CHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS-SEEEC-CSSBBTTEEEEEE
T ss_pred             cHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCccC-ccccCceEEEEeC
Confidence                         12234444445555555543333 57888889999999999999887 45533 332222 222222


Q ss_pred             CcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHH
Q 038416          321 NVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       321 ~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~  382 (387)
                      +.      .+..++...+.+++||.+.+|.....++++|++++  .+++++++++++|++++++
T Consensus       316 ~~------~~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~  373 (376)
T 3f0h_A          316 TT------ANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR  373 (376)
T ss_dssp             SS------SCHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred             CC------CCHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence            11      24567777776666999999854445789999994  5899999999999998864

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=100.00  E-value=1.6e-32  Score=258.30  Aligned_cols=329  Identities=16%  Similarity=0.102  Sum_probs=226.6

Q ss_pred             CcHHHHHHHHHHhcCCCC--CCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHH---hhcCCCCeE
Q 038416           26 DSTVAEDAVVDALRTAHY--NCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLS---VLARPGANI  100 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~--~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~---~l~~~g~~v  100 (387)
                      .++.+.+++.+++.....  ..|.+..+..+||+.+++++.   + . .+++|++|+|+++|+..+++   .+.++| .|
T Consensus        58 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~---~-~-~~~~v~~~~g~~~a~~~~~~~a~~~~~~~-~v  131 (426)
T 1sff_A           58 LHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVP---G-D-FAKKTLLVTTGSEAVENAVKIARAATKRS-GT  131 (426)
T ss_dssp             TCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSS---C-S-SCEEEEEESSHHHHHHHHHHHHHHHHTCC-EE
T ss_pred             CCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCC---c-c-cccEEEEeCchHHHHHHHHHHHHHhhCCC-eE
Confidence            688999999999875321  134445678899999999883   1 1 34899999999999999988   666776 89


Q ss_pred             EEcCCCCcchHH-HhhccCCCce-------------eeeeccCC---CCCccCChhhHHHhhc-----cCceEEEEe-CC
Q 038416          101 LIPRPGYPLYEI-HAAGSNNNLE-------------ARHYDLLP---EKRWEVDLDGVEALAD-----ENTVAIVII-NP  157 (387)
Q Consensus       101 l~~~p~~~~~~~-~~~~~~~g~~-------------~~~~~~~~---~~~~~~~~~~l~~~~~-----~~~~~v~l~-~p  157 (387)
                      ++++|+|+++.. ...  ..|.+             +..++++.   ..++.+|+++|+++++     +++++|++. ++
T Consensus       132 i~~~p~y~~~~~~~~~--~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~  209 (426)
T 1sff_A          132 IAFSGAYHGRTHYTLA--LTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQ  209 (426)
T ss_dssp             EEETTCCCCSSHHHHH--HSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBC
T ss_pred             EEECCCcCCCchHhhh--hcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEeccc
Confidence            999999987543 333  33322             45555532   1123468999999886     345555553 34


Q ss_pred             CCCcc-ccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeC
Q 038416          158 GNPCG-NVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSD  236 (387)
Q Consensus       158 ~nptG-~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~  236 (387)
                      +| || ..+|.+++++|.++|++||+++|+||+|+++.+.+... .+...+.   .+.+.|+||+++. |+|+||+++++
T Consensus       210 ~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~---~~di~s~sK~~~~-GlriG~~~~~~  283 (426)
T 1sff_A          210 GE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLF-AMEQMGV---APDLTTFAKSIAG-GFPLAGVTGRA  283 (426)
T ss_dssp             TT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGGTTS---CCSEEEECGGGGT-SSCCEEEEEEH
T ss_pred             CC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchh-hhhhcCC---CCCEEEEcccccC-CCceEEEEEcH
Confidence            67 99 78899999999999999999999999999876655321 1111211   1234499999987 99999999976


Q ss_pred             CCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc----CCCCCCCCCCC
Q 038416          237 PNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE----IPCITCPVKPQ  311 (387)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~  311 (387)
                              ++++.+.... ..+.+++++.+.++.++++...+.   +..++++++++.+.+.|++    ++.+. ...+ 
T Consensus       284 --------~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~-  350 (426)
T 1sff_A          284 --------EVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQE---NLLQKANDLGQKLKDGLLAIAEKHPEIG-DVRG-  350 (426)
T ss_dssp             --------HHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHTCTTEE-EEEE-
T ss_pred             --------HHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCeE-EEEE-
Confidence                    5666655322 245567888888888777643221   3445566666666666655    33222 1123 


Q ss_pred             ceEEEEEecCcccc---cCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHhh
Q 038416          312 GAMFVMVKLNVSML---EDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       312 ~g~~~~~~~~~~~~---~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      .|+++|+.+.....   +...+..++...++ ++||.+.||..+  .+++||+++  .+++++++++++|++++++++
T Consensus       351 ~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~gi~v~~~~~~--~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~~  425 (426)
T 1sff_A          351 LGAMIAIELFEDGDHNKPDAKLTAEIVARAR-DKGLILLSCGPY--YNVLRILVPLTIEDAQIRQGLEIISQCFDEAK  425 (426)
T ss_dssp             ETTEEEEEEBGGGCTTSBCHHHHHHHHHHHH-HTTEECEEESTT--SCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEEEEecCccccCCChHHHHHHHHHHH-HCCcEEecCCCC--CCEEEEECCccCCHHHHHHHHHHHHHHHHHHh
Confidence            37788988853100   00013445666664 569999998753  589999984  689999999999999988763

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=100.00  E-value=9.4e-32  Score=247.77  Aligned_cols=329  Identities=15%  Similarity=0.112  Sum_probs=238.3

Q ss_pred             ccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCC-C-CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416           10 RHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSP-T-LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-~-~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      +++..+| |     .+.++.+.+++.+.+.    ..|+. . .+..++|+.++++++.    +.+++++++|+|+++++.
T Consensus         5 ~~~~~~g-p-----~~~~~~v~~a~~~~~~----~~~~~~~~~~~~~l~~~la~~~g~----~~~~~~v~~~~g~t~a~~   70 (366)
T 1m32_A            5 YLLLTPG-P-----LTTSRTVKEAMLFDSC----TWDDDYNIGVVEQIRQQLTALATA----SEGYTSVLLQGSGSYAVE   70 (366)
T ss_dssp             CEECSSS-S-----CCCCHHHHHTTCCCCC----TTSHHHHTTTHHHHHHHHHHHHCS----SSSEEEEEEESCHHHHHH
T ss_pred             cccccCC-C-----cCCCHHHHHHHhhhhc----CCCHHHHHHHHHHHHHHHHHHhCC----CCcCcEEEEecChHHHHH
Confidence            3556666 3     3588999988877432    12221 1 5778999999999841    122357999999999999


Q ss_pred             HHHHhhcCCCCeEEEcC-CCCcc-hHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc--CceEEEEeCCCCCccc
Q 038416           88 ISLSVLARPGANILIPR-PGYPL-YEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE--NTVAIVIINPGNPCGN  163 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~-p~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~v~l~~p~nptG~  163 (387)
                      .++.+++++||+|++.. +.|.. +...+.  ..|.++..++++.  ++.+|+++|++++++  ++++|++++|+||||.
T Consensus        71 ~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~--~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~  146 (366)
T 1m32_A           71 AVLGSALGPQDKVLIVSNGAYGARMVEMAG--LMGIAHHAYDCGE--VARPDVQAIDAILNADPTISHIAMVHSETTTGM  146 (366)
T ss_dssp             HHHHHSCCTTCCEEEEESSHHHHHHHHHHH--HHTCCEEEEECCT--TSCCCHHHHHHHHHHCTTCCEEEEESEETTTTE
T ss_pred             HHHHHhcCCCCeEEEEeCCCccHHHHHHHH--HhCCceEEEeCCC--CCCCCHHHHHHHHhcCCCeEEEEEecccCCcce
Confidence            99999999999988776 45543 556667  7899999888753  456899999999875  4788999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccc
Q 038416          164 VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQN  243 (387)
Q Consensus       164 ~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~  243 (387)
                      ++|   +++|.++|+++|+++|+|++|+....    ...+...   +..+++.|+||+++. +.++||+++++       
T Consensus       147 ~~~---l~~i~~l~~~~~~~li~Dea~~~~~~----~~~~~~~---~~di~~~s~~K~~~~-~~g~G~~~~~~-------  208 (366)
T 1m32_A          147 LNP---IDEVGALAHRYGKTYIVDAMSSFGGI----PMDIAAL---HIDYLISSANKCIQG-VPGFAFVIARE-------  208 (366)
T ss_dssp             ECC---HHHHHHHHHHHTCEEEEECTTTTTTS----CCCTTTT---TCSEEEEESSSTTCC-CSSEEEEEEEH-------
T ss_pred             ecC---HHHHHHHHHHcCCEEEEECCccccCc----Ccccccc---CccEEEecCcccccC-CCceEEEEECH-------
Confidence            998   78999999999999999999985321    1122222   234889999997532 23479999976       


Q ss_pred             hhHHHHHHhhh------------------h-ccCCcchHHHHHHHHHhhhccHHH-HHHHHHHHHHHHHHHHHHhhcCCC
Q 038416          244 SGFVDSIKGCL------------------N-AASHPVTFIQAAVPRIVDETNEAF-FAKIIGLLKETADICYERIKEIPC  303 (387)
Q Consensus       244 ~~~~~~~~~~~------------------~-~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~  303 (387)
                       ++++.+....                  . ..++++...+.++..+++...+.. +++..++++++++++.+.|+++ +
T Consensus       209 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~  286 (366)
T 1m32_A          209 -QKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-G  286 (366)
T ss_dssp             -HHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             -HHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC-C
Confidence             4544433210                  0 124667777777777776533322 6778889999999999999988 7


Q ss_pred             CCCCCCC---CceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHH
Q 038416          304 ITCPVKP---QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKA  378 (387)
Q Consensus       304 ~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~  378 (387)
                      +.+. .+   ..++++|+.++..  ++ .+..++...+. ++||.+.+|..| ..+++|++++  .+++++++++++|++
T Consensus       287 ~~~~-~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~l~-~~gi~v~~~~~~-~~~~iRi~~~~~~~~~~i~~~~~~l~~  360 (366)
T 1m32_A          287 FNTL-LDDELHSPIITAFYSPED--PQ-YRFSEFYRRLK-EQGFVIYPGKVS-QSDCFRIGNIGEVYAADITALLTAIRT  360 (366)
T ss_dssp             CCBS-SCGGGBCSSEEEEECCCC--TT-CCHHHHHHHHH-HTTEECEECCCS-SSCEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred             Ceec-cCchhcCceEEEEEcCcc--CC-CCHHHHHHHHH-HCCEEEECCcCC-CCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence            7744 33   3566888887630  01 14566777665 559999998766 4689999996  478999999999988


Q ss_pred             HHHH
Q 038416          379 FCQR  382 (387)
Q Consensus       379 ~~~~  382 (387)
                      ++++
T Consensus       361 ~~~~  364 (366)
T 1m32_A          361 AMYW  364 (366)
T ss_dssp             HCTT
T ss_pred             HHHh
Confidence            8754

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.2e-31  Score=250.73  Aligned_cols=318  Identities=12%  Similarity=0.112  Sum_probs=232.5

Q ss_pred             CCcHHHHHHHHHHhcCCCC---CCCC----CCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh---c
Q 038416           25 SDSTVAEDAVVDALRTAHY---NCYS----PTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL---A   94 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~---~~y~----~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l---~   94 (387)
                      +.++.+.+++.+.+.....   ..|.    ......++|+.+++++      ++++++|++|+|+++++..++.++   .
T Consensus        37 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~------g~~~~~v~~~~g~t~al~~~~~~l~~~~  110 (406)
T 3cai_A           37 LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLV------NADPGGVVLGADRAVLLSLLAEASSSRA  110 (406)
T ss_dssp             CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHH------TCCGGGEEEESCHHHHHHHHHHHTGGGG
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHh------CCCCCeEEEeCChHHHHHHHHHHHhhcc
Confidence            6789999999998874211   1232    1235678889999988      456789999999999999999987   7


Q ss_pred             CCCCeEEEcCCCCcchHHHhhc--cCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHH
Q 038416           95 RPGANILIPRPGYPLYEIHAAG--SNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQK  172 (387)
Q Consensus        95 ~~g~~vl~~~p~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~  172 (387)
                      ++||+|+++.|+|+++...+..  ...|.+++.++++++ ++.+|+++|++++++++++|++++|+||||.+++   +++
T Consensus       111 ~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~---l~~  186 (406)
T 3cai_A          111 GLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIE-TGELPTWQWESLISKSTRLVAVNSASGTLGGVTD---LRA  186 (406)
T ss_dssp             BTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTT-TCCCCGGGHHHHCCTTEEEEEEESBCTTTCBBCC---CHH
T ss_pred             CCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcc-cCCcCHHHHHHHhCCCceEEEEeCCcCCccccCC---HHH
Confidence            8999999999999986554440  026889999987633 4578999999999889999999999999999998   788


Q ss_pred             HHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceE-EEEeeCCCCcccchhHHHHHH
Q 038416          173 IARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLG-WLVTSDPNGILQNSGFVDSIK  251 (387)
Q Consensus       173 l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G-~i~~~~~~~~~~~~~~~~~~~  251 (387)
                      |.++|+++|+++|+|++|+.    +.....+..++   ..+++.|++|.++ ++  +| |+++++        ++++.++
T Consensus       187 i~~l~~~~~~~li~D~a~~~----g~~~~~~~~~~---~d~~~~s~~K~~g-~~--~G~~~~~~~--------~~~~~l~  248 (406)
T 3cai_A          187 MTKLVHDVGALVVVDHSAAA----PYRLLDIRETD---ADVVTVNAHAWGG-PP--IGAMVFRDP--------SVMNSFG  248 (406)
T ss_dssp             HHHHHHHTTCEEEEECTTTT----TTCCCCHHHHC---CSEEEEEGGGGTS-CS--CEEEEESCH--------HHHHTSC
T ss_pred             HHHHHHHcCCEEEEEccccc----CCCCCCchhcC---CCEEEeehhhhcC-CC--cCeEEEEeh--------HHHhhcC
Confidence            99999999999999999984    21112222232   3488999999864 43  89 999865        5666554


Q ss_pred             hhhh----------ccCCcchHHHHHHHHHhhhccH--------------HHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 038416          252 GCLN----------AASHPVTFIQAAVPRIVDETNE--------------AFFAKIIGLLKETADICYERIKEIPCITCP  307 (387)
Q Consensus       252 ~~~~----------~~~~~~~~~~~~~~~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  307 (387)
                      ....          ..++++...+.++..+++...+              .++++..++++++++++.+.|++++++.+.
T Consensus       249 ~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  328 (406)
T 3cai_A          249 SVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLI  328 (406)
T ss_dssp             CCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEEC
T ss_pred             CcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEc
Confidence            3321          1344566666555555543221              157788888999999999999998887743


Q ss_pred             CCCC--ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCC------ccCC---CCeEEEEeeC--ChHhHHHHHH
Q 038416          308 VKPQ--GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGR------TVGM---KNWLRIAFAA--EPATLEDGLE  374 (387)
Q Consensus       308 ~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~------~~~~---~~~~Ri~~~~--~~e~~~~~~~  374 (387)
                       .+.  .+.++++.++.      .+..++...+ .++||.+.+|.      .++.   .+++||+++.  ++++++++++
T Consensus       329 -~~~~~~~~~~~~~~~~------~~~~~~~~~L-~~~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~  400 (406)
T 3cai_A          329 -GRPEAQIPVVSFAVHK------VPADRVVQRL-ADNGILAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVR  400 (406)
T ss_dssp             -CCCSSBCSEEEEEETT------BCHHHHHHHH-HHTTEECEECCSCHHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHH
T ss_pred             -CCccccCCEEEEEECC------cCHHHHHHHH-HHCCcEEecCChHHHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHH
Confidence             442  23366776652      1455666666 56799999986      3332   4789999964  7899999999


Q ss_pred             HHHH
Q 038416          375 RIKA  378 (387)
Q Consensus       375 ~l~~  378 (387)
                      +|++
T Consensus       401 ~l~~  404 (406)
T 3cai_A          401 ALAS  404 (406)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            8864

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=100.00  E-value=3.8e-31  Score=244.28  Aligned_cols=332  Identities=16%  Similarity=0.074  Sum_probs=224.4

Q ss_pred             cccc-ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCCh
Q 038416            4 RKGQ-ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGC   82 (387)
Q Consensus         4 ~~g~-~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~   82 (387)
                      ..|. +++ +.+.|.+    +.++++.+.+++.    .     |.   +...+++.+++++.+.++.. +++++++++|+
T Consensus        24 ~~g~~~v~-~~~~~~~----~~~~~~~v~~a~~----~-----~~---~~~~~~~~~~~~~a~~~g~~-~~~~~~~~~gg   85 (374)
T 2aeu_A           24 EKGRDALY-DLSGLSG----GFLIDEKDKALLN----T-----YI---GSSYFAEKVNEYGLKHLGGD-ENDKCVGFNRT   85 (374)
T ss_dssp             HTCGGGCE-ECSSCCC----CCCCCHHHHHHHT----S-----TT---HHHHHHHHHHHHHHHHHTCC-TTEEEEEESSH
T ss_pred             ccCcccee-eecccCC----CCCCCHHHHHHHH----H-----hc---CchHHHHHHHHHHHHHhCCC-CcceEEEEcCh
Confidence            3565 455 6555544    6789999999886    1     11   11344555665554444422 34789999999


Q ss_pred             HHHHHHHHHhhcCCCCeEEEcCCCCcchHH---HhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceE-EEEeCCC
Q 038416           83 SQAIEISLSVLARPGANILIPRPGYPLYEI---HAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVA-IVIINPG  158 (387)
Q Consensus        83 ~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-v~l~~p~  158 (387)
                      ++++..++.++  +||+|+++.|+|+++..   .+.  ..|.+++.+         .|+++++++ ++++++ |++++|+
T Consensus        86 t~a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~~~~--~~g~~~~~v---------~d~~~l~~~-~~~~~~~v~~~~p~  151 (374)
T 2aeu_A           86 SSAILATILAL--KPKKVIHYLPELPGHPSIERSCK--IVNAKYFES---------DKVGEILNK-IDKDTLVIITGSTM  151 (374)
T ss_dssp             HHHHHHHHHHH--CCSEEEEECSSSSCCTHHHHHHH--HTTCEEEEE---------SCHHHHHTT-CCTTEEEEEECBCT
T ss_pred             HHHHHHHHHhC--CCCEEEEecCCCCccHHHHHHHH--HcCcEEEEe---------CCHHHHHhc-CCCccEEEEEccCC
Confidence            99999999988  89999999998876433   566  788888776         278999988 778999 9999999


Q ss_pred             CCccccCCHHHHHHHHHHHHhcCcEEeeccccccccc-CCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCC
Q 038416          159 NPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAF-GSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDP  237 (387)
Q Consensus       159 nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~  237 (387)
                      ||||.  +..++++|.++|+++|+++|+|++|+.+.. ......++ ...   ..+++.|+||+  ++|+|+||+++++ 
T Consensus       152 nptG~--~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~-~~~---~di~~~S~sK~--l~g~~~G~~~~~~-  222 (374)
T 2aeu_A          152 DLKVI--ELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPAL-KLG---ADLVVTSTDKL--MEGPRGGLLAGKK-  222 (374)
T ss_dssp             TSCBC--CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHH-HHT---CSEEEEETTSS--SSSCSCEEEEEEH-
T ss_pred             CCCCC--CcccHHHHHHHHHHcCCEEEEECCcccccccccccCCcc-ccC---CcEEEecCccc--ccCcceEEEEECH-
Confidence            99996  668899999999999999999999987531 01010011 122   24888999998  4578999999876 


Q ss_pred             CCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHH----HHHHHHHhhcC---CCCCCCCC
Q 038416          238 NGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKET----ADICYERIKEI---PCITCPVK  309 (387)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~---~~~~~~~~  309 (387)
                             ++++.++.... .+.+++++.+.++...++....+.+.+..+..+..    ++.+.+.|..+   +++.+...
T Consensus       223 -------~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~  295 (374)
T 2aeu_A          223 -------ELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERT  295 (374)
T ss_dssp             -------HHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEEC
T ss_pred             -------HHHHHHHHhhccccCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeC
Confidence                   78888876654 34456778888888887764332233333333332    45555555543   24442224


Q ss_pred             CCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccC-CCCeEEEEeeC-C--hHhHHHHHHHHHHHHHHhhh
Q 038416          310 PQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG-MKNWLRIAFAA-E--PATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       310 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~-~~~~~Ri~~~~-~--~e~~~~~~~~l~~~~~~~~~  385 (387)
                      |.+.++.|..++...  ...++.+++..+++++||.+.||..|. ..+++||+++. +  +++++++.+.|+++++++.+
T Consensus       296 ~~g~~~~~~~~~~~~--~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~~  373 (374)
T 2aeu_A          296 PTGFVIKRVYKDDTI--NIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAFK  373 (374)
T ss_dssp             SSEEEEEEEESSHHH--HHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHTC
T ss_pred             CceEEEEeecccccc--cccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHHhc
Confidence            555555554443100  000112366677788899999997763 35789999964 2  33588888888888887654

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=100.00  E-value=3.8e-31  Score=243.42  Aligned_cols=318  Identities=11%  Similarity=0.035  Sum_probs=229.9

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEc
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIP  103 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~  103 (387)
                      .++|+.+.+++.+.+.+.....+.......++.+.+.+++.+.++.. ++++|++|+|+++++..++.++.++ +.+++.
T Consensus        13 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~v~~~~g~t~al~~~~~~l~~~-~~i~~~   90 (362)
T 3ffr_A           13 SELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELP-SNYEVLFLASATEIWERIIQNCVEK-KSFHCV   90 (362)
T ss_dssp             CCCCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCC-TTEEEEEESCHHHHHHHHHHHHCSS-EEEEEE
T ss_pred             cCCCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCC-CCcEEEEeCCchHHHHHHHHhccCC-cEEEEc
Confidence            36788999888888876532111122233355555666665555533 5678999999999999999999877 444454


Q ss_pred             CCCCc-chHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhc-C
Q 038416          104 RPGYP-LYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNL-G  181 (387)
Q Consensus       104 ~p~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~-~  181 (387)
                      .+.|. .+...+.  ..|.++..++.+  .++.+|+++++  +++++++|++++|+||||.+++   +++|.++|+++ |
T Consensus        91 ~~~~~~~~~~~~~--~~g~~~~~v~~~--~~~~~d~~~l~--~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~p~  161 (362)
T 3ffr_A           91 NGSFSKRFYEFAG--ELGREAYKEEAA--FGKGFYPADIT--VPADAEIICLTHNETSSGVSMP---VEDINTFRDKNKD  161 (362)
T ss_dssp             CSHHHHHHHHHHH--HTTCEEEEEECC--TTCCCCGGGCC--CCTTCCEEEEESEETTTTEECC---HHHHTTSGGGSTT
T ss_pred             CcHHHHHHHHHHH--HhCCCeEEEecC--CCCCCCHHHHh--ccCCccEEEEEcCCCCcceeCC---HHHHHHHHHhCCC
Confidence            54444 2344666  789999998874  34678999988  7788999999999999999998   77888899999 9


Q ss_pred             cEEeecccccccccCCCCCccccccCCCccEEEEecCccccc-ccccceEEEEeeCCCCcccchhHHHHHHhhhh-----
Q 038416          182 IIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWI-VPGWRLGWLVTSDPNGILQNSGFVDSIKGCLN-----  255 (387)
Q Consensus       182 ~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~-~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-----  255 (387)
                      +++|+|++|+.+...    ..+..     ..+++.|+||+++ ++|  +|++++++        ++++++.....     
T Consensus       162 ~~li~D~a~~~~~~~----~~~~~-----~d~~~~s~~K~~~~~~G--~g~~~~~~--------~~~~~~~~~~~gg~~~  222 (362)
T 3ffr_A          162 ALIFVDAVSSLPYPK----FDWTK-----IDSVFFSVQKCFGLPAG--LGVWILND--------RVIEKSKALLAKRKSI  222 (362)
T ss_dssp             SEEEEECTTTTTSSC----CCTTS-----CSEEEEETTSTTCCCSC--CEEEEEEH--------HHHHHHHHHHHTTCCC
T ss_pred             CEEEEecccccCCcc----cChhH-----CcEEEEecccccCCCCc--eEEEEECH--------HHHHHhhhccccCCCC
Confidence            999999999853311    11211     2388899999987 677  57777765        56666654321     


Q ss_pred             -----------------ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC----CceE
Q 038416          256 -----------------AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKP----QGAM  314 (387)
Q Consensus       256 -----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~g~  314 (387)
                                       ...+++...+.++..+++...+..++++.+++.++++++.+.|+++|++... .+    ..+.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~~~~~~~  301 (362)
T 3ffr_A          223 GTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFG-VEDAKLRSMT  301 (362)
T ss_dssp             CSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEES-SSCGGGBCSS
T ss_pred             cccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceec-cCChhhcCCc
Confidence                             1455666777777776664333447888899999999999999999888744 32    2355


Q ss_pred             EEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHH
Q 038416          315 FVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFC  380 (387)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~  380 (387)
                      ++|+.++.       +..++...+.+ +||.+.+|..+..++++||+++  .++++++++++.|++++
T Consensus       302 ~~~~~~~~-------~~~~~~~~l~~-~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~  361 (362)
T 3ffr_A          302 TIVANTTM-------LPGEINKILEP-FDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKI  361 (362)
T ss_dssp             EEEEEESS-------CHHHHHHHHGG-GTEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             eEEEecCC-------CHHHHHHHHHH-CCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            66766653       35677777655 4999999877666889999995  47899999999987753

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=100.00  E-value=3.1e-31  Score=243.73  Aligned_cols=319  Identities=13%  Similarity=0.088  Sum_probs=229.5

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcC
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPR  104 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~  104 (387)
                      ++++.+.+++.+.+.     .|....+..++++.+++++.+.++  .++++|++|+|+++++..++.+++++||+|+++.
T Consensus        25 ~~~~~v~~a~~~~~~-----~~~~~~g~~~~~~~~~~~l~~~~g--~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~   97 (359)
T 1svv_A           25 GMHPKILDLMARDNM-----TQHAGYGQDSHCAKAARLIGELLE--RPDADVHFISGGTQTNLIACSLALRPWEAVIATQ   97 (359)
T ss_dssp             CCCHHHHHHHHHHTT-----CCCCSTTCSHHHHHHHHHHHHHHT--CTTSEEEEESCHHHHHHHHHHHHCCTTEEEEEET
T ss_pred             CCCHHHHHHHHHHHh-----hccccccccHHHHHHHHHHHHHhC--CCCccEEEeCCchHHHHHHHHHHhCCCCEEEEcc
Confidence            688999999999875     354445667788888888877665  5678899999999999999999999999999999


Q ss_pred             CCCcchHH--HhhccCCCceeeeeccCCCCCccCChhhHHHhhccC-------ceEEEEeCCCCCccccCCHHHHHHHHH
Q 038416          105 PGYPLYEI--HAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADEN-------TVAIVIINPGNPCGNVFSYQHLQKIAR  175 (387)
Q Consensus       105 p~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~v~l~~p~nptG~~~~~~~~~~l~~  175 (387)
                      |+|+++..  .++  ..|.+++.++.+   ++.+|+++|+++++++       +++|++++| ||||.++|.+++++|.+
T Consensus        98 ~~~~~~~~~~~~~--~~g~~~~~v~~~---~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~  171 (359)
T 1svv_A           98 LGHISTHETGAIE--ATGHKVVTAPCP---DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISA  171 (359)
T ss_dssp             TSHHHHSSTTHHH--HTTCCEEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHH
T ss_pred             cchHHHHHHHHHh--cCCCeeEEEeCC---CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHH
Confidence            99998876  367  789999998863   5689999999998766       889999999 79999999999999999


Q ss_pred             HHHhcCcEEeecccccccccCCCCCccccccC-CCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhh
Q 038416          176 TARNLGIIVIADEVYNHLAFGSTPYVPMGVFG-SIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL  254 (387)
Q Consensus       176 ~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~  254 (387)
                      +|+++|+++|+|++|.++.+...+. ....+. .....+++.|.+|. +.+ ..+|++++++        ++++.+....
T Consensus       172 ~~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~~d~~~~s~~K~-g~~-~~~g~l~~~~--------~~~~~~~~~~  240 (359)
T 1svv_A          172 SCKEHGLYLFLDGARLASALSSPVN-DLTLADIARLTDMFYIGATKA-GGM-FGEALIILND--------ALKPNARHLI  240 (359)
T ss_dssp             HHHHHTCEEEEECTTHHHHHTSTTC-CCCHHHHHHHCSEEEEECTTT-TCS-SCEEEEECSG--------GGCTTHHHHH
T ss_pred             HHHHhCCEEEEEccchhhhhcCCCc-chhhhhhhhcCCEEEEecccC-CCC-CceEEEEEcc--------cHHHHHHHHH
Confidence            9999999999999996543222111 111100 00112677889997 333 4578888864        4444444331


Q ss_pred             ---hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcH
Q 038416          255 ---NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDD  331 (387)
Q Consensus       255 ---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  331 (387)
                         ......+......+..+++.   ..+++..+++.++++++.+.| +.+++.+. .|.+++++|+.++          
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~l~~~L-~~~~~~~~-~~~~~~~~~~~~~----------  305 (359)
T 1svv_A          241 KQRGALMAKGWLLGIQFEVLMKD---NLFFELGAHSNKMAAILKAGL-EACGIRLA-WPSASNQLFPILE----------  305 (359)
T ss_dssp             HHTTCCCTTTHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHH-HHTTCCBS-SCCSSSEECBEEE----------
T ss_pred             hcCCcccccchhhHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHh-ccCCeEEc-cCCccceEEEEcC----------
Confidence               11111122223333444543   345778888899999999999 55688744 5777888887653          


Q ss_pred             HHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHh
Q 038416          332 LEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       332 ~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                      .++...+++++||.+.+. .....+++|++++  .+++++++++++|+++++++
T Consensus       306 ~~~~~~l~~~~gi~v~~~-~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  358 (359)
T 1svv_A          306 NTMIAELNNDFDMYTVEP-LKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST  358 (359)
T ss_dssp             HHHHHHHTTTEECEEEEE-ETTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHhcCEEEEec-ccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence            356677755559988431 1123568999885  58999999999999887654

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=100.00  E-value=3.3e-30  Score=239.60  Aligned_cols=321  Identities=14%  Similarity=0.134  Sum_probs=231.7

Q ss_pred             CCCCCC-c---HHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh-cC
Q 038416           21 VSLLSD-S---TVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL-AR   95 (387)
Q Consensus        21 ~~~~~~-~---~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~   95 (387)
                      .|+|++ |   +.+.+++.+.+..... .|.+..+..++|+.++++++      .+ +.|++++ |++|+..++.++ ++
T Consensus         6 ~p~f~~~p~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~l~~~la~~~~------~~-~~i~~~s-Gt~al~~~l~~l~~~   76 (388)
T 1b9h_A            6 APEFPAWPQYDDAERNGLVRALEQGQW-WRMGGDEVNSFEREFAAHHG------AA-HALAVTN-GTHALELALQVMGVG   76 (388)
T ss_dssp             CCCCCCSSCCCHHHHHHHHHHHHTSCC-BTTTCSHHHHHHHHHHHHTT------CS-EEEEESC-HHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHcCCe-eecCCHHHHHHHHHHHHHhC------CC-eEEEeCC-HHHHHHHHHHHcCCC
Confidence            347776 6   9999999999976433 45555678999999999984      22 4566665 489999999999 89


Q ss_pred             CCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHH
Q 038416           96 PGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIAR  175 (387)
Q Consensus        96 ~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~  175 (387)
                      +||+|+++.|+|+++...+.  ..|.+++.++++++ ++.+|+++|++++++++++|+   |+||||.+.+   +++|.+
T Consensus        77 ~gd~Vi~~~~~~~~~~~~~~--~~g~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~---l~~i~~  147 (388)
T 1b9h_A           77 PGTEVIVPAFTFISSSQAAQ--RLGAVTVPVDVDAA-TYNLDPEAVAAAVTPRTKVIM---PVHMAGLMAD---MDALAK  147 (388)
T ss_dssp             TTCEEEEESSSCTHHHHHHH--HTTCEEEEECBCTT-TCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCC---HHHHHH
T ss_pred             CcCEEEECCCccHHHHHHHH--HcCCEEEEEecCCC-cCCCCHHHHHHhcCcCceEEE---EeCCccCcCC---HHHHHH
Confidence            99999999999999999999  99999999998643 467899999999987777766   8999999976   788899


Q ss_pred             HHHhcCcEEeecccccc-cccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhH--HHHHHh
Q 038416          176 TARNLGIIVIADEVYNH-LAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF--VDSIKG  252 (387)
Q Consensus       176 ~~~~~~~~li~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~--~~~~~~  252 (387)
                      +|+++|+++|+|++|+. ..+.+.   ++..+.    .+.+.||||.++++|.++||+++++.       .+  ++.+..
T Consensus       148 la~~~~~~li~D~a~~~g~~~~~~---~~~~~~----~i~~~S~s~~K~l~g~~~G~~~~~~~-------~~~~~~~~~~  213 (388)
T 1b9h_A          148 ISADTGVPLLQDAAHAHGARWQGK---RVGELD----SIATFSFQNGKLMTAGEGGAVVFPDG-------ETEKYETAFL  213 (388)
T ss_dssp             HHHHHTCCBCEECTTCTTCEETTE---EGGGSS----SCEEEECCTTSSSCSSSCEEEEECTT-------CHHHHHHHHH
T ss_pred             HHHHcCCEEEEecchhcCCccCCe---eccccc----ceEEEEccCCCcccCCCeEEEEECCH-------HHHHHHHHHH
Confidence            99999999999999985 333322   122222    37788999777677789999998752       14  454433


Q ss_pred             hhhc----------------cCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC-----CC
Q 038416          253 CLNA----------------ASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVK-----PQ  311 (387)
Q Consensus       253 ~~~~----------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~  311 (387)
                      ....                +...+....+++...+     +++++..++++++++++.+.|+++|++.....     +.
T Consensus       214 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~-----~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~  288 (388)
T 1b9h_A          214 RHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQL-----ARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRN  288 (388)
T ss_dssp             HTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBC
T ss_pred             HHhCCCCccCccceeecccccCCcCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCcc
Confidence            2210                1113333333332222     33566777888889999999998888774321     34


Q ss_pred             ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccC----------------------C-------CCeEEEEe
Q 038416          312 GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG----------------------M-------KNWLRIAF  362 (387)
Q Consensus       312 ~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~----------------------~-------~~~~Ri~~  362 (387)
                      +++++|+.++...   ..+..++...| .++||.+.++....                      .       .+.+|+++
T Consensus       289 ~~~~~~~~~~~~~---~~~~~~l~~~L-~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~  364 (388)
T 1b9h_A          289 SHYMAMFRIPGLT---EERRNALVDRL-VEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHH  364 (388)
T ss_dssp             CCSEEEEECTTCC---HHHHHHHHHHH-HHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEG
T ss_pred             ceEEEEEEeCCcC---cccHHHHHHHH-HHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecC
Confidence            5788898886310   00344566666 45799998764311                      0       13599999


Q ss_pred             e--C-ChHhHHHHHHHHHHHHHH
Q 038416          363 A--A-EPATLEDGLERIKAFCQR  382 (387)
Q Consensus       363 ~--~-~~e~~~~~~~~l~~~~~~  382 (387)
                      +  . ++++++.+++.|++++++
T Consensus       365 ~~~~~t~edi~~~~~~l~~~~~~  387 (388)
T 1b9h_A          365 RVLLAGEPELHATAEIIADAVAR  387 (388)
T ss_dssp             GGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhh
Confidence            4  5 889999999999988764

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=100.00  E-value=1.4e-31  Score=250.33  Aligned_cols=322  Identities=17%  Similarity=0.230  Sum_probs=225.6

Q ss_pred             CcHHHHHHHHHHhcCCCC--CCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC-------C
Q 038416           26 DSTVAEDAVVDALRTAHY--NCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR-------P   96 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~--~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-------~   96 (387)
                      .+|.+.+++.+++.....  ..|+. ....++++.+++++        ..+++++|+|+++|+..++.++..       +
T Consensus        56 ~~p~v~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~~--------~~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~  126 (406)
T 4adb_A           56 AHPELREALNEQASKFWHTGNGYTN-EPVLRLAKKLIDAT--------FADRVFFCNSGAEANEAALKLARKFAHDRYGS  126 (406)
T ss_dssp             TCHHHHHHHHHHHTTCSCCCTTSCC-HHHHHHHHHHHHHS--------SCSEEEEESSHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             CCHHHHHHHHHHHHhcccccCCcCC-HHHHHHHHHHHhhC--------CCCeEEEeCcHHHHHHHHHHHHHHHHHhcCCC
Confidence            589999999999875311  12222 23455555555554        345999999999999999998864       6


Q ss_pred             C-CeEEEcCCCCcchHHHhhccCCCceeee-eccCC-CCCcc----CChhhHHHhhccCceEEEEeCCCCCccccC--CH
Q 038416           97 G-ANILIPRPGYPLYEIHAAGSNNNLEARH-YDLLP-EKRWE----VDLDGVEALADENTVAIVIINPGNPCGNVF--SY  167 (387)
Q Consensus        97 g-~~vl~~~p~~~~~~~~~~~~~~g~~~~~-~~~~~-~~~~~----~~~~~l~~~~~~~~~~v~l~~p~nptG~~~--~~  167 (387)
                      | |.|+++.|+|+++...+.  ..+..... ....+ ..+..    .|+++|++++++++++|+++ |+||+|.++  +.
T Consensus       127 g~~~vi~~~~~y~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~-p~np~g~~~~~~~  203 (406)
T 4adb_A          127 HKSGIVAFKNAFHGRTLFTV--SAGGQPAYSQDFAPLPADIRHAAYNDINSASALIDDSTCAVIVE-PIQGEGGVVPASN  203 (406)
T ss_dssp             TCCEEEEETTCCCCSSHHHH--HHSSCGGGTGGGCSCCSSEEEECTTCHHHHHTTCSTTEEEEEEC-SEETTTTSEECCH
T ss_pred             CCcEEEEECCCcCCCcHHHh--hccCCccccccCCCCCCCceEeCCCcHHHHHHHhcCCeEEEEEe-CCcCCCCCccCCH
Confidence            6 999999999998754444  33322110 00000 01111    37999999998888888887 999999987  99


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      +++++|.++|++||+++|+||+|+++.+.+.... +...+...+++   |+||.++ +|+|+||+++++        +++
T Consensus       204 ~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~-~~~~~~~~d~~---t~sK~~~-~G~r~G~~~~~~--------~~~  270 (406)
T 4adb_A          204 AFLQGLRELCNRHNALLIFDEVQTGVGRTGELYA-YMHYGVTPDLL---TTAKALG-GGFPVGALLATE--------ECA  270 (406)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSH-HHHHTCCCSEE---EECGGGG-TTSCCEEEEECH--------HHH
T ss_pred             HHHHHHHHHHHHcCCEEEEeccccCCCccchhHH-HHhcCCCCCEE---Eechhhc-CCCCeEEEEEcH--------HHH
Confidence            9999999999999999999999998776654332 22222222333   6799998 899999999875        677


Q ss_pred             HHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcC----CCCCCCCCCCceEEEEEecCc
Q 038416          248 DSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEI----PCITCPVKPQGAMFVMVKLNV  322 (387)
Q Consensus       248 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~g~~~~~~~~~  322 (387)
                      +.+.... ..+++++++.+.++..+++...+   ++..++++++++.+.+.|+++    +.+. . .+..|.++++.++.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~-~~~~g~~~~~~~~~  345 (406)
T 4adb_A          271 RVMTVGTHGTTYGGNPLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTINHRYGLFS-E-VRGLGLLIGCVLNA  345 (406)
T ss_dssp             HTCCTTSSCCSSTTCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEE-E-EEEETTEEEEEECT
T ss_pred             hhhccCCcCCCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCce-E-EEEEEEEEEEEEeC
Confidence            7776543 24567888889888888775322   455666777777777777654    1111 1 22346678887764


Q ss_pred             ccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHHHHhhh
Q 038416          323 SMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       323 ~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      ...   .+..++...+. ++||.+.++.    .+++|+++  ..+++++++++++|+++++++++
T Consensus       346 ~~~---~~~~~~~~~l~-~~gi~v~~~~----~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~  402 (406)
T 4adb_A          346 DYA---GQAKQISQEAA-KAGVMVLIAG----GNVVRFAPALNVSEEEVTTGLDRFAAACEHFVS  402 (406)
T ss_dssp             TTT---TCHHHHHHHHH-HTTEECEESS----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcH---HHHHHHHHHHH-HCCcEEeecC----CCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            210   13556777665 5599999864    68999965  56899999999999999988764

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=100.00  E-value=3.2e-31  Score=245.22  Aligned_cols=324  Identities=15%  Similarity=0.155  Sum_probs=230.1

Q ss_pred             cccCCCCCCCCCCCCCC-CcHHHHHHHHHHhcCC--CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHH
Q 038416            9 TRHSPWPRRPLGVSLLS-DSTVAEDAVVDALRTA--HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQA   85 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~--~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a   85 (387)
                      .+++.+.|.+.  ..++ +++.+.+++.+.+...  ....|+. .+..++++.+++++      ++ ++++++|+|++++
T Consensus        29 ~~ld~~~~~~~--~~~g~~~~~v~~a~~~~~~~~~~~~~~y~~-~~~~~l~~~la~~~------g~-~~~v~~~~g~t~a   98 (375)
T 2eh6_A           29 EYLDFVSGIGV--NSLGHAYPKLTEALKEQVEKLLHVSNLYEN-PWQEELAHKLVKHF------WT-EGKVFFANSGTES   98 (375)
T ss_dssp             EEEESSHHHHT--CTTCBSCHHHHHHHHHHHHHCSCCCTTBCC-HHHHHHHHHHHHTS------SS-CEEEEEESSHHHH
T ss_pred             EEEEcCCcccc--cccCCCCHHHHHHHHHHHHhccccCcccCC-HHHHHHHHHHHhhc------CC-CCeEEEeCchHHH
Confidence            34455444321  1355 7899999999988642  1224643 45678888888876      33 3899999999999


Q ss_pred             HHHHHHh---hc---CCC-CeEEEcCCCCcchHHHhhccCCCceee----eeccCCCCCcc----CChhhHHHhhccCce
Q 038416           86 IEISLSV---LA---RPG-ANILIPRPGYPLYEIHAAGSNNNLEAR----HYDLLPEKRWE----VDLDGVEALADENTV  150 (387)
Q Consensus        86 ~~~~~~~---l~---~~g-~~vl~~~p~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~----~~~~~l~~~~~~~~~  150 (387)
                      +..++.+   +.   ++| |+|++++|+|+.+...+.  ..+....    ..++.  .+..    .|+++|+++++++++
T Consensus        99 ~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~l~~~l~~~~~  174 (375)
T 2eh6_A           99 VEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSL--SATGQPKFHKGFEPLV--PGFSYAKLNDIDSVYKLLDEETA  174 (375)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHH--HHCBCGGGTTTTCSCC--SSEEEECTTCHHHHHTTCCTTEE
T ss_pred             HHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhh--hhcCCccccCCCCCCC--CCceeCCCchHHHHHHHhcCCeE
Confidence            9999975   34   678 999999999988765544  3222211    01111  0111    489999999988899


Q ss_pred             EEEEeCCCCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccce
Q 038416          151 AIVIINPGNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRL  229 (387)
Q Consensus       151 ~v~l~~p~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~  229 (387)
                      +|++++++||||.+ .+.+++++|.++|+++|+++|+|++|+++...+... ++..+....+++   |+||.++ +|+|+
T Consensus       175 ~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~d~~---s~SK~~~-~g~~~  249 (375)
T 2eh6_A          175 GIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFY-AYQHFNLKPDVI---ALAKGLG-GGVPI  249 (375)
T ss_dssp             EEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGGGTCCCSEE---EECGGGG-TTSCC
T ss_pred             EEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcch-hhhhcCCCCCEE---EEccccc-CCCCe
Confidence            99999999999998 568889999999999999999999999865443222 233333112222   7889987 68999


Q ss_pred             EEEEeeCCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 038416          230 GWLVTSDPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPV  308 (387)
Q Consensus       230 G~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  308 (387)
                      ||+++++        ++++.+.... ..+.+.+++.+.++.++|+..     .+..++++++++.+.+.|++++. . . 
T Consensus       250 G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~L~~~~~-~-~-  313 (375)
T 2eh6_A          250 GAILARE--------EVAQSFTPGSHGSTFGGNPLACRAGTVVVDEV-----EKLLPHVREVGNYFKEKLKELGK-G-K-  313 (375)
T ss_dssp             EEEEEEH--------HHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHTTS-S-E-
T ss_pred             EEEEEcH--------HHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhc-C-C-
Confidence            9999976        5666555421 234456777888777777642     16677888888999999988743 2 2 


Q ss_pred             CCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHH
Q 038416          309 KPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAF  379 (387)
Q Consensus       309 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~  379 (387)
                      .+..|+++|+.++.       +..++...+. ++||.+.++.    .+++|++++  .+++++++++++|+++
T Consensus       314 ~~~~g~~~~~~~~~-------~~~~~~~~l~-~~gi~~~~~~----~~~iRi~~~~~~~~~~i~~~~~~l~~~  374 (375)
T 2eh6_A          314 VKGRGLMLGLELER-------ECKDYVLKAL-EKGLLINCTA----GKVLRFLPPLIIQKEHIDRAISVLREI  374 (375)
T ss_dssp             EEEETTEEEEECSS-------CCHHHHHHHH-HTTEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEEEEEcC-------cHHHHHHHHH-HCCCEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            34567888988863       3456767664 5799998863    689999984  5899999999999875

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.98  E-value=7.4e-31  Score=245.47  Aligned_cols=334  Identities=15%  Similarity=0.071  Sum_probs=233.0

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCC---CcHH--HHH-----HHHHHHhhcCCCCCCCCCEEE
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTL---GVPS--ARR-----GIADYLNRDLPYKLSPEDVYL   78 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~---~~~~--lr~-----~ia~~~~~~~~~~~~~~~i~~   78 (387)
                      .+++.+.|.+      +.++.+.+++.+.+.+....+|+...   |.+.  +++     .+++++      +.+++++++
T Consensus        24 ~~i~~~~~~~------~~~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~------g~~~~~i~~   91 (407)
T 2dkj_A           24 EGLELIASEN------FVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALF------GAAWANVQP   91 (407)
T ss_dssp             TSEECCTTCC------CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH------TCSEEECCC
T ss_pred             cceeeccCCC------CCCHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHh------CCCcceEEe
Confidence            4455555544      23899999999988642233454321   3332  333     555555      234444555


Q ss_pred             cCChHHHHHHHHHhhcCCCCeEEEcCCCCcchH---HHhhccCCCceeeeeccCC-CCCccCChhhHHHhhcc-CceEEE
Q 038416           79 TLGCSQAIEISLSVLARPGANILIPRPGYPLYE---IHAAGSNNNLEARHYDLLP-EKRWEVDLDGVEALADE-NTVAIV  153 (387)
Q Consensus        79 ~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~---~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~~~-~~~~v~  153 (387)
                      ++| ++++..++.+++++||+|+++.|+|+++.   ..+.  ..|.++..+++.. .+++.+|++++++++++ ++++|+
T Consensus        92 ~sG-t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~  168 (407)
T 2dkj_A           92 HSG-SQANMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVN--FSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIV  168 (407)
T ss_dssp             SSH-HHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTS--HHHHHSEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEE
T ss_pred             cch-HHHHHHHHHHhcCCCCEEEEecccccCccchHHHHH--hcCceEEEEecCCCcccCccCHHHHHHHHhhcCCeEEE
Confidence            655 56999999999999999999999998873   3444  4555444444421 23567899999999874 789999


Q ss_pred             EeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccc-cccCCCCCccccccCCCccEEEEecCcccccccccceEEE
Q 038416          154 IINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNH-LAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWL  232 (387)
Q Consensus       154 l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i  232 (387)
                      +++|+||  ...+   +++|.++|+++|+++|+|++|+. +.+.+.....+   .  ...+++.|+||+  ++|.|+||+
T Consensus       169 ~~~p~~~--~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~---~--~~di~~~s~sK~--l~g~~~G~~  236 (407)
T 2dkj_A          169 AGASAYP--RFWD---FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPL---P--YAHVVTSTTHKT--LRGPRGGLI  236 (407)
T ss_dssp             ECCSSCC--SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCT---T--TCSEEEEESSGG--GCCCSCEEE
T ss_pred             EeccccC--CCCC---HHHHHHHHHHcCCEEEEEccccccccccCccCCcc---c--cccEEEEecccc--CCCCCceEE
Confidence            8899997  4555   89999999999999999999997 54444322211   1  135889999996  558889999


Q ss_pred             EeeCCCCcccchhHHHHHHhhhh--ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 038416          233 VTSDPNGILQNSGFVDSIKGCLN--AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKP  310 (387)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  310 (387)
                      ++++       +++++.+.....  ..++++.....++..+++...+.++++..++++++++++.+.|+++ ++.++..+
T Consensus       237 ~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~  308 (407)
T 2dkj_A          237 LSND-------PELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR-GYRIVTGG  308 (407)
T ss_dssp             EESC-------HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGS
T ss_pred             EECC-------HHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC-CceeecCC
Confidence            9972       267777766542  2234444444455566664334667888999999999999999988 77744224


Q ss_pred             CceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCcc------CCCCeEEEEee------CChHhHHHHHHHHHH
Q 038416          311 QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTV------GMKNWLRIAFA------AEPATLEDGLERIKA  378 (387)
Q Consensus       311 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~------~~~~~~Ri~~~------~~~e~~~~~~~~l~~  378 (387)
                      ..++++|+.++...    .+..++...+ .++||.+.+|..+      ..++++|++++      .+++++++++++|++
T Consensus       309 ~~~~~~~~~~~~~~----~~~~~~~~~l-~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~  383 (407)
T 2dkj_A          309 TDNHLFLVDLRPKG----LTGKEAEERL-DAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDR  383 (407)
T ss_dssp             CSSSEEEEECGGGT----CCHHHHHHHH-HHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHH
T ss_pred             CCceEEEEECcccC----CCHHHHHHHH-HHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHH
Confidence            57888898886421    1345565555 6789999998753      23578999994      689999999999999


Q ss_pred             HHHH
Q 038416          379 FCQR  382 (387)
Q Consensus       379 ~~~~  382 (387)
                      ++++
T Consensus       384 ~~~~  387 (407)
T 2dkj_A          384 ALLE  387 (407)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            9877

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.98  E-value=1.6e-31  Score=249.24  Aligned_cols=314  Identities=11%  Similarity=0.130  Sum_probs=221.1

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC------C-CC
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR------P-GA   98 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~------~-g~   98 (387)
                      .++.+.+++.+++.....  ++.. ...++++.+++.+.+.++    .+++++++|+++|+..++.++..      + ++
T Consensus        57 ~~~~v~~a~~~~~~~~~~--~~~~-~~~~~~~~l~~~la~~~g----~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~  129 (397)
T 2ord_A           57 SHPRLVEAIKDQAEKLIH--CSNL-FWNRPQMELAELLSKNTF----GGKVFFANTGTEANEAAIKIARKYGKKKSEKKY  129 (397)
T ss_dssp             TCHHHHHHHHHHHHHCSC--CCTT-SEEHHHHHHHHHHHHTTT----SCEEEEESSHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred             CCHHHHHHHHHHHHhccc--Cccc-cCCHHHHHHHHHHHHhcC----CCeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCc
Confidence            689999999998875311  1110 112344444444444333    57999999999999999998863      5 47


Q ss_pred             eEEEcCCCCcchHH-HhhccCCCce------------eeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccc-c
Q 038416           99 NILIPRPGYPLYEI-HAAGSNNNLE------------ARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGN-V  164 (387)
Q Consensus        99 ~vl~~~p~~~~~~~-~~~~~~~g~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~-~  164 (387)
                      .|++++|+|++... .+.  ..|.+            +..++.       .|+++|++++++++++|++++|+||||. .
T Consensus       130 ~vi~~~~~yh~~~~~~~~--~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~l~~~l~~~~~~v~~~~~~nptG~~~  200 (397)
T 2ord_A          130 RILSAHNSFHGRTLGSLT--ATGQPKYQKPFEPLVPGFEYFEF-------NNVEDLRRKMSEDVCAVFLEPIQGESGIVP  200 (397)
T ss_dssp             EEEEEBTCCCCSSHHHHH--HSBCHHHHGGGCSCCTTEEEECT-------TCHHHHHHHCCTTEEEEEECSEECTTTCEE
T ss_pred             eEEEEcCCcCCCchhhhh--ccCChhhccccCCCCCCeeEecC-------CCHHHHHHHhhcCeEEEEEecccCCCCccc
Confidence            89999999976443 555  55654            444432       2799999999888999999999999999 8


Q ss_pred             CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccch
Q 038416          165 FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNS  244 (387)
Q Consensus       165 ~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~  244 (387)
                      ++.+++++|+++|+++|+++|+||+|+++.+.+.. .++..++...++   .|+||.++ +|+|+||+++++        
T Consensus       201 ~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~~~~~~~d~---~s~sK~~~-~G~r~G~~~~~~--------  267 (397)
T 2ord_A          201 ATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKL-FAYQKYGVVPDV---LTTAKGLG-GGVPIGAVIVNE--------  267 (397)
T ss_dssp             CCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-SHHHHHTCCCSE---EEECGGGG-TTSCCEEEEECS--------
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEEecccCCccCccc-hhhhhhCCCCCe---eeeccccC-CCcCeEEEEEch--------
Confidence            99999999999999999999999999987665542 222222211122   27899987 899999999976        


Q ss_pred             hHHHHHHhh-hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCC-CCCCceEEEEEecC
Q 038416          245 GFVDSIKGC-LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIP-CITCP-VKPQGAMFVMVKLN  321 (387)
Q Consensus       245 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~-~~~~~g~~~~~~~~  321 (387)
                      +++ .+... ...+++++++.+.++.++|+...+   ++..++++++++++.+.|++++ ++..+ ..+..|.++++.++
T Consensus       268 ~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~  343 (397)
T 2ord_A          268 RAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFR  343 (397)
T ss_dssp             TTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEC
T ss_pred             Hhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEEEeEEEEEEEC
Confidence            333 34322 123456788888888888765332   3456777777888887777642 22211 02334667788775


Q ss_pred             cccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHHHH
Q 038416          322 VSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       322 ~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~  382 (387)
                      ..     .+..++...+++ +||.+.||.    ++++|+++  ..+++++++++++|++++++
T Consensus       344 ~~-----~~~~~l~~~l~~-~gi~v~~~~----~~~iRis~~~~~~~e~i~~~~~~l~~~l~~  396 (397)
T 2ord_A          344 EE-----VSNREVATKCFE-NKLLVVPAG----NNTIRFLPPLTVEYGEIDLAVETLKKVLQG  396 (397)
T ss_dssp             TT-----SCHHHHHHHHHH-TTEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             Ch-----HHHHHHHHHHHH-CCCEEccCC----CCEEEEECCcCCCHHHHHHHHHHHHHHHhh
Confidence            31     135667777654 799999873    67999997  46899999999999988764

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.98  E-value=5.7e-31  Score=240.99  Aligned_cols=314  Identities=15%  Similarity=0.142  Sum_probs=216.0

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcC
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPR  104 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~  104 (387)
                      .+++.+++++.+.....  ..|.+..+..+||+.++++++        .+++++++|+++++..++.+++++||+|+++.
T Consensus        15 ~p~~~~~~a~~~~~~~~--~~y~~~~~~~~l~~~la~~~g--------~~~~~~~~~gt~a~~~~~~~~~~~gd~Vl~~~   84 (347)
T 1jg8_A           15 KPTEEMRKAMAQAEVGD--DVYGEDPTINELERLAAETFG--------KEAALFVPSGTMGNQVSIMAHTQRGDEVILEA   84 (347)
T ss_dssp             CCCHHHHHHHHTCCCCC--GGGTCCHHHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHHCCTTCEEEEET
T ss_pred             CCCHHHHHHHhcCCCCC--cccCCChHHHHHHHHHHHHhC--------CceEEEecCcHHHHHHHHHHhcCCCCEEEEcC
Confidence            46688888887654322  246555678899999999983        24678888889999999999999999999999


Q ss_pred             CCCcchHH---HhhccCCCceeeeeccCCCCCccCChhhHHHhhcc------CceEEEEeCCCCCc-cccCCHHHHHHHH
Q 038416          105 PGYPLYEI---HAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE------NTVAIVIINPGNPC-GNVFSYQHLQKIA  174 (387)
Q Consensus       105 p~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~npt-G~~~~~~~~~~l~  174 (387)
                      |+|.....   .+.  ..|.+++.+ ..  .++.+|++++++++++      ++++|++++|+||| |.++|.+++++|+
T Consensus        85 ~~~~~~~~~~~~~~--~~g~~~~~v-~~--~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~  159 (347)
T 1jg8_A           85 DSHIFWYEVGAMAV--LSGVMPHPV-PG--KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEIC  159 (347)
T ss_dssp             TCHHHHSSTTHHHH--HTCCEEEEE-CE--ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHH
T ss_pred             cchhhhccccchhh--ccCeEEEEe-cC--CCCccCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHH
Confidence            99975332   456  678888877 32  2345799999999875      58999999999999 9999999999999


Q ss_pred             HHHHhcCcEEeeccccccc--ccCCCCCccccccCCCccEEEEecCcccccccccceEE-EEeeCCCCcccchhHHHHHH
Q 038416          175 RTARNLGIIVIADEVYNHL--AFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGW-LVTSDPNGILQNSGFVDSIK  251 (387)
Q Consensus       175 ~~~~~~~~~li~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~-i~~~~~~~~~~~~~~~~~~~  251 (387)
                      ++|+++|+++|+|++|...  .+.+....++.. .. +  .++.|+||+++++   +|+ ++.++        ++++++.
T Consensus       160 ~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~-~~-d--~~~~s~sK~l~~~---~G~~~~~~~--------~~~~~~~  224 (347)
T 1jg8_A          160 TIAKEHGINVHIDGARIFNASIASGVPVKEYAG-YA-D--SVMFCLSKGLCAP---VGSVVVGDR--------DFIERAR  224 (347)
T ss_dssp             HHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHH-TC-S--EEEEESSSTTCCS---SCEEEEECH--------HHHHHHH
T ss_pred             HHHHHCCCEEEeehhhhhcchhhcCCChHHhcc-cc-c--EEEEecccccCCC---ceEEEEcCH--------HHHHHHH
Confidence            9999999999999987531  112222221111 11 1  3345899997643   575 44443        5777665


Q ss_pred             hhhh-ccC--CcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCC
Q 038416          252 GCLN-AAS--HPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDI  328 (387)
Q Consensus       252 ~~~~-~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  328 (387)
                      ..+. ...  ..+...+.+....++...+ .+    ++..++++.+.+.|+++ ++.+...+..++++|++++...    
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~----~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~----  294 (347)
T 1jg8_A          225 KARKMLGGGMRQAGVLAAAGIIALTKMVD-RL----KEDHENARFLALKLKEI-GYSVNPEDVKTNMVILRTDNLK----  294 (347)
T ss_dssp             HHHHHHTCCCSSTHHHHHHHHHHHHHSST-TH----HHHHHHHHHHHHHHHHH-TCBCCGGGCCSSEEEEECTTSS----
T ss_pred             HHHHHcCCchhHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHhc-CceeccCCCcceEEEEEccccc----
Confidence            5432 222  2233344444444443211 12    22334567777888777 6653223445667888876311    


Q ss_pred             CcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHh
Q 038416          329 GDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       329 ~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                      .+..++...+. ++||.+.++.    .+++|++++  .+++++++++++|+++++++
T Consensus       295 ~~~~~~~~~l~-~~gi~v~~~~----~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~~  346 (347)
T 1jg8_A          295 VNAHGFIEALR-NSGVLANAVS----DTEIRLVTHKDVSRNDIEEALNIFEKLFRKF  346 (347)
T ss_dssp             SCHHHHHHHHH-HHTEECEEEE----TTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHH-HCCCEEecCC----CCeEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence            14567777774 5699998753    578999985  48999999999999988653

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.97  E-value=2.6e-30  Score=243.48  Aligned_cols=339  Identities=15%  Similarity=0.105  Sum_probs=225.7

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCC---CCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHY---NCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQA   85 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~---~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a   85 (387)
                      .+.+.+.+.+..+.++ .+|.+.+++.+++.....   ..|+. ....++++.+++++      +.++++|++|+|+++|
T Consensus        44 ~ylD~~~~~~~~~lg~-~~p~v~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~~------~~~~~~v~~~~ggtea  115 (429)
T 1s0a_A           44 RLVDGMSSWWAAIHGY-NHPQLNAAMKSQIDAMSHVMFGGITH-APAIELCRKLVAMT------PQPLECVFLADSGSVA  115 (429)
T ss_dssp             EEEESSTTTTTCTTCB-SCHHHHHHHHHHHHHCSCCCCSSEEC-HHHHHHHHHHHHHS------CTTCCEEEEESSHHHH
T ss_pred             EEEEcCccHhhccCCC-CCHHHHHHHHHHHHhcccccccccCC-HHHHHHHHHHHHhC------CCCCCEEEEeCCHHHH
Confidence            3445544433222232 589999999999875321   12322 22355666666665      3577899999999999


Q ss_pred             HHHHHHhhc---C----CCCeEEEcCCCCcchHHHhhccCCC-------------ceeeeeccCC---CCCc-cCChhhH
Q 038416           86 IEISLSVLA---R----PGANILIPRPGYPLYEIHAAGSNNN-------------LEARHYDLLP---EKRW-EVDLDGV  141 (387)
Q Consensus        86 ~~~~~~~l~---~----~g~~vl~~~p~~~~~~~~~~~~~~g-------------~~~~~~~~~~---~~~~-~~~~~~l  141 (387)
                      +..+++++.   +    +|++|+++.|+|+++..... +..+             .++..++.+.   +..+ ..|+++|
T Consensus       116 ~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l  194 (429)
T 1s0a_A          116 VEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAM-SVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGF  194 (429)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHH-TTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHH
T ss_pred             HHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhh-hhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHH
Confidence            999998753   2    58999999999987644332 0111             1234444421   1123 4789999


Q ss_pred             HHhhcc--CceEEEEeCC--CCCccc-cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEe
Q 038416          142 EALADE--NTVAIVIINP--GNPCGN-VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLG  216 (387)
Q Consensus       142 ~~~~~~--~~~~v~l~~p--~nptG~-~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  216 (387)
                      ++++++  ....+++++|  +||||. .++.+++++|.++|++||+++|+||+|+++...+... .+.......+   +.
T Consensus       195 ~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~-~~~~~~~~~d---~~  270 (429)
T 1s0a_A          195 ARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF-ACEHAEIAPD---IL  270 (429)
T ss_dssp             HHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGGGTCCCS---EE
T ss_pred             HHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHH-HhhhcCCCCC---EE
Confidence            998863  2334455666  589996 5678889999999999999999999999876544321 2221221122   23


Q ss_pred             cCcccccccc-cceEEEEeeCCCCcccchhHHHHHHhh------hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHH
Q 038416          217 SISKRWIVPG-WRLGWLVTSDPNGILQNSGFVDSIKGC------LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKE  289 (387)
Q Consensus       217 s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  289 (387)
                      |+||.++ +| +|+||+++++        ++++.+...      ...+++++++++.++.++++...+   .+..+++++
T Consensus       271 t~sK~l~-~G~~~iG~~~~~~--------~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~---~~~~~~~~~  338 (429)
T 1s0a_A          271 CLGKALT-GGTMTLSATLTTR--------EVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILES---GDWQQQVAD  338 (429)
T ss_dssp             EECGGGG-TSSSCCEEEEECH--------HHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHT---CHHHHHHHH
T ss_pred             Eeccccc-CCCccceEEEeCH--------HHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHh---CCHHHHHHH
Confidence            7899976 58 9999999875        677777653      123456788888888888764222   234566677


Q ss_pred             HHHHHHHHhhcC---CCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eC
Q 038416          290 TADICYERIKEI---PCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AA  364 (387)
Q Consensus       290 ~~~~~~~~l~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~  364 (387)
                      +++++.+.|+++   |++. . .+..|.++|+.++..     .+..++...++ ++||.+.+.     .+++||++  ..
T Consensus       339 ~~~~l~~~L~~l~~~~~~~-~-~~~~g~~~~~~~~~~-----~~~~~l~~~l~-~~Gi~v~~~-----~~~iRis~~~~~  405 (429)
T 1s0a_A          339 IEVQLREQLAPARDAEMVA-D-VRVLGAIGVVETTHP-----VNMAALQKFFV-EQGVWIRPF-----GKLIYLMPPYII  405 (429)
T ss_dssp             HHHHHHHHHGGGGGCTTEE-E-EEEETTEEEEEESSC-----BCHHHHHHHHH-HTTEECCCB-----TTEEEECCCTTC
T ss_pred             HHHHHHHHHHHHhcCCCEE-E-EEEeeEEEEEEECCc-----ccHHHHHHHHH-HCCCEEecc-----CCEEEEECCCCC
Confidence            788888888765   4443 1 223456788887531     14556766665 679999874     37899997  46


Q ss_pred             ChHhHHHHHHHHHHHHHHhhh
Q 038416          365 EPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       365 ~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      +++++++++++|++++++++.
T Consensus       406 t~e~i~~~~~~l~~~~~~~~~  426 (429)
T 1s0a_A          406 LPQQLQRLTAAVNRAVQDETF  426 (429)
T ss_dssp             CHHHHHHHHHHHHHHTSSGGG
T ss_pred             CHHHHHHHHHHHHHHHHhhhc
Confidence            899999999999998876553

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.97  E-value=6.2e-30  Score=238.43  Aligned_cols=313  Identities=16%  Similarity=0.136  Sum_probs=216.6

Q ss_pred             CCCCCCCCCCCCCCCcHHHHHHHHHHhc---C-CCCCCCC--CCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHH
Q 038416           12 SPWPRRPLGVSLLSDSTVAEDAVVDALR---T-AHYNCYS--PTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQA   85 (387)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~v~~a~~~~~~---~-~~~~~y~--~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a   85 (387)
                      ..|.+.|    +++.++.+.+++.++..   + .....|+  ......++++.++++++      .  ++.+++++++++
T Consensus        24 ~~~~~~~----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g------~--~~~i~~~sG~~a   91 (398)
T 2rfv_A           24 TGALSTP----IFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLER------G--EAGLATASGISA   91 (398)
T ss_dssp             TCCSSCC----CCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHT------C--SEEEEESSHHHH
T ss_pred             CCCcCCC----CcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhC------C--CcEEEECCHHHH
Confidence            4556555    77777777666666554   1 1122333  23456778888888772      2  256666667799


Q ss_pred             HHHHHHhhcCCCCeEEEcCCCCcchHHHh----hccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCc
Q 038416           86 IEISLSVLARPGANILIPRPGYPLYEIHA----AGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPC  161 (387)
Q Consensus        86 ~~~~~~~l~~~g~~vl~~~p~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~npt  161 (387)
                      +..++.+++++||+|+++.|+|+++...+    .  ..|.++..++..       |++++++++++++++|++++|+|||
T Consensus        92 ~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~--~~g~~~~~v~~~-------d~~~l~~~i~~~~~~v~~~~~~npt  162 (398)
T 2rfv_A           92 ITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMP--KFGINVRFVDAA-------KPEEIRAAMRPETKVVYIETPANPT  162 (398)
T ss_dssp             HHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHH--HTTCEEEEECTT-------SHHHHHHHCCTTEEEEEEESSBTTT
T ss_pred             HHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHH--HcCCEEEEeCCC-------CHHHHHHhcCCCCeEEEEECCCCCC
Confidence            99999999999999999999999887765    6  789998888752       7899999998899999999999999


Q ss_pred             cccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccce-EEEEeeCCCCc
Q 038416          162 GNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRL-GWLVTSDPNGI  240 (387)
Q Consensus       162 G~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~-G~i~~~~~~~~  240 (387)
                      |.+++   +++|.++|+++|+++|+|++|+.+.+..    ++ .+   +..+++.|+||+++.+|.|+ ||+++++    
T Consensus       163 G~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~----~~-~~---~~di~~~s~sK~~~~~g~~~~G~~~~~~----  227 (398)
T 2rfv_A          163 LSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQ----PL-QL---GADIVVHSVTKYINGHGDVIGGIIVGKQ----  227 (398)
T ss_dssp             TBCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC----GG-GG---TCSEEEEETTTTTTCSSCCCCEEEEECH----
T ss_pred             CcccC---HHHHHHHHHHcCCEEEEECCCcccccCC----ch-hh---CCcEEEEeCcccccCCCCceEEEEEECH----
Confidence            99997   8999999999999999999999755421    22 22   24588999999999999998 9999875    


Q ss_pred             ccchhHHH-HHHhhhh-c-cCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCC--------------C
Q 038416          241 LQNSGFVD-SIKGCLN-A-ASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIP--------------C  303 (387)
Q Consensus       241 ~~~~~~~~-~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------------~  303 (387)
                          ++++ .++.... . +.+.+++.++++...++.     +..+.++..++++.+.+.|++.+              +
T Consensus       228 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~  298 (398)
T 2rfv_A          228 ----EFIDQARFVGLKDITGGCMSPFNAWLTLRGVKT-----LGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQ  298 (398)
T ss_dssp             ----HHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTT
T ss_pred             ----HHHHHHHHHHHHhCCCCCCCHHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcc
Confidence                5665 4554433 3 457788888888887764     23334445556666666666532              2


Q ss_pred             CCCCCCC---CceEEEEEecCcccccCCCcHHHHHHHHHHh---cCeEEEcCCccC----------------------C-
Q 038416          304 ITCPVKP---QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKE---ESVIILPGRTVG----------------------M-  354 (387)
Q Consensus       304 ~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~---~gi~v~~g~~~~----------------------~-  354 (387)
                      +.+. .|   ..+.++++.++.        .......++++   .|+.+.+|..+.                      . 
T Consensus       299 ~~~~-~~~~~~~g~~~~~~~~~--------~~~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~  369 (398)
T 2rfv_A          299 YELG-QRQMSLPGGIISFEIAG--------GLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGIT  369 (398)
T ss_dssp             HHHH-HHHCSSCCSEEEEEETT--------HHHHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCC
T ss_pred             HHHH-HhhCCCCceEEEEEEcC--------CHHHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCC
Confidence            2211 11   235566667752        11222333333   377777775431                      1 


Q ss_pred             CCeEEEEeeC--ChHhHHHHHHHHHH
Q 038416          355 KNWLRIAFAA--EPATLEDGLERIKA  378 (387)
Q Consensus       355 ~~~~Ri~~~~--~~e~~~~~~~~l~~  378 (387)
                      ++.+|+|++.  ++++++++.+.|++
T Consensus       370 ~~~iRls~~~~~~~~~i~~l~~al~~  395 (398)
T 2rfv_A          370 DGLIRLSVGLEDPEDIINDLEHAIRK  395 (398)
T ss_dssp             TTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEecCCCHHHHHHHHHHHHHh
Confidence            5799999975  45666666666544

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.97  E-value=1.2e-30  Score=245.71  Aligned_cols=337  Identities=14%  Similarity=0.089  Sum_probs=212.7

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC--------CC
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR--------PG   97 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--------~g   97 (387)
                      .+|.+.+++.+++...  .+|....+..++++++++++.+.++  .+.++|++|+|+++++..+++.+++        ++
T Consensus        46 ~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~  121 (430)
T 3i4j_A           46 GRAEVGERMAAQAARL--PFVHGSQFSSDVLEEYAGRLARFVG--LPTFRFWAVSGGSEATESAVKLARQYHVERGEPGR  121 (430)
T ss_dssp             CCHHHHHHHHHHHHHC--CCCCTTTCEEHHHHHHHHHHHHHTT--CTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTC
T ss_pred             CCHHHHHHHHHHHHhc--ccccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            3899999999988753  2333334455667777777766554  4567999999999999999998863        46


Q ss_pred             CeEEEcCCCCcchHHHhhccCCCc---------------eeeeeccCCCC-CccCChhhHHHhhcc---CceEEEEeCC-
Q 038416           98 ANILIPRPGYPLYEIHAAGSNNNL---------------EARHYDLLPEK-RWEVDLDGVEALADE---NTVAIVIINP-  157 (387)
Q Consensus        98 ~~vl~~~p~~~~~~~~~~~~~~g~---------------~~~~~~~~~~~-~~~~~~~~l~~~~~~---~~~~v~l~~p-  157 (387)
                      +.|++.+|+|+++...+.  ..+.               ++..++.+... ....|+++|+++++.   ++.++++++| 
T Consensus       122 ~~vi~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~  199 (430)
T 3i4j_A          122 FKVITRVPSYHGASLGSL--AASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPV  199 (430)
T ss_dssp             CEEEEETTC---------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSS
T ss_pred             cEEEEEeCCcCCCCcccc--cccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCc
Confidence            899999999998765544  3332               22223221100 012356888888862   4455566666 


Q ss_pred             CC-Cccc-cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcccccc-CCCccEEEEecCcccccccc-cceEEEE
Q 038416          158 GN-PCGN-VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF-GSIVPVITLGSISKRWIVPG-WRLGWLV  233 (387)
Q Consensus       158 ~n-ptG~-~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~s~sK~~~~~g-~r~G~i~  233 (387)
                      +| ++|. .++.+++++|.++|++||+++|+||+|.++.+.+... .+..+ ....+   +.++||+++ +| +|+||++
T Consensus       200 ~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~-~~~~~~~~~~d---i~t~sK~l~-~G~~r~G~~~  274 (430)
T 3i4j_A          200 VGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPL-ALSRWSGVTPD---IAVLGKGLA-AGYAPLAGLL  274 (430)
T ss_dssp             CCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGGTTTCCCS---EEEECGGGT-TTSSCCEEEE
T ss_pred             ccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchh-hhhhhcCCCCc---EEEEccccc-CCccccEEEE
Confidence            66 8887 5678889999999999999999999999887665422 22222 21112   336899987 49 9999999


Q ss_pred             eeCCCCcccchhHHHHHHhh-----hhccCCcchHHHHHHHHHhhhccH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 038416          234 TSDPNGILQNSGFVDSIKGC-----LNAASHPVTFIQAAVPRIVDETNE-AFFAKIIGLLKETADICYERIKEIPCITCP  307 (387)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  307 (387)
                      +++        ++++.+...     ...+++.+++++.++.++|+...+ ...++..+.....++.+.+.++.+|.+..+
T Consensus       275 ~~~--------~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  346 (430)
T 3i4j_A          275 AAP--------QVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQV  346 (430)
T ss_dssp             ECH--------HHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred             ECH--------HHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence            976        788888763     234567889999998888875332 233444444444555555555456655522


Q ss_pred             CCCCceEEEEEecCcccccC----CCcHHHHHHHHHHhcCeEEEcCCccC---CCCeEEEEee--CChHhHHHHHHHHHH
Q 038416          308 VKPQGAMFVMVKLNVSMLED----IGDDLEFCLKLAKEESVIILPGRTVG---MKNWLRIAFA--AEPATLEDGLERIKA  378 (387)
Q Consensus       308 ~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~ll~~~gi~v~~g~~~~---~~~~~Ri~~~--~~~e~~~~~~~~l~~  378 (387)
                        +..|.|+++.+.......    .....++...+ .++||.+.|+..+.   .++++||+++  .+++++++++++|++
T Consensus       347 --~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~  423 (430)
T 3i4j_A          347 --RGTGLLLGVVLGDLATGQAFETPGIASRIGAAA-LKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLAG  423 (430)
T ss_dssp             --EEETTEEEEEEC------------CHHHHHHHH-HHTTEECC-----------CEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             --EEEEEEEEEEeccccccCCCccHHHHHHHHHHH-HhCCCEEEecccccCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence              334667777764210000    00124566665 46799999873221   1578999996  689999999999999


Q ss_pred             HHHHhh
Q 038416          379 FCQRHA  384 (387)
Q Consensus       379 ~~~~~~  384 (387)
                      +++++.
T Consensus       424 ~l~~~~  429 (430)
T 3i4j_A          424 ALEDVL  429 (430)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            998754

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.97  E-value=9.2e-31  Score=242.94  Aligned_cols=320  Identities=14%  Similarity=0.107  Sum_probs=230.3

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCCC--CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc---CCCC
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSPT--LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA---RPGA   98 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~~--~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~---~~g~   98 (387)
                      .++++.+.+++.+....    ++.+.  ....++++.++++++...  ++++++|++|+|+++++..++.++.   ++||
T Consensus        14 ~~~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd   87 (385)
T 2bkw_A           14 IILSGAVQKALDVPSLG----HTSPEFVSIFQRVLKNTRAVFKSAA--ASKSQPFVLAGSGTLGWDIFASNFILSKAPNK   87 (385)
T ss_dssp             CCCCHHHHHTTSCCCCC----TTSHHHHHHHHHHHHHHHHHTTCCG--GGTCEEEEEESCTTHHHHHHHHHHSCTTCSCC
T ss_pred             cCchHHHHHHHhccccc----cCCHHHHHHHHHHHHHHHHHhCCCC--CCCCceEEEcCchHHHHHHHHHHHhccCCCCC
Confidence            46778888877665432    22221  135677888888886532  2456899999999999999999997   8999


Q ss_pred             eEEEcC-CCCcch-HHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCccccCCHHHHHHHHH
Q 038416           99 NILIPR-PGYPLY-EIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCGNVFSYQHLQKIAR  175 (387)
Q Consensus        99 ~vl~~~-p~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~~~~l~~  175 (387)
                      +|+++. +.|+.+ ...+.  ..|.+++.+++. ..++.+|+++|++++++ ++++|++++|+||||.+++   +++|.+
T Consensus        88 ~vlv~~~~~~~~~~~~~~~--~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~---l~~i~~  161 (385)
T 2bkw_A           88 NVLVVSTGTFSDRFADCLR--SYGAQVDVVRPL-KIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSD---LKAISQ  161 (385)
T ss_dssp             EEEEECSSHHHHHHHHHHH--HTTCEEEEECCS-STTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC---HHHHHH
T ss_pred             eEEEEcCCcchHHHHHHHH--HcCCceEEEecC-CCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcC---HHHHHH
Confidence            998874 455544 35667  789999998872 23456899999999977 7899999999999999988   778999


Q ss_pred             HHHhc--CcEEeecccccccccCCCCCccccccCCCccEEEEecCccccc-ccccceEEEEeeCCCCcccchhHHH-HHH
Q 038416          176 TARNL--GIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWI-VPGWRLGWLVTSDPNGILQNSGFVD-SIK  251 (387)
Q Consensus       176 ~~~~~--~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~-~~g~r~G~i~~~~~~~~~~~~~~~~-~~~  251 (387)
                      +|+++  |+++|+|++|+...    ...++..+   +..+++.|+||+++ ++|  +||+++++        +.++ .++
T Consensus       162 ~~~~~~~~~~li~D~a~~~~~----~~~~~~~~---~~d~~~~s~~K~~~~~~G--~G~~~~~~--------~~~~~~l~  224 (385)
T 2bkw_A          162 AIKQTSPETFFVVDAVCSIGC----EEFEFDEW---GVDFALTASQKAIGAPAG--LSISLCSS--------RFMDYALN  224 (385)
T ss_dssp             HHHHHCTTSEEEEECTTTTTT----SCCCTTTT---TCSEEEEESSSTTCCCSC--EEEEEECH--------HHHHHHTC
T ss_pred             HHHhhCCCCEEEEECccccCC----cccccccc---CceEEEecCccccccCCc--ceEEEEcH--------HHHHHHHh
Confidence            99999  99999999998421    11123222   23478899999654 566  59999875        4444 321


Q ss_pred             ----------------------hhhh----ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHh-hcCCCC
Q 038416          252 ----------------------GCLN----AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERI-KEIPCI  304 (387)
Q Consensus       252 ----------------------~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~  304 (387)
                                            ....    ..++++...+.++..+++...+..+++..++++++++++.+.| +++ ++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~  303 (385)
T 2bkw_A          225 DSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL-QL  303 (385)
T ss_dssp             HHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT-CC
T ss_pred             hccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc-Cc
Confidence                                  1111    0135666777777777765333347778888999999999999 888 77


Q ss_pred             CCCCCC-----CceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccC-CCCeEEEE-ee-----CChHhHHHH
Q 038416          305 TCPVKP-----QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG-MKNWLRIA-FA-----AEPATLEDG  372 (387)
Q Consensus       305 ~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~-~~~~~Ri~-~~-----~~~e~~~~~  372 (387)
                      .++ .+     ..++++++.++        +..++...+ .++||.+.+|..+. ..+++||+ ++     .++++++++
T Consensus       304 ~~~-~~~~~~~~~~~~~~~~~~--------~~~~~~~~l-~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~  373 (385)
T 2bkw_A          304 TSV-SRYPSNMSAHGLTAVYVA--------DPPDVIAFL-KSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNC  373 (385)
T ss_dssp             EES-SCSSSTTBCSSCEEEECS--------CHHHHHHHH-HHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHH
T ss_pred             eec-ccCcccccCCceEEEecC--------CHHHHHHHH-HHCCeEEeCCCCcccCCCEEEEEccccccccCCHHHHHHH
Confidence            644 32     24677888775        245666666 56799999987643 25789999 65     488999999


Q ss_pred             HHHHHHHHHHh
Q 038416          373 LERIKAFCQRH  383 (387)
Q Consensus       373 ~~~l~~~~~~~  383 (387)
                      +++|+++++++
T Consensus       374 ~~~l~~~~~~~  384 (385)
T 2bkw_A          374 FDLIKLALQRK  384 (385)
T ss_dssp             HHHHHHHTTC-
T ss_pred             HHHHHHHHHhc
Confidence            99999887543

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.97  E-value=2.4e-30  Score=240.89  Aligned_cols=308  Identities=16%  Similarity=0.148  Sum_probs=223.5

Q ss_pred             CcHHHHHHHHHHhcCCCC-CCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCC--------
Q 038416           26 DSTVAEDAVVDALRTAHY-NCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARP--------   96 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~-~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~--------   96 (387)
                      .+|.+.+++.+.+..... ..+.......++++.+++++        ..+++++++|+++|+..++..+..+        
T Consensus        53 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~--------g~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~  124 (392)
T 3ruy_A           53 RHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLT--------NKEMVLPMNTGAEAVETAIKTARRWAYDVKKVE  124 (392)
T ss_dssp             TCHHHHHHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             CCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhc--------CCCEEEEeCcHHHHHHHHHHHHHHhhhhccCCC
Confidence            589999999998875321 11112345677888888877        3679999999999999999987643        


Q ss_pred             --CCeEEEcCCCCcchHHHhhccCCCce-------------eeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCc
Q 038416           97 --GANILIPRPGYPLYEIHAAGSNNNLE-------------ARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPC  161 (387)
Q Consensus        97 --g~~vl~~~p~~~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~npt  161 (387)
                        +|+|+++.|+|+++...+.  ..+..             +..++.       .|+++|++++++++++|++++|+|||
T Consensus       125 ~~~~~vi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~~~~v~~~~~~npt  195 (392)
T 3ruy_A          125 ANRAEIIVCEDNFHGRTMGAV--SMSSNEEYKRGFGPMLPGIIVIPY-------GDLEALKAAITPNTAAFILEPIQGEA  195 (392)
T ss_dssp             TTCCEEEEETTCCCCSSHHHH--HTCSCTTTTTTCCSCCSSEEEECT-------TCHHHHHHHCCTTEEEEEECSSBSTT
T ss_pred             CCCcEEEEEcCCcCCCCHhhh--hccCChhhccccCCCCCCCeeeCc-------ccHHHHHHHhccCeEEEEEeCccCCC
Confidence              6799999999987654443  22211             222221       27999999999899999999999999


Q ss_pred             cccCCHHH-HHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccc-cceEEEEeeCCCC
Q 038416          162 GNVFSYQH-LQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPG-WRLGWLVTSDPNG  239 (387)
Q Consensus       162 G~~~~~~~-~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~  239 (387)
                      |.+++.++ +++|.++|++||+++|+||+|+++.+.+.... ........++   .++||.++ +| +|+||+++++   
T Consensus       196 G~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~-~~~~~~~~d~---~~~SK~l~-gG~~~~G~~~~~~---  267 (392)
T 3ruy_A          196 GINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFA-CDWDNVTPDM---YILGKALG-GGVFPISCAAANR---  267 (392)
T ss_dssp             TSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSG-GGGGTCCCSE---EEECGGGG-TTTSCCEEEEECH---
T ss_pred             CCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchh-hhccCCCCCE---EEEchhhh-CChhhhEEEEECH---
Confidence            99996555 99999999999999999999998776654332 2222221222   36789843 36 9999999975   


Q ss_pred             cccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCCCCCCCceEEE
Q 038416          240 ILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEI--PCITCPVKPQGAMFV  316 (387)
Q Consensus       240 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~g~~~  316 (387)
                           ++++.+..... .+++++++.+.++..+++...+   ++..++++++++++.+.|+++  +.+. . .+..|.++
T Consensus       268 -----~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~-~-~~~~g~~~  337 (392)
T 3ruy_A          268 -----DILGVFEPGSHGSTFGGNPLACAVSIAALEVLEE---EKLTERSLQLGEKLVGQLKEIDNPMIT-E-VRGKGLFI  337 (392)
T ss_dssp             -----HHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTTCCCTTEE-E-EEEETTEE
T ss_pred             -----HHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHhcCCCce-E-EEeeeeEE
Confidence                 66666655432 4567888899998888875322   567788888999999999886  2233 2 22335566


Q ss_pred             EEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHH
Q 038416          317 MVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFC  380 (387)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~  380 (387)
                      ++.++.       +..++...+ .++||.+.||.    .+++|+++  ..+++++++++++|++++
T Consensus       338 ~~~~~~-------~~~~l~~~l-~~~gi~v~~~~----~~~iRi~~~~~~~~~~i~~~~~~l~~~l  391 (392)
T 3ruy_A          338 GIELNE-------PARPYCEQL-KAAGLLCKETH----ENVIRIAPPLVISEEDLEWAFQKIKAVL  391 (392)
T ss_dssp             EEEESS-------CSHHHHHHH-HTTTEECCCBT----TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             EEEEcc-------hHHHHHHHH-HHCCcEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            666653       345676766 46799999875    68999996  468999999999998875

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.97  E-value=5.7e-30  Score=240.27  Aligned_cols=321  Identities=13%  Similarity=0.134  Sum_probs=214.2

Q ss_pred             cHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC-CCCeEEEcCC
Q 038416           27 STVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR-PGANILIPRP  105 (387)
Q Consensus        27 ~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-~g~~vl~~~p  105 (387)
                      +|.+.+++.+++....  .|+...+..+++..+++.+.+.++... +++|++|+|+++++..+++.+.. +|++|++++|
T Consensus        61 ~p~v~~a~~~~~~~~~--~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~v~~~~gg~ea~~~ai~~~~~~~~~~vi~~~p  137 (419)
T 2eo5_A           61 HPEVIKIGIEQMQKLA--HAAANDFYNIPQLELAKKLVTYSPGNF-QKKVFFSNSGTEAIEASIKVVKNTGRKYIIAFLG  137 (419)
T ss_dssp             CHHHHHHHHHHHTTSC--CCSCSCSCCHHHHHHHHHHHHHSSCSS-CEEEEEESSHHHHHHHHHHHHHTTSCCEEEEETT
T ss_pred             CHHHHHHHHHHHhhCc--cccccccCCHHHHHHHHHHHHhCCCCc-CCEEEEeCchHHHHHHHHHHHHHhhCCcEEEECC
Confidence            7999999999987532  222111222334444444444444222 68999999999999999987653 4899999999


Q ss_pred             CCcchHHHhh-cc------C-----CCceeeeeccCCCC--Ccc------------CChhhHH-Hhhcc----CceEEEE
Q 038416          106 GYPLYEIHAA-GS------N-----NNLEARHYDLLPEK--RWE------------VDLDGVE-ALADE----NTVAIVI  154 (387)
Q Consensus       106 ~~~~~~~~~~-~~------~-----~g~~~~~~~~~~~~--~~~------------~~~~~l~-~~~~~----~~~~v~l  154 (387)
                      +|+++..... ..      .     ...++..++.+...  +++            +|+++|+ +++++    ....+++
T Consensus       138 ~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi  217 (419)
T 2eo5_A          138 GFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIF  217 (419)
T ss_dssp             CCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEE
T ss_pred             CcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEE
Confidence            9986443221 00      0     11245566653211  112            3678998 88763    2345666


Q ss_pred             eCCC-CCccc-cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccc-cceEE
Q 038416          155 INPG-NPCGN-VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPG-WRLGW  231 (387)
Q Consensus       155 ~~p~-nptG~-~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g-~r~G~  231 (387)
                      ++|+ ||||. .++.+++++|.++|++||+++|+||+|.++.+.+... .+.......+   +.|+||.++. | +|+||
T Consensus       218 ~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~-~~~~~~~~~d---~~t~sK~~~~-G~~riG~  292 (419)
T 2eo5_A          218 FEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLF-AIENFNTVPD---VITLAKALGG-GIMPIGA  292 (419)
T ss_dssp             ECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGGGTCCCS---EEEECGGGGT-TTSCCEE
T ss_pred             EeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchh-hHHhcCCCCC---EEEecccccC-CccceEE
Confidence            7775 57896 6688889999999999999999999999876655321 1222222222   2379999874 9 99999


Q ss_pred             EEeeCCCCcccchhHHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 038416          232 LVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ  311 (387)
Q Consensus       232 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  311 (387)
                      +++++        +++ .+......+++.+++++.++.++++..     .+..++++++++++.+.|+++  +. . .+.
T Consensus       293 ~~~~~--------~~~-~~~~~~~~t~~~n~~~~~aa~aal~~~-----~~~~~~~~~~~~~l~~~L~~~--~~-~-~~~  354 (419)
T 2eo5_A          293 TIFRK--------DLD-FKPGMHSNTFGGNALACAIGSKVIDIV-----KDLLPHVNEIGKIFAEELQGL--AD-D-VRG  354 (419)
T ss_dssp             EEEEG--------GGC-CC------CCCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHTTS--SS-E-EEE
T ss_pred             EEEch--------Hhh-cCCcccCCCCCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHh--hh-h-eEe
Confidence            99976        444 441122345677889999988888752     226788888899999998876  33 2 234


Q ss_pred             ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHHHHh
Q 038416          312 GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       312 ~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      .|+|+++.+....    .... +...++ ++||.+.|+.    .+++||++  ..+++++++++++|+++++++
T Consensus       355 ~g~~~~i~~~~~~----~~~~-~~~~l~-~~Gv~v~~~~----~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~  418 (419)
T 2eo5_A          355 IGLAWGLEYNEKK----VRDR-IIGESF-KRGLLLLPAG----RSAIRVIPPLVISEEEAKQGLDILKKVIKVV  418 (419)
T ss_dssp             ETTEEEEECSCHH----HHHH-HHHHHH-HTTEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             eeEEEEEEEecCc----cHHH-HHHHHH-HCCCEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            5778888873110    0233 556654 6799999864    57999987  468999999999999988764

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.97  E-value=1.9e-31  Score=248.98  Aligned_cols=326  Identities=15%  Similarity=0.082  Sum_probs=213.5

Q ss_pred             CCcHHHHHHHHHHhcCCCCC---CCCC----CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc---
Q 038416           25 SDSTVAEDAVVDALRTAHYN---CYSP----TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA---   94 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~---~y~~----~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~---   94 (387)
                      ++++.+.+++.+.+.....+   .|..    .....++++.+++++      ++++++|++|+|+++++..++.+++   
T Consensus        31 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~------~~~~~~v~~~~g~t~al~~~~~~l~~~~  104 (400)
T 3vax_A           31 RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTV------SAEPDELIFTSGATESNNIALLGLAPYG  104 (400)
T ss_dssp             SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHT------TCCGGGEEEESCHHHHHHHHHHTTHHHH
T ss_pred             CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHc------CCCCCcEEEeCCHHHHHHHHHHHHHHhh
Confidence            67899999999988632100   1111    112456666677666      3567899999999999999999998   


Q ss_pred             -CCCC-eEEEcCCCCcchHHHhh-ccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHH
Q 038416           95 -RPGA-NILIPRPGYPLYEIHAA-GSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQ  171 (387)
Q Consensus        95 -~~g~-~vl~~~p~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~  171 (387)
                       ++|| .|+++.++|+++..... ....|.++..++++.  ++.+|+++|+++++++++++++++|+||||.+++   ++
T Consensus       105 ~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~  179 (400)
T 3vax_A          105 ERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGP--SGRISVEGVMERLRPDTLLVSLMHVNNETGVIQP---VA  179 (400)
T ss_dssp             HHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCT--TCCCCHHHHHTTCCTTEEEEECCSBCTTTCBBCC---HH
T ss_pred             ccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCC--CCCcCHHHHHHhcCCCceEEEEECCCCCceeeCc---HH
Confidence             8999 99999999988654444 114699999998753  5578999999999989999999999999999988   78


Q ss_pred             HHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEE-eeCCCCcccchhHHHHH
Q 038416          172 KIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLV-TSDPNGILQNSGFVDSI  250 (387)
Q Consensus       172 ~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~-~~~~~~~~~~~~~~~~~  250 (387)
                      +|.++|+++|+++|+|++|+...    ....+..+    ..+++.|++|.++.+|  +|+++ +++.........+...+
T Consensus       180 ~i~~la~~~~~~li~D~a~~~~~----~~~~~~~~----~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~  249 (400)
T 3vax_A          180 ELAQQLRATPTYLHVDAAQGYGK----VPGDLTTP----IDMISISGHKIGAPKG--VGALVTRRREEMDDERVPLEPIM  249 (400)
T ss_dssp             HHHHHHTTSSCEEEEECTTTTTT----SGGGGGSC----CSEEEEETGGGTSCSS--CEEEEECBCSSSTTCBCCCCCSS
T ss_pred             HHHHHHHhcCCEEEEEhhhhcCC----CCcChhhc----CcEEEEeHHHhCCCCc--eEEEEEecchhccccccccCcee
Confidence            89999999999999999998421    11222222    2388999999866555  67777 76521100000010000


Q ss_pred             H----hhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCc---eEEEEEecCcc
Q 038416          251 K----GCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQG---AMFVMVKLNVS  323 (387)
Q Consensus       251 ~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---g~~~~~~~~~~  323 (387)
                      .    .......+++...+.++..+++.. ..++++..++++++++++.+.|+ .+++.+. .+..   +.++++.++. 
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~-~~~~~~~~~~~~~~~~~-  325 (400)
T 3vax_A          250 FGGGQERKLRPGTLPVPLIMGLAEAAKIF-EAEHAQWQVAAQDLRSRLLAGLA-STSFQVN-GDQDHVVPHILNLSFED-  325 (400)
T ss_dssp             CSSCTGGGTSCSCCCHHHHHHHHHHHHHH-HHSHHHHHHHHHHHHHHHHHHHT-TTTCEEC-SCTTSBCTTEEEEECTT-
T ss_pred             cCCCceeeeecCCCCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHhhC-CCCEEEe-CCcccCCCCEEEEEeCC-
Confidence            0    001123455666777666666532 34578888999999999999998 7788744 4433   3455655542 


Q ss_pred             cccCCCcHHHHHHHHHHhcCeEEEcCCccCC-------------------CCeEEEEe-e--CChHhHHHHHHHHHHHHH
Q 038416          324 MLEDIGDDLEFCLKLAKEESVIILPGRTVGM-------------------KNWLRIAF-A--AEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       324 ~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-------------------~~~~Ri~~-~--~~~e~~~~~~~~l~~~~~  381 (387)
                           .+..++...+ . +||.+.+|..|..                   .+++||++ +  .+++++++++++|+++++
T Consensus       326 -----~~~~~l~~~L-~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~  398 (400)
T 3vax_A          326 -----VDAEAFLVTL-K-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKP  398 (400)
T ss_dssp             -----CCHHHHHHHH-H-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC-------------------
T ss_pred             -----CCHHHHHHHH-h-cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhc
Confidence                 1456676666 4 7999998865432                   38999999 6  478999999999988876


Q ss_pred             H
Q 038416          382 R  382 (387)
Q Consensus       382 ~  382 (387)
                      +
T Consensus       399 ~  399 (400)
T 3vax_A          399 S  399 (400)
T ss_dssp             -
T ss_pred             c
Confidence            4

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.97  E-value=3e-30  Score=240.42  Aligned_cols=318  Identities=16%  Similarity=0.146  Sum_probs=220.9

Q ss_pred             CcHHHHHHHHHHhcCCCC--CCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc--CCCCeEE
Q 038416           26 DSTVAEDAVVDALRTAHY--NCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA--RPGANIL  101 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~--~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~g~~vl  101 (387)
                      .++.+.+++.+++.....  ..| ......++++.+++++    +  +++++|++++|+++|+..+++++.  .+|+.|+
T Consensus        62 ~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~----~--~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi  134 (395)
T 1vef_A           62 GNPEVVEAVKRQAETLMAMPQTL-PTPMRGEFYRTLTAIL----P--PELNRVFPVNSGTEANEAALKFARAHTGRKKFV  134 (395)
T ss_dssp             TCHHHHHHHHHHHHHCCCCCTTS-CCHHHHHHHHHHHHTS----C--TTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEE
T ss_pred             CCHHHHHHHHHHHHhCCCCcccc-CCHHHHHHHHHHHHhc----C--CCcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEE
Confidence            889999999999875311  112 1223445555555554    3  467899999999999999998864  5789999


Q ss_pred             EcCCCCcch-HHHhhccCCCceeee---eccCCCCC--ccCChhhHHHhhccCceEEEEeCCCCCccccC-CHHHHHHHH
Q 038416          102 IPRPGYPLY-EIHAAGSNNNLEARH---YDLLPEKR--WEVDLDGVEALADENTVAIVIINPGNPCGNVF-SYQHLQKIA  174 (387)
Q Consensus       102 ~~~p~~~~~-~~~~~~~~~g~~~~~---~~~~~~~~--~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~-~~~~~~~l~  174 (387)
                      ++.|+|++. ...+.  ..|.+...   .|+..+..  ...|++++++++++++++|+++.++||||..+ +.+++++|.
T Consensus       135 ~~~~~y~~~~~~~~~--~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~  212 (395)
T 1vef_A          135 AAMRGFSGRTMGSLS--VTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAR  212 (395)
T ss_dssp             EETTCCCCSSHHHHH--TCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHH
T ss_pred             EEcCCcCCCchhhhh--hcCCcccccccCCCCCCeeEeCCCcHHHHHHHhccCEEEEEEeCccCCCCccCCCHHHHHHHH
Confidence            999999764 44555  56665321   12211100  01489999999988888877655678999764 688899999


Q ss_pred             HHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhh
Q 038416          175 RTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL  254 (387)
Q Consensus       175 ~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~  254 (387)
                      ++|+++|+++|+|++|+++.+.+... ++.......+++   |+||+++. |+|+||+++++        ++++.+....
T Consensus       213 ~l~~~~~~~li~Dea~~~~~~~g~~~-~~~~~~~~~d~~---s~sK~~~~-g~~~G~~~~~~--------~~~~~l~~~~  279 (395)
T 1vef_A          213 EITQEKGALLILDEIQTGMGRTGKRF-AFEHFGIVPDIL---TLAKALGG-GVPLGVAVMRE--------EVARSMPKGG  279 (395)
T ss_dssp             HHHHHHTCEEEEECTTTTTTTTSSSS-THHHHTCCCSEE---EECGGGGT-TSSCEEEEEEH--------HHHHTSCTTS
T ss_pred             HHHHHcCCEEEEEecccCCccCCchh-HhhhcCCCCCEE---EEcccccC-CCceEEEEehH--------HHHhhhccCC
Confidence            99999999999999999765444321 111111111222   88999876 89999999976        5666655421


Q ss_pred             -hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCCCceEEEEEecCcccccCCCcHH
Q 038416          255 -NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCP-VKPQGAMFVMVKLNVSMLEDIGDDL  332 (387)
Q Consensus       255 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~  332 (387)
                       ..+.+++++.+.++..+++...+   .+..++++++++++.+.|++++. ..+ ..+..|+++|+.++.       +..
T Consensus       280 ~~~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~g~~~~~~~~~-------~~~  348 (395)
T 1vef_A          280 HGTTFGGNPLAMAAGVAAIRYLER---TRLWERAAELGPWFMEKLRAIPS-PKIREVRGMGLMVGLELKE-------KAA  348 (395)
T ss_dssp             SCCSSTTCHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCC-TTEEEEEEETTEEEEEESS-------CSH
T ss_pred             cCCCcCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHhhc-CceEEEEEEEEEEEEEEcC-------hHH
Confidence             23456778888888777765322   34567788888889899988732 211 123456788888763       245


Q ss_pred             HHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHH
Q 038416          333 EFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFC  380 (387)
Q Consensus       333 ~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~  380 (387)
                      ++...+++++||.+.++.    .+++||+++  .+++++++++++|++++
T Consensus       349 ~l~~~l~~~~gi~v~~~~----~~~iRi~~~~~~~~~~i~~~~~~l~~~l  394 (395)
T 1vef_A          349 PYIARLEKEHRVLALQAG----PTVIRFLPPLVIEKEDLERVVEAVRAVL  394 (395)
T ss_dssp             HHHHHHHHHHCEECEESS----TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCeEEecCC----CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            677777636799999863    689999884  68999999999998875

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.97  E-value=1e-30  Score=246.55  Aligned_cols=332  Identities=14%  Similarity=0.077  Sum_probs=217.4

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc--CCCCeEEEc
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA--RPGANILIP  103 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~g~~vl~~  103 (387)
                      .+|.+.+++.+++.....  ++. ....+++..+++.+.+.++  .+.++|++|+|+++|+..+++.+.  ..+++|++.
T Consensus        60 ~~p~v~~a~~~~~~~~~~--~~~-~~~~~~~~~l~~~la~~~~--~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~  134 (433)
T 1zod_A           60 CHPEIVSVIGEYAGKLDH--LFS-EMLSRPVVDLATRLANITP--PGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGF  134 (433)
T ss_dssp             TCHHHHHHHHHHHHHCCC--CCT-TCCCHHHHHHHHHHHHHSC--TTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCHHHHHHHHHHHHhCcc--ccc-ccCCHHHHHHHHHHHHhCC--CCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEE
Confidence            589999999998875311  111 1222344455555544443  457899999999999999998753  235799999


Q ss_pred             CCCCcchHHHhhccCC------------CceeeeeccCC--CCCc--------cCChhhHHHhhcc---CceEEEEeCC-
Q 038416          104 RPGYPLYEIHAAGSNN------------NLEARHYDLLP--EKRW--------EVDLDGVEALADE---NTVAIVIINP-  157 (387)
Q Consensus       104 ~p~~~~~~~~~~~~~~------------g~~~~~~~~~~--~~~~--------~~~~~~l~~~~~~---~~~~v~l~~p-  157 (387)
                      +|+|+++.....  ..            ...+..++++.  ...+        .+|+++|+++++.   ....+++++| 
T Consensus       135 ~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~  212 (433)
T 1zod_A          135 AQSWHGMTGAAA--SATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPI  212 (433)
T ss_dssp             TTCCCCSSHHHH--HTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSE
T ss_pred             CCCcCCCChhHH--hhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccc
Confidence            999987544322  11            01233333221  1111        2368999988863   3344556777 


Q ss_pred             CCCccc-cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeC
Q 038416          158 GNPCGN-VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSD  236 (387)
Q Consensus       158 ~nptG~-~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~  236 (387)
                      +||||. .++.+++++|.++|++||+++|+||+|+++.+.+... .+.......+   +.|+||.++. |+|+||+++++
T Consensus       213 ~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~-~~~~~~~~~d---i~s~sK~~~~-G~~ig~~~~~~  287 (433)
T 1zod_A          213 LSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDGVTPD---ILTLSKTLGA-GLPLAAIVTSA  287 (433)
T ss_dssp             ETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-THHHHTCCCS---EEEECHHHHT-TSSCEEEEECH
T ss_pred             cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHh-HHhhcCCCCC---EEEecccccC-CCCeeEEEEhH
Confidence            588996 5778889999999999999999999999876554321 1111111112   3489999886 89999999976


Q ss_pred             CCCcccchhHHHHHHhhh-h--ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc----CCCCCCCCC
Q 038416          237 PNGILQNSGFVDSIKGCL-N--AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE----IPCITCPVK  309 (387)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~  309 (387)
                              ++++.+.... .  .+++.+++++.++.++++...+   ....++++++++.+++.|++    ++.+. . .
T Consensus       288 --------~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~~---~~~~~~~~~~~~~l~~~l~~l~~~~~~~~-~-~  354 (433)
T 1zod_A          288 --------AIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR---DGLVARANVMGDRLRRGLLDLMERFDCIG-D-V  354 (433)
T ss_dssp             --------HHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCTTEE-E-E
T ss_pred             --------HHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCCeE-E-E
Confidence                    6777776532 1  3566788888888887764322   12345555666666666654    34333 2 2


Q ss_pred             CCceEEEEEecCccc---ccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHHHHh
Q 038416          310 PQGAMFVMVKLNVSM---LEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       310 ~~~g~~~~~~~~~~~---~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      +..|.|+|+.++...   .+......++...++ ++||.+.||..|+.++++||++  ..+++++++++++|+++++++
T Consensus       355 ~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~~  432 (433)
T 1zod_A          355 RGRGLLLGVEIVKDRRTKEPADGLGAKITRECM-NLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA  432 (433)
T ss_dssp             EEETTEEEEEEEEETTTTEECTTHHHHHHHHHH-HTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEEEEecCccccCCChHHHHHHHHHHH-HCCCeEeccCCCCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHHh
Confidence            344667788775311   000012456666665 6799999987665558999987  468999999999999998764

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-29  Score=243.57  Aligned_cols=335  Identities=13%  Similarity=0.068  Sum_probs=242.9

Q ss_pred             CCCcHHHHHHHHHHhcCC---CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC-----
Q 038416           24 LSDSTVAEDAVVDALRTA---HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR-----   95 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~---~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-----   95 (387)
                      ++.++.+.+++.+++...   +..+|....+..++++.+++++.+.+|.+.+++++++++|+++++..++.++++     
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~  153 (497)
T 3mc6_A           74 YHGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHH  153 (497)
T ss_dssp             SCCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhc
Confidence            345578888888877642   233455555678899999999988888665678999999999999999999864     


Q ss_pred             CC---CeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHH
Q 038416           96 PG---ANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQK  172 (387)
Q Consensus        96 ~g---~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~  172 (387)
                      +|   +.|+++.|+|.++...+.  ..|.+++.+++++ +++.+|+++|++++++++++|++++|+||||.+.+   +++
T Consensus       154 ~g~~~~~Vi~~~~~h~~~~~~~~--~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~---l~~  227 (497)
T 3mc6_A          154 RGITEPEIIAPVTAHAGFDKAAY--YFGMKLRHVELDP-TTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADD---IEG  227 (497)
T ss_dssp             SCCSSCEEEEETTSCHHHHHHHH--HSCCEEEEECBCT-TTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCS---CTT
T ss_pred             CCCCCceEEEeCCccHHHHHHHH--HcCCeEEEEecCc-ccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCC---HHH
Confidence            56   899999999999999999  9999999999864 35689999999999999999999999999999977   788


Q ss_pred             HHHHHHhcCcEEeecccccccccC-----CCCCc-cccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          173 IARTARNLGIIVIADEVYNHLAFG-----STPYV-PMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       173 l~~~~~~~~~~li~D~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      |.++|+++|+++|+|++|+++...     +.+.. ++. ....+..+++.|++|+ +.++.++|++++++        +.
T Consensus       228 i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~-~~~~g~d~~~~s~~K~-l~~~~~~g~~~~~~--------~~  297 (497)
T 3mc6_A          228 LGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLD-FRVPGVTSISCDTHKY-GFAPKGSSVIMYRN--------SD  297 (497)
T ss_dssp             TTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCS-TTSTTCCEEEEETTTT-TCCCSSCEEEECSS--------HH
T ss_pred             HHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCcccc-ccCCCCcEEEECchhh-cCCCCCceeEEecC--------HH
Confidence            999999999999999999965421     11111 111 1112234778899998 56778899999876        33


Q ss_pred             HHHHHhhhhcc------------CCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCCce
Q 038416          247 VDSIKGCLNAA------------SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE-IPCITCPVKPQGA  313 (387)
Q Consensus       247 ~~~~~~~~~~~------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~g  313 (387)
                      ...........            ++.+.....++..++.......+.+..++..++++++.+.|++ +|++.++..|..+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~  377 (497)
T 3mc6_A          298 LRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYS  377 (497)
T ss_dssp             HHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSS
T ss_pred             HHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCee
Confidence            33221111000            0111111222333333333466788889999999999999999 7898866445545


Q ss_pred             EEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee-CChHhHHHHHHHHHHHHHHhhh
Q 038416          314 MFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA-AEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~-~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      . +++..+.      .+..++...| .++||.+.++..   +..+|+++. .+++++++++++|++++++..+
T Consensus       378 ~-v~~~~~~------~~~~~l~~~L-~~~Gi~v~~~~~---~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~~~  439 (497)
T 3mc6_A          378 V-ISFSSKT------LNIHELSDRL-SKKGWHFNALQK---PVALHMAFTRLSAHVVDEICDILRTTVQELKS  439 (497)
T ss_dssp             E-EEEECTT------TTHHHHHHHH-HTTTCBCEECCS---SCCEEEECCTTTTCTHHHHHHHHHHHHHHHTC
T ss_pred             E-EEEeCCC------CCHHHHHHHH-HhCCEEEecCCC---CCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHh
Confidence            4 4444431      1456666666 556998876543   457899995 5789999999999999987754

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.97  E-value=1.9e-29  Score=242.81  Aligned_cols=312  Identities=13%  Similarity=0.073  Sum_probs=229.5

Q ss_pred             CCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCE--EEcCChHHHHHHHHHhhcCCC--------CeEEEcCCCCcchHHHh
Q 038416           45 CYSPTLGVPSARRGIADYLNRDLPYKLSPEDV--YLTLGCSQAIEISLSVLARPG--------ANILIPRPGYPLYEIHA  114 (387)
Q Consensus        45 ~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i--~~~~g~~~a~~~~~~~l~~~g--------~~vl~~~p~~~~~~~~~  114 (387)
                      .|....+..++++.+++++.+.+|.+.+++++  ++|+|+++++..+++++.++|        |+|+++.|+|.++...+
T Consensus       130 ~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~~  209 (514)
T 3mad_A          130 HPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAA  209 (514)
T ss_dssp             CTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHHH
T ss_pred             ccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHHH
Confidence            44444466788888888888877765555788  999999999999999998766        89999999999999999


Q ss_pred             hccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccc
Q 038416          115 AGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLA  194 (387)
Q Consensus       115 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~  194 (387)
                      +  ..|.+++.++++.  ++.+|+++|++++++++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|+++.
T Consensus       210 ~--~~G~~v~~v~~~~--~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~i~livDea~~~~~  282 (514)
T 3mad_A          210 Q--YFGIKLVRTPLDA--DYRADVAAMREAITPNTVVVAGSAPGYPHGVVDP---IPEIAALAAEHGIGCHVDACLGGFI  282 (514)
T ss_dssp             H--HHTCEEEEECBCT--TSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred             H--HcCCeeEEeeeCC--CCCCCHHHHHHHhccCCEEEEEeCCCCCCccccC---HHHHHHHHHHhCCeEEEeccccccc
Confidence            9  8999999999864  5678999999999999999999999999999987   7889999999999999999999765


Q ss_pred             cC-----CCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhh------------hcc
Q 038416          195 FG-----STPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL------------NAA  257 (387)
Q Consensus       195 ~~-----~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~------------~~~  257 (387)
                      +.     +.+..++. ....+..+++.|++|+ +.++.++|++++++        +.........            ...
T Consensus       283 ~~~~~~~g~~~~~~~-~~~~g~d~~~~s~~K~-l~~~~~~g~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  352 (514)
T 3mad_A          283 LPWAERLGYPVPPFD-FRLEGVTSVSADTHKY-GYGAKGTSVILYRR--------PDLLHYQYFIAADWPGGLYFSPTFA  352 (514)
T ss_dssp             HHHHHHTTCCCCCCS-TTSTTCCEEEECTTTT-TCCCSSCEEEEESS--------HHHHTTTCEEESSCTTCSEEESSSC
T ss_pred             chhHHhcCCCCCccc-ccCCCCcEEEECchhc-cCCCCCeEEEEEeC--------HHHhccccccccccCCCcccCCccC
Confidence            41     22111221 1122235788899999 46778899999876        3322211100            001


Q ss_pred             CCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHH
Q 038416          258 SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLK  337 (387)
Q Consensus       258 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  337 (387)
                      ++.+.....++..++......++.+..+++.++++++.+.|++++++.++ .+..+ ++++..+.      .+..++...
T Consensus       353 gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~~-~~~~~~~~------~~~~~l~~~  424 (514)
T 3mad_A          353 GSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKIL-GDPLW-VIAVASDE------LNIYQVMEE  424 (514)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEES-SCCSS-EEEEECSS------SCHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEe-CCCeE-EEEEeCCC------CCHHHHHHH
Confidence            12222223333344443345677888999999999999999998888855 34434 55655432      145667666


Q ss_pred             HHHhcCeEEEcCCccCCCCeEEEEee---CChHhHHHHHHHHHHHHHHhhh
Q 038416          338 LAKEESVIILPGRTVGMKNWLRIAFA---AEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       338 ll~~~gi~v~~g~~~~~~~~~Ri~~~---~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      + .++||.+ +|..  .++++|+++.   ++++++++++++|+++++++.+
T Consensus       425 L-~~~Gi~v-~g~~--~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~  471 (514)
T 3mad_A          425 M-AGRGWRL-NGLH--RPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRA  471 (514)
T ss_dssp             H-HTTTCBC-EEET--TTTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred             H-HhcCCEe-ccCC--CCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            6 4559987 4432  3578999995   3579999999999999988764

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.97  E-value=1.2e-29  Score=236.74  Aligned_cols=314  Identities=16%  Similarity=0.158  Sum_probs=231.1

Q ss_pred             cHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh-cCCCCeEEEcCC
Q 038416           27 STVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL-ARPGANILIPRP  105 (387)
Q Consensus        27 ~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~g~~vl~~~p  105 (387)
                      ++.+.+++.+.+...   .|....+..++|+.++++++      .  +++++++|+++++..++.++ +++||+|+++.|
T Consensus        43 ~~~v~~a~~~~~~~~---~y~~~~~~~~l~~~la~~~~------~--~~~v~~~~Gt~a~~~~l~~~~~~~gd~vl~~~~  111 (399)
T 2oga_A           43 RAETDAAIARVLDSG---RYLLGPELEGFEAEFAAYCE------T--DHAVGVNSGMDALQLALRGLGIGPGDEVIVPSH  111 (399)
T ss_dssp             HHHHHHHHHHHHHHT---CCSSSHHHHHHHHHHHHHTT------S--SEEEEESCHHHHHHHHHHHTTCCTTCEEEEESS
T ss_pred             CHHHHHHHHHHHhcC---CCCCchhHHHHHHHHHHHHC------C--CeEEEecCHHHHHHHHHHHhCCCCcCEEEECCC
Confidence            489999999988653   45555677899999999983      2  36788888899999999999 899999999999


Q ss_pred             CCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEe
Q 038416          106 GYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVI  185 (387)
Q Consensus       106 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li  185 (387)
                      +|+++...++  ..|.+++.+++++ +++.+|++++++++++++++|+   ++||||...+   +++|.++|+++|+++|
T Consensus       112 ~~~~~~~~~~--~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~---l~~i~~l~~~~~~~li  182 (399)
T 2oga_A          112 TYIASWLAVS--ATGATPVPVEPHE-DHPTLDPLLVEKAITPRTRALL---PVHLYGHPAD---MDALRELADRHGLHIV  182 (399)
T ss_dssp             SCTHHHHHHH--HTTCEEEEECBCS-SSSSBCHHHHHHHCCTTEEEEC---CBCGGGCCCC---HHHHHHHHHHHTCEEC
T ss_pred             ccHHHHHHHH--HCCCEEEEEecCC-CCCCcCHHHHHHhcCCCCeEEE---EeCCcCCccC---HHHHHHHHHHcCCEEE
Confidence            9999999999  8999999998864 2467899999999988787766   5789999977   8889999999999999


Q ss_pred             ecccccccc-cCCCCCccccccCCCccEEEEecC--cccccccccceEEEEeeCCCCcccchhHHHHHHhhhhc------
Q 038416          186 ADEVYNHLA-FGSTPYVPMGVFGSIVPVITLGSI--SKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNA------  256 (387)
Q Consensus       186 ~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~s~--sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~------  256 (387)
                      +|++|+.+. +++.   .+..+.    .+++.|+  +|.++.+| ++|++++++       +++++.+......      
T Consensus       183 ~Dea~~~g~~~~~~---~~~~~~----di~~~S~~~sK~~~~~G-~~g~~~~~~-------~~~~~~l~~~~~~g~~~~~  247 (399)
T 2oga_A          183 EDAAQAHGARYRGR---RIGAGS----SVAAFSFYPGKNLGCFG-DGGAVVTGD-------PELAERLRMLRNYGSRQKY  247 (399)
T ss_dssp             EECTTCTTCEETTE---ETTCTT----CEEEEECCTTSSSCCSS-CCEEEEESC-------HHHHHHHHHHHBTTCSSTT
T ss_pred             EECcccccCccCCe---eccccc----CEEEEeCCCCccCCcCC-ceEEEEeCC-------HHHHHHHHHHHhcCccccc
Confidence            999998653 3222   121111    3788888  79998878 899999863       2576666654321      


Q ss_pred             -------cCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCC
Q 038416          257 -------ASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIG  329 (387)
Q Consensus       257 -------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  329 (387)
                             +...+++.+.++...++.     +++..++.+++++++.+.|++++++.....|..+.++|+.++...    .
T Consensus       248 ~~~~~g~~~~~~~~~~a~~~~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~----~  318 (399)
T 2oga_A          248 SHETKGTNSRLDEMQAAVLRIRLAH-----LDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRT----E  318 (399)
T ss_dssp             CCCSCCCBCCCCHHHHHHHHHHHHT-----HHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEEC----S
T ss_pred             cccccccCCCcCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEEEEEC----C
Confidence                   123456666665555543     344556666778888889988878774434555666553333211    1


Q ss_pred             cHHHHHHHHHHhcCeEEEcCCcc-----------CC------------CCeEEEEee--CChHhHHHHHHHHHHHHHHhh
Q 038416          330 DDLEFCLKLAKEESVIILPGRTV-----------GM------------KNWLRIAFA--AEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       330 ~~~~~~~~ll~~~gi~v~~g~~~-----------~~------------~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      +..++...| .++||.+.++...           +.            .+++||+++  .++++++++++.|++++++++
T Consensus       319 ~~~~l~~~L-~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l~  397 (399)
T 2oga_A          319 RRDELRSHL-DARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERVD  397 (399)
T ss_dssp             SHHHHHHHH-HHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSCC
T ss_pred             CHHHHHHHH-HHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            455666666 5679999875321           00            157999995  589999999999999988765


Q ss_pred             h
Q 038416          385 K  385 (387)
Q Consensus       385 ~  385 (387)
                      +
T Consensus       398 ~  398 (399)
T 2oga_A          398 Q  398 (399)
T ss_dssp             -
T ss_pred             c
Confidence            4

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.97  E-value=4.7e-30  Score=240.76  Aligned_cols=317  Identities=14%  Similarity=0.147  Sum_probs=220.9

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC-------CC-
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR-------PG-   97 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-------~g-   97 (387)
                      .+|.+.+++.+++....  .++. ....++++.+++.+.+..+    .+++++++|+++|+..+++++..       +| 
T Consensus        74 ~~p~v~~ai~~~~~~~~--~~~~-~~~~~~~~~l~~~la~~~g----~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~  146 (420)
T 2pb2_A           74 CHPALVEALKSQGETLW--HTSN-VFTNEPALRLGRKLIDATF----AERVLFMNSGTEANETAFKLARHYACVRHSPFK  146 (420)
T ss_dssp             TCHHHHHHHHHHHTTCC--CCCT-TSCCHHHHHHHHHHHHHSS----CSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred             CCHHHHHHHHHHHHhcc--cccC-ccCCHHHHHHHHHHHhhCC----CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCC
Confidence            68999999999987531  1211 1123455555555555443    57999999999999999998865       67 


Q ss_pred             CeEEEcCCCCcchHHH-hhccCCCce------------eeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccc-
Q 038416           98 ANILIPRPGYPLYEIH-AAGSNNNLE------------ARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGN-  163 (387)
Q Consensus        98 ~~vl~~~p~~~~~~~~-~~~~~~g~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~-  163 (387)
                      ++|++++|+|+++... ..  ..|.+            +..++.       .|+++|++++++++++|++++++|++|+ 
T Consensus       147 ~~vi~~~~~yh~~~~~~~~--~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~le~~i~~~~~~vi~~p~~~~gG~~  217 (420)
T 2pb2_A          147 TKIIAFHNAFHGRSLFTVS--VGGQPKYSDGFGPKPADIIHVPF-------NDLHAVKAVMDDHTCAVVVEPIQGEGGVQ  217 (420)
T ss_dssp             CEEEEETTCCCCSSHHHHH--HSSCHHHHTTSSSCCSCEEEECT-------TCHHHHHHHCCTTEEEEEECSEETTTTSE
T ss_pred             CEEEEEeCCcCCcCHHHHH--hcCCccccccCCCCCCCeEEecC-------CCHHHHHHHhccCceEEEEeCCcCCCCee
Confidence            5999999999876433 33  34433            222221       2799999999888888888888888885 


Q ss_pred             cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccc
Q 038416          164 VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQN  243 (387)
Q Consensus       164 ~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~  243 (387)
                      .++.+++++|.++|++||+++|+||+|.++.+.+.... +..+....+++   |+||.++ +|+|+||+++++       
T Consensus       218 ~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~-~~~~~~~~dii---t~sK~l~-~G~~iG~~~~~~-------  285 (420)
T 2pb2_A          218 AATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFA-YMHYGVTPDIL---TSAKALG-GGFPVSAMLTTQ-------  285 (420)
T ss_dssp             ECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSH-HHHHTCCCSEE---EECGGGG-TTSCCEEEEECH-------
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHH-HHhcCCCCCeE---Eeccccc-CCCceEEEEEhH-------
Confidence            68999999999999999999999999998766554321 11122112233   7899987 899999999975       


Q ss_pred             hhHHHHHHhh-hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcC----CCCCCCCCCCceEEEEE
Q 038416          244 SGFVDSIKGC-LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEI----PCITCPVKPQGAMFVMV  318 (387)
Q Consensus       244 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~g~~~~~  318 (387)
                       ++++.+... ...+++++++++.++.++|+...+   ++..++++++++++.+.|+++    |.+. . .+..|.++++
T Consensus       286 -~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~-~~~~g~~~~v  359 (420)
T 2pb2_A          286 -EIASAFHVGSHGSTYGGNPLACAVAGAAFDIINT---PEVLQGIHTKRQQFVQHLQAIDEQFDIFS-D-IRGMGLLIGA  359 (420)
T ss_dssp             -HHHTTCC----CCEECCCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEE-E-EEEETTEEEE
T ss_pred             -HHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhcCCCeE-E-EEecceEEEE
Confidence             555555432 123457788888888887775332   345566667777777777654    3322 1 1334667788


Q ss_pred             ecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHHHHhh
Q 038416          319 KLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      .++....   .+..++...++ ++||.+.|+.    ++++|+++  ..+++++++++++|+++++++.
T Consensus       360 ~~~~~~~---~~~~~l~~~l~-~~Gi~v~~~~----~~~iRl~~~~~~t~eei~~~~~~l~~~l~~~~  419 (420)
T 2pb2_A          360 ELKPKYK---GRARDFLYAGA-EAGVMVLNAG----ADVMRFAPSLVVEEADIHEGMQRFAQAVGKVV  419 (420)
T ss_dssp             EECGGGT---TCHHHHHHHHH-HTTEECEESS----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EECCCch---HHHHHHHHHHH-HCCCEEEeCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            7764210   13456766664 5799999874    57999997  4689999999999999987653

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.97  E-value=7.5e-30  Score=240.57  Aligned_cols=322  Identities=14%  Similarity=0.115  Sum_probs=214.4

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCCCC---------CcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc-
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSPTL---------GVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA-   94 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~~~---------~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-   94 (387)
                      ++|+.+.+++.+.+...  ..|+...         ...++|+.+++++      ++++++|++|+|+++++..++.++. 
T Consensus        29 ~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~la~~~------g~~~~~v~~~~g~t~a~~~~~~~~~~  100 (432)
T 3a9z_A           29 PLEPEVIQAVTEAMKEA--WGNPSSSYVAGRKAKDIINTARASLAKMI------GGKPQDIIFTSGGTESNNLVIHSTVR  100 (432)
T ss_dssp             CCCHHHHHHHHHHHHHC--CSCTTCSSHHHHHHHHHHHHHHHHHHHHH------TCCGGGEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHh--cCCCccCcHHHHHHHHHHHHHHHHHHHHc------CCCcCeEEEeCChHHHHHHHHHHHHh
Confidence            67899999999988652  2333311         1358899999988      4567899999999999999999986 


Q ss_pred             -------CCCCeEEEcCCCCcch-----------------HHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCce
Q 038416           95 -------RPGANILIPRPGYPLY-----------------EIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTV  150 (387)
Q Consensus        95 -------~~g~~vl~~~p~~~~~-----------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  150 (387)
                             ++||+|+++.|+|+.+                 ....+  ..|.+++.++++.+ ++.+|+++|+++++++++
T Consensus       101 ~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~--~~g~~v~~v~~~~~-~~~~d~~~l~~~i~~~~~  177 (432)
T 3a9z_A          101 CFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVE--DQVAEVTFVPVSKV-NGQVEVEDILAAVRPTTC  177 (432)
T ss_dssp             HHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHH--TTSCEEEEECCCTT-TSSCCHHHHHHTCCTTEE
T ss_pred             hhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHH--hcCcEEEEEecCcc-cCCcCHHHHHHhccCCce
Confidence                   5899999999999765                 34445  57899999987642 346899999999988899


Q ss_pred             EEEEeCCCCCccccCCHHHHHHHHHHHHhcC----------cEEeecccccccccCCCCCccccccCCCccEEEEecCcc
Q 038416          151 AIVIINPGNPCGNVFSYQHLQKIARTARNLG----------IIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISK  220 (387)
Q Consensus       151 ~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~----------~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK  220 (387)
                      +|++++|+||||.+++   +++|.++|++++          +++|+|++|+.+.    ....+.....+   +++.|+||
T Consensus       178 ~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~----~~~~~~~~~~d---~~~~s~~K  247 (432)
T 3a9z_A          178 LVTIMLANNETGVIMP---ISEISRRIKALNQIRAASGLPRVLVHTDAAQALGK----RRVDVEDLGVD---FLTIVGHK  247 (432)
T ss_dssp             EEECCSBCTTTCBBCC---HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTT----SCCCHHHHCCS---EEEEEGGG
T ss_pred             EEEEECcccCcccccC---HHHHHHHHHhcCcccccccCCceEEEEEchhhhCC----cccChhhcCCC---EEEEehhH
Confidence            9999999999999999   567888888998          9999999997532    22222223322   66899999


Q ss_pred             cccccccceEEEEeeCCCCcccchhHHHHHHh--------hhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHH
Q 038416          221 RWIVPGWRLGWLVTSDPNGILQNSGFVDSIKG--------CLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETAD  292 (387)
Q Consensus       221 ~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  292 (387)
                      ++   |.|+||+++++...       ...+..        .....++++.+.+.++.++++.. +.++++..+++.++++
T Consensus       248 ~~---g~~~G~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~-~~~~~~~~~~~~~~~~  316 (432)
T 3a9z_A          248 FY---GPRIGALYVRGVGK-------LTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLV-SENCETYEAHMRDIRD  316 (432)
T ss_dssp             TT---CCSCEEEEETTBTT-------TBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             hc---CCcceEEEEccccc-------cCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHH
Confidence            86   35699999975210       111111        01123456777777777777643 3467888899999999


Q ss_pred             HHHHHhhcCCCCCCC-CCC-----CceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCcc--------------
Q 038416          293 ICYERIKEIPCITCP-VKP-----QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTV--------------  352 (387)
Q Consensus       293 ~~~~~l~~~~~~~~~-~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~--------------  352 (387)
                      ++.+.|++++++.+. ..|     ..+..+++.++...    .+..++...+   .++.+.+|..+              
T Consensus       317 ~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l---~~i~~~~G~~~~~~~~~~~~~~l~~  389 (432)
T 3a9z_A          317 YLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQ----LRGYMVLAQC---QTLLASVGASCHSDHEDRPSPVLLS  389 (432)
T ss_dssp             HHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTT----CCHHHHHHHC---SSEECBSSCGGGGGGTTSCCHHHHH
T ss_pred             HHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCC----CcHHHHHHHh---cCeEEeccccccCCCCCCccHHHHh
Confidence            999999875444321 011     12223444444210    1233444432   26776666433              


Q ss_pred             -CC-----CCeEEEEeeC--ChHhHHHHHHHHHHHHHHhhh
Q 038416          353 -GM-----KNWLRIAFAA--EPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       353 -~~-----~~~~Ri~~~~--~~e~~~~~~~~l~~~~~~~~~  385 (387)
                       +.     .+++||+++.  +++++++++++|+++++++++
T Consensus       390 ~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~~  430 (432)
T 3a9z_A          390 CGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLEG  430 (432)
T ss_dssp             TTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHS
T ss_pred             cCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence             21     3789999975  899999999999999887653

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.97  E-value=4.4e-29  Score=234.69  Aligned_cols=329  Identities=16%  Similarity=0.139  Sum_probs=233.8

Q ss_pred             CCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCC-CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHH
Q 038416           12 SPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSP-TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISL   90 (387)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~   90 (387)
                      +.+.|.|    +++.|+.+.+++.+.+...   .|+. ..+..++|+.++++++        .+++++|+|+++++..++
T Consensus        20 ~l~~~~p----~~~~p~~~~~a~~~~~~~~---~y~~~~~~~~~l~~~la~~~~--------~~~v~~~~ggt~al~~~l   84 (424)
T 2po3_A           20 PLLVGRP----NRIDRARLYERLDRALDSQ---WLSNGGPLVREFEERVAGLAG--------VRHAVATCNATAGLQLLA   84 (424)
T ss_dssp             CEETTCC----CCCCHHHHHHHHHHHHHHT---CCSSSCHHHHHHHHHHHHHHT--------SSEEEEESCHHHHHHHHH
T ss_pred             cccccCC----CCCChHHHHHHHHHHHhcC---CcccCCHHHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHH
Confidence            3556555    8888999999999988753   4665 5678999999999993        358999999999999999


Q ss_pred             HhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHH
Q 038416           91 SVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHL  170 (387)
Q Consensus        91 ~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~  170 (387)
                      .++. +||+|+++.|+|+++...+.  ..|.+++.+++++ +++.+|+++|++++++++++|++++   |||...+   +
T Consensus        85 ~~l~-~gd~Vlv~~~~~~~~~~~~~--~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~v~~~~---~tG~~~~---l  154 (424)
T 2po3_A           85 HAAG-LTGEVIMPSMTFAATPHALR--WIGLTPVFADIDP-DTGNLDPDQVAAAVTPRTSAVVGVH---LWGRPCA---A  154 (424)
T ss_dssp             HHHT-CCSEEEEESSSCTHHHHHHH--HTTCEEEEECBCT-TTSSBCHHHHGGGCCTTEEEEEEEC---GGGCCCC---H
T ss_pred             HHcC-CCCEEEECCCccHHHHHHHH--HcCCEEEEEecCC-CcCCcCHHHHHHhhCcCCcEEEEEC---CCCCcCC---H
Confidence            9985 78999999999999999988  8999999999864 3567899999999988888888764   8998754   8


Q ss_pred             HHHHHHHHhcCcEEeeccccc-ccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHH
Q 038416          171 QKIARTARNLGIIVIADEVYN-HLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDS  249 (387)
Q Consensus       171 ~~l~~~~~~~~~~li~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~  249 (387)
                      ++|.++|+++|+++|+|++|+ ++.+++.   ++..+. +   +++.|+||.++++|.|+||+++++       +++++.
T Consensus       155 ~~i~~la~~~~~~li~Dea~~~g~~~~~~---~~~~~~-d---i~~~S~sk~K~l~~~~~G~~v~~~-------~~l~~~  220 (424)
T 2po3_A          155 DQLRKVADEHGLRLYFDAAHALGCAVDGR---PAGSLG-D---AEVFSFHATKAVNAFEGGAVVTDD-------ADLAAR  220 (424)
T ss_dssp             HHHHHHHHHTTCEEEEECTTCTTCEETTE---ETTSSS-S---EEEEECCTTSSSCCSSCEEEEESC-------HHHHHH
T ss_pred             HHHHHHHHHcCCEEEEECccccCCeECCe---eccccc-C---EEEEeCCCCCCccCCCCeEEEeCC-------HHHHHH
Confidence            899999999999999999999 5655542   222221 2   889999966667778999999873       257777


Q ss_pred             HHhhhhccC----C------cchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCce----EE
Q 038416          250 IKGCLNAAS----H------PVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGA----MF  315 (387)
Q Consensus       250 ~~~~~~~~~----~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g----~~  315 (387)
                      +........    .      ...+.+.++...+..  ...+++..++..++++++.+.|++++++.+...+.++    .+
T Consensus       221 l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~  298 (424)
T 2po3_A          221 IRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTS--LDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQY  298 (424)
T ss_dssp             HHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCC
T ss_pred             HHHHHhcCccccccccccCcCCCcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEE
Confidence            765432111    0      001112222222221  2346667777888888898999888777744223333    23


Q ss_pred             EEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccC--------------CC-------CeEEEEe--eCChHhHHHH
Q 038416          316 VMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG--------------MK-------NWLRIAF--AAEPATLEDG  372 (387)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~--------------~~-------~~~Ri~~--~~~~e~~~~~  372 (387)
                      +++.++.... + .+..++...+ .++||.+.+.....              .+       ..+|+++  ..++++++++
T Consensus       299 ~~i~~~~~~~-~-~~~~~l~~~L-~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~  375 (424)
T 2po3_A          299 VIVEIDEATT-G-IHRDLVMEVL-KAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRV  375 (424)
T ss_dssp             EEEEECHHHH-S-SCHHHHHHHH-HHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHH
T ss_pred             EEEEECCccc-h-hhHHHHHHHH-HHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHH
Confidence            3355542000 0 1345565544 67799998731100              01       1277774  4589999999


Q ss_pred             HHHHHHHHHHhh
Q 038416          373 LERIKAFCQRHA  384 (387)
Q Consensus       373 ~~~l~~~~~~~~  384 (387)
                      ++.|++++++..
T Consensus       376 ~~~L~~~~~~~~  387 (424)
T 2po3_A          376 ADLLRLCATRGR  387 (424)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhH
Confidence            999999887654

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.97  E-value=2.5e-30  Score=244.78  Aligned_cols=338  Identities=15%  Similarity=0.091  Sum_probs=221.8

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC--CCCeEEEc
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR--PGANILIP  103 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--~g~~vl~~  103 (387)
                      .+|.+.+++++++...  .+|....+..+++..+++++.+..+.. ..++|++|+|+++|++.+++.+..  .++.|++.
T Consensus        81 ~~p~v~~A~~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~  157 (453)
T 4ffc_A           81 SHPAVAAAIADQATHF--THTCFMVTPYEQYVQVAELLNALTPGD-HDKRTALFNSGAEAVENAIKVARLATGRPAVVAF  157 (453)
T ss_dssp             TCHHHHHHHHHHHHHC--SCCTTTTSCCHHHHHHHHHHHHHSSCS-SCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             CCHHHHHHHHHHHHhc--cccccCcCCCHHHHHHHHHHHHhCCCC-CCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEE
Confidence            4899999999998764  234433344566677777776655421 357999999999999999987652  45899999


Q ss_pred             CCCCcchHHHhhccCCC--------------ceeeeeccCC--CCCccCC--------hhhHHHhhccCceEEEEeCCCC
Q 038416          104 RPGYPLYEIHAAGSNNN--------------LEARHYDLLP--EKRWEVD--------LDGVEALADENTVAIVIINPGN  159 (387)
Q Consensus       104 ~p~~~~~~~~~~~~~~g--------------~~~~~~~~~~--~~~~~~~--------~~~l~~~~~~~~~~v~l~~p~n  159 (387)
                      +++|+++...+.  ..+              ..+..++.+.  .+.++.+        ++.|++.+.+++.++++++|.|
T Consensus       158 ~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~  235 (453)
T 4ffc_A          158 DNAYHGRTNLTM--ALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQ  235 (453)
T ss_dssp             TTCCCCSSHHHH--HHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSB
T ss_pred             cCccCCcchHHH--hhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEEcCCC
Confidence            999997654433  211              1334444321  1112233        3566666666677888888877


Q ss_pred             Ccc--ccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCC
Q 038416          160 PCG--NVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDP  237 (387)
Q Consensus       160 ptG--~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~  237 (387)
                      ++|  ..++.+.+++|.++|++||+++|+||+|.++...|... ....+..   ...+.++||.++. |+|+||+++++ 
T Consensus       236 ~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~-a~~~~~~---~pdi~t~sK~~~~-G~~~G~~~~~~-  309 (453)
T 4ffc_A          236 GEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWF-ASEHEGI---VPDIVTMAKGIAG-GMPLSAVTGRA-  309 (453)
T ss_dssp             TTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-THHHHTC---CCSEEEECGGGGT-TSSCEEEEEEH-
T ss_pred             CCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccc-hhhhcCC---CcchHhhhhhhcC-CcCeEEEEECH-
Confidence            665  45577889999999999999999999999886655322 1111211   1224578999866 89999999976 


Q ss_pred             CCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEE
Q 038416          238 NGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNE-AFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMF  315 (387)
Q Consensus       238 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~  315 (387)
                             ++++.+.... ..+++.+++++.++.++|+...+ ..+++..+.....++.+.+.++.+|.+. . .+..|.+
T Consensus       310 -------~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~-~~~~g~~  380 (453)
T 4ffc_A          310 -------ELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIG-E-VRGRGAM  380 (453)
T ss_dssp             -------HHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEE-E-EEEETTE
T ss_pred             -------HHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeE-E-EEeeceE
Confidence                   6777666443 24677889999988888875322 2233333333444444544445565444 2 2344667


Q ss_pred             EEEecCccc--ccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHhhhc
Q 038416          316 VMVKLNVSM--LEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRHAKK  386 (387)
Q Consensus       316 ~~~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~~~  386 (387)
                      +++.+....  .+......++...+ .++||.+.|+..+  ++++|++++  .+++++++++++|+++++++.+.
T Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~  452 (453)
T 4ffc_A          381 LAIEIVKPGTLEPDAALTKSIAAEA-LSQGVLILTCGTF--GNVIRLLPPLVIGDDLLDEGITALSDIIRAKASH  452 (453)
T ss_dssp             EEEEEBCTTSCCBCHHHHHHHHHHH-HHTTEECCEECTT--SCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC--
T ss_pred             EEEEEecCcccCCCHHHHHHHHHHH-HhCCCEEecCCCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            887763210  00111234455555 5679999987543  478999874  58999999999999999987654

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.97  E-value=2.5e-29  Score=238.65  Aligned_cols=325  Identities=15%  Similarity=0.112  Sum_probs=221.7

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcC
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPR  104 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~  104 (387)
                      +.++.+.+++.    .. ...|....+..+||+.++++++        .+++++|+|+++|+..++.+++++||  +++.
T Consensus        55 ~~~~~~~~a~~----~~-~~~y~~~~~~~~l~~~la~~~~--------~~~~~~~~~gt~a~~~al~~l~~~gd--i~~~  119 (456)
T 2ez2_A           55 AMSDKQWAGMM----MG-DEAYAGSENFYHLERTVQELFG--------FKHIVPTHQGRGAENLLSQLAIKPGQ--YVAG  119 (456)
T ss_dssp             CCCHHHHHHHT----TC-CCCSSSCHHHHHHHHHHHHHHC--------CSEEEEESSHHHHHHHHHHHHCCTTC--EEEE
T ss_pred             cCCHHHHHHhh----cc-hhhcccChhHHHHHHHHHHHhC--------CCcEEEeCCcHHHHHHHHHHhCCCCC--Eecc
Confidence            45677776665    22 2356666678899999999993        35899999999999999999999999  7888


Q ss_pred             CCC-cchHHHhhccCCCceeeeeccCCC----C----CccCChhhHHHhhccCc----eEEEEeCCCC-CccccCCHHHH
Q 038416          105 PGY-PLYEIHAAGSNNNLEARHYDLLPE----K----RWEVDLDGVEALADENT----VAIVIINPGN-PCGNVFSYQHL  170 (387)
Q Consensus       105 p~~-~~~~~~~~~~~~g~~~~~~~~~~~----~----~~~~~~~~l~~~~~~~~----~~v~l~~p~n-ptG~~~~~~~~  170 (387)
                      |+| ..+...+.  ..|.+++.+++...    +    ++.+|+++|++++++++    ++|++++|+| |||.+++.+++
T Consensus       120 ~~~~~~~~~~~~--~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l  197 (456)
T 2ez2_A          120 NMYFTTTRYHQE--KNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANM  197 (456)
T ss_dssp             SSCCHHHHHHHH--HTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHH
T ss_pred             ccccchhHHHHH--HcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHH
Confidence            999 66677888  89999998887631    2    36789999999987665    8889999998 99999999999


Q ss_pred             HHHHHHHHhcCcEEeecccccc----------cccCCCCCcccc-ccCCCccEEEEecCcccccccccceEEEEeeCCCC
Q 038416          171 QKIARTARNLGIIVIADEVYNH----------LAFGSTPYVPMG-VFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNG  239 (387)
Q Consensus       171 ~~l~~~~~~~~~~li~D~~~~~----------~~~~~~~~~~~~-~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~  239 (387)
                      ++|+++|++||+++|+|++|+.          +.+.+....++. .+....+++++ |++|. +.+| +.||+++++   
T Consensus       198 ~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~-S~kk~-~~~~-~gG~~~~~~---  271 (456)
T 2ez2_A          198 RAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTM-SGKKD-CLVN-IGGFLCMND---  271 (456)
T ss_dssp             HHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEE-ETTTT-TCCS-SCEEEEESC---
T ss_pred             HHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEE-eCccc-CCCC-ceeEEEECC---
Confidence            9999999999999999999986          344443211110 01111234444 78887 4456 789999842   


Q ss_pred             cccchhHHHHHHhhhhc------cCCcchHHHHH-HHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCc
Q 038416          240 ILQNSGFVDSIKGCLNA------ASHPVTFIQAA-VPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQG  312 (387)
Q Consensus       240 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  312 (387)
                          +++++.+......      ..+.+.....+ +...++...    ....++..++.+.+.+.|++. ++.+. .|.+
T Consensus       272 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~----~~~~~~~~~~~~~l~~~L~~~-g~~~~-~p~~  341 (456)
T 2ez2_A          272 ----DEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ----YEYIEHRVKQVRYLGDKLKAA-GVPIV-EPVG  341 (456)
T ss_dssp             ----HHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHHHHT-TCCBC-SSCC
T ss_pred             ----HHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHhcC-CCccc-cCCC
Confidence                2577766544321      11122222222 222222111    234445555667777778775 67643 6777


Q ss_pred             eEEEEEecCcccccCCCcHHHH-----HHHHHHhcCeEEEc-CCcc------------CCCCeEEEEee---CChHhHHH
Q 038416          313 AMFVMVKLNVSMLEDIGDDLEF-----CLKLAKEESVIILP-GRTV------------GMKNWLRIAFA---AEPATLED  371 (387)
Q Consensus       313 g~~~~~~~~~~~~~~~~~~~~~-----~~~ll~~~gi~v~~-g~~~------------~~~~~~Ri~~~---~~~e~~~~  371 (387)
                      ++++|+.+.... ++. +..++     ...+++++||.+.+ |..|            ...+++||+++   .+++++++
T Consensus       342 ~~~~~~~~~~~~-~~~-~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~  419 (456)
T 2ez2_A          342 GHAVFLDARRFC-EHL-TQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDV  419 (456)
T ss_dssp             SSEEEEEHHHHT-TTS-CGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHH
T ss_pred             ceEEEEEhHHhc-CCC-ChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHH
Confidence            889998763200 011 12223     55555778998765 4322            11378999997   68999999


Q ss_pred             HHHHHHHHHHHhh
Q 038416          372 GLERIKAFCQRHA  384 (387)
Q Consensus       372 ~~~~l~~~~~~~~  384 (387)
                      ++++|++++++..
T Consensus       420 ~~~~l~~~l~~~~  432 (456)
T 2ez2_A          420 VADGIIKLYQHKE  432 (456)
T ss_dssp             HHHHHHHHHHTGG
T ss_pred             HHHHHHHHHhhhh
Confidence            9999999987654

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.97  E-value=1.4e-29  Score=239.22  Aligned_cols=345  Identities=12%  Similarity=0.044  Sum_probs=225.6

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCC-CCEEEcCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSP-EDVYLTLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~-~~i~~~~g~~~a~~   87 (387)
                      .+++.+-+.+....++ .+|.+.+++.+++...  .+|+...+..++++.+++++.+.++.  .. +++++|+|+++|+.
T Consensus        44 ~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~~v~~~~ggsea~~  118 (439)
T 3dxv_A           44 ELIDLSGAWGAASLGY-GHPAIVAAVSAAAANP--AGATILSASNAPAVTLAERLLASFPG--EGTHKIWFGHSGSDANE  118 (439)
T ss_dssp             EEEESSTTTTTCTTCB-SCHHHHHHHHHHHHSC--SCSCSSSSEEHHHHHHHHHHHHTTTC--TTTEEEEEESSHHHHHH
T ss_pred             EEEECCCchhhccCCC-CCHHHHHHHHHHHHhc--cCccccccCCHHHHHHHHHHHHhCCC--CCCCEEEEeCCHHHHHH
Confidence            3456555544333233 7899999999998764  34554456667888888888776542  33 69999999999999


Q ss_pred             HHHHhh--cCCCCeEEEcCCCCcchHHHhhccCCCce---------------eeeeccCCCCCccC-----ChhhHHHhh
Q 038416           88 ISLSVL--ARPGANILIPRPGYPLYEIHAAGSNNNLE---------------ARHYDLLPEKRWEV-----DLDGVEALA  145 (387)
Q Consensus        88 ~~~~~l--~~~g~~vl~~~p~~~~~~~~~~~~~~g~~---------------~~~~~~~~~~~~~~-----~~~~l~~~~  145 (387)
                      .+++++  ..+++.|++.+|+|+++...+.  ..+..               +..++.+.  .+..     |+++|++++
T Consensus       119 ~al~~~~~~~~~~~vi~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~le~~l  194 (439)
T 3dxv_A          119 AAYRAIVKATGRSGVIAFAGAYHGCTVGSM--AFSGHSVQADAAKADGLILLPYPDPYRP--YRNDPTGDAILTLLTEKL  194 (439)
T ss_dssp             HHHHHHHHHHSCCEEEEETTCCCCSSHHHH--CC-------------CEEEECCCCSSSC--BTTBTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCEEEEECCCCCCCcHHHH--hhcCCCchhhccccCCCCCCcEEcCCCc--ccccccHHHHHHHHHHHH
Confidence            999985  2356789999999987655444  33221               12233221  1111     689999988


Q ss_pred             ----ccCceEEEEeCCCCCccccC-CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcc
Q 038416          146 ----DENTVAIVIINPGNPCGNVF-SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISK  220 (387)
Q Consensus       146 ----~~~~~~v~l~~p~nptG~~~-~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK  220 (387)
                          .+++++++++.++|++|.+. +.+++++|.++|++||+++|+||+|+++...+... .+..+....+   +.|+||
T Consensus       195 ~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~-~~~~~~~~~d---i~s~sK  270 (439)
T 3dxv_A          195 AAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLH-CFEHEGFVPD---ILVLGK  270 (439)
T ss_dssp             HTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSS-GGGGTTCCCS---EEEECG
T ss_pred             HhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh-HHHhcCCCCC---EEEEcc
Confidence                44566677666677888865 45559999999999999999999999876555322 1222222122   238999


Q ss_pred             cccccccceEEEEeeCCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhh
Q 038416          221 RWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIK  299 (387)
Q Consensus       221 ~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  299 (387)
                      +++ +|+|+||+++++        ++++.+.... ..++ .+++++.++.++++...+   ++..++++++++.+++.|+
T Consensus       271 ~~~-~G~riG~~~~~~--------~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~---~~~~~~~~~~~~~~~~~l~  337 (439)
T 3dxv_A          271 GLG-GGLPLSAVIAPA--------EILDCASAFAMQTLH-GNPISAAAGLAVLETIDR---DDLPAMAERKGRLLRDGLS  337 (439)
T ss_dssp             GGG-TTSCCEEEEEEH--------HHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHH
T ss_pred             hhc-CCcceEEEEECH--------HHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHH
Confidence            987 599999999976        6766665542 2345 788888888887764322   2233444444444444444


Q ss_pred             ----cCCCCCCCCCCCceEEEEEecCcccc---cCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHH
Q 038416          300 ----EIPCITCPVKPQGAMFVMVKLNVSML---EDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLE  370 (387)
Q Consensus       300 ----~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~  370 (387)
                          .++.+. . .+..|.|+++.+.....   +......++...++ ++||.+.|+..+  ++++||++  ..++++++
T Consensus       338 ~~~~~~~~~~-~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~--~~~iRi~~~~~~t~e~i~  412 (439)
T 3dxv_A          338 ELAKRHPLIG-D-IRGRGLACGMELVCDRQSREPARAETAKLIYRAY-QLGLVVYYVGMN--GNVLEFTPPLTITETDIH  412 (439)
T ss_dssp             HHHHHCTTEE-E-EEEETTEEEEEEEEETTTTEECHHHHHHHHHHHH-HHTEECEEESTT--SCEEEECCCTTCCHHHHH
T ss_pred             HHHHhCCCeE-E-EEEEEEEEEEEEecCccccCCCHHHHHHHHHHHH-HCCcEEeecCCC--CCEEEEECCCCCCHHHHH
Confidence                344433 2 34456677776621100   01112345666664 559999987532  48999987  45899999


Q ss_pred             HHHHHHHHHHHHhh
Q 038416          371 DGLERIKAFCQRHA  384 (387)
Q Consensus       371 ~~~~~l~~~~~~~~  384 (387)
                      +++++|+++++++.
T Consensus       413 ~~l~~l~~~l~~~~  426 (439)
T 3dxv_A          413 KALDLLDRAFSELS  426 (439)
T ss_dssp             HHHHHHHHHHHTGG
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998764

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.97  E-value=9.7e-30  Score=236.98  Aligned_cols=316  Identities=14%  Similarity=0.130  Sum_probs=216.7

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc-------CCCC
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA-------RPGA   98 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-------~~g~   98 (387)
                      .+|.+.+++++++..... .+.  ....++++.+++++.+..+    .+++++++|+++|+..+++.+.       .+++
T Consensus        53 ~~p~v~~a~~~~~~~~~~-~~~--~~~~~~~~~l~~~la~~~~----~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~  125 (395)
T 3nx3_A           53 NHAKFNAKIKAQVDKLLH-TSN--LYYNENIAAAAKNLAKASA----LERVFFTNSGTESIEGAMKTARKYAFNKGVKGG  125 (395)
T ss_dssp             SCHHHHHHHHHHHTTCSC-CCT--TSBCHHHHHHHHHHHHHHT----CSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTC
T ss_pred             CCHHHHHHHHHHHHhccc-ccc--ccCCHHHHHHHHHHHHhcC----CCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCC
Confidence            589999999999875321 121  1223444555555544332    5799999999999999998875       3479


Q ss_pred             eEEEcCCCCcchHHHhhccCCCc-------------eeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCcccc-
Q 038416           99 NILIPRPGYPLYEIHAAGSNNNL-------------EARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNV-  164 (387)
Q Consensus        99 ~vl~~~p~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~-  164 (387)
                      +|+++.|+|+++.....  ..+.             ++..++.       .|+++|+++++++++++++..++|++|.. 
T Consensus       126 ~vi~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~~~~v~~~~~~~~~G~~~  196 (395)
T 3nx3_A          126 QFIAFKHSFHGRTLGAL--SLTANEKYQKPFKPLISGVKFAKY-------NDISSVEKLVNEKTCAIILESVQGEGGINP  196 (395)
T ss_dssp             EEEEETTCCCCSSHHHH--TTCCCHHHHGGGCSCCSCEEEECT-------TCHHHHHTTCCTTEEEEEEESEECTTSCEE
T ss_pred             EEEEEcCCcCCCCHHHH--hhcCCcccccccCCCCCCcEEeCC-------CCHHHHHHhccCCeEEEEEeCccCCCCccc
Confidence            99999999988754444  3322             2222221       27899999998888888888777777776 


Q ss_pred             CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccch
Q 038416          165 FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNS  244 (387)
Q Consensus       165 ~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~  244 (387)
                      ++.+++++|.++|++||+++|+||+|.++...+... ....++.   ...+.|+||.++. |+|+||+++++        
T Consensus       197 ~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~-~~~~~~~---~~d~~t~sK~~~~-G~~~G~~~~~~--------  263 (395)
T 3nx3_A          197 ANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFF-AYEHAQI---LPDIMTSAKALGC-GLSVGAFVINQ--------  263 (395)
T ss_dssp             CCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGGGTC---CCSEEEECGGGTT-TSCCEEEEECH--------
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcch-hHHhcCC---CCCEEEecccccC-CCceEEEEEch--------
Confidence            778889999999999999999999999876554322 1112221   1224578999875 89999999976        


Q ss_pred             hH-HHHHHhhh-hccCCcchHHHHHHHHHhhhcc-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecC
Q 038416          245 GF-VDSIKGCL-NAASHPVTFIQAAVPRIVDETN-EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLN  321 (387)
Q Consensus       245 ~~-~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~  321 (387)
                      ++ ++.+.... ..+++.+++++.++.++++... +...++..+.....++.+.+.+..+|.+. . .+..|.++++.++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~g~~~~~~~~  341 (395)
T 3nx3_A          264 KVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCK-K-RKGLGFMQGLSLD  341 (395)
T ss_dssp             HHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEE-E-EEEETTEEEEEEC
T ss_pred             hhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeE-E-EEeEEEEEEEEeC
Confidence            66 66665543 2456778888888888877432 22333333444444445544444455443 2 2345678888776


Q ss_pred             cccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHHHH
Q 038416          322 VSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       322 ~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~  382 (387)
                      ..     .+..++...+ .++||.+.++.    .+++||++  ..+++++++++++|++++++
T Consensus       342 ~~-----~~~~~~~~~l-~~~Gi~v~~~~----~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  394 (395)
T 3nx3_A          342 KS-----VKVAKVIQKC-QENALLLISCG----ENDLRFLPPLILQKEHIDEMSEKLRKALKS  394 (395)
T ss_dssp             TT-----SCHHHHHHHH-HHTTEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             Cc-----chHHHHHHHH-HHCCCEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            42     1355666666 56699999874    68999987  45899999999999998864

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.97  E-value=3.8e-29  Score=233.23  Aligned_cols=288  Identities=15%  Similarity=0.126  Sum_probs=204.0

Q ss_pred             CcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhh--ccCCCceeeeecc
Q 038416           51 GVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAA--GSNNNLEARHYDL  128 (387)
Q Consensus        51 ~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~--~~~~g~~~~~~~~  128 (387)
                      ...+|++.+++++        ..+++++++|+++|+..++.+++++||+|+++.|+|+++...+.  ....|.++..++.
T Consensus        82 ~~~~l~~~la~~~--------g~~~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~  153 (414)
T 3ndn_A           82 TVSVFEERLRLIE--------GAPAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDG  153 (414)
T ss_dssp             HHHHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT
T ss_pred             HHHHHHHHHHHHH--------CCCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCC
Confidence            4456677777766        23688999999999999999999999999999999999877665  0038999988876


Q ss_pred             CCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC
Q 038416          129 LPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS  208 (387)
Q Consensus       129 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~  208 (387)
                      +       |++++++++++++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|+...+.    .++ .+. 
T Consensus       154 ~-------d~~~l~~ai~~~t~~v~le~p~NptG~~~~---l~~i~~la~~~g~~livDe~~~~~~~~----~~~-~~g-  217 (414)
T 3ndn_A          154 D-------DLSQWERALSVPTQAVFFETPSNPMQSLVD---IAAVTELAHAAGAKVVLDNVFATPLLQ----QGF-PLG-  217 (414)
T ss_dssp             T-------CHHHHHHHTSSCCSEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHC----CCG-GGT-
T ss_pred             C-------CHHHHHHhcCCCCeEEEEECCCCCCCcccc---HHHHHHHHHHcCCEEEEECCCcccccC----Cch-hcC-
Confidence            3       789999999999999999999999999977   888999999999999999999853221    112 122 


Q ss_pred             CccEEEEecCcccccccc-cceEEEEeeCCCCcccchhHHH-HHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHH
Q 038416          209 IVPVITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGFVD-SIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIG  285 (387)
Q Consensus       209 ~~~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  285 (387)
                        ..+++.|+||.++.+| +++|++++++        +.+. .++... ......++...+.+...++.     +..+.+
T Consensus       218 --~div~~S~sK~l~~~G~~~~G~vv~~~--------~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~~-----l~~r~~  282 (414)
T 3ndn_A          218 --VDVVVYSGTKHIDGQGRVLGGAILGDR--------EYIDGPVQKLMRHTGPAMSAFNAWVLLKGLET-----LAIRVQ  282 (414)
T ss_dssp             --CSEEEEETTTTTTCSSCCCCEEEEECH--------HHHTTHHHHHHHHHCCCCCHHHHHHHHHHGGG-----HHHHHH
T ss_pred             --CCeEeccCCccccCCCCceEEEEEECH--------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-----HHHHHH
Confidence              2388999999998888 8999999875        4444 444332 23444555554444444433     566677


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCC----------------ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcC
Q 038416          286 LLKETADICYERIKEIPCITCPVKPQ----------------GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPG  349 (387)
Q Consensus       286 ~~~~~~~~~~~~l~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g  349 (387)
                      +..++++.+.+.|++.|.+..+..|.                .|.++++.++............++..+ +..++.+..|
T Consensus       283 ~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l-~~~~~~~s~G  361 (414)
T 3ndn_A          283 HSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKM-RLIDISNNLG  361 (414)
T ss_dssp             HHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHC-SSSEECSCCS
T ss_pred             HHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhC-ccceEcCCCC
Confidence            77888888889998877655343443                467888888531000001233444443 5556666666


Q ss_pred             CccC-----------------------CCCeEEEEeeCChHhHHHHHHHHHHHH
Q 038416          350 RTVG-----------------------MKNWLRIAFAAEPATLEDGLERIKAFC  380 (387)
Q Consensus       350 ~~~~-----------------------~~~~~Ri~~~~~~e~~~~~~~~l~~~~  380 (387)
                      +.+.                       .++++|+|++.  |+.+.+++.|.+++
T Consensus       362 ~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~--e~~~dli~dl~~al  413 (414)
T 3ndn_A          362 DAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL--EDTDDLIADIDRAL  413 (414)
T ss_dssp             CSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred             CCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc--CCHHHHHHHHHHhh
Confidence            5431                       14689999987  66666677776665

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.97  E-value=3e-30  Score=237.10  Aligned_cols=299  Identities=12%  Similarity=0.064  Sum_probs=203.7

Q ss_pred             CCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCC--eEEEcCCCCcchHH---HhhccC
Q 038416           44 NCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGA--NILIPRPGYPLYEI---HAAGSN  118 (387)
Q Consensus        44 ~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~--~vl~~~p~~~~~~~---~~~~~~  118 (387)
                      ..|+...+..+|++.++++++      .  +..++++|+++++..++.++.++||  .|+++.+.|.....   ...  .
T Consensus        41 ~~y~~~~~~~~l~~~la~~~~------~--~~~i~~~~G~~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~~~~~--~  110 (357)
T 3lws_A           41 DQYGTGAIIEPFEQKFADVLG------M--DDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKE--L  110 (357)
T ss_dssp             EETTEETTHHHHHHHHHHHHT------C--SEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHH--H
T ss_pred             ccccCChHHHHHHHHHHHHhC------C--CcEEEecCcHHHHHHHHHHHhhcCCCcEEEecccceeeeeccchhhh--c
Confidence            356665688999999999983      2  3445557888999999999988887  56666665543322   334  4


Q ss_pred             CCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCc-cccCCHHHHHHHHHHHHhcCcEEeecccccc--ccc
Q 038416          119 NNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPC-GNVFSYQHLQKIARTARNLGIIVIADEVYNH--LAF  195 (387)
Q Consensus       119 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~npt-G~~~~~~~~~~l~~~~~~~~~~li~D~~~~~--~~~  195 (387)
                      .|.++..++.   +++.+|+++++++.  +++++++++|+||| |.+++.+++++|+++|++||+++|+|++|..  ..+
T Consensus       111 ~g~~~~~v~~---~~~~~d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~  185 (357)
T 3lws_A          111 HPIETILVGA---ADRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPY  185 (357)
T ss_dssp             SSCEEEECSC---TTSCCCHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHH
T ss_pred             cCcEEEEecC---CCCCcCHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhh
Confidence            5778777763   34478999999874  48999999999998 9999999999999999999999999999872  111


Q ss_pred             CCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhh-ccCCc--chHHHHHHHHHh
Q 038416          196 GSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLN-AASHP--VTFIQAAVPRIV  272 (387)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~l  272 (387)
                      .+.....+..  . .. +++.|+||+++.++  .||+++++        ++++.+..... .....  ....+.++...+
T Consensus       186 ~~~~~~~~~~--~-~d-~~~~s~sK~~~~~~--gg~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  251 (357)
T 3lws_A          186 YEKTAAEIAG--L-FD-SIYISFYKGLGGIA--GAILAGPA--------AFCQTARIWKRRYGGDLISLYPYIVSADYYY  251 (357)
T ss_dssp             HTCCHHHHHT--T-SS-EEEEESSSTTCCSS--CEEEEECH--------HHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH
T ss_pred             cCCChHHHHh--c-CC-EEEEeccccCCCCc--eEEEEcCH--------HHHHHHHHHHHHhcCCcccchHHHHHHHHHH
Confidence            1222222211  1 11 44789999983332  29988865        67887765532 22121  222233333334


Q ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCcc
Q 038416          273 DETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTV  352 (387)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~  352 (387)
                      +.    +. +..+++.++++.+.+.|+++|++.+...|..++++|++++....   .+..++.. .+.++||.+.||..+
T Consensus       252 ~~----~~-~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~l~~~Gi~v~~g~~~  322 (357)
T 3lws_A          252 EL----RK-DRMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAA---DISPKLEQ-VQEETGLGFVGYLVD  322 (357)
T ss_dssp             HH----HT-TCHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCHH---HHHHHHHH-HHHHHCEESCSCCEE
T ss_pred             HH----HH-HHHHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCChH---HHHHHHHH-HHHhcCeEEeccccc
Confidence            32    22 23344567788889999998888852356778899998864210   01334444 457779999999766


Q ss_pred             CC-CCeEEEEee-----CChHhHHHHHHHHHHHH
Q 038416          353 GM-KNWLRIAFA-----AEPATLEDGLERIKAFC  380 (387)
Q Consensus       353 ~~-~~~~Ri~~~-----~~~e~~~~~~~~l~~~~  380 (387)
                      .. ..++|++++     .+.+++++++++|.+++
T Consensus       323 ~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al  356 (357)
T 3lws_A          323 KDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF  356 (357)
T ss_dssp             CSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred             CCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence            52 238999985     46789999999998764

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.97  E-value=1.2e-29  Score=239.33  Aligned_cols=327  Identities=12%  Similarity=0.034  Sum_probs=211.7

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC--CCCeEEEc
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR--PGANILIP  103 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--~g~~vl~~  103 (387)
                      .+|.+.+++++++.......|+. ....+|++.+++++      + +.++|++++|+++++..+++.+..  ++++|+++
T Consensus        72 ~~p~v~~a~~~~~~~~~~~~~~~-~~~~~l~~~la~~~------~-~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~  143 (434)
T 3l44_A           72 AHPHITKAITTAAENGVLYGTPT-ALEVKFAKMLKEAM------P-ALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKF  143 (434)
T ss_dssp             TCHHHHHHHHHHHHHCSCCSSCC-HHHHHHHHHHHHHC------T-TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             CCHHHHHHHHHHHHhCcCCCCCC-HHHHHHHHHHHHhC------C-CCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEE
Confidence            58999999999887643334443 34456667776665      2 578999999999999999998764  67899999


Q ss_pred             CCCCcchHHHhhccCC-CceeeeeccCCCCCc------------cCChhhHHHhhcc--CceEEEEeCC-CCCccccC-C
Q 038416          104 RPGYPLYEIHAAGSNN-NLEARHYDLLPEKRW------------EVDLDGVEALADE--NTVAIVIINP-GNPCGNVF-S  166 (387)
Q Consensus       104 ~p~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~------------~~~~~~l~~~~~~--~~~~v~l~~p-~nptG~~~-~  166 (387)
                      .|+|+++...+.  .. |............+.            .-|+++|+++++.  ...++++++| +|++|... +
T Consensus       144 ~~~yhg~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~  221 (434)
T 3l44_A          144 AGCYHGHSDLVL--VAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPK  221 (434)
T ss_dssp             TTCCCCSSGGGG--BC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCC
T ss_pred             cCccCCCcHHHH--hhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCC
Confidence            999998665444  32 222111111100000            0178999988863  3344555555 55666655 8


Q ss_pred             HHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          167 YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       167 ~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      ++++++|.++|++||+++|+||+|.+| ..+... .+..+...   ..+.++||.++ +|+|+||+++++        ++
T Consensus       222 ~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~-~~~~~~~~---~di~t~sK~~~-~G~~iG~~~~~~--------~i  287 (434)
T 3l44_A          222 PGFLEKVNELVHEAGALVIYDEVITAF-RFMYGG-AQDLLGVT---PDLTALGKVIG-GGLPIGAYGGKK--------EI  287 (434)
T ss_dssp             TTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSSC-HHHHHTCC---CSEEEEEGGGG-TTSSCEEEEECH--------HH
T ss_pred             HHHHHHHHHHHHHcCCEEEEeccccce-eccccH-HHHHcCCC---CCeeehhhhhc-CCcCeeeEEEcH--------HH
Confidence            888999999999999999999999987 444321 11112211   11457899987 799999998865        67


Q ss_pred             HHHHHhh----hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc----CCCCCCCCCCCceEEEEE
Q 038416          247 VDSIKGC----LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE----IPCITCPVKPQGAMFVMV  318 (387)
Q Consensus       247 ~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~g~~~~~  318 (387)
                      ++.+...    ...+++.+++++.++.++++...+   ++..++++++++.+++.|++    ++.+. . .+..|.++++
T Consensus       288 ~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~-~~~~g~~~~~  362 (434)
T 3l44_A          288 MEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ---EGLYEKLDELGATLEKGILEQAAKHNIDI-T-LNRLKGALTV  362 (434)
T ss_dssp             HTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHTTCCE-E-EEEETTEEEE
T ss_pred             HHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHHHHHHhCCCCE-E-EEeeccEEEE
Confidence            7766552    123567888898888888774322   22333444444444444443    43222 1 2345667777


Q ss_pred             ecCcccc--------cCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHHhhhc
Q 038416          319 KLNVSML--------EDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAKK  386 (387)
Q Consensus       319 ~~~~~~~--------~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~~~  386 (387)
                      .+.....        +......++...+ .++||.+.|+.    .+.+|+++..+++++++++++|++++++++++
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~----~~~~rl~~~~t~e~i~~~l~~l~~~l~~~~~~  433 (434)
T 3l44_A          363 YFTTNTIEDYDAAQDTDGEMFGKFFKLM-LQEGVNLAPSK----YEAWFLTTEHTKEDIEYTIEAVGRAFAALADN  433 (434)
T ss_dssp             EESSSCCCSHHHHHHSCHHHHHHHHHHH-HHTTEECCSST----TCCEECCTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEecCcccchhhccccCHHHHHHHHHHH-HHCCeEEeecC----CCcEEEecccCHHHHHHHHHHHHHHHHHHHhc
Confidence            6632111        0000123455555 55699999874    35789987889999999999999999887653

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.97  E-value=4.1e-30  Score=236.65  Aligned_cols=316  Identities=12%  Similarity=0.060  Sum_probs=220.7

Q ss_pred             CCCcHHHHHHHHHHhcCCC--------CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCC-C-EEEcCChHHHHHHHHHhh
Q 038416           24 LSDSTVAEDAVVDALRTAH--------YNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-D-VYLTLGCSQAIEISLSVL   93 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~--------~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~-~-i~~~~g~~~a~~~~~~~l   93 (387)
                      .++|+.+++++.+.+.+..        ..++.  .+..++++.+.+.+.+.+|.  +++ + +++|+|+++++..++.++
T Consensus        13 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~la~~~g~--~~~~~~i~~t~g~t~a~~~~~~~l   88 (362)
T 2c0r_A           13 AALPLEVLERAQAEFVDYQHTGMSIMEMSHRG--AVYEAVHNEAQARLLALLGN--PTGYKVLFIQGGASTQFAMIPMNF   88 (362)
T ss_dssp             CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTS--HHHHHHHHHHHHHHHHHTTC--CSSEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHhhhhhcCccccccCCCc--HHHHHHHHHHHHHHHHHhCC--CCCcEEEEECCCchHHHHHHHHhc
Confidence            5899999999999875320        11121  12344566666666665553  443 5 567899999999999999


Q ss_pred             cCCCCeEEEcCCCCcch--HHHhhccCCCceeeeeccCCC--CCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHH
Q 038416           94 ARPGANILIPRPGYPLY--EIHAAGSNNNLEARHYDLLPE--KRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQH  169 (387)
Q Consensus        94 ~~~g~~vl~~~p~~~~~--~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~  169 (387)
                      +++||+|+++.+.+++.  ...++  ..| ++..++++.+  .+..+|.++++  +++++++|++++|+||||..++  +
T Consensus        89 ~~~gd~vl~~~~~~~~~~~~~~~~--~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~~t~~v~~~~~~n~tG~~~~--~  161 (362)
T 2c0r_A           89 LKEGQTANYVMTGSWASKALKEAK--LIG-DTHVAASSEASNYMTLPKLQEIQ--LQDNAAYLHLTSNETIEGAQFK--A  161 (362)
T ss_dssp             CCTTCEEEEEECSHHHHHHHHHHH--HHS-CEEEEEECGGGTTCSCCCGGGCC--CCTTEEEEEEESEETTTTEECS--S
T ss_pred             CCCCCeEEEEecCcHhHHHHHHHH--HhC-CeEEEecccccccccCCCHHHcc--cCCCcCEEEEeCCcCccceecc--c
Confidence            99999999887776552  35566  678 8888887532  22234665543  6778999999999999999754  2


Q ss_pred             HHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHH
Q 038416          170 LQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDS  249 (387)
Q Consensus       170 ~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~  249 (387)
                      +++|      +|+++|+|++|+.+..    ..++..+     .+++.|+||+++++|  +||+++++        ++++.
T Consensus       162 l~~i------~~~~vivD~a~~~~~~----~~~~~~~-----d~~~~s~~K~~g~~G--~G~l~~~~--------~~~~~  216 (362)
T 2c0r_A          162 FPDT------GSVPLIGDMSSDILSR----PFDLNQF-----GLVYAGAQKNLGPSG--VTVVIVRE--------DLVAE  216 (362)
T ss_dssp             CCCC------TTSCEEEECTTTTTSS----CCCGGGC-----SEEEEETTTTTCCSS--CEEEEEEG--------GGSSS
T ss_pred             cccc------CCCEEEEEChhhccCC----ccchhHC-----cEEEEeccccccCcC--cEEEEEcH--------HHHhh
Confidence            5554      7999999999986431    1223222     277889999998888  89999976        23222


Q ss_pred             HHh-------------hhhccCCcchHHHHHHHHHhhhccHH-HHHHHHHHHHHHHHHHHHHhhcCCCC-CCCCCC--Cc
Q 038416          250 IKG-------------CLNAASHPVTFIQAAVPRIVDETNEA-FFAKIIGLLKETADICYERIKEIPCI-TCPVKP--QG  312 (387)
Q Consensus       250 ~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~--~~  312 (387)
                      +..             .....++++.+.+.++..+++...+. .++++.++++++++++.+.|++++++ .....+  ..
T Consensus       217 l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~  296 (362)
T 2c0r_A          217 SPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRS  296 (362)
T ss_dssp             CCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBC
T ss_pred             ccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHcC
Confidence            221             11234577788888888888754343 67888999999999999999988535 532221  23


Q ss_pred             eEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHh
Q 038416          313 AMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       313 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                      +.++++.++..     .+..++...| .++||.+.+|..+  .+++|||++  .++++++++++.|+++++++
T Consensus       297 ~~~~~~~~~~~-----~~~~~~~~~L-~~~gi~~~~g~~~--~~~iRis~~~~~~~e~i~~l~~~l~~~~~~~  361 (362)
T 2c0r_A          297 DMNITFRLASE-----ELEKEFVKAS-EQEGFVGLKGHRS--VGGLRASIYNAVPYESCEALVQFMEHFKRSR  361 (362)
T ss_dssp             SSEEEEECSCH-----HHHHHHHHHH-HHTTEESCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCc-----chHHHHHHHH-HHCCCeeccCCCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            34566666521     1345666665 6679988887655  467999996  47899999999999988765

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.97  E-value=2.2e-30  Score=238.23  Aligned_cols=313  Identities=14%  Similarity=0.084  Sum_probs=218.9

Q ss_pred             CCcHHHHHHHHHHhcCC---CCCCCCC---CCC----cHHHHHHHHHHHhhcCCCCCCCCCEEEcCCh-HHHHHHHHHhh
Q 038416           25 SDSTVAEDAVVDALRTA---HYNCYSP---TLG----VPSARRGIADYLNRDLPYKLSPEDVYLTLGC-SQAIEISLSVL   93 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~---~~~~y~~---~~~----~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~-~~a~~~~~~~l   93 (387)
                      ++|+.+++++.+.+...   ....|..   ..+    ..++|+.+++++    +.. ++++|++|+|+ ++|+..++.++
T Consensus        13 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~-~~~~v~~~~g~gt~al~~~~~~l   87 (360)
T 1w23_A           13 ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELL----QIP-NDYQILFLQGGASLQFTMLPMNL   87 (360)
T ss_dssp             CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHH----TCC-TTEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHh----CCC-CCceEEEECCcchHHHHHHHHHh
Confidence            78899999999987642   0111111   122    345566666655    322 35699999998 99999999998


Q ss_pred             cCC---CCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHH-hhccCceEEEEeCCCCCccccCCHHH
Q 038416           94 ARP---GANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEA-LADENTVAIVIINPGNPCGNVFSYQH  169 (387)
Q Consensus        94 ~~~---g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~v~l~~p~nptG~~~~~~~  169 (387)
                      +.+   ||.|+++.++|..+ ..++  ..| +++.++++++++ .+|++++++ ++++++++|++++|+||||.+++  +
T Consensus        88 ~~~~~~g~~vi~~~~~~~~~-~~~~--~~g-~~~~v~~~~~~~-~~d~~~l~~~~i~~~~k~v~~~~~~nptG~~~~--~  160 (360)
T 1w23_A           88 LTKGTIGNYVLTGSWSEKAL-KEAK--LLG-ETHIAASTKANS-YQSIPDFSEFQLNENDAYLHITSNNTIYGTQYQ--N  160 (360)
T ss_dssp             CCTTCEEEEEECSHHHHHHH-HHHH--TTS-EEEEEEECGGGT-SCSCCCGGGCCCCTTEEEEEEESEETTTTEECS--S
T ss_pred             cCCCCcccEEEecchhHHHH-HHHH--HhC-CeEEeecccccC-cCCccchHhhccCCCCCEEEEeCCCCCcceecc--c
Confidence            865   56677776666543 3456  789 999998864333 378899998 88888999999999999999987  3


Q ss_pred             HHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHH
Q 038416          170 LQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDS  249 (387)
Q Consensus       170 ~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~  249 (387)
                      +.      +++|+++|+|++|+.+..    ..++..+     .+++.|+||.++++|  +||+++++        +++++
T Consensus       161 i~------~~~~~~li~D~a~~~~~~----~~~~~~~-----di~~~s~sK~~~~~G--~G~~~~~~--------~~~~~  215 (360)
T 1w23_A          161 FP------EINHAPLIADMSSDILSR----PLKVNQF-----GMIYAGAQKNLGPSG--VTVVIVKK--------DLLNT  215 (360)
T ss_dssp             CC------CCCSSCEEEECTTTTTSS----CCCGGGC-----SEEEEETTTTTSCTT--CEEEEEEH--------HHHCS
T ss_pred             cc------ccCCceEEEechhhcCCC----CcCcccC-----CEEEEEcccccCCCC--cEEEEEcH--------HHHhh
Confidence            32      279999999999986432    1223333     278999999988766  89999875        44443


Q ss_pred             HHhhh-------------hccCCcchHHHHHHHHHhhhccHH-HHHHHHHHHHHHHHHHHHHhhcCCCC-CCCCCC--Cc
Q 038416          250 IKGCL-------------NAASHPVTFIQAAVPRIVDETNEA-FFAKIIGLLKETADICYERIKEIPCI-TCPVKP--QG  312 (387)
Q Consensus       250 ~~~~~-------------~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~--~~  312 (387)
                      +....             ....+++...+.++..+++...+. ++++..++++++++.+.+.|++++++ .....|  .+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~  295 (360)
T 1w23_A          216 KVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRS  295 (360)
T ss_dssp             CCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBC
T ss_pred             cccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCchhcc
Confidence            33211             112345666666666666643333 67888999999999999999988655 322123  23


Q ss_pred             eEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHH
Q 038416          313 AMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       313 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~  382 (387)
                      ++++|+.++..     .+..++...+ .++||.+.+|..+  .+++|++++  .+++++++++++|++++++
T Consensus       296 ~~~~~~~~~~~-----~~~~~~~~~l-~~~gi~~~~~~~~--~~~iRis~~~~~~~~~i~~~~~~l~~~~~~  359 (360)
T 1w23_A          296 LMNVTFNLRNE-----ELNQQFLAKA-KEQGFVGLNGHRS--VGGCRASIYNAVPIDACIALRELMIQFKEN  359 (360)
T ss_dssp             SSEEEEECSSH-----HHHHHHHHHH-HHTTEESCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCC-----ccHHHHHHHH-HHCCeeeecCCCC--CCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence            55888887631     1234566664 6679999887653  578999996  4889999999999988764

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.97  E-value=1.1e-30  Score=240.29  Aligned_cols=316  Identities=14%  Similarity=0.046  Sum_probs=214.3

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCe--EE
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGAN--IL  101 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~--vl  101 (387)
                      ++++|.+.+++.+....   ..|.+..+..++|+.++++++      .  +..++++|+++++..++.++.++||+  |+
T Consensus        25 ~g~~p~v~~ai~~~~~~---~~~~~~~~~~~l~~~la~~~~------~--~~~i~~~~g~~a~~~a~~~~~~~g~~~vvi   93 (359)
T 3pj0_A           25 VGVLTEALQNIDDNLES---DIYGNGAVIEDFETKIAKILG------K--QSAVFFPSGTMAQQIALRIWADRKENRRVA   93 (359)
T ss_dssp             HHHHHHHTTTSCTTCBC---CBTTBSHHHHHHHHHHHHHHT------C--SEEEEESCHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             cCCCHHHHHHHHhhccc---CcccCCHHHHHHHHHHHHHhC------C--CcEEEeCCHHHHHHHHHHHHHhcCCCcEEE
Confidence            45678888888774432   345555677899999999983      2  33355688889999999999888876  55


Q ss_pred             EcCCCCcchHH---HhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCc-cccCCHHHHHHHHHHH
Q 038416          102 IPRPGYPLYEI---HAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPC-GNVFSYQHLQKIARTA  177 (387)
Q Consensus       102 ~~~p~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~npt-G~~~~~~~~~~l~~~~  177 (387)
                      ++.+.|.....   ...  ..|.+++.++.   +++.+|+++++++ .+++++|++++|+||+ |.+++.+++++|+++|
T Consensus        94 ~~~~~~~~~~~~~~~~~--~~g~~~~~v~~---~~~~~d~~~l~~~-~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~  167 (359)
T 3pj0_A           94 YHPLSHLEIHEQDGLKE--LQQITPLLLGT---ANQLLTIDDIKSL-REPVSSVLIELPQREIGGQLPAFEELEKISEYC  167 (359)
T ss_dssp             ECTTCHHHHSSTTHHHH--HHCCEEEECSC---TTSCCCHHHHHTC-SSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHH
T ss_pred             EeccceeeehhcchHHH--hcCceEEecCC---cCCCcCHHHHHhc-cCCceEEEEEecccCCCcccCCHHHHHHHHHHH
Confidence            55555433221   223  45888887765   3457899999998 7789999999999988 7999999999999999


Q ss_pred             HhcCcEEeecccccccc--cCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhh
Q 038416          178 RNLGIIVIADEVYNHLA--FGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLN  255 (387)
Q Consensus       178 ~~~~~~li~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~  255 (387)
                      ++||+++|+|++|..+.  +.+.....+.   .... +++.|+||+++.++.  |+++.++        ++++.++....
T Consensus       168 ~~~~~~li~D~a~~~~~~~~~~~~~~~~~---~~~d-~~~~s~sK~~~~~~g--g~~~~~~--------~l~~~~~~~~~  233 (359)
T 3pj0_A          168 HEQGISLHLDGARLWEITPFYQKSAEEIC---ALFD-SVYVSFYKGIGGIAG--AILAGND--------DFVQEAKIWKR  233 (359)
T ss_dssp             HHHTCEEEEEETTCGGGHHHHTCCHHHHH---TTCS-EEEEESSSTTCCSSC--EEEEECH--------HHHHHHHHHHH
T ss_pred             HHcCCEEEEECcchhcchhhhCCCHHHhh---ccCC-EEEEeccccCCCcce--EEEECCH--------HHHHHHHHHHH
Confidence            99999999999987533  1122222221   1111 455689998765532  7777754        78888876432


Q ss_pred             -ccCCc--chHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHH
Q 038416          256 -AASHP--VTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDL  332 (387)
Q Consensus       256 -~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  332 (387)
                       .....  ......+....++.    .. +..+++.++++.+.+.|++++++.+...|..++++|+.++....   .+..
T Consensus       234 ~~~~~~~~~~~~~~a~~~~l~~----~~-~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~  305 (359)
T 3pj0_A          234 RYGGDLISLYPYILSADYYFEK----RI-GKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENSAD---EIGA  305 (359)
T ss_dssp             HTTCCCSCCHHHHHHHHHHHHH----HG-GGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEESSCHH---HHHH
T ss_pred             HhCCCcchhHHHHHHHHHHHHH----HH-HHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEecCccc---hhHH
Confidence             22122  22222222233332    12 34455677888899999998888743246677788887764210   0233


Q ss_pred             HHHHHHHHhcCeEEEcCCccCC--CCeEEEEee-----CChHhHHHHHHHHHHH
Q 038416          333 EFCLKLAKEESVIILPGRTVGM--KNWLRIAFA-----AEPATLEDGLERIKAF  379 (387)
Q Consensus       333 ~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~-----~~~e~~~~~~~~l~~~  379 (387)
                      ++ .+.+.++||.+.||..|..  ..++|++++     .+.+++++++++|.+.
T Consensus       306 ~l-~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~  358 (359)
T 3pj0_A          306 IL-TKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE  358 (359)
T ss_dssp             HH-HHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence            44 4445777999999977654  357999985     4678999999998765

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.97  E-value=3.7e-28  Score=228.00  Aligned_cols=325  Identities=15%  Similarity=0.175  Sum_probs=225.9

Q ss_pred             CCC-CcHHHHHHHHHHhcCCCCCCCCCCCC----cHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh-cCC
Q 038416           23 LLS-DSTVAEDAVVDALRTAHYNCYSPTLG----VPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL-ARP   96 (387)
Q Consensus        23 ~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~----~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~   96 (387)
                      +++ .++.+.+++.+++.......|++..|    ..++++.+++++    +  .+  ++++++++++++..++.++ +++
T Consensus        10 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~----g--~~--~~i~~~~gt~al~~~~~~~~~~~   81 (418)
T 2c81_A           10 EWPQHSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFN----G--VP--YCVPTTSGSTALMLALEALGIGE   81 (418)
T ss_dssp             CSSCCCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHH----T--CS--EEEEESCHHHHHHHHHHHTTCCT
T ss_pred             CCCCCCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHh----C--CC--cEEEeCCHHHHHHHHHHHcCCCC
Confidence            444 58999999999987654434666556    456666666666    2  22  5777888899999999999 899


Q ss_pred             CCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHH
Q 038416           97 GANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIART  176 (387)
Q Consensus        97 g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~  176 (387)
                      ||+|+++.|+|.++...+.  ..|.+++.+++++ +++.+|++++++++++++++|+++   ||||...+   +++|.++
T Consensus        82 gd~Vl~~~~~~~~~~~~~~--~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~~~---~~~i~~~  152 (418)
T 2c81_A           82 GDEVIVPSLTWIATATAVL--NVNALPVFVDVEA-DTYCIDPQLIKSAITDKTKAIIPV---HLFGSMAN---MDEINEI  152 (418)
T ss_dssp             TCEEEEESSSCTHHHHHHH--HTTCEEEEECBCT-TTCSBCHHHHGGGCCTTEEEECCB---CCTTCCCC---HHHHHHH
T ss_pred             cCEEEECCCccHhHHHHHH--HcCCEEEEEecCC-CCCCcCHHHHHHhhCCCCeEEEEe---CCcCCccc---HHHHHHH
Confidence            9999999999999999999  9999999998854 356899999999998888888764   47898754   8899999


Q ss_pred             HHhcCcEEeecccccccc-cCCCCCccccccCCCccEEEEecC--cccccccccceEEEEeeCCCCcccchhHHHHHHhh
Q 038416          177 ARNLGIIVIADEVYNHLA-FGSTPYVPMGVFGSIVPVITLGSI--SKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGC  253 (387)
Q Consensus       177 ~~~~~~~li~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~s~--sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~  253 (387)
                      |+++|+++|+|++|+.+. +++..   +..+.    .+.+.||  +|.++. | ++||+++++       +++++.+...
T Consensus       153 ~~~~~~~li~D~a~~~~~~~~~~~---~~~~~----~~~~~s~s~~K~~~~-g-~~g~~~~~~-------~~l~~~~~~~  216 (418)
T 2c81_A          153 AQEHNLFVIEDCAQSHGSVWNNQR---AGTIG----DIGAFSCQQGKVLTA-G-EGGIIVTKN-------PRLFELIQQL  216 (418)
T ss_dssp             HHHTTCEEEEECTTCTTCEETTEE---TTSSS----SEEEEECCTTSSSCS-S-SCEEEEESC-------HHHHHHHHHH
T ss_pred             HHHCCCEEEEECcccccCccCCEe---ccccc----ceEEEeccCCcccCC-C-CeEEEEECC-------HHHHHHHHHH
Confidence            999999999999999865 44322   22221    1667777  999877 7 999999853       2566666543


Q ss_pred             hhcc-------------CC--c---c--------hHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 038416          254 LNAA-------------SH--P---V--------TFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCP  307 (387)
Q Consensus       254 ~~~~-------------~~--~---~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  307 (387)
                      ....             +.  .   .        ...+.++..  .  ..+.+++..++.+++++++.+.|+++|++.+.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~--~--~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~  292 (418)
T 2c81_A          217 RADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILL--D--QLQELDDKNAIREKNAMFLNDALSKIDGIKVM  292 (418)
T ss_dssp             HBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHH--H--HHTTHHHHHHHHHHHHHHHHHHHTTSTTEEEC
T ss_pred             HHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHH--H--HHHHHHHHHHHHHHHHHHHHHHhccCCCcccC
Confidence            3210             00  0   0        111222111  1  11235667777778888999999888888744


Q ss_pred             CCCCc-eEEEE----EecCcccccCCCcHHHHHHHHHHhcCeE---EEcCCccC--------------------------
Q 038416          308 VKPQG-AMFVM----VKLNVSMLEDIGDDLEFCLKLAKEESVI---ILPGRTVG--------------------------  353 (387)
Q Consensus       308 ~~~~~-g~~~~----~~~~~~~~~~~~~~~~~~~~ll~~~gi~---v~~g~~~~--------------------------  353 (387)
                      ..+.+ +...|    +.++.....+ .+..++...|.+++||.   +.+|....                          
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (418)
T 2c81_A          293 KRPPQVSRQTYYGYVFRFDPVKFGG-LNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWR  371 (418)
T ss_dssp             CCCTTEEECCCSEEEEEECGGGTTT-CCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHH
T ss_pred             CCCCCCcccccEEEEEEEccccccc-cCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccc
Confidence            34444 33222    4554210001 14566777775544999   88875210                          


Q ss_pred             ---C-------CCeEEEEe--eC-ChHhHHHHHHHHHHHHHHhhh
Q 038416          354 ---M-------KNWLRIAF--AA-EPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       354 ---~-------~~~~Ri~~--~~-~~e~~~~~~~~l~~~~~~~~~  385 (387)
                         .       .+.+|+++  .. +++|++.+++.|++++++++.
T Consensus       372 ~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~~~  416 (418)
T 2c81_A          372 GLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKFCV  416 (418)
T ss_dssp             TCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTTC-
T ss_pred             cCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhhcc
Confidence               0       14799999  46 899999999999999877643

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.97  E-value=2e-29  Score=238.00  Aligned_cols=326  Identities=14%  Similarity=0.079  Sum_probs=219.2

Q ss_pred             ccCCCCCCCCCCCCCCCcHHHHHHHHHHh---cCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHH
Q 038416           10 RHSPWPRRPLGVSLLSDSTVAEDAVVDAL---RTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI   86 (387)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~v~~a~~~~~---~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~   86 (387)
                      .+..+.|   .++++++++.+.++.....   .......|+. .+.+ +++.+++++.+.++    .+++++++|+++|+
T Consensus        91 ~i~l~~g---~~~~~~~~~~i~~a~~~~~~~~~~~~~~~Y~~-~g~~-~~~~l~~~la~~~g----~~~~i~~~sGt~al  161 (464)
T 1ibj_A           91 LVNLDNK---FDPFDAMSTPLYQTATFKQPSAIENGPYDYTR-SGNP-TRDALESLLAKLDK----ADRAFCFTSGMAAL  161 (464)
T ss_dssp             HTCCCCS---SCTTCCSSCCCCCCSBCCCSSSSCCCSCSBTT-TCCH-HHHHHHHHHHHHHT----CSEEEEESSHHHHH
T ss_pred             EEECCCC---CCCCCCCCccHHhhhhhhhhcccccCCccccC-CCCH-HHHHHHHHHHHHhC----CCeEEEECCHHHHH
Confidence            3455565   1347888888887766431   1112335653 3444 67777777766554    24778888889999


Q ss_pred             HHHHHhhcCCCCeEEEcCCCCcchHHH----hhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCcc
Q 038416           87 EISLSVLARPGANILIPRPGYPLYEIH----AAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCG  162 (387)
Q Consensus        87 ~~~~~~l~~~g~~vl~~~p~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG  162 (387)
                      ..++. ++++||+|+++.|+|+++...    ++  ..|.+++.+++.       |++++++++++++++|++++|+||||
T Consensus       162 ~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~--~~G~~v~~v~~~-------d~~~l~~~i~~~tk~v~l~~p~NptG  231 (464)
T 1ibj_A          162 SAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVP--RSGVVVKRVNTT-------KLDEVAAAIGPQTKLVWLESPTNPRQ  231 (464)
T ss_dssp             HHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSG--GGTCEEEEECTT-------SHHHHHHHCCSSEEEEEECSSCTTTC
T ss_pred             HHHHH-HhCCCCEEEEECCCchhHHHHHHHHHH--HcCCEEEEeCCC-------CHHHHHHHhccCceEEEEeCCCCCCC
Confidence            98886 778999999999999988653    45  678898888752       78999999998999999999999999


Q ss_pred             ccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccc-cccceEEEEeeCCCCcc
Q 038416          163 NVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIV-PGWRLGWLVTSDPNGIL  241 (387)
Q Consensus       163 ~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~-~g~r~G~i~~~~~~~~~  241 (387)
                      .+++   +++|+++|+++|+++|+|++|....    ...++. +   +..+++.|+||+++. +|+++||+++++     
T Consensus       232 ~v~~---l~~i~~la~~~gi~livDea~~~g~----~~~~~~-~---~~div~~S~sK~~~g~~Gl~~G~l~~~~-----  295 (464)
T 1ibj_A          232 QISD---IRKISEMAHAQGALVLVDNSIMSPV----LSRPLE-L---GADIVMHSATKFIAGHSDVMAGVLAVKG-----  295 (464)
T ss_dssp             CCCC---HHHHHHHHHTTTCEEEEECTTTCTT----TCCGGG-T---TCSEEEEETTTTTTCSSCCCCEEEEECS-----
T ss_pred             Eeec---HHHHHHHHHHcCCEEEEECCCcccc----cCChhh-c---CCEEEEECCcccccCCCCCcEEEEEECh-----
Confidence            9986   8899999999999999999998521    112222 2   346899999998864 489999999974     


Q ss_pred             cchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHH----------HHhhcCCCCCCCCCC
Q 038416          242 QNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICY----------ERIKEIPCITCPVKP  310 (387)
Q Consensus       242 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~l~~~~~~~~~~~~  310 (387)
                        +++++.+..... .+...+++.++++...++... ..+++..+......+++.          +.|+++|++.+. .+
T Consensus       296 --~~l~~~l~~~~~~~g~~~~~~~~~a~~~al~~~~-~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~-~~  371 (464)
T 1ibj_A          296 --EKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMA-LRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLH-FS  371 (464)
T ss_dssp             --HHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTHH-HHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHH-TT
T ss_pred             --HHHHHHHHHHHHhcCCCCCHHHHHHHHhchhhHH-HHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHH-hc
Confidence              256677765543 345567778887777766421 112222222222222322          123333444422 23


Q ss_pred             C---ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCC------------cc----------CC-CCeEEEEeeC
Q 038416          311 Q---GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGR------------TV----------GM-KNWLRIAFAA  364 (387)
Q Consensus       311 ~---~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~------------~~----------~~-~~~~Ri~~~~  364 (387)
                      .   .|.++++.++.     ......++..+ +..||.+.+|.            .+          +. ++++|++++.
T Consensus       372 ~~~g~g~~~~~~l~~-----~~~~~~~~~~L-~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~  445 (464)
T 1ibj_A          372 QAKGAGSVFSFITGS-----VALSKHLVETT-KYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI  445 (464)
T ss_dssp             TCSCCCSEEEEECSC-----HHHHHHHHHHC-SSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS
T ss_pred             cCCCCceEEEEEECC-----HHHHHHHHHhc-CcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC
Confidence            2   35577777741     00122344444 55688888775            11          12 4689999988


Q ss_pred             ChHhHHHHHHHHHHHHHH
Q 038416          365 EPATLEDGLERIKAFCQR  382 (387)
Q Consensus       365 ~~e~~~~~~~~l~~~~~~  382 (387)
                        |++++++++|++++++
T Consensus       446 --edi~~li~~L~~al~~  461 (464)
T 1ibj_A          446 --EDVDDLISDLDIAFKT  461 (464)
T ss_dssp             --SCHHHHHHHHHHHHHS
T ss_pred             --CCHHHHHHHHHHHHhh
Confidence              8999999999998865

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.97  E-value=1.2e-29  Score=240.34  Aligned_cols=332  Identities=14%  Similarity=0.099  Sum_probs=213.0

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc-----C---CC
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA-----R---PG   97 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-----~---~g   97 (387)
                      .+|.+.+++.+++.....   ....+..+++..+++++.+.++  ...+ |++|+|+++|++.+++.+.     .   ++
T Consensus        66 ~~p~v~~A~~~~~~~~~~---~~~~~~~~~~~~la~~l~~~~~--~~~~-v~~~~ggseA~~~al~~~~~~~~~~g~~~~  139 (452)
T 3n5m_A           66 GRKELAEAAYKQLQTLSY---FPMSQSHEPAIKLAEKLNEWLG--GEYV-IFFSNSGSEANETAFKIARQYYAQKGEPHR  139 (452)
T ss_dssp             CCHHHHHHHHHHHTTCCC---CCTTSEEHHHHHHHHHHHHHHT--SCEE-EEEESSHHHHHHHHHHHHHHHHHTTTCTTC
T ss_pred             CCHHHHHHHHHHHHhcCC---cccccCCHHHHHHHHHHHHhCC--CCce-EEEeCchHHHHHHHHHHHHHHHHhcCCCCC
Confidence            479999999999875321   2223334555666666555443  3334 9999999999999999987     4   67


Q ss_pred             CeEEEcCCCCcchHHHhhccCCCce-------------eeeeccCCCCCccC-C---------hhhHHHhhc----cCce
Q 038416           98 ANILIPRPGYPLYEIHAAGSNNNLE-------------ARHYDLLPEKRWEV-D---------LDGVEALAD----ENTV  150 (387)
Q Consensus        98 ~~vl~~~p~~~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~-~---------~~~l~~~~~----~~~~  150 (387)
                      ++|++..|+|+++.....  ..+..             +..++......... |         +++|+++++    ++++
T Consensus       140 ~~vi~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~  217 (452)
T 3n5m_A          140 YKFMSRYRGYHGNTMATM--AATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIA  217 (452)
T ss_dssp             CEEEEETTCCCCSSHHHH--HSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEE
T ss_pred             CEEEEECCCcCCCCHHHH--hcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEE
Confidence            999999999998654444  22221             22222110000000 1         788998886    4556


Q ss_pred             EEEEeCC-CCCccccC-CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccc-c
Q 038416          151 AIVIINP-GNPCGNVF-SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPG-W  227 (387)
Q Consensus       151 ~v~l~~p-~nptG~~~-~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g-~  227 (387)
                      ++++..+ +| ||..+ +.+++++|.++|++||+++|+||+|.++...|.... ...++..   ..+.++||+++. | +
T Consensus       218 ~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~-~~~~~~~---~di~t~sK~l~~-G~~  291 (452)
T 3n5m_A          218 AFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFG-FMNYDVK---PDIITMAKGITS-AYL  291 (452)
T ss_dssp             EEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSG-GGGTTCC---CSEEEECGGGGT-TSS
T ss_pred             EEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccch-hhhcCCC---CCEEeecccccC-CCc
Confidence            6666666 79 99765 778899999999999999999999999876654221 2222211   223468999876 8 9


Q ss_pred             ceEEEEeeCCCCcccchhHHHHHHh---h----hhccCCcchHHHHHHHHHhhhccH-HHHHHHHHHHHHHHHHHHHHhh
Q 038416          228 RLGWLVTSDPNGILQNSGFVDSIKG---C----LNAASHPVTFIQAAVPRIVDETNE-AFFAKIIGLLKETADICYERIK  299 (387)
Q Consensus       228 r~G~i~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~  299 (387)
                      |+||+++++        ++++.+..   .    ...+++.++++++++.++|+...+ ..+++..+.....++.+.+.++
T Consensus       292 ~ig~~~~~~--------~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~  363 (452)
T 3n5m_A          292 PLSATAVKR--------EIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIG  363 (452)
T ss_dssp             CCEEEEEEH--------HHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ceEEEEECH--------HHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence            999999976        67777743   1    124567888999998888875332 2233333333334444444444


Q ss_pred             cCCCCCCCCCCCceEEEEEecCcccccC--C--CcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEe--eCChHhHHH
Q 038416          300 EIPCITCPVKPQGAMFVMVKLNVSMLED--I--GDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAF--AAEPATLED  371 (387)
Q Consensus       300 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~--~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~--~~~~e~~~~  371 (387)
                      ++|.+..  .+..|.++++.+.......  .  ....++...+ .++||.+.|+..|..  .+++||++  ..+++++++
T Consensus       364 ~~~~~~~--~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~  440 (452)
T 3n5m_A          364 EHPLVGD--IRGKGLLVGIELVNDKETKEPIDNDKIASVVNAC-KEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAF  440 (452)
T ss_dssp             TCTTEEE--EEESSSCEEEEEEEETTTTEECCHHHHHHHHHHH-HHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHH
T ss_pred             cCCCeEE--EEEEEEEEEEEEecCCcccCCCCHHHHHHHHHHH-HHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHH
Confidence            4554432  2334556666653211000  0  0013455555 566999999875532  57999986  468999999


Q ss_pred             HHHHHHHHHHH
Q 038416          372 GLERIKAFCQR  382 (387)
Q Consensus       372 ~~~~l~~~~~~  382 (387)
                      ++++|++++++
T Consensus       441 ~l~~l~~~l~~  451 (452)
T 3n5m_A          441 VIGTLKTAMER  451 (452)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.97  E-value=7.4e-29  Score=233.42  Aligned_cols=320  Identities=13%  Similarity=0.132  Sum_probs=210.7

Q ss_pred             CCC-CcHHHHHHHHHHhcCCCCC--CCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc-----
Q 038416           23 LLS-DSTVAEDAVVDALRTAHYN--CYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA-----   94 (387)
Q Consensus        23 ~~~-~~~~v~~a~~~~~~~~~~~--~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-----   94 (387)
                      .++ .+|.+.+++.+++......  .|. .....++++.+++++        ..+++++++|+++|+..+++.+.     
T Consensus        78 ~lgh~~p~v~~ai~~~~~~~~~~~~~~~-~~~~~~l~~~la~~~--------g~~~v~~~~sGseA~~~al~~a~~~~~~  148 (433)
T 1z7d_A           78 NQGHCHPNILNAMINQAKNLTICSRAFF-SVPLGICERYLTNLL--------GYDKVLMMNTGAEANETAYKLCRKWGYE  148 (433)
T ss_dssp             TTCBTCHHHHHHHHHHHTTCSCCCTTSE-EHHHHHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHhCCCccCCcC-CHHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHHHHHHHHHHHhhh
Confidence            466 8899999999998763211  121 122345566666655        25799999999999999998864     


Q ss_pred             ----CCC-CeEEEcCCCCcchHHH-hhccCCC------------ceeeeeccCCCCCccCChhhHHHhh-ccCceEEEEe
Q 038416           95 ----RPG-ANILIPRPGYPLYEIH-AAGSNNN------------LEARHYDLLPEKRWEVDLDGVEALA-DENTVAIVII  155 (387)
Q Consensus        95 ----~~g-~~vl~~~p~~~~~~~~-~~~~~~g------------~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~l~  155 (387)
                          .+| ++|++++|+|+++... +.  ..|            .++..++.       .|+++|++++ ++++++|++.
T Consensus       149 ~~g~~~gr~~vi~~~~~yhg~~~~~~~--~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~le~~l~~~~~~~vi~e  219 (433)
T 1z7d_A          149 VKKIPENMAKIVVCKNNFSGRTLGCIS--ASTTKKCTSNFGPFAPQFSKVPY-------DDLEALEEELKDPNVCAFIVE  219 (433)
T ss_dssp             TSCCCTTCCEEEEETTC----------------------------CEEEECT-------TCHHHHHHHHTSTTEEEEEEC
T ss_pred             ccCCCCCCCeEEEEeCCcCCcchhhhc--ccCCccccccCCCCCCCeEEeCC-------CCHHHHHHHhCCCCEEEEEEE
Confidence                367 9999999999876433 22  223            12333332       2789999998 4566655544


Q ss_pred             CCCCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccc-cceEEEE
Q 038416          156 NPGNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPG-WRLGWLV  233 (387)
Q Consensus       156 ~p~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g-~r~G~i~  233 (387)
                      ..++++|.. ++.+++++|.++|++||+++|+||+|.++...+.... +..+....+   +.|+||.++ +| +|+||++
T Consensus       220 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~-~~~~~~~~d---i~t~sK~l~-~G~~~~G~v~  294 (433)
T 1z7d_A          220 PIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLC-VHHYNVKPD---VILLGKALS-GGHYPISAVL  294 (433)
T ss_dssp             SSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSG-GGGGTCCCS---EEEECGGGG-TTSSCCEEEE
T ss_pred             CCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchh-hHhcCCCCC---EEEECcccc-CCCCCeEEEE
Confidence            346779975 6888999999999999999999999998765553221 111221112   238999987 78 8999999


Q ss_pred             eeCCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCC-CCC
Q 038416          234 TSDPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEI-PCITCP-VKP  310 (387)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~-~~~  310 (387)
                      +++        ++++.+.... ..+++.++++++++.++++...+   .+..++++++++++.+.|+++ .++..+ ..+
T Consensus       295 ~~~--------~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~  363 (433)
T 1z7d_A          295 AND--------DIMLVIKPGEHGSTYGGNPLAASICVEALNVLIN---EKLCENAEKLGGPFLENLKRELKDSKIVRDVR  363 (433)
T ss_dssp             ECH--------HHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEE
T ss_pred             ECH--------HHHhhhccccccccCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence            976        5666555432 24567788888888877765322   234556666777777777653 122211 123


Q ss_pred             CceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHhhh
Q 038416          311 QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       311 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      ..|.++++.++...    .+..++...++ ++||.+.|+.    .+++|++++  .+++++++++++|+++++++..
T Consensus       364 ~~g~~~~i~~~~~~----~~~~~~~~~l~-~~Gv~v~~~~----~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~  431 (433)
T 1z7d_A          364 GKGLLCAIEFKNEL----VNVLDICLKLK-ENGLITRDVH----DKTIRLTPPLCITKEQLDECTEIIVKTVKFFDE  431 (433)
T ss_dssp             EETTEEEEEECTTT----CCHHHHHHHHH-HTTEECCEET----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHC-
T ss_pred             eeeeEEEEEEccCh----hHHHHHHHHHH-HCCeEEecCC----CCEEEEECCcCCCHHHHHHHHHHHHHHHHHHHh
Confidence            45678888876321    13556777665 5699998852    579999884  5899999999999999887653

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.97  E-value=2.7e-29  Score=238.38  Aligned_cols=334  Identities=12%  Similarity=0.042  Sum_probs=219.8

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC--------CC
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR--------PG   97 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--------~g   97 (387)
                      .+|.+.+++.+++..... +|....+..++++++++++.+.++  .+.++|++++|+++|+..+++.+.+        ++
T Consensus        67 ~~p~v~~A~~~~~~~~~~-~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~  143 (459)
T 4a6r_A           67 GRKDFAEAARRQMEELPF-YNTFFKTTHPAVVELSSLLAEVTP--AGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEK  143 (459)
T ss_dssp             CCHHHHHHHHHHHHHCSC-CCTTSSSCCHHHHHHHHHHHHHSC--TTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTC
T ss_pred             CCHHHHHHHHHHHHhccc-cccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCC
Confidence            479999999999876421 333333445667777777766554  4567999999999999999999875        46


Q ss_pred             CeEEEcCCCCcchHHHhhccCCCc-------------eeeeeccCC--C-CCccCC--------hhhHHHhhcc---Cce
Q 038416           98 ANILIPRPGYPLYEIHAAGSNNNL-------------EARHYDLLP--E-KRWEVD--------LDGVEALADE---NTV  150 (387)
Q Consensus        98 ~~vl~~~p~~~~~~~~~~~~~~g~-------------~~~~~~~~~--~-~~~~~~--------~~~l~~~~~~---~~~  150 (387)
                      +.|++..|+|+++...+.  ..+.             ++..++.+.  . +++ .|        +++|+++++.   +..
T Consensus       144 ~~vi~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~~~~~  220 (459)
T 4a6r_A          144 KTLIGRWNGYHGSTIGGA--SLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIGADKV  220 (459)
T ss_dssp             CEEEEETTCCCCSSHHHH--HHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGE
T ss_pred             CEEEEECCCcCCccHHHH--hhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcCCCCE
Confidence            899999999998764443  2211             222333211  0 111 34        6788887752   445


Q ss_pred             EEEEeCC-CCCccc-cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccc
Q 038416          151 AIVIINP-GNPCGN-VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWR  228 (387)
Q Consensus       151 ~v~l~~p-~nptG~-~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r  228 (387)
                      ++++++| ++++|. .++.+++++|.++|++||+++|+||+|.+|...|.... ...++...+   +.++||+++.+|+|
T Consensus       221 ~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~-~~~~~~~pd---i~t~sK~l~gg~~~  296 (459)
T 4a6r_A          221 AAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFG-HQHFGFQPD---LFTAAKGLSSGYLP  296 (459)
T ss_dssp             EEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSH-HHHHTCCCS---EEEECGGGGTTSSC
T ss_pred             EEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccch-HhhcCCCCC---eeehhhhhcCCCCC
Confidence            5666666 455565 55889999999999999999999999999876664221 112222112   33688997666699


Q ss_pred             eEEEEeeCCCCcccchhHHHHHH---hhh-hccCCcchHHHHHHHHHhhhccH-HHHHHHH-HHHHHHHHHHHHHhhcCC
Q 038416          229 LGWLVTSDPNGILQNSGFVDSIK---GCL-NAASHPVTFIQAAVPRIVDETNE-AFFAKII-GLLKETADICYERIKEIP  302 (387)
Q Consensus       229 ~G~i~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~l~~~~  302 (387)
                      +|++++++        ++++.+.   ... ..+++.+++++.++.++|+...+ ..+++.. +.....++.+.+.|++++
T Consensus       297 lg~v~~~~--------~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  368 (459)
T 4a6r_A          297 IGAVFVGK--------RVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFE  368 (459)
T ss_dssp             CEEEEECH--------HHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTCT
T ss_pred             ccceeeCH--------HHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999976        7888776   222 24567889999998888875332 2333333 344444444445555555


Q ss_pred             CCCCCCCCCceEEEEEecCccccc------CCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHH
Q 038416          303 CITCPVKPQGAMFVMVKLNVSMLE------DIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLE  374 (387)
Q Consensus       303 ~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~  374 (387)
                      .+..  .+..|.|+++.+......      ......++...+ .++||.+.|+.     +++||++  ..++++++++++
T Consensus       369 ~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~g-----~~iRi~~~~~~t~e~i~~~l~  440 (459)
T 4a6r_A          369 HVDD--VRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIF-FRNNLIMRACG-----DHIVSAPPLVMTRAEVDEMLA  440 (459)
T ss_dssp             TEEE--EEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHH-HHTTEECEEET-----TEEEECCCTTCCHHHHHHHHH
T ss_pred             CeEE--EEEEEEEEEEEEecCccccccccchHHHHHHHHHHH-HHCCeEEecCC-----CEEEEECCCCCCHHHHHHHHH
Confidence            4442  234466777766432100      000134555555 45699999863     8999996  568999999999


Q ss_pred             HHHHHHHHhhh
Q 038416          375 RIKAFCQRHAK  385 (387)
Q Consensus       375 ~l~~~~~~~~~  385 (387)
                      +|++++++..+
T Consensus       441 ~l~~~l~~~~~  451 (459)
T 4a6r_A          441 VAERCLEEFEQ  451 (459)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999987653

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.97  E-value=1.8e-28  Score=228.26  Aligned_cols=314  Identities=11%  Similarity=0.074  Sum_probs=225.0

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh-cCCCCeEEEcC
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL-ARPGANILIPR  104 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~g~~vl~~~  104 (387)
                      .|+.+.+++.+.+....   |.+..+..++|+.++++++        .+++++++|+++|+..++.++ +++||+|+++.
T Consensus        18 ~~~~~~~a~~~~~~~~~---~~~~~~~~~l~~~la~~~~--------~~~~~~~~~gt~al~~~~~~~~~~~gd~Vl~~~   86 (393)
T 1mdo_A           18 MGAEELAAVKTVLDSGW---ITTGPKNQELEAAFCRLTG--------NQYAVAVSSATAGMHIALMALGIGEGDEVITPS   86 (393)
T ss_dssp             CCHHHHHHHHHHHHHTC---CSSSHHHHHHHHHHHHHHC--------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEES
T ss_pred             CCHHHHHHHHHHHhcCC---cCCChHHHHHHHHHHHHhC--------CCcEEEecChHHHHHHHHHHcCCCCCCEEEeCC
Confidence            34788899999887542   3334578899999999993        248999999999999999999 89999999999


Q ss_pred             CCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEE
Q 038416          105 PGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIV  184 (387)
Q Consensus       105 p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~l  184 (387)
                      |+|+++...++  ..|.+++.+++++ +++.+|++++++++++++++|++++   |||...+   +++|.++|+++|+++
T Consensus        87 ~~~~~~~~~~~--~~g~~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~v~~~~---~~G~~~~---~~~i~~l~~~~~~~l  157 (393)
T 1mdo_A           87 MTWVSTLNMIV--LLGANPVMVDVDR-DTLMVTPEHIEAAITPQTKAIIPVH---YAGAPAD---LDAIYALGERYGIPV  157 (393)
T ss_dssp             SSCHHHHHHHH--HTTCEEEEECBCT-TTCCBCHHHHHHHCCTTEEEECCBC---GGGCCCC---HHHHHHHHHHHTCCB
T ss_pred             CccHhHHHHHH--HCCCEEEEEeccC-CcCCCCHHHHHHhcCCCceEEEEeC---CCCCcCC---HHHHHHHHHHcCCeE
Confidence            99999999999  8999999998864 3467899999999988888887654   7999866   889999999999999


Q ss_pred             eecccccc-cccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhhcc------
Q 038416          185 IADEVYNH-LAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAA------  257 (387)
Q Consensus       185 i~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~------  257 (387)
                      |+|++|+. +.+.+.   ++..     ..+++.|++|...++|.++||+++++       +++++.+.......      
T Consensus       158 i~D~a~~~g~~~~~~---~~~~-----~d~~~~S~~k~K~l~~~~~g~~~~~~-------~~~~~~l~~~~~~~~~~~~~  222 (393)
T 1mdo_A          158 IEDAAHATGTSYKGR---HIGA-----RGTAIFSFHAIKNITCAEGGIVVTDN-------PQFADKLRSLKFHGLGVDAW  222 (393)
T ss_dssp             CEECTTCTTCEETTE---ETTS-----SSEEEEECCTTSSSCSSSCEEEEESC-------HHHHHHHHHHTBTTEECC--
T ss_pred             EEECccccCCeECCe---ecCC-----CCeEEEeCCCCCccccccceEEEeCC-------HHHHHHHHHHHhcCCcccch
Confidence            99999995 334332   1111     35889999944445566899999863       25667665432211      


Q ss_pred             -------------------CCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC-----Cce
Q 038416          258 -------------------SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKP-----QGA  313 (387)
Q Consensus       258 -------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~g  313 (387)
                                         ...+++...+....++     .+++..++.+++++.+.+.|++++ +.+...+     .++
T Consensus       223 ~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~-----~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~  296 (393)
T 1mdo_A          223 DRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQ-----KLDALNARRAAIAAQYHQAMADLP-FQPLSLPSWEHIHAW  296 (393)
T ss_dssp             ---------CCEESSCCCBCCCCHHHHHHHHHHHH-----THHHHHHHHHHHHHHHHHHHHTSS-CEECCCCSSCEECCC
T ss_pred             hhhcccccccccccccCccCCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCC-cccccCCCCCCCcee
Confidence                               0122222222222222     255666667778888888998875 6533223     345


Q ss_pred             EEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCcc--------------CC-------CCeEEEEee--CChHhHH
Q 038416          314 MFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTV--------------GM-------KNWLRIAFA--AEPATLE  370 (387)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~--------------~~-------~~~~Ri~~~--~~~e~~~  370 (387)
                      +++|+.++.... + .+..++...+ .++||.+.+|..+              ..       ..++|++++  .++++++
T Consensus       297 ~~~~v~~~~~~~-~-~~~~~l~~~l-~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~  373 (393)
T 1mdo_A          297 HLFIIRVDEARC-G-ITRDALMASL-KTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFD  373 (393)
T ss_dssp             SCEEEECCHHHH-S-SCHHHHHHHH-HHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHH
T ss_pred             EEEEEEeccccc-c-cCHHHHHHHH-HhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHH
Confidence            578888763100 0 1455666666 5579999987643              11       347999996  5899999


Q ss_pred             HHHHHHHHHHHHh
Q 038416          371 DGLERIKAFCQRH  383 (387)
Q Consensus       371 ~~~~~l~~~~~~~  383 (387)
                      .+++.|+++++..
T Consensus       374 ~~~~~l~~~~~~~  386 (393)
T 1mdo_A          374 RVITALHQIAGQG  386 (393)
T ss_dssp             HHHHHHHHHHC--
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999887653

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.97  E-value=8.5e-29  Score=234.97  Aligned_cols=337  Identities=13%  Similarity=0.013  Sum_probs=222.4

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC--------CC
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR--------PG   97 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--------~g   97 (387)
                      .+|.+.+++.+++.+... .|....+..++++++++++.+..  +.+.++|++|+|+++|++.+++++.+        ++
T Consensus        68 ~~p~v~~A~~~~~~~~~~-~~~~~~~~~~~~~~la~~l~~~~--~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~  144 (460)
T 3gju_A           68 GRQKIADAIATQAKNLAY-YHAYVGHGTEASITLAKMIIDRA--PKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEK  144 (460)
T ss_dssp             CCHHHHHHHHHHHHHHSC-CCCCTTCCCHHHHHHHHHHHHHS--CTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTC
T ss_pred             CCHHHHHHHHHHHHhccc-cccccccCCHHHHHHHHHHHhhC--CCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCC
Confidence            479999999998875321 23333344466667777666653  34567999999999999999999874        45


Q ss_pred             CeEEEcCCCCcchHHHhhccCC-------------CceeeeeccCC--C-CCccCC--------hhhHHHhhc----cCc
Q 038416           98 ANILIPRPGYPLYEIHAAGSNN-------------NLEARHYDLLP--E-KRWEVD--------LDGVEALAD----ENT  149 (387)
Q Consensus        98 ~~vl~~~p~~~~~~~~~~~~~~-------------g~~~~~~~~~~--~-~~~~~~--------~~~l~~~~~----~~~  149 (387)
                      +.|++.+|+|+++...+.  ..             ...+..++.+.  . ++.+.+        +++|+++++    +++
T Consensus       145 ~~vi~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~  222 (460)
T 3gju_A          145 KKIISRWRGYHGSGVMTG--SLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETI  222 (460)
T ss_dssp             CEEEEETTCCCCSSHHHH--HHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGE
T ss_pred             CEEEEECCCcCCCCHHHh--hccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCE
Confidence            899999999997654433  21             11233343221  0 111233        578888775    334


Q ss_pred             eEEEEeCCCCCccc-cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccc
Q 038416          150 VAIVIINPGNPCGN-VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWR  228 (387)
Q Consensus       150 ~~v~l~~p~nptG~-~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r  228 (387)
                      .+|++..++|++|. .++.+++++|.++|++||+++|+||+|.++...|.... ...++....   +.++||+++.+++|
T Consensus       223 aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~-~~~~~~~pd---i~t~sK~l~gG~~~  298 (460)
T 3gju_A          223 AAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFG-SDHYGIKPD---LITIAKGLTSAYAP  298 (460)
T ss_dssp             EEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCH-HHHHTCCCS---EEEECGGGTTTSSC
T ss_pred             EEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccch-HhhcCCCCC---eeeeehhhcCCCCC
Confidence            44544444677777 67888899999999999999999999998866553221 112221112   34689996543389


Q ss_pred             eEEEEeeCCCCcccchhHHHHHHhh-------h-hccCCcchHHHHHHHHHhhhccH-HHHHHHHHHHHHHHHHHHHHhh
Q 038416          229 LGWLVTSDPNGILQNSGFVDSIKGC-------L-NAASHPVTFIQAAVPRIVDETNE-AFFAKIIGLLKETADICYERIK  299 (387)
Q Consensus       229 ~G~i~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~  299 (387)
                      +||+++++        ++++.+...       . ..+++.++++++++.++|+...+ ..+++..+.....++.+.+.++
T Consensus       299 lg~v~~~~--------~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~  370 (460)
T 3gju_A          299 LSGVIVAD--------RVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVG  370 (460)
T ss_dssp             CEEEEEEH--------HHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEECH--------HHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence            99999986        788887531       2 24567889999998888875332 3345555555556666666666


Q ss_pred             cCCCCCCCCCCCceEEEEEecCccccc------CCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHH
Q 038416          300 EIPCITCPVKPQGAMFVMVKLNVSMLE------DIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLED  371 (387)
Q Consensus       300 ~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~  371 (387)
                      ++|.+..  .+..|.++++.+......      ......++...+ .++||.+.|+.   ..+++||++  ..+++++++
T Consensus       371 ~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~---~~~~iRi~~~~~~t~e~i~~  444 (460)
T 3gju_A          371 GHKNVGE--VRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATAL-AASGVIGRAMP---QGDILGFAPPLCLTREQADI  444 (460)
T ss_dssp             TSTTEEE--EEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHH-HHTTEECEECS---SSCEEEECCCTTCCHHHHHH
T ss_pred             cCCCeEE--EeeeeEEEEEEEccCccccccccchHHHHHHHHHHH-HHCCeEEecCC---CCCEEEEECCCCCCHHHHHH
Confidence            6654442  234466777766432100      000133455555 55699999875   358999996  568999999


Q ss_pred             HHHHHHHHHHHhhh
Q 038416          372 GLERIKAFCQRHAK  385 (387)
Q Consensus       372 ~~~~l~~~~~~~~~  385 (387)
                      ++++|++++++..+
T Consensus       445 ~l~~l~~~l~~~~~  458 (460)
T 3gju_A          445 VVSKTADAVKSVFA  458 (460)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988654

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.97  E-value=3.9e-28  Score=228.80  Aligned_cols=328  Identities=13%  Similarity=0.080  Sum_probs=227.0

Q ss_pred             cccCCCCCCCCCCCCCC-CcHHHHHHHHHHhcCCCCC--CCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHH
Q 038416            9 TRHSPWPRRPLGVSLLS-DSTVAEDAVVDALRTAHYN--CYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQA   85 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~--~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a   85 (387)
                      .+++.+.|..  ...++ .+|.+.+++.+++......  .|. .....++++.+++++        ..+++++++|+++|
T Consensus        77 ~ylD~~sg~~--~~~lgh~~p~v~~Ai~~~~~~~~~~~~~~~-~~~~~~l~~~la~~~--------g~~~v~~~~sGseA  145 (439)
T 2oat_A           77 KYFDFLSSYS--AVNQGHCHPKIVNALKSQVDKLTLTSRAFY-NNVLGEYEEYITKLF--------NYHKVLPMNTGVEA  145 (439)
T ss_dssp             EEEESSGGGG--TTTTCBTCHHHHHHHHHHHTTCSCCCTTSE-ESSHHHHHHHHHHHH--------TCSEEEEESSHHHH
T ss_pred             EEEEccCCcc--cccCCCCCHHHHHHHHHHHHhcCcccCccC-CHHHHHHHHHHHHhc--------CCCEEEEeCCHHHH
Confidence            4555544432  12456 8899999999998763211  122 235577788888776        25799999999999


Q ss_pred             HHHHHHhhc---------CCC-CeEEEcCCCCcchHH-HhhccCCC------------ceeeeeccCCCCCccCChhhHH
Q 038416           86 IEISLSVLA---------RPG-ANILIPRPGYPLYEI-HAAGSNNN------------LEARHYDLLPEKRWEVDLDGVE  142 (387)
Q Consensus        86 ~~~~~~~l~---------~~g-~~vl~~~p~~~~~~~-~~~~~~~g------------~~~~~~~~~~~~~~~~~~~~l~  142 (387)
                      +..+++.+.         .+| ++|++.+|+|++... .+.  ..|            .++..++.       .|+++|+
T Consensus       146 ~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~--~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~le  216 (439)
T 2oat_A          146 GETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAIS--SSTDPTSYDGFGPFMPGFDIIPY-------NDLPALE  216 (439)
T ss_dssp             HHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHT--TCCCHHHHTTSCSCCTTEEEECS-------SCHHHHH
T ss_pred             HHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhh--cCCChhcccCCCCCCCCeEEeCC-------CCHHHHH
Confidence            999999875         356 899999999987643 334  334            23344432       2799999


Q ss_pred             Hhhc-cCceEEEEeCC-CCCccc-cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCc
Q 038416          143 ALAD-ENTVAIVIINP-GNPCGN-VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSIS  219 (387)
Q Consensus       143 ~~~~-~~~~~v~l~~p-~nptG~-~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~s  219 (387)
                      ++++ +++++|+ ++| ++++|. .++.+++++|.++|++||+++|+||+|.++...|.... +..+....+ +  .|+|
T Consensus       217 ~~l~~~~~~~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~-~~~~~~~~D-i--~t~s  291 (439)
T 2oat_A          217 RALQDPNVAAFM-VEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLA-VDYENVRPD-I--VLLG  291 (439)
T ss_dssp             HHTTSTTEEEEE-ECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSG-GGGGTCCCS-E--EEEC
T ss_pred             HHhCCCCEEEEE-EECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchh-HHHhCCCCc-E--EEec
Confidence            9984 5555555 555 577897 56888999999999999999999999988765553221 111221112 2  2899


Q ss_pred             ccccccc-cceEEEEeeCCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Q 038416          220 KRWIVPG-WRLGWLVTSDPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYER  297 (387)
Q Consensus       220 K~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  297 (387)
                      |.++ +| +|+||+++++        ++++.+.... ..+++.+++++.++.++++...+   .+..++++++++++.+.
T Consensus       292 K~l~-~G~~~~G~v~~~~--------~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~  359 (439)
T 2oat_A          292 KALS-GGLYPVSAVLCDD--------DIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEE---ENLAENADKLGIILRNE  359 (439)
T ss_dssp             GGGG-TTSSCCEEEEECH--------HHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHH
T ss_pred             cccc-CCCCCeEEEEECH--------HHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHH
Confidence            9986 57 8999999976        5666555432 24567788888888777765332   24567778888899999


Q ss_pred             hhcCCCCCCC-CCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHH
Q 038416          298 IKEIPCITCP-VKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLE  374 (387)
Q Consensus       298 l~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~  374 (387)
                      |+++ ++..+ ..+..|.++++.++...  + .+..++...++ ++||.+.|+.    ++++|++++  .++++++++++
T Consensus       360 L~~l-~~~~~~~~~~~g~~~~v~l~~~~--~-~~~~~l~~~l~-~~Gv~v~~~~----~~~iRi~~~~~~t~e~i~~~l~  430 (439)
T 2oat_A          360 LMKL-PSDVVTAVRGKGLLNAIVIKETK--D-WDAWKVCLRLR-DNGLLAKPTH----GDIIRFAPPLVIKEDELRESIE  430 (439)
T ss_dssp             HTTS-CTTTEEEEEEETTEEEEEECCCS--S-CCHHHHHHHHH-HTTEECCBSS----SSEEEECCCTTCCHHHHHHHHH
T ss_pred             HHHh-cCCCcEEEEeeeeEEEEEEecCc--c-HHHHHHHHHHH-HCCeEEecCC----CCEEEEECccCCCHHHHHHHHH
Confidence            9876 34321 12345678888876421  0 13556777665 5699998853    588999884  68999999999


Q ss_pred             HHHHHHHH
Q 038416          375 RIKAFCQR  382 (387)
Q Consensus       375 ~l~~~~~~  382 (387)
                      +|++++++
T Consensus       431 ~l~~~l~~  438 (439)
T 2oat_A          431 IINKTILS  438 (439)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99998864

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.97  E-value=1.3e-28  Score=234.35  Aligned_cols=330  Identities=16%  Similarity=0.143  Sum_probs=219.4

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC----CCCe---E
Q 038416           28 TVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR----PGAN---I  100 (387)
Q Consensus        28 ~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~----~g~~---v  100 (387)
                      +.+.+++.+.+.... ..|....+..+||+.++++++        .+++++|+|+++|+..++.++++    +||.   |
T Consensus        55 ~~v~~a~~~~~~~~~-~~y~~~~~~~~l~~~la~~~~--------~~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~v  125 (467)
T 1ax4_A           55 NAMSDHQWAAMITGD-EAYAGSRNYYDLKDKAKELFN--------YDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPV  125 (467)
T ss_dssp             CCEEHHHHHHHHTCC-CCSSSCHHHHHHHHHHHHHHC--------CCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCE
T ss_pred             HHHHHHHHHHHhhcc-cccccCccHHHHHHHHHHHcC--------CCcEEEcCCcHHHHHHHHHHHHHhhccCCCccceE
Confidence            677777777765432 257665678899999999983        36999999999999999999988    9998   9


Q ss_pred             EEcCCCCcchHHHhhccCCCceeeeeccCC----C----CCccCChhhHHHhhcc----CceEEEEeCCCCCc-cccCCH
Q 038416          101 LIPRPGYPLYEIHAAGSNNNLEARHYDLLP----E----KRWEVDLDGVEALADE----NTVAIVIINPGNPC-GNVFSY  167 (387)
Q Consensus       101 l~~~p~~~~~~~~~~~~~~g~~~~~~~~~~----~----~~~~~~~~~l~~~~~~----~~~~v~l~~p~npt-G~~~~~  167 (387)
                      +++.+.|..+...+.  ..|.+++.++...    .    .++.+|+++|++++++    ++++|++++|+||+ |.+++.
T Consensus       126 iv~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~  203 (467)
T 1ax4_A          126 FISNFHFDTTAAHVE--LNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSM  203 (467)
T ss_dssp             EEESSCCHHHHHHHH--HTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCH
T ss_pred             EEeccccchhhHHHh--ccCCceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCCh
Confidence            888555566666777  7888877665421    1    1346899999999874    68999999999999 899999


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccc--c--------ccCCCCCcccc-ccCCCccEEEEecCccccccc-ccceEEEEee
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNH--L--------AFGSTPYVPMG-VFGSIVPVITLGSISKRWIVP-GWRLGWLVTS  235 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~--~--------~~~~~~~~~~~-~~~~~~~~~~i~s~sK~~~~~-g~r~G~i~~~  235 (387)
                      +++++|+++|++||+++|+|+++..  .        .+.+.....+. ....... +++.|+||.++++ |   |+++.+
T Consensus       204 ~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~s~sK~~g~~~G---g~~~~~  279 (467)
T 1ax4_A          204 SNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYAD-ALTMSAKKDPLLNIG---GLVAIR  279 (467)
T ss_dssp             HHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCS-EEEEETTSTTCCSSC---EEEEES
T ss_pred             hHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccc-eEEEeccccCCCCcc---eEEEeC
Confidence            9999999999999999999998653  1        22222111111 0000011 4568999998665 3   666665


Q ss_pred             CCCCcccchhHHHHHHhhhh------ccCCcchHHHHHHHHHhhhcc-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 038416          236 DPNGILQNSGFVDSIKGCLN------AASHPVTFIQAAVPRIVDETN-EAFFAKIIGLLKETADICYERIKEIPCITCPV  308 (387)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  308 (387)
                      ++.      ++++.+.....      .....+.....++...++... ++.+    ++..++++.+.+.|++ +++.+. 
T Consensus       280 d~~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~----~~~~~~~~~l~~~L~~-~~~~~~-  347 (467)
T 1ax4_A          280 DNE------EIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYL----HYRIGQVKYLGDRLRE-AGIPIQ-  347 (467)
T ss_dssp             SCH------HHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHH----HHHHHHHHHHHHHHHH-TTCCBC-
T ss_pred             CHH------HHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhhhhHH----HHHHHHHHHHHHHHHh-CCCCcc-
Confidence            320      35555544321      011222222333332343221 1222    2333556777778877 367744 


Q ss_pred             CCCceEEEEEecCcc--cccC-CCcHHHHHHHHHHhcCeEEEc-CCcc-------C-----CCCeEEEEee---CChHhH
Q 038416          309 KPQGAMFVMVKLNVS--MLED-IGDDLEFCLKLAKEESVIILP-GRTV-------G-----MKNWLRIAFA---AEPATL  369 (387)
Q Consensus       309 ~~~~g~~~~~~~~~~--~~~~-~~~~~~~~~~ll~~~gi~v~~-g~~~-------~-----~~~~~Ri~~~---~~~e~~  369 (387)
                      .|.+++++|+.+...  ..+. ..+..++...++.++||.+.| |..+       +     ..+++|+++.   .+++++
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i  427 (467)
T 1ax4_A          348 YPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHM  427 (467)
T ss_dssp             SSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHH
T ss_pred             cCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHHH
Confidence            677888999883210  0100 013456777775778999998 5432       1     1378999996   679999


Q ss_pred             HHHHHHHHHHHHHhh
Q 038416          370 EDGLERIKAFCQRHA  384 (387)
Q Consensus       370 ~~~~~~l~~~~~~~~  384 (387)
                      ++++++|++++++..
T Consensus       428 ~~~~~~l~~~~~~~~  442 (467)
T 1ax4_A          428 DYIADALIGLKEKFA  442 (467)
T ss_dssp             HHHHHHHHTTHHHHT
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999999887753

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.97  E-value=1.3e-28  Score=230.90  Aligned_cols=310  Identities=14%  Similarity=0.065  Sum_probs=217.8

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCC--------CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc--
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSP--------TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA--   94 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~--------~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--   94 (387)
                      +.|+.+.+++.+.+..... .+..        .....++++.+++++      ++++++|++|+|+++++..++.+++  
T Consensus        39 ~~~~~v~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~~l~~~la~~~------g~~~~~v~~~~g~t~al~~al~~~~~~  111 (416)
T 1qz9_A           39 ARPVAALARAQAVIAEEWG-NGLIRSWNSAGWRDLSERLGNRLATLI------GARDGEVVVTDTTSINLFKVLSAALRV  111 (416)
T ss_dssp             CCBTTHHHHHHHHHHTCCC-CCGGGHHHHTSGGGHHHHHHHHHHTTT------TCCTTSEEECSCHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHh-ccCccccchhhHHHHHHHHHHHHHHHc------CCCcccEEEeCChhHHHHHHHHhhccc
Confidence            6788899999998875311 1110        123356666666665      3467899999999999998888876  


Q ss_pred             ----CCCCeE-EEcCCCCcchHHHhh-cc-CC--CceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccC
Q 038416           95 ----RPGANI-LIPRPGYPLYEIHAA-GS-NN--NLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVF  165 (387)
Q Consensus        95 ----~~g~~v-l~~~p~~~~~~~~~~-~~-~~--g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~  165 (387)
                          ++||++ +++.+.|+++..... .. ..  |.+++.+++         +++|++++++++++|++++|+||||..+
T Consensus       112 ~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------~~~l~~~i~~~~~~v~~~~~~nptG~~~  182 (416)
T 1qz9_A          112 QATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS---------PEELPQAIDQDTAVVMLTHVNYKTGYMH  182 (416)
T ss_dssp             HHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS---------GGGHHHHCSTTEEEEEEESBCTTTCBBC
T ss_pred             ccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc---------HHHHHHHhCCCceEEEEeccccCccccc
Confidence                889875 455567765443221 00 23  888887764         7889998888899999999999999998


Q ss_pred             CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccce-EEEEeeCCCCcccch
Q 038416          166 SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRL-GWLVTSDPNGILQNS  244 (387)
Q Consensus       166 ~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~-G~i~~~~~~~~~~~~  244 (387)
                      +   +++|.++|+++|+++|+|++|+.    +.....+..+.   ..+++.|++|++ .+|.++ |++++++        
T Consensus       183 ~---l~~i~~l~~~~~~~li~D~a~~~----g~~~~~~~~~~---~d~~~~s~~K~l-~~g~~~~g~l~~~~--------  243 (416)
T 1qz9_A          183 D---MQALTALSHECGALAIWDLAHSA----GAVPVDLHQAG---ADYAIGCTYKYL-NGGPGSQAFVWVSP--------  243 (416)
T ss_dssp             C---HHHHHHHHHHHTCEEEEECTTTT----TTSCCCHHHHT---CSEEEECSSSTT-CCCTTCCCEEEECT--------
T ss_pred             C---HHHHHHHHHHcCCEEEEEccccc----cCcCCChhhcC---CCEEEecCcccC-CCCCCCeEEEEECH--------
Confidence            8   78899999999999999999984    21112222232   238889999995 456777 9999976        


Q ss_pred             hHHHHHHhh------------------------hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc
Q 038416          245 GFVDSIKGC------------------------LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE  300 (387)
Q Consensus       245 ~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  300 (387)
                      ++++.+...                        ....++++...+.++..+++...+.++++..+++.++++++.+.|++
T Consensus       244 ~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~  323 (416)
T 1qz9_A          244 QLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQ  323 (416)
T ss_dssp             TTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHh
Confidence            232222211                        01123566667777666666543345777888899999999999988


Q ss_pred             C-C--CCCCCCCCC----ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee---CChHhHH
Q 038416          301 I-P--CITCPVKPQ----GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA---AEPATLE  370 (387)
Q Consensus       301 ~-~--~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~---~~~e~~~  370 (387)
                      + |  ++.+. .+.    .+.++++.++        +..++...+ .++||.+...    ..+++||+++   .++++++
T Consensus       324 ~~~~~g~~~~-~~~~~~~~~~~~~~~~~--------~~~~l~~~l-~~~gi~~~~~----~~~~lRis~~~~~~t~~~i~  389 (416)
T 1qz9_A          324 RCAAHELTLV-TPREHAKRGSHVSFEHP--------EGYAVIQAL-IDRGVIGDYR----EPRIMRFGFTPLYTTFTEVW  389 (416)
T ss_dssp             HHTTSCCEEC-SCSSGGGBCSEEEEECT--------THHHHHHHH-HTTTEECEEE----TTTEEEEECCTTTCCHHHHH
T ss_pred             hccCCCeEEe-CCCCHHHcCCEEEEecC--------CHHHHHHHH-HhCCcEeccC----CCCeEEEeCcccCCCHHHHH
Confidence            5 6  67744 442    3567787775        245666666 4669987532    3689999996   4899999


Q ss_pred             HHHHHHHHHHHHh
Q 038416          371 DGLERIKAFCQRH  383 (387)
Q Consensus       371 ~~~~~l~~~~~~~  383 (387)
                      +++++|++++++.
T Consensus       390 ~~~~~l~~~~~~~  402 (416)
T 1qz9_A          390 DAVQILGEILDRK  402 (416)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999998764

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.96  E-value=2.7e-28  Score=228.78  Aligned_cols=327  Identities=14%  Similarity=0.066  Sum_probs=215.7

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCC------CCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCC
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYS------PTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGA   98 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~------~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~   98 (387)
                      +.++.+.+++.+.+.+....+|+      ......++++.+.+++.+.+  +.++++|++++| ++++..++.+++++||
T Consensus        36 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~--g~~~~~i~~~sG-t~a~~~~~~~~~~~gd  112 (417)
T 3n0l_A           36 FTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLF--NCKFANVQPNSG-SQANQGVYAALINPGD  112 (417)
T ss_dssp             CCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH--TCSEEECCCSSH-HHHHHHHHHHHSCTTC
T ss_pred             CCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHh--CCCCcceEeccH-HHHHHHHHHHhcCCCC
Confidence            34899999999888543222232      22223455553333333333  345566777776 7999999999999999


Q ss_pred             eEEEcCCCCcchHH---HhhccCCCce--eeeeccCCCCCccCChhhHHHhhc-cCceEEEEeCCCCCccccCCHHHHHH
Q 038416           99 NILIPRPGYPLYEI---HAAGSNNNLE--ARHYDLLPEKRWEVDLDGVEALAD-ENTVAIVIINPGNPCGNVFSYQHLQK  172 (387)
Q Consensus        99 ~vl~~~p~~~~~~~---~~~~~~~g~~--~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~v~l~~p~nptG~~~~~~~~~~  172 (387)
                      +|+++.|+|.++..   ...  ..|..  +..++++  .++.+|+++|+++++ +++++|++++|+|  |..++   +++
T Consensus       113 ~vl~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--G~~~~---l~~  183 (417)
T 3n0l_A          113 KILGMDLSHGGHLTHGAKVS--SSGKMYESCFYGVE--LDGRIDYEKVREIAKKEKPKLIVCGASAY--ARVID---FAK  183 (417)
T ss_dssp             EEEEECC------------------CCSEEEEECCC--TTSSCCHHHHHHHHHHHCCSEEEECCSSC--CSCCC---HHH
T ss_pred             EEEecccccccccchhhhhh--hhcceeeeEeccCC--CCCCcCHHHHHHHHHhcCCeEEEECCccc--CccCC---HHH
Confidence            99999999987654   333  33433  4444443  556799999999997 6889998888886  77877   889


Q ss_pred             HHHHHHhcCcEEeeccccc-ccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHH
Q 038416          173 IARTARNLGIIVIADEVYN-HLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIK  251 (387)
Q Consensus       173 l~~~~~~~~~~li~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~  251 (387)
                      |.++|++||+++|+|+++. ++.+.+....++.     ...+++.|+||++  +|.|.||+++++       +++.+.+.
T Consensus       184 i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-----~~di~~~s~sK~l--~g~~~G~~~~~~-------~~~~~~~~  249 (417)
T 3n0l_A          184 FREIADEIGAYLFADIAHIAGLVVAGEHPSPFP-----YAHVVSSTTHKTL--RGPRGGIIMTND-------EELAKKIN  249 (417)
T ss_dssp             HHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT-----TCSEEEEESSTTT--CSCSCEEEEESC-------HHHHHHHH
T ss_pred             HHHHHHHcCCEEEEECccchhhhhcccCCCccc-----cceEEEeeCcccc--CCCCeeEEEECC-------HHHHHHHh
Confidence            9999999999999999964 4444443222222     1238889999985  788899999973       25777776


Q ss_pred             hhhh--ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCC
Q 038416          252 GCLN--AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIG  329 (387)
Q Consensus       252 ~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  329 (387)
                      ....  ...+++...+.++..++....+..+.+..+++.++++.+.+.|++. ++.+...+..++++|+.+.....    
T Consensus       250 ~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~----  324 (417)
T 3n0l_A          250 SAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR-KFKLVSDGTDNHLVLMSFLDREF----  324 (417)
T ss_dssp             HHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECTTSSS----
T ss_pred             hhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CceeccCCCCceEEEEEcccCCC----
Confidence            6543  2234455555555555554333556788888899999999999884 67644223456678887753211    


Q ss_pred             cHHHHHHHHHHhcCeEEEcCCccCC------CCeEEEEee------CChHhHHHHHHHHHHHHHHh
Q 038416          330 DDLEFCLKLAKEESVIILPGRTVGM------KNWLRIAFA------AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       330 ~~~~~~~~ll~~~gi~v~~g~~~~~------~~~~Ri~~~------~~~e~~~~~~~~l~~~~~~~  383 (387)
                      +. +.+.++++++||.+.++..+..      ...+|+++.      .++++++++++.|++++++.
T Consensus       325 ~~-~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~~  389 (417)
T 3n0l_A          325 SG-KDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDV  389 (417)
T ss_dssp             CH-HHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             CH-HHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence            33 3445556788999987543321      357999983      46799999999999988654

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.96  E-value=1.3e-28  Score=233.12  Aligned_cols=328  Identities=14%  Similarity=0.132  Sum_probs=218.7

Q ss_pred             cHHHHHHHHHHhcCCCCCCCCCC-CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC--------CC
Q 038416           27 STVAEDAVVDALRTAHYNCYSPT-LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR--------PG   97 (387)
Q Consensus        27 ~~~v~~a~~~~~~~~~~~~y~~~-~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--------~g   97 (387)
                      ++.+.+++.+++....   +... .+..++++.+++.+.+.++  .+.++|++|+|+++|+..+++++..        +|
T Consensus        68 ~~~v~~a~~~~~~~~~---~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~  142 (449)
T 3a8u_X           68 RKEIQEAVAKQLSTLD---YSPGFQYGHPLSFQLAEKITDLTP--GNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATK  142 (449)
T ss_dssp             CHHHHHHHHHHTTTCS---CCCSSSCCCHHHHHHHHHHHTTSS--TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTC
T ss_pred             CHHHHHHHHHHHHhCC---CccccccCCHHHHHHHHHHHHhCC--CCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            8999999999987532   1111 2333555666666655443  4678999999999999999998764        67


Q ss_pred             CeEEEcCCCCcchHH-HhhccCCCc------------eeeeeccCC--CCC-ccCC--------hhhHHHhhcc---Cce
Q 038416           98 ANILIPRPGYPLYEI-HAAGSNNNL------------EARHYDLLP--EKR-WEVD--------LDGVEALADE---NTV  150 (387)
Q Consensus        98 ~~vl~~~p~~~~~~~-~~~~~~~g~------------~~~~~~~~~--~~~-~~~~--------~~~l~~~~~~---~~~  150 (387)
                      |+|++..|+|+++.. .+.  ..|.            ++..++.+.  ..+ .++|        +++|+++++.   ...
T Consensus       143 ~~vi~~~~~yhg~~~~~~~--~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~  220 (449)
T 3a8u_X          143 TKMIGRARGYHGVNIAGTS--LGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNI  220 (449)
T ss_dssp             CEEEEETTCCCCSSHHHHH--HCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGE
T ss_pred             CEEEEECCCcCCCChhhhh--ccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCE
Confidence            999999999987643 333  2221            233333321  111 1245        8899998863   233


Q ss_pred             EEEEeCC-CCCccc-cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccc-c
Q 038416          151 AIVIINP-GNPCGN-VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPG-W  227 (387)
Q Consensus       151 ~v~l~~p-~nptG~-~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g-~  227 (387)
                      .+++++| +|+||. ..+.+++++|.++|++||+++|+||+|.++...+... .+..+....+ +  .|+||.++. | +
T Consensus       221 ~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~-~~~~~~~~~d-i--~s~sK~l~~-G~~  295 (449)
T 3a8u_X          221 AAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMF-GADSFGVTPD-L--MCIAKQVTN-GAI  295 (449)
T ss_dssp             EEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-HHHHHTCCCS-E--EEECGGGGT-TSS
T ss_pred             EEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcch-hhhhcCCCCC-E--EEEcccccC-CCC
Confidence            4555666 567997 5678899999999999999999999998776544321 1222221112 2  288999874 7 9


Q ss_pred             ceEEEEeeCCCCcccchhHHHHHHhh---------h-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Q 038416          228 RLGWLVTSDPNGILQNSGFVDSIKGC---------L-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYER  297 (387)
Q Consensus       228 r~G~i~~~~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  297 (387)
                      |+||+++++        ++++.+...         . ..+++.+++++.++.++++...+   ....++++++++++++.
T Consensus       296 ~~G~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~---~~~~~~~~~~~~~l~~~  364 (449)
T 3a8u_X          296 PMGAVIAST--------EIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQK---ENLVQSVAEVAPHFEKA  364 (449)
T ss_dssp             CCEEEEEEH--------HHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECH--------HHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHH
Confidence            999999876        677777653         1 23456788888888877764322   24566777777888888


Q ss_pred             hhcCCCCCCCC-CCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHH
Q 038416          298 IKEIPCITCPV-KPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLE  374 (387)
Q Consensus       298 l~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~  374 (387)
                      |++++.+..+. .+..|+++|+.++........+..++...++ ++||.+.++     .+++||++  ..++++++++++
T Consensus       365 L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~-----g~~iRis~~~~~t~~~i~~~l~  438 (449)
T 3a8u_X          365 LHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALW-KAGFYVRFG-----GDTLQFGPTFNSKPQDLDRLFD  438 (449)
T ss_dssp             HHTTTTSTTEEEEEEETTEEEEEECCBTTBSSHHHHHHHHHHH-HHTEECEEE-----TTEEEECCCTTCCHHHHHHHHH
T ss_pred             HHHHhcCCCeEEEeeeEEEEEEEEecCcccccccHHHHHHHHH-HCCcEEecC-----CCEEEEECCCcCCHHHHHHHHH
Confidence            87753333211 2345778888886421000001225666665 569999986     27899996  568999999999


Q ss_pred             HHHHHHHHh
Q 038416          375 RIKAFCQRH  383 (387)
Q Consensus       375 ~l~~~~~~~  383 (387)
                      +|+++++++
T Consensus       439 ~l~~~l~~~  447 (449)
T 3a8u_X          439 AVGEVLNKL  447 (449)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHH
Confidence            999998764

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.96  E-value=8.3e-29  Score=234.28  Aligned_cols=334  Identities=16%  Similarity=0.070  Sum_probs=215.2

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC--CCCeEEEc
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR--PGANILIP  103 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--~g~~vl~~  103 (387)
                      .+|.+.+++++++...  .+|....+..+++..+++++.+..+. ...++|++|+|+++|++.+++.+..  .++.|++.
T Consensus        78 ~~p~v~~A~~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~-~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~  154 (451)
T 3oks_A           78 SAPKVVEAVRSQVGDF--THTCFMVTPYEGYVAVCEQLNRLTPV-RGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAF  154 (451)
T ss_dssp             TCHHHHHHHHHHHTTC--SCCTTTTSCCHHHHHHHHHHHHHSSC-CSSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             CCHHHHHHHHHHHHhc--ccccCCccCCHHHHHHHHHHHHhCCc-CCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEE
Confidence            4899999999998764  24444345556777777777765542 1357899999999999999988753  44899999


Q ss_pred             CCCCcchHHHhhccCC--------------CceeeeeccCC--------CCCcc---CChhhHHHhh----ccCceEEEE
Q 038416          104 RPGYPLYEIHAAGSNN--------------NLEARHYDLLP--------EKRWE---VDLDGVEALA----DENTVAIVI  154 (387)
Q Consensus       104 ~p~~~~~~~~~~~~~~--------------g~~~~~~~~~~--------~~~~~---~~~~~l~~~~----~~~~~~v~l  154 (387)
                      .++|+++...+.  ..              ...+..++.+.        .+...   .+++.+++.+    .+++.++++
T Consensus       155 ~~~yhG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi  232 (451)
T 3oks_A          155 DHAYHGRTNLTM--ALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVV  232 (451)
T ss_dssp             TTCCCCSSHHHH--HHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEE
T ss_pred             cCCcCCccHHHH--HhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEE
Confidence            999997654433  21              11334444321        00000   1233333433    345667777


Q ss_pred             eCCCCCcc-c-cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEE
Q 038416          155 INPGNPCG-N-VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWL  232 (387)
Q Consensus       155 ~~p~nptG-~-~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i  232 (387)
                      ++|.|++| . .++.+.+++|.++|++||+++|+||+|.++.+.|... .+..+.....   +.|+||.++. |+|+||+
T Consensus       233 ~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~-~~~~~~~~pd---i~t~sK~l~~-G~~iG~v  307 (451)
T 3oks_A          233 IEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMF-ACEHEGIDPD---LIVTAKGIAG-GLPLSAV  307 (451)
T ss_dssp             ECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-GGGGGTCCCS---EEEECGGGGT-TSSCEEE
T ss_pred             EcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccch-hhhhcCCCCC---eeeehhhhhC-CcceEEE
Confidence            88865544 4 4577779999999999999999999999887655422 2222222112   3389999866 8999999


Q ss_pred             EeeCCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 038416          233 VTSDPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNE-AFFAKIIGLLKETADICYERIKEIPCITCPVKP  310 (387)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  310 (387)
                      ++++        ++++.+.... ..+++.++++++++.++|+...+ ..+++..+.....++.+.+.++.+|.+. . .+
T Consensus       308 ~~~~--------~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~-~~  377 (451)
T 3oks_A          308 TGRA--------EIMDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIG-D-VR  377 (451)
T ss_dssp             EEEH--------HHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEE-E-EE
T ss_pred             EECH--------HHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeE-E-EE
Confidence            9976        6777665443 34677889999988888875332 2233333334444444444444555444 2 23


Q ss_pred             CceEEEEEecCccc--ccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHH
Q 038416          311 QGAMFVMVKLNVSM--LEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       311 ~~g~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~  382 (387)
                      ..|.++++.+....  .+......++...+ .++||.+.|+..|  .+++|++++  .+++++++++++|++++++
T Consensus       378 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  450 (451)
T 3oks_A          378 GRGAMIAMELVKAGTTEPDADLTKALCAGA-HAAGVIVLSCGTY--GNVVRFLPPLSIGDDLLNEGLDVLEEVLRG  450 (451)
T ss_dssp             EETTEEEEEEBSTTSCCBCHHHHHHHHHHH-HHTTEECEEECTT--SCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred             EeeEEEEEEEecCccCCCCHHHHHHHHHHH-HhCCcEEecCCCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            44667777763200  00111234455555 5669999987543  378999874  5899999999999998864

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.96  E-value=2.9e-28  Score=225.26  Aligned_cols=312  Identities=13%  Similarity=0.170  Sum_probs=220.2

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh-cCCCCeEEEc
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL-ARPGANILIP  103 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~g~~vl~~  103 (387)
                      +.++ +.+++.+.+...   .|.+..+..++|+.++++++        .+++++++|+++|+..++.++ .++||+|+++
T Consensus        17 ~~~~-~~~~~~~~~~~~---~~~~~~~~~~l~~~la~~~~--------~~~~~~~~~gt~a~~~~~~~~~~~~gd~v~~~   84 (374)
T 3uwc_A           17 DIEP-YLNDLREFIKTA---DFTLGAELEKFEKRFAALHN--------APHAIGVGTGTDALAMSFKMLNIGAGDEVITC   84 (374)
T ss_dssp             SCHH-HHHHHHHHHHHT---CCSSCHHHHHHHHHHHHHTT--------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             CchH-HHHHHHHHHHcC---CcccChhHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHcCCCCCCEEEEC
Confidence            3444 888988887754   45555678999999999983        248899999999999999999 8999999999


Q ss_pred             CCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcE
Q 038416          104 RPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGII  183 (387)
Q Consensus       104 ~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~  183 (387)
                      .|+|+++...++  ..|.++..++++  .++.+|++++++++++++++|+   |+||||...+   +++|.++|+++|++
T Consensus        85 ~~~~~~~~~~~~--~~g~~~~~~~~~--~~~~~d~~~l~~~~~~~~~~v~---~~n~~G~~~~---~~~i~~~~~~~~~~  154 (374)
T 3uwc_A           85 ANTFIASVGAIV--QAGATPVLVDSE--NGYVIDPEKIEAAITDKTKAIM---PVHYTGNIAD---MPALAKIAKKHNLH  154 (374)
T ss_dssp             SSSCHHHHHHHH--HTTCEEEEECBC--TTSSBCGGGTGGGCCTTEEEEC---CBCGGGCCCC---HHHHHHHHHHTTCE
T ss_pred             CCccHHHHHHHH--HcCCEEEEEecC--CCCCcCHHHHHHhCCCCceEEE---EeCCcCCcCC---HHHHHHHHHHcCCE
Confidence            999999999999  999999999886  4567899999999988887776   8899999876   88899999999999


Q ss_pred             Eeecccccccc-cCCCCCccccccCCCccEEEEecCc--ccccccccceEEEEeeCCCCcccchhHHHHHHhhhhc----
Q 038416          184 VIADEVYNHLA-FGSTPYVPMGVFGSIVPVITLGSIS--KRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNA----  256 (387)
Q Consensus       184 li~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~s~s--K~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~----  256 (387)
                      +|+|++|+.+. +.+..   +..+.    .+++.|++  |+++.+|. .|++++++       +++.+.+......    
T Consensus       155 li~D~~~~~g~~~~~~~---~~~~~----d~~~~s~~~~K~l~~~g~-~g~~~~~~-------~~~~~~~~~~~~~~~~~  219 (374)
T 3uwc_A          155 IVEDACQTILGRINDKF---VGSWG----QFACFSLHPLKNLNVWSD-AGVIITHS-------DEYAEKLRLYRNHGLIN  219 (374)
T ss_dssp             EEEECTTCTTCEETTEE---TTSSS----SEEEEECSSSSSSCCSSC-CEEEEESC-------HHHHHHHHHHTBTTEEE
T ss_pred             EEEeCCCccCceeCCee---ccccc----cEEEEeCCCCCcCCccce-eEEEEeCC-------HHHHHHHHHHHhcCccc
Confidence            99999998643 22211   11111    37778866  99766455 78888764       2455555543210    


Q ss_pred             ---------cCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCCCCCceEEEEEecCccccc
Q 038416          257 ---------ASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPC-ITCPVKPQGAMFVMVKLNVSMLE  326 (387)
Q Consensus       257 ---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~g~~~~~~~~~~~~~  326 (387)
                               +...+.....+....+     ..+++..++.+++.+.+.+.|+++++ +.....+..+...|..+....  
T Consensus       220 ~~~~~~~~~~~~~~~~~aa~~~~~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--  292 (374)
T 3uwc_A          220 RDVCVEYGINCRMDTIQAVIANRLM-----NQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRV--  292 (374)
T ss_dssp             TTEESSCCCBCBCCHHHHHHHHHHG-----GGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEE--
T ss_pred             cCccccccccCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEc--
Confidence                     1111222222221112     23566777778888888899988876 664433333333322221110  


Q ss_pred             CCCcHHHHHHHHHHhcCeEEEcCCccC----------------C-------CCeEEEEee--CChHhHHHHHHHHHHHHH
Q 038416          327 DIGDDLEFCLKLAKEESVIILPGRTVG----------------M-------KNWLRIAFA--AEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       327 ~~~~~~~~~~~ll~~~gi~v~~g~~~~----------------~-------~~~~Ri~~~--~~~e~~~~~~~~l~~~~~  381 (387)
                        .+..++...+ .++||.+.++....                .       ...+|++++  .++++++++++.|+++++
T Consensus       293 --~~~~~l~~~L-~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~  369 (374)
T 3uwc_A          293 --KYRDQLFQYL-KDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYL  369 (374)
T ss_dssp             --TTHHHHHHHH-HHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             --CCHHHHHHHH-HHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHH
Confidence              1345566655 56699998875110                0       167999884  589999999999999987


Q ss_pred             Hh
Q 038416          382 RH  383 (387)
Q Consensus       382 ~~  383 (387)
                      +.
T Consensus       370 ~~  371 (374)
T 3uwc_A          370 EK  371 (374)
T ss_dssp             TT
T ss_pred             hh
Confidence            64

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.96  E-value=6.6e-29  Score=233.78  Aligned_cols=325  Identities=12%  Similarity=0.054  Sum_probs=214.0

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC--CCCeEEEc
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR--PGANILIP  103 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--~g~~vl~~  103 (387)
                      .+|.+.+++++++.......|+. ....+|++.+++++      + ..+++++++|+++++..+++.+..  ++++|++.
T Consensus        70 ~~p~v~~A~~~~~~~~~~~~~~~-~~~~~l~~~la~~~------~-~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~  141 (429)
T 3k28_A           70 ANDRVVEALKAVAERGTSFGAPT-EIENKLAKLVIERV------P-SIEIVRMVNSGTEATMSALRLARGYTGRNKILKF  141 (429)
T ss_dssp             SCHHHHHHHHHHHHHCSCCSSCC-HHHHHHHHHHHHHS------T-TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCHHHHHHHHHHHhhCcCcCCCC-HHHHHHHHHHHHhC------C-CCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEE
Confidence            68999999999987643333433 45567777777776      2 568999999999999999988764  56899999


Q ss_pred             CCCCcchHHHhhccCCCceeeeeccCCCCCcc------------CChhhHHHhhcc--CceEEEEeCC-CCCccccC-CH
Q 038416          104 RPGYPLYEIHAAGSNNNLEARHYDLLPEKRWE------------VDLDGVEALADE--NTVAIVIINP-GNPCGNVF-SY  167 (387)
Q Consensus       104 ~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------------~~~~~l~~~~~~--~~~~v~l~~p-~nptG~~~-~~  167 (387)
                      .|+|+++...+. ...|.....+..+...+..            -|+++|+++++.  +...+++++| +|++|... +.
T Consensus       142 ~~~yhg~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~  220 (429)
T 3k28_A          142 IGCYHGHGDSLL-IKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQP  220 (429)
T ss_dssp             ETCCCCSCGGGC-SSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCT
T ss_pred             CCCcCCCcHHHH-HhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCH
Confidence            999987654443 0233222222221111110            178899988863  3344555555 55666654 67


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      +++++|.++|++||+++|+||+|.++ ..+... ....+...   ..+.++||.++ +|+|+||+++++        +++
T Consensus       221 ~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~-~~~~~~~~---~di~t~sK~~~-~G~~iG~~~~~~--------~~~  286 (429)
T 3k28_A          221 GFLEGLREVTEQNGALLIFDEVMTGF-RVAYNC-GQGYYGVT---PDLTCLGKVIG-GGLPVGAYGGKA--------EIM  286 (429)
T ss_dssp             THHHHHHHHHHHHTCEEEEECTTTTT-TSSTTH-HHHHHTCC---CSEEEECGGGG-TTSCCEEEEECH--------HHH
T ss_pred             HHHHHHHHHHHHcCCEEEEecccccc-ccCcch-HHHHhCCC---Cceehhhhhhc-CCCCeEEEEEcH--------HHH
Confidence            88999999999999999999999987 444321 11112211   12447899986 489999999975        677


Q ss_pred             HHHHhh----hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc----CCCCCCCCCCCceEEEEEe
Q 038416          248 DSIKGC----LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE----IPCITCPVKPQGAMFVMVK  319 (387)
Q Consensus       248 ~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~g~~~~~~  319 (387)
                      +.+...    ...+++.+++++.++.++++...    ++..++++++++++++.|++    ++.+. . .+..|.++++.
T Consensus       287 ~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~-~~~~g~~~~~~  360 (429)
T 3k28_A          287 RQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT----PESYVEFERKAEMLEAGLRKAAEKHGIPH-H-INRAGSMIGIF  360 (429)
T ss_dssp             TTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC----HHHHHHHHHHHHHHHHHHHHHHHHTTCCC-E-EEEETTEEEEE
T ss_pred             hhhccCCCccccCCCCCChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCCE-E-EEeeccEEEEE
Confidence            766542    12356788899999988888644    34555566666666665554    33333 2 23446666766


Q ss_pred             cCcccc--------cCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          320 LNVSML--------EDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       320 ~~~~~~--------~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      +.....        ++.....++...+ .++||.+.|+.    .+.+|+++..+++++++++++|++++++++
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~----~~~~r~~~~~t~e~i~~~l~~l~~~l~~~~  428 (429)
T 3k28_A          361 FTDEPVINYDAAKSSNLQFFAAYYREM-VEQGVFLPPSQ----FEGLFLSTVHSDADIEATIAAAEIAMSKLK  428 (429)
T ss_dssp             SSSSCCCSHHHHTTSCHHHHHHHHHHH-HHTTEECCSST----TSCBCCCTTCCHHHHHHHHHHHHHHHHTCC
T ss_pred             EecCCcccccccccccHHHHHHHHHHH-HHCCeEEecCC----CCCEEEECCCCHHHHHHHHHHHHHHHHHHh
Confidence            643110        0000124555555 56799999874    457899888899999999999999998764

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.96  E-value=1.2e-28  Score=233.20  Aligned_cols=330  Identities=14%  Similarity=0.089  Sum_probs=209.8

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC----CC----
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR----PG----   97 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~----~g----   97 (387)
                      .+|.+.+++++++...  .+|....+..+.+.++++++.+..+  .+.++|++|+|+++|++.+++.+.+    +|    
T Consensus        61 ~~p~v~~A~~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~  136 (448)
T 3dod_A           61 RKKELDDAIKKQLGKI--AHSTLLGMTNVPATQLAETLIDISP--KKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEK  136 (448)
T ss_dssp             SCHHHHHHHHHHHTTC--SCCCCSSSEEHHHHHHHHHHHHHSC--TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTC
T ss_pred             CCHHHHHHHHHHHHhc--cCccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCC
Confidence            4899999999998764  2333334555677777777776554  3457999999999999999999865    44    


Q ss_pred             CeEEEcCCCCcchHHHhhccCCCc-------------eeeeeccCCCCCccC-----------ChhhHHHhhc---cCce
Q 038416           98 ANILIPRPGYPLYEIHAAGSNNNL-------------EARHYDLLPEKRWEV-----------DLDGVEALAD---ENTV  150 (387)
Q Consensus        98 ~~vl~~~p~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~-----------~~~~l~~~~~---~~~~  150 (387)
                      |+|+++.|+|+++.....  ..+.             .+..++.+  +.+..           |+++|+++++   +++.
T Consensus       137 ~~vi~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a  212 (448)
T 3dod_A          137 QKFIAMKNGYHGDTIGAV--SVGSIELFHHVYGPLMFESYKAPIP--YVYRSESGDPDECRDQCLRELAQLLEEHHEEIA  212 (448)
T ss_dssp             CEEEEEC-------------------------------CEEECCC--CCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEE
T ss_pred             CEEEEECCCCCCccHHHH--HhcCCccccccccCCCCCceEeCCC--ccccCCccchhhhhHHHHHHHHHHHHhCCCCEE
Confidence            999999999987654443  3222             12223221  11111           3788888886   3344


Q ss_pred             EEEEeCCC-CCccc-cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccc-c
Q 038416          151 AIVIINPG-NPCGN-VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPG-W  227 (387)
Q Consensus       151 ~v~l~~p~-nptG~-~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g-~  227 (387)
                      +|++..++ |++|. .++.+++++|.++|++||+++|+||+|+++.+.|... ....+...   ..+.++||+++. | +
T Consensus       213 ~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~-a~~~~~~~---~di~t~sK~l~~-G~~  287 (448)
T 3dod_A          213 ALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMF-ACEHENVQ---PDLMAAGKGITG-GYL  287 (448)
T ss_dssp             EEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-GGGGGTCC---CSEEEECGGGGT-TSS
T ss_pred             EEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchh-hhhhcCCC---CCEEEecccccC-CcC
Confidence            45544445 77875 5677889999999999999999999999887665432 12222211   113478999864 8 5


Q ss_pred             ceEEEEeeCCCCcccchhHHHHHHh-------hh-hccCCcchHHHHHHHHHhhhccH-HHHHHHHHHHHHHHHHHHHHh
Q 038416          228 RLGWLVTSDPNGILQNSGFVDSIKG-------CL-NAASHPVTFIQAAVPRIVDETNE-AFFAKIIGLLKETADICYERI  298 (387)
Q Consensus       228 r~G~i~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l  298 (387)
                      |+||+++++        ++++.+..       .. ..+++.+++++.++.++|+...+ +.+++..+.....++.+.+ +
T Consensus       288 ~ig~v~~~~--------~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~-l  358 (448)
T 3dod_A          288 PIAVTFATE--------DIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQD-L  358 (448)
T ss_dssp             CCEEEEEEH--------HHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-H
T ss_pred             ceEEEEECH--------HHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-H
Confidence            999999976        78887765       22 24567788899988888875332 2233333444444444444 4


Q ss_pred             hcCCCCCCCCCCCceEEEEEecCccccc--CCC----cHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHH
Q 038416          299 KEIPCITCPVKPQGAMFVMVKLNVSMLE--DIG----DDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLE  370 (387)
Q Consensus       299 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~----~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~  370 (387)
                      ..+|.+. . .+..|.++++.+......  ...    ...++...++ ++||.+.|+     .+++||++  ..++++++
T Consensus       359 ~~~~~~~-~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~-----~~~iRi~~~~~~t~e~i~  430 (448)
T 3dod_A          359 HALPHVG-D-IRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMR-ELGMLTRPL-----GDVIAFLPPLASTAEELS  430 (448)
T ss_dssp             TTSTTEE-E-EEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHH-HTTEECCEE-----TTEEEECCCTTCCHHHHH
T ss_pred             hcCCCeE-E-EEeeeEEEEEEEccCcccccccchhhHHHHHHHHHHH-HCCcEEecc-----CCEEEEECCCCCCHHHHH
Confidence            4454333 1 233466778777542110  000    0245666664 569999886     37999976  56899999


Q ss_pred             HHHHHHHHHHHHhhh
Q 038416          371 DGLERIKAFCQRHAK  385 (387)
Q Consensus       371 ~~~~~l~~~~~~~~~  385 (387)
                      +++++|+++++++.+
T Consensus       431 ~~l~~l~~~l~~~~~  445 (448)
T 3dod_A          431 EMVAIMKQAIHEVTS  445 (448)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999988764

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.96  E-value=1.9e-27  Score=219.78  Aligned_cols=315  Identities=10%  Similarity=0.073  Sum_probs=224.5

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh---cCCCCeE
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL---ARPGANI  100 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l---~~~g~~v  100 (387)
                      .++++.+.+++.+.+....   +.+.....++|+.++++++      .  +++++++|+++|+..++.++   .++||+|
T Consensus         9 ~~~~~~v~~a~~~~~~~~~---~~~~~~~~~l~~~la~~~~------~--~~v~~~~ggt~al~~~~~~~~~~~~~gd~V   77 (375)
T 2fnu_A            9 PCLDKEDKKAVLEVLNSKQ---LTQGKRSLLFEEALCEFLG------V--KHALVFNSATSALLTLYRNFSEFSADRNEI   77 (375)
T ss_dssp             CCCCHHHHHHHHHHHTSSC---CSSSHHHHHHHHHHHHHHT------C--SEEEEESCHHHHHHHHHHHSSCCCTTSCEE
T ss_pred             CCCCHHHHHHHHHHHHcCc---ccCChHHHHHHHHHHHHhC------C--CeEEEeCCHHHHHHHHHHHhcccCCCCCEE
Confidence            3789999999999987532   3333467899999999993      2  38999999999999999999   8899999


Q ss_pred             EEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhc
Q 038416          101 LIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNL  180 (387)
Q Consensus       101 l~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~  180 (387)
                      +++.|+|+++...+.  ..|.+++.++++++ + .+|++++++++++++++|++++|   ||...+   +++|.++|+++
T Consensus        78 l~~~~~~~~~~~~~~--~~g~~~~~~~~~~~-~-~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~---l~~i~~l~~~~  147 (375)
T 2fnu_A           78 ITTPISFVATANMLL--ESGYTPVFAGIKND-G-NIDELALEKLINERTKAIVSVDY---AGKSVE---VESVQKLCKKH  147 (375)
T ss_dssp             EECSSSCTHHHHHHH--HTTCEEEECCBCTT-S-SBCGGGSGGGCCTTEEEEEEECG---GGCCCC---HHHHHHHHHHH
T ss_pred             EECCCccHhHHHHHH--HCCCEEEEeccCCC-C-CCCHHHHHhhcCcCceEEEEeCC---cCCccC---HHHHHHHHHHc
Confidence            999999999999999  89999999988643 2 68999999999888888888877   999987   78889999999


Q ss_pred             CcEEeecccccccccCCCCCccccccCCCccEEEEecCc--ccccccccceEEEEeeCCCCcccchhHHHHHHhhhhcc-
Q 038416          181 GIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSIS--KRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAA-  257 (387)
Q Consensus       181 ~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~s--K~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~-  257 (387)
                      |+++|+|++|+.+.....  ..+..+.    .+++.|+|  |+++. |  +|++++.+      ++++.+++....... 
T Consensus       148 ~~~li~D~a~~~~~~~~~--~~~~~~~----~i~~~s~s~~K~~~~-g--~g~~~~~~------~~~~~~~~~~~~~~~~  212 (375)
T 2fnu_A          148 SLSFLSDSSHALGSEYQN--KKVGGFA----LASVFSFHAIKPITT-A--EGGAVVTN------DSELHEKMKLFRSHGM  212 (375)
T ss_dssp             TCEEEEECTTCTTCEETT--EETTSSS----SEEEEECCTTSSSCC-S--SCEEEEES------CHHHHHHHHHHTBTTE
T ss_pred             CCEEEEECccccCCeECC--eeccccC----CeEEEeCCCCCCccc-c--CceEEEeC------CHHHHHHHHHHHhcCC
Confidence            999999999986432211  1122111    27777888  99755 5  78888742      125666666543211 


Q ss_pred             ----------------CCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC-----CceEEE
Q 038416          258 ----------------SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKP-----QGAMFV  316 (387)
Q Consensus       258 ----------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~g~~~  316 (387)
                                      ...++....+...  .   ..++++..++.+++++++.+.|++++++.+. .+     ..++++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~  286 (375)
T 2fnu_A          213 LKKDFFEGEVKSIGHNFRLNEIQSALGLS--Q---LKKAPFLMQKREEAALTYDRIFKDNPYFTPL-HPLLKDKSSNHLY  286 (375)
T ss_dssp             EESSSSCEEESSCCCBCCCCHHHHHHHHH--H---HTTHHHHHHHHHHHHHHHHHHHTTCSSEEES-GGGCSSCCCCSCE
T ss_pred             ccccccccccccccccCCCCHHHHHHHHH--H---HHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-CCCCCCCcceEEE
Confidence                            1122222222111  1   2346677888889999999999998777743 33     123345


Q ss_pred             EEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCc-------cC-------C-------CCeEEEEee--CChHhHHHHH
Q 038416          317 MVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRT-------VG-------M-------KNWLRIAFA--AEPATLEDGL  373 (387)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~-------~~-------~-------~~~~Ri~~~--~~~e~~~~~~  373 (387)
                      ++.++....   .+..++...| .++||.+..+..       |+       .       .+++||+++  .+++++++++
T Consensus       287 ~~~~~~~~~---~~~~~l~~~L-~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~  362 (375)
T 2fnu_A          287 PILMHQKFF---TCKKLILESL-HKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIA  362 (375)
T ss_dssp             EEEECGGGG---GGHHHHHHHH-HHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHH
T ss_pred             EEEeCcccc---chHHHHHHHH-HHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHH
Confidence            666653110   0245566666 567999883211       11       1       167999996  4899999999


Q ss_pred             HHHHHHHHHhh
Q 038416          374 ERIKAFCQRHA  384 (387)
Q Consensus       374 ~~l~~~~~~~~  384 (387)
                      +.|+++++++.
T Consensus       363 ~~l~~~~~~~~  373 (375)
T 2fnu_A          363 HSVLKTFESFK  373 (375)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhc
Confidence            99999887653

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.96  E-value=2.8e-28  Score=232.25  Aligned_cols=337  Identities=14%  Similarity=0.046  Sum_probs=228.2

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCC------CCCCcHHHHHHHHHHHhhcCCCCCCC--CCEEEcCChHHHHHHHHHhhcCC
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYS------PTLGVPSARRGIADYLNRDLPYKLSP--EDVYLTLGCSQAIEISLSVLARP   96 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~------~~~~~~~lr~~ia~~~~~~~~~~~~~--~~i~~~~g~~~a~~~~~~~l~~~   96 (387)
                      ++++.+.+++.+.+.+....+|+      ......++++.+.+++.+.+|...+.  .+|++++|+ +++..++.+++++
T Consensus        55 ~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs-~an~~~~~all~p  133 (483)
T 1rv3_A           55 FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS-PANFAVYTALVEP  133 (483)
T ss_dssp             CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-HHHHHHHHHHTCT
T ss_pred             CCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH-HHHHHHHHHhcCC
Confidence            57999999999988764221232      22234677777777777777643211  237777777 8999989999999


Q ss_pred             CCeEEEcCCCCcchHHHhh------ccCCCceeeeecc--CCCCCccCChhhHHHhhc-cCceEEEEeCCCCCccccCCH
Q 038416           97 GANILIPRPGYPLYEIHAA------GSNNNLEARHYDL--LPEKRWEVDLDGVEALAD-ENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        97 g~~vl~~~p~~~~~~~~~~------~~~~g~~~~~~~~--~~~~~~~~~~~~l~~~~~-~~~~~v~l~~p~nptG~~~~~  167 (387)
                      ||+|+++.+.|.++.....      ....|..+..+++  ++ +++.+|+++|+++++ +++++|++ +++|++ ..++ 
T Consensus       134 GD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~-~~~~iD~d~le~~i~~~~tklIi~-~~sn~~-~~~d-  209 (483)
T 1rv3_A          134 HGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNP-DTGYIDYDRLEENARLFHPKLIIA-GTSCYS-RNLD-  209 (483)
T ss_dssp             TCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCT-TTCSBCHHHHHHHHHHHCCSEEEE-CCSSCC-SCCC-
T ss_pred             CCEEEEecCccCcCcchhhhhcccCcccccceEEEEECcccc-CCCcCCHHHHHHHHhhcCCcEEEE-eCCcCC-CcCC-
Confidence            9999999999887643221      0022322444443  43 356899999999997 78999988 888888 7776 


Q ss_pred             HHHHHHHHHHHhcCcEEeeccccc-ccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccch--
Q 038416          168 QHLQKIARTARNLGIIVIADEVYN-HLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNS--  244 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~--  244 (387)
                        +++|.++|+++|+++|+|++|. ++.+.+....++.  .   ..+++.|+||++  .|+|.|++++++........  
T Consensus       210 --l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~--~---~div~~s~~K~l--~GprgG~i~~~~~~~~~~~~~g  280 (483)
T 1rv3_A          210 --YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE--H---CHVVTTTTHKTL--RGCRAGMIFYRRGVRSVDPKTG  280 (483)
T ss_dssp             --HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG--T---CSEEEEESSGGG--CCCSCEEEEEECSBCC------
T ss_pred             --HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC--C---CcEEEecCcccC--CCCCceEEEEcchhhhhccccC
Confidence              8899999999999999999987 4444343223332  1   227889999985  68888999998631100000  


Q ss_pred             -----hHHHHHHhhh-h-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC-ceEEE
Q 038416          245 -----GFVDSIKGCL-N-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ-GAMFV  316 (387)
Q Consensus       245 -----~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~g~~~  316 (387)
                           ++.+.+.... . ..++++.....++..++....+..+++..+++.++++.+.+.|+++ ++.++ .+. ...++
T Consensus       281 ~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~  358 (483)
T 1rv3_A          281 KEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-GYKIV-TGGSDNHLI  358 (483)
T ss_dssp             -CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEG-GGSCSSSEE
T ss_pred             cchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc-CCEec-cCCCCCceE
Confidence                 1333333221 1 2344555566666666665444567888899999999999999988 77744 332 34577


Q ss_pred             EEecCcccccCCCcHHHHHHHHHHhcCeEEE----cCCccC-CCCeEEEEeeC--C----hHhHHHHHHHHHHHHHH
Q 038416          317 MVKLNVSMLEDIGDDLEFCLKLAKEESVIIL----PGRTVG-MKNWLRIAFAA--E----PATLEDGLERIKAFCQR  382 (387)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----~g~~~~-~~~~~Ri~~~~--~----~e~~~~~~~~l~~~~~~  382 (387)
                      |+.+.....    +..++ ..++++.||.+.    ||..+. ..+++||+++.  +    +++++++++.|.++++.
T Consensus       359 ~v~~~~~g~----~~~~~-~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~  430 (483)
T 1rv3_A          359 LVDLRSKGT----DGGRA-EKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL  430 (483)
T ss_dssp             EEEGGGGTC----CHHHH-HHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEeccCCCC----CHHHH-HHHHHhCCcEEecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence            777754211    34444 445578899999    876322 25789999953  4    89999999999998876

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.96  E-value=1.1e-28  Score=233.41  Aligned_cols=324  Identities=13%  Similarity=0.075  Sum_probs=217.8

Q ss_pred             CcHHHHHHHHHHhcCCCCC--CCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC-------C
Q 038416           26 DSTVAEDAVVDALRTAHYN--CYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR-------P   96 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~--~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-------~   96 (387)
                      .+|.+.+++++++......  .+.......+|++.+++++      +.+.++|++++|+++|++.+++.+.+       +
T Consensus        92 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~L~e~la~~~------~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~  165 (457)
T 3tfu_A           92 GHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDIT------PAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLP  165 (457)
T ss_dssp             TCHHHHHHHHHHHHHCSCCCSSSEECHHHHHHHHHHHHHS------STTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             CCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhC------CCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCC
Confidence            6899999999988753111  1111123345555555554      34567999999999999999998864       5


Q ss_pred             C-CeEEEcCCCCcchHHHhhccCCC--------------ceeeeeccCCCCCccCChhhHHHhhc---cCceEEEEeC-C
Q 038416           97 G-ANILIPRPGYPLYEIHAAGSNNN--------------LEARHYDLLPEKRWEVDLDGVEALAD---ENTVAIVIIN-P  157 (387)
Q Consensus        97 g-~~vl~~~p~~~~~~~~~~~~~~g--------------~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~-p  157 (387)
                      | +.|++.+++|+++.....  ..+              .++..++.+.......|+++|+++++   +++++|++.. +
T Consensus       166 g~~~ii~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~  243 (457)
T 3tfu_A          166 GKRRLMTWRGGYHGDTFLAM--SICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVV  243 (457)
T ss_dssp             TCCEEEEETTCCCCSSHHHH--TTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSE
T ss_pred             CCceEEEEcCCcCCccHHhh--cccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCC
Confidence            5 589999999988665544  331              12233333222111237889998887   5566677666 6


Q ss_pred             CCCccccC-CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeC
Q 038416          158 GNPCGNVF-SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSD  236 (387)
Q Consensus       158 ~nptG~~~-~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~  236 (387)
                      +|++|..+ +++.+++|.++|++||+++|+||+|.+|...|.... +..+....+++   |+||.++.+.+|+||+++++
T Consensus       244 ~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a-~~~~~~~pdii---t~sK~l~gG~~~lG~v~~~~  319 (457)
T 3tfu_A          244 QGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFA-ADHAGVSPDIM---CVGKALTGGYLSLAATLCTA  319 (457)
T ss_dssp             ECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSST-HHHHTCCCSEE---EECGGGGTTSSCCEEEEEEH
T ss_pred             cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhH-hHhcCCCceEE---EEChhhhCCCcceEEEEEcH
Confidence            89999876 777799999999999999999999998876654321 22222222222   89998644337999999986


Q ss_pred             CCCcccchhHHHHHHhh-----h-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcC---CCCCCC
Q 038416          237 PNGILQNSGFVDSIKGC-----L-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEI---PCITCP  307 (387)
Q Consensus       237 ~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~  307 (387)
                              ++++.+...     . ..+++.++++++++.++|+...+   +...++++++.+++++.|+++   +.+.. 
T Consensus       320 --------~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~v~~-  387 (457)
T 3tfu_A          320 --------DVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLG---QDWRTRITELAAGLTAGLDTARALPAVTD-  387 (457)
T ss_dssp             --------HHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHT---SCHHHHHHHHHHHHHHHHGGGGGSTTEEE-
T ss_pred             --------HHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHhcCCCeee-
Confidence                    788877521     1 24567888898888888764322   234455566666666666654   33331 


Q ss_pred             CCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHHHHhhh
Q 038416          308 VKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       308 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                       .+..|.++++.++..     .+..++...++ ++||.+.|.     .+++|+++  ..+++++++++++|+++++++..
T Consensus       388 -vr~~G~~~~i~l~~~-----~~~~~~~~~l~-~~Gv~v~~~-----~~~lRi~p~~~~t~eei~~~l~~L~~~l~~~~~  455 (457)
T 3tfu_A          388 -VRVCGAIGVIECDRP-----VDLAVATPAAL-DRGVWLRPF-----RNLVYAMPPYICTPAEITQITSAMVEVARLVGS  455 (457)
T ss_dssp             -EEECSSCEEEEESSC-----CCHHHHHHHHH-HTTEECCCB-----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred             -eecCCeEEEEEECCc-----ccHHHHHHHHH-HCCeEEEec-----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence             233466778777542     13556777665 459999874     47899997  45899999999999999987653

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.96  E-value=2.2e-27  Score=221.04  Aligned_cols=280  Identities=19%  Similarity=0.186  Sum_probs=198.3

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHh----hccCCCceeee
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHA----AGSNNNLEARH  125 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~----~~~~~g~~~~~  125 (387)
                      ....++++.++++++      .  ++.++++++++|+..++.+++++||+|+++.|+|+++...+    .  ..|.++..
T Consensus        65 ~~~~~l~~~la~~~g------~--~~~i~~~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~--~~g~~~~~  134 (398)
T 1gc0_A           65 PTLNLLEARMASLEG------G--EAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIG--EFGVKLRH  134 (398)
T ss_dssp             HHHHHHHHHHHHHHT------C--SEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGG--GGTCEEEE
T ss_pred             hHHHHHHHHHHHHhC------C--CcEEEECCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHH--HcCCEEEE
Confidence            456788888888883      2  35666666689999999999999999999999999876654    5  67888888


Q ss_pred             eccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccc
Q 038416          126 YDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV  205 (387)
Q Consensus       126 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~  205 (387)
                      ++.       .|++++++++++++++|++++|+||||.+++   +++|.++|+++|+++|+|++|+.+.+..    ++ .
T Consensus       135 ~~~-------~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~----~~-~  199 (398)
T 1gc0_A          135 VDM-------ADLQALEAAMTPATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQR----PL-E  199 (398)
T ss_dssp             ECT-------TCHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCC----GG-G
T ss_pred             ECC-------CCHHHHHHhcCCCCeEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCCcccccCC----ch-h
Confidence            764       2789999999989999999999999999987   8999999999999999999999755421    22 1


Q ss_pred             cCCCccEEEEecCcccccccccce-EEEEeeCCCCcccchhHHH-HHHhhhh--ccCCcchHHHHHHHHHhhhccHHHHH
Q 038416          206 FGSIVPVITLGSISKRWIVPGWRL-GWLVTSDPNGILQNSGFVD-SIKGCLN--AASHPVTFIQAAVPRIVDETNEAFFA  281 (387)
Q Consensus       206 ~~~~~~~~~i~s~sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~  281 (387)
                      .   +..+++.|++|.++.+|.|+ |++++++        +.++ .+.....  .+.+.+++.++++...++.     +.
T Consensus       200 ~---~~d~~~~S~sK~~~~~~~~~~G~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~  263 (398)
T 1gc0_A          200 L---GADLVVHSATKYLSGHGDITAGIVVGSQ--------ALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKT-----LN  263 (398)
T ss_dssp             G---TCSEEEEETTTTTTCSSSCCCEEEEECH--------HHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTT-----HH
T ss_pred             h---CceEEEECCccccCCCCCCeEEEEEECh--------HHHHHHHHHHhhccCCCCCCHHHHHHHHhccch-----HH
Confidence            2   23488999999999999997 9998865        4444 4444332  3456777777777666654     34


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCC-------------CC---CceEEEEEecCcccccCCCcHHHHHHHHHHhcCeE
Q 038416          282 KIIGLLKETADICYERIKEIPCITCPV-------------KP---QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVI  345 (387)
Q Consensus       282 ~~~~~~~~~~~~~~~~l~~~~~~~~~~-------------~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~  345 (387)
                      .+.++..++++.+.+.|++++.+..+.             .+   ..+.++.+.++.        ..+....++.+.++.
T Consensus       264 ~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~l~~~~i~  335 (398)
T 1gc0_A          264 LRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG--------GIGAGRRFMNALQLF  335 (398)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT--------HHHHHHHHHHHCSSS
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC--------CHHHHHHHHHhCCCc
Confidence            556666677777777776654322110             11   234455556642        234455666777887


Q ss_pred             EEc---CCcc----------------------CC-CCeEEEEeeC--ChHhHHHHHHHHHH
Q 038416          346 ILP---GRTV----------------------GM-KNWLRIAFAA--EPATLEDGLERIKA  378 (387)
Q Consensus       346 v~~---g~~~----------------------~~-~~~~Ri~~~~--~~e~~~~~~~~l~~  378 (387)
                      +..   |+..                      +. ++++|+|++.  ++++++.+.+.|++
T Consensus       336 ~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~  396 (398)
T 1gc0_A          336 SRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKA  396 (398)
T ss_dssp             EECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred             eeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHh
Confidence            765   3210                      11 4799999976  34566666665544

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.96  E-value=1.2e-26  Score=217.18  Aligned_cols=312  Identities=14%  Similarity=0.125  Sum_probs=215.1

Q ss_pred             CCCCCCCCcHHHHHHHHHHhcCCCCCCCCCC--CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCC
Q 038416           19 LGVSLLSDSTVAEDAVVDALRTAHYNCYSPT--LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARP   96 (387)
Q Consensus        19 ~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~--~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~   96 (387)
                      +...+++.++.+.+++.   ... ...|+..  ....++|+.++++++        .+++++++|+++|+..++.+++++
T Consensus        27 s~~~~~~~~~~~~~~~~---~~~-~~~y~~~~~~~~~~l~~~la~~~g--------~~~~~~~~~gt~a~~~al~~l~~~   94 (412)
T 2cb1_A           27 VAAYGFKTLEEGQERFA---TGE-GYVYARQKDPTAKALEERLKALEG--------ALEAVVLASGQAATFAALLALLRP   94 (412)
T ss_dssp             CSBCCCSSHHHHHHHHH---HCC-SCSBTTTCCHHHHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHTTCCT
T ss_pred             cceeecCChHHHHHHhc---ccc-CcCcCCCCChHHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHhCC
Confidence            33457888888877764   222 2345542  457888999999883        348999999999999999999999


Q ss_pred             CCeEEEcCCCCcchHHH----hhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHH
Q 038416           97 GANILIPRPGYPLYEIH----AAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQK  172 (387)
Q Consensus        97 g~~vl~~~p~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~  172 (387)
                      ||+|+++.|+|.++...    ++  ..|.++..++.        |+++|++++++++++|++++|+||||.+++   +++
T Consensus        95 gd~vi~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~--------~~~~l~~~i~~~~~~v~~~~~~n~~G~~~~---l~~  161 (412)
T 2cb1_A           95 GDEVVAAKGLFGQTIGLFGQVLS--LMGVTVRYVDP--------EPEAVREALSAKTRAVFVETVANPALLVPD---LEA  161 (412)
T ss_dssp             TCEEEEETTCCHHHHHHHHHTTT--TTTCEEEEECS--------SHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHH
T ss_pred             CCEEEEeCCCchhHHHHHHHHHH--HcCCEEEEECC--------CHHHHHHHhccCCeEEEEeCCCCCCccccc---HHH
Confidence            99999999999875543    45  67888888864        389999999989999999999999999987   899


Q ss_pred             HHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCc------cc----
Q 038416          173 IARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGI------LQ----  242 (387)
Q Consensus       173 l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~------~~----  242 (387)
                      |.++|+++|+++|+|++|+.+.+..   .+. ..   +..+++.|++|+++.+|.|+|++++.+....      +.    
T Consensus       162 i~~l~~~~~~~li~D~~~~~~~~~~---~~~-~~---~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~  234 (412)
T 2cb1_A          162 LATLAEEAGVALVVDNTFGAAGALC---RPL-AW---GAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDL  234 (412)
T ss_dssp             HHHHHHHHTCEEEEECGGGTTTTSC---CGG-GG---TCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC--
T ss_pred             HHHHHHHcCCEEEEECCCccccccC---Ccc-cc---CCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccc
Confidence            9999999999999999999752211   121 12   3458999999999999999999988753210      00    


Q ss_pred             ----------chhHHHHHHhhh-h-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 038416          243 ----------NSGFVDSIKGCL-N-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKP  310 (387)
Q Consensus       243 ----------~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  310 (387)
                                ..++.+.++... . .+...++...+.+...++.     +..+.++..++.+.+.+.|.+.+++..+..|
T Consensus       235 ~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~-----l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p  309 (412)
T 2cb1_A          235 KGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLET-----VALRVARMSETARFLAERLQGHPKVKALRYP  309 (412)
T ss_dssp             -----HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGG-----HHHHHHHHHHHHHHHHHHHHTCTTCSEEECT
T ss_pred             cccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCch-----HHHHHHHHHHHHHHHHHHHHcCCCeeEEECC
Confidence                      003444444432 2 2223344444433333432     3455566677888888999888777633223


Q ss_pred             ----------------CceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCC---------ccC------------
Q 038416          311 ----------------QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGR---------TVG------------  353 (387)
Q Consensus       311 ----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~---------~~~------------  353 (387)
                                      ..+.++.+.+ .       +. +.+..++.+.||.+ +++         .+.            
T Consensus       310 ~~~~~p~~~~~~~~~~~~~~iv~~~~-~-------~~-~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~  379 (412)
T 2cb1_A          310 GLPEDPAHRNARKYLASGGPILTLDL-G-------DL-ERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEAR  379 (412)
T ss_dssp             TSTTCTTHHHHHHHCSSSCSEEEEEC-S-------SH-HHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHH
T ss_pred             CCCCCccHHHHHHhCCCCceEEEEEe-C-------CH-HHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHH
Confidence                            2344555555 2       22 33445567789998 763         221            


Q ss_pred             ----C-CCeEEEEeeC--ChHhHHHHHHHHH
Q 038416          354 ----M-KNWLRIAFAA--EPATLEDGLERIK  377 (387)
Q Consensus       354 ----~-~~~~Ri~~~~--~~e~~~~~~~~l~  377 (387)
                          . ++.+|+|++.  ++++++.+.+.|+
T Consensus       380 ~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~  410 (412)
T 2cb1_A          380 LQAGVTPGLVRVSVGLEDPLDLLALFEEALE  410 (412)
T ss_dssp             HHTTCCTTEEEEECCSSCHHHHHHHHHHHHH
T ss_pred             HhcCCCCCeEEEEeccCCHHHHHHHHHHHHh
Confidence                0 4789999975  4567777666664

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.96  E-value=3.1e-27  Score=223.74  Aligned_cols=338  Identities=13%  Similarity=-0.010  Sum_probs=234.1

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCC---CCEEEcCChHHHHHHHHHhhcC-----
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSP---EDVYLTLGCSQAIEISLSVLAR-----   95 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~---~~i~~~~g~~~a~~~~~~~l~~-----   95 (387)
                      .+.++.+.+++.+++... ..+|....+..++++.+.+++.+.+|.+.+.   ..+++|+|+++++..++.++..     
T Consensus        52 ~~~~~~v~e~~~~a~~~~-~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~  130 (452)
T 2dgk_A           52 TWDDENVHKLMDLSINKN-WIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKR  130 (452)
T ss_dssp             CCCCHHHHHHHHHTTTCB-TTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhccC-CCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHH
Confidence            356688999999888643 3355555577788888888888877744321   2489999999999999988753     


Q ss_pred             ---CC-----CeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           96 ---PG-----ANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        96 ---~g-----~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                         +|     ++|+++. +|..+...+.  ..|++++.+++++ +++.+|+++|++++++++++|++++|+||||.+.+ 
T Consensus       131 ~~~~G~~~~~~~vi~~~-~h~~~~~~~~--~~G~~v~~v~~~~-~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~-  205 (452)
T 2dgk_A          131 MEAAGKPTDKPNLVCGP-VQICWHKFAR--YWDVELREIPMRP-GQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEF-  205 (452)
T ss_dssp             HHHTTCCCSCCEEEESS-CCHHHHHHHH--HTTCEEEECCCBT-TBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCC-
T ss_pred             HHhcCCCCCCcEEEECC-CcHHHHHHHH--HcCceEEEEecCC-CCCeECHHHHHHHHhhCCEEEEEEcCCcCCcccCC-
Confidence               55     5899999 9999999999  9999999999864 35789999999999989999999999999999966 


Q ss_pred             HHHHHHHHHHHhc------CcEEeeccccccccc---CCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCC
Q 038416          168 QHLQKIARTARNL------GIIVIADEVYNHLAF---GSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPN  238 (387)
Q Consensus       168 ~~~~~l~~~~~~~------~~~li~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~  238 (387)
                        +++|.++|+++      |+++++|++|+.+..   .......+   ....-.+++.|++|+ ++++.++|+++++++.
T Consensus       206 --l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~---~~~~~d~~~~~~hK~-~~~~~~~G~~~~~~~~  279 (452)
T 2dgk_A          206 --PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDF---RLPRVKSISASGHKF-GLAPLGCGWVIWRDEE  279 (452)
T ss_dssp             --HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCST---TSTTEEEEEEETTTT-TCCCSSCEEEEESSGG
T ss_pred             --HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhc---CCCCCcEEEECcccc-cCCCCCeEEEEEcCHH
Confidence              78888888885      999999999998643   22111111   111223567789995 7888999999997532


Q ss_pred             CcccchhHHHHHHh---hh-----h--ccCCc---chHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 038416          239 GILQNSGFVDSIKG---CL-----N--AASHP---VTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCIT  305 (387)
Q Consensus       239 ~~~~~~~~~~~~~~---~~-----~--~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  305 (387)
                      .+      .+.+..   +.     .  ..++.   ....++++...+   ..+.+.++.++..++++++.+.|++++++.
T Consensus       280 ~~------~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~l---g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~  350 (452)
T 2dgk_A          280 AL------PQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRL---GREGYTKVQNASYQVAAYLADEIAKLGPYE  350 (452)
T ss_dssp             GS------CGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTTSSEE
T ss_pred             HH------HHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence            11      121111   00     0  01111   222333333333   346678889999999999999999987787


Q ss_pred             CCCCC----CceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCC---ccCCCCeEEEEee--CChHhHHHHHHHH
Q 038416          306 CPVKP----QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGR---TVGMKNWLRIAFA--AEPATLEDGLERI  376 (387)
Q Consensus       306 ~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~---~~~~~~~~Ri~~~--~~~e~~~~~~~~l  376 (387)
                      ++ .|    ....++.++++...... .+..++...| .++||.+....   ......++|++++  .++++++.+++.|
T Consensus       351 ~~-~~~~~~~~~~~v~f~~~~~~~~~-~~~~~l~~~L-~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l  427 (452)
T 2dgk_A          351 FI-CTGRPDEGIPAVCFKLKDGEDPG-YTLYDLSERL-RLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDY  427 (452)
T ss_dssp             EE-EECCTTTBSSEEEEEECTTCCCS-CCHHHHHHHH-HHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             Ee-cCCCCCCCeEEEEEEecCccccc-CCHHHHHHHH-HhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHH
Confidence            54 33    23445666665310000 1235676666 45698643211   1112458999995  4689999999999


Q ss_pred             HHHHHHhhh
Q 038416          377 KAFCQRHAK  385 (387)
Q Consensus       377 ~~~~~~~~~  385 (387)
                      +++++++++
T Consensus       428 ~~~~~~~~~  436 (452)
T 2dgk_A          428 KASLKYLSD  436 (452)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            998877654

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.96  E-value=4.5e-27  Score=218.19  Aligned_cols=285  Identities=18%  Similarity=0.180  Sum_probs=201.9

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHH----HhhccCCCceeee
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEI----HAAGSNNNLEARH  125 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~----~~~~~~~g~~~~~  125 (387)
                      .+..++|+.+++++.      .+ +.+++++ +++++..++.++.++||+|+++.|+|++...    .++  ..|.++..
T Consensus        52 ~~~~~l~~~la~~~~------~~-~~i~~~s-Gt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~--~~g~~~~~  121 (386)
T 1cs1_A           52 PTRDVVQRALAELEG------GA-GAVLTNT-GMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAK--RGCYRVLF  121 (386)
T ss_dssp             HHHHHHHHHHHHHHT------CS-EEEEESS-HHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHT--TTSCEEEE
T ss_pred             ccHHHHHHHHHHHhC------CC-cEEEeCC-HHHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHH--hcCCEEEE
Confidence            456889999999984      22 5566655 4999999999999999999999999987443    346  78888888


Q ss_pred             eccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccc
Q 038416          126 YDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV  205 (387)
Q Consensus       126 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~  205 (387)
                      ++.+       |++++++++++++++|++++|+||||.+++   +++|.++|+++|+++|+|++|+.+.+.    .++ .
T Consensus       122 ~~~~-------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~----~~~-~  186 (386)
T 1cs1_A          122 VDQG-------DEQALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQ----NPL-A  186 (386)
T ss_dssp             ECTT-------CHHHHHHHHHTCCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC----CGG-G
T ss_pred             eCCC-------CHHHHHHhhccCCcEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccC----Ccc-c
Confidence            8752       789999999889999999999999999987   889999999999999999999976543    122 2


Q ss_pred             cCCCccEEEEecCcccccccccce-EEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHH
Q 038416          206 FGSIVPVITLGSISKRWIVPGWRL-GWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKI  283 (387)
Q Consensus       206 ~~~~~~~~~i~s~sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~  283 (387)
                      +   +..+++.|++|+++.+|.++ ||+++++       +++++.+..... .+.+.+++.++++...++.     +..+
T Consensus       187 ~---~~di~~~s~sK~~~~~~~~~~G~~~~~~-------~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~  251 (386)
T 1cs1_A          187 L---GADLVLHSCTKYLNGHSDVVAGVVIAKD-------PDVVTELAWWANNIGVTGGAFDSYLLLRGLRT-----LVPR  251 (386)
T ss_dssp             G---TCSEEEEETTTTTTCSSCCCCEEEEESS-------HHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTT-----HHHH
T ss_pred             c---CceEEEEcCcccccCCCCceeEEEEeCc-------HHHHHHHHHHHHhcCCCCCHHHHHHHHhcccH-----HHHH
Confidence            2   34588999999998899886 9999864       246677765543 3345667776666555543     4555


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCC----------------CceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEE
Q 038416          284 IGLLKETADICYERIKEIPCITCPVKP----------------QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIIL  347 (387)
Q Consensus       284 ~~~~~~~~~~~~~~l~~~~~~~~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~  347 (387)
                      .+.+..+++.+.+.+++++.+.....+                ..+.++.+.++.       . .+.+...+.+.||.+.
T Consensus       252 ~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~l~~~gi~~~  323 (386)
T 1cs1_A          252 MELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG-------D-EQTLRRFLGGLSLFTL  323 (386)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS-------C-HHHHHHHHHTCSSSEE
T ss_pred             HHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECC-------C-HHHHHHHHHhCCcceE
Confidence            666777777887777766433211011                124555556642       2 2334445577899887


Q ss_pred             cCCc---------------c----------CC-CCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          348 PGRT---------------V----------GM-KNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       348 ~g~~---------------~----------~~-~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      +...               +          +. ++++|++++.  ++.++.+++|.+++++..
T Consensus       324 ~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~--~~~~~~i~~l~~al~~~~  384 (386)
T 1cs1_A          324 AESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI--EDGEDLIADLENGFRAAN  384 (386)
T ss_dssp             BSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHHHHHHHT
T ss_pred             cccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEcc--CCHHHHHHHHHHHHHHhh
Confidence            4211               0          11 4799999976  455566666666666554

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.96  E-value=1.3e-27  Score=222.02  Aligned_cols=284  Identities=21%  Similarity=0.183  Sum_probs=206.7

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHh----hccCCCceeee
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHA----AGSNNNLEARH  125 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~----~~~~~g~~~~~  125 (387)
                      ....++|+.++++++        .+++++++|+++|+..++.+++++||+|+++.|+|+++...+    .  ..|.++..
T Consensus        66 ~~~~~l~~~la~~~g--------~~~~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~--~~g~~~~~  135 (392)
T 3qhx_A           66 PTRTALEAALAAVED--------AAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFT--GWNVEYTP  135 (392)
T ss_dssp             HHHHHHHHHHHHHTT--------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGG--GGTCEEEE
T ss_pred             hHHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHH--hcCcEEEE
Confidence            345788888888872        247899999999999999999999999999999998776555    5  67888888


Q ss_pred             eccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccc
Q 038416          126 YDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV  205 (387)
Q Consensus       126 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~  205 (387)
                      ++.+       |++++++++++++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|+.+.. .   .++ .
T Consensus       136 v~~~-------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~~~-~---~~~-~  200 (392)
T 3qhx_A          136 VALA-------DLDAVRAAIRPTTRLIWVETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASPAL-Q---QPL-S  200 (392)
T ss_dssp             ECTT-------CHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTT-C---CGG-G
T ss_pred             eCCC-------CHHHHHHhhCCCCeEEEEECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCccccc-C---ChH-H
Confidence            8752       799999999999999999999999999977   88999999999999999999985321 1   111 2


Q ss_pred             cCCCccEEEEecCcccccccc-cceEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHH
Q 038416          206 FGSIVPVITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKI  283 (387)
Q Consensus       206 ~~~~~~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~  283 (387)
                      +.   ..+++.|++|.++.+| .++|++++++       +++.+.+..... .+..++++.++++...++.     +..+
T Consensus       201 ~~---~di~~~S~sK~lg~~g~~~~G~v~~~~-------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~-----l~~~  265 (392)
T 3qhx_A          201 LG---ADVVLHSTTKYIGGHSDVVGGALVTND-------EELDQSFAFLQNGAGAVPGPFDAYLTMRGLKT-----LVLR  265 (392)
T ss_dssp             GT---CSEEEEETTTTTTCSSCCCCEEEEESC-------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-----HHHH
T ss_pred             hC---CcEEEEcCccccCCCCCceEEEEEECc-------HHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhH-----HHHH
Confidence            22   3488999999998877 7899999864       257777766543 4566777777777666654     4555


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCC----------------ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEE
Q 038416          284 IGLLKETADICYERIKEIPCITCPVKPQ----------------GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIIL  347 (387)
Q Consensus       284 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~  347 (387)
                      .+++.++++.+.+.|++.|.+..+..|.                .|.++++.++...    .....++.. ++..++.+.
T Consensus       266 ~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~----~~~~~~~~~-l~~~~~~~s  340 (392)
T 3qhx_A          266 MQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGR----TAAEQLCAK-TNIFILAES  340 (392)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCH----HHHHHHHHH-CSSSEECSC
T ss_pred             HHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcH----HHHHHHHHh-CCCceECCC
Confidence            6777778888888888776553332221                2557777775310    123344443 355567766


Q ss_pred             cCCccC--------------------CCCeEEEEeeCChHhHHHHHHHHHHHH
Q 038416          348 PGRTVG--------------------MKNWLRIAFAAEPATLEDGLERIKAFC  380 (387)
Q Consensus       348 ~g~~~~--------------------~~~~~Ri~~~~~~e~~~~~~~~l~~~~  380 (387)
                      .|+.+.                    .++.+|+|++.  |+.++.++.|.+++
T Consensus       341 ~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~--e~~~~~i~~l~~al  391 (392)
T 3qhx_A          341 LGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGI--EDVADLLDDLKQAL  391 (392)
T ss_dssp             CCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred             CCCCCceeeCcccccccccCHHHcCCCCCeEEEEecc--CCHHHHHHHHHHHh
Confidence            665421                    14679999986  45555666665554

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.96  E-value=4.7e-28  Score=230.26  Aligned_cols=329  Identities=15%  Similarity=0.109  Sum_probs=221.1

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC--------CC
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR--------PG   97 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--------~g   97 (387)
                      .+|.+.+|+++++....  .+....+..+.+.++++++.+..+  .+.++|++++|+++|+..+++.+.+        .+
T Consensus        71 ~~p~v~~A~~~~l~~~~--~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~  146 (476)
T 3i5t_A           71 GRREIVDAMAHQAMVLP--YASPWYMATSPAARLAEKIATLTP--GDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQK  146 (476)
T ss_dssp             CCHHHHHHHHHHHHHCC--CCCTTTCBCHHHHHHHHHHHTTSS--TTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTC
T ss_pred             CCHHHHHHHHHHHHhcc--CcccCccCCHHHHHHHHHHHhcCC--CCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCC
Confidence            58999999999987632  122223556788888888887654  3457999999999999999999863        24


Q ss_pred             CeEEEcCCCCcchHHHhhccCCCce-------------eeeeccC--CCCCccCC--------hhhHHHhhc----cCce
Q 038416           98 ANILIPRPGYPLYEIHAAGSNNNLE-------------ARHYDLL--PEKRWEVD--------LDGVEALAD----ENTV  150 (387)
Q Consensus        98 ~~vl~~~p~~~~~~~~~~~~~~g~~-------------~~~~~~~--~~~~~~~~--------~~~l~~~~~----~~~~  150 (387)
                      +.|++.+|+|+++...+.  ..+..             +..++.+  ... +..+        +++|++.++    +++.
T Consensus       147 ~~vi~~~~~yHg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~le~~i~~~~~~~~a  223 (476)
T 3i5t_A          147 KRIIVRYDGYHGSTALTA--ACTGRTGNWPNFDIAQDRISFLSSPNPRHA-GNRSQEAFLDDLVQEFEDRIESLGPDTIA  223 (476)
T ss_dssp             CEEEEETTCCCCSSHHHH--HTCCCGGGCTTSCCCCTTEEEECCCCGGGC-TTSCHHHHHHHHHHHHHHHHHHHCGGGEE
T ss_pred             CEEEEEcCCcCcCChhhc--cccCChhhccccCCCCCCcEEeCCCccccc-CCCchHHHHHHHHHHHHHHHHhcCCCCEE
Confidence            799999999998765444  22221             1122211  111 1122        678888775    3455


Q ss_pred             EEEEeCCCCCccc-cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcccc-ccCCCccEEEEecCcccccccc-c
Q 038416          151 AIVIINPGNPCGN-VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMG-VFGSIVPVITLGSISKRWIVPG-W  227 (387)
Q Consensus       151 ~v~l~~p~nptG~-~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~s~sK~~~~~g-~  227 (387)
                      +|++..++|++|. .++.+++++|.++|++||+++|+||+|.+|...|..+. +. .+....+   +.++||+++ .| +
T Consensus       224 avi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~-~~~~~~v~pd---i~t~sK~l~-~G~~  298 (476)
T 3i5t_A          224 AFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFA-SEKVFGVVPD---IITFAKGVT-SGYV  298 (476)
T ss_dssp             EEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCH-HHHTTCCCCS---EEEECGGGG-TTSS
T ss_pred             EEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCcee-eecccCCCcc---hhhhhhhhc-CCCc
Confidence            5666556778886 78888999999999999999999999999876664321 12 2222122   236889976 48 9


Q ss_pred             ceEEEEeeCCCCcccchhHHHHHHhh-------h-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhh
Q 038416          228 RLGWLVTSDPNGILQNSGFVDSIKGC-------L-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIK  299 (387)
Q Consensus       228 r~G~i~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  299 (387)
                      |+|++++++        ++++.+...       . ..+++.++++++++.++|+...+   +...++++++.+++++.|+
T Consensus       299 plg~v~~~~--------~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~---~~~~~~~~~~~~~l~~~L~  367 (476)
T 3i5t_A          299 PLGGLAISE--------AVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMER---EGIVDQAREMADYFAAALA  367 (476)
T ss_dssp             CCEEEEECH--------HHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECH--------HHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHH
Confidence            999999976        777777653       1 24667889999998888875332   2345556666666666666


Q ss_pred             cC---CCCCCCCCCCceEEEEEecCcccccC--CC----cHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHh
Q 038416          300 EI---PCITCPVKPQGAMFVMVKLNVSMLED--IG----DDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPAT  368 (387)
Q Consensus       300 ~~---~~~~~~~~~~~g~~~~~~~~~~~~~~--~~----~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~  368 (387)
                      .+   |.+. . .+..|.++++.+.......  +.    ....+...+ .++||.+.|.     .+++||++  ..++++
T Consensus       368 ~l~~~~~v~-~-v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~-----g~~iRi~p~l~~t~e~  439 (476)
T 3i5t_A          368 SLRDLPGVA-E-TRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERC-FELGLIVRPL-----GDLCVISPPLIISRAQ  439 (476)
T ss_dssp             TTTTSTTEE-E-EEEETTEEEEEECCC-----CCHHHHHHHHHHHHHH-HHTTEECEEE-----TTEEEECCCTTCCHHH
T ss_pred             HHhcCCCeE-E-EEecCceeEEEEecCccccccccchhHHHHHHHHHH-HHCCCEEEec-----CCEEEEECCCCCCHHH
Confidence            54   3333 1 2334556677664321000  00    023455555 5569999884     28999995  579999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 038416          369 LEDGLERIKAFCQRHAK  385 (387)
Q Consensus       369 ~~~~~~~l~~~~~~~~~  385 (387)
                      +++++++|+++++++.+
T Consensus       440 i~~~l~~l~~~l~~~~~  456 (476)
T 3i5t_A          440 IDEMVAIMRQAITEVSA  456 (476)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999987664

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.96  E-value=5e-27  Score=220.70  Aligned_cols=323  Identities=15%  Similarity=0.091  Sum_probs=205.4

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCC------CCCCcHHHH----HHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC
Q 038416           26 DSTVAEDAVVDALRTAHYNCYS------PTLGVPSAR----RGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR   95 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~------~~~~~~~lr----~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~   95 (387)
                      .++.+.+++.+.+.+....+|+      .......++    +.+++++    +  .+. ..++++|+++++..++.++++
T Consensus        44 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~----~--~~~-~~v~~~~Gs~a~~~al~~~~~  116 (425)
T 3ecd_A           44 VSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLF----N--AGH-ANVQPHSGAQANGAVMLALAK  116 (425)
T ss_dssp             CCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHH----T--CSE-EECCCSSHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHh----C--CCC-ceeecCchHHHHHHHHHHccC
Confidence            3999999999988543211222      111111222    3344444    2  222 234588899999999999999


Q ss_pred             CCCeEEEcCCCCcc---hHHHhhccCCCc--eeeeeccCCCCCccCChhhHHHhhc-cCceEEEEeCCCCCccccCCHHH
Q 038416           96 PGANILIPRPGYPL---YEIHAAGSNNNL--EARHYDLLPEKRWEVDLDGVEALAD-ENTVAIVIINPGNPCGNVFSYQH  169 (387)
Q Consensus        96 ~g~~vl~~~p~~~~---~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~v~l~~p~nptG~~~~~~~  169 (387)
                      +||+|+++.|+|++   +.....  ..|.  .+..++.++ +++.+|+++|+++++ +++++|++++|+||+  .   .+
T Consensus       117 ~gd~Vi~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~--~---~~  188 (425)
T 3ecd_A          117 PGDTVLGMSLDAGGHLTHGAKPA--LSGKWFNALQYGVSR-DTMLIDYDQVEALAQQHKPSLIIAGFSAYPR--K---LD  188 (425)
T ss_dssp             TTCEEEEECC--------------------CEEEEECCCT-TTSSCCHHHHHHHHHHHCCSEEEEECSCCCS--C---CC
T ss_pred             CCCEEEEcccccccceecchhhh--hcccceeeeecCCCc-ccCccCHHHHHHHHhhcCCcEEEEccccCCC--c---CC
Confidence            99999999999987   222222  3444  444555432 346899999999986 588999999999864  3   33


Q ss_pred             HHHHHHHHHhcCcEEeeccccc-ccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHH
Q 038416          170 LQKIARTARNLGIIVIADEVYN-HLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD  248 (387)
Q Consensus       170 ~~~l~~~~~~~~~~li~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~  248 (387)
                      +++|.++|++||+++|+|++|. ++.+.+.....+..  .   .+++.|+||++  +|.|.||+++++       +++.+
T Consensus       189 l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~--~---di~~~s~sK~l--~g~~~g~~~~~~-------~~~~~  254 (425)
T 3ecd_A          189 FARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEH--A---HVVTSTTHKTL--RGPRGGFVLTND-------EEIAK  254 (425)
T ss_dssp             HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGT--C---SEEEEESSGGG--CCCSCEEEEESC-------HHHHH
T ss_pred             HHHHHHHHHHcCCEEEEECcChHhhhhcccccCchhc--C---cEEEecCCccc--CCCCcEEEEeCC-------HHHHH
Confidence            7899999999999999999965 44444433333222  1   27899999985  678899999874       24666


Q ss_pred             HHHhhhhc--cCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccccc
Q 038416          249 SIKGCLNA--ASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE  326 (387)
Q Consensus       249 ~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~  326 (387)
                      .+......  ..+++.....++..++....+..+++..+++.++++.+.+.|++. ++.++..+..++++|+.++...  
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~--  331 (425)
T 3ecd_A          255 KINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG-GVDLVTGGTDNHLLLVDLRPKG--  331 (425)
T ss_dssp             HHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGT--
T ss_pred             HHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC-CCeeccCCCCceEEEEEeCCCC--
Confidence            66554321  224444444544444443333557788888999999999999886 6764422346778888775321  


Q ss_pred             CCCcHHHHHHHHHHhcCeEEE----cCCccC--CCCeEEEEee------CChHhHHHHHHHHHHHHHHh
Q 038416          327 DIGDDLEFCLKLAKEESVIIL----PGRTVG--MKNWLRIAFA------AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       327 ~~~~~~~~~~~ll~~~gi~v~----~g~~~~--~~~~~Ri~~~------~~~e~~~~~~~~l~~~~~~~  383 (387)
                        .+. +.+...++++||.+.    ||..+.  ..+++|+++.      .++++++++++.|++++++.
T Consensus       332 --~~~-~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~  397 (425)
T 3ecd_A          332 --LKG-AQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL  397 (425)
T ss_dssp             --CCH-HHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             --CCH-HHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence              133 444555577899999    443211  2468999962      24899999999999998775

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.96  E-value=3e-27  Score=220.90  Aligned_cols=290  Identities=17%  Similarity=0.106  Sum_probs=200.6

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHH----HhhccCCCceeee
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEI----HAAGSNNNLEARH  125 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~----~~~~~~~g~~~~~  125 (387)
                      ....+|++.++++++        .+..++++++++|+..++.+++++||+|+++.|+|+++..    .+.  ..|.++..
T Consensus        82 p~~~~le~~lA~l~g--------~~~~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~--~~G~~~~~  151 (430)
T 3ri6_A           82 PTVEDLEQRLKNLTG--------ALGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLP--SFGIEVRF  151 (430)
T ss_dssp             HHHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHH--HTTCEEEE
T ss_pred             HHHHHHHHHHHHHHC--------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHH--HcCCEEEE
Confidence            456788999998883        2446777778899999999999999999999999998776    566  78999988


Q ss_pred             eccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccc
Q 038416          126 YDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV  205 (387)
Q Consensus       126 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~  205 (387)
                      ++.+       |++++++++++++++|++++|+||+|.+++   +++|.++|+++|+++|+|++|+...+    ..+. .
T Consensus       152 v~~~-------d~~~l~~ai~~~t~~v~~e~p~NptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~----~~~~-~  216 (430)
T 3ri6_A          152 VDVM-------DSLAVEHACDETTKLLFLETISNPQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYL----LEAK-R  216 (430)
T ss_dssp             ECTT-------CHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTT----CCGG-G
T ss_pred             eCCC-------CHHHHHHhhCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc----CChH-H
Confidence            8753       799999999999999999999999999987   77889999999999999999985332    1111 1


Q ss_pred             cCCCccEEEEecCcccccccccceEEEEe-eCCCCcc------------cchhHHHHHHhh--hhccCCcchHHHHHHHH
Q 038416          206 FGSIVPVITLGSISKRWIVPGWRLGWLVT-SDPNGIL------------QNSGFVDSIKGC--LNAASHPVTFIQAAVPR  270 (387)
Q Consensus       206 ~~~~~~~~~i~s~sK~~~~~g~r~G~i~~-~~~~~~~------------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  270 (387)
                      ..   ..+++.|++|.++.+|..+|.+++ ++...+.            ....++++.+..  .......++...+.+..
T Consensus       217 ~g---~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~~a~l~l~  293 (430)
T 3ri6_A          217 LG---VDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPHNAYLQSL  293 (430)
T ss_dssp             GT---CSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHH
T ss_pred             cC---CEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence            22   248899999998877655555554 2221110            001223333322  12333444444333332


Q ss_pred             HhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----------------ceEEEEEecCcccccCCCcHHHH
Q 038416          271 IVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ----------------GAMFVMVKLNVSMLEDIGDDLEF  334 (387)
Q Consensus       271 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~  334 (387)
                      .+     +.+..+.++..++++.+.+.|++.|.+..+..|.                +|+++|+.++..     .+...+
T Consensus       294 ~l-----~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~-----~~~~~~  363 (430)
T 3ri6_A          294 GL-----ETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESK-----EASYRF  363 (430)
T ss_dssp             HH-----HHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSH-----HHHHHH
T ss_pred             hh-----hhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCH-----HHHHHH
Confidence            22     3466677888889999999999888777555554                444888888621     123344


Q ss_pred             HHHHHHhcCeEEEcCCccC-----------------------CCCeEEEEeeCChHhHHHHHHHHHHHH
Q 038416          335 CLKLAKEESVIILPGRTVG-----------------------MKNWLRIAFAAEPATLEDGLERIKAFC  380 (387)
Q Consensus       335 ~~~ll~~~gi~v~~g~~~~-----------------------~~~~~Ri~~~~~~e~~~~~~~~l~~~~  380 (387)
                      +..+ +-.++.+..|..+.                       .++++|+|++.  |+.+++++.|++++
T Consensus       364 ~~~l-~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~--E~~~dl~~dl~~al  429 (430)
T 3ri6_A          364 MDAL-KLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGI--EEIEDLKEDILQAL  429 (430)
T ss_dssp             HHHC-SSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred             HHhC-CcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHhh
Confidence            4443 44455566665443                       14689999987  56666667766665

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.96  E-value=4.1e-28  Score=228.76  Aligned_cols=336  Identities=14%  Similarity=0.064  Sum_probs=216.0

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      .+++.+.|.+....++ .+|.+.+++.+++.......|+. ....++++.+++++    +   +.++|++++|+++|+..
T Consensus        57 ~~lD~~~~~~~~~lG~-~~~~v~~a~~~~~~~~~~~~~~~-~~~~~l~~~la~~~----~---~~~~v~~~~sgseA~~~  127 (434)
T 2epj_A           57 RIVDLVLAYGPLILGH-KHPRVLEAVEEALARGWLYGAPG-EAEVLLAEKILGYV----K---RGGMIRFVNSGTEATMT  127 (434)
T ss_dssp             EEEESSGGGTTCTTCB-TCHHHHHHHHHHHHTCSCCSSCC-HHHHHHHHHHHHHH----C---TTCEEEEESSHHHHHHH
T ss_pred             EEEEcccchhcccCCC-CCHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHhC----C---CCCEEEEeCCHHHHHHH
Confidence            3455555443223233 78999999999998642223322 12344455555444    2   46899999999999999


Q ss_pred             HHHh---hcCCCCeEEEcCCCCcchHHHhhcc------------CCCc------eeeeeccCCCCCccCChhhHHHhhcc
Q 038416           89 SLSV---LARPGANILIPRPGYPLYEIHAAGS------------NNNL------EARHYDLLPEKRWEVDLDGVEALADE  147 (387)
Q Consensus        89 ~~~~---l~~~g~~vl~~~p~~~~~~~~~~~~------------~~g~------~~~~~~~~~~~~~~~~~~~l~~~~~~  147 (387)
                      +++.   +. +++.|++..|+|+++...+...            ..|.      .+..++.       .|+++|+++++.
T Consensus       128 al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~  199 (434)
T 2epj_A          128 AIRLARGYT-GRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-------NDVEALERVFAE  199 (434)
T ss_dssp             HHHHHHHHH-CCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-------TCHHHHHHHHHH
T ss_pred             HHHHHHHhh-CCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-------CCHHHHHHHHHh
Confidence            9987   44 4578888899998754432200            1122      1223322       278999998863


Q ss_pred             --CceEEEEeCC-CCCccccC-CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCccccc
Q 038416          148 --NTVAIVIINP-GNPCGNVF-SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWI  223 (387)
Q Consensus       148 --~~~~v~l~~p-~nptG~~~-~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~  223 (387)
                        ....+++++| +++||.++ +.+++++|.++|++||+++|+||+|+++. .+.. ..+..+....+   +.|+||.++
T Consensus       200 ~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~-~g~~-~~~~~~~~~~d---i~s~sK~l~  274 (434)
T 2epj_A          200 YGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFR-LGLE-GAQGYFNIEGD---IIVLGKIIG  274 (434)
T ss_dssp             HGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTT-SSTT-HHHHHHTCCCS---EEEEEGGGG
T ss_pred             CCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhcee-CCcc-hhhHHhCCCCC---eeeecchhc
Confidence              2344555666 56799866 69999999999999999999999999873 3321 11111111111   348999987


Q ss_pred             ccccceEEEEeeCCCCcccchhHHHHHHhh----hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhh
Q 038416          224 VPGWRLGWLVTSDPNGILQNSGFVDSIKGC----LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIK  299 (387)
Q Consensus       224 ~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  299 (387)
                      . |+|+||+++++        ++++.+...    ...+++.+++++.++.++|+...+   ++..++++++++++++.|+
T Consensus       275 ~-G~~~G~v~~~~--------~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~---~~~~~~~~~~~~~l~~~L~  342 (434)
T 2epj_A          275 G-GFPVGAVAGSR--------EVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEE---EPVYSVSREAAKALEEAAS  342 (434)
T ss_dssp             T-TSSCEEEEECH--------HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHH
T ss_pred             C-CcceeeeeecH--------HHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHH
Confidence            6 89999999975        666665541    123456788888888877765322   3455666667777777666


Q ss_pred             cCC---CCCCCCCCCceEEEEEecCcccccC--------CCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHh
Q 038416          300 EIP---CITCPVKPQGAMFVMVKLNVSMLED--------IGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPAT  368 (387)
Q Consensus       300 ~~~---~~~~~~~~~~g~~~~~~~~~~~~~~--------~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~  368 (387)
                      ++.   ++... .+..|.++|+.++......        .....++...+ .++||.+.|+..    ..+|+++..++++
T Consensus       343 ~~~~~~~~~~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~----~~~~~~~~~t~e~  416 (434)
T 2epj_A          343 EVLDRTGLPYT-INRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEM-LRRGVFIAPSNL----EAVFTGLPHQGEA  416 (434)
T ss_dssp             HHHHHHTCCEE-EEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHH-HHTTEECCSSTT----SCEECCTTCSHHH
T ss_pred             HHHhhCCCcEE-EEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHH-HHCCeEEeccCC----CcEEEeccCCHHH
Confidence            531   23211 2445678888875310000        01234566666 467999998752    4577777789999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 038416          369 LEDGLERIKAFCQRHA  384 (387)
Q Consensus       369 ~~~~~~~l~~~~~~~~  384 (387)
                      +++++++|+++++++.
T Consensus       417 i~~~l~~l~~~l~~~~  432 (434)
T 2epj_A          417 LEIAVEGLRSSLKTVL  432 (434)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999988764

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.96  E-value=6.4e-27  Score=219.28  Aligned_cols=284  Identities=15%  Similarity=0.102  Sum_probs=202.1

Q ss_pred             CcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHH----hhccCCCceeeee
Q 038416           51 GVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIH----AAGSNNNLEARHY  126 (387)
Q Consensus        51 ~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~----~~~~~~g~~~~~~  126 (387)
                      ...++|+.++++++      ..  +.++++++++|+..++.+++++||+|+++.+.|+++...    +.  ..|.++..+
T Consensus       115 ~~~~l~~~lA~l~g------~~--~~v~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~--~~G~~v~~v  184 (445)
T 1qgn_A          115 TTVVLEEKISALEG------AE--STLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILP--KMGITATVI  184 (445)
T ss_dssp             HHHHHHHHHHHHHT------CS--EEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGG--GGTCEEEEE
T ss_pred             HHHHHHHHHHHHhC------CC--cEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHH--HcCCEEEEe
Confidence            45688999999883      22  444445556999999999999999999999999986653    55  678898888


Q ss_pred             ccCCCCCccCChhhHHHhhccCc-eEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccc
Q 038416          127 DLLPEKRWEVDLDGVEALADENT-VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV  205 (387)
Q Consensus       127 ~~~~~~~~~~~~~~l~~~~~~~~-~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~  205 (387)
                      +.+       |++++++++++++ ++|++++|+||||.+++   +++|.++|+++|+++|+|++|+....    ..++ .
T Consensus       185 ~~~-------d~~~l~~ai~~~tv~lV~le~p~NptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~----~~~~-~  249 (445)
T 1qgn_A          185 DPA-------DVGALELALNQKKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLN----QKAL-A  249 (445)
T ss_dssp             CSS-------CHHHHHHHHHHSCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTT----CCTT-T
T ss_pred             CCC-------CHHHHHHHhccCCCCEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCccccc----CCcc-c
Confidence            752       7999999999899 99999999999999987   78899999999999999999985432    1121 2


Q ss_pred             cCCCccEEEEecCcccccccc-cceEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHH
Q 038416          206 FGSIVPVITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKI  283 (387)
Q Consensus       206 ~~~~~~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~  283 (387)
                      +.   ..+++.|++|.++..| .++|++++++        ++++.+..... .+...+++..+.+...++.     +..+
T Consensus       250 ~g---~Div~~S~sK~~gg~gd~~~G~l~~~~--------~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~~-----l~~r  313 (445)
T 1qgn_A          250 LG---ADLVLHSATKFLGGHNDVLAGCISGPL--------KLVSEIRNLHHILGGALNPNAAYLIIRGMKT-----LHLR  313 (445)
T ss_dssp             TT---CSEEEECTTTTTTCSSSCCCEEEEECH--------HHHHHHHHHHHHHCCCCCHHHHHHHHHHGGG-----HHHH
T ss_pred             cC---CEEEEECCcccccccccceEEEEEECH--------HHHHHHHHHHHHhCCCCCHHHHHHHHHhHHH-----HHHH
Confidence            22   3488999999987655 4799999875        67777765543 3344555555555444443     4555


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCC----------------CceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEE
Q 038416          284 IGLLKETADICYERIKEIPCITCPVKP----------------QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIIL  347 (387)
Q Consensus       284 ~~~~~~~~~~~~~~l~~~~~~~~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~  347 (387)
                      .+++.++++.+.+.|+++|++..+..|                ..+.++++.++..    ..+...++..+ +..++.++
T Consensus       314 ~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~----~~~~~~~l~~l-~~~~i~~s  388 (445)
T 1qgn_A          314 VQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGD----LLTTAKFVDAL-KIPYIAPS  388 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSC----HHHHHHHHHHC-SSSEECSC
T ss_pred             HHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCC----HHHHHHHHHhC-CCceEecc
Confidence            666777788888899888766323233                1456777777531    00123344432 33366666


Q ss_pred             cCCccC----------------------C-CCeEEEEeeCChHhHHHHHHHHHHHHHH
Q 038416          348 PGRTVG----------------------M-KNWLRIAFAAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       348 ~g~~~~----------------------~-~~~~Ri~~~~~~e~~~~~~~~l~~~~~~  382 (387)
                      .|+.+.                      . ++.+|+|++.  |+++.+++.|++++++
T Consensus       389 ~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG~--Edid~li~~L~~al~~  444 (445)
T 1qgn_A          389 FGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGV--EDFDDLKADILQALDS  444 (445)
T ss_dssp             CCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCS--SCHHHHHHHHHHHHHH
T ss_pred             CCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHhh
Confidence            665431                      1 3689999985  6899999999988864

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.96  E-value=7.7e-27  Score=216.63  Aligned_cols=281  Identities=17%  Similarity=0.134  Sum_probs=201.3

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHH----hhccCCCceeee
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIH----AAGSNNNLEARH  125 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~----~~~~~~g~~~~~  125 (387)
                      ....++++.++++++      .  +++++++++++|+..++.+++++||+|+++.|+|+++...    ++  ..|.++..
T Consensus        59 ~~~~~l~~~la~~~g------~--~~~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~--~~g~~~~~  128 (389)
T 3acz_A           59 PTVEQFEEMVCSIEG------A--AGSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLP--RFGIEVDL  128 (389)
T ss_dssp             HHHHHHHHHHHHHHT------C--SEEEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHH--HTTCEEEE
T ss_pred             hHHHHHHHHHHHHhC------C--CeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHH--HcCCEEEE
Confidence            456789999999883      2  3677777788999999999999999999999999986555    46  78999988


Q ss_pred             eccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccc
Q 038416          126 YDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV  205 (387)
Q Consensus       126 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~  205 (387)
                      ++.       .|++++++++++++++|++++|+||||.+++   +++|.++|+++|+++|+|++|+.+.+.    .++. 
T Consensus       129 v~~-------~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~~----~~~~-  193 (389)
T 3acz_A          129 IDT-------SDVEKVKAAWKPNTKMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCFL----KPLE-  193 (389)
T ss_dssp             ECT-------TCHHHHHHTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTC----CGGG-
T ss_pred             ECC-------CCHHHHHHhcCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccc----Cccc-
Confidence            875       3789999999989999999999999999987   889999999999999999999875431    1221 


Q ss_pred             cCCCccEEEEecCcccccccccce-EEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHH
Q 038416          206 FGSIVPVITLGSISKRWIVPGWRL-GWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKI  283 (387)
Q Consensus       206 ~~~~~~~~~i~s~sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~  283 (387)
                      +   +..+++.|++|.++.+|.|+ ||+++++       +++++.++.... .+.+.++..++++...++.     +..+
T Consensus       194 ~---~~di~~~S~sK~~~~~~~~~~G~v~~~~-------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~-----l~~r  258 (389)
T 3acz_A          194 L---GADIALHSVSKYINGHGDVIGGVSSAKT-------AEDIATIKFYRKDAGSLMAPMDAFLCARGMKT-----LPIR  258 (389)
T ss_dssp             T---TCSEEEEETTTTTTCSSCCCCEEEEESS-------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-----HHHH
T ss_pred             c---CCeEEEECChhhccCCCCceeEEEEECc-------HHHHHHHHHHHHhcCCCCCHHHHHHHHcCccH-----HHHH
Confidence            2   34588999999999999998 9999863       146666665543 3455666666666666653     3344


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCC----------------CCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEE
Q 038416          284 IGLLKETADICYERIKEIPCITCPVK----------------PQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIIL  347 (387)
Q Consensus       284 ~~~~~~~~~~~~~~l~~~~~~~~~~~----------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~  347 (387)
                      .++..++++.+.+.+++++.+..+..                ...|.++.+.++        . .+....++.+.|+.+.
T Consensus       259 ~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~--------~-~~~~~~~l~~~~i~~~  329 (389)
T 3acz_A          259 MQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMK--------S-FEAAKKLMEHLKVCTL  329 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEES--------S-HHHHHHHHTTCSSSEE
T ss_pred             HHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEEC--------C-HHHHHHHHHhCCCcEE
Confidence            45555666666666665432111101                112445566654        2 2344556677888877


Q ss_pred             c---C------Ccc----------------CC-CCeEEEEeeCChHhHHHHHHHHHHHHH
Q 038416          348 P---G------RTV----------------GM-KNWLRIAFAAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       348 ~---g------~~~----------------~~-~~~~Ri~~~~~~e~~~~~~~~l~~~~~  381 (387)
                      +   |      ..+                +. ++++|+|++..  +.+++++.|.++++
T Consensus       330 ~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~--~~~~li~~l~~al~  387 (389)
T 3acz_A          330 AVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIE--NVDDIIADLKQALE  387 (389)
T ss_dssp             BSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSS--CHHHHHHHHHHHHT
T ss_pred             CcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccC--CHHHHHHHHHHHHh
Confidence            6   4      211                11 47899999874  67777777777764

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.96  E-value=1e-27  Score=227.24  Aligned_cols=332  Identities=15%  Similarity=0.096  Sum_probs=211.8

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      .+++.+.|.+..+.++ .++.+.+++.+++....  .|+   ...++++.+++++.+.++   +.++|++++|+++|+..
T Consensus        58 ~~iD~~~~~~~~~lg~-~~~~v~~a~~~~~~~~~--~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~gg~eA~~~  128 (453)
T 2cy8_A           58 VYLDFFGGHGALVLGH-GHPRVNAAIAEALSHGV--QYA---ASHPLEVRWAERIVAAFP---SIRKLRFTGSGTETTLL  128 (453)
T ss_dssp             EEEESCTTTTSCTTCB-TCHHHHHHHHHHHTTTC--SSC---SSCHHHHHHHHHHHHHCT---TCSEEEEESCHHHHHHH
T ss_pred             EEEECcccHhhcccCC-CCHHHHHHHHHHHHhCC--CCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCCHHHHHHH
Confidence            3556666544333344 78999999999987632  222   346889999999988664   56899999999999999


Q ss_pred             HHHh---hcCCCCeEEEcCCCCcchHHHhhccC-----------CCce------eeeeccCCCCCccCChhhHHHhhcc-
Q 038416           89 SLSV---LARPGANILIPRPGYPLYEIHAAGSN-----------NNLE------ARHYDLLPEKRWEVDLDGVEALADE-  147 (387)
Q Consensus        89 ~~~~---l~~~g~~vl~~~p~~~~~~~~~~~~~-----------~g~~------~~~~~~~~~~~~~~~~~~l~~~~~~-  147 (387)
                      ++++   +.++ +.|++.+|+|+++...+.  .           .|..      +..++.       .|+++|+++++. 
T Consensus       129 al~~ar~~~~~-~~vi~~~~~yhg~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~~  198 (453)
T 2cy8_A          129 ALRVARAFTGR-RMILRFEGHYHGWHDFSA--SGYNSHFDGQPAPGVLPETTANTLLIRP-------DDIEGMREVFANH  198 (453)
T ss_dssp             HHHHHHHHHCC-CEEEEECC------------------------------CGGGEEEECT-------TCHHHHHHHHHHH
T ss_pred             HHHHHHHhhCC-CEEEEEcCCcCCCchhhH--hhcCCccCCCcCCCCCccccCceeecCC-------CCHHHHHHHHHhc
Confidence            9998   5554 688888999987654332  1           1221      122221       378999998863 


Q ss_pred             -CceEEEEeCC-CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccc
Q 038416          148 -NTVAIVIINP-GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIV  224 (387)
Q Consensus       148 -~~~~v~l~~p-~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~  224 (387)
                       ....+++++| +|+||.+ .+.+++++|.++|++||+++|+||+|+++ ..+.. ..+..+....+   +.|+||.++.
T Consensus       199 ~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~-~~~~~~~~~~d---i~s~sK~l~~  273 (453)
T 2cy8_A          199 GSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNH-GMQALLDVQPD---LTCLAKASAG  273 (453)
T ss_dssp             GGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCTT-HHHHHHTCCCS---EEEEEGGGGT
T ss_pred             CCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCch-hhhHHhCCCCc---EEEEChhhhC
Confidence             2334455666 5679976 47999999999999999999999999987 43421 11111221112   3489999874


Q ss_pred             cccceEEEEeeCCCCcccchhHHHHHHh---h---hhccCCcchHHHHHHHHHhhh-ccHHHHHHHHHHHHHHHHHHHHH
Q 038416          225 PGWRLGWLVTSDPNGILQNSGFVDSIKG---C---LNAASHPVTFIQAAVPRIVDE-TNEAFFAKIIGLLKETADICYER  297 (387)
Q Consensus       225 ~g~r~G~i~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~  297 (387)
                       |+|+||+++++        ++++.+..   .   ...+++++++++.++.++++. . .   ++..++++++++++++.
T Consensus       274 -G~~~G~v~~~~--------~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~---~~~~~~~~~~~~~l~~~  340 (453)
T 2cy8_A          274 -GLPGGILGGRE--------DVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL-E---DDVCAKINDLGQFAREA  340 (453)
T ss_dssp             -TSSCEEEEECH--------HHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH-H---TTHHHHHHHHHHHHHHH
T ss_pred             -CcceEEEechH--------HHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh-h---hhHHHHHHHHHHHHHHH
Confidence             89999999975        56665544   1   123456788888888777764 3 1   33445666666666666


Q ss_pred             hhcCC---CCCCCCCCCceEEEEEecCc-----c----ccc-----CCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEE
Q 038416          298 IKEIP---CITCPVKPQGAMFVMVKLNV-----S----MLE-----DIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRI  360 (387)
Q Consensus       298 l~~~~---~~~~~~~~~~g~~~~~~~~~-----~----~~~-----~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri  360 (387)
                      |+++.   ++... .+..|.++|+.++.     .    ...     ......++...++ ++||.+.|+      +.+|+
T Consensus       341 L~~~~~~~~~~~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~Gv~v~~~------~~~~l  412 (453)
T 2cy8_A          341 MNHLFARKGLNWL-AYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALI-LEGVDIGGR------GSVFL  412 (453)
T ss_dssp             HHHHHHHTTCCEE-EECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHH-HTTEECBTT------TEEEC
T ss_pred             HHHHHhhCCCcEE-EEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHH-HCCeEEeCC------CCEEe
Confidence            65431   22211 24456688888763     1    000     0001345666665 569999653      24777


Q ss_pred             EeeCChHhHHHHHHHHHHHHHHhhh
Q 038416          361 AFAAEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       361 ~~~~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      ++..+++++++++++|+++++++..
T Consensus       413 ~~~~t~~~i~~~l~~l~~~l~~~~~  437 (453)
T 2cy8_A          413 SAQHEREHVEHLVTTFDRVLDRLAD  437 (453)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eccCCHHHHHHHHHHHHHHHHHHHh
Confidence            7678999999999999999987643

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.96  E-value=4.4e-28  Score=230.56  Aligned_cols=296  Identities=12%  Similarity=0.090  Sum_probs=211.1

Q ss_pred             CcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCC---eEEEcCCCCcch----HHHhhccCCCcee
Q 038416           51 GVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGA---NILIPRPGYPLY----EIHAAGSNNNLEA  123 (387)
Q Consensus        51 ~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~---~vl~~~p~~~~~----~~~~~~~~~g~~~  123 (387)
                      ...++++.+++++      +.++++|++|+|+++++..++.++.++|+   +|+++.|+|++.    ...++  ..|.++
T Consensus       112 ~~~~l~~~la~~~------g~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~--~~G~~~  183 (465)
T 3e9k_A          112 GDESIVGLMKDIV------GANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQ--LHGLNI  183 (465)
T ss_dssp             TTHHHHGGGHHHH------TCCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHH--HTTCCH
T ss_pred             hHHHHHHHHHHHc------CCCcCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHH--HcCCcc
Confidence            3467888888887      45678999999999999999999987665   499999999874    33566  678876


Q ss_pred             ee--eccC-CCCCccCChhhHHHhhc---cCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCC
Q 038416          124 RH--YDLL-PEKRWEVDLDGVEALAD---ENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS  197 (387)
Q Consensus       124 ~~--~~~~-~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~  197 (387)
                      ..  +.+. ..+++.+|+++++++++   +++++|++++|+||||.+++   +++|.++|+++|+++|+|++|+.    +
T Consensus       184 ~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~la~~~g~~vi~D~a~~~----g  256 (465)
T 3e9k_A          184 EESMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFN---IPAITKAGQAKGCYVGFDLAHAV----G  256 (465)
T ss_dssp             HHHEEEECCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTT----T
T ss_pred             eeeeEEEecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeec---HHHHHHHHHHcCCEEEEEhhhhc----C
Confidence            42  1221 23456789999999996   67899999999999999988   78888999999999999999985    2


Q ss_pred             CCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhh------------------------
Q 038416          198 TPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGC------------------------  253 (387)
Q Consensus       198 ~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~------------------------  253 (387)
                      .....+.....   .++++|++|.+..+..++|++++++        ++.+.+...                        
T Consensus       257 ~~~~~~~~~~~---D~~~~s~~K~l~~gp~~~g~l~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  325 (465)
T 3e9k_A          257 NVELYLHDWGV---DFACWCSYKYLNAGAGGIAGAFIHE--------KHAHTIKPALVGWFGHELSTRFKMDNKLQLIPG  325 (465)
T ss_dssp             TSCCCHHHHTC---CEEEECSSSTTCCCTTCCCEEEECG--------GGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSS
T ss_pred             CcCCchhhcCC---CEEEECcccccccCCCceEEEEEcH--------HHHhhcCCcccCccCCCCCcccccCCCcCcCCC
Confidence            22222323333   3888999999732223578988865        222211100                        


Q ss_pred             --hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcC----------CCCCCCCCCC----ceEEEE
Q 038416          254 --LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEI----------PCITCPVKPQ----GAMFVM  317 (387)
Q Consensus       254 --~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~~----~g~~~~  317 (387)
                        ....++++.....++.++++...+..+++..++..++++++.+.|+++          +++.++ .|.    .|.+++
T Consensus       326 ~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~-~p~~~~~~g~~~~  404 (465)
T 3e9k_A          326 VCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNII-TPSHVEERGCQLT  404 (465)
T ss_dssp             GGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEEC-SCSSGGGBCSCEE
T ss_pred             hHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEe-CCCCHhhcccEEE
Confidence              001125666777777777765444457888889999999999999874          677744 443    266777


Q ss_pred             EecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe-e--CChHhHHHHHHHHHHHHHHhhh
Q 038416          318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF-A--AEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~-~--~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      +.++.       +..++...+ .++||.+..    ..++++|+++ .  ++.++++++++.|++++++...
T Consensus       405 ~~~~~-------~~~~l~~~L-~~~Gi~v~~----~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~~~~  463 (465)
T 3e9k_A          405 ITFSV-------PNKDVFQEL-EKRGVVCDK----RNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDSAET  463 (465)
T ss_dssp             EEECC-------TTCCHHHHH-HTTTEECEE----ETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC---
T ss_pred             EEecC-------CHHHHHHHH-HHCCEEEec----CCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHhccc
Confidence            77752       234566666 456998863    2368999997 3  4899999999999999876544

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.96  E-value=1.6e-27  Score=226.86  Aligned_cols=322  Identities=15%  Similarity=0.106  Sum_probs=228.7

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCC---CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh----cCCCC
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSP---TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL----ARPGA   98 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~---~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l----~~~g~   98 (387)
                      ..|.+.+++.+.+..  +..|.+   .+|..++++.+++++.+.+|...   .+++++|+++++..++.++    .++||
T Consensus        78 ~~p~v~~~~~~~~~~--~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~---~~~~~~ggt~a~~~al~~~~~~~~~~Gd  152 (474)
T 1wyu_B           78 YNPKLHEEAARLFAD--LHPYQDPRTAQGALRLMWELGEYLKALTGMDA---ITLEPAAGAHGELTGILIIRAYHEDRGE  152 (474)
T ss_dssp             CCCHHHHHHHHTTSS--CCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE---EECCCSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHh--cCCCCchhhChHHHHHHHHHHHHHHHHHCCCc---eeecChHHHHHHHHHHHHHHHHHHhcCC
Confidence            335566666665322  223332   44566788888888877665432   4668899999998866554    35777


Q ss_pred             -----eEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHH
Q 038416           99 -----NILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKI  173 (387)
Q Consensus        99 -----~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l  173 (387)
                           +|+++.|+|+.+...+.  ..|++++.++++  .++.+|+++|++++++++++|++++| ||+|.+.  +++++|
T Consensus       153 ~~~r~~Vlv~~~~h~~~~~~~~--~~G~~vv~v~~~--~~~~~d~~~L~~~i~~~t~~v~~~~p-n~~G~~~--~~l~~i  225 (474)
T 1wyu_B          153 GRTRRVVLVPDSAHGSNPATAS--MAGYQVREIPSG--PEGEVDLEALKRELGPHVAALMLTNP-NTLGLFE--RRILEI  225 (474)
T ss_dssp             TTTCCEEEEETTSCTHHHHHHH--HTTCEEEEECBC--TTSSBCHHHHHHHCSTTEEEEEECSS-CTTSCCC--TTHHHH
T ss_pred             ccCCCEEEEeCCcChhhHHHHH--HCCCEEEEecCC--CCCCcCHHHHHHhhCCCceEEEEECC-CCCcccC--CCHHHH
Confidence                 99999999999999988  899999999875  34678999999999889999999998 5899873  358999


Q ss_pred             HHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCccccccc----ccceEEEEeeCCCCcccchhHHHH
Q 038416          174 ARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVP----GWRLGWLVTSDPNGILQNSGFVDS  249 (387)
Q Consensus       174 ~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~----g~r~G~i~~~~~~~~~~~~~~~~~  249 (387)
                      +++|+++|+++|+|++|..+.++   ......+.   ..+++.|++|+|+.+    |+|+||+++++        ++++.
T Consensus       226 ~~l~~~~g~~li~Dea~~~~~~g---~~~~~~~g---~di~~~s~~K~~~~p~g~gG~~~G~~~~~~--------~l~~~  291 (474)
T 1wyu_B          226 SRLCKEAGVQLYYDGANLNAIMG---WARPGDMG---FDVVHLNLHKTFTVPHGGGGPGSGPVGVKA--------HLAPY  291 (474)
T ss_dssp             HHHHHHHTCEEEEEGGGGGGTTT---TCCHHHHT---CSEEECCTTTTTCCCCTTSCCCCCCEEECG--------GGGGG
T ss_pred             HHHHHHcCCEEEEeCchhhhhcc---CCCcccCC---CcEEEEeCccccccCCCCCCCCeEEEEEcH--------HHHHh
Confidence            99999999999999999865532   11222222   348888999998765    36999999976        34443


Q ss_pred             HHh-h-------------------hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 038416          250 IKG-C-------------------LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVK  309 (387)
Q Consensus       250 ~~~-~-------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  309 (387)
                      +.. .                   ....++.+...+.++..++.....+++.+..+++.++++++.+.|+++ ++.+. .
T Consensus       292 l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~-g~~~~-~  369 (474)
T 1wyu_B          292 LPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK-GYRVP-Y  369 (474)
T ss_dssp             CCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCS-S
T ss_pred             CCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcEec-C
Confidence            321 0                   001223556667777777765456778888999999999999999987 77743 2


Q ss_pred             CCceE-EEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccC--CCCeEEEEeeC--ChHhHHHHHHHHHHHHHH
Q 038416          310 PQGAM-FVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG--MKNWLRIAFAA--EPATLEDGLERIKAFCQR  382 (387)
Q Consensus       310 ~~~g~-~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~--~~~~~Ri~~~~--~~e~~~~~~~~l~~~~~~  382 (387)
                      +...+ .+++.++.    + .+..++...+++ +||.+ ++..|.  ..+++||+++.  +++++++++++|++++++
T Consensus       370 ~~~~~~~~~~~~~~----~-~~~~~l~~~L~~-~Gi~~-~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~  440 (474)
T 1wyu_B          370 DGPSMHEFVAQPPE----G-FRALDLAKGLLE-LGFHP-PTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKK  440 (474)
T ss_dssp             CSSCCSCEEEBCST----T-CCHHHHHHHHHH-TTCCC-CEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred             CCCcceEEEEEcCC----C-CCHHHHHHHHHH-CCccc-cccccccccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence            22111 14555521    1 245677777754 59985 555453  36799999975  899999999999988753

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.96  E-value=4.1e-28  Score=228.27  Aligned_cols=323  Identities=12%  Similarity=0.054  Sum_probs=206.0

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc--CCCCeEEEc
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA--RPGANILIP  103 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~g~~vl~~  103 (387)
                      .+|.+.+++++++.......|     ..+++.++++++.+.++   ++++|++++|+++|+..+++...  ..+++|++.
T Consensus        69 ~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~la~~l~~~~~---~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~  140 (427)
T 3fq8_A           69 AHPEVIEALKVAMEKGTSFGA-----PCALENVLAEMVNDAVP---SIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKF  140 (427)
T ss_dssp             TCHHHHHHHHHHHTTCSCCSS-----CCHHHHHHHHHHHHHST---TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             CCHHHHHHHHHHHHhCCCcCC-----CCHHHHHHHHHHHHhCC---CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEE
Confidence            689999999999876432222     23556666666666544   57899999999999999995532  234789999


Q ss_pred             CCCCcchHHHhhccCC-CceeeeeccCCCCCcc------------CChhhHHHhhcc---CceEEEEeCCCCCccccCC-
Q 038416          104 RPGYPLYEIHAAGSNN-NLEARHYDLLPEKRWE------------VDLDGVEALADE---NTVAIVIINPGNPCGNVFS-  166 (387)
Q Consensus       104 ~p~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~------------~~~~~l~~~~~~---~~~~v~l~~p~nptG~~~~-  166 (387)
                      .|+|+++...+.  .. +.....+.+....+..            -|+++|++++++   ++++|+++.++|++|...+ 
T Consensus       141 ~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~  218 (427)
T 3fq8_A          141 EGCYHGHADMFL--VKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPD  218 (427)
T ss_dssp             ETCCCCSCGGGC--SSCCTHHHHHTCCSCSSSCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCC
T ss_pred             CCCcCCCCHHHH--HhcCCcccccCCCCCCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCC
Confidence            999987654443  22 2222211111111110            078999998865   4555555555677887655 


Q ss_pred             HHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          167 YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       167 ~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      .+++++|.++|++||+++|+||+|+++ ..+... ....+...   ..+.|+||+++ +|+|+||+++++        ++
T Consensus       219 ~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~-~~~~~~~~---~di~t~sK~~~-~G~~~G~~~~~~--------~~  284 (427)
T 3fq8_A          219 AGFLEGLREITLEHDALLVFDEVITGF-RIAYGG-VQEKFGVT---PDLTTLGKIIG-GGLPVGAYGGKR--------EI  284 (427)
T ss_dssp             TTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTH-HHHHTTCC---CSEEEECGGGG-TTSSCEEEEECH--------HH
T ss_pred             HHHHHHHHHHHHHcCCEEEEecccccc-ccCcch-hhHhcCCC---CChhhhhhhhh-CCcceEEEEEcH--------HH
Confidence            556999999999999999999999987 444321 11111111   12458899987 799999999865        67


Q ss_pred             HHHHHhh----hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhh----cCCCCCCCCCCCceEEEEE
Q 038416          247 VDSIKGC----LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIK----EIPCITCPVKPQGAMFVMV  318 (387)
Q Consensus       247 ~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~g~~~~~  318 (387)
                      ++.+...    ...++++++++++++.++++...+   ++..++++++++.+++.|+    .++ +. ...+..|.++++
T Consensus       285 ~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~-~~-~~~~~~g~~~~~  359 (427)
T 3fq8_A          285 MQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ---PGTYEYLDQITKRLSDGLLAIAQETG-HA-ACGGQVSGMFGF  359 (427)
T ss_dssp             HTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHTT-CC-CEEEEETTEEEE
T ss_pred             HHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCC-CC-eEEEEeeeEEEE
Confidence            7766542    123456688888888888764322   1233344444444444443    332 22 113345778888


Q ss_pred             ecCccccc--------CCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHH
Q 038416          319 KLNVSMLE--------DIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       319 ~~~~~~~~--------~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~  382 (387)
                      .+......        ......++...+ .++||.+.|+..    ..+|+++..+++++++++++|++++++
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~Gi~v~~~~~----~r~~~~~~~t~e~i~~~l~~l~~~l~~  426 (427)
T 3fq8_A          360 FFTEGPVHNYEDAKKSDLQKFSRFHRGM-LEQGIYLAPSQF----EAGFTSLAHTEEDIDATLAAARTVMSA  426 (427)
T ss_dssp             ESSSCCCCSHHHHTTSCHHHHHHHHHHH-HHTTEECCSSTT----SCEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEecCccccccccccccHHHHHHHHHHH-HHCCcEEecCCC----CCEEeeCcCCHHHHHHHHHHHHHHHHh
Confidence            77542110        000123555555 566999998752    356666677999999999999998875

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.96  E-value=1.2e-27  Score=227.11  Aligned_cols=330  Identities=15%  Similarity=0.108  Sum_probs=214.7

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC--------CC
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR--------PG   97 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--------~g   97 (387)
                      .+|.+.+|+++++..... +|....+..+.+..+++.+.+..+  .+.++|++++|+++|++.+++.+.+        ++
T Consensus        72 ~~p~v~~A~~~~~~~~~~-~~~~~~~~~~~~~~lae~l~~~~~--~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~  148 (472)
T 3hmu_A           72 GRDELAEVAARQMRELPY-YNTFFKTTHVPAIALAQKLAELAP--GDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEK  148 (472)
T ss_dssp             CCHHHHHHHHHHHHHCSC-CCSSSSEECHHHHHHHHHHHHHSC--TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTC
T ss_pred             CCHHHHHHHHHHHHhccc-cccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            589999999999876321 233222334555666666655443  3567999999999999999999874        45


Q ss_pred             CeEEEcCCCCcchHHHhhccCCCc------------eeeeeccCC--C-CCccCC--------hhhHHHhhcc---CceE
Q 038416           98 ANILIPRPGYPLYEIHAAGSNNNL------------EARHYDLLP--E-KRWEVD--------LDGVEALADE---NTVA  151 (387)
Q Consensus        98 ~~vl~~~p~~~~~~~~~~~~~~g~------------~~~~~~~~~--~-~~~~~~--------~~~l~~~~~~---~~~~  151 (387)
                      ++|++.+|+|+++...+.  ..+.            .+..++.+.  . +++ .+        +++|+++++.   ...+
T Consensus       149 ~~ii~~~~~yHg~t~~~~--~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~~~~a  225 (472)
T 3hmu_A          149 TVIISRKNAYHGSTVASS--ALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELEEAILELGENRVA  225 (472)
T ss_dssp             CEEEEETTCCCCSSHHHH--HHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEE
T ss_pred             CEEEEEcCcCCCccHHhh--hccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence            899999999998765444  2222            223333211  0 111 23        6778887752   3344


Q ss_pred             EEEeCC-CCCccccC-CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccce
Q 038416          152 IVIINP-GNPCGNVF-SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRL  229 (387)
Q Consensus       152 v~l~~p-~nptG~~~-~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~  229 (387)
                      +++++| ++++|... +++.+++|.++|++||+++|+||+|.+|...|.... ...+....+   +.++||+++.+|+|+
T Consensus       226 avi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a-~~~~~v~pd---i~t~sK~l~gg~~pl  301 (472)
T 3hmu_A          226 AFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFG-TQTMGIRPH---IMTIAKGLSSGYAPI  301 (472)
T ss_dssp             EEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCH-HHHHTCCCS---EEEECGGGTTTSSCC
T ss_pred             EEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccch-hHHhCCCCc---eeeechhhhcCCcce
Confidence            455555 67778754 888899999999999999999999999876664221 122222122   236889977666999


Q ss_pred             EEEEeeCCCCcccchhHHHHHHhh--h-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHH-HHHHHHHHHhhc---CC
Q 038416          230 GWLVTSDPNGILQNSGFVDSIKGC--L-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLK-ETADICYERIKE---IP  302 (387)
Q Consensus       230 G~i~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~l~~---~~  302 (387)
                      |++++++        ++++.+...  . ..+++.++++++++.++|+...+   +...++++ ++.+++++.|++   +|
T Consensus       302 G~v~~~~--------~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~---~~~~~~~~~~~~~~l~~~L~~l~~~~  370 (472)
T 3hmu_A          302 GGSIVCD--------EVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEE---ENILDHVRNVAAPYLKEKWEALTDHP  370 (472)
T ss_dssp             EEEEEEH--------HHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHTHHHHHHHHHHGGGGST
T ss_pred             EEEEECH--------HHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999976        788887321  1 24567889999998888875322   23344445 555555555544   34


Q ss_pred             CCCCCCCCCceEEEEEecCccccc--CC-----CcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHH
Q 038416          303 CITCPVKPQGAMFVMVKLNVSMLE--DI-----GDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGL  373 (387)
Q Consensus       303 ~~~~~~~~~~g~~~~~~~~~~~~~--~~-----~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~  373 (387)
                      .+..+  +..|.++++.+......  .+     ....++...+ .++||.+.|+.     +++||++  ..+++++++++
T Consensus       371 ~v~~v--r~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~g-----~~iRi~p~~~~t~e~i~~~l  442 (472)
T 3hmu_A          371 LVGEA--KIVGMMASIALTPNKASRAKFASEPGTIGYICRERC-FANNLIMRHVG-----DRMIISPPLVITPAEIDEMF  442 (472)
T ss_dssp             TEEEE--EEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHH-HHTTBCCEEET-----TEEEECCCTTCCHHHHHHHH
T ss_pred             CeEEE--EecCceEEEEEecCccccccccchhHHHHHHHHHHH-HHCCcEEEecC-----CEEEEECCCCCCHHHHHHHH
Confidence            33322  33455666666431100  00     0133455555 45699999863     8999996  56899999999


Q ss_pred             HHHHHHHHHhh
Q 038416          374 ERIKAFCQRHA  384 (387)
Q Consensus       374 ~~l~~~~~~~~  384 (387)
                      ++|++++++..
T Consensus       443 ~~l~~~l~~~~  453 (472)
T 3hmu_A          443 VRIRKSLDEAQ  453 (472)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999987764

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.96  E-value=2.4e-27  Score=220.45  Aligned_cols=323  Identities=14%  Similarity=0.109  Sum_probs=220.0

Q ss_pred             ccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416           10 RHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYS-PTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~-~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      +++..+|.|      ..++.+.+++.+.+...   .|+ ...+..++|+.++++++        .+++++++|+++|+..
T Consensus        24 ~~~l~~~~p------~~~~~~~~a~~~~~~~~---~~~~~~~~~~~l~~~la~~~~--------~~~~i~~~~gt~al~~   86 (391)
T 3dr4_A           24 LPRISVAAP------RLDGNERDYVLECMDTT---WISSVGRFIVEFEKAFADYCG--------VKHAIACNNGTTALHL   86 (391)
T ss_dssp             ----CCCCC------CCCSSHHHHHHHHHHHT---CCSSCSHHHHHHHHHHHHHHT--------CSEEEEESSHHHHHHH
T ss_pred             CceeccCCC------CCCHHHHHHHHHHHHcC---CccCCChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHH
Confidence            344555555      44578889998888754   344 45678999999999993        2388899999999999


Q ss_pred             HHHhh-cCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           89 SLSVL-ARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        89 ~~~~l-~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      ++.++ +++||+|+++.|+|+++...+.  ..|.+++.+++++ +++.+|++++++++++++++|+   ++||||...+ 
T Consensus        87 ~l~~~~~~~gd~vl~~~~~~~~~~~~~~--~~g~~~~~~~~~~-~~~~~d~~~l~~~~~~~~~~v~---~~n~tG~~~~-  159 (391)
T 3dr4_A           87 ALVAMGIGPGDEVIVPSLTYIASANSVT--YCGATPVLVDNDP-RTFNLDAAKLEALITPRTKAIM---PVHLYGQICD-  159 (391)
T ss_dssp             HHHHHTCCTTCEEEEESSSCTHHHHHHH--HTTCEEEEECBCT-TTCSBCGGGSGGGCCTTEEEEC---CBCGGGCCCC-
T ss_pred             HHHHcCCCCcCEEEECCCchHHHHHHHH--HCCCEEEEEecCc-cccCcCHHHHHHhcCCCceEEE---EECCCCChhh-
Confidence            99999 8999999999999999999999  9999999999864 3568899999999988888777   5679999866 


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccc-cCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLA-FGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                        +++|.++|+++|+++|+|++|+... +.+.   ....+. +   +.+.||+|..+++|.+.|++++++       +++
T Consensus       160 --~~~i~~l~~~~~~~li~D~a~~~g~~~~~~---~~~~~~-d---i~~~S~s~~K~l~~g~gg~~~~~~-------~~~  223 (391)
T 3dr4_A          160 --MDPILEVARRHNLLVIEDAAEAVGATYRGK---KSGSLG-D---CATFSFFGNAIITTGEGGMITTND-------DDL  223 (391)
T ss_dssp             --HHHHHHHHHHTTCEEEEECTTCTTCEETTE---ETTSSS-S---EEEEECBTTSSSCCBSCEEEEESC-------HHH
T ss_pred             --HHHHHHHHHHcCCEEEEECcccccceECCe---eecccC-C---EEEEECCCCCcCCcCCeEEEEECC-------HHH
Confidence              8889999999999999999998532 2221   111111 1   667776633334556789988865       246


Q ss_pred             HHHHHhhhhccCC-------------cchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC--CC
Q 038416          247 VDSIKGCLNAASH-------------PVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVK--PQ  311 (387)
Q Consensus       247 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~  311 (387)
                      .+.+.........             .......++.....   ...+++..++.+++++.+.+.|+++ ++.....  +.
T Consensus       224 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~  299 (391)
T 3dr4_A          224 AAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQ---LERVDEHLAARERVVGWYEQKLARL-GNRVTKPHVAL  299 (391)
T ss_dssp             HHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHH---HHTHHHHHHHHHHHHHHHHHHHGGG-TTSEECCCCCT
T ss_pred             HHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcC-CccccCcCCCC
Confidence            6666544321111             11112222222211   2345667777888888888999887 6664422  11


Q ss_pred             ---ce-EEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCcc---C-----------------CCCeEEEEee--CC
Q 038416          312 ---GA-MFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTV---G-----------------MKNWLRIAFA--AE  365 (387)
Q Consensus       312 ---~g-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~---~-----------------~~~~~Ri~~~--~~  365 (387)
                         .+ ..+++.++..  .+ .+..++...+ .++||.+.+|...   .                 ....+|++++  .+
T Consensus       300 ~~~~~~~~~~i~~~~~--~~-~~~~~l~~~L-~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t  375 (391)
T 3dr4_A          300 TGRHVFWMYTVRLGEG--LS-TTRDQVIKDL-DALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLT  375 (391)
T ss_dssp             TSCCCCSSEEEEECSS--CS-SCHHHHHHHH-HHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCC
T ss_pred             CCcceeEEEEEEECCc--cc-hhHHHHHHHH-HHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCC
Confidence               12 2235555421  01 1355666666 5669999987511   0                 0246899984  58


Q ss_pred             hHhHHHHHHHHHHHH
Q 038416          366 PATLEDGLERIKAFC  380 (387)
Q Consensus       366 ~e~~~~~~~~l~~~~  380 (387)
                      ++|++.+++.|++++
T Consensus       376 ~edi~~~~~~l~~~l  390 (391)
T 3dr4_A          376 EADIDRVIAALDQVL  390 (391)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999987653

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.96  E-value=9.8e-27  Score=222.56  Aligned_cols=341  Identities=13%  Similarity=0.054  Sum_probs=237.4

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEE---EcCChHHHHHHHHHhhcCC----
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVY---LTLGCSQAIEISLSVLARP----   96 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~---~~~g~~~a~~~~~~~l~~~----   96 (387)
                      .++++.+.+++.+++... ..+|....+..++++.+.+++.+.+|.+..+++++   +|+|+++++..++.++..+    
T Consensus        66 ~~~~~~v~~~l~~~~~~~-~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~  144 (502)
T 3hbx_A           66 TWMEPECDKLIMSSINKN-YVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNK  144 (502)
T ss_dssp             CCCCHHHHHHHHHTTTCB-TTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhccC-CCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHH
Confidence            457889999999887653 22444444567888888888888887654455544   4899999999998887654    


Q ss_pred             ----CC-----eEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           97 ----GA-----NILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        97 ----g~-----~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                          |+     +|+++.++|..+...++  ..|++++.+++++ +++.+|++++++++++++++|++++|+||||.+.+ 
T Consensus       145 ~~~~G~~~~~~~vi~~~~~h~s~~~~~~--~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~-  220 (502)
T 3hbx_A          145 RKAEGKPVDKPNIVTGANVQVCWEKFAR--YFEVELKEVKLSE-GYYVMDPQQAVDMVDENTICVAAILGSTLNGEFED-  220 (502)
T ss_dssp             HHHTTCCCSCCEEEEETTCCHHHHHHHH--HTTCEEEEECCBT-TBCSCCHHHHHHHCCTTEEEEEEEBSCTTTCCBCC-
T ss_pred             HHhcCCCCCCcEEEEcCCchHHHHHHHH--HcCceeEEEecCC-CcCcCCHHHHHHHHhhCCEEEEEecCCCCCCcccC-
Confidence                76     89999999999999999  9999999999854 34789999999999999999999999999999977 


Q ss_pred             HHHHHHHHHHHhc------CcEEeeccccccccc---CCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCC
Q 038416          168 QHLQKIARTARNL------GIIVIADEVYNHLAF---GSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPN  238 (387)
Q Consensus       168 ~~~~~l~~~~~~~------~~~li~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~  238 (387)
                        +++|.++|+++      |+++++|++|+++..   .+.....+.   ...-.++..|.+|+ +.++.++|+++++++.
T Consensus       221 --l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~---~~~~D~v~~s~hK~-l~~p~g~G~~~~~~~~  294 (502)
T 3hbx_A          221 --VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFR---LPLVKSINVSGHKY-GLVYAGIGWVIWRNKE  294 (502)
T ss_dssp             --HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTT---STTEEEEEEETTTT-TCCCSSCEEEEESSGG
T ss_pred             --HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccC---CCCceEEEECcccc-cCCCCCeEEEEEeCHH
Confidence              77888888888      999999999996541   121111111   11224667789998 5666789999887532


Q ss_pred             CcccchhHHHHHH---hhh-----h--ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 038416          239 GILQNSGFVDSIK---GCL-----N--AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPV  308 (387)
Q Consensus       239 ~~~~~~~~~~~~~---~~~-----~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  308 (387)
                      .+.      +.+.   .+.     .  ..++.+.....++..++.....+.+.++.++..++++++.+.|++++++.++.
T Consensus       295 ~l~------~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~  368 (502)
T 3hbx_A          295 DLP------EELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVS  368 (502)
T ss_dssp             GSC------GGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECS
T ss_pred             Hhh------HHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence            111      1111   010     0  01112222223333333333345678888899999999999999998788553


Q ss_pred             CCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCcc---CCCCeEEEEee--CChHhHHHHHHHHHHHHHHh
Q 038416          309 KPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTV---GMKNWLRIAFA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       309 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~---~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                      .....++++++++...  + .+..++...| .++||.+......   ....++||+++  .+.++++.+++.|+++++++
T Consensus       369 ~~~~~~~v~f~~~~~~--~-~~~~~l~~~L-~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l~~l  444 (502)
T 3hbx_A          369 KDEGVPLVAFSLKDSS--C-HTEFEISDML-RRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMREL  444 (502)
T ss_dssp             CSSSSSEEEEEESSCS--S-CCHHHHHHHH-HTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCceEEEEEecCCC--c-CCHHHHHHHH-HhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Confidence            3134556666765311  0 1344666665 6679986432221   12358999995  57899999999999999887


Q ss_pred             hh
Q 038416          384 AK  385 (387)
Q Consensus       384 ~~  385 (387)
                      ++
T Consensus       445 ~~  446 (502)
T 3hbx_A          445 DE  446 (502)
T ss_dssp             HT
T ss_pred             Hh
Confidence            64

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.96  E-value=2e-27  Score=223.33  Aligned_cols=331  Identities=13%  Similarity=0.060  Sum_probs=215.1

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      .+++.+.|....+.++ .+|.+.+++.+++.......|     ..++++.+++++.+.++   +.++|++++|+++|+..
T Consensus        53 ~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~ea~~~  123 (424)
T 2e7u_A           53 RYLDYVMSWGPLILGH-AHPKVLARVRETLERGLTFGA-----PSPLEVALAKKVKRAYP---FVDLVRFVNSGTEATMS  123 (424)
T ss_dssp             EEEESSGGGTTCTTCB-TCHHHHHHHHHHHHTCSCCSS-----CCHHHHHHHHHHHHHCT---TCCEEEEESSHHHHHHH
T ss_pred             EEEEccccccccccCC-CCHHHHHHHHHHHHhCCCCCC-----CCHHHHHHHHHHHHhCC---CCCEEEEeCCHHHHHHH
Confidence            3455555443333344 789999999999976422222     23555666666655543   56899999999999999


Q ss_pred             HHHh---hcCCCCeEEEcCCCCcchHHHhhcc------------CCCc------eeeeeccCCCCCccCChhhHHHhhcc
Q 038416           89 SLSV---LARPGANILIPRPGYPLYEIHAAGS------------NNNL------EARHYDLLPEKRWEVDLDGVEALADE  147 (387)
Q Consensus        89 ~~~~---l~~~g~~vl~~~p~~~~~~~~~~~~------------~~g~------~~~~~~~~~~~~~~~~~~~l~~~~~~  147 (387)
                      +++.   +.+ ++.|++.+|+|+++...+...            ..|.      .+..++.       .|+++|+++++.
T Consensus       124 al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~  195 (424)
T 2e7u_A          124 ALRLARGYTG-RPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-------NDPEGLREVLKR  195 (424)
T ss_dssp             HHHHHHHHHC-CCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-------TCHHHHHHHHHH
T ss_pred             HHHHHHHhhC-CCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-------CCHHHHHHHHHh
Confidence            9986   444 578999999999865433200            0121      1222221       378999988863


Q ss_pred             --CceEEEEeCCCC-CccccC-CHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCccccc
Q 038416          148 --NTVAIVIINPGN-PCGNVF-SYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWI  223 (387)
Q Consensus       148 --~~~~v~l~~p~n-ptG~~~-~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~  223 (387)
                        +..++++++|+| +||.++ +.+++++|.++ ++||+++|+||+|+++ ..+.. ..+..+....+   +.|+||+++
T Consensus       196 ~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~-~~~~~~~~~~d---i~s~sK~l~  269 (424)
T 2e7u_A          196 RGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFG-GATELLGLKPD---LVTLGKILG  269 (424)
T ss_dssp             HGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSSTT-HHHHHHTCCCS---EEEECGGGG
T ss_pred             CCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccchh-HHHHHhCCCcc---hhhhhhhhh
Confidence              344566778865 489765 78999999999 9999999999999987 33321 11111111112   338999987


Q ss_pred             ccccceEEEEeeCCCCcccchhHHHHHHhh----hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhh
Q 038416          224 VPGWRLGWLVTSDPNGILQNSGFVDSIKGC----LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIK  299 (387)
Q Consensus       224 ~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  299 (387)
                       +|+|+||+++++        ++++.+...    ...+++.+++++.++.++++...+  .++..++++++++++++.|+
T Consensus       270 -~G~~~G~~~~~~--------~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~l~~~L~  338 (424)
T 2e7u_A          270 -GGLPAAAYAGRR--------EIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEE--NPGYYAYLEDLGARLEAGLK  338 (424)
T ss_dssp             -TTSSCEEEEECH--------HHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHH
T ss_pred             -CCcceEEEEEcH--------HHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHH
Confidence             489999999976        676666542    123456788888888887765322  24456666777777777776


Q ss_pred             cC---CCCCCCCCCCceEEEEEecCcccccC--------CCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHh
Q 038416          300 EI---PCITCPVKPQGAMFVMVKLNVSMLED--------IGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPAT  368 (387)
Q Consensus       300 ~~---~~~~~~~~~~~g~~~~~~~~~~~~~~--------~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~  368 (387)
                      ++   .++... .+..|.++|+.++......        .....++...++ ++||.+.|+..    ..+|+++..++++
T Consensus       339 ~~~~~~~~~~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~----~~~~~~~~~t~~~  412 (424)
T 2e7u_A          339 EVLKEKGLPHT-VNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLL-DRGIYWPPSNF----EAAFLSVAHREED  412 (424)
T ss_dssp             HHHHHTTCCCE-EEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-TTTEECCSSSS----SCEECCTTCCHHH
T ss_pred             HHHHhCCCceE-EEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHH-HCCeEEeccCC----CceEeeccCCHHH
Confidence            53   123211 2445678888886311000        012345666664 67999998752    3577777789999


Q ss_pred             HHHHHHHHHHH
Q 038416          369 LEDGLERIKAF  379 (387)
Q Consensus       369 ~~~~~~~l~~~  379 (387)
                      +++++++|+++
T Consensus       413 i~~~l~~l~~~  423 (424)
T 2e7u_A          413 VEKTLEALRKA  423 (424)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999875

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.96  E-value=4e-27  Score=219.49  Aligned_cols=314  Identities=13%  Similarity=0.049  Sum_probs=207.8

Q ss_pred             CCCcHHHHHHHHHHhcCC-CCCCCCCC--CCcHHHHHHHHHHHhhcCCCCCCCCCEEE-cCChHHHHHHHHHhhcCCCCe
Q 038416           24 LSDSTVAEDAVVDALRTA-HYNCYSPT--LGVPSARRGIADYLNRDLPYKLSPEDVYL-TLGCSQAIEISLSVLARPGAN   99 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~-~~~~y~~~--~~~~~lr~~ia~~~~~~~~~~~~~~~i~~-~~g~~~a~~~~~~~l~~~g~~   99 (387)
                      .++|+.+++++.+..... ...++.+.  ....++|+.+++++    |.+ .+++|++ |+|+++++..++.+++++| .
T Consensus        49 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~-~~~~i~~~t~g~t~al~~~~~~l~~~g-v  122 (398)
T 2fyf_A           49 SKVRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELF----SLP-DGYEVILGNGGATAFWDAAAFGLIDKR-S  122 (398)
T ss_dssp             CCCCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHT----TCC-TTCEEEEEETCHHHHHHHHHHHTCSSC-E
T ss_pred             CCCCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHh----CCC-CCceEEEeCCchhHHHHHHHHHhcCCC-e
Confidence            368889998887732110 01122211  11344555555555    432 3468998 9999999999999998887 2


Q ss_pred             EEEcCCCCcc-hHHHhhccCC--CceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHH
Q 038416          100 ILIPRPGYPL-YEIHAAGSNN--NLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIART  176 (387)
Q Consensus       100 vl~~~p~~~~-~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~  176 (387)
                      +++..+.|.. ....+.  ..  |.++..++++  +++..+.     .+++++++|++++|+||||.+++.+++.++   
T Consensus       123 ~~v~~~~~~~~~~~~~~--~~~~g~~~~~v~~~--~g~~~~~-----~i~~~~~~v~~~~~~nptG~~~~~~~i~~~---  190 (398)
T 2fyf_A          123 LHLTYGEFSAKFASAVS--KNPFVGEPIIITSD--PGSAPEP-----QTDPSVDVIAWAHNETSTGVAVAVRRPEGS---  190 (398)
T ss_dssp             EEEECSHHHHHHHHHHH--HCTTSCCCEEEECC--TTCCCCC-----CCCTTCSEEEEESEETTTTEECCCCCCTTC---
T ss_pred             EEEeCCHHHHHHHHHHH--HhCCCCceEEEecC--CCCCCCc-----cccCCCCEEEEeCcCCCcceecchHHhhhh---
Confidence            2333333321 122334  44  7788888775  3333332     256689999999999999999996666554   


Q ss_pred             HHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhh---
Q 038416          177 ARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGC---  253 (387)
Q Consensus       177 ~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~---  253 (387)
                         +|+++|+|++|+.+..    ...+..     ..+++.|+||+++++| ++||+++++        ++++.++..   
T Consensus       191 ---~~~~vivD~a~~~~~~----~~~~~~-----~di~~~s~sK~~~~~g-g~g~l~~~~--------~~~~~l~~~~~~  249 (398)
T 2fyf_A          191 ---DDALVVIDATSGAGGL----PVDIAE-----TDAYYFAPQKNFASDG-GLWLAIMSP--------AALSRIEAIAAT  249 (398)
T ss_dssp             ---C-CEEEEECTTTTTTS----CCCGGG-----CSEEEECTTSTTCSCS-SEEEEEECH--------HHHHHHHHHHHT
T ss_pred             ---cCCeEEEEeccccCCc----ccCccc-----CcEEEEecCcccCCCC-ceEEEEECH--------HHHHHhhccccc
Confidence               7999999999986432    112211     2378899999998875 599999875        566655321   


Q ss_pred             -------------------hhccCCcchHHHHHHHHHhhhccHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCCCC-CC--
Q 038416          254 -------------------LNAASHPVTFIQAAVPRIVDETNEAF-FAKIIGLLKETADICYERIKEIPCITCPV-KP--  310 (387)
Q Consensus       254 -------------------~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~--  310 (387)
                                         .....+++...+.++..+++...+.. +++..++++++++.+.+.|++++++.+.. .|  
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~  329 (398)
T 2fyf_A          250 GRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGL  329 (398)
T ss_dssp             TCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGG
T ss_pred             CCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhh
Confidence                               01124556666777777776433332 78888999999999999999987777442 14  


Q ss_pred             CceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHH
Q 038416          311 QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       311 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~  382 (387)
                      ..+.++|++++..     .+..++...|.+ +||.+.+|......+++||+++  .+++++++++++|++++++
T Consensus       330 ~~~~~~~~~~~~~-----~~~~~l~~~L~~-~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~  397 (398)
T 2fyf_A          330 RSQVVGTIDFVDD-----VDAGTVAKILRA-NGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWVVER  397 (398)
T ss_dssp             BCSSEEEEEECTT-----SCHHHHHHHHHH-TTCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred             cCCcEEEEECCCC-----CCHHHHHHHHHH-CCcEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence            2344888887531     145677777754 4999988733222579999996  5899999999999988765

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.96  E-value=2e-26  Score=209.34  Aligned_cols=278  Identities=15%  Similarity=0.107  Sum_probs=191.9

Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhc--cCCCceeeeeccCCC
Q 038416           54 SARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAG--SNNNLEARHYDLLPE  131 (387)
Q Consensus        54 ~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~--~~~g~~~~~~~~~~~  131 (387)
                      ++|+.++++++      .+  +.++++++++++..++.++.++||+|+++.|+|+++...+..  ...|.++..++.   
T Consensus         2 ~l~~~la~~~g------~~--~~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---   70 (331)
T 1pff_A            2 ALEGKIAKLEH------AE--ACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM---   70 (331)
T ss_dssp             HHHHHHHHHHT------CS--EEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT---
T ss_pred             hHHHHHHHHhC------CC--eEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC---
Confidence            68999999983      33  455555558999999999999999999999999987666530  047888888765   


Q ss_pred             CCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHh-cCcEEeecccccccccCCCCCccccccCCCc
Q 038416          132 KRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARN-LGIIVIADEVYNHLAFGSTPYVPMGVFGSIV  210 (387)
Q Consensus       132 ~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~-~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~  210 (387)
                          .|++++++++++++++|++++|+||||..++   +++|.++|++ +|+++|+|++|+.+.+.    .++ .+   +
T Consensus        71 ----~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~----~~~-~~---~  135 (331)
T 1pff_A           71 ----AVPGNIEKHLKPNTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILT----NPL-DL---G  135 (331)
T ss_dssp             ----TSTTHHHHTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHC----CGG-GG---T
T ss_pred             ----CCHHHHHHhhcCCCeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccC----Chh-hc---C
Confidence                3788999999889999999999999999987   8899999999 99999999999965432    122 12   3


Q ss_pred             cEEEEecCcccccccccc-eEEEEeeCCCCcccchhHHHHHHhhhhc--cCCcchHHHHHHHHHhhhccHHHHHHHHHHH
Q 038416          211 PVITLGSISKRWIVPGWR-LGWLVTSDPNGILQNSGFVDSIKGCLNA--ASHPVTFIQAAVPRIVDETNEAFFAKIIGLL  287 (387)
Q Consensus       211 ~~~~i~s~sK~~~~~g~r-~G~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  287 (387)
                      ..+++.|+||+++.+|.| +||+++++       +++++.++.....  +.+.+++.++++...++.     +..+.+..
T Consensus       136 ~d~~~~s~~K~~~~~~~r~~G~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~  203 (331)
T 1pff_A          136 VDIVVHSATKYINGHTDVVAGLVCSRA-------DIIAKVKSQGIKDITGAIISPHDAWLITRGTLT-----LDMRVKRA  203 (331)
T ss_dssp             CSEEEEETTTTTSSSSSCCCEEEEECH-------HHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH-----HHHHHHHH
T ss_pred             CcEEEEECccccCCCCCceEEEEEeCc-------HHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcch-----HHHHHHHH
Confidence            458999999999999999 79998863       2567777665433  445667676665555542     23333444


Q ss_pred             HHHHHHHHHHhhcC--------------CCCCCCC--CCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCC-
Q 038416          288 KETADICYERIKEI--------------PCITCPV--KPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGR-  350 (387)
Q Consensus       288 ~~~~~~~~~~l~~~--------------~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~-  350 (387)
                      ..+.+.+.+.+++.              |++.+..  ....+.++.+.+.        +..+ +..++.+.||.+.+.+ 
T Consensus       204 ~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~~l~~~gI~~~~~s~  274 (331)
T 1pff_A          204 AENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD--------GLEK-AKKVLDNCHVVSLAVSL  274 (331)
T ss_dssp             HHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS--------SHHH-HHHHHHTCSSSEECSSC
T ss_pred             HHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC--------CHHH-HHHHHHhCCCceeccCC
Confidence            44444444444332              1221110  0113445666654        2333 4455678899776542 


Q ss_pred             --------c----------------cCC-CCeEEEEeeC--ChHhHHHHHHHHHH
Q 038416          351 --------T----------------VGM-KNWLRIAFAA--EPATLEDGLERIKA  378 (387)
Q Consensus       351 --------~----------------~~~-~~~~Ri~~~~--~~e~~~~~~~~l~~  378 (387)
                              .                ++. ++++|++++.  ++++++.+++.|++
T Consensus       275 g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~  329 (331)
T 1pff_A          275 GGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDL  329 (331)
T ss_dssp             CSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred             CCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Confidence                    1                112 4799999965  46777777777654

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.96  E-value=4.7e-27  Score=222.12  Aligned_cols=328  Identities=16%  Similarity=0.096  Sum_probs=216.5

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCC---CCcHHHH--HHHH-HHHhhcCCCCCCCCCEEE-cCChHHHHHHHHHhhcCCCC
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPT---LGVPSAR--RGIA-DYLNRDLPYKLSPEDVYL-TLGCSQAIEISLSVLARPGA   98 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~---~~~~~lr--~~ia-~~~~~~~~~~~~~~~i~~-~~g~~~a~~~~~~~l~~~g~   98 (387)
                      .++.+.+++.+.+.+....+|+..   .+...++  +.++ +++.+.++  .+  .+.+ ++|+++++..++.+++++||
T Consensus        57 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g--~~--~~~v~~~sGs~a~~~a~~~~~~~Gd  132 (447)
T 3h7f_A           57 VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFG--AE--FANVQPHSGAQANAAVLHALMSPGE  132 (447)
T ss_dssp             CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT--CS--EEECCCSSHHHHHHHHHHHHCCTTC
T ss_pred             CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcC--CC--ceEEEeCCHHHHHHHHHHHhcCCCC
Confidence            499999999988864322233321   2333333  3333 44444333  22  3444 78889999999999999999


Q ss_pred             eEEEcCCCCcchHHHhh-ccCC--CceeeeeccCCCCCccCChhhHHHhhc-cCceEEEEeCCCCCccccCCHHHHHHHH
Q 038416           99 NILIPRPGYPLYEIHAA-GSNN--NLEARHYDLLPEKRWEVDLDGVEALAD-ENTVAIVIINPGNPCGNVFSYQHLQKIA  174 (387)
Q Consensus        99 ~vl~~~p~~~~~~~~~~-~~~~--g~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~v~l~~p~nptG~~~~~~~~~~l~  174 (387)
                      +|+++.|+|.++..... ....  +..+..+++++ .++.+|+++++++++ .+++++++++|+||++.     ++++|.
T Consensus       133 ~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~i~~~~~~~~~~~-----~l~~i~  206 (447)
T 3h7f_A          133 RLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDP-ATHLIDMDAVRATALEFRPKVIIAGWSAYPRVL-----DFAAFR  206 (447)
T ss_dssp             EEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCT-TTCSCCHHHHHHHHHHHCCSEEEEECSSCCSCC-----CHHHHH
T ss_pred             EEEecCcccccccchhhhhhhcCCeeEEEEcCcCc-ccCCcCHHHHHHHHHhcCCeEEEEcCCCCCCcc-----CHHHHH
Confidence            99999999877322111 0022  23444555543 345789999999885 46888888899999886     489999


Q ss_pred             HHHHhcCcEEeeccccc-ccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhh
Q 038416          175 RTARNLGIIVIADEVYN-HLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGC  253 (387)
Q Consensus       175 ~~~~~~~~~li~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~  253 (387)
                      ++|+++|+++|+|++|. ++.+.+....++..     ..+++.|+||++  +|+|.||+++++        ++++.+...
T Consensus       207 ~l~~~~g~lli~Dea~~~g~~~~g~~~~~~~~-----~di~~~s~sK~l--~G~~gG~i~~~~--------~~~~~l~~~  271 (447)
T 3h7f_A          207 SIADEVGAKLLVDMAHFAGLVAAGLHPSPVPH-----ADVVSTTVHKTL--GGGRSGLIVGKQ--------QYAKAINSA  271 (447)
T ss_dssp             HHHHHHTCEEEEECTTTHHHHHTTSSCCSTTT-----CSEEEEESSGGG--CCCSCEEEEECG--------GGHHHHHHH
T ss_pred             HHHHHcCCEEEEECCchhhhhcCCCCCCCCCC-----CcEEEecCCcCC--CCCCeEEEEECH--------HHHHHHhhh
Confidence            99999999999999975 44444432222211     127789999985  578999999875        677777654


Q ss_pred             hh--ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcC----CCCCCCCCCCceEEEEEecCcccccC
Q 038416          254 LN--AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEI----PCITCPVKPQGAMFVMVKLNVSMLED  327 (387)
Q Consensus       254 ~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~  327 (387)
                      ..  ..+++......++..++....+..+++..+++.++++++.+.|++.    +++..+..+..++++|+.+....   
T Consensus       272 ~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---  348 (447)
T 3h7f_A          272 VFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSP---  348 (447)
T ss_dssp             HTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTSS---
T ss_pred             cCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCCCC---
Confidence            32  2233344445555555554334456888888999999999998875    46664433456778888775321   


Q ss_pred             CCcHHHHHHHHHHhcCeEEE----cC--CccCCCCeEEEEee------CChHhHHHHHHHHHHHHHHh
Q 038416          328 IGDDLEFCLKLAKEESVIIL----PG--RTVGMKNWLRIAFA------AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       328 ~~~~~~~~~~ll~~~gi~v~----~g--~~~~~~~~~Ri~~~------~~~e~~~~~~~~l~~~~~~~  383 (387)
                        ...+.+..+++++||.+.    |+  .....++++||++.      .++++++++++.|.+++++.
T Consensus       349 --~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~~  414 (447)
T 3h7f_A          349 --LDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALATG  414 (447)
T ss_dssp             --CCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHSG
T ss_pred             --CCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence              123455666788899998    55  22334678999982      57899999999999988654

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.95  E-value=1.3e-27  Score=225.95  Aligned_cols=317  Identities=13%  Similarity=0.138  Sum_probs=208.7

Q ss_pred             CcHHHH-H-HHHH---HhcCCCCCCCCC---CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc---
Q 038416           26 DSTVAE-D-AVVD---ALRTAHYNCYSP---TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA---   94 (387)
Q Consensus        26 ~~~~v~-~-a~~~---~~~~~~~~~y~~---~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~---   94 (387)
                      .+|.+. + ++++   ++....  +|+.   .....++++.+++++    + +...++|++++|+++|++.+++.+.   
T Consensus        71 ~~p~v~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~la~~la~~~----~-~~~~~~v~~~~~gseA~~~aik~a~~~~  143 (449)
T 2cjg_A           71 NPPALVDDREFHAELMQAALNK--PSNSDVYSVAMARFVETFARVL----G-DPALPHLFFVEGGALAVENALKAAFDWK  143 (449)
T ss_dssp             SCHHHHTCHHHHHHHHHHHTCC--CCTTTCCCHHHHHHHHHHHHHH----C-CTTCCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhcC--CCCcccCCHHHHHHHHHHHHhc----C-CCCCCEEEEeCchHHHHHHHHHHHHHHh
Confidence            489999 8 9999   776532  2221   112345555555555    2 2467899999999999999997643   


Q ss_pred             C----------C-CCeEEEcCCCCcchHHHhhccCCC--------c-----eeeeeccCC--CCC------ccCChhhHH
Q 038416           95 R----------P-GANILIPRPGYPLYEIHAAGSNNN--------L-----EARHYDLLP--EKR------WEVDLDGVE  142 (387)
Q Consensus        95 ~----------~-g~~vl~~~p~~~~~~~~~~~~~~g--------~-----~~~~~~~~~--~~~------~~~~~~~l~  142 (387)
                      +          + |++|++.+|+|+++..... +..+        .     ++..++.+.  ...      ...++++|+
T Consensus       144 ~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le  222 (449)
T 2cjg_A          144 SRHNQAHGIDPALGTQVLHLRGAFHGRSGYTL-SLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQAR  222 (449)
T ss_dssp             HHHHHHTTSCTTCCCEEEEETTCCCCSSTTGG-GTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccCCCCEEEEECCCcCCcccchh-hhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHH
Confidence            2          2 8999999999997654332 0122        1     334444322  000      013556688


Q ss_pred             Hhhc---cCceEEEEeCC-CCCcc-ccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEec
Q 038416          143 ALAD---ENTVAIVIINP-GNPCG-NVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGS  217 (387)
Q Consensus       143 ~~~~---~~~~~v~l~~p-~nptG-~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s  217 (387)
                      ++++   +++++|+ ++| +||+| ..++.+++++|.++|++||+++|+||+|+++.+.|.... +..++...+   +.|
T Consensus       223 ~~i~~~~~~~~~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~-~~~~~~~~d---i~t  297 (449)
T 2cjg_A          223 AAFETRPHDIACFV-AEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWA-YQQLDVAPD---IVA  297 (449)
T ss_dssp             HHHHHSTTTEEEEE-ECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSST-HHHHTCCCS---EEE
T ss_pred             HHHHhcCCceEEEE-EeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCccee-ecccCCCce---EEE
Confidence            8885   4555555 555 78999 588999999999999999999999999998776654221 111221112   337


Q ss_pred             CcccccccccceEEEEeeCCCCcccchhHHHHH-----Hhh-hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHH
Q 038416          218 ISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSI-----KGC-LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETA  291 (387)
Q Consensus       218 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  291 (387)
                      +||.+     |+||+++++        ++++.+     ... ...+++++++++.++.++++...+   ++..+++++++
T Consensus       298 ~sK~l-----~iG~~~~~~--------~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~~~---~~~~~~~~~~~  361 (449)
T 2cjg_A          298 FGKKT-----QVCGVMAGR--------RVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEA---EGLFERAVQHG  361 (449)
T ss_dssp             ECGGG-----SSEEEEECG--------GGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHHHH---HTHHHHHHHHH
T ss_pred             ecCcc-----cEEEEEECH--------HHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHH
Confidence            89986     799999875        455431     111 124567788899988888874322   23456666777


Q ss_pred             HHHHHHhhc----CCC-CCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eC
Q 038416          292 DICYERIKE----IPC-ITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AA  364 (387)
Q Consensus       292 ~~~~~~l~~----~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~  364 (387)
                      +++++.|++    ++. +. . .+..|.|+++.++..     .+..++...++ ++||.+.|+.    .+++|+++  ..
T Consensus       362 ~~l~~~L~~l~~~~~~~~~-~-~~~~g~~~~~~~~~~-----~~~~~~~~~l~-~~Gv~v~~~g----~~~iRi~~~~~~  429 (449)
T 2cjg_A          362 KYLRARLDELAADFPAVVL-D-PRGRGLMCAFSLPTT-----ADRDELIRQLW-QRAVIVLPAG----ADTVRFRPPLTV  429 (449)
T ss_dssp             HHHHHHHHHHHHHSTTTSE-E-EEEETTEEEEECSSH-----HHHHHHHHHHH-HTTEECEEET----TTEEEECCCTTC
T ss_pred             HHHHHHHHHHHhhCCCcee-e-EeeccEEEEEEECCh-----HHHHHHHHHHH-HCCeEEecCC----CCEEEEECCCCC
Confidence            777777765    343 33 2 233466777777531     12456777775 5799999863    58999977  46


Q ss_pred             ChHhHHHHHHHHHHHHHHh
Q 038416          365 EPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       365 ~~e~~~~~~~~l~~~~~~~  383 (387)
                      +++++++++++|+++++++
T Consensus       430 t~e~i~~~l~~l~~~l~~~  448 (449)
T 2cjg_A          430 STAEIDAAIAAVRSALPVV  448 (449)
T ss_dssp             CHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHh
Confidence            8999999999999998764

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.95  E-value=7.9e-27  Score=216.62  Aligned_cols=212  Identities=17%  Similarity=0.087  Sum_probs=161.2

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHH----HhhccCCCceeee
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEI----HAAGSNNNLEARH  125 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~----~~~~~~~g~~~~~  125 (387)
                      ....++|+.++++++      .  ++.++++++++|++.++. ++++||+|+++.|+|++...    .++  ..|.++..
T Consensus        55 ~~~~~lr~~la~~~g------~--~~~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~--~~G~~v~~  123 (393)
T 1n8p_A           55 PNRENLERAVAALEN------A--QYGLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVAN--AHGVETSF  123 (393)
T ss_dssp             HHHHHHHHHHHHHTT------C--SEEEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTST--TTCSCCEE
T ss_pred             hhHHHHHHHHHHHhC------C--CcEEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHH--HcCcEEEE
Confidence            356789999999983      2  256666667999999999 88999999999999985443    456  67888888


Q ss_pred             eccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhc----CcEEeecccccccccCCCCCc
Q 038416          126 YDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNL----GIIVIADEVYNHLAFGSTPYV  201 (387)
Q Consensus       126 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~----~~~li~D~~~~~~~~~~~~~~  201 (387)
                      ++++       | +++++++++++++|++++|+||||.+++   +++|.++|+++    |+++|+|++|+.+.+. .   
T Consensus       124 v~~~-------d-~~l~~~i~~~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~~-~---  188 (393)
T 1n8p_A          124 TNDL-------L-NDLPQLIKENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYIS-N---  188 (393)
T ss_dssp             ESSH-------H-HHHHHHSCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-C---
T ss_pred             eCCC-------h-HHHHHhcccCceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCccccccC-C---
Confidence            8753       6 8899999889999999999999999997   88899999999    9999999999986652 1   


Q ss_pred             cccccCCCccEEEEecCcccccccccce-EEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHH
Q 038416          202 PMGVFGSIVPVITLGSISKRWIVPGWRL-GWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAF  279 (387)
Q Consensus       202 ~~~~~~~~~~~~~i~s~sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~  279 (387)
                       ...+   +..+++.|+||.++.+|+|+ ||+++++       +++++.+..... .+...++....++...++.     
T Consensus       189 -~~~~---~~di~~~S~sK~~g~~G~rigG~~~~~~-------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~-----  252 (393)
T 1n8p_A          189 -PLNF---GADIVVHSATKYINGHSDVVLGVLATNN-------KPLYERLQFLQNAIGAIPSPFDAWLTHRGLKT-----  252 (393)
T ss_dssp             -GGGG---TCSEEEEETTTTTTCSSCCCCEEEEESC-------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-----
T ss_pred             -HHHc---CCeEEEEECcccccCCCCceeEEEEeCC-------HHHHHHHHHHHHhcCCCCCHHHHHHHHhccch-----
Confidence             1122   24489999999999999999 9998852       257777765543 3445556555555555543     


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCC
Q 038416          280 FAKIIGLLKETADICYERIKEIPC  303 (387)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~l~~~~~  303 (387)
                      +..+.++..++++.+.+.|++.+.
T Consensus       253 ~~~~~~~~~~~~~~l~~~L~~~~~  276 (393)
T 1n8p_A          253 LHLRVRQAALSANKIAEFLAADKE  276 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCC
Confidence            455566666777777777776543

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.95  E-value=4.3e-27  Score=217.40  Aligned_cols=313  Identities=16%  Similarity=0.134  Sum_probs=215.4

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh-cCCCCeEEEc
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL-ARPGANILIP  103 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~g~~vl~~  103 (387)
                      +.++.+.+++.+.+...   .|....+..++|+.++++++        .+++++++|+++|+..++.++ +++||+|+++
T Consensus        14 ~~~~~~~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~--------~~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~   82 (373)
T 3frk_A           14 EIEYEIKFKFEEIYKRN---WFILGDEDKKFEQEFADYCN--------VNYCIGCGNGLDALHLILKGYDIGFGDEVIVP   82 (373)
T ss_dssp             HHHHHHHHHHHHHHHHT---CCSSSHHHHHHHHHHHHHHT--------SSEEEEESCHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             CCCHHHHHHHHHHHHCC---CccCCchHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHcCCCCcCEEEEC
Confidence            35678888888887754   35555678999999999993        248999999999999999999 8999999999


Q ss_pred             CCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcE
Q 038416          104 RPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGII  183 (387)
Q Consensus       104 ~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~  183 (387)
                      .++|+++...++  ..|.++..+++++ +++.+|++++++++++++++|+   |+||||...+   +++|.++|+++|++
T Consensus        83 ~~~~~~~~~~~~--~~g~~~~~~~~~~-~~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~---l~~i~~l~~~~~~~  153 (373)
T 3frk_A           83 SNTFIATALAVS--YTGAKPIFVEPDI-RTYNIDPSLIESAITEKTKAII---AVHLYGQPAD---MDEIKRIAKKYNLK  153 (373)
T ss_dssp             TTSCTHHHHHHH--HHSCEEEEECEET-TTTEECGGGTGGGCCTTEEEEE---EECCTTCCCC---HHHHHHHHHHHTCE
T ss_pred             CCCcHHHHHHHH--HcCCEEEEEeccc-cccCcCHHHHHHhcCCCCeEEE---EECCCcCccc---HHHHHHHHHHcCCE
Confidence            999999999988  8999999998864 3468899999999988888777   6779999876   78889999999999


Q ss_pred             Eeecccccccc-cCCCCCccccccCCCccEEEEecCc--ccccccccceEEEEeeCCCCcccchhHHHHHHhhhhcc---
Q 038416          184 VIADEVYNHLA-FGSTPYVPMGVFGSIVPVITLGSIS--KRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAA---  257 (387)
Q Consensus       184 li~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~s~s--K~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~---  257 (387)
                      +|+|++|+.+. +++.   .+..+ .   .+++.||+  |.++..| +.|++++++       +++.+.++......   
T Consensus       154 li~D~a~~~g~~~~~~---~~~~~-~---d~~~~S~~~~K~l~~~g-~gg~~~~~~-------~~~~~~~~~~~~~g~~~  218 (373)
T 3frk_A          154 LIEDAAQAHGSLYKGM---KVGSL-G---DAAGFSFYPAKNLGSLG-DGGAVVTND-------KDLAEKIKALSNYGSEK  218 (373)
T ss_dssp             EEEECTTCTTCEETTE---ETTSS-S---SEEEEECCTTSSSCCSS-SCEEEEESC-------HHHHHHHHHHHBTTCSB
T ss_pred             EEEECCcccCCEECCE---ecccc-c---cEEEEeCcCCCccCccc-eeEEEEeCC-------HHHHHHHHHHHhcCccc
Confidence            99999998533 2222   11111 1   27778877  8864434 378888764       24666665443211   


Q ss_pred             ----------CCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccC
Q 038416          258 ----------SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLED  327 (387)
Q Consensus       258 ----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  327 (387)
                                ...+.....+....+     ..+++..++.+++.+++.+.|++++ +.....+..+...|..++...   
T Consensus       219 ~~~~~~~g~~~~~~~~~aa~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~---  289 (373)
T 3frk_A          219 KYHHIYKGFNSRLDELQAGFLRVKL-----KYLDKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIRS---  289 (373)
T ss_dssp             TTBCCSCCCBCCCCHHHHHHHHHHH-----HTHHHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEEE---
T ss_pred             CCccccccccCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEEe---
Confidence                      112222222222212     3356677777888888888888875 553322332322222221110   


Q ss_pred             CCcHHHHHHHHHHhcCeEEEcCCccCC-----------------------CCeEEEEee--CChHhHHHHHHHHHHHHHH
Q 038416          328 IGDDLEFCLKLAKEESVIILPGRTVGM-----------------------KNWLRIAFA--AEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       328 ~~~~~~~~~~ll~~~gi~v~~g~~~~~-----------------------~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~  382 (387)
                       .+..++...| .++||.+.++.....                       ...+|++++  .+++|++.+++.|++...+
T Consensus       290 -~~~~~l~~~L-~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~  367 (373)
T 3frk_A          290 -EKRDELQKYL-NNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLE  367 (373)
T ss_dssp             -SSHHHHHHHH-HHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC--
T ss_pred             -CCHHHHHHHH-HHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhh
Confidence             1345566655 566999987641100                       157999994  5899999999999876554


Q ss_pred             h
Q 038416          383 H  383 (387)
Q Consensus       383 ~  383 (387)
                      +
T Consensus       368 ~  368 (373)
T 3frk_A          368 H  368 (373)
T ss_dssp             -
T ss_pred             h
Confidence            3

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.95  E-value=7e-26  Score=210.95  Aligned_cols=214  Identities=14%  Similarity=0.136  Sum_probs=160.2

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHH----hhccCCCceeee
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIH----AAGSNNNLEARH  125 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~----~~~~~~g~~~~~  125 (387)
                      ....++|+.+|++++        .+++++++|+++|+..++.+++++||+|+++.+.|++....    ++  ..|.++..
T Consensus        82 p~~~~le~~lA~l~g--------~~~~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~--~~G~~v~~  151 (415)
T 2fq6_A           82 LTHFSLQQAMCELEG--------GAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILS--KLGVTTSW  151 (415)
T ss_dssp             HHHHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGG--GGTCEEEE
T ss_pred             chHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHH--HcCcEEEE
Confidence            346789999999883        24677778899999999999999999999999999877644    34  57888888


Q ss_pred             eccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHh--cCcEEeecccccccccCCCCCccc
Q 038416          126 YDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARN--LGIIVIADEVYNHLAFGSTPYVPM  203 (387)
Q Consensus       126 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~--~~~~li~D~~~~~~~~~~~~~~~~  203 (387)
                      ++.+       |++++++++++++++|++++|+||+|.+++   +++|+++|++  +|+++|+|++|+....    ..++
T Consensus       152 v~~~-------d~~~le~ai~~~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~g~~livD~a~a~~~~----~~p~  217 (415)
T 2fq6_A          152 FDPL-------IGADIVKHLQPNTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVL----FKAL  217 (415)
T ss_dssp             ECTT-------CGGGGGGGCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTS----SCGG
T ss_pred             ECCC-------CHHHHHHhhccCCcEEEEECCCCCCCEeec---HHHHHHHHHhhcCCCEEEEECCCccccc----CCcc
Confidence            7642       789999999999999999999999999987   7889999999  9999999999985321    1122


Q ss_pred             cccCCCccEEEEecCcccccccccc-eEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHH
Q 038416          204 GVFGSIVPVITLGSISKRWIVPGWR-LGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFA  281 (387)
Q Consensus       204 ~~~~~~~~~~~i~s~sK~~~~~g~r-~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~  281 (387)
                       .+.   ..+++.|++|.++.+|.+ .|++++++        ++++.++.... .+...++...+.+...++     .+.
T Consensus       218 -~~g---~Div~~S~sK~lg~~g~~~~G~l~~~~--------~~~~~l~~~~~~~G~~~~~~~a~~~~~~l~-----~l~  280 (415)
T 2fq6_A          218 -DFG---IDVSIQAATKYLVGHSDAMIGTAVCNA--------RCWEQLRENAYLMGQMVDADTAYITSRGLR-----TLG  280 (415)
T ss_dssp             -GGT---CSEEEEETTTTTTCSSSCCCEEEEECT--------TTHHHHHHHHHHTTCCCCHHHHHHHHHHHH-----HHH
T ss_pred             -ccC---CeEEEEeCccccCCCCCceEEEEEeCH--------HHHHHHHHHHHhcCCCCCHHHHHHHHhhhh-----HHH
Confidence             122   348899999999888754 68888865        45666665443 233444443443333333     356


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCC
Q 038416          282 KIIGLLKETADICYERIKEIPCI  304 (387)
Q Consensus       282 ~~~~~~~~~~~~~~~~l~~~~~~  304 (387)
                      .+.++..++++.+.+.|++.|.+
T Consensus       281 ~r~~~~~~n~~~l~~~L~~~~~v  303 (415)
T 2fq6_A          281 VRLRQHHESSLKVAEWLAEHPQV  303 (415)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTE
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCe
Confidence            66677777888888888776543

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.95  E-value=5.9e-26  Score=211.37  Aligned_cols=283  Identities=16%  Similarity=0.122  Sum_probs=194.2

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHH----HhhccCCCceeee
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEI----HAAGSNNNLEARH  125 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~----~~~~~~~g~~~~~  125 (387)
                      .+..+||+.++++++      .. +.+++++ +++|+..++. ++++||+|+++.|+|++...    .++  ..|.++..
T Consensus        67 p~~~~l~~~la~~~g------~~-~~i~~~s-G~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~--~~G~~v~~  135 (403)
T 3cog_A           67 PTRNCLEKAVAALDG------AK-YCLAFAS-GLAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVAS--EFGLKISF  135 (403)
T ss_dssp             HHHHHHHHHHHHHHT------CS-EEEEESC-HHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGG--GGTCEEEE
T ss_pred             chHHHHHHHHHHHhC------CC-cEEEECC-HHHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHH--HcCCEEEE
Confidence            466899999999984      22 4555555 5699999999 88999999999999987443    345  68999988


Q ss_pred             eccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcC-cEEeecccccccccCCCCCcccc
Q 038416          126 YDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLG-IIVIADEVYNHLAFGSTPYVPMG  204 (387)
Q Consensus       126 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~-~~li~D~~~~~~~~~~~~~~~~~  204 (387)
                      ++.+       |++++++++++++++|++++|+||||.+++   +++|+++|+++| +++|+|++|+.+.+.    .++.
T Consensus       136 v~~~-------d~~~l~~~i~~~t~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~~~~~~----~~~~  201 (403)
T 3cog_A          136 VDCS-------KIKLLEAAITPETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMSPYFQ----RPLA  201 (403)
T ss_dssp             ECTT-------SHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTCTTTC----CTTT
T ss_pred             ECCC-------CHHHHHHhcCcCCeEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcccccC----Cccc
Confidence            8753       789999999989999999999999999997   889999999999 999999999975532    1221


Q ss_pred             ccCCCccEEEEecCcccccccc-cceEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHH
Q 038416          205 VFGSIVPVITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAK  282 (387)
Q Consensus       205 ~~~~~~~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~  282 (387)
                       +   +..+++.|++|.++.+| .++||+++++       +++++.++.... .+...+++.++++...++.     +..
T Consensus       202 -~---~~div~~S~sK~~~g~~~~~~G~v~~~~-------~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~-----l~~  265 (403)
T 3cog_A          202 -L---GADISMYSATKYMNGHSDVVMGLVSVNC-------ESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKT-----LHV  265 (403)
T ss_dssp             -T---TCSEEEEETTTTTTCSSCCCCEEEEECC-------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-----HHH
T ss_pred             -c---CCeEEEEcChhhccCCCCCeEEEEEECc-------HHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhH-----HHH
Confidence             2   34589999999988765 5799999853       257777766543 4456677787777766664     333


Q ss_pred             HHHHHHHHHHHHHHHhhcC--------------CCCCCCCCCC---ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeE
Q 038416          283 IIGLLKETADICYERIKEI--------------PCITCPVKPQ---GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVI  345 (387)
Q Consensus       283 ~~~~~~~~~~~~~~~l~~~--------------~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~  345 (387)
                      +.++...+++.+.+.+++.              |++.+. .+.   .|.++.+.++.       . .+....++++.||.
T Consensus       266 r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~-~~~~~~~g~~~~~~l~~-------~-~~~~~~~l~~~~i~  336 (403)
T 3cog_A          266 RMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELV-KRQCTGCTGMVTFYIKG-------T-LQHAEIFLKNLKLF  336 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHH-HHHCSCCCSEEEEEESS-------C-HHHHHHHHHHCSSS
T ss_pred             HHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHH-HhcCCCCceEEEEEecC-------C-HHHHHHHHHhCCcc
Confidence            4444555555555554433              232211 111   13344445642       1 23445556777875


Q ss_pred             EEc---CC----------cc------------CC-CCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          346 ILP---GR----------TV------------GM-KNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       346 v~~---g~----------~~------------~~-~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      +..   |+          .+            +. ++++|+|++.  ++.++.++.|.+++++..
T Consensus       337 ~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~--e~~~d~i~~l~~al~~~~  399 (403)
T 3cog_A          337 TLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGL--EDEEDLLEDLDQALKAAH  399 (403)
T ss_dssp             EECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHHHHHHHC
T ss_pred             eEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC--CCHHHHHHHHHHHHHHhh
Confidence            542   21          11            22 5789999987  444555666666665543

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.95  E-value=5e-27  Score=219.30  Aligned_cols=320  Identities=13%  Similarity=0.061  Sum_probs=217.0

Q ss_pred             cHHHHHHHHHHhcCCCCCCC------CCCCCcHHHH----HHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCC
Q 038416           27 STVAEDAVVDALRTAHYNCY------SPTLGVPSAR----RGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARP   96 (387)
Q Consensus        27 ~~~v~~a~~~~~~~~~~~~y------~~~~~~~~lr----~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~   96 (387)
                      ++.+.+++.+.+.+....+|      +......+++    +.+++++      +.+++.+++++ |++++..++.+++++
T Consensus        36 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~------g~~~~~i~~~s-Gt~a~~~a~~~~~~~  108 (405)
T 2vi8_A           36 SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLF------GAEHANVQPHS-GAQANMAVYFTVLEH  108 (405)
T ss_dssp             CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH------TCSEEECCCSS-HHHHHHHHHHHHCCT
T ss_pred             CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHh------CCCceEEEecC-cHHHHHHHHHHhcCC
Confidence            99999999998853211122      1111234555    4666666      23333333455 599999999999999


Q ss_pred             CCeEEEcCCCCcchHH-H--hhccCCCc--eeeeeccCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCccccCCHHHH
Q 038416           97 GANILIPRPGYPLYEI-H--AAGSNNNL--EARHYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCGNVFSYQHL  170 (387)
Q Consensus        97 g~~vl~~~p~~~~~~~-~--~~~~~~g~--~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~~  170 (387)
                      ||+|+++.|+|..+.. .  +.  ..|.  ++..+++++ .++.+|++++++++++ +++++++ +|+|. |...+   +
T Consensus       109 gd~Vl~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~v~~-~~~~~-~~~~~---l  180 (405)
T 2vi8_A          109 GDTVLGMNLSHGGHLTHGSPVN--FSGVQYNFVAYGVDP-ETHVIDYDDVREKARLHRPKLIVA-AAAAY-PRIID---F  180 (405)
T ss_dssp             TCEEEEECGGGTCCTTTTCTTS--HHHHHSEEEEECBCT-TTCSBCHHHHHHHHHHHCCSEEEE-CCSSC-CSCCC---H
T ss_pred             CCEEEEecccccchhcccchhh--hccceeEEEeccccc-ccCCcCHHHHHHHHHhcCCeEEEE-eCCCC-CccCC---H
Confidence            9999999999987643 1  12  2333  566666532 3567899999999876 7787776 55443 44434   8


Q ss_pred             HHHHHHHHhcCcEEeeccccccccc-CCCCCccccccCCCccEEEEecCccccc-ccccceEEEEeeCCCCcccchhHHH
Q 038416          171 QKIARTARNLGIIVIADEVYNHLAF-GSTPYVPMGVFGSIVPVITLGSISKRWI-VPGWRLGWLVTSDPNGILQNSGFVD  248 (387)
Q Consensus       171 ~~l~~~~~~~~~~li~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~s~sK~~~-~~g~r~G~i~~~~~~~~~~~~~~~~  248 (387)
                      ++|.++|+++|+++|+|++|+.... .+.....   +..  ..+++.|+||+++ +.|   ||+++++        ++++
T Consensus       181 ~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~---~~~--~di~~~s~sK~~~g~~g---G~~~~~~--------~~~~  244 (405)
T 2vi8_A          181 AKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP---VPY--AHFVTTTTHKTLRGPRG---GMILCQE--------QFAK  244 (405)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS---TTT--CSEEEEESSSTTCCCSC---EEEEECH--------HHHH
T ss_pred             HHHHHHHHHcCCEEEEEccccccccccCcCCCc---ccc--CCEEEEeccccCCCCCC---eEEEEcH--------HHHH
Confidence            9999999999999999999994322 2211111   111  2288899999986 555   9999875        6777


Q ss_pred             HHHhhhh-cc-CCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC-CceEEEEEecCcccc
Q 038416          249 SIKGCLN-AA-SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKP-QGAMFVMVKLNVSML  325 (387)
Q Consensus       249 ~~~~~~~-~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~~~~~~~~~~~~  325 (387)
                      .+..... .. +++++....++..+++...+.++++..++++++++++.+.|+++ ++.+. .| ..++++|+.++... 
T Consensus       245 ~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~~-  321 (405)
T 2vi8_A          245 QIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFTLV-SGGTDNHLLLVDLRPQQ-  321 (405)
T ss_dssp             HHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEG-GGSCSSSEEEEECGGGT-
T ss_pred             HHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeEe-cCCCCceEEEEEccCCC-
Confidence            7765532 22 23345455555556654333577888999999999999999988 77744 33 46788898886321 


Q ss_pred             cCCCcHHHHHHHHHHhcCeEEEcCCc----cC--CCCeEEEEee------CChHhHHHHHHHHHHHHHHhh
Q 038416          326 EDIGDDLEFCLKLAKEESVIILPGRT----VG--MKNWLRIAFA------AEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       326 ~~~~~~~~~~~~ll~~~gi~v~~g~~----~~--~~~~~Ri~~~------~~~e~~~~~~~~l~~~~~~~~  384 (387)
                         .+..++...+ .++||.+.+|..    +.  ..+++|++++      .+++++++++++|++++++..
T Consensus       322 ---~~~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~~  388 (405)
T 2vi8_A          322 ---LTGKTAEKVL-DEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVG  388 (405)
T ss_dssp             ---CCHHHHHHHH-HHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTT
T ss_pred             ---CCHHHHHHHH-HHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhccc
Confidence               1345565555 677999998752    21  2568999996      379999999999999887654

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.95  E-value=3.5e-27  Score=222.03  Aligned_cols=327  Identities=14%  Similarity=0.071  Sum_probs=199.7

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc--CCCCeEEEc
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA--RPGANILIP  103 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~g~~vl~~  103 (387)
                      .+|.+.+++++++.......|+. ....+|++.+++++    +   ..+++++++|++++++.+++...  .+++.|++.
T Consensus        70 ~~p~v~~A~~~~~~~~~~~~~~~-~~~~~la~~l~~~~----~---~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~  141 (429)
T 4e77_A           70 NHPAIRQAVIEAVERGLSFGAPT-EMEVKMAQLVTDLV----P---TMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKF  141 (429)
T ss_dssp             TCHHHHHHHHHHHTTCSCCSSCC-HHHHHHHHHHHHHS----T---TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             CCHHHHHHHHHHHHhCcccCCCC-HHHHHHHHHHHhhC----C---CCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEE
Confidence            58999999999987643223432 23345555555544    2   46899999999999999998653  355789999


Q ss_pred             CCCCcchHHHhhccCCCceee--eeccCCC-------C--C-ccCChhhHHHhhcc--CceEEEEeCCCCC-ccccC-CH
Q 038416          104 RPGYPLYEIHAAGSNNNLEAR--HYDLLPE-------K--R-WEVDLDGVEALADE--NTVAIVIINPGNP-CGNVF-SY  167 (387)
Q Consensus       104 ~p~~~~~~~~~~~~~~g~~~~--~~~~~~~-------~--~-~~~~~~~l~~~~~~--~~~~v~l~~p~np-tG~~~-~~  167 (387)
                      .++|+++..... ...+....  ..+....       .  . ..-|+++|+++++.  ...++++++|+|+ +|... +.
T Consensus       142 ~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~  220 (429)
T 4e77_A          142 EGCYHGHADCLL-VKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLP  220 (429)
T ss_dssp             TTCCCC-------------------CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCT
T ss_pred             cCccCCCChhhh-hhcCCcccccCCCCcCCCCCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCH
Confidence            999987654211 01110000  0000000       0  0 01178999998864  3455666777654 45443 45


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      +.+++|.++|++||+++|+||+|+++ ..+... ....+....+   +.|+||.++ +|+|+||+++++        +++
T Consensus       221 ~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~~-~~~~~~~~pd---i~t~sK~~~-~G~~~G~~~~~~--------~~~  286 (429)
T 4e77_A          221 EFLPGLRALCDEFGALLIIDEVMTGF-RVALAG-AQDYYHVIPD---LTCLGKIIG-GGMPVGAFGGRR--------EVM  286 (429)
T ss_dssp             THHHHHHHHHHHHTCEEEEEETTTBT-TTBTTC-HHHHTTCCCS---EEEEEGGGG-TTSCCEEEEECH--------HHH
T ss_pred             HHHHHHHHHHHHcCCEEEEeccccCc-ccCcch-HHHhcCCCCC---eeeeccccc-CCCCeEEEEECH--------HHH
Confidence            66999999999999999999999987 444321 1112221111   348999987 799999999875        677


Q ss_pred             HHHHhh----hhccCCcchHHHHHHHHHhhhcc-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCc
Q 038416          248 DSIKGC----LNAASHPVTFIQAAVPRIVDETN-EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNV  322 (387)
Q Consensus       248 ~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~  322 (387)
                      +.+...    ...+++.+++++.++.++|+... +..+++..+.....++.+.+.+..++ +. ...+..|.++++.++.
T Consensus       287 ~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~-~~~~~~g~~~~~~~~~  364 (429)
T 4e77_A          287 NALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEEN-IP-LVVNHVGGMFGLFFTN  364 (429)
T ss_dssp             TTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTT-CC-CEEEEETTEEEEECCS
T ss_pred             HHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCC-Cc-eEEEEeeeEEEEEEcc
Confidence            666542    22345788889888888877432 22233333333333444444333343 22 1134557788888764


Q ss_pred             cc-cc--------CCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHH
Q 038416          323 SM-LE--------DIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       323 ~~-~~--------~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~  382 (387)
                      .. ..        +.....++...+ .++||.+.++.    ...+|+++..+++++++++++|++++++
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~----~~~~~~~~~~t~e~i~~~l~~l~~~l~~  428 (429)
T 4e77_A          365 ADTVTCYQDVMNCDVERFKRFFHLM-LEEGVYLAPSA----FEAGFMSLAHSNEDIQKTVNAARRCFAK  428 (429)
T ss_dssp             SSCCCSHHHHHTSCHHHHHHHHHHH-HHTTEECCSST----TSCEECCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             CcccccccccccccHHHHHHHHHHH-HHCCeEEeecC----CCCEEEeccCCHHHHHHHHHHHHHHHHh
Confidence            21 00        000124566666 45699999874    3457777778999999999999998764

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.95  E-value=7.3e-26  Score=217.19  Aligned_cols=330  Identities=12%  Similarity=0.031  Sum_probs=224.0

Q ss_pred             HHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC--------CC-----C
Q 038416           32 DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR--------PG-----A   98 (387)
Q Consensus        32 ~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--------~g-----~   98 (387)
                      +.+..... .+...|.......++++.+.+++.+.+|.+.+.+++++|+|+++++..++.++..        +|     +
T Consensus       111 ~~l~~~~n-~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~  189 (504)
T 2okj_A          111 EWLTSTAN-TNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPK  189 (504)
T ss_dssp             HHHHHHHC-CBSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCC
T ss_pred             HHHHHhhc-cCCCchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCC
Confidence            34444333 3333555545556778888777777766544467999999999999999988752        56     6


Q ss_pred             -eEEEcCCCCcchHHHhhccCCCc---eeeeeccCCCCCccCChhhHHHhhcc------CceEEEEeCCCCCccccCCHH
Q 038416           99 -NILIPRPGYPLYEIHAAGSNNNL---EARHYDLLPEKRWEVDLDGVEALADE------NTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        99 -~vl~~~p~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~  168 (387)
                       .|+++.++|+++...+.  ..|.   +++.+|++  .++.+|+++|++++++      ++++|++++|+||||.+.+  
T Consensus       190 ~~v~~s~~~h~s~~~~~~--~~g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~--  263 (504)
T 2okj_A          190 LVLFTSEQSHYSIKKAGA--ALGFGTDNVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP--  263 (504)
T ss_dssp             EEEEEETTSCTHHHHHHH--HTTSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC--
T ss_pred             eEEEECCcchHHHHHHHH--HcCCCcccEEEEecC--CCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC--
Confidence             78899999999998888  7766   78888874  3578999999999875      5789999999999999966  


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCc-cccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYV-PMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                       +++|+++|+++|+++++|++|+++.+...... .+..+.  ...+++.+++|+++.| .++|+++++++.       +.
T Consensus       264 -l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~--~~D~i~~~~hK~~~~p-~~~g~l~~~~~~-------~~  332 (504)
T 2okj_A          264 -IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIE--RANSVTWNPHKMMGVL-LQCSAILVKEKG-------IL  332 (504)
T ss_dssp             -HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGG--GCSEEEECTTSTTCCC-SCCEEEEESSTT-------HH
T ss_pred             -HHHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcc--cCCEEEECchhhcCCC-cceEEEEEECHH-------HH
Confidence             88999999999999999999998765432221 222221  1126678899997655 689999997632       33


Q ss_pred             HHHHhh-hh-c-cC-------------------CcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 038416          248 DSIKGC-LN-A-AS-------------------HPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCIT  305 (387)
Q Consensus       248 ~~~~~~-~~-~-~~-------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  305 (387)
                      +..... .. . ..                   ....+.++++..++.   ...+.+..++..++++++.+.|+++|+++
T Consensus       333 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg---~~g~~~~~~~~~~~a~~l~~~L~~~~~~~  409 (504)
T 2okj_A          333 QGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG---TVGFENQINKCLELAEYLYAKIKNREEFE  409 (504)
T ss_dssp             HHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTTCTTEE
T ss_pred             HHHhcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence            322111 00 0 00                   012344444444443   46688888999999999999999988888


Q ss_pred             CCC--CCCceEEEEEecCcccc--cCC--------CcHHHHHHHHHHhcCeEEEcCCccCC-CCeEEEEee---CChHhH
Q 038416          306 CPV--KPQGAMFVMVKLNVSML--EDI--------GDDLEFCLKLAKEESVIILPGRTVGM-KNWLRIAFA---AEPATL  369 (387)
Q Consensus       306 ~~~--~~~~g~~~~~~~~~~~~--~~~--------~~~~~~~~~ll~~~gi~v~~g~~~~~-~~~~Ri~~~---~~~e~~  369 (387)
                      ++.  .|..++++|...+....  ...        ....++...+. +.|+.+..+..+.. .+++|++++   ++++++
T Consensus       410 ~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi  488 (504)
T 2okj_A          410 MVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMM-ESGTTMVGYQPQGDKANFFRMVISNPAATQSDI  488 (504)
T ss_dssp             ESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHH-HHTSCEEEEEEETTEEEEEEECCCCTTCCHHHH
T ss_pred             EEecCCCCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHH-hCCcEEEEeeEECCceEEEEEEeCCCCCCHHHH
Confidence            654  36667666544442100  000        00234555554 45754433222322 368999996   589999


Q ss_pred             HHHHHHHHHHHHHh
Q 038416          370 EDGLERIKAFCQRH  383 (387)
Q Consensus       370 ~~~~~~l~~~~~~~  383 (387)
                      +.+++.|+++++++
T Consensus       489 ~~~~~~l~~~~~~~  502 (504)
T 2okj_A          489 DFLIEEIERLGQDL  502 (504)
T ss_dssp             HHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887654

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.95  E-value=9.7e-27  Score=218.38  Aligned_cols=329  Identities=13%  Similarity=0.020  Sum_probs=207.4

Q ss_pred             CcHHHHHHHHHHhcCCCCCC------CCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCe
Q 038416           26 DSTVAEDAVVDALRTAHYNC------YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGAN   99 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~------y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~   99 (387)
                      .++.+.+++.+++.+....+      |+.......+++...+++.+.+  +.+++.|++++ |++++..++.+++++||+
T Consensus        42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~--~~~~~~v~~~s-Gs~a~~~a~~~~~~~gd~  118 (420)
T 3gbx_A           42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELF--GADYANVQPHS-GSQANFAVYTALLQPGDT  118 (420)
T ss_dssp             CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHH--TCSEEECCCSS-HHHHHHHHHHHHCCTTCE
T ss_pred             CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHh--CCCCceeEecC-cHHHHHHHHHHhcCCCCE
Confidence            68999999999885432112      2222222344433333333333  34555565555 488999999999999999


Q ss_pred             EEEcCCCCcchH---HHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCccccCCHHHHHHHHH
Q 038416          100 ILIPRPGYPLYE---IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCGNVFSYQHLQKIAR  175 (387)
Q Consensus       100 vl~~~p~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~~~~l~~  175 (387)
                      |+++.|+|.++.   ....  ..|..+..+++..+.++.+|+++|++++++ ++++|++++|+||+  ..+   +++|.+
T Consensus       119 v~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~--~~~---l~~l~~  191 (420)
T 3gbx_A          119 VLGMNLAQGGHLTHGSPVN--FSGKLYNIVPYGIDESGKIDYDEMAKLAKEHKPKMIIGGFSAYSG--VVD---WAKMRE  191 (420)
T ss_dssp             EEEEEEC--------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHHCCSEEEECCTTCCS--CCC---HHHHHH
T ss_pred             EEecchhhcceeccchhhh--hcccceeEEeccCCccCCcCHHHHHHHHHhcCCeEEEEecCccCC--ccC---HHHHHH
Confidence            999999997743   2222  334444433332234567899999999976 58999998999864  444   889999


Q ss_pred             HHHhcCcEEeecccccc-cccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhh
Q 038416          176 TARNLGIIVIADEVYNH-LAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL  254 (387)
Q Consensus       176 ~~~~~~~~li~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~  254 (387)
                      +|++||+++|+|++|+. +...+.....+..     ..+++.|+||+++  |.+.||+++++.-     +++.+.+....
T Consensus       192 l~~~~~~~li~De~~~~~~~~~~~~~~~~~~-----~di~~~s~sK~~~--g~~gg~~~~~~~~-----~~~~~~~~~~~  259 (420)
T 3gbx_A          192 IADSIGAYLFVDMAHVAGLIAAGVYPNPVPH-----AHVVTTTTHKTLA--GPRGGLILAKGGD-----EELYKKLNSAV  259 (420)
T ss_dssp             HHHHTTCEEEEECTTTHHHHHTTSSCCSTTT-----SSEEEEESSGGGC--SCSCEEEEESSCC-----HHHHHHHHHHH
T ss_pred             HHHHcCCEEEEECCcchhceecccCCccccc-----CCEEEeecccCCC--CCCceEEEEcCCc-----HHHHHHhhhhc
Confidence            99999999999999863 3333322222221     2388999999974  5556999986410     13555555432


Q ss_pred             h--ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHH
Q 038416          255 N--AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDL  332 (387)
Q Consensus       255 ~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  332 (387)
                      .  ...+++...+.++..++....+..+++..+++.++++.+.+.|++. ++.++..+..++++|+.++...    .+. 
T Consensus       260 ~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~----~~~-  333 (420)
T 3gbx_A          260 FPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR-GYKVVSGGTENHLFLLDLVDKN----LTG-  333 (420)
T ss_dssp             C----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGT----CCH-
T ss_pred             CCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc-CCeeccCCCCCeEEEEEcCCCC----CCH-
Confidence            2  1223444445554444443334567888899999999999999885 6774422356778888775321    133 


Q ss_pred             HHHHHHHHhcCeEEEc-------CCccCCCCeEEEEee------CChHhHHHHHHHHHHHHHHh
Q 038416          333 EFCLKLAKEESVIILP-------GRTVGMKNWLRIAFA------AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       333 ~~~~~ll~~~gi~v~~-------g~~~~~~~~~Ri~~~------~~~e~~~~~~~~l~~~~~~~  383 (387)
                      +.+..+++++||.+.+       |..|. ...+||++.      .++++++++++.|++++++.
T Consensus       334 ~~~~~~l~~~gi~v~~~~~~~~~~~~~~-~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~~  396 (420)
T 3gbx_A          334 KEADAALGRANITVNKNSVPNDPKSPFV-TSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNI  396 (420)
T ss_dssp             HHHHHHHHHTTEECEEECCTTCSSCTTT-CSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCcEeccccCCCCccccCC-CcceEEecchhcccCCCHHHHHHHHHHHHHHHhCc
Confidence            4445555778999998       33332 356999993      35789999999999888653

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.95  E-value=2.5e-27  Score=225.51  Aligned_cols=329  Identities=15%  Similarity=0.133  Sum_probs=209.5

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCC-----C----C
Q 038416           28 TVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARP-----G----A   98 (387)
Q Consensus        28 ~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~-----g----~   98 (387)
                      +.+.+++.+++.... ..|+...+..+||+.+++++.        .+++++|+|+++|+..++.++.++     |    |
T Consensus        53 ~~v~~a~~~~l~~~~-~~y~~~~~~~~l~~~la~~~~--------~~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d  123 (467)
T 2oqx_A           53 GAVTQSMQAAMMRGD-EAYSGSRSYYALAESVKNIFG--------YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSK  123 (467)
T ss_dssp             SCCCHHHHHHTTSCC-CCSSSCHHHHHHHHHHHHHHC--------CSEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTT
T ss_pred             HHHHHHHHHHhccCc-ceeccCchhHHHHHHHHHHhC--------cCcEEEcCCcHHHHHHHHHHHhccccccCCCCccc
Confidence            778888888876532 357666677899999999982        378999999999999999999887     8    9


Q ss_pred             eEEEcCCCCc-chHHHhhccCCCceeeeec----cCCC----CCccCChhhHHHhhc----cCceEEEEeCCCCCc-ccc
Q 038416           99 NILIPRPGYP-LYEIHAAGSNNNLEARHYD----LLPE----KRWEVDLDGVEALAD----ENTVAIVIINPGNPC-GNV  164 (387)
Q Consensus        99 ~vl~~~p~~~-~~~~~~~~~~~g~~~~~~~----~~~~----~~~~~~~~~l~~~~~----~~~~~v~l~~p~npt-G~~  164 (387)
                      +|++. +.|+ .+.....  ..|..+....    ++..    .++.+|+++|+++++    +++++|++++|+||+ |.+
T Consensus       124 ~Ii~~-~~h~~t~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~  200 (467)
T 2oqx_A          124 MVAFS-NYFFDTTQGHSQ--INGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQP  200 (467)
T ss_dssp             CEEEE-SSCCHHHHHHHH--HTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBC
T ss_pred             eEEec-ccccccchhhhh--ccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCcc
Confidence            88877 4443 3333333  3444433221    1111    234679999999997    378999999999997 899


Q ss_pred             CCHHHHHHHHHHHHhcCcEEeecccccc----------cccCCCCCccccc--cCCCccEEEEecCccccccc-ccceEE
Q 038416          165 FSYQHLQKIARTARNLGIIVIADEVYNH----------LAFGSTPYVPMGV--FGSIVPVITLGSISKRWIVP-GWRLGW  231 (387)
Q Consensus       165 ~~~~~~~~l~~~~~~~~~~li~D~~~~~----------~~~~~~~~~~~~~--~~~~~~~~~i~s~sK~~~~~-g~r~G~  231 (387)
                      ++.+++++|.++|++||+++|+|+++..          ..+.+.....+..  ... .. +++.|+||.++++ |   ||
T Consensus       201 ~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~-~d-~~~~s~sK~~g~~~G---g~  275 (467)
T 2oqx_A          201 VSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKY-AD-MLAMSAKKDAMVPMG---GL  275 (467)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGG-CS-EEEEESSSTTCCSSC---EE
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhcc-CC-eEEEecccccCCCCc---eE
Confidence            9999999999999999999999976643          1233322212210  011 11 4578999998766 3   77


Q ss_pred             EEeeCCCCcccchhHHHHHHhhh--hc----cCCcchHHHHHHHHHhhhccHHHH-HHHHHHHHHHHHHHHHHhhcCCCC
Q 038416          232 LVTSDPNGILQNSGFVDSIKGCL--NA----ASHPVTFIQAAVPRIVDETNEAFF-AKIIGLLKETADICYERIKEIPCI  304 (387)
Q Consensus       232 i~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~  304 (387)
                      +++++.. +.   +....++...  ..    ....+.....++...+..    ++ ++..++..++++.+.+.|+++ ++
T Consensus       276 ~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~----~~~~~~~~~~~~~~~~l~~~L~~~-~~  346 (467)
T 2oqx_A          276 LCMKDDS-FF---DVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYD----GMNLDWLAYRIAQVQYLVDGLEEI-GV  346 (467)
T ss_dssp             EEECSGG-GH---HHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             EEecChh-HH---HHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHh----hhhHHHHHHHHHHHHHHHHHHHHC-CC
Confidence            7776510 00   1333333321  10    111122222222222221    11 123344567788888888887 77


Q ss_pred             CCCCCCCceEEEEEecCc--ccccCCC-cHHHHHHHHHHhcCeEEEcCCcc--C-----------CCCeEEEEee---CC
Q 038416          305 TCPVKPQGAMFVMVKLNV--SMLEDIG-DDLEFCLKLAKEESVIILPGRTV--G-----------MKNWLRIAFA---AE  365 (387)
Q Consensus       305 ~~~~~~~~g~~~~~~~~~--~~~~~~~-~~~~~~~~ll~~~gi~v~~g~~~--~-----------~~~~~Ri~~~---~~  365 (387)
                      .+.  |.+++++|+.++.  ....... +...+...++.++||.+.|++.|  +           ..+++|++++   .+
T Consensus       347 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t  424 (467)
T 2oqx_A          347 VCQ--QAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYT  424 (467)
T ss_dssp             CEE--EECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSC
T ss_pred             eee--cCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCC
Confidence            733  6678888888742  1111000 13344666647789999985532  1           1378999996   78


Q ss_pred             hHhHHHHHHHHHHHHHHhh
Q 038416          366 PATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       366 ~e~~~~~~~~l~~~~~~~~  384 (387)
                      ++++++++++|++++++..
T Consensus       425 ~e~i~~~~~~l~~~l~~~~  443 (467)
T 2oqx_A          425 QTHMDFIIEAFKHVKENAA  443 (467)
T ss_dssp             HHHHHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHHHHHHHhhhh
Confidence            9999999999999987654

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.95  E-value=3.7e-27  Score=218.18  Aligned_cols=300  Identities=13%  Similarity=0.115  Sum_probs=208.8

Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchH--HHhhccCCC--ceeeeeccC
Q 038416           54 SARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYE--IHAAGSNNN--LEARHYDLL  129 (387)
Q Consensus        54 ~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~--~~~~~~~~g--~~~~~~~~~  129 (387)
                      ++.+.+++.+.+.++  .+ +.+++|+|+++++++++..+ ++||+|+++.++|+++.  ..+.  ..|  .++..++.+
T Consensus        35 ~~~~~~~~~l~~~~~--~~-~~v~~~~sgt~a~~~~~~~~-~~gd~vi~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~  108 (379)
T 3ke3_A           35 EVMNDLLSNLKTVYN--AE-AAVIIPGSGTYGMEAVARQL-TIDEDCLIIRNGWFSYRWTQILE--KGKFAKSSTVLTAE  108 (379)
T ss_dssp             HHHHHHHHHHHHHHT--CS-EEEEEESCHHHHHHHHHHHH-CTTCEEEEEECSHHHHHHHHHHH--HHCCSSEEEEEECE
T ss_pred             HHHHHHHHHHHHHhC--CC-CEEEEcCChhHHHHHHHHhC-CCCCeEEEEeCCchhHHHHHHHH--HhCCCCceEEEecc
Confidence            444444444444433  23 68889999999999988654 68999999999998643  3344  445  366666653


Q ss_pred             CC------CC-ccCChhhHHHhhc-cCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCc
Q 038416          130 PE------KR-WEVDLDGVEALAD-ENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYV  201 (387)
Q Consensus       130 ~~------~~-~~~~~~~l~~~~~-~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~  201 (387)
                      ..      .. ..+|+++++++++ +++++|++++++|+||..++.+++++|.++|+++|+++|+|++++ .   + ...
T Consensus       109 ~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g---~-~~~  183 (379)
T 3ke3_A          109 RTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-G---C-VWL  183 (379)
T ss_dssp             ESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-T---T-CCC
T ss_pred             ccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-C---C-ccc
Confidence            21      11 2479999999985 478999999999999999999999999999999999999999986 2   2 122


Q ss_pred             cccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhh-------------------h----ccC
Q 038416          202 PMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL-------------------N----AAS  258 (387)
Q Consensus       202 ~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~-------------------~----~~~  258 (387)
                      .+..+..   .+++.|++|+++.+ .++|++++++        ++++.+....                   .    +.+
T Consensus       184 ~~~~~~~---d~~~~s~~K~l~~~-~g~g~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  251 (379)
T 3ke3_A          184 DMKELGI---DVLISAPQKGWSST-PCAGLVMLSA--------AAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHA  251 (379)
T ss_dssp             CHHHHTC---SEEEECTTTTTCSC-CCEEEEEECH--------HHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSS
T ss_pred             cccccCC---CEEEecchhhcCCC-CceEEEEECH--------HHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCC
Confidence            2222222   37888999986432 3489999875        4555544210                   0    123


Q ss_pred             CcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC--ceEEEEEecCcccccCCCcHHHHHH
Q 038416          259 HPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ--GAMFVMVKLNVSMLEDIGDDLEFCL  336 (387)
Q Consensus       259 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~  336 (387)
                      +++...+.++.++++...+..++++.++.+++++++++.|+++ ++.+...+.  ......+.++.       ....+..
T Consensus       252 t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~  323 (379)
T 3ke3_A          252 TMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDK-GIESVAAEGFEAPGVVVSYTER-------DDMHKGS  323 (379)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSBCTTCBCSSEEEEECSC-------HHHHSSH
T ss_pred             CCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCEecCCccccCceEEEEccCC-------cchHHHH
Confidence            6777777788777775444457888889999999999999988 677442221  12222222321       1122233


Q ss_pred             HHHHhcCeEEEcCCccCC-----CCeEEEEee--CChHhHHHHHHHHHHHHHHhhh
Q 038416          337 KLAKEESVIILPGRTVGM-----KNWLRIAFA--AEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       337 ~ll~~~gi~v~~g~~~~~-----~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                       .+.++||.+.+|..+..     .+.+||++.  .+++++++++++|+++++++..
T Consensus       324 -~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~~  378 (379)
T 3ke3_A          324 -AFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVLA  378 (379)
T ss_dssp             -HHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHHC
T ss_pred             -HHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhcc
Confidence             44677999999876532     578999994  5789999999999999988753

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.95  E-value=1.8e-26  Score=212.71  Aligned_cols=304  Identities=18%  Similarity=0.182  Sum_probs=217.2

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh-cCCCCeEEEc
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL-ARPGANILIP  103 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~g~~vl~~  103 (387)
                      +.++.+.+++.+.+...   .|.+..+..++|+.++++++        .+++++++|+++|+..++.++ .++||+|+++
T Consensus        13 ~~~~~v~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~--------~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~   81 (367)
T 3nyt_A           13 RIKDKIDAGIQRVLRHG---QYILGPEVTELEDRLADFVG--------AKYCISCANGTDALQIVQMALGVGPGDEVITP   81 (367)
T ss_dssp             HHHHHHHHHHHHHHHHC---CCSSCHHHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             ccCHHHHHHHHHHHhcC---CccCChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHhCCCCcCEEEEC
Confidence            45678888888887654   34444578899999999993        348999999999999999999 8999999999


Q ss_pred             CCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcE
Q 038416          104 RPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGII  183 (387)
Q Consensus       104 ~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~  183 (387)
                      .++|.++...+.  ..|.+++.++++++ ++.+|++++++++++++++|+   |+||+|...+   +++|.++|+++|++
T Consensus        82 ~~~~~~~~~~~~--~~G~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~---~~~i~~la~~~~~~  152 (367)
T 3nyt_A           82 GFTYVATAETVA--LLGAKPVYVDIDPR-TYNLDPQLLEAAITPRTKAII---PVSLYGQCAD---FDAINAIASKYGIP  152 (367)
T ss_dssp             SSSCTHHHHHHH--HTTCEEEEECBCTT-TCSBCGGGTGGGCCTTEEEEC---CBCGGGCCCC---HHHHHHHHHHTTCC
T ss_pred             CCccHHHHHHHH--HcCCEEEEEecCCc-cCCcCHHHHHHhcCcCCcEEE---eeCCccChhh---HHHHHHHHHHcCCE
Confidence            999999999999  99999999988643 368899999999988888777   7889998765   88899999999999


Q ss_pred             Eeecccccc-cccCCCCCccccccCCCccEEEEecC--cccccccccceEEEEeeCCCCcccchhHHHHHHhhhhc----
Q 038416          184 VIADEVYNH-LAFGSTPYVPMGVFGSIVPVITLGSI--SKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNA----  256 (387)
Q Consensus       184 li~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~s~--sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~----  256 (387)
                      +|+|++|+. ..+.+.....   +.    .+++.||  +|.++.+|. .|++++++       +++.+.++.....    
T Consensus       153 li~D~a~~~g~~~~~~~~~~---~~----di~~~Sf~~~K~l~~~g~-gg~~~~~~-------~~l~~~~~~~~~~g~~~  217 (367)
T 3nyt_A          153 VIEDAAQSFGASYKGKRSCN---LS----TVACTSFFPSAPLGCYGD-GGAIFTND-------DELATAIRQIARHGQDR  217 (367)
T ss_dssp             BEEECTTTTTCEETTEETTS---SS----SEEEEECCTTSSSCCSSC-CEEEEESC-------HHHHHHHHHHTBTTEEE
T ss_pred             EEEECccccCCeECCeeccC---CC----CEEEEECCCCCcCCCcCc-eeEEEeCC-------HHHHHHHHHHHhcCCCc
Confidence            999999984 3333322221   22    2778887  899877566 78888854       2566666654321    


Q ss_pred             ---------cCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceE----EEEEecCcc
Q 038416          257 ---------ASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAM----FVMVKLNVS  323 (387)
Q Consensus       257 ---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~----~~~~~~~~~  323 (387)
                               +...++...+++...++.     +++..++.+++++++.+.|+++ ++.....+..+.    .+.+.++  
T Consensus       218 ~~~~~~~g~~~~~~~~~aa~~~~~l~~-----~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~--  289 (367)
T 3nyt_A          218 RYHHIRVGVNSRLDTLQAAILLPKLEI-----FEEEIALRQKVAAEYDLSLKQV-GIGTPFIEVNNISVYAQYTVRMD--  289 (367)
T ss_dssp             TTEECSCCCBCCCCHHHHHHHHHHHHT-----HHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCTTEECCCSSEEEECS--
T ss_pred             CceeeccCcCCCccHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhccC-CeeccCCCCCCceeeEEEEEEeC--
Confidence                     234455554444444432     4556667777778888888887 444332222221    1222332  


Q ss_pred             cccCCCcHHHHHHHHHHhcCeEEEcCCc--------cC--C----------CCeEEEEee--CChHhHHHHHHHHHH
Q 038416          324 MLEDIGDDLEFCLKLAKEESVIILPGRT--------VG--M----------KNWLRIAFA--AEPATLEDGLERIKA  378 (387)
Q Consensus       324 ~~~~~~~~~~~~~~ll~~~gi~v~~g~~--------~~--~----------~~~~Ri~~~--~~~e~~~~~~~~l~~  378 (387)
                            +..++...| +++||.+.++..        |.  .          ...+|++++  .+++|++.+++.|++
T Consensus       290 ------~~~~l~~~L-~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~  359 (367)
T 3nyt_A          290 ------NRESVQASL-KAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTN  359 (367)
T ss_dssp             ------SHHHHHHHH-HHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC
T ss_pred             ------CHHHHHHHH-HHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence                  344565555 666998887642        10  0          246899884  589999999988865

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.95  E-value=1.1e-25  Score=215.72  Aligned_cols=337  Identities=13%  Similarity=0.082  Sum_probs=226.9

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh----c-----
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL----A-----   94 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l----~-----   94 (387)
                      .+.++.+.+++.....+.+...|.......++++.+.+++.+.+|.+ ..+++++|+|+++++..++.++    +     
T Consensus       110 ~~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~-~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~  188 (497)
T 2qma_A          110 PPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLS-EKADGIFTSGGTQSNQMGLMLARDWIADKLSG  188 (497)
T ss_dssp             CCBHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCC-TTCEEEEESSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCC-CCCCeEEcCCchHHHHHHHHHHHHHHHHhhcc
Confidence            45778888877666555433345544456788888888888777653 3378999999999999998873    2     


Q ss_pred             ----CC------CC-eEEEcCCCCcchHHHhhccCCCc---eeeeeccCCCCCccCChhhHHHhhccC----ce--EEEE
Q 038416           95 ----RP------GA-NILIPRPGYPLYEIHAAGSNNNL---EARHYDLLPEKRWEVDLDGVEALADEN----TV--AIVI  154 (387)
Q Consensus        95 ----~~------g~-~vl~~~p~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~--~v~l  154 (387)
                          ++      |+ .|+++.++|+++...+.  ..|.   +++.+|++  .++.+|+++|+++++++    ++  +|++
T Consensus       189 ~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~--~~g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~~~~~~~vv~  264 (497)
T 2qma_A          189 HSIQKLGLPDYADKLRIVCSKKSHFTVQKSAS--WMGLGEKAVMTVDAN--ADGTMDITKLDEVIAQAKAEGLIPFAIVG  264 (497)
T ss_dssp             CCHHHHCSCGGGGGEEEEEETTSCTHHHHHHH--HTTSCGGGEEEECBC--TTSSBCGGGHHHHHHHHHHTTCEEEEEEE
T ss_pred             cchhhcccccccCCeEEEECCCchHHHHHHHH--HcCCCcccEEEEecC--CCCcCCHHHHHHHHHHHHHCCCcceEEEE
Confidence                12      45 79999999999988888  7765   68888874  45689999999988653    44  7888


Q ss_pred             eCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCCccEEEEecCcccccccccceEEEE
Q 038416          155 INPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVITLGSISKRWIVPGWRLGWLV  233 (387)
Q Consensus       155 ~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~  233 (387)
                      ++++||||...+   +++|+++|++||+++|+|++|+.+..... ... +..+.  ...+++.|++|+++.+ .++|+++
T Consensus       265 ~~~~~~tG~~~~---l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi~--~~D~i~~s~hK~l~~p-~~~G~l~  337 (497)
T 2qma_A          265 TAGTTDHGAIDD---LDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKGVE--RAHSISVDFHKLFYQT-ISCGALL  337 (497)
T ss_dssp             EBSCTTTCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTTGG--GCSEEEEETTTTTCCC-SSCEEEE
T ss_pred             cCCCCCCCCCCC---HHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcCcc--cCCEEEEcchhccCCC-cceEEEE
Confidence            899999999865   88999999999999999999998765433 211 22221  1126677899997665 6899999


Q ss_pred             eeCCCCcccchhHHHHHHh---hhhccC--CcchHH----------HHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHh
Q 038416          234 TSDPNGILQNSGFVDSIKG---CLNAAS--HPVTFI----------QAAVPRIVDETNEAFFAKIIGLLKETADICYERI  298 (387)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l  298 (387)
                      ++++.       .++.+..   +.....  .++...          ...+...+.....+.+.+..++..++++++.+.|
T Consensus       338 ~~~~~-------~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L  410 (497)
T 2qma_A          338 VNDKS-------NFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMI  410 (497)
T ss_dssp             ESCGG-------GGGGGCC--------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeCHH-------HHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence            97632       1111111   000000  011110          1111122333345678888899999999999999


Q ss_pred             hcCCCCCCCCCCCceEEEEEecCcccccCCCc--HHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe---eCChHhHHHHH
Q 038416          299 KEIPCITCPVKPQGAMFVMVKLNVSMLEDIGD--DLEFCLKLAKEESVIILPGRTVGMKNWLRIAF---AAEPATLEDGL  373 (387)
Q Consensus       299 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~---~~~~e~~~~~~  373 (387)
                      +++++++++..|..+ ++++++.....  ..+  ..++...+ .+.|+.+.++..+....++|+++   .++++++++++
T Consensus       411 ~~~~~~~~~~~~~~~-~v~f~~~~~~~--~~~~l~~~l~~~l-~~~G~~~~~~~~~~g~~~lRis~~~~~~t~edi~~~~  486 (497)
T 2qma_A          411 RTNDQFELLAEPSLS-TVLFRATHETA--DLDELNKALRLEA-LTRGIAVLGETIVDGKTALKFTILNPCLTTSDFESLL  486 (497)
T ss_dssp             HTCTTEEECSCCSSS-EEEEEECCSSS--CHHHHHHHHHHHH-HHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHH
T ss_pred             hhCCCeEEEcCCCce-EEEEEEcCCcc--CHHHHHHHHHHHH-HhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHH
Confidence            998888855455554 55556542110  000  12344444 55688877655454457899998   35899999999


Q ss_pred             HHHHHHHHHh
Q 038416          374 ERIKAFCQRH  383 (387)
Q Consensus       374 ~~l~~~~~~~  383 (387)
                      +.|+++++++
T Consensus       487 ~~l~~~~~~~  496 (497)
T 2qma_A          487 SKINMLAVEL  496 (497)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhh
Confidence            9999988764

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.95  E-value=2.3e-26  Score=212.16  Aligned_cols=318  Identities=12%  Similarity=0.087  Sum_probs=218.3

Q ss_pred             CCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH-HHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh-cCCC
Q 038416           20 GVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGI-ADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL-ARPG   97 (387)
Q Consensus        20 ~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~i-a~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~g   97 (387)
                      ..|+++.++.+.+++.+.+....+..|+  ....++|+.+ +++++       ..+++++++|+++|+..++.++ +++|
T Consensus         8 ~~p~~~~~~~i~~a~~~~~~~~~~~~~~--~~~~~l~~~~~a~~~g-------~~~~~v~~~sgt~al~~al~~l~~~~G   78 (377)
T 3ju7_A            8 LRASTVPVIEYLDELKEIDASHIYTNYG--PINQRFEQTIMSGFFQ-------NRGAVTTVANATLGLMAAIQLKKRKKG   78 (377)
T ss_dssp             CCCCCCCGGGGHHHHHHHHHHTCCSSSC--HHHHHHHHHHHHHTST-------TCSEEEEESCHHHHHHHHHHHHSCTTC
T ss_pred             cCCCCCCcHHHHHHHHHHHHcCCcccCC--HHHHHHHHHHHHHHhC-------CCCeEEEeCCHHHHHHHHHHHcCCCCc
Confidence            4559999999999999999875432233  3468999999 99882       2568899999999999999998 8999


Q ss_pred             CeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhh-ccC--ceEEEEeCCCCCccccCCHHHHHHHH
Q 038416           98 ANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALA-DEN--TVAIVIINPGNPCGNVFSYQHLQKIA  174 (387)
Q Consensus        98 ~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~~--~~~v~l~~p~nptG~~~~~~~~~~l~  174 (387)
                      |+|+++.|+|..+...+.  ..|.+++.+++++ +++.+|++++++++ +++  +++|+   |+||+|...+   +++|.
T Consensus        79 d~Vi~~~~~~~~~~~~~~--~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~---~~~i~  149 (377)
T 3ju7_A           79 KYALMPSFTFPATPLAAI--WCGLEPYFIDISI-DDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMN---LEEYE  149 (377)
T ss_dssp             CEEEEESSSCTHHHHHHH--HTTCEEEEECBCT-TTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCC---CHHHH
T ss_pred             CEEEECCCCcHHHHHHHH--HcCCEEEEEecCC-ccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccC---HHHHH
Confidence            999999999999999999  9999999999864 46789999999988 566  88776   6778999877   78888


Q ss_pred             HHHHhcCcEEeecccccccc-cCCCCCccc-cccCCCccEEEEecC--cccccccccceEEEEeeCCCCcccchhHHHHH
Q 038416          175 RTARNLGIIVIADEVYNHLA-FGSTPYVPM-GVFGSIVPVITLGSI--SKRWIVPGWRLGWLVTSDPNGILQNSGFVDSI  250 (387)
Q Consensus       175 ~~~~~~~~~li~D~~~~~~~-~~~~~~~~~-~~~~~~~~~~~i~s~--sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~  250 (387)
                      ++|+ +|+++|+|++|+... +.+.   ++ ..+ .   .+.+.||  +|.++. | +.|++++++       +++.+++
T Consensus       150 ~la~-~~~~vi~D~a~a~g~~~~~~---~~g~~~-~---d~~~~S~~~~K~l~~-g-~gG~~~~~~-------~~l~~~~  212 (377)
T 3ju7_A          150 ELEK-KGVPVVVDAAPGFGLMNGGM---HYGQDF-S---GMIIYSFHATKPFGI-G-EGGLIYSKN-------EEDIQRI  212 (377)
T ss_dssp             HHHH-TTCCBEEECTTCTTCEETTE---ETTTTC-S---SEEEEECBTTSSSCC-B-SCEEEEESC-------HHHHHHH
T ss_pred             HHHh-cCCEEEEECCCccCCeECCE---eccCCC-C---cEEEEECCCCCcCCC-C-CcEEEEECC-------HHHHHHH
Confidence            8899 999999999998533 2211   11 111 1   1455565  688764 4 578888764       3567766


Q ss_pred             Hhhhhc-------------cCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCce---E
Q 038416          251 KGCLNA-------------ASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGA---M  314 (387)
Q Consensus       251 ~~~~~~-------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g---~  314 (387)
                      +..+..             +...+.+..+.+...+     ..++.+.++.+++++.+.+.|++++++.....+..+   +
T Consensus       213 ~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l-----~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~  287 (377)
T 3ju7_A          213 KRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATM-----KKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVI  287 (377)
T ss_dssp             HHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHH-----HTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBC
T ss_pred             HHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcce
Confidence            655431             2233444333333333     335667777778888888888887654222122221   1


Q ss_pred             --EEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCc--cCC-------------------CCeEEEEee--CChHhH
Q 038416          315 --FVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRT--VGM-------------------KNWLRIAFA--AEPATL  369 (387)
Q Consensus       315 --~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~--~~~-------------------~~~~Ri~~~--~~~e~~  369 (387)
                        ++.+.++..     .+..++...| +++||.+..+..  ++.                   ...+|+.++  .+++++
T Consensus       288 ~~~~~~~~~~~-----~~~~~l~~~L-~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di  361 (377)
T 3ju7_A          288 QQFMPILCPEE-----VRNKQVIEDL-KKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIV  361 (377)
T ss_dssp             CSSEEEECCTT-----SCHHHHHHHH-HTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHH
T ss_pred             EEEEEEEeCCh-----hhHHHHHHHH-HHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHH
Confidence              223344321     1245565555 677999887651  110                   246888884  588999


Q ss_pred             HHHHHHHHHHHHHh
Q 038416          370 EDGLERIKAFCQRH  383 (387)
Q Consensus       370 ~~~~~~l~~~~~~~  383 (387)
                      +..++.|++++...
T Consensus       362 ~~v~~~l~~~~~~~  375 (377)
T 3ju7_A          362 EQIVICLGQKVVSA  375 (377)
T ss_dssp             HHHHHHHTC-----
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999998877653

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.95  E-value=5.1e-26  Score=217.42  Aligned_cols=333  Identities=11%  Similarity=0.048  Sum_probs=228.6

Q ss_pred             cHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCC-------CCCEEEcCChHHHHHHHHHhhcCC---
Q 038416           27 STVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLS-------PEDVYLTLGCSQAIEISLSVLARP---   96 (387)
Q Consensus        27 ~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~-------~~~i~~~~g~~~a~~~~~~~l~~~---   96 (387)
                      +..+.+++...+.. +...|....+..++++.+++++.+.+|.+..       ..++++|+|+|+|+..++.++..+   
T Consensus        87 ~~~~~~~~~~~~n~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~  165 (486)
T 1js3_A           87 PAMLADMLCGAIGC-IGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVR  165 (486)
T ss_dssp             HHHHHHHHHHHHCC-CCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCc-CccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhh
Confidence            34567777777643 3345655556789999999999888876532       356899999999999998776421   


Q ss_pred             ------CC--------e--EEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCce------EEEE
Q 038416           97 ------GA--------N--ILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTV------AIVI  154 (387)
Q Consensus        97 ------g~--------~--vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~v~l  154 (387)
                            ||        .  |+++.++|+++...++  ..|++++.++++  .++.+|+++|+++++++++      +|++
T Consensus       166 ~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~--~~G~~v~~v~~d--~~~~~d~~~L~~~i~~~~~~g~~p~~vv~  241 (486)
T 1js3_A          166 RLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGL--IGGVKLKAIPSD--GKFAMRASALQEALERDKAAGLIPFFVVA  241 (486)
T ss_dssp             HHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHH--HHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             hhhccCccchhcccCCCEEEEECCCCcHHHHHHHH--hCCCceEEeecC--CCCCCCHHHHHHHHHHHHhCCCCceEEEE
Confidence                  42        3  7789999999999999  899999999884  4678999999999977663      8899


Q ss_pred             eCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCCccEEEEecCcccccccccceEEEE
Q 038416          155 INPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVITLGSISKRWIVPGWRLGWLV  233 (387)
Q Consensus       155 ~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~  233 (387)
                      ++|+||||.+-   ++++|+++|+++|+++++|++|+.+.+....... +..+.. .. .++.+++|+++.+ +++|+++
T Consensus       242 ~~~~n~tG~~~---~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~-ad-si~~~~hK~~~~p-~~~G~l~  315 (486)
T 1js3_A          242 TLGTTSCCSFD---NLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEF-AD-SFNFNPHKWLLVN-FDCSAMW  315 (486)
T ss_dssp             EBSCTTTCCBC---CHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGG-CS-EEEECHHHHSSCC-SSCEEEE
T ss_pred             eCCCCCCCCCC---CHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccc-cC-eeEEchhhhcCCC-cceEEEE
Confidence            99999999984   4999999999999999999999976543222221 112211 12 4567899997665 7899999


Q ss_pred             eeCCCCcccchhHHHHHH---hhhh------------------ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHH
Q 038416          234 TSDPNGILQNSGFVDSIK---GCLN------------------AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETAD  292 (387)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~---~~~~------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  292 (387)
                      ++++..      +.+.+.   .+..                  .+.....+.++++...+   ..+++.++.++..++++
T Consensus       316 ~~~~~~------l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~---g~~g~~~~~~~~~~~a~  386 (486)
T 1js3_A          316 VKRRTD------LTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMY---GVKGLQAYIRKHVQLSH  386 (486)
T ss_dssp             ESCHHH------HHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred             EeCHHH------HHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHH---hHHHHHHHHHHHHHHHH
Confidence            976210      122221   0000                  00011223333333333   34678888999999999


Q ss_pred             HHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee---CChHhH
Q 038416          293 ICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA---AEPATL  369 (387)
Q Consensus       293 ~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~---~~~e~~  369 (387)
                      ++.+.|+++|+++++..|..+.+ .++++...    ....++...+.++ |+.+.++..+....++|+++.   ++++++
T Consensus       387 ~l~~~L~~~~~~~~~~~~~~~~v-~f~~~~~~----~~~~~l~~~L~~~-g~~~~~~~~~~~~~~lRi~~~~~~~t~~di  460 (486)
T 1js3_A          387 EFEAFVLQDPRFEVCAEVTLGLV-CFRLKGSD----GLNEALLERINSA-RKIHLVPCRLRGQFVLRFAICSRKVESGHV  460 (486)
T ss_dssp             HHHHHHHHCTTEEECSCCCSSEE-EEEESSCH----HHHHHHHHHHHHH-TSCBCEEEEETTEEEEEEECCCTTCCHHHH
T ss_pred             HHHHHHhcCCCeEEeCCCceeEE-EEEecChH----HHHHHHHHHHHhc-CCEEEEEEEECCEEEEEEEeCCCCCCHHHH
Confidence            99999999988886544554544 44553210    0134566666544 654433333444678999983   478999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 038416          370 EDGLERIKAFCQRHAK  385 (387)
Q Consensus       370 ~~~~~~l~~~~~~~~~  385 (387)
                      ++++++|+++++++.+
T Consensus       461 ~~~~~~l~~~~~~~~~  476 (486)
T 1js3_A          461 RLAWEHIRGLAAELLA  476 (486)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999877653

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.95  E-value=2.5e-25  Score=213.10  Aligned_cols=336  Identities=11%  Similarity=0.015  Sum_probs=228.3

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC------------
Q 038416           28 TVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR------------   95 (387)
Q Consensus        28 ~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~------------   95 (387)
                      ..+.+++..++.. ....|....+..++++.+++|+.+.+|.+.+.+.+++|+|+++++..++.++.+            
T Consensus       110 ~~~~e~l~~~~~~-~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~  188 (511)
T 3vp6_A          110 GLAGEWLTSTANT-NMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMA  188 (511)
T ss_dssp             HHHHHHHHHHHCC-CSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGG
T ss_pred             HHHHHHHHHHhcc-CCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcc
Confidence            3444666666654 344677767888999999999999888766667999999999999998887754            


Q ss_pred             --CCCeEEEcCCCCcchHHHhhccCCCc---eeeeeccCCCCCccCChhhHHHhhccC------ceEEEEeCCCCCcccc
Q 038416           96 --PGANILIPRPGYPLYEIHAAGSNNNL---EARHYDLLPEKRWEVDLDGVEALADEN------TVAIVIINPGNPCGNV  164 (387)
Q Consensus        96 --~g~~vl~~~p~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~nptG~~  164 (387)
                        +++.|+++.++|.++...++  ..|.   ++..++.+  .++.+|+++|+++++++      +++|++++++|++|.+
T Consensus       189 ~~~~~~v~~s~~~H~s~~~~~~--~~g~g~~~~~~v~~d--~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~v  264 (511)
T 3vp6_A          189 AVPKLVLFTSEQSHYSIKKAGA--ALGFGTDNVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAF  264 (511)
T ss_dssp             GSCCEEEEEETTSCTHHHHHHH--HTTSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCB
T ss_pred             cCCCeEEEECCCchHHHHHHHH--HcCCCCCcEEEeecC--CCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccc
Confidence              46789999999999999999  8888   78888875  35689999999999765      7889999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccc
Q 038416          165 FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQN  243 (387)
Q Consensus       165 ~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~  243 (387)
                      -+   +++|+++|++||+++++|++|+........... +....  .-.+++.+++|+++.+ ..+|+++++++.     
T Consensus       265 d~---l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~--~aDsv~~~~hK~l~~p-~g~g~l~~~~~~-----  333 (511)
T 3vp6_A          265 DP---IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIE--RANSVTWNPHKMMGVL-LQCSAILVKEKG-----  333 (511)
T ss_dssp             CC---HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGG--GCSEEEECTTSTTCCC-SCCEEEEESSTT-----
T ss_pred             cc---HHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCc--cCCEEEECcccccCCC-cCeEEEEEeCHH-----
Confidence            44   899999999999999999999975543222211 11111  1136678999997655 668999887632     


Q ss_pred             hhHHHHHHhh----hh-c-------------cC-CcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 038416          244 SGFVDSIKGC----LN-A-------------AS-HPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCI  304 (387)
Q Consensus       244 ~~~~~~~~~~----~~-~-------------~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  304 (387)
                        +.+.....    .. .             .. ...++....+..++.....+++.++.++..++++++.+.|+++|++
T Consensus       334 --~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~  411 (511)
T 3vp6_A          334 --ILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEF  411 (511)
T ss_dssp             --HHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTE
T ss_pred             --HHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence              33332111    00 0             00 0001112222233333345788999999999999999999999999


Q ss_pred             CCCC--CCCceEEEEEecCcccccCCC-----------cHHHHHHHHHHhcCeEEEcCCc-cCCCCeEEEEee---CChH
Q 038416          305 TCPV--KPQGAMFVMVKLNVSMLEDIG-----------DDLEFCLKLAKEESVIILPGRT-VGMKNWLRIAFA---AEPA  367 (387)
Q Consensus       305 ~~~~--~~~~g~~~~~~~~~~~~~~~~-----------~~~~~~~~ll~~~gi~v~~g~~-~~~~~~~Ri~~~---~~~e  367 (387)
                      +++.  .|..+.++|.-.+. ...+..           ...++...|.+ .|+.+..... .+..+++|+++.   ++.+
T Consensus       412 ~l~~~~~p~~~~v~f~~~p~-~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~  489 (511)
T 3vp6_A          412 EMVFNGEPEHTNVCFWYIPQ-SLRGVPDSPQRREKLHKVAPKIKALMME-SGTTMVGYQPQGDKANFFRMVISNPAATQS  489 (511)
T ss_dssp             EESSSSCCSSSCEEEEECCG-GGSSCCCCHHHHHHHHHHHHHHHHHHHH-HTSCEEEEEEETTEEEEEEECCCCTTCCHH
T ss_pred             EEEecCCCCeEEEEEEEeCc-cccccccchhHHHHHHHHHHHHHHHHHh-cCCEEEEEEEeCCceEEEEEEecCCCCCHH
Confidence            8664  35555544432222 111100           01245555544 4754443111 111347999983   4789


Q ss_pred             hHHHHHHHHHHHHHHh
Q 038416          368 TLEDGLERIKAFCQRH  383 (387)
Q Consensus       368 ~~~~~~~~l~~~~~~~  383 (387)
                      +++.+++.|++.-+++
T Consensus       490 di~~ll~~i~~~~~~~  505 (511)
T 3vp6_A          490 DIDFLIEEIERLGQDL  505 (511)
T ss_dssp             HHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999998876553

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.95  E-value=3.1e-25  Score=206.37  Aligned_cols=312  Identities=13%  Similarity=0.116  Sum_probs=212.0

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCC--cHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh-cCCCCeEEE
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLG--VPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL-ARPGANILI  102 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~--~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~g~~vl~  102 (387)
                      .++.+.+++.+.+..    +|.+..|  ..++|+.++++++        .+++++++|+++++..++.++ +++||+|++
T Consensus        10 ~~~~v~~a~~~~~~~----~~~~~~g~~~~~l~~~la~~~~--------~~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~   77 (394)
T 1o69_A           10 MGGNELKYIEEVFKS----NYIAPLGEFVNRFEQSVKDYSK--------SENALALNSATAALHLALRVAGVKQDDIVLA   77 (394)
T ss_dssp             --CCHHHHHHHHHHH----TTTSCTTHHHHHHHHHHHHHHC--------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             CCHHHHHHHHHHHHc----CCccCCChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHcCCCCCCEEEE
Confidence            456788888888865    2444346  8899999999993        278999999999999999999 899999999


Q ss_pred             cCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhcc---CceEEEEeCCCCCccccCCHHHHHHHHHHHHh
Q 038416          103 PRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE---NTVAIVIINPGNPCGNVFSYQHLQKIARTARN  179 (387)
Q Consensus       103 ~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~  179 (387)
                      +.|+|+++...+.  ..|.+++.++++  .++.+|++++++++++   ++++|++++   |+|...+   +++|.++|++
T Consensus        78 ~~~~~~~~~~~~~--~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~---l~~i~~l~~~  147 (394)
T 1o69_A           78 SSFTFIASVAPIC--YLKAKPVFIDCD--ETYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAK---MDEIVEICKE  147 (394)
T ss_dssp             ESSSCGGGTHHHH--HTTCEEEEECBC--TTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCC---HHHHHHHHHH
T ss_pred             CCCccHHHHHHHH--HcCCEEEEEEeC--CCCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhh---HHHHHHHHHH
Confidence            9999999999999  899999999885  4567899999999876   688898886   7897754   8899999999


Q ss_pred             cCcEEeeccccc-ccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhhccC
Q 038416          180 LGIIVIADEVYN-HLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAAS  258 (387)
Q Consensus       180 ~~~~li~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (387)
                      +|+++|+|++|+ ++.+.+.....   +.  +  +.+.|+||..+++|.++||+++++       +++++.++.......
T Consensus       148 ~~~~li~Dea~~~g~~~~~~~~~~---~~--~--~~~~s~s~~K~l~~~~~G~~~~~~-------~~l~~~l~~~~~~~~  213 (394)
T 1o69_A          148 NDIVLIEDAAEALGSFYKNKALGT---FG--E--FGVYSYNGNKIITTSGGGMLIGKN-------KEKIEKARFYSTQAR  213 (394)
T ss_dssp             TTCEEEEECTTCTTCEETTEETTS---SS--S--EEEEECCTTSSSCCSSCEEEEESC-------HHHHHHHHHHTBTCC
T ss_pred             cCCEEEEECcCcccceeCCccccc---cc--C--cEEEEEeCCccCCCCCceEEEECC-------HHHHHHHHHHHHhcc
Confidence            999999999999 55554322111   11  1  445566444445677899999953       257777765432110


Q ss_pred             -C--------------cchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----ceE-EEEE
Q 038416          259 -H--------------PVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ----GAM-FVMV  318 (387)
Q Consensus       259 -~--------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~g~-~~~~  318 (387)
                       .              .++....++...+     +++++..++++++++++.+.|+++  +.+. .+.    .++ ++++
T Consensus       214 ~~~~~~~~~~~g~~~~~~~~~aa~~l~~l-----~~l~~~~~~~~~~~~~l~~~L~~~--~~~~-~~~~~~~~~~~~~~i  285 (394)
T 1o69_A          214 ENCLHYEHLDYGYNYRLSNVLGAIGVAQM-----EVLEQRVLKKREIYEWYKEFLGEY--FSFL-DELENSRSNRWLSTA  285 (394)
T ss_dssp             CSSSSCCCSSCCCBCBCCHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHTTT--EECC-CCCTTEECCCSSEEE
T ss_pred             ccCccccccccCcccCcCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccc--cccc-CCCCCCcceeEEEEE
Confidence             0              1112222221112     235667788888899999988875  4422 221    222 2555


Q ss_pred             ecCccc-------------ccC---CCcHHHHHHHHHHhcCeEEEcCCccC-----CC---------------CeEEEEe
Q 038416          319 KLNVSM-------------LED---IGDDLEFCLKLAKEESVIILPGRTVG-----MK---------------NWLRIAF  362 (387)
Q Consensus       319 ~~~~~~-------------~~~---~~~~~~~~~~ll~~~gi~v~~g~~~~-----~~---------------~~~Ri~~  362 (387)
                      .++...             ..+   ..+..++...| .++||.+.+|..+.     ..               ..+|+..
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  364 (394)
T 1o69_A          286 LINFDKNELNACQKDINISQKNITLHPKISKLIEDL-KNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPS  364 (394)
T ss_dssp             EESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHH-HHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECC
T ss_pred             EecchhhccccccccccccccccccccCHHHHHHHH-HHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccC
Confidence            665210             000   00234555555 66799999884220     01               2344444


Q ss_pred             --eCChHhHHHHHHHHHHHHHH
Q 038416          363 --AAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       363 --~~~~e~~~~~~~~l~~~~~~  382 (387)
                        ..+++|++.+++.|+++++.
T Consensus       365 ~~~~t~edi~~~~~~l~~~~~~  386 (394)
T 1o69_A          365 GTAMSKDDVYEISKLILKSIKA  386 (394)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHHHHHHHHHhc
Confidence              25899999999999887643

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.94  E-value=1.5e-25  Score=207.93  Aligned_cols=285  Identities=15%  Similarity=0.109  Sum_probs=197.7

Q ss_pred             CcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhh---ccCCCceeeeec
Q 038416           51 GVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAA---GSNNNLEARHYD  127 (387)
Q Consensus        51 ~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~---~~~~g~~~~~~~  127 (387)
                      ...+|++.++++..        .+++++++|+++|+.. +..++++||+|+++.|+|++....+.   ....|.++..++
T Consensus        68 ~~~~l~~~la~l~g--------~~~~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~  138 (400)
T 3nmy_A           68 TRFAYERCVAALEG--------GTRAFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVD  138 (400)
T ss_dssp             HHHHHHHHHHHHHT--------CSEEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEEC
T ss_pred             HHHHHHHHHHHHhC--------CCCEEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEEC
Confidence            45778888888772        3467777888999998 56778999999999999996555443   003588888887


Q ss_pred             cCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccC
Q 038416          128 LLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFG  207 (387)
Q Consensus       128 ~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~  207 (387)
                      ..       |++++++++++++++|++++|+||+|.+++   +++|.++|+++|+++|+|++|+...+.    .++. + 
T Consensus       139 ~~-------d~~~l~~~i~~~~~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~----~~~~-~-  202 (400)
T 3nmy_A          139 LT-------DPAAFKAAIRADTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQ----RPLS-L-  202 (400)
T ss_dssp             TT-------SHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHC----CGGG-G-
T ss_pred             CC-------CHHHHHHHhccCCCEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccC----Chhh-c-
Confidence            52       789999999999999999999999999987   889999999999999999999853322    1111 2 


Q ss_pred             CCccEEEEecCcccccccccceEE--EEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHH
Q 038416          208 SIVPVITLGSISKRWIVPGWRLGW--LVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKII  284 (387)
Q Consensus       208 ~~~~~~~i~s~sK~~~~~g~r~G~--i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  284 (387)
                        +..+++.|++|.++.+|.++|.  ++..+       +++.+.++.... .+...++...+.+...++.     +..+.
T Consensus       203 --g~div~~S~sK~l~g~g~~~gG~~vv~~~-------~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~-----l~~r~  268 (400)
T 3nmy_A          203 --GADLVVHSATKYLNGHSDMVGGIAVVGDN-------AELAEQMAFLQNSIGGVQGPFDSFLALRGLKT-----LPLRM  268 (400)
T ss_dssp             --TCSEEEEETTTTTTCSSSCCCEEEEECSC-------HHHHHHHHHHHHHHCCBCCHHHHHHHHHHHTT-----HHHHH
T ss_pred             --CCcEEEecCccccCCCCCcceeEEEEeCC-------HHHHHHHHHHHHhcCCCCCHHHHHHHHHhHhH-----HHHHH
Confidence              2348899999999888877766  44432       257777766543 4455666666665555554     55667


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCC----------------ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEc
Q 038416          285 GLLKETADICYERIKEIPCITCPVKPQ----------------GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILP  348 (387)
Q Consensus       285 ~~~~~~~~~~~~~l~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~  348 (387)
                      ++..++++.+.+.|++.|.+..+..|.                .|.++++.++...    .....++..+ +-.++.+..
T Consensus       269 ~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~----~~~~~~~~~l-~~~~~~~s~  343 (400)
T 3nmy_A          269 RAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGF----DAAKRFCEKT-ELFTLAESL  343 (400)
T ss_dssp             HHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH----HHHHHHHHHC-SSSEECSCC
T ss_pred             HHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcH----HHHHHHHHcC-CcceEecCC
Confidence            778888888989998877655443432                3667787775310    0122333332 333333344


Q ss_pred             CCccC-----------------------CCCeEEEEeeCChHhHHHHHHHHHHHHH
Q 038416          349 GRTVG-----------------------MKNWLRIAFAAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       349 g~~~~-----------------------~~~~~Ri~~~~~~e~~~~~~~~l~~~~~  381 (387)
                      |..+.                       .++.+|+|++.  |+.+.+++.|.++++
T Consensus       344 G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl--e~~~dli~dl~~al~  397 (400)
T 3nmy_A          344 GGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGI--EDLGDLRGDLERALV  397 (400)
T ss_dssp             CSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHHHHC
T ss_pred             CCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCc--CCHHHHHHHHHHHHh
Confidence            43221                       14689999988  455666677777765

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.94  E-value=4.3e-25  Score=208.44  Aligned_cols=334  Identities=15%  Similarity=0.056  Sum_probs=207.1

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCC------CCCcHHHHHHHHHHHhhcCCCCCCCCC---EEEcCChHHHHHHHHHhhcC
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSP------TLGVPSARRGIADYLNRDLPYKLSPED---VYLTLGCSQAIEISLSVLAR   95 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~------~~~~~~lr~~ia~~~~~~~~~~~~~~~---i~~~~g~~~a~~~~~~~l~~   95 (387)
                      ++++.|.+++.+.+.+....+|+.      .....++++...+++.+.+|  .+.++   .++++|+++|+..++.++++
T Consensus        65 ~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g--~~~~~~~~~v~~~sGt~An~~al~al~~  142 (490)
T 2a7v_A           65 FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFD--LDPAQWGVNVQPYSGSPANLAVYTALLQ  142 (490)
T ss_dssp             CCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTT--CCTTTEEEECCCSSHHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcC--CCcccCceEEeCCchHHHHHHHHHHHcC
Confidence            479999999999887643223332      11234666444444444443  34432   35566889999999999999


Q ss_pred             CCCeEEEcCCCCcchHH--------HhhccCCCcee--eeeccCCCCCccCChhhHHHhhc-cCceEEEEeCCCCCcccc
Q 038416           96 PGANILIPRPGYPLYEI--------HAAGSNNNLEA--RHYDLLPEKRWEVDLDGVEALAD-ENTVAIVIINPGNPCGNV  164 (387)
Q Consensus        96 ~g~~vl~~~p~~~~~~~--------~~~~~~~g~~~--~~~~~~~~~~~~~~~~~l~~~~~-~~~~~v~l~~p~nptG~~  164 (387)
                      +||+|++..+.|.++..        .+.  ..|..+  ..+++++ .++.+|++++++++. .++++|+++.++||+  .
T Consensus       143 pGD~Vl~~~~~h~g~l~h~~~~~~~~i~--~~g~~~~~~~~~vd~-~~~~iD~d~le~~l~~~~~klIi~~~s~~~~--~  217 (490)
T 2a7v_A          143 PHDRIMGLDLPDGGHLTHGYMSDVKRIS--ATSIFFESMPYKLNP-KTGLIDYNQLALTARLFRPRLIIAGTSAYAR--L  217 (490)
T ss_dssp             SCEECCC---------------------------------CCBCT-TTCSBCHHHHHHHHHHHCCSEEEECCSSCCS--C
T ss_pred             CCCEecccCccccccccchhhhcchhHH--HcCCeEEEEeccccc-ccCCcCHHHHHHHHhhcCCcEEEEcCCCCCC--c
Confidence            99999999998865321        223  345433  3444433 346899999999885 468888888888875  3


Q ss_pred             CCHHHHHHHHHHHHhcCcEEeeccccc-ccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccc
Q 038416          165 FSYQHLQKIARTARNLGIIVIADEVYN-HLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQN  243 (387)
Q Consensus       165 ~~~~~~~~l~~~~~~~~~~li~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~  243 (387)
                      .+   +++|.++|+++|+++++|++|. ++...+....++.  ..   .+++.|+||++  .|.+.|++++++.. ..-+
T Consensus       218 ~d---l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~--~a---Div~~S~hK~l--~Gp~GG~i~~~~~~-~~~~  286 (490)
T 2a7v_A          218 ID---YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--HA---DIVTTTTHKTL--RGARSGLIFYRKGV-KAVD  286 (490)
T ss_dssp             CC---HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG--TC---SEEEEESSGGG--CSCSCEEEEEECSE-EEEE
T ss_pred             cc---HHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC--CC---CEEEECCcccC--ccccchheeeccch-hccc
Confidence            33   8899999999999999999976 4444443333432  12   27889999985  46678999998620 0000


Q ss_pred             h--------hHHHHHHhhhh--ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCce
Q 038416          244 S--------GFVDSIKGCLN--AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGA  313 (387)
Q Consensus       244 ~--------~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g  313 (387)
                      +        ++.+++++...  ..++++.....++..++....+..+++..+++.++++++.+.|++. |+.++..+...
T Consensus       287 ~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~-G~~v~~~~t~t  365 (490)
T 2a7v_A          287 PKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDN  365 (490)
T ss_dssp             TTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSS
T ss_pred             ccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc-CcEEecCCCCC
Confidence            0        24555554432  1234555555555555554322345778889999999999999987 77754323445


Q ss_pred             EEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccC-----CCCeEEEEe------eCChHhHHHHHHHHHHHHHH
Q 038416          314 MFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG-----MKNWLRIAF------AAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~-----~~~~~Ri~~------~~~~e~~~~~~~~l~~~~~~  382 (387)
                      +++|+.+.....    +..+ +..+|++.||.+..+..++     .+..+||+.      +.++++++++++.|.++++.
T Consensus       366 ~lv~vdl~~~g~----~~~~-~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~  440 (490)
T 2a7v_A          366 HLVLVDLRPKGL----DGAR-AERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNI  440 (490)
T ss_dssp             SEEEEECTTTTC----CHHH-HHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCC----CHHH-HHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHHh
Confidence            678888754221    3444 4555678899998643332     246899987      24789999999999888764

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.94  E-value=9.4e-25  Score=207.38  Aligned_cols=342  Identities=10%  Similarity=0.021  Sum_probs=228.4

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCC-------CCEEEcCChHHHHHHHHHhhcC-----
Q 038416           28 TVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSP-------EDVYLTLGCSQAIEISLSVLAR-----   95 (387)
Q Consensus        28 ~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~-------~~i~~~~g~~~a~~~~~~~l~~-----   95 (387)
                      ..+.+.+...+.. +...|....+..++++.+++|+.+.+|.+...       ...++|+|+|+++..++.+...     
T Consensus        88 ~~~~~~l~~~~n~-~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~  166 (475)
T 3k40_A           88 AIVADMLSGAIAC-IGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKE  166 (475)
T ss_dssp             HHHHHHHHHHHCC-CSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCc-cccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHH
Confidence            3444555555543 34467766778899999999999988765321       3688999999999888877631     


Q ss_pred             --------------CCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccC------ceEEEEe
Q 038416           96 --------------PGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADEN------TVAIVII  155 (387)
Q Consensus        96 --------------~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~v~l~  155 (387)
                                    +++.|+++.++|.++...+.  ..|.+++.++++  .++ +|+++|+++++++      +.+|+++
T Consensus       167 ~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~--~~g~~~~~v~~d--~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~  241 (475)
T 3k40_A          167 VKELHPEWDEHTILGKLVGYCSDQAHSSVERAGL--LGGVKLRSVQSE--NHR-MRGAALEKAIEQDVAEGLIPFYAVVT  241 (475)
T ss_dssp             HHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHH--HHTCEEEEECCB--TTB-CCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             hhccCcccccccccCCeEEEECCCchHHHHHHHH--HcCCceEEEECC--CCC-cCHHHHHHHHHHHHHCCCccEEEEEE
Confidence                          23579999999999999999  899999999885  345 9999999998764      5678888


Q ss_pred             CCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCCccEEEEecCcccccccccceEEEEe
Q 038416          156 NPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVITLGSISKRWIVPGWRLGWLVT  234 (387)
Q Consensus       156 ~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~  234 (387)
                      .++|++|.+-+   +++|+++|++||+++++|++|+...+....... +..+.  .-..+..+++|+++.| ..+|++++
T Consensus       242 ~~~t~~G~~~~---l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~--~~Ds~~~~~hK~l~~p-~g~g~l~~  315 (475)
T 3k40_A          242 LGTTNSCAFDY---LDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIE--SADSFNFNPHKWMLVN-FDCSAMWL  315 (475)
T ss_dssp             BSCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGG--GCSEEEECHHHHSSCC-SSCEEEEE
T ss_pred             ecCCCCcCcCC---HHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcc--cCCEEEECchhccCCC-CceEEEEE
Confidence            99999999955   899999999999999999999875432211111 11111  1126678899986544 55888888


Q ss_pred             eCCCCccc----chhHHHHH-----HhhhhccC-CcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 038416          235 SDPNGILQ----NSGFVDSI-----KGCLNAAS-HPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCI  304 (387)
Q Consensus       235 ~~~~~~~~----~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  304 (387)
                      +++..+..    .+.++..-     ........ ..-++....+..++.......+.++.++..++++++.+.|+++|++
T Consensus       316 ~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~  395 (475)
T 3k40_A          316 KDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRF  395 (475)
T ss_dssp             SSGGGC---------------------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTE
T ss_pred             eCHHHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence            76432110    00011000     00000000 1111122222233333345678889999999999999999999999


Q ss_pred             CCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee---CChHhHHHHHHHHHHHHH
Q 038416          305 TCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA---AEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       305 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~---~~~e~~~~~~~~l~~~~~  381 (387)
                      +++..+ ....++++++...    ....++...+.++.++.+.|+... ...++|+++.   +++++++.++++|+++.+
T Consensus       396 ~l~~~~-~~~iv~f~~~~~~----~~~~~l~~~L~~~g~~~~~~~~~~-g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~  469 (475)
T 3k40_A          396 ELAAEI-NMGLVCFRLKGSN----ERNEALLKRINGRGHIHLVPAKIK-DVYFLRMAICSRFTQSEDMEYSWKEVSAAAD  469 (475)
T ss_dssp             EESSCC-BTTEEEEEESSCH----HHHHHHHHHHHHHTSCBCEEEEET-TEEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEecCC-ceEEEEEEeCCch----HHHHHHHHHHHhCCcEEEEeeEEC-CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            866434 4445566664211    124567777766644455554332 3578999984   478999999999999998


Q ss_pred             HhhhcC
Q 038416          382 RHAKKQ  387 (387)
Q Consensus       382 ~~~~~~  387 (387)
                      ++.+.|
T Consensus       470 ~~~~~~  475 (475)
T 3k40_A          470 EMEQEQ  475 (475)
T ss_dssp             HHHTCC
T ss_pred             HHhccC
Confidence            887653

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.94  E-value=6.6e-24  Score=203.99  Aligned_cols=334  Identities=12%  Similarity=0.040  Sum_probs=218.3

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc-------C-CC
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA-------R-PG   97 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-------~-~g   97 (387)
                      .+..+...+.....+.+...|....+..++++.+.+++.+.+|.  +.+++++|+|+|+++..++.++.       + +|
T Consensus       120 ~~~~~~~~~l~~~~n~~~~~~~~s~~~~~le~~~~~~la~l~g~--~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G  197 (515)
T 2jis_A          120 DPHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGW--SSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRG  197 (515)
T ss_dssp             CHHHHHHHHHHHHHCCCTTCTTTCHHHHHHHHHHHHHHHHHHTC--SSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHC
T ss_pred             CHHHHHHHHHHHHhccCCCchhhchHHHHHHHHHHHHHHHHhCC--CCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcC
Confidence            34444443333333333335555455566677766666665554  36799999999999999888863       2 56


Q ss_pred             C------eEEEcCCCCcchHHHhhccCCCc---eeeeeccCCCCCccCChhhHHHhhcc------CceEEEEeCCCCCcc
Q 038416           98 A------NILIPRPGYPLYEIHAAGSNNNL---EARHYDLLPEKRWEVDLDGVEALADE------NTVAIVIINPGNPCG  162 (387)
Q Consensus        98 ~------~vl~~~p~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG  162 (387)
                      +      .|+++.++|+++...+.  ..|.   +++.+|++  .++.+|+++|++++++      ++++|++++|+|+||
T Consensus       198 ~~~~~~~~vl~s~~~h~s~~~~~~--~~g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG  273 (515)
T 2jis_A          198 LRTLPPLALFTSKECHYSIQKGAA--FLGLGTDSVRVVKAD--ERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLG  273 (515)
T ss_dssp             GGGSCCEEEEEETTSCTHHHHHHH--HTTSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTC
T ss_pred             ccccCCeEEEECCCccHHHHHHHH--HcCCCCCcEEEEecC--CCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCC
Confidence            5      88999999999998888  7777   78888874  3567999999999875      478999999999999


Q ss_pred             ccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCCccEEEEecCcccccccccceEEEEeeCCCCcc
Q 038416          163 NVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGIL  241 (387)
Q Consensus       163 ~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~  241 (387)
                      .+.+   +++|+++|+++|+++|+|++|+.+......+.. +..+.  ...+++.|++|+++.| .++|+++++++.   
T Consensus       274 ~i~~---l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~--~aD~v~~s~hK~l~~p-~g~G~l~~~~~~---  344 (515)
T 2jis_A          274 AFDP---LEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQ--RADSVAWNPHKLLAAG-LQCSALLLQDTS---  344 (515)
T ss_dssp             CBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGG--GCSEEEECTTSTTCCC-SCCEEEEESCCS---
T ss_pred             CccC---HHHHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCc--cCCEEEECcccccCCC-CCeeEEEEeChH---
Confidence            9976   889999999999999999999987654332221 22221  2237788999997644 568999998731   


Q ss_pred             cchhHHHHHH----hhh-h-----------------ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhh
Q 038416          242 QNSGFVDSIK----GCL-N-----------------AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIK  299 (387)
Q Consensus       242 ~~~~~~~~~~----~~~-~-----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  299 (387)
                         ++.++..    .+. .                 .+.......++++...+   ....+.+..++..++++++.+.|+
T Consensus       345 ---~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~l---g~~g~~~~~~~~~~~a~~l~~~L~  418 (515)
T 2jis_A          345 ---NLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQ---GDQGLERRIDQAFVLARYLVEEMK  418 (515)
T ss_dssp             ---CHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHh
Confidence               1333211    110 0                 00001122333333333   346678888999999999999999


Q ss_pred             cCCCCCCCCCCCceEEEEEecCcccccC---CCcH-H-------HHHHHHHHhcCeEEEcCCc-cCCCCeEEEEee---C
Q 038416          300 EIPCITCPVKPQGAMFVMVKLNVSMLED---IGDD-L-------EFCLKLAKEESVIILPGRT-VGMKNWLRIAFA---A  364 (387)
Q Consensus       300 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~-~-------~~~~~ll~~~gi~v~~g~~-~~~~~~~Ri~~~---~  364 (387)
                      ++|+++++..|..+.++|...+.. ..+   ..+. .       .+...+ .+.|+....... .+..+++|++++   +
T Consensus       419 ~~~g~~~~~~~~~~~v~f~~~p~~-~~~~~~~~~~~~~l~~~~~~l~~~l-~~~G~~~~~~~~~~~~~~~lRis~~~~~~  496 (515)
T 2jis_A          419 KREGFELVMEPEFVNVCFWFVPPS-LRGKQESPDYHERLSKVAPVLKERM-VKEGSMMIGYQPHGTRGNFFRVVVANSAL  496 (515)
T ss_dssp             TSTTEEESSCCSSSEEEEEECCGG-GTTCTTSTTHHHHHHTHHHHHHHHH-HHHTSCEEEEEEETTEEEEEEEECCCTTC
T ss_pred             cCCCEEEeCCCCeeEEEEEEeCcc-ccccccchhHHHHHHHHHHHHHHHH-HhcCCEEEEEEEECCceEEEEEEeCCCCC
Confidence            998888664455555544333321 100   0010 1       133344 455765432111 112468999994   6


Q ss_pred             ChHhHHHHHHHHHHHHHH
Q 038416          365 EPATLEDGLERIKAFCQR  382 (387)
Q Consensus       365 ~~e~~~~~~~~l~~~~~~  382 (387)
                      ++++++.+++.|++++++
T Consensus       497 t~edid~~~~~l~~~~~~  514 (515)
T 2jis_A          497 TCADMDFLLNELERLGQD  514 (515)
T ss_dssp             CHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHhh
Confidence            899999999999887654

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.94  E-value=1.3e-24  Score=206.95  Aligned_cols=332  Identities=11%  Similarity=0.055  Sum_probs=229.6

Q ss_pred             cHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCC--------CCEEEcCChHHHHHHHHHhhcC---
Q 038416           27 STVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSP--------EDVYLTLGCSQAIEISLSVLAR---   95 (387)
Q Consensus        27 ~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~--------~~i~~~~g~~~a~~~~~~~l~~---   95 (387)
                      +..+.+.+..++.. +...|....+..++++.+++|+.+.+|.+...        ...++|+|+|+++..++.+...   
T Consensus        92 ~~~~~~~~~~~~n~-~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~  170 (481)
T 4e1o_A           92 PSLLGDMLADAINC-LGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKI  170 (481)
T ss_dssp             HHHHHHHHHHHHCC-CCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCc-ccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHH
Confidence            44555566666654 34567777788999999999999988765322        3678999999999988887642   


Q ss_pred             ----------------CCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccC------ceEEE
Q 038416           96 ----------------PGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADEN------TVAIV  153 (387)
Q Consensus        96 ----------------~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~v~  153 (387)
                                      +++.|+++.++|.++...+.  ..|.+++.++++  .++.+|+++|+++++++      +.+|+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~--~~g~~~~~v~~~--~~~~~d~~~Le~~i~~~~~~g~~~~~vv  246 (481)
T 4e1o_A          171 LEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGL--ISLVKMKFLPVD--DNFSLRGEALQKAIEEDKQRGLVPVFVC  246 (481)
T ss_dssp             HHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHH--HHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHhhhcCcccccccccCCeEEEEcCcchHHHHHHHH--hCCCceEEEEcC--CCCcCCHHHHHHHHHHHHhCCCCcEEEE
Confidence                            46789999999999999998  889999999874  46689999999998754      66788


Q ss_pred             EeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCCccEEEEecCcccccccccceEEE
Q 038416          154 IINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVITLGSISKRWIVPGWRLGWL  232 (387)
Q Consensus       154 l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i  232 (387)
                      ++.++|++|.+-+   +++|+++|++||+++++|++|+...+....... +..+.  .-..+..+.+|+++.| ..+|++
T Consensus       247 ~~~~~t~~G~id~---l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~--~aDsi~~~~hK~l~~p-~g~g~l  320 (481)
T 4e1o_A          247 ATLGTTGVCAFDC---LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIE--YADSFTFNPSKWMMVH-FDCTGF  320 (481)
T ss_dssp             EEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGG--GCSEEEECHHHHSSCC-SSCEEE
T ss_pred             EecCCCCCcCcCC---HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcc--cCCEEEEChHHhcCCC-CceEEE
Confidence            8899999999855   899999999999999999999875432221111 11111  1125667899997655 557888


Q ss_pred             EeeCCCCcccchhHHHHHHh----hhh----------------ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHH
Q 038416          233 VTSDPNGILQNSGFVDSIKG----CLN----------------AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETAD  292 (387)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~----~~~----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  292 (387)
                      +++++.       .......    +..                .+.....+.++++...   ...+.+.++.++..++++
T Consensus       321 ~~~~~~-------~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~---~g~~g~~~~~~~~~~~a~  390 (481)
T 4e1o_A          321 WVKDKY-------KLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRS---FGVKNLQAHVRHGTEMAK  390 (481)
T ss_dssp             EESBHH-------HHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred             EEeCHH-------HHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHH---hHHHHHHHHHHHHHHHHH
Confidence            876521       2111100    000                0000112233333333   335678889999999999


Q ss_pred             HHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee---CChHhH
Q 038416          293 ICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA---AEPATL  369 (387)
Q Consensus       293 ~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~---~~~e~~  369 (387)
                      ++.+.|+++|++++. .+...++++++++...    ....++...+.++..+.+.|+. .....++|+++.   ++++++
T Consensus       391 ~l~~~L~~~~g~~~~-~~~~~~~v~f~~~~~~----~~~~~l~~~L~~~g~~~~~~~~-~~g~~~lR~~~~~~~tt~~di  464 (481)
T 4e1o_A          391 YFESLVRNDPSFEIP-AKRHLGLVVFRLKGPN----SLTENVLKEIAKAGRLFLIPAT-IQDKLIIRFTVTSQFTTRDDI  464 (481)
T ss_dssp             HHHHHHHTCTTEECC-SCCCSSEEEEEESSCH----HHHHHHHHHHHHHCSSBCEEEE-ETTEEEEEEECCCTTCCHHHH
T ss_pred             HHHHHHhcCCCeEEe-cCCceeEEEEEeCCch----HHHHHHHHHHHhCCeEEEEeeE-ECCEEEEEEEeCCCCCCHHHH
Confidence            999999999999965 4444556676664311    1245666776555335555533 233468999984   378999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 038416          370 EDGLERIKAFCQRHAK  385 (387)
Q Consensus       370 ~~~~~~l~~~~~~~~~  385 (387)
                      ++++++|+++++++.+
T Consensus       465 ~~~~~~i~~~~~~l~~  480 (481)
T 4e1o_A          465 LRDWNLIRDAATLILS  480 (481)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999887653

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.93  E-value=5.4e-24  Score=199.40  Aligned_cols=291  Identities=18%  Similarity=0.122  Sum_probs=192.4

Q ss_pred             CcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHh----hccCCCceeeee
Q 038416           51 GVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHA----AGSNNNLEARHY  126 (387)
Q Consensus        51 ~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~----~~~~~g~~~~~~  126 (387)
                      ...++|+.++++++      .  ++.++++++++|+..++.+++++||+|+++.++|+++...+    .  ..|.++..+
T Consensus        59 ~~~~l~~~la~~~g------~--~~~v~~~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~--~~g~~~~~~  128 (421)
T 2ctz_A           59 TVDVLEKRLAALEG------G--KAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLK--RLGIEVRFT  128 (421)
T ss_dssp             HHHHHHHHHHHHHT------C--SEEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHH--HTTCEEEEC
T ss_pred             HHHHHHHHHHHHhC------C--CceEEecCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHH--HcCCEEEEE
Confidence            45789999999983      2  23455556699999999999999999999999999876654    6  689888887


Q ss_pred             -ccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccc
Q 038416          127 -DLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV  205 (387)
Q Consensus       127 -~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~  205 (387)
                       +.+       |++++++++++++++|++++|+||+|.+++   +++|.++|+++|+++|+|++|..+.+.+.   ++ .
T Consensus       129 ~~~~-------d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~~~~g~~~~---~~-~  194 (421)
T 2ctz_A          129 SREE-------RPEEFLALTDEKTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGGYLLR---PL-A  194 (421)
T ss_dssp             CTTC-------CHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGTSCC---GG-G
T ss_pred             CCCC-------CHHHHHHhhccCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcccccccCC---cc-c
Confidence             642       789999999989999999999999999988   88999999999999999999932323222   22 2


Q ss_pred             cCCCccEEEEecCcccccccccceEEEEeeC-CCCc-cc-chhH---------------------HHHHHh--hhhccCC
Q 038416          206 FGSIVPVITLGSISKRWIVPGWRLGWLVTSD-PNGI-LQ-NSGF---------------------VDSIKG--CLNAASH  259 (387)
Q Consensus       206 ~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~-~~~~-~~-~~~~---------------------~~~~~~--~~~~~~~  259 (387)
                      ..   ..+++.|++|.++.+|.++|++++.+ ...+ .. .+.+                     ....+.  ....+..
T Consensus       195 ~~---~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~  271 (421)
T 2ctz_A          195 WG---AALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQA  271 (421)
T ss_dssp             GT---CSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCC
T ss_pred             cC---CeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCC
Confidence            22   23889999999999999999988863 1111 00 0001                     111110  0112234


Q ss_pred             cchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC-----------------CceEEEEEecCc
Q 038416          260 PVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKP-----------------QGAMFVMVKLNV  322 (387)
Q Consensus       260 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----------------~~g~~~~~~~~~  322 (387)
                      .++...+++...++.     +..+.++..++++.+.+.|+++|++..+..|                 ..|.++.+.+..
T Consensus       272 ~~~~~a~~~~~~l~~-----l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~  346 (421)
T 2ctz_A          272 LGPFEAWVVLLGMET-----LSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKG  346 (421)
T ss_dssp             CCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETT
T ss_pred             CCHHHHHHHHcCcch-----HHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeCC
Confidence            455544444444443     4455666668888999999988877643222                 234455666642


Q ss_pred             ccccCCCcHHHHHHHHHHhcCeEEEcCCcc----------------------CC-CCeEEEEeeCChHhHHHHHHHHHHH
Q 038416          323 SMLEDIGDDLEFCLKLAKEESVIILPGRTV----------------------GM-KNWLRIAFAAEPATLEDGLERIKAF  379 (387)
Q Consensus       323 ~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~----------------------~~-~~~~Ri~~~~~~e~~~~~~~~l~~~  379 (387)
                      ..    .+...++..+ +..++.+..|...                      +. ++.+|+|++.  |+++++++.|+++
T Consensus       347 ~~----~~~~~~~~~l-~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g~--e~~~~li~~l~~a  419 (421)
T 2ctz_A          347 GY----EAAKRFISRL-KLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGL--EHVEDLKAELKEA  419 (421)
T ss_dssp             HH----HHHHHHHHTC-SSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHHH
T ss_pred             CH----HHHHHHHHhC-CcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeCC--CCHHHHHHHHHHH
Confidence            10    0112232222 2234344444211                      11 3789999876  6888888888776


Q ss_pred             H
Q 038416          380 C  380 (387)
Q Consensus       380 ~  380 (387)
                      +
T Consensus       420 l  420 (421)
T 2ctz_A          420 L  420 (421)
T ss_dssp             T
T ss_pred             h
Confidence            5

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.93  E-value=1.1e-25  Score=212.13  Aligned_cols=286  Identities=10%  Similarity=0.031  Sum_probs=186.7

Q ss_pred             CcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCC
Q 038416           51 GVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLP  130 (387)
Q Consensus        51 ~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~  130 (387)
                      ...++++.+++ +    +  .+ +++++++|+++++..++.+++++||+|+++.|+|.++...+.  ..|.+++.++...
T Consensus        58 ~~~~~~~~la~-~----g--~~-~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~--~~G~~~~~v~~~~  127 (446)
T 2x3l_A           58 VILKSMKQVEK-H----S--DY-DGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALD--ISQQEGHFIETHQ  127 (446)
T ss_dssp             HHHHHHHHHCS-C----T--TE-EEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHH--HHTCCEEECEEEE
T ss_pred             HHHHHHHHHHh-c----C--CC-ceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHH--HcCCeEEEEeCee
Confidence            44566666666 5    2  33 689999999999999999999999999999999999998888  8899998888732


Q ss_pred             CCC----ccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccc-cccCCCCCccccc
Q 038416          131 EKR----WEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNH-LAFGSTPYVPMGV  205 (387)
Q Consensus       131 ~~~----~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~-~~~~~~~~~~~~~  205 (387)
                      .++    +.+|++++   +.++++++++++ .|++|.+++   +++|+++|+++|+++|+|++|+. +.|.+. ..+...
T Consensus       128 ~~~~~~~~~~d~~~l---~~~~~~~v~~~~-~n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~~f~~~-~~~~~~  199 (446)
T 2x3l_A          128 SPLTNHYNKVNLSRL---NNDGHKLVVLTY-PNYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHFGLQGF-PDSTLN  199 (446)
T ss_dssp             CTTTSSEEEEEC----------CCEEEEES-SCTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTTTSTTS-CCCGGG
T ss_pred             ccccCcCCCCCHHHH---cCCCceEEEEEC-CCCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhhccCCC-CCChHH
Confidence            222    45778877   456789999999 456999988   78999999999999999999996 334443 222223


Q ss_pred             cCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhh--hccCCcchHHHHHHHHHhhhccHHHHHHH
Q 038416          206 FGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL--NAASHPVTFIQAAVPRIVDETNEAFFAKI  283 (387)
Q Consensus       206 ~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  283 (387)
                      ...+   +++.|+||++ .++.++||+++++.  ..   + ...+....  ...++++.....++..++....+...++.
T Consensus       200 ~g~D---i~~~S~~K~l-~~~~g~g~l~~~~~--~i---~-~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~~g~~~~  269 (446)
T 2x3l_A          200 YQAD---YVVQSFHKTL-PALTMGSVLYIHKN--AP---Y-RENIIEYLSYFQTSSPSYLIMASLESAAQFYKTYDSTLF  269 (446)
T ss_dssp             GTCS---EEEECHHHHS-SSCTTCEEEEEETT--CT---T-HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHCCCHHH
T ss_pred             cCCC---EEEECCcccc-ccccccEEEEEcCC--cC---C-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCHHHH
Confidence            3332   8899999963 33345899999762  11   1 22333221  12334444444444433332111111224


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEE-cCCccCCCCeEEEEe
Q 038416          284 IGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIIL-PGRTVGMKNWLRIAF  362 (387)
Q Consensus       284 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~-~g~~~~~~~~~Ri~~  362 (387)
                      .++..++++.+++.     ++.++ .+..+.++|+.++.      .+..++...|.+ +||.+. +|     .+++|+++
T Consensus       270 ~~~~~~l~~~l~~~-----g~~~~-~~~~~~~l~i~~~~------~~~~~l~~~L~~-~GI~v~~~g-----~~~iRi~~  331 (446)
T 2x3l_A          270 FAKRAQLIECLENK-----GFEML-QVDDPLKLLIKYEG------FTGHDIQNWFMN-AHIYLELAD-----DYQALAIL  331 (446)
T ss_dssp             HHHHHHHHHHHHHH-----TCEEE-ECSSTTEEEEECTT------SCHHHHHHHHHH-TTEEESEEC-----SSCEEEEC
T ss_pred             HHHHHHHHHHHHHc-----CCEEC-cCCCCeEEEEEeCC------cCHHHHHHHHHH-CCCEEEecC-----CCEEEEEe
Confidence            44455555555444     45433 23334467777751      145667666654 599987 54     36899999


Q ss_pred             eC--ChHhHHHHHHHHHHHHHHh
Q 038416          363 AA--EPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       363 ~~--~~e~~~~~~~~l~~~~~~~  383 (387)
                      +.  +++++ +++++|+++++++
T Consensus       332 ~~~~t~e~i-~l~~aL~~~~~~~  353 (446)
T 2x3l_A          332 PLWHHDDTY-LFDSLLRKIEDMI  353 (446)
T ss_dssp             CCCCTTCCC-CHHHHHHHHHTCC
T ss_pred             ecCCCHHHH-HHHHHHHHHHHhh
Confidence            64  78899 9999999887654

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.93  E-value=1.1e-23  Score=198.48  Aligned_cols=313  Identities=21%  Similarity=0.188  Sum_probs=195.4

Q ss_pred             CCCCcHHHHHHH--HHHhcCCCCCCCCC--CCC----cHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh-
Q 038416           23 LLSDSTVAEDAV--VDALRTAHYNCYSP--TLG----VPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL-   93 (387)
Q Consensus        23 ~~~~~~~v~~a~--~~~~~~~~~~~y~~--~~~----~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-   93 (387)
                      +...|+.+.+++  ......  +..|.+  .++    ..++++.+++++      +.+++++++++|++.+++.+..++ 
T Consensus        75 ~~~~p~~v~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~la~~~------g~~~~~i~~~~g~taa~ea~~~a~~  146 (438)
T 1wyu_A           75 SHHVPPVVQALAARGEFLTA--YTPYQPEVSQGVLQATFEYQTMIAELA------GLEIANASMYDGATALAEGVLLALR  146 (438)
T ss_dssp             CCCCCHHHHHHHTSHHHHHC--CSCCSGGGCHHHHHHHHHHHHHHHHHH------TSSEECSCBSSHHHHHHHHHHHHHH
T ss_pred             CCcCcHHHHHHHhcchhhhc--CCCCcchhhhhHHHHHHHHHHHHHHHh------CCCccceEEeCcHHHHHHHHHHHHh
Confidence            567777775554  222221  122211  233    345555666665      345678889999995444444432 


Q ss_pred             cCCCCeEEEcCCCCcchHHHhhc--cCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHH
Q 038416           94 ARPGANILIPRPGYPLYEIHAAG--SNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQ  171 (387)
Q Consensus        94 ~~~g~~vl~~~p~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~  171 (387)
                      .++||+|+++.++|+.+...++.  ...|++++.++.  + ++.+|+++    +++++++|++++| ||||.+.+   ++
T Consensus       147 ~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~--~-~~~~d~~~----i~~~t~~v~i~~p-n~tG~~~~---l~  215 (438)
T 1wyu_A          147 ETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPL--E-GGRTPLPE----VGEEVGAVVVQNP-NFLGALED---LG  215 (438)
T ss_dssp             HHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECC--B-TTBCCCCC----CCTTEEEEEEESS-CTTSBCCC---HH
T ss_pred             cCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcC--c-CCccCHHH----hCCCeEEEEEECC-CCCeEEec---HH
Confidence            47899999999999988755430  048999998886  2 34677766    6778999999999 99999976   88


Q ss_pred             HHHHHHHhcCcEEeeccc-ccccccCCCCCccccccCCCccEEEEecCccccc----ccccceEEEEeeCCCCcccchhH
Q 038416          172 KIARTARNLGIIVIADEV-YNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWI----VPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       172 ~l~~~~~~~~~~li~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~----~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      +|+++|+++|+++|+|.. .+ +.  ... .+ ..+..+   +++.| +|.|+    +.|.++|++++++        ++
T Consensus       216 ~i~~la~~~g~~vivd~d~~a-~g--~~~-~~-~~~g~D---~~~~s-~kk~~~~~~~~Gp~~G~l~~~~--------~~  278 (438)
T 1wyu_A          216 PFAEAAHGAGALFVAVADPLS-LG--VLK-PP-GAYGAD---IAVGD-GQSLGLPMGFGGPHFGFLATKK--------AF  278 (438)
T ss_dssp             HHHHHHHHTTCEEEEECCTTG-GG--TBC-CH-HHHTCS---EEEEE-CTTTTCCCGGGCSCCEEEEECG--------GG
T ss_pred             HHHHHHHHcCCEEEEEechhh-cc--CcC-CC-ccCCCC---EEEEC-CcccCCCccCCCCCeeEEEEcH--------HH
Confidence            999999999999996522 22 11  101 11 223222   56666 55433    5567899999875        23


Q ss_pred             HHHHH---------------------------hhhhccCCc-chHHHHHHH--HHhhhccHHHHHHHHHHHHHHHHHHHH
Q 038416          247 VDSIK---------------------------GCLNAASHP-VTFIQAAVP--RIVDETNEAFFAKIIGLLKETADICYE  296 (387)
Q Consensus       247 ~~~~~---------------------------~~~~~~~~~-~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~  296 (387)
                      ++.+.                           +....+.+. +.....++.  ..+.......+++..++..++++++.+
T Consensus       279 ~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~  358 (438)
T 1wyu_A          279 VRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHA  358 (438)
T ss_dssp             GGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            22221                           000111111 011222222  224433445688888999999999999


Q ss_pred             HhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEE--EcCCccCCCCeEEEEee--CChHhHHHH
Q 038416          297 RIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVII--LPGRTVGMKNWLRIAFA--AEPATLEDG  372 (387)
Q Consensus       297 ~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v--~~g~~~~~~~~~Ri~~~--~~~e~~~~~  372 (387)
                      .|++++|+.+. .+. ..+.++.+...     .+..++...|. ++||.+  .++..|. ++++||+++  .++++++++
T Consensus       359 ~L~~~~g~~~~-~~~-~~~~~~~~~~~-----~~~~~~~~~L~-~~gi~v~~~~~~~~~-~~~lRis~~~~~t~edi~~~  429 (438)
T 1wyu_A          359 LLLEVPGVRPF-TPK-PFFNEFALALP-----KDPEAVRRALA-ERGFHGATPVPREYG-ENLALFAATELHEEEDLLAL  429 (438)
T ss_dssp             HHTTSTTCEEC-SCS-SBCSEEEEECS-----SCHHHHHHHHH-HTTCCCCEECCTTSC-SSEEEEECCTTCCHHHHHHH
T ss_pred             HHhcCCCeEEC-CCC-CeEEEEEEeCC-----CCHHHHHHHHH-HCCceeccccccccC-CCeEEEEecccCCHHHHHHH
Confidence            99999888844 343 22322222211     14567777775 459998  6666554 689999996  689999999


Q ss_pred             HHHHHHHH
Q 038416          373 LERIKAFC  380 (387)
Q Consensus       373 ~~~l~~~~  380 (387)
                      ++.|++++
T Consensus       430 ~~~l~~~l  437 (438)
T 1wyu_A          430 REALKEVL  437 (438)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHh
Confidence            99998754

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.92  E-value=2.1e-24  Score=204.33  Aligned_cols=298  Identities=12%  Similarity=0.090  Sum_probs=198.2

Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCEEEcCChH-HHHHHHHHhhcC--CCCeEEEcCCCCcchHHHhhccCCCceeeeeccC
Q 038416           53 PSARRGIADYLNRDLPYKLSPEDVYLTLGCS-QAIEISLSVLAR--PGANILIPRPGYPLYEIHAAGSNNNLEARHYDLL  129 (387)
Q Consensus        53 ~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~-~a~~~~~~~l~~--~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~  129 (387)
                      .++++.+.+++.+.+|.  +++ +++|+|++ .++..++.++..  +|+.|+++.++|.++...++  ..|+++..+++.
T Consensus       132 ~~~~~~~~~~la~~~g~--~~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~--~~G~~~~~v~~~  206 (456)
T 2z67_A          132 YALTNKILESFFKQLGL--NVH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVS--FVGMNMRLVETV  206 (456)
T ss_dssp             HHHHHHHHHHHHHHTTC--CCE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH--HTTCEEEEECCE
T ss_pred             HHHHHHHHHHHHHHcCC--CCC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHH--HcCCCceEEEEe
Confidence            44555566666665553  334 99999999 566655655443  67789999999999999999  899999988864


Q ss_pred             C-CCCccCChhhHHHhh-c----cCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccc
Q 038416          130 P-EKRWEVDLDGVEALA-D----ENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPM  203 (387)
Q Consensus       130 ~-~~~~~~~~~~l~~~~-~----~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~  203 (387)
                      + .+++.+|+++|++++ +    .++.+|++++|+||||.+.+   +++|.++|+++|+++|+|++|+.+..+.. ....
T Consensus       207 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~---l~~I~~la~~~g~~v~vD~A~~~~~~g~~-~~~~  282 (456)
T 2z67_A          207 LDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNYYL-EKLK  282 (456)
T ss_dssp             EETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHHH-HHHH
T ss_pred             ccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCcEEEECcchHHHHHhh-HHHH
Confidence            3 345789999999998 5    36677888999999999966   88889999999999999999986543110 0111


Q ss_pred             cccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhhccCC-cchHHHHHHHHHhhhccHHHHHH
Q 038416          204 GVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASH-PVTFIQAAVPRIVDETNEAFFAK  282 (387)
Q Consensus       204 ~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~  282 (387)
                      ..+.. ...+++.|++|++ .++.++|++++++       +++++.+......... .+...+.++   +.......+++
T Consensus       283 ~~~~~-~~D~~~~s~hK~~-~~p~g~G~l~~~~-------~~~~~~l~~~~~g~~~~~~~~~~~aa---l~~l~~~~~~~  350 (456)
T 2z67_A          283 KAFKY-RVDAVVSSSDKNL-LTPIGGGLVYSTD-------AEFIKEISLSYPGRASATPVVNTLVS---LLSMGSKNYLE  350 (456)
T ss_dssp             HHHTS-CCSEEEEEHHHHH-CCCSSCEEEEESC-------HHHHHHHHTTSCSCBCSHHHHHHHHH---HHHHHHHHHHH
T ss_pred             HhhCC-CCCEEEEcCCCCc-CCCCCeEEEEEcC-------HHHHhhcCcCCCCCCCCCHHHHHHHH---HHHHHHHHHHH
Confidence            11111 1126788999974 4558899999953       2466666433221111 112223332   23233466788


Q ss_pred             HHHHHHHHHHHHHHHhhcCC---CCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCe---EEE------cCC
Q 038416          283 IIGLLKETADICYERIKEIP---CITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESV---IIL------PGR  350 (387)
Q Consensus       283 ~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi---~v~------~g~  350 (387)
                      ..++..++++++.+.|++++   ++.+. .|.  +++++.+...   +  ...++...|. ++|+   .+.      +|.
T Consensus       351 ~~~~~~~~~~~l~~~L~~~~~~~g~~v~-~~~--~~v~~~~~~~---~--~~~~l~~~L~-~~gi~~~rv~~~~g~f~G~  421 (456)
T 2z67_A          351 LVKNQKNSKKLLDELLNDLSKKTGGKFL-DVE--SPIASCISVN---S--DPVEIAAKLY-NLRVTGPRGIKKTDHFGNC  421 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCBC-CCC--CSSEEEEECS---S--CHHHHHHHHH-HTTEESCEEECTTCHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhcccccCCEec-CCC--CeEEEEEecc---c--HHHHHHHHHH-HcCCCcceEEeecCccccc
Confidence            88999999999999999875   66633 455  4555555110   0  1245666664 4564   443      133


Q ss_pred             ccCC--CCeEEEEee--CChHhHHHHHHHHHHHH
Q 038416          351 TVGM--KNWLRIAFA--AEPATLEDGLERIKAFC  380 (387)
Q Consensus       351 ~~~~--~~~~Ri~~~--~~~e~~~~~~~~l~~~~  380 (387)
                      .|..  .+++|++++  .+++++++++++|++++
T Consensus       422 ~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~  455 (456)
T 2z67_A          422 YLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL  455 (456)
T ss_dssp             CSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred             cccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence            2222  478999996  58999999999998654

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.92  E-value=1.9e-22  Score=187.38  Aligned_cols=307  Identities=15%  Similarity=0.155  Sum_probs=207.0

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh-------cCCC
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL-------ARPG   97 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-------~~~g   97 (387)
                      ..++.+.+++.+++...   .|.+..+..++|+.++++++      .  +++++++++++++..++.++       .++|
T Consensus        12 ~~~~~~~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~------~--~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g   80 (390)
T 3b8x_A           12 TWDDLEYKAIQSVLDSK---MFTMGEYVKQYETQFAKTFG------S--KYAVMVSSGSTANLLMIAALFFTKKPRLKKG   80 (390)
T ss_dssp             CCCHHHHHHHHHHHHHT---CCSSCHHHHHHHHHHHHHHT------C--SEEEEESCHHHHHHHHHHHTTSSSSCSCCTT
T ss_pred             CCCHHHHHHHHHHHHcC---CCCCChHHHHHHHHHHHHHC------C--CcEEEECCHHHHHHHHHHHHHhhhhcCCCCc
Confidence            57889999999988753   34445678899999999993      2  36788888889999999998       7889


Q ss_pred             CeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHH
Q 038416           98 ANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTA  177 (387)
Q Consensus        98 ~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~  177 (387)
                      |+|+++.|+|+++...+.  ..|.+++.++++++ ++.+|+++|++++++++++|++++   ++|...+   +++|.++|
T Consensus        81 ~~Vi~~~~~~~~~~~~~~--~~g~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~---~~~i~~l~  151 (390)
T 3b8x_A           81 DEIIVPAVSWSTTYYPLQ--QYGLRVKFVDIDIN-TLNIDIESLKEAVTDSTKAILTVN---LLGNPNN---FDEINKII  151 (390)
T ss_dssp             CEEEEESSSCHHHHHHHH--HTTCEEEEECBCTT-TCSBCHHHHHHHCCTTEEEEEEEC---GGGCCCC---HHHHHHHH
T ss_pred             CEEEECCCCcHHHHHHHH--HcCCEEEEEecCcc-ccCcCHHHHHHHhCcCCeEEEEEC---CccChhh---HHHHHHHH
Confidence            999999999999999999  89999999988643 468899999999988899998875   4566544   89999999


Q ss_pred             HhcCcEEeecccccccc-cCCCCCccccccCCCccEEEEec--CcccccccccceEEEEeeCCCCcccchhHHHHHHhhh
Q 038416          178 RNLGIIVIADEVYNHLA-FGSTPYVPMGVFGSIVPVITLGS--ISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL  254 (387)
Q Consensus       178 ~~~~~~li~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~s--~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~  254 (387)
                      +++|+++|+|++|+... +.+      ..+.... .+...|  .+|.++ +| +.|++++++       +++.+.++...
T Consensus       152 ~~~~~~li~D~a~~~g~~~~~------~~~g~~~-~~~~~s~~~~k~~~-~g-~gG~~~~~~-------~~l~~~~~~~~  215 (390)
T 3b8x_A          152 GGRDIILLEDNCESMGATFNN------KCAGTFG-LMGTFSSFYSNHIA-TM-EGGCIVTDD-------EEIYHILLCIR  215 (390)
T ss_dssp             TTSCCEEEEECTTCTTCEETT------EETTSSS-SEEEEECCTTSSSC-SS-SCEEEEESC-------HHHHHHHHHHT
T ss_pred             HHcCCEEEEECcCcccCEECC------ccccccc-ceEEEEccCCCCCc-cC-CceEEEeCC-------HHHHHHHHHHH
Confidence            99999999999999432 221      1111111 122222  234432 23 348888864       13444443322


Q ss_pred             hcc--------------------------------CCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 038416          255 NAA--------------------------------SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIP  302 (387)
Q Consensus       255 ~~~--------------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  302 (387)
                      ...                                ...++....++...+     +.+++..++.+++++++.+.|+++|
T Consensus       216 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l-----~~l~~~~~~~~~~~~~l~~~L~~~~  290 (390)
T 3b8x_A          216 AHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQL-----KKLPRFISVRRKNAEYFLDKFKDHP  290 (390)
T ss_dssp             BTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             hcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            100                                113333333332223     4467788888899999999999887


Q ss_pred             CCCCCCCC-CceE-EEEEecCcccccCCCcHHHHHHHHHHhcCeEEEc---CCccCC----------------------C
Q 038416          303 CITCPVKP-QGAM-FVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILP---GRTVGM----------------------K  355 (387)
Q Consensus       303 ~~~~~~~~-~~g~-~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~---g~~~~~----------------------~  355 (387)
                      ++.+...+ ...+ .+++.++...  + .+..++...| .++||.+.+   |..+..                      .
T Consensus       291 ~~~~~~~~~~~~~~~~~i~~~~~~--~-~~~~~l~~~L-~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (390)
T 3b8x_A          291 YLDVQQETGESSWFGFSFIIKKDS--G-VIRKQLVENL-NSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDK  366 (390)
T ss_dssp             SEEECCCCSBCCCCEEEEEECTTS--C-CCHHHHHHHH-HHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHH
T ss_pred             CcccCCCCCCcccEEEEEEecCcC--c-ccHHHHHHHH-HHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhc
Confidence            77643222 2222 2444554210  1 1345666665 667999886   322111                      0


Q ss_pred             CeEEEEee--CChHhHHHHHHHH
Q 038416          356 NWLRIAFA--AEPATLEDGLERI  376 (387)
Q Consensus       356 ~~~Ri~~~--~~~e~~~~~~~~l  376 (387)
                      +.+|++++  .+++|++.+++.|
T Consensus       367 ~~l~l~~~~~~t~~di~~i~~~l  389 (390)
T 3b8x_A          367 NGLFVGNHQIELFDEIDYLREVL  389 (390)
T ss_dssp             HEEEEECCSSCCHHHHHHHHHHT
T ss_pred             CEEEeeCCCCCCHHHHHHHHHhh
Confidence            25899994  5899999998876

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.92  E-value=6.7e-23  Score=189.92  Aligned_cols=241  Identities=17%  Similarity=0.147  Sum_probs=176.1

Q ss_pred             HHHHHHHHHHhcC------CCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEE---cCChHHHHHHHHHhhcCCCC
Q 038416           28 TVAEDAVVDALRT------AHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYL---TLGCSQAIEISLSVLARPGA   98 (387)
Q Consensus        28 ~~v~~a~~~~~~~------~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~---~~g~~~a~~~~~~~l~~~g~   98 (387)
                      ..++++|++....      ...+.|+. .+...|++.+|++++        .+..++   ++|+++|+..++.+++++||
T Consensus        32 ~~vl~a~~~~~~~~~~~~~~~~~~y~~-~~~~~Le~~lA~l~g--------~e~alv~p~~~sGt~Ai~~al~all~~GD  102 (409)
T 3jzl_A           32 AKVLDAFQENKVSDFHFHPSTGYGYDD-EGRDTLERVYATVFK--------TEAALVRPQIISGTHAISTVLFGILRPDD  102 (409)
T ss_dssp             HHHHHHHHHTTCCGGGGCCCCTTCTTC-HHHHHHHHHHHHHHT--------CSEEEEETTSCSHHHHHHHHHHHHCCTTC
T ss_pred             HHHHHHHHHhhhhhhccCCCcCCCCCh-hHHHHHHHHHHHHhC--------CCcEEEECCCccHHHHHHHHHHHhcCCCC
Confidence            4577777775422      12234554 356889999999883        344555   88999999999999999999


Q ss_pred             eEEEcC-CCCcchHH----------HhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeC----CCCCccc
Q 038416           99 NILIPR-PGYPLYEI----------HAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIIN----PGNPCGN  163 (387)
Q Consensus        99 ~vl~~~-p~~~~~~~----------~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~----p~nptG~  163 (387)
                      +|+++. |.|..+..          .++  ..|.++..+++++  ++.+|++++++++++++++|++++    |+||||.
T Consensus       103 ~Vl~~~~~~y~~~~~~~~~~g~~~~~l~--~~G~~~~~v~~~~--~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~  178 (409)
T 3jzl_A          103 ELLYITGQPYDTLEEIVGIRKQGQGSLK--DFHIGYSSVPLLE--NGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFT  178 (409)
T ss_dssp             EEEECSSSCCTTHHHHHTSSSSSSSCTG--GGTCEEEECCCCT--TSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCC
T ss_pred             EEEEeCCCCcHhHHHHHhcccchhhHHH--HcCCEEEEeCCCC--CCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCc
Confidence            999998 99998774          345  6788888888753  457899999999999999999999    9999998


Q ss_pred             cCCHHHHHHHHHHHHh--cCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccc-cceEEEEeeCCCCc
Q 038416          164 VFSYQHLQKIARTARN--LGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPG-WRLGWLVTSDPNGI  240 (387)
Q Consensus       164 ~~~~~~~~~l~~~~~~--~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~~  240 (387)
                      +   .++++|+++|++  +|+++|+|++|+.+.+...   +. ...   ..++++|++|.++.+| ...||+++++    
T Consensus       179 v---~~l~~I~~la~~~~~~~~livD~a~~~~~~~~~---p~-~~g---~Div~~S~sK~lgg~~~~~GG~v~~~~----  244 (409)
T 3jzl_A          179 I---EKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQE---PP-EVG---ADIIAGSLIKNPGGGLAKTGGYIAGKE----  244 (409)
T ss_dssp             H---HHHHHHHHHHHHHCTTCEEEEECTTCTTTSSCC---SG-GGT---CSEEEEETTSGGGTTTCSSCEEEEECH----
T ss_pred             c---ccHHHHHHHHHhhCCCCEEEEeCCcccccccCC---cc-ccC---CeEEEECccccCCccCCceEEEEEeCH----
Confidence            7   679999999999  9999999999987653322   11 122   2388999999987766 4469998865    


Q ss_pred             ccchhHHHHHHhhhhc-----cCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 038416          241 LQNSGFVDSIKGCLNA-----ASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCIT  305 (387)
Q Consensus       241 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  305 (387)
                          +++++++.....     ..++......++...+.     .+..+.++..+++..+.+.|+++ ++.
T Consensus       245 ----~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~-----~~~~r~~~~~~~a~~la~~L~~~-g~~  304 (409)
T 3jzl_A          245 ----ALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFF-----LAPHVTAQAIKGARFTAAMLAEF-GVE  304 (409)
T ss_dssp             ----HHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred             ----HHHHHHHHHhccccccccccccHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHhC-CCc
Confidence                788888764321     11222211233322232     25667788888999999999988 455

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.91  E-value=5.9e-23  Score=187.43  Aligned_cols=327  Identities=13%  Similarity=0.038  Sum_probs=223.1

Q ss_pred             CCCCcHHHHHHHHHHhcCCCCC--------CCCC--CCCcHHHHHHHHHHHhhcCCCCCCC-CCEEE-cCChHHHHHHHH
Q 038416           23 LLSDSTVAEDAVVDALRTAHYN--------CYSP--TLGVPSARRGIADYLNRDLPYKLSP-EDVYL-TLGCSQAIEISL   90 (387)
Q Consensus        23 ~~~~~~~v~~a~~~~~~~~~~~--------~y~~--~~~~~~lr~~ia~~~~~~~~~~~~~-~~i~~-~~g~~~a~~~~~   90 (387)
                      -.+.|+.|+++|.+.+.+...+        +.+.  .....+.|+.++++++      +++ ++|++ |+|+|+++++++
T Consensus        21 ~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~------~~~~~evif~t~~~T~a~n~a~   94 (377)
T 3e77_A           21 QSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLA------VPDNYKVIFLQGGGCGQFSAVP   94 (377)
T ss_dssp             SCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHT------CCTTEEEEEESSHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhC------CCCCCeEEEEcCchHHHHHHHH
Confidence            3689999999999988642111        1111  1134566777888873      333 56887 589999999999


Q ss_pred             HhhcCC--CCeEEEcCCCCcc--hHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCC
Q 038416           91 SVLARP--GANILIPRPGYPL--YEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFS  166 (387)
Q Consensus        91 ~~l~~~--g~~vl~~~p~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  166 (387)
                      ..+..+  ||+|++...++++  +...++  ..|..+..++.+  .++..+++.++.++++++++|.+++..|.||+..|
T Consensus        95 ~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~--~~G~~~~~~~~~--~~~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~p  170 (377)
T 3e77_A           95 LNLIGLKAGRCADYVVTGAWSAKAAEEAK--KFGTINIVHPKL--GSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFD  170 (377)
T ss_dssp             HHHGGGSTTCEEEECCCSHHHHHHHHHHT--TTSEEEECSCCC--SSSCSCCCGGGCCCCTTCSCEEEESEETTTTEECS
T ss_pred             HhccCCCCCCeEEEEECCHHHHHHHHHHH--HhCCceEEeccC--CCcCCCCChHHhccCCCccEEEEeCccCchheEch
Confidence            999865  8999877776654  345566  778777776653  34456777777788889999999999999999988


Q ss_pred             HHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCccc---c
Q 038416          167 YQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQ---N  243 (387)
Q Consensus       167 ~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~---~  243 (387)
                      .        +|+++|+++++|.+++.    +..+..+..++     +++.|.+|++|++|  +|+++.++...-.-   .
T Consensus       171 i--------i~~~~~~~~~vD~~q~~----g~~~id~~~~~-----~~~~s~~K~~gp~G--~g~l~~~~~~l~~~~~~~  231 (377)
T 3e77_A          171 F--------IPDVKGAVLVCDMSSNF----LSKPVDVSKFG-----VIFAGAQKNVGSAG--VTVVIVRDDLLGFALREC  231 (377)
T ss_dssp             S--------CCCCTTCCEEEECTTTT----TSSCCCGGGCS-----EEEEEGGGTTSCTT--CEEEEEETTSCSCCCTTS
T ss_pred             h--------hhccCCCEEEEEccccc----CCCCCchhhcC-----EEEEecccccCCCc--cEEEEEcHHHHhhccCCC
Confidence            4        36788999999999985    22333343332     46789999998888  68888875331110   1


Q ss_pred             hhHHHH--HHhhhhccCCcchHHHHHHHHHhhhccHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-CC--CceEEEE
Q 038416          244 SGFVDS--IKGCLNAASHPVTFIQAAVPRIVDETNEA-FFAKIIGLLKETADICYERIKEIPCITCPV-KP--QGAMFVM  317 (387)
Q Consensus       244 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~--~~g~~~~  317 (387)
                      |.+.+.  ..+......+++.....++.++++...+. .++.+.++.+++++++++.|+++|++.... .+  ..+..+.
T Consensus       232 p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivs  311 (377)
T 3e77_A          232 PSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIP  311 (377)
T ss_dssp             CGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEE
T ss_pred             CchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEE
Confidence            222211  11111234678888888888888765555 789999999999999999999998776221 12  1233344


Q ss_pred             EecCcccccCCCc-HHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHh
Q 038416          318 VKLNVSMLEDIGD-DLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       318 ~~~~~~~~~~~~~-~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                      +.++.... + .+ +..++..+ .++||.+.+|..  ..+.+|+|+.  .++++++.+++.|++++++.
T Consensus       312 f~~~~~~~-~-~~~~~~~l~~l-~~~Gi~~~~g~~--~~g~iRiS~~~~~t~edId~l~~al~~~~~~~  375 (377)
T 3e77_A          312 FRIGNAKG-D-DALEKRFLDKA-LELNMLSLKGHR--SVGGIRASLYNAVTIEDVQKLAAFMKKFLEMH  375 (377)
T ss_dssp             EEESSTTC-C-HHHHHHHHHHH-HHTTEESCBCCT--TTCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEcCCCCC-c-hhHHHHHHHHH-HHCCcEEeCCCC--cCCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence            45542100 0 01 13455555 467999888753  2467999994  58999999999999998764

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.91  E-value=9.2e-23  Score=189.57  Aligned_cols=240  Identities=16%  Similarity=0.132  Sum_probs=174.5

Q ss_pred             HHHHHHHHHHhcC------CCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEE---cCChHHHHHHHHHhhcCCCC
Q 038416           28 TVAEDAVVDALRT------AHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYL---TLGCSQAIEISLSVLARPGA   98 (387)
Q Consensus        28 ~~v~~a~~~~~~~------~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~---~~g~~~a~~~~~~~l~~~g~   98 (387)
                      +.|++++.+....      ...+.|+.. +..+|++.++++++        .+..++   ++|+++|+..++.+++++||
T Consensus        47 ~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~-g~~~Le~~lA~l~g--------~e~alv~p~~~sGt~A~~~al~all~pGD  117 (427)
T 3hvy_A           47 LKVLKAFQEERISESHFTNSSGYGYNDI-GRDSLDRVYANIFN--------TESAFVRPHFVNGTHAIGAALFGNLRPND  117 (427)
T ss_dssp             HHHHHHHHHTTCCGGGSCCCCTTCTTCH-HHHHHHHHHHHHHT--------CSEEEEETTCCSHHHHHHHHHHHTCCTTC
T ss_pred             HHHHHHHHHHHHHHHhcccCcCCCCCch-hHHHHHHHHHHHhC--------CCceEEeCCCCcHHHHHHHHHHHhcCCCC
Confidence            5677777775432      122345543 57889999999883        344555   78899999999999999999


Q ss_pred             eEEEcC-CCCcchHH-----------HhhccCCCceeeeeccCCCCCccCChhhHHHhhc--cCceEEEEeC----CCCC
Q 038416           99 NILIPR-PGYPLYEI-----------HAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD--ENTVAIVIIN----PGNP  160 (387)
Q Consensus        99 ~vl~~~-p~~~~~~~-----------~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~v~l~~----p~np  160 (387)
                      +|++.. |.|..+..           .++  ..|.++..+++   +++.+|+++++++++  +++++|++++    |+||
T Consensus       118 ~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~--~~G~~~~~v~~---~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~np  192 (427)
T 3hvy_A          118 TMMSICGMPYDTLHDIIGMDDSKKVGSLR--EYGVKYKMVDL---KDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRK  192 (427)
T ss_dssp             EEEECSSSCCGGGHHHHTCCTTCCSCCTG--GGTCEEEECCC---BTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSC
T ss_pred             EEEEeCCCCchhHHHHhccccchhhhHHH--HcCCEEEEecC---CCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCc
Confidence            999998 99987763           344  57888888876   345789999999998  7899999999    9999


Q ss_pred             ccccCCHHHHHHHHHHHHh--cCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccc-cceEEEEeeCC
Q 038416          161 CGNVFSYQHLQKIARTARN--LGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPG-WRLGWLVTSDP  237 (387)
Q Consensus       161 tG~~~~~~~~~~l~~~~~~--~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g-~r~G~i~~~~~  237 (387)
                      ||.+   .++++|+++|++  +|+++|+|++|+.+.+...   +. ...   ..++++|+||.++.+| .+.||+++++ 
T Consensus       193 tg~v---~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~---p~-~~g---aDiv~~S~sK~lgg~g~~~GG~i~~~~-  261 (427)
T 3hvy_A          193 SLRI---AEIAEIIKSIREVNENVIVFVDNCYGEFVEEKE---PT-DVG---ADIIAGSLIKNIGGGIATTGGYIAGKE-  261 (427)
T ss_dssp             CCCH---HHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSC---GG-GGT---CSEEEEETTSGGGTTTCCSCEEEEECH-
T ss_pred             cccH---HHHHHHHHHHHHhCCCCEEEEECCccccccCCC---Cc-ccC---CeEEEECCcccccccccceEEEEEECH-
Confidence            9877   679999999999  8999999999987653322   11 122   2388999999987655 5568888865 


Q ss_pred             CCcccchhHHHHHHhhhh---ccC--CcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 038416          238 NGILQNSGFVDSIKGCLN---AAS--HPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCIT  305 (387)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  305 (387)
                             +++++++....   ...  +++......+...+     ..+..+.++..+++..+.+.|+++ ++.
T Consensus       262 -------~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl-----~~~~~r~~~~~~~a~~la~~L~~~-g~~  321 (427)
T 3hvy_A          262 -------EYVTQATFRVTVPGIGGECGSTFGVMRSLYEGL-----FMAPHVTIEAVKGAVFCARIMELA-GFD  321 (427)
T ss_dssp             -------HHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred             -------HHHHHHHHHhhcCCcccccCCCHHHHHHHHHhH-----hHHHHHHHHHHHHHHHHHHHHHhC-CCe
Confidence                   78888877432   111  11111122222222     234567788888999999999988 444

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.91  E-value=1.4e-23  Score=199.35  Aligned_cols=338  Identities=11%  Similarity=0.032  Sum_probs=213.1

Q ss_pred             cccCCCCCCCCCCCCCC-CcHHHHHHHHHHhcCC---CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHH
Q 038416            9 TRHSPWPRRPLGVSLLS-DSTVAEDAVVDALRTA---HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQ   84 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~---~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~   84 (387)
                      .++|.+-|.....  ++ .+|.+.+|+.+++...   +...|+. ....++++.+++.+.+..+  ...++|++++|+++
T Consensus        64 ~ylD~~~g~~~~~--lGh~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~--~~~~~v~f~~sGse  138 (472)
T 1ohv_A           64 RMLDLYSQISSIP--IGYSHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAP--KGMSQLITMACGSC  138 (472)
T ss_dssp             EEEESSHHHHTCS--SCBTCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCC--TTCCEEEEESSHHH
T ss_pred             EEEECCCCHhhcc--cCCCCHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCC--CCcCEEEEeCCchh
Confidence            4555544433221  23 5899999999876421   1122332 2356899999997766543  35679999999999


Q ss_pred             HHHHHHHhhc--------C-----------------CC---CeEEEcCCCCcchHHHhhccCCCcee-----------ee
Q 038416           85 AIEISLSVLA--------R-----------------PG---ANILIPRPGYPLYEIHAAGSNNNLEA-----------RH  125 (387)
Q Consensus        85 a~~~~~~~l~--------~-----------------~g---~~vl~~~p~~~~~~~~~~~~~~g~~~-----------~~  125 (387)
                      |++.+++.+.        .                 +|   +.|++.+++|+++...+. +..|...           ..
T Consensus       139 A~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~-~~~g~~~~~~~~~~~~~~~~  217 (472)
T 1ohv_A          139 SNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCL-ATTHSKAIHKIDIPSFDWPI  217 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHH-HHCCSCHHHHTTSCCCCCCE
T ss_pred             HHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHH-hcCCCccccccCCCCCCCcc
Confidence            9999998873        1                 35   899999999998654442 0222211           11


Q ss_pred             eccCCC-CC------c-----cCChhhHHHhhcc------CceEEEEeCCCCCccc-cCCHHHHHHHHHHHHhcCcEEee
Q 038416          126 YDLLPE-KR------W-----EVDLDGVEALADE------NTVAIVIINPGNPCGN-VFSYQHLQKIARTARNLGIIVIA  186 (387)
Q Consensus       126 ~~~~~~-~~------~-----~~~~~~l~~~~~~------~~~~v~l~~p~nptG~-~~~~~~~~~l~~~~~~~~~~li~  186 (387)
                      ++++.. ..      +     ..|+++|++++++      ++++|++...+|++|. .++++.+++|.++|++||+++|+
T Consensus       218 ~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~  297 (472)
T 1ohv_A          218 APFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLV  297 (472)
T ss_dssp             ECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEE
Confidence            121100 00      0     1257888888875      6677766666788997 46789999999999999999999


Q ss_pred             cccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhh-hccCCcchHHH
Q 038416          187 DEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL-NAASHPVTFIQ  265 (387)
Q Consensus       187 D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  265 (387)
                      ||+|.++.+.|.. ..+..++.. ..+.+.||||.+ ++|   |+++ ++        ++. .+.... ..+++.+++++
T Consensus       298 DEv~~g~g~~g~~-~~~~~~gv~-~~~Di~t~sK~~-l~G---G~~~-~~--------~~~-~~~~~~~~~T~~~~~~~~  361 (472)
T 1ohv_A          298 DEVQTGGGSTGKF-WAHEHWGLD-DPADVMTFSKKM-MTG---GFFH-KE--------EFR-PNAPYRIFNTWLGDPSKN  361 (472)
T ss_dssp             ECTTTTTTTTSSS-SGGGGGCCS-SCCSEEEECGGG-SSE---EEEE-CG--------GGS-CSSSSSSCCSSSSCHHHH
T ss_pred             eCcccCCCCCCCc-hhccccCCC-CCCCEEEEcccc-ccC---CccC-ch--------hhc-ccccccccCccCccHHHH
Confidence            9999987655431 122222210 002244899985 444   7766 32        221 111121 23456788888


Q ss_pred             HHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcC----CC-CCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHH
Q 038416          266 AAVPRIVDETNEAFFAKIIGLLKETADICYERIKEI----PC-ITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAK  340 (387)
Q Consensus       266 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~  340 (387)
                      .++.++|+...+   ....++++++++++++.|+++    |+ +..+ .+ .|.++++.++..     .....+...++ 
T Consensus       362 aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~-~~-~g~~~~~~~~~~-----~~~~~~~~~l~-  430 (472)
T 1ohv_A          362 LLLAEVINIIKR---EDLLSNAAHAGKVLLTGLLDLQARYPQFISRV-RG-RGTFCSFDTPDE-----SIRNKLISIAR-  430 (472)
T ss_dssp             HHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEE-EE-ETTEEEEECSSH-----HHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEee-cC-CceEEEEEeCCh-----hHHHHHHHHHH-
Confidence            888877764322   234566666667777666653    32 2211 23 355666666421     12456777765 


Q ss_pred             hcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHh
Q 038416          341 EESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       341 ~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                      ++||.+.|+.    .+++|++++  .+++++++++++|+++++++
T Consensus       431 ~~Gv~~~~~g----~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~  471 (472)
T 1ohv_A          431 NKGVMLGGCG----DKSIRFRPTLVFRDHHAHLFLNIFSDILADF  471 (472)
T ss_dssp             HTTEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             HCCeEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            5699998853    579999774  68999999999999988754

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.85  E-value=1.9e-26  Score=216.43  Aligned_cols=318  Identities=14%  Similarity=0.075  Sum_probs=209.9

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc--CCCCeEEEc
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA--RPGANILIP  103 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~g~~vl~~  103 (387)
                      .+|.+.+++++++.......|+. ....+|.+.+++++      + ..+.+++++|+++|+..+++.+.  ..+++|++.
T Consensus       117 ~~p~V~~Av~~q~~~~~~~~~~~-~~~~~Lae~L~~~~------p-~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~  188 (465)
T 2yky_A          117 SHPVIRAAVERALAVGLNLSTQT-ENEALFAEAVCDRF------P-SIDLVRFTNSGTEANLMALATATAITGRKTVLAF  188 (465)
Confidence            57899999999887643333433 34466777777665      2 45789999999999999998763  345899999


Q ss_pred             CCCCcchHHHhhc--cCCCc--eeeeeccCCCCCccCChhhHHHhhc---cCceEEEEeCCCCCcccc-CCHHHHHHHHH
Q 038416          104 RPGYPLYEIHAAG--SNNNL--EARHYDLLPEKRWEVDLDGVEALAD---ENTVAIVIINPGNPCGNV-FSYQHLQKIAR  175 (387)
Q Consensus       104 ~p~~~~~~~~~~~--~~~g~--~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~nptG~~-~~~~~~~~l~~  175 (387)
                      +++|+++...+.-  ...|.  .+..++.       -|+++|+++++   +++++|++...++++|.. .+++++++|.+
T Consensus       189 ~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-------~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~  261 (465)
T 2yky_A          189 DGGYHGGLLNFASGHAPTNAPYHVVLGVY-------NDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRA  261 (465)
Confidence            9999876543220  01233  2222221       26888888887   466666655446679965 46788999999


Q ss_pred             HHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHh---
Q 038416          176 TARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKG---  252 (387)
Q Consensus       176 ~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~---  252 (387)
                      +|++||+++|+||+|+ +.. +. ...+..+   +....+.|++|.++. |+|+||+++++        ++++.+..   
T Consensus       262 l~~~~g~llI~DEv~~-~r~-g~-~~a~~~~---gv~pDi~t~sK~lg~-G~piG~v~~~~--------~i~~~l~~~~~  326 (465)
T 2yky_A          262 EASRCGALLIFDEVMT-SRL-SG-GGAQEML---GISADLTTLGKYIGG-GMSFGAFGGRR--------DLMERFDPARD  326 (465)
Confidence            9999999999999999 632 22 1111111   112335689999875 89999999876        67776655   


Q ss_pred             ---hhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCC---CCCCCCCCCceEEEEEecCccccc
Q 038416          253 ---CLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIP---CITCPVKPQGAMFVMVKLNVSMLE  326 (387)
Q Consensus       253 ---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~g~~~~~~~~~~~~~  326 (387)
                         ....+++.++++++++.+.|+...++   ...+++.++.+++++.|+++.   ++. ...+..|.++++.+......
T Consensus       327 g~~~~~~T~~~npla~aAa~aaL~~l~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~v~g~G~~~~i~~~~~~~~  402 (465)
T 2yky_A          327 GAFAHAGTFNNNILTMSAGHAALTQIYTR---QAASDLSASGDRFRANLNRIAVENQAP-LQFTGLGSLGTIHFSRAPIR  402 (465)
Confidence               12245678888898888877753332   344555555556666555431   222 22455677888877531110


Q ss_pred             C--------CCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          327 D--------IGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       327 ~--------~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      .        ......+...++ ++||.+.|+. +.   .  +++..+++++++++++|.+++++++
T Consensus       403 ~~~~~~~~d~~~~~~~~~~ll-~~GV~v~p~~-~~---~--~s~~~t~edid~~l~~l~~~l~~~~  461 (465)
T 2yky_A          403 SAGDVRAADQQLKELFFFHML-RKGIYLAPRG-MY---A--LSLEIADAGRDAFAEALADFIGEQR  461 (465)
Confidence            0        001235666664 5799999875 22   1  6677899999999999999988764

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.91  E-value=1.4e-22  Score=188.41  Aligned_cols=255  Identities=16%  Similarity=0.129  Sum_probs=180.8

Q ss_pred             HHHHHHHHHHhcC------CCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEE---cCChHHHHHHHHHhhcCCCC
Q 038416           28 TVAEDAVVDALRT------AHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYL---TLGCSQAIEISLSVLARPGA   98 (387)
Q Consensus        28 ~~v~~a~~~~~~~------~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~---~~g~~~a~~~~~~~l~~~g~   98 (387)
                      +.|++++.+....      ...+.|+. .+..+|++.+|++++        .+..++   ++|+++|+..++.+++++||
T Consensus        46 ~~Vl~A~~~~~~~~~~~~~~~gy~y~~-~~~~~Le~~lA~l~g--------~e~alv~p~~~sGt~Ai~~al~all~pGD  116 (427)
T 3i16_A           46 LKVLNAFQEERISEAHFTNSSGYGYGD-IGRDSLDAVYARVFN--------TESALVRPHFVNGTHALGAALFGNLRPGN  116 (427)
T ss_dssp             HHHHHHHHHTTCCGGGSCCCCTTCTTC-HHHHHHHHHHHHHHT--------CSEEEEETTCCSHHHHHHHHHHHHCCTTC
T ss_pred             HHHHHHHHHhchhHHhcCCCCCCCCCH-HHHHHHHHHHHHHhC--------CcceEEeCCCccHHHHHHHHHHHHhCCCC
Confidence            4577777764321      11223444 356889999999883        233455   78899999999999999999


Q ss_pred             eEEEcC-CCCcchHHH-----------hhccCCCceeeeeccCCCCCccCChhhHHHhhc--cCceEEEEeC----CCCC
Q 038416           99 NILIPR-PGYPLYEIH-----------AAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD--ENTVAIVIIN----PGNP  160 (387)
Q Consensus        99 ~vl~~~-p~~~~~~~~-----------~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~v~l~~----p~np  160 (387)
                      +|+++. |.|..+...           +.  ..|.++..++++.  ++.+|+++++++++  +++++|++++    |+||
T Consensus       117 ~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~--~~G~~~~~v~~~~--~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~np  192 (427)
T 3i16_A          117 TMLSVCGEPYDTLHDVIGITENSNMGSLK--EFGINYKQVDLKE--DGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRR  192 (427)
T ss_dssp             EEEESSSSCCGGGHHHHTCSCCCSSCCTG--GGTCEEEECCCCT--TSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSC
T ss_pred             EEEEeCCCccHHHHHHHhccccchHHHHH--HcCCEEEEecCcc--CCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCC
Confidence            999998 999887633           34  5688888888743  34689999999998  7899999999    9999


Q ss_pred             ccccCCHHHHHHHHHHHHh--cCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccc-cceEEEEeeCC
Q 038416          161 CGNVFSYQHLQKIARTARN--LGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPG-WRLGWLVTSDP  237 (387)
Q Consensus       161 tG~~~~~~~~~~l~~~~~~--~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g-~r~G~i~~~~~  237 (387)
                      +|.+   .++++|+++|++  +|+++|+|++|+.+.+...   +. ...   ..++++|+||.++.+| .+.||+++++ 
T Consensus       193 tg~i---~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~---p~-~~g---aDiv~~S~sK~lgg~g~~~gG~i~~~~-  261 (427)
T 3i16_A          193 ALLI---EDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKE---PT-DVG---ADLIAGSLIKNIGGGIAPTGGYLAGTK-  261 (427)
T ss_dssp             CCCH---HHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSC---GG-GGT---CSEEEEETTSGGGTTTCCSCEEEEECH-
T ss_pred             cccH---HHHHHHHHHHHHhCCCCEEEEECCCccccccCC---cc-ccC---CeEEEecCcccCCCCCCceEEEEEECH-
Confidence            9877   779999999999  9999999999997653322   11 122   2388999999987766 6679999875 


Q ss_pred             CCcccchhHHHHHHhhhh---ccCCcch-HH-HHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCc
Q 038416          238 NGILQNSGFVDSIKGCLN---AASHPVT-FI-QAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQG  312 (387)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~---~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  312 (387)
                             +++++++....   ......+ +. ...+...+     ..+..+.++..+++..+.+.|+++ ++. + .|..
T Consensus       262 -------~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl-----~~~~~r~~~~~~~a~~la~~L~~~-g~~-V-~p~~  326 (427)
T 3i16_A          262 -------DCIEKTSYRLTVPGIGGECGSTFGVVRSMYQGL-----FLAPHISMEALKGAILCSRIMELA-GFE-V-MPKY  326 (427)
T ss_dssp             -------HHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHT-TCE-E-ESCT
T ss_pred             -------HHHHHHHHhcccCccCccCCccHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhC-CCe-e-cCCC
Confidence                   78888877432   1111111 21 22222222     335678888899999999999988 444 3 3333


Q ss_pred             eE-----EEEEecC
Q 038416          313 AM-----FVMVKLN  321 (387)
Q Consensus       313 g~-----~~~~~~~  321 (387)
                      ..     .+.+.+.
T Consensus       327 ~~~~~~~i~~i~l~  340 (427)
T 3i16_A          327 DEKRSDIIQSIKFN  340 (427)
T ss_dssp             TSCCSSSCEEEECS
T ss_pred             CCCCccEEEEEEEC
Confidence            32     5555564

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.91  E-value=3.3e-22  Score=196.88  Aligned_cols=311  Identities=13%  Similarity=0.058  Sum_probs=203.7

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHH-hhccCCCceeeeecc
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIH-AAGSNNNLEARHYDL  128 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~-~~~~~~g~~~~~~~~  128 (387)
                      ....++++.+|++++      .+ ..+++++|+++++.+++.+++++||+|+++.++|.++... +.  ..|++++.++.
T Consensus       173 ~~i~e~e~~lA~~~g------ae-~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~~--l~Ga~~v~v~~  243 (730)
T 1c4k_A          173 GPAVAAEKHAARVYN------AD-KTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALA--MAGGRPVYLQT  243 (730)
T ss_dssp             THHHHHHHHHHHHTT------CS-EEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTT--TTCCEEEEECE
T ss_pred             HHHHHHHHHHHHHHC------CC-cEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHH--HCCCEEEEEeC
Confidence            346788999999883      23 3577888889999999999999999999999999988877 78  88999888876


Q ss_pred             CCCCCc----cCChhhH-----HHhhccC------c----eEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeeccc
Q 038416          129 LPEKRW----EVDLDGV-----EALADEN------T----VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEV  189 (387)
Q Consensus       129 ~~~~~~----~~~~~~l-----~~~~~~~------~----~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~  189 (387)
                      ... ++    .+|+++|     +++++++      +    +++++++| |++|.+.+   +++|+++|+++|+++|+|++
T Consensus       244 ~~~-~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d---l~~I~~la~~~g~~livDeA  318 (730)
T 1c4k_A          244 NRN-PYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN---AHEVVKRIGHLCDYIEFDSA  318 (730)
T ss_dssp             EEC-TTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC---HHHHHHHHGGGBSEEEEECT
T ss_pred             Ccc-ccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC---HHHHHHHHHHcCCeEEEEcc
Confidence            432 22    3688888     8888765      5    88999998 58999977   88999999999999999999


Q ss_pred             cccc-ccCCCC--Ccccc--ccCC-CccEEEEecCcccccccccce-EEEEeeCCCCcccchhH--HHHHHhhh--hccC
Q 038416          190 YNHL-AFGSTP--YVPMG--VFGS-IVPVITLGSISKRWIVPGWRL-GWLVTSDPNGILQNSGF--VDSIKGCL--NAAS  258 (387)
Q Consensus       190 ~~~~-~~~~~~--~~~~~--~~~~-~~~~~~i~s~sK~~~~~g~r~-G~i~~~~~~~~~~~~~~--~~~~~~~~--~~~~  258 (387)
                      |+.. .+.+..  ..++.  .+.. +.+++++.|+||+  ++|.+. |+++.++.. +.+.+..  ...+....  ..+.
T Consensus       319 h~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~--L~g~~~gg~I~v~~~~-l~g~~~~i~~~~~~~~~~~~~st  395 (730)
T 1c4k_A          319 WVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQ--QAGFSQTSQIHKKDSH-IKGQLRYCDHKHFNNSFNLFMST  395 (730)
T ss_dssp             TCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHH--SSCCTTCEEEEEECGG-GTTSTTCCCHHHHHHHHHHHSCS
T ss_pred             cccccccCcccCCcCcccccccCCCCCCEEEEECCCCC--CCCCCCEEEEEecchh-hcCcccccCHHHHHHHHHHhCCC
Confidence            9743 333211  11221  1122 2457999999998  455554 566555421 1000001  12222221  1234


Q ss_pred             CcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCC--------------------------
Q 038416          259 HPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE-IPCITCPVKPQ--------------------------  311 (387)
Q Consensus       259 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~--------------------------  311 (387)
                      +++....+++..++.....+...++.+++.++++.+++.|++ ++++.++ .|.                          
T Consensus       396 sp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (730)
T 1c4k_A          396 SPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPF-VPPVVNGKKWEDGDTEDMANNIDYWRFEK  474 (730)
T ss_dssp             SCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEES-SCSEETTEEGGGSCHHHHTTCGGGGBCCT
T ss_pred             CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEc-cccccccccccccccccccccchhhccCc
Confidence            556655555555554322323355567777888888888887 6677643 221                          


Q ss_pred             -----------ce-EE-----EEEecCcc-------cccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CC
Q 038416          312 -----------GA-MF-----VMVKLNVS-------MLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AE  365 (387)
Q Consensus       312 -----------~g-~~-----~~~~~~~~-------~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~  365 (387)
                                 .+ ++     +.+.++..       ...+ .+..++...| +++||.+....    ...+|++++  .+
T Consensus       475 ~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g-~~~~~l~~~L-~e~GI~v~~~~----~~~ir~~~s~g~t  548 (730)
T 1c4k_A          475 GAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFG-VPATIVANYL-RDHGIIPEKSD----LNSILFLMTPAET  548 (730)
T ss_dssp             TCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSC-CCHHHHHHHH-HHTTCCCSEEC----SSEEEEECCTTCC
T ss_pred             cchhccccccCCcccccCCeEEEEEeCCcccccccccccC-CCHHHHHHHH-HHCCcEEEECC----CCeEEEEeCCCCC
Confidence                       11 11     33333210       0001 1455666655 55699876532    467898884  58


Q ss_pred             hHhHHHHHHHHHHHHHHhh
Q 038416          366 PATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       366 ~e~~~~~~~~l~~~~~~~~  384 (387)
                      +++++.+++.|.++.+.+.
T Consensus       549 ~e~i~~Ll~aL~~i~~~~~  567 (730)
T 1c4k_A          549 PAKMNNLITQLLQLQRLIE  567 (730)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcc
Confidence            8999999999998877653

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.90  E-value=8.7e-23  Score=187.42  Aligned_cols=323  Identities=14%  Similarity=0.028  Sum_probs=213.4

Q ss_pred             CCCcHHHHHHHHHHhcCCC--------CCCCCC--CCCcHHHHHHHHHHHhhcCCCCCCC-CCEEE-cCChHHHHHHHHH
Q 038416           24 LSDSTVAEDAVVDALRTAH--------YNCYSP--TLGVPSARRGIADYLNRDLPYKLSP-EDVYL-TLGCSQAIEISLS   91 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~--------~~~y~~--~~~~~~lr~~ia~~~~~~~~~~~~~-~~i~~-~~g~~~a~~~~~~   91 (387)
                      -+.|+.|+++|.+.+.+..        ..+.+.  .....+.|+.++++++      ++. ++|++ |+|+|+++++++.
T Consensus        36 t~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~------~~~~~evif~t~~~T~a~n~ai~  109 (386)
T 3qm2_A           36 AMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLN------IPSNYKVLFCHGGGRGQFAGVPL  109 (386)
T ss_dssp             CCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHT------CCTTEEEEEEESCTTHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhC------CCCCceEEEEcCCchHHHHHHHH
Confidence            3689999999987764311        111121  3467899999999993      433 46887 6999999999999


Q ss_pred             hhcCCCCeEEEcCCCCcc--hHHHhhccCCCceeeeeccC-CCCCccCChhhHHHhhccCceEEEEeCCCCCcccc-CCH
Q 038416           92 VLARPGANILIPRPGYPL--YEIHAAGSNNNLEARHYDLL-PEKRWEVDLDGVEALADENTVAIVIINPGNPCGNV-FSY  167 (387)
Q Consensus        92 ~l~~~g~~vl~~~p~~~~--~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~-~~~  167 (387)
                      .++++||+|++...++++  +...++  ..| ++..++.+ ..++..+++++++.++++++++|.+++..|.||+. .| 
T Consensus       110 ~l~~~gd~v~~~~~~~~~~~~~~~a~--~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~et~tG~~i~p-  185 (386)
T 3qm2_A          110 NLLGDKTTADYVDAGYWAASAIKEAK--KYC-APQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETIDGIAIDE-  185 (386)
T ss_dssp             HHCTTCCEEEEEESSHHHHHHHHHHT--TTS-EEEEEECEEEETTEEEECCGGGCCCCTTCSCEEECSEETTTTEECCC-
T ss_pred             hccCCCCeEEEEeCCHHHHHHHHHHH--HhC-CeEEEecCcccCCCCCCchHHHhhcCCCCcEEEEECCcCCcCEecCc-
Confidence            999999998765554443  445566  778 88888775 12333367888888889999999999988899996 66 


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcc---cch
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGIL---QNS  244 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~---~~~  244 (387)
                        +++|.     +|+++++|.+++.    +..+..+..++     +.+.|.+|++|++|  +|++++++...-.   ..|
T Consensus       186 --i~~i~-----~g~~~~vDa~qs~----g~~pidv~~~~-----~~~~s~hK~lGP~G--~g~l~v~~~~~~~~~~~~p  247 (386)
T 3qm2_A          186 --TPDFG-----PEVVVTADFSSTI----LSAPLDVSRYG-----VIYAGAQKNIGPAG--LTLVIVREDLLGKAHESCP  247 (386)
T ss_dssp             --CCCCC-----TTCCEEEECTTTT----TSSCCCGGGCS-----EEEEETTTTTCCTT--EEEEEEEGGGCSCCCTTSC
T ss_pred             --hhhhc-----CCCEEEEEccccc----CCCCCCccccC-----EEEEecccccCCCc--cEEEEECHHHHhhhcccCC
Confidence              44443     6999999999985    33333444442     45689999998777  7888887632100   012


Q ss_pred             hHHHH--HHhhhhccCCcchHHHHHHHHHhhhccHH-HHHHHHHHHHHHHHHHHHHhhcCCCC-CCCCCC--CceEEEEE
Q 038416          245 GFVDS--IKGCLNAASHPVTFIQAAVPRIVDETNEA-FFAKIIGLLKETADICYERIKEIPCI-TCPVKP--QGAMFVMV  318 (387)
Q Consensus       245 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~--~~g~~~~~  318 (387)
                      .+.+.  .........+++.+...++.++++...+. .++.+.++.+++++++++.|+++ ++ .....+  .....+.+
T Consensus       248 ~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~-~~~~~~~~~~~rs~~iv~f  326 (386)
T 3qm2_A          248 SILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNS-DFYRNDVAQANRSRMNVPF  326 (386)
T ss_dssp             GGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC-SSEECCBCGGGBCSSEEEE
T ss_pred             cHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCHHHcCceEEEE
Confidence            22111  11111234577778888888888765555 68999999999999999999987 44 211122  12234455


Q ss_pred             ecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHh
Q 038416          319 KLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                      .++...     -+.+++.. +.++||.+.+|...  .+.+|+|+.  .+++|++++++.|+++.++.
T Consensus       327 ~~~~~~-----~~~~~~~~-L~~~gI~~~~g~~~--~~~iRiS~~~~~t~edId~l~~~l~~~~~~~  385 (386)
T 3qm2_A          327 QLADNT-----LDKVFLEE-SFAAGLHALKGHRV--VGGMRASIYNAMPIEGVKALTDFMIDFERRH  385 (386)
T ss_dssp             EESSGG-----GHHHHHHH-HHHTTEECCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             ECCCcc-----ccHHHHHH-HHHCCCEEeCCCCC--cCeEEEEcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            555211     12455555 46779998887543  245999995  48999999999999988763

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.90  E-value=3.3e-22  Score=181.88  Aligned_cols=322  Identities=14%  Similarity=0.054  Sum_probs=215.9

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCC--------CCCC--CCCcHHHHHHHHHHHhhcCCCCCC-CCCEE
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYN--------CYSP--TLGVPSARRGIADYLNRDLPYKLS-PEDVY   77 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~--------~y~~--~~~~~~lr~~ia~~~~~~~~~~~~-~~~i~   77 (387)
                      .++++.+|..      +.|+.|+++|.+.+.+...+        +.+.  .....+.|+.++++++      ++ +++|+
T Consensus         5 ~~~~f~pgpt------~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~------~~~~~~v~   72 (361)
T 3m5u_A            5 RKINFSAGPS------TLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYE------LNDDYEVL   72 (361)
T ss_dssp             CCEECCSSSC------CCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHT------CCTTEEEE
T ss_pred             ceEeecCCCC------CCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhC------CCCCceEE
Confidence            3445567633      89999999999987631111        1111  1235567778888873      43 45788


Q ss_pred             E-cCChHHHHHHHHHhhcCCCCeEEEcCCCCc--chHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEE
Q 038416           78 L-TLGCSQAIEISLSVLARPGANILIPRPGYP--LYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVI  154 (387)
Q Consensus        78 ~-~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l  154 (387)
                      + |+|+|+++++++..+. +||++++...+++  .+...++  ..|.++..++.+....+.++++.  + +++++++|.+
T Consensus        73 f~t~~~T~a~n~~~~~~~-~~~~~~~i~~~~~~~~~~~~a~--~~G~~v~~~~~~~~g~~~~~~~~--~-l~~~t~lv~~  146 (361)
T 3m5u_A           73 FLQGGASLQFAMIPMNLA-LNGVCEYANTGVWTKKAIKEAQ--ILGVNVKTVASSEESNFDHIPRV--E-FSDNADYAYI  146 (361)
T ss_dssp             EESSHHHHHHHHHHHHHC-CSSCEEEEECSHHHHHHHHHHH--HTTCCEEEEEECTTTTSCSCCCC--C-CCTTSSEEEE
T ss_pred             EEcCcHHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHH--HcCCceEEEecccCcCCCcCChh--h-cCCCCCEEEE
Confidence            7 9999999999999998 7886532222222  2445556  68999999987643322245666  4 8889999999


Q ss_pred             eCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEe
Q 038416          155 INPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVT  234 (387)
Q Consensus       155 ~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~  234 (387)
                      ++..|.||+..+.        +++ +|+++++|.+++.    +..+..+..+     .+++.|.+|++|++|  +|+++.
T Consensus       147 ~~~e~~tG~~~~~--------i~~-~~~~~~vD~~q~~----g~~~id~~~~-----d~~~~s~~K~~gp~G--~g~l~~  206 (361)
T 3m5u_A          147 CSNNTIYGTQYQN--------YPK-TKTPLIVDASSDF----FSRKVDFSNI-----ALFYGGVQKNAGISG--LSCIFI  206 (361)
T ss_dssp             ESEETTTTEECSS--------CCC-CSSCEEEECGGGT----TSSCCCCTTE-----EEEEEETTTTSSCTT--CEEEEE
T ss_pred             eCCCCCcceeCCc--------ccc-cCCEEEEEccccc----CCCCCCcccC-----CEEEEechhccCCCc--cEEEEE
Confidence            9988999998762        233 4999999999985    2222333322     377889999998777  788888


Q ss_pred             eCCCCcccchhHHHHHHh--------------hhhccCCcchHHHHHHHHHhhhccHH-HHHHHHHHHHHHHHHHHHHhh
Q 038416          235 SDPNGILQNSGFVDSIKG--------------CLNAASHPVTFIQAAVPRIVDETNEA-FFAKIIGLLKETADICYERIK  299 (387)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~  299 (387)
                      ++        +..+.+..              ......+++.....++.++++...+. .++.+.++.+++++++++.|+
T Consensus       207 ~~--------~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~  278 (361)
T 3m5u_A          207 RK--------DMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECID  278 (361)
T ss_dssp             EH--------HHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cH--------HHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence            75        33333321              11234577888888888887754444 588899999999999999999


Q ss_pred             cCCCC-CCCCCCC--ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHH
Q 038416          300 EIPCI-TCPVKPQ--GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLE  374 (387)
Q Consensus       300 ~~~~~-~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~  374 (387)
                      +++++ .....+.  ....+.+.++..  ++  -+.++... +.++||.+.+|...  .+.+|+|+.  .+++|++.+++
T Consensus       279 ~~~g~~~~~~~~~~rs~~ivsf~~~~~--~~--~~~~~~~~-L~~~gI~~~~g~~~--~g~iRiS~~~~~t~edId~l~~  351 (361)
T 3m5u_A          279 LSNGFYKGHADKKDRSLMNVSFNIAKN--KD--LEPLFVKE-AEEAGMIGLKGHRI--LGGIRASIYNALNLDQVKTLCE  351 (361)
T ss_dssp             TSTTSEEESSCGGGBCSSEEEEEESSC--TT--HHHHHHHH-HHHTTEECCBCCTT--TCSEEEECCTTSCHHHHHHHHH
T ss_pred             HCCCeeeccCCHHHcCCeEEEEECCCc--hh--hhHHHHHH-HHHCCCEEecCCCc--cCeEEEEccCCCCHHHHHHHHH
Confidence            99766 3221222  122344445420  00  12355544 47779998887542  256999995  48999999999


Q ss_pred             HHHHHHHHh
Q 038416          375 RIKAFCQRH  383 (387)
Q Consensus       375 ~l~~~~~~~  383 (387)
                      .|+++.++.
T Consensus       352 al~~~~~~~  360 (361)
T 3m5u_A          352 FMKEFQGKY  360 (361)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999988764

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.90  E-value=6.1e-22  Score=185.03  Aligned_cols=226  Identities=16%  Similarity=0.157  Sum_probs=159.3

Q ss_pred             HHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcC-CCCcchHHHhh--------ccCCCceeeee
Q 038416           56 RRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPR-PGYPLYEIHAA--------GSNNNLEARHY  126 (387)
Q Consensus        56 r~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~-p~~~~~~~~~~--------~~~~g~~~~~~  126 (387)
                      ++.+.+++.+.++......+++++ |+++|+..++.+++++||+|+++. |.|..+...+.        ....|.+++.+
T Consensus        67 ~~~l~~~la~~~g~~~~~~~i~~~-sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~v  145 (431)
T 3ht4_A           67 RDTLEKVYADVFGAEAGLVRPQII-SGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAV  145 (431)
T ss_dssp             HHHHHHHHHHHTTCSEECCBTTSC-SHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEEC
T ss_pred             HHHHHHHHHHHhCCCcccccceee-CHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEEEe
Confidence            444444444433322222223345 678999999999999999999998 99998876553        00468888888


Q ss_pred             ccCCCCCccCChhhHHHhhccCceEEEEe-CCCCCccccCCHHHHHHHHHHHHh--cCcEEeecccccccccCCCCCccc
Q 038416          127 DLLPEKRWEVDLDGVEALADENTVAIVII-NPGNPCGNVFSYQHLQKIARTARN--LGIIVIADEVYNHLAFGSTPYVPM  203 (387)
Q Consensus       127 ~~~~~~~~~~~~~~l~~~~~~~~~~v~l~-~p~nptG~~~~~~~~~~l~~~~~~--~~~~li~D~~~~~~~~~~~~~~~~  203 (387)
                      +++.  ++.+|++++++++++++++|+++ +|+||+|...+.+++++|+++|++  +|+++|+|++|+.+.+...+   .
T Consensus       146 ~~~~--~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~---~  220 (431)
T 3ht4_A          146 PLTE--GGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEP---C  220 (431)
T ss_dssp             CBCT--TSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCG---G
T ss_pred             CCCC--CCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCc---c
Confidence            8753  46789999999999999999999 489999999999999999999999  99999999999987654321   1


Q ss_pred             cccCCCccEEEEecCcccccc-cccceEEEEeeCCCCcccchhHHHHHHhhhhc---c--CCcchHHHHHHHHHhhhccH
Q 038416          204 GVFGSIVPVITLGSISKRWIV-PGWRLGWLVTSDPNGILQNSGFVDSIKGCLNA---A--SHPVTFIQAAVPRIVDETNE  277 (387)
Q Consensus       204 ~~~~~~~~~~~i~s~sK~~~~-~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~l~~~~~  277 (387)
                       .+..   .++++|++|.++. .+...||+++++        ++++.++.....   .  .+++.....++...+.    
T Consensus       221 -~~g~---Di~~~S~sK~lgg~~~~~GG~v~~~~--------~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~----  284 (431)
T 3ht4_A          221 -HVGA---DLMAGSLIKNPGGGIVKTGGYIVGKE--------QYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFF----  284 (431)
T ss_dssp             -GTTC---SEEEEETTSGGGTTTCSSCEEEEECH--------HHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHH----
T ss_pred             -ccCC---eEEEcCccccCCCCCCCceEEEEecH--------HHHHHHHHHhccCCcccccCccHHHHHHHHhHhh----
Confidence             1222   3889999999654 224449999875        788888764321   1  1121111222222222    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 038416          278 AFFAKIIGLLKETADICYERIKEIPCIT  305 (387)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~  305 (387)
                       .+..+.++..++++.+.+.|+++ ++.
T Consensus       285 -~~~~~~~~~~~~a~~l~~~L~~~-g~~  310 (431)
T 3ht4_A          285 -LAPHVAGQALKGAIFTAAFLEKL-GMN  310 (431)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHH-TCC
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHhC-cCE
Confidence             24566777888888898999887 444

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.89  E-value=4e-21  Score=190.91  Aligned_cols=306  Identities=10%  Similarity=0.002  Sum_probs=196.3

Q ss_pred             cHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCC
Q 038416           52 VPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPE  131 (387)
Q Consensus        52 ~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~  131 (387)
                      ..++++.++++++      .+ +.+++++|+++++.+++.+++++||+|+++.|+|.++...+.  ..|++++.++....
T Consensus       207 v~~~ee~la~l~G------~d-~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~--~~G~~~v~v~~~~~  277 (755)
T 2vyc_A          207 FGESEKYAARVFG------AD-RSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLM--LTGAKPVYMVPSRN  277 (755)
T ss_dssp             HHHHHHHHHHHHT------CS-EEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHH--HHCCEEEEECCCBC
T ss_pred             HHHHHHHHHHHhC------CC-ceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHH--HcCCEEEEEeCCCC
Confidence            4677778888773      22 457888888999999999999999999999999999888888  88999998887532


Q ss_pred             CCcc----C-----ChhhHHHhhcc--Cce--------EEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccc
Q 038416          132 KRWE----V-----DLDGVEALADE--NTV--------AIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNH  192 (387)
Q Consensus       132 ~~~~----~-----~~~~l~~~~~~--~~~--------~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~  192 (387)
                       +++    +     |+++|++++++  +++        ++++++| ||+|.+.+   +++|+++|+++|+++|+|++|+.
T Consensus       278 -~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d---l~~I~~ia~~~~~~livDeA~~~  352 (755)
T 2vyc_A          278 -RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKTSDRLHFDEAWYG  352 (755)
T ss_dssp             -TTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC---HHHHHHHHTTTCSEEEEECTTCT
T ss_pred             -ccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC---HHHHHHHHHHcCCEEEEECcCch
Confidence             223    4     89999998864  344        8899998 69999977   88999999999999999999985


Q ss_pred             cc-cCCC--CCccccc--cC-CCccEEEEecCcccccccccc-eEEEEeeCCCCcccchhHHHHHHhhh--hccCCcchH
Q 038416          193 LA-FGST--PYVPMGV--FG-SIVPVITLGSISKRWIVPGWR-LGWLVTSDPNGILQNSGFVDSIKGCL--NAASHPVTF  263 (387)
Q Consensus       193 ~~-~~~~--~~~~~~~--~~-~~~~~~~i~s~sK~~~~~g~r-~G~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  263 (387)
                      .. +...  +..++..  .+ ...+++++.|+||+  ++|.+ .|++++++.....   + ...+....  ..+.+++.+
T Consensus       353 ~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~--L~g~~~g~~i~~~~~~~~i---~-~~~~~~~~~~~~s~sp~~~  426 (755)
T 2vyc_A          353 YARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKL--LNALSQASYIHVREGRGAI---N-FSRFNQAYMMHATTSPLYA  426 (755)
T ss_dssp             TGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTS--SSCCTTCEEEEEECCBTCC---C-HHHHHHHHHHTSCSSCCHH
T ss_pred             hcccCcccCCcchhcCCcCCccCCCeEEEECcccc--ccCcCCeeeeeecCccccc---C-HHHHHHHHHHhCCCCHHHH
Confidence            32 3221  1222211  12 23467899999998  45655 5777776531011   0 12222221  123556666


Q ss_pred             HHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCC---------CCCCCCCC-----------------------
Q 038416          264 IQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPC---------ITCPVKPQ-----------------------  311 (387)
Q Consensus       264 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~~-----------------------  311 (387)
                      ...++..+++........++.++..++.+.+++.|+++++         +.++ .|.                       
T Consensus       427 ~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (755)
T 2vyc_A          427 ICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPW-NKEVVTDPQTGKTYDFADAPTKLLTT  505 (755)
T ss_dssp             HHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEES-SCSEEECTTTCCEEEGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeecc-Cchhccccccccccccccccchhccc
Confidence            6666555554322221244555555666666666655444         3222 111                       


Q ss_pred             --------------------ceE------EEEEecCcccccC-----CCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEE
Q 038416          312 --------------------GAM------FVMVKLNVSMLED-----IGDDLEFCLKLAKEESVIILPGRTVGMKNWLRI  360 (387)
Q Consensus       312 --------------------~g~------~~~~~~~~~~~~~-----~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri  360 (387)
                                          .+.      -+.+.++.....|     ..+...+...| +++||.+...    ....+|+
T Consensus       506 ~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L-~~~gI~~e~~----~~~~v~~  580 (755)
T 2vyc_A          506 VQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWL-GRHGIVPTRT----TDFQIMF  580 (755)
T ss_dssp             CGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHH-HTTTCCCSEE----CSSEEEE
T ss_pred             hhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHH-HHCCCEEeec----CCCeEEE
Confidence                                111      1233333211111     11334555554 6689876432    2578999


Q ss_pred             Eee--CChHhHHHHHHHHHHHHHHh
Q 038416          361 AFA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       361 ~~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                      .++  .++++++.+++.|.+..+.+
T Consensus       581 ~~~~g~t~~~~~~l~~al~~~~~~~  605 (755)
T 2vyc_A          581 LFSMGVTRGKWGTLVNTLCSFKRHY  605 (755)
T ss_dssp             ECCTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHHHHHHHHhh
Confidence            994  58899999999998887654

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.84  E-value=1.1e-18  Score=162.58  Aligned_cols=319  Identities=13%  Similarity=0.076  Sum_probs=195.3

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc--CCCCeEEEc
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA--RPGANILIP  103 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~g~~vl~~  103 (387)
                      .+|.|.+|+++++....... .+.....+|.+.+++.+      + ..+.+++++++++|++.+++...  ...++|+..
T Consensus       104 ~hp~v~~Av~~q~~~~~~~~-~~~~~~~~lae~l~~~~------p-~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~  175 (454)
T 4ao9_A          104 SAPEIRDAVIEAMQGGINLT-GHNLLEGRLARLICERF------P-QIEQLRFTNSGTEANLMALTAALHFTGRRKIVVF  175 (454)
T ss_dssp             CCHHHHHHHHHHHHTCSCCC-SEESSHHHHHHHHHHHS------T-TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCHHHHHHHHHHHhcCCCcc-CCcHHHHHHHHHHHHhC------C-CCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEE
Confidence            67899999999988642211 22234456666666665      2 45799999999999999998864  234789999


Q ss_pred             CCCCcchHHHhhccCCC-----ceeeeeccCCCCCccCChhhHHHhhccC--ceEEEEeCC-CCCcccc-CCHHHHHHHH
Q 038416          104 RPGYPLYEIHAAGSNNN-----LEARHYDLLPEKRWEVDLDGVEALADEN--TVAIVIINP-GNPCGNV-FSYQHLQKIA  174 (387)
Q Consensus       104 ~p~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~v~l~~p-~nptG~~-~~~~~~~~l~  174 (387)
                      ..+|++...... +..+     .....+|   .    -|++.+++.++.+  ..+.++..| ++..|.+ ++++.+++|.
T Consensus       176 ~~~yHG~t~~~~-~~~~~~~~~~~~~~~p---~----nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr  247 (454)
T 4ao9_A          176 SGGYHGGVLGFG-ARPSPTTVPFDFLVLP---Y----NDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALR  247 (454)
T ss_dssp             TTCBCSTTCBBS-SSBCTTSCCSEEEEEC---T----TCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHH
T ss_pred             eCCcCCcccccc-ccccCccCCCCcccCC---C----chHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHH
Confidence            999987543222 0111     1122222   1    2678888877542  234455566 5566765 5678899999


Q ss_pred             HHHHhcCcEEeecccccccccCCCCCc-cccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhh
Q 038416          175 RTARNLGIIVIADEVYNHLAFGSTPYV-PMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGC  253 (387)
Q Consensus       175 ~~~~~~~~~li~D~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~  253 (387)
                      ++|++||+++|+||++.+  ..|.... ......+|     +.+++|.+ ..|+++|.+++++        ++.+.+...
T Consensus       248 ~lc~~~g~lLI~DEV~tG--R~G~~~a~e~~gv~PD-----i~t~gK~l-ggG~Piga~~~~~--------ei~~~~~~~  311 (454)
T 4ao9_A          248 ESATQVGALLVFDEVMTS--RLAPHGLANKLGIRSD-----LTTLGKYI-GGGMSFGAFGGRA--------DVMALFDPR  311 (454)
T ss_dssp             HHHHHHTCEEEEECTTGG--GGSTTCHHHHHTCCCS-----EEEEEGGG-GTTSSCEEEEECH--------HHHGGGCTT
T ss_pred             HHHhhcCCEEEEECCCcC--CCccccchhccCCCCc-----EEEecccc-CCCCcceeeeeHH--------HHHHHHhhc
Confidence            999999999999999984  2232221 11122232     33677995 4678999999876        676666432


Q ss_pred             -----hhccCCcchHHHHHHHHHhhhcc-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccC
Q 038416          254 -----LNAASHPVTFIQAAVPRIVDETN-EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLED  327 (387)
Q Consensus       254 -----~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  327 (387)
                           ...+++.++++.+++.+.|+... ++.+++..+.-...++.+.+.+++.+-+. . ...-|.++.+.|.......
T Consensus       312 ~~~~~h~~T~~gnPla~AAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~-~-vrg~G~m~gi~f~~~~~~~  389 (454)
T 4ao9_A          312 TGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNALCANEGVAM-Q-FTGIGSLMNAHFVQGDVRS  389 (454)
T ss_dssp             TCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTBSC-E-EEEETTEEEEESCCSCCCS
T ss_pred             cCCccccCCCCCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHhhCCCCE-E-EeeeceEEEEEEecCCCCC
Confidence                 12356778888888888877543 23333333333333444444434443211 1 1223445555553211111


Q ss_pred             C-----CcH---HHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHHhhh
Q 038416          328 I-----GDD---LEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       328 ~-----~~~---~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      .     .+.   ..+...+ .++||.+.|.      +.+.+++.+++++|++++++|++++.++..
T Consensus       390 ~~~~~~~d~~~~~~~~~~l-l~~Gv~~~p~------~~~~~s~~~T~~dId~~l~al~~~l~~~~a  448 (454)
T 4ao9_A          390 SEDLAAVDGRLRQLLFFHL-LNEDIYSSPR------GFVVLSLPLTDADIDRYVAAIGSFIGGHGA  448 (454)
T ss_dssp             GGGGTTCCHHHHHHHHHHH-HHTTEECCTT------CEEECCTTCCHHHHHHHHHHHHHHHHHSGG
T ss_pred             HHHHHhhhHHHHHHHHHHH-HHCCEEEcCC------CCEEEeCCCCHHHHHHHHHHHHHHHHhccc
Confidence            0     011   2334444 4569998774      345556667999999999999999988754

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.83  E-value=1.3e-18  Score=170.01  Aligned_cols=228  Identities=16%  Similarity=0.079  Sum_probs=152.9

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccC
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLL  129 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~  129 (387)
                      .-..++++.+|++++      . ...+++++|+++|+..++.+++++||.|+++.++|.++...+.  ..|+++++++..
T Consensus       195 g~i~eaE~~lA~~fG------a-~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~--lsGa~pv~v~~~  265 (715)
T 3n75_A          195 GPHKEAEQYIARVFN------A-DRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMM--MSDVTPIYFRPT  265 (715)
T ss_dssp             THHHHHHHHHHHHHT------C-SEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHH--HSCCEEEEECCC
T ss_pred             HHHHHHHHHHHHHhC------C-CCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHH--HcCCEEEEEecc
Confidence            346788999999983      2 2345667777899999999999999999999999999999999  999999988865


Q ss_pred             CCCCccC---------ChhhHHHhhccC--ce---EEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccc-
Q 038416          130 PEKRWEV---------DLDGVEALADEN--TV---AIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLA-  194 (387)
Q Consensus       130 ~~~~~~~---------~~~~l~~~~~~~--~~---~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~-  194 (387)
                      . +.+++         |++.++++++++  ++   ++++++| |++|.+++   +++|+++|+.++  +++|++|+... 
T Consensus       266 ~-~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~d---l~~I~ela~~~~--livDEAH~~~~~  338 (715)
T 3n75_A          266 R-NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYN---TDFIKKTLDVKS--IHFDSAWVPYTN  338 (715)
T ss_dssp             B-CTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEEC---HHHHHHHCCCSE--EEEECTTCTTGG
T ss_pred             c-cccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCC---HHHHHHHhCcCc--EEEccccccccc
Confidence            3 34443         899999998743  34   7999999 99999988   667777777653  79999998543 


Q ss_pred             cCCCCCccccccCC---Ccc-EEEEecCccccccccc-ceEEEEeeCCCCcccchhHHHHHHhhhhccCCcchHHHHHHH
Q 038416          195 FGSTPYVPMGVFGS---IVP-VITLGSISKRWIVPGW-RLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVP  269 (387)
Q Consensus       195 ~~~~~~~~~~~~~~---~~~-~~~i~s~sK~~~~~g~-r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (387)
                      +... ......+..   .+. ++++.|+||++  +|+ ..|++.+++..    +.+........ ..+.+++.+..+++.
T Consensus       339 f~~~-~~~~~al~~g~~aD~vii~~~S~hKtL--~gltqgs~i~v~~~i----~~~~~~~~~~~-~~STSpsy~~~Asld  410 (715)
T 3n75_A          339 FSPI-YEGKCGMSGGRVEGKVIYETQSTHKLL--AAFSQASMIHVKGDV----NEETFNEAYMM-HTTTSPHYGIVASTE  410 (715)
T ss_dssp             GSGG-GTTSSTTSSSCCTTCEEEEEECHHHHS--SCCTTCEEEEEESCC----CHHHHHHHHHH-TSCSSCCHHHHHHHH
T ss_pred             cCCc-cccccccccCcCCCEEEEEEecccccc--cCCCCeeEEEeCchh----hHHHHHHHHHh-hcCCCchHHHHHHHH
Confidence            3221 111111211   122 36689999994  444 45888887531    11122222222 234566676666666


Q ss_pred             HHhhhccHHHHHHHHHHHHHHHHHHHHHhhcC
Q 038416          270 RIVDETNEAFFAKIIGLLKETADICYERIKEI  301 (387)
Q Consensus       270 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  301 (387)
                      .++.......-.++.+++.++.+.+++.|+++
T Consensus       411 aA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i  442 (715)
T 3n75_A          411 TAAAMMKGNAGKRLINGSIERAIKFRKEIKRL  442 (715)
T ss_dssp             HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHh
Confidence            66543222122445566666666777666654

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.80  E-value=1.6e-17  Score=156.03  Aligned_cols=349  Identities=14%  Similarity=0.035  Sum_probs=205.6

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCC-cHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLG-VPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~-~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      .|+|..-|.-.....+ .+|.+.+|+++++..-.  +++...+ ..+....+|+.+.+..  +.+-+.|++++++++|++
T Consensus        68 ~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~l~--~~~~~~~~~~~~~~~lAe~L~~~~--p~~~~~v~f~~sGsEA~e  142 (473)
T 4e3q_A           68 RYLDANSGLWNMVAGF-DHKGLIDAAKAQYERFP--GYHAFFGRMSDQTVMLSEKLVEVS--PFDSGRVFYTNSGSEAND  142 (473)
T ss_dssp             EEEETTTTTTTCTTCS-CCHHHHHHHHHHHHHCC--CCCCCTTEEEHHHHHHHHHHHHHS--SCSSCEEEEESSHHHHHH
T ss_pred             EEEEcccCHHHhhccC-CCHHHHHHHHHHHHhcc--cccccccccCHHHHHHHHHHHhhC--CCCccEEEEeCchHHHHH
Confidence            4556544433222222 57889999999887632  2222111 1233444555554433  234568999999999999


Q ss_pred             HHHHhhc-------CCC-CeEEEcCCCCcchHHHhhccCCCc-----------eeeeeccCCC---CCccCC--------
Q 038416           88 ISLSVLA-------RPG-ANILIPRPGYPLYEIHAAGSNNNL-----------EARHYDLLPE---KRWEVD--------  137 (387)
Q Consensus        88 ~~~~~l~-------~~g-~~vl~~~p~~~~~~~~~~~~~~g~-----------~~~~~~~~~~---~~~~~~--------  137 (387)
                      .+++...       +++ .+|+....+|++...... +..|.           ....++.+..   ......        
T Consensus       143 ~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~-s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  221 (473)
T 4e3q_A          143 TMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSA-SMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARL  221 (473)
T ss_dssp             HHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHH-HHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCcceEEEeeceECCCccccc-cccccccccccCCCCCcccccCCCcccccccccchhhHHHHHH
Confidence            9998753       233 578889999987433222 01121           1111221100   000011        


Q ss_pred             hhhHHHhhc---cCceEEEEeCC-CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccE
Q 038416          138 LDGVEALAD---ENTVAIVIINP-GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPV  212 (387)
Q Consensus       138 ~~~l~~~~~---~~~~~v~l~~p-~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~  212 (387)
                      .+++++.+.   ++..+.++..| +...|++ +|++.++++.++|++||+++|+||++.+|...|..+.. ..++-... 
T Consensus       222 ~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~-e~~gv~PD-  299 (473)
T 4e3q_A          222 ARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGC-VTYDFTPD-  299 (473)
T ss_dssp             HHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHH-HHTTCCCS-
T ss_pred             HHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHH-HhcCCCCC-
Confidence            223444442   24556666666 6667775 56678999999999999999999999998766654332 12222222 


Q ss_pred             EEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhh--------hhccCCcchHHHHHHHHHhhhccHHHHHHHH
Q 038416          213 ITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGC--------LNAASHPVTFIQAAVPRIVDETNEAFFAKII  284 (387)
Q Consensus       213 ~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  284 (387)
                        +.+++|.++..++++|.+++++        ++.+.+...        ...+++.++++++++.+.|+..+++.+   .
T Consensus       300 --i~t~~K~l~gG~~Pl~av~~~~--------~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~~~l---~  366 (473)
T 4e3q_A          300 --AIISSKNLTAGFFPMGAVILGP--------ELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGL---A  366 (473)
T ss_dssp             --EEEECGGGGTTSSCCEEEEECH--------HHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHHSSH---H
T ss_pred             --hHHhcccccCCCCCcccccccH--------HHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhccccH---H
Confidence              3357799655559999999976        677766432        124667889999888888876444333   2


Q ss_pred             HHHHHHHHHHHHHhhc---CCCCCCCCCCCceEEEEEecCccccc--CC---CcHHHHHHHHHHhcCeEEEcCCccCCCC
Q 038416          285 GLLKETADICYERIKE---IPCITCPVKPQGAMFVMVKLNVSMLE--DI---GDDLEFCLKLAKEESVIILPGRTVGMKN  356 (387)
Q Consensus       285 ~~~~~~~~~~~~~l~~---~~~~~~~~~~~~g~~~~~~~~~~~~~--~~---~~~~~~~~~ll~~~gi~v~~g~~~~~~~  356 (387)
                      ++.++.-+++.+.|++   .|.+..+  ..-|.++-+.+-.....  .+   ......+...+.++|+++.|.     .+
T Consensus       367 ~~~~~~g~~l~~~L~~l~~~~~v~~v--RG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~-----g~  439 (473)
T 4e3q_A          367 ENVRRLAPRFEERLKHIAERPNIGEY--RGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPL-----GQ  439 (473)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSTTEEEE--EEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEE-----TT
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCeeEE--eecceEEEEEEecCccccccccccHHHHHHHHHHHHHCCcEEEec-----CC
Confidence            3333444455555544   3433311  22355555554221110  00   011233344456779998874     36


Q ss_pred             eEEEEe--eCChHhHHHHHHHHHHHHHHhhh
Q 038416          357 WLRIAF--AAEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       357 ~~Ri~~--~~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      .+|+.+  ..+++++++++++|.++++++.+
T Consensus       440 ~i~l~PPL~it~~eid~~~~~l~~al~~v~a  470 (473)
T 4e3q_A          440 SVVLCPPFILTEAQMDEMFDKLEKALDKVFA  470 (473)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            889987  46899999999999999988754

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.79  E-value=2.6e-17  Score=154.12  Aligned_cols=336  Identities=16%  Similarity=0.105  Sum_probs=196.9

Q ss_pred             CcHHHHHHHHHHhcCCCC-CCC-CCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc--CCCCeEE
Q 038416           26 DSTVAEDAVVDALRTAHY-NCY-SPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA--RPGANIL  101 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~-~~y-~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~g~~vl  101 (387)
                      .+|.+.+|+++++..-.. ..+ .+.....+|.+.+++..    + ....+.+++++++++|++.+++...  ....+|+
T Consensus        81 ~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~----p-~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii  155 (456)
T 4atq_A           81 SDPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLT----P-GDHAKRTVLFNSGAEAVENAVKVARLATGRDAVV  155 (456)
T ss_dssp             TCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHS----S-CSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEE
T ss_pred             CCHHHHHHHHHHHhhccCcccCccCcHHHHHHHHHHHHhC----C-CCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEE
Confidence            578999999998875321 111 11112234444444443    1 1124578999999999999998753  2347899


Q ss_pred             EcCCCCcchHHHhhccCCC-------------ceeeeeccCC----CCCccCChhhHH-------HhhccCceEEEEeCC
Q 038416          102 IPRPGYPLYEIHAAGSNNN-------------LEARHYDLLP----EKRWEVDLDGVE-------ALADENTVAIVIINP  157 (387)
Q Consensus       102 ~~~p~~~~~~~~~~~~~~g-------------~~~~~~~~~~----~~~~~~~~~~l~-------~~~~~~~~~v~l~~p  157 (387)
                      ....+|++....+. +..+             ..+..+|...    ......+.+.++       +.+.++..+.++..|
T Consensus       156 ~~~~~yHG~t~~al-s~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEP  234 (456)
T 4atq_A          156 AFDHAYHGRTNLTM-ALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEP  234 (456)
T ss_dssp             EETTCCCCSSHHHH-HHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECS
T ss_pred             EEecccCCcccccc-ccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEecc
Confidence            99999987543222 0111             1223333211    011111222222       223344556666666


Q ss_pred             -CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEee
Q 038416          158 -GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTS  235 (387)
Q Consensus       158 -~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~  235 (387)
                       +...|.. +|++.++++.++|++||+++|+||++.++...|..+. ...++-...   +.+++|.+ ..|+++|.++++
T Consensus       235 iqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a-~e~~gv~PD---ivt~gK~l-ggg~P~~av~~~  309 (456)
T 4atq_A          235 IQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFA-VDHEGVVPD---IITMAKGI-AGGLPLSAITGR  309 (456)
T ss_dssp             SBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSG-GGGTTCCCS---EEEECGGG-GTTSSCEEEEEE
T ss_pred             ccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCcccccc-ccccCCCCc---hhhhhhcc-cCcCCceeeEec
Confidence             5566765 5677899999999999999999999999876665333 222222222   33677995 578999999997


Q ss_pred             CCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHH-HHHHHHHHHHhhcCCCC--CCCC-CC
Q 038416          236 DPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLL-KETADICYERIKEIPCI--TCPV-KP  310 (387)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--~~~~-~~  310 (387)
                      +        ++.+.+.... ..+++.++.+.+++.+.|+..+++.+.++.+.+ ....+.+.+..++++..  ..+. ..
T Consensus       310 ~--------~i~~~~~~~~~~~Tf~gnpla~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VR  381 (456)
T 4atq_A          310 A--------DLLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIR  381 (456)
T ss_dssp             H--------HHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEE
T ss_pred             H--------HHHhcccccCCCCCCCCChHHHHhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEee
Confidence            6        5666554443 356788999999998888765443333322222 22233333333333211  1110 11


Q ss_pred             CceEEEEEecCcccc--cCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHh
Q 038416          311 QGAMFVMVKLNVSML--EDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       311 ~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                      .-|.++-+.+..+..  +...-...+...+ .++|+.+.+...  .++.+|+.+.  .+++++++++++|.++++.+
T Consensus       382 G~Gl~~giel~~~~~~~~~~~~~~~v~~~~-~~~Gvl~~~~g~--~~~~irl~PpL~it~~~id~~l~~l~~al~a~  455 (456)
T 4atq_A          382 GRGAMLAIELVQPGSKEPNAELTKAVAAAC-LKEGVIILTCGT--YGNVIRLLPPLVISDELLIDGLEVLAAAIKAH  455 (456)
T ss_dssp             EETTEEEEEEBCTTSCCBCHHHHHHHHHHH-HHTTEECEEECT--TSCEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             ecceEEEEEEecCCCCCcCHHHHHHHHHHH-HHCCCEEEecCC--CCCEEEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence            335666666643211  1100122344444 567999876432  2468999984  68999999999999999864

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=99.79  E-value=1.7e-16  Score=143.74  Aligned_cols=337  Identities=15%  Similarity=0.061  Sum_probs=210.3

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCC------CCCcHHHHHHHHHHHhhcCCCCCCCC--CEEEcCChHHHHHHHHHhhcCC
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSP------TLGVPSARRGIADYLNRDLPYKLSPE--DVYLTLGCSQAIEISLSVLARP   96 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~------~~~~~~lr~~ia~~~~~~~~~~~~~~--~i~~~~g~~~a~~~~~~~l~~~   96 (387)
                      -+++.|.+++-+.+.+...-+||.      -.-..+++....+...+.|+......  +|-. .|+++|+.+++.+|++|
T Consensus        65 ~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP-~SGs~AN~avy~All~P  143 (490)
T 3ou5_A           65 FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQP-YSGSPANLAVYTALLQP  143 (490)
T ss_dssp             CCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCC-SSHHHHHHHHHHHHCC-
T ss_pred             cCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCc-CCHHHHHHHHHHHHcCC
Confidence            477888888888888765555553      12244566666666666666332222  2333 45788999999999999


Q ss_pred             CCeEEEcCCCCcchHHHh------hccCCC--ceeeeeccCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCccccCCH
Q 038416           97 GANILIPRPGYPLYEIHA------AGSNNN--LEARHYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        97 g~~vl~~~p~~~~~~~~~------~~~~~g--~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~  167 (387)
                      ||+|+..+..+.+.....      ..+..|  .+...+++++++ ..+|.+++++.... ++++|+.-....|-  .++ 
T Consensus       144 GD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t-~~IDyd~~~~~A~~~kPklIi~G~SaY~r--~id-  219 (490)
T 3ou5_A          144 HDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKT-GLIDYNQLALTARLFRPRLIIAGTSAYAR--LID-  219 (490)
T ss_dssp             CCCEECBC----------------------------CBCEETTT-TEECHHHHHHHHHHHCCSEEEECCSSCCS--CCC-
T ss_pred             CCEEEecccCCCCcccccccCCCcccccccccccccccccCCCC-CcccHHHHHHHHhhcCCCeEEECCccCcc--ccC-
Confidence            999998877666542221      111223  345666666543 47999999997654 67777655444433  233 


Q ss_pred             HHHHHHHHHHHhcCcEEeeccccc-ccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcc----c
Q 038416          168 QHLQKIARTARNLGIIVIADEVYN-HLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGIL----Q  242 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~----~  242 (387)
                        .+++.++|.+.|.++++|-+|. +++-.|.-+.|+..  .+   ++.+|.+|+  ++|.|.|.|++++...-.    +
T Consensus       220 --~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~--AD---vVTtTTHKT--LrGPrGG~Il~~~~~~~~~~k~~  290 (490)
T 3ou5_A          220 --YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH--AD---IVTTTTHKT--LRGARSGLIFYRKGVKAVDPKTG  290 (490)
T ss_dssp             --HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGT--CS---EEEEESSST--TCSCSCEEEEEECSEEEECC--C
T ss_pred             --HHHHHHHHhhcccEEEechhhhhhhhcccccCCcccc--ce---EEecccccc--ccCCCceEEEecccccccccccc
Confidence              7888888889999999999998 56666655666543  23   888999998  789999999987621000    0


Q ss_pred             c---hhHHHHHHhhhh--ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEE
Q 038416          243 N---SGFVDSIKGCLN--AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVM  317 (387)
Q Consensus       243 ~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~  317 (387)
                      +   .++.+++.+.-.  .-+++.....++.+.++.+.....++...+++.+|++.|.+.|.+. |+.++........++
T Consensus       291 ~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~-G~~vvsGgTdnHlvL  369 (490)
T 3ou5_A          291 REIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHLVL  369 (490)
T ss_dssp             CEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEE
T ss_pred             chhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCCCceEEE
Confidence            0   034555544321  2234444444554444544334567888999999999999999988 788665555666777


Q ss_pred             EecCcccccCCCcHHHHHHHHHHhcCeEEE----cCCccC-CCCeEEEEe------eCChHhHHHHHHHHHHHHH
Q 038416          318 VKLNVSMLEDIGDDLEFCLKLAKEESVIIL----PGRTVG-MKNWLRIAF------AAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----~g~~~~-~~~~~Ri~~------~~~~e~~~~~~~~l~~~~~  381 (387)
                      +++.....    + ...+..+|.+.||.++    |+.... .+..+||+.      +..++++.++.+.|.+++.
T Consensus       370 vDl~~~g~----t-G~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~  439 (490)
T 3ou5_A          370 VDLRPKGL----D-GARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN  439 (490)
T ss_dssp             EECGGGTC----C-HHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             EeccccCC----C-HHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            77754322    2 3556667788999987    443211 145799999      2467888888888877664

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.76  E-value=3e-16  Score=142.83  Aligned_cols=307  Identities=13%  Similarity=0.064  Sum_probs=190.9

Q ss_pred             HHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCC----CCeEEEcCCCCcchHHHhhccCCCceeeeeccCC-CCC
Q 038416           59 IADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARP----GANILIPRPGYPLYEIHAAGSNNNLEARHYDLLP-EKR  133 (387)
Q Consensus        59 ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~----g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~-~~~  133 (387)
                      +.+|++. .|++ .....++++|+|.++.+++.+.+++    +|.|+++..+|.+....+.  ..|+++++++... .+.
T Consensus       122 ~ld~L~~-~G~~-~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAli--L~Gl~Pv~V~p~~d~~~  197 (501)
T 3hl2_A          122 VLDIIKL-AGVH-TVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMI--TAGFEPVVIENVLEGDE  197 (501)
T ss_dssp             HHHHHHH-TTCT-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHH--HTTCEEEEECEEEETTE
T ss_pred             HHHHHHH-cCCC-CCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHH--HcCCeEEEEeeeecccc
Confidence            3445554 3654 2346889999997777777776653    4999999999999999999  9999999886522 235


Q ss_pred             ccCChhhHHHhhcc---CceEEEEeCC-CCCccccCCHHHHHHHHHHHHhcCcEEeecccccccc-cCCCCCccccccC-
Q 038416          134 WEVDLDGVEALADE---NTVAIVIINP-GNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLA-FGSTPYVPMGVFG-  207 (387)
Q Consensus       134 ~~~~~~~l~~~~~~---~~~~v~l~~p-~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~-~~~~~~~~~~~~~-  207 (387)
                      ..+|++.++++++.   ...+++++.+ .+..|.+   +++++|+++|++||+++++|++|+... +....+.....+. 
T Consensus       198 ~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~---ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~Gr  274 (501)
T 3hl2_A          198 LRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVP---DRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGR  274 (501)
T ss_dssp             EEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCC---CCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSC
T ss_pred             cCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCccc---ccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCC
Confidence            68899999999865   3344455544 4434444   349999999999999999999998643 1111111122232 


Q ss_pred             CCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHH
Q 038416          208 SIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLL  287 (387)
Q Consensus       208 ~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  287 (387)
                      .|   +++.|.+|.+.++ +..+.+..++       +++++++.....  ...+....+.+...+.......+.+..++.
T Consensus       275 AD---~vVqS~HK~llvp-IGG~ii~~~d-------~e~l~~~~~~yP--Gr~S~Spsldl~~tLL~lGr~Gy~~ll~e~  341 (501)
T 3hl2_A          275 ID---AFVQSLDKNFMVP-VGGAIIAGFN-------DSFIQEISKMYP--GRASASPSLDVLITLLSLGSNGYKKLLKER  341 (501)
T ss_dssp             CC---EEEEEHHHHHCCC-SSCEEEEESC-------HHHHHHHHHTSC--SCBCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Cc---EEEecccccceee-cCceEEEeCC-------HHHHHHHHHhCC--CCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22   7888999996554 3334444544       356666644432  222222223222233334456678888888


Q ss_pred             HHHHHHHHHHhhcCC---CCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeE---E-EcCC----------
Q 038416          288 KETADICYERIKEIP---CITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVI---I-LPGR----------  350 (387)
Q Consensus       288 ~~~~~~~~~~l~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~---v-~~g~----------  350 (387)
                      .++.+++++.|+++.   +-.+...|.....+.+.+.........+..++--.| ..++|.   + .+|.          
T Consensus       342 ~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~L-f~r~vsG~Rvv~~~~~~~i~g~~f~  420 (501)
T 3hl2_A          342 KEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSML-FTRQVSGARVVPLGSMQTVSGYTFR  420 (501)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHH-HHTTCCSCEEECTTCCEEETTEEES
T ss_pred             HHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHH-HhcCCCcceeecCCCceEECCeeec
Confidence            888888888887742   333333444444455555432111111233444433 444442   3 3443          


Q ss_pred             ccCC------CCeEEEEe--eCChHhHHHHHHHHHHHHHHhhhc
Q 038416          351 TVGM------KNWLRIAF--AAEPATLEDGLERIKAFCQRHAKK  386 (387)
Q Consensus       351 ~~~~------~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~~~~  386 (387)
                      .|+.      ..++-++.  +.+++|++..+++|.+++++++++
T Consensus       421 ~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~~  464 (501)
T 3hl2_A          421 GFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKE  464 (501)
T ss_dssp             STTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            2332      25677776  568999999999999999998865

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.75  E-value=1.7e-17  Score=166.13  Aligned_cols=330  Identities=15%  Similarity=0.093  Sum_probs=195.2

Q ss_pred             cHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCC-CCCEEEcCChHHHHHHHHHhhc-----CC----
Q 038416           27 STVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLS-PEDVYLTLGCSQAIEISLSVLA-----RP----   96 (387)
Q Consensus        27 ~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~-~~~i~~~~g~~~a~~~~~~~l~-----~~----   96 (387)
                      +|.+.+|+++++..-  .++.......+....+++.+.+..+  .. -+.++++++|++|++.+++...     .+    
T Consensus       399 ~p~i~~Ai~~Q~~~l--~h~~~~~~~~~~~~~Lae~L~~~~p--~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~  474 (831)
T 4a0g_A          399 QAELAREMGYTAARF--GHVMFPENVYEPALKCAELLLDGVG--KGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCE  474 (831)
T ss_dssp             HHHHHHHHHHHHHHH--SSCCCTTEECHHHHHHHHHHHHTTT--TTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred             CHHHHHHHHHHHhhc--ccccccccCCHHHHHHHHHHHHhCC--CCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCc
Confidence            799999999988752  1221111112333455555544322  12 4689999999999999998862     12    


Q ss_pred             --------CCeEEEcCCCCcchHHHhhccCCCcee----------------------------eeeccCCC------C--
Q 038416           97 --------GANILIPRPGYPLYEIHAAGSNNNLEA----------------------------RHYDLLPE------K--  132 (387)
Q Consensus        97 --------g~~vl~~~p~~~~~~~~~~~~~~g~~~----------------------------~~~~~~~~------~--  132 (387)
                              ..+|+....+|++....+. +..|...                            ..++.+..      +  
T Consensus       475 ~~~~~~~~r~~iI~~~~syHG~T~gal-s~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~  553 (831)
T 4a0g_A          475 ATEEEKHIVVKVIALRGSYHGDTLGAM-EAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYG  553 (831)
T ss_dssp             -------CCEEEEEETTCCCCSSHHHH-HTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTT
T ss_pred             cccccccCccEEEEecCCcccCceeee-eccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccc
Confidence                    2378888888886432222 0222110                            01111100      0  


Q ss_pred             CccCC------------------hhhHHHhhc-------cCceEEEEeCC--CCCcccc-CCHHHHHHHHHHHHhcCcEE
Q 038416          133 RWEVD------------------LDGVEALAD-------ENTVAIVIINP--GNPCGNV-FSYQHLQKIARTARNLGIIV  184 (387)
Q Consensus       133 ~~~~~------------------~~~l~~~~~-------~~~~~v~l~~p--~nptG~~-~~~~~~~~l~~~~~~~~~~l  184 (387)
                      .+ -+                  .+.|++.++       +...+.++..|  ++..|.. +|++.+++|.++|++||+++
T Consensus       554 ~~-~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilL  632 (831)
T 4a0g_A          554 TF-TSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPV  632 (831)
T ss_dssp             EE-SCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCE
T ss_pred             cc-cchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeE
Confidence            00 01                  245666664       23445556666  6777775 57888999999999999999


Q ss_pred             eecccccccccCCCCCccccccCCCccEEEEecCcccccccc-cceEEEEeeCCCCcccchhHHHHHHhh-------hhc
Q 038416          185 IADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGFVDSIKGC-------LNA  256 (387)
Q Consensus       185 i~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~~~~~-------~~~  256 (387)
                      |+||++.+|+..|..+. ...++....   +.+++|.++. | +++|++++++        ++.+.+...       ...
T Consensus       633 I~DEV~tGfGRtG~~fa-~e~~gv~PD---iitlsK~L~g-G~~Plgav~~~~--------~i~~~~~~~~~~~~~~hg~  699 (831)
T 4a0g_A          633 IFDEVFTGFWRLGVETT-TELLGCKPD---IACFAKLLTG-GMVPLAVTLATD--------AVFDSFSGDSKLKALLHGH  699 (831)
T ss_dssp             EEECTTTTTTTTSBSST-HHHHSSCCS---EEEECGGGGT-TSSCCEEEEECH--------HHHHTTCSSCGGGSCCCCC
T ss_pred             EEEcCccccccCCCchh-hHhcCCCCc---EEEEeccccc-CccCcEEEEECH--------HHHHHHhcccccccceeec
Confidence            99999999877775442 222222222   3368999754 6 7999999986        677776542       124


Q ss_pred             cCCcchHHHHHHHHHhhhccHHHHHHHH----HHHHH-HHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccc-c--CC
Q 038416          257 ASHPVTFIQAAVPRIVDETNEAFFAKII----GLLKE-TADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML-E--DI  328 (387)
Q Consensus       257 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~-~--~~  328 (387)
                      +++.++++++++.+.|+..+++.+.+..    +++++ ..+.+.+.+++.|.+..+  ...|.++.+.+..... .  ..
T Consensus       700 T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~v--rg~Gl~~~iel~~~~~~~~~~~  777 (831)
T 4a0g_A          700 SYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRV--VVIGTLFALELKADASNSGYAS  777 (831)
T ss_dssp             TTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEE--EEETTEEEEEEC---------C
T ss_pred             CCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeE--eecccEEEEEEecCccccccch
Confidence            5677888888888877643221111111    11111 012334455566554422  2345566666532100 0  00


Q ss_pred             CcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHHHHh
Q 038416          329 GDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       329 ~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      .....+...+ .++||.+.|+     .+.+|+++  .++++++++++++|.++++++
T Consensus       778 ~~a~~~~~~l-~e~Gv~v~p~-----g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l  828 (831)
T 4a0g_A          778 LYAKSLLIML-REDGIFTRPL-----GNVIYLMCGPCTSPEICRRLLTKLYKRLGEF  828 (831)
T ss_dssp             HHHHHHHHHH-HHTTEECCCB-----TTEEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHH-HHCCcEEEec-----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            1123455554 5679999885     47899996  568999999999999988765

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.73  E-value=8.8e-16  Score=141.66  Aligned_cols=317  Identities=11%  Similarity=0.024  Sum_probs=187.3

Q ss_pred             cHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC----CCCeEEEcCCCCcchHHHhhccCCCceeeeec
Q 038416           52 VPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR----PGANILIPRPGYPLYEIHAAGSNNNLEARHYD  127 (387)
Q Consensus        52 ~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~----~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~  127 (387)
                      ...+.+.+..++.+..|.+ +....++++|+|.+..+++.+.++    +++.|+++..+|.++...+.  ..|+++++++
T Consensus        96 ~~~~e~~~~~~~~~~lGlp-~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~--l~Gl~p~~v~  172 (450)
T 3bc8_A           96 LNKITNSLVLNVIKLAGVH-SVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMV--TAGFEPVVIE  172 (450)
T ss_dssp             HHHHHHHHHHHHHHHHTCT-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHH--HTTCEEEEEC
T ss_pred             HHHHHHHHHHHHHHhCCCC-CCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHH--HcCCeeEEEE
Confidence            3456667777777766643 223457788887444444444333    37899999999999999999  9999988886


Q ss_pred             cCC-CCCccCChhhHHHhhcc---CceEEEEeCCC-CCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc
Q 038416          128 LLP-EKRWEVDLDGVEALADE---NTVAIVIINPG-NPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP  202 (387)
Q Consensus       128 ~~~-~~~~~~~~~~l~~~~~~---~~~~v~l~~p~-nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~  202 (387)
                      ..+ ++...+|++.++++++.   +.+++++.+|+ +.+|.+   +++++|+++|++||+++++|++|+.+...... .+
T Consensus       173 ~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~---ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~-l~  248 (450)
T 3bc8_A          173 NVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVP---DRLEELAVICANYDIPHVVNNAYGLQSSKCMH-LI  248 (450)
T ss_dssp             CEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCC---CCHHHHHHHHHHHTCCEEEECTTTTTCHHHHH-HH
T ss_pred             eeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCcee---cCHHHHHHHHHHCCCeEEEECCCchhhhhhHh-HH
Confidence            532 23568999999999964   34566666664 455666   44999999999999999999999863311000 00


Q ss_pred             ccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHH
Q 038416          203 MGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAK  282 (387)
Q Consensus       203 ~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  282 (387)
                      -..+....-..++.|++|++ +.....+++..++       ++..+++........+.+ ++.......+. ...+.+.+
T Consensus       249 ~~a~~~~~AD~~v~S~HK~l-~a~~~~~~l~~rd-------~~~~~~~~~~~~g~~s~S-psL~l~~~l~~-~G~~g~~~  318 (450)
T 3bc8_A          249 QQGARVGRIDAFVQSLDKNF-MVPVGGAIIAGFN-------EPFIQDISKMYPGRASAS-PSLDVLITLLS-LGCSGYRK  318 (450)
T ss_dssp             HHHHHHSCCCEEEEEHHHHH-SCCSSCEEEEESC-------HHHHHHHHHHSCSCBCSH-HHHHHHHHHHH-HHHHHHHH
T ss_pred             HHHhcccCCCEEEECCccCC-CchhccEEEEecC-------HHHHHHHHHHhhcCCccc-HHHHHHHHHHH-HHHHHHHH
Confidence            01120001126778999995 4445667777654       345555544331111222 23333333333 24455666


Q ss_pred             HHHHHHHHHHHHHHHhhcCC---CCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcC---eEEEc--------
Q 038416          283 IIGLLKETADICYERIKEIP---CITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEES---VIILP--------  348 (387)
Q Consensus       283 ~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g---i~v~~--------  348 (387)
                      ..++..++++++++.+++++   +..+...+..+.-..+.++........+...+...+ ...|   .-+.+        
T Consensus       319 ~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~D~tkl~i~~-~~~g~sG~~v~~~~~~~~~~  397 (450)
T 3bc8_A          319 LLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSML-FTRQVSGARAVPLGNVQTVS  397 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHH-HHTTCCSCEEECSCCEEEET
T ss_pred             HHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccccccCCCceeEEEe-cCCCCccceeeecccccchh
Confidence            76777777778888777765   665443232211112222211100011344555444 3334   33321        


Q ss_pred             CCcc---C------CCCeEEEEe--eCChHhHHHHHHHHHHHHHHhhhc
Q 038416          349 GRTV---G------MKNWLRIAF--AAEPATLEDGLERIKAFCQRHAKK  386 (387)
Q Consensus       349 g~~~---~------~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~~~~  386 (387)
                      |..|   +      ...++-+.+  +.+++++++++++|+++.++++++
T Consensus       398 ~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~~~  446 (450)
T 3bc8_A          398 GHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKE  446 (450)
T ss_dssp             TEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            1111   1      134555555  568999999999999988777653

>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22

Probab=88.66  E-value=3.8  Score=29.92  Aligned_cols=103  Identities=13%  Similarity=0.014  Sum_probs=63.8

Q ss_pred             CEEEcCChHHHHHHHHHh---hcC--CCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCc
Q 038416           75 DVYLTLGCSQAIEISLSV---LAR--PGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENT  149 (387)
Q Consensus        75 ~i~~~~g~~~a~~~~~~~---l~~--~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  149 (387)
                      +++....+...+..++-.   +.+  .+.-|+...|.+..+...+.  ..|+....+-.....+..-.+...|++++.+.
T Consensus         6 Ell~~~~g~~e~~lLlp~L~~l~~~~~~r~ilwi~pp~~~~~~~L~--~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~   83 (119)
T 1ofu_X            6 ELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLR--RAGLNRERILLLQAKDNAAALALSCEALRLGR   83 (119)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHHTTCSSSSEEEEESCCTTSCHHHHH--HTTCCTTSEEEECCSSHHHHHHHHHHHHHHTC
T ss_pred             EEeecCCCccHHHHHHHHHHHhcccccCccEEEECCCCCCCHHHHH--HcCCChHHEEEEECCCcHHHHHHHHHHHhcCC
Confidence            344444444434444433   333  45667777888888888888  88876544432222221223567778888877


Q ss_pred             eEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEE
Q 038416          150 VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIV  184 (387)
Q Consensus       150 ~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~l  184 (387)
                      ..+++..+..     ++..+.+++.-.|++.+.+.
T Consensus        84 ~~aVl~wl~~-----l~~~~~RRLqlAA~~g~~~~  113 (119)
T 1ofu_X           84 SHTVVSWLEP-----LSRAARKQLSRAAQLGQAQS  113 (119)
T ss_dssp             EEEEEECCSS-----CCHHHHHHHHHHHHHHTCEE
T ss_pred             ccEEEECCCc-----CChHHHHHHHHHHHhCCCeE
Confidence            7777776442     67788899988888776654

>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22

Probab=88.36  E-value=5.4  Score=30.82  Aligned_cols=103  Identities=13%  Similarity=0.014  Sum_probs=64.9

Q ss_pred             CEEEcCChHHHHHHHHHhh---cC--CCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCc
Q 038416           75 DVYLTLGCSQAIEISLSVL---AR--PGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENT  149 (387)
Q Consensus        75 ~i~~~~g~~~a~~~~~~~l---~~--~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  149 (387)
                      +++....+...+..+.-.+   .+  .+..|+...|-+..+...+.  ..|+....+-+....+..-.+...|++++.+.
T Consensus        48 Ell~~~~g~gel~LL~P~La~l~~~~~~r~vlwI~Pp~~l~~~~L~--~~Gl~~~rll~v~~~~~~daLwa~EqALrsG~  125 (161)
T 1oft_A           48 ELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLR--RAGLNRERILLLQAKDNAAALALSCEALRLGR  125 (161)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHHHTCSSSSEEEEESCCTTSCHHHHH--HTTCCGGGEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred             EEccCCCcHHHHHHHHHHHHHhcccccCccEEEECCCCCCCHHHHH--HcCCCHHHEEEEECCChHHHHHHHHHHHhcCC
Confidence            5555544444343333333   22  45567777777888888888  88887654433222221224567788888888


Q ss_pred             eEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEE
Q 038416          150 VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIV  184 (387)
Q Consensus       150 ~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~l  184 (387)
                      ..+++.....     ++..+.+++.-.|++.+.+.
T Consensus       126 ~~aVl~Wl~~-----l~~~~~RRLqlAAe~g~~~~  155 (161)
T 1oft_A          126 SHTVVSWLEP-----LSRAARKQLSRAAQLGQAQS  155 (161)
T ss_dssp             EEEEEECCSS-----CCHHHHHHHHHHHHHTTCEE
T ss_pred             ccEEEECCCc-----CChHHHHHHHHHHHhCCCeE
Confidence            7777776542     67788999988888776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	387
d1j32a_	388	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho	1e-64
d1b5pa_	382	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	1e-60
d1gdea_	388	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	2e-57
d1xi9a_	395	c.67.1.1 (A:) Putative alanine aminotransferase {P	7e-50
d2hoxa1	425	c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ	5e-40
d1m7ya_	431	c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy	3e-38
d1o4sa_	375	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	4e-38
d1bw0a_	412	c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Try	3e-37
d1iaya_	428	c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy	2e-34
d1w7la_	418	c.67.1.1 (A:) Kynurenine--oxoglutarate transaminas	2e-32
d1wsta1	403	c.67.1.1 (A:13-415) Multiple substrate aminotransf	4e-32
d3tata_	397	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	3e-29
d1yaaa_	412	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak	1e-28
d1ajsa_	412	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig	1e-28
d2r5ea1	418	c.67.1.1 (A:12-429) Kynurenine--oxoglutarate trans	6e-28
d2q7wa1	396	c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT	7e-28
d2gb3a1	389	c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotog	5e-26
d7aata_	401	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi	2e-25
d1c7na_	394	c.67.1.3 (A:) Cystalysin {Treponema denticola [Tax	4e-24
d1d2fa_	361	c.67.1.3 (A:) Modulator in mal gene expression, Ma	5e-24
d1u08a_	382	c.67.1.1 (A:) Putative methionine aminotransferase	1e-23
d1v2da_	368	c.67.1.1 (A:) Glutamine aminotransferase {Thermus	2e-23
d2ay1a_	394	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	2e-23
d2aeua1	366	c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Ar	7e-21
d1vp4a_	420	c.67.1.1 (A:) Putative aminotransferase TM1131 {Th	2e-17
d1fg7a_	354	c.67.1.1 (A:) Histidinol-phosphate aminotransferas	3e-11
d1lc5a_	355	c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxyl	9e-08
d1p3wa_	391	c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich	1e-06
d2f8ja1	334	c.67.1.1 (A:1-334) Histidinol-phosphate aminotrans	6e-06
d1z7da1	404	c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla	3e-04
d1jf9a_	405	c.67.1.3 (A:) NifS-like protein/selenocysteine lya	0.001
d1eg5a_	376	c.67.1.3 (A:) NifS-like protein/selenocysteine lya	0.001
d1vefa1	387	c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a	0.002

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

 Score =  209 bits (532), Expect = 1e-64
 Identities = 76/354 (21%), Positives = 148/354 (41%), Gaps = 20/354 (5%)

Query: 32  DAVVDALRTA---HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI 88
             +V+A + A       Y P  G P  R  IA  L RD       +++ +T G  Q+I  
Sbjct: 46  KHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFN 105

Query: 89  SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADEN 148
            +  +  PG  ++IP P +  Y                    E +++V  + +       
Sbjct: 106 LMLAMIEPGDEVIIPAPFWVSYPEMVK--LAEGTPVILPTTVETQFKVSPEQIRQAITPK 163

Query: 149 TVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS 208
           T  +V   P NP G V++   ++ IA+ A   G+ V++DE+Y  + +    ++ +G    
Sbjct: 164 TKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASP 223

Query: 209 IVP--VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQA 266
                 +     +K + + GWR+G+L    P           + K   ++ S+  TF Q 
Sbjct: 224 EAYERSVVCSGFAKTYAMTGWRVGFLAGPVPL-------VKAATKIQGHSTSNVCTFAQY 276

Query: 267 AVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE 326
                 + + +    +++    E      + +  +P + CP KP GA ++   +     +
Sbjct: 277 GAIAAYENS-QDCVQEMLAAFAERRRYMLDALNAMPGLECP-KPDGAFYMFPSIA----K 330

Query: 327 DIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFC 380
                L+FC +L  +  V  +PG   G  + +R+++A +  T++ G+ER++ F 
Sbjct: 331 TGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFL 384

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

 Score =  198 bits (504), Expect = 1e-60
 Identities = 76/351 (21%), Positives = 142/351 (40%), Gaps = 19/351 (5%)

Query: 32  DAVVDALRTA---HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI 88
           + V +A R A       Y+P  G+P  R  +A+   R+    ++PE+  +T+G SQA+  
Sbjct: 47  EHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFN 106

Query: 89  SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADEN 148
               +  PG  +++  P +  Y                + LPE+ +  D + V       
Sbjct: 107 LFQAILDPGDEVIVLSPYWVSYPEMV--RFAGGVVVEVETLPEEGFVPDPERVRRAITPR 164

Query: 149 TVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS 208
           T A+V+ +P NP G V+  + L+ +AR A      +++DE+Y HL +    + P  V   
Sbjct: 165 TKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPE 224

Query: 209 IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAV 268
               +T+   +K + + GWR+G+     P  +++    + S+      +   +       
Sbjct: 225 --HTLTVNGAAKAFAMTGWRIGYACG--PKEVIKA---MASVSRQSTTSPDTIAQWATLE 277

Query: 269 PRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDI 328
                E + AF        +   D+  E +  +      V+P GA +V++  +      I
Sbjct: 278 ALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGL--KAVRPSGAFYVLMDTS-----PI 330

Query: 329 GDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAF 379
             D     +   E  V ++PG        +R+++A     L   LER    
Sbjct: 331 APDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARV 381

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  190 bits (482), Expect = 2e-57
 Identities = 73/359 (20%), Positives = 148/359 (41%), Gaps = 21/359 (5%)

Query: 32  DAVVDALRTA---HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIE 87
             + +  + A       Y P +G+   R  IA+ L +    +  P+ ++ + LG +QA  
Sbjct: 41  QHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFL 100

Query: 88  ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE 147
           + LS   + G  +LIP P +  Y           +        E  + +++D ++    +
Sbjct: 101 MGLSAFLKDGEEVLIPTPAFVSYAPAVI--LAGGKPVEVPTYEEDEFRLNVDELKKYVTD 158

Query: 148 NTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPM-GVF 206
            T A++I +P NP G V + + L++IA       +IVI+DEVY H  +    +  +  + 
Sbjct: 159 KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLD 218

Query: 207 GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQA 266
           G     IT+   SK + + GWRLG++              + +    +    +       
Sbjct: 219 GMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALK 278

Query: 267 AVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE 326
                 DE +     ++         + ++R+         VKP+GA ++  ++     +
Sbjct: 279 ------DERSWKAVEEMRKEYDRRRKLVWKRL--NEMGLPTVKPKGAFYIFPRIR----D 326

Query: 327 DIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQRH 383
                 +F   + KE  V ++PG   G   + ++RI++A     LE+ ++R++   +  
Sbjct: 327 TGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLKER 385

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  170 bits (432), Expect = 7e-50
 Identities = 98/352 (27%), Positives = 161/352 (45%), Gaps = 13/352 (3%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLS 91
           +A   A++  H N Y  + G+P  R+ I +   R     ++P+DV +T   ++A+++   
Sbjct: 53  EAYCKAIKEGH-NYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFG 111

Query: 92  VLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVA 151
            L  PG  IL+P P YP Y           +   Y  + E+ W+ D+D +     + T A
Sbjct: 112 ALLDPGDEILVPGPSYPPY--TGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKA 169

Query: 152 IVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVP 211
           I +INP NP G ++  + L++I   A    I VI+DE+Y+ + +      P  +    VP
Sbjct: 170 IAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKD-VP 228

Query: 212 VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRI 271
           VI +  +SK +   GWRLG++   DP   L      ++I         P T  Q A    
Sbjct: 229 VIVMNGLSKVYFATGWRLGYMYFVDPENKLSE--VREAIDRLARIRLCPNTPAQFAAIAG 286

Query: 272 VDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDD 331
           +    + +  + +  LKE  D  Y+R+ EIP I+   KPQGA ++  K+ V       +D
Sbjct: 287 LTGPMD-YLKEYMKKLKERRDYIYKRLNEIPGIST-TKPQGAFYIFPKIEVG---PWKND 341

Query: 332 LEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQ 381
            EF L +     V+ + G   G       R  F      LE+ ++R + F +
Sbjct: 342 KEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFMK 393

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

 Score =  145 bits (366), Expect = 5e-40
 Identities = 46/379 (12%), Positives = 100/379 (26%), Gaps = 60/379 (15%)

Query: 30  AEDAVVDALRTAHYNCYSPTLGVPSA--RRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE 87
              AV+ +        ++P     S    + I +              +   +G +Q I 
Sbjct: 78  EASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIH 137

Query: 88  ISLSVLAR--------PGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLD 139
             +  L+         P + ++   P YP++               Y       W  +  
Sbjct: 138 GLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTK----------YFDKKGYVWAGNAA 187

Query: 140 GVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTP 199
               +++      ++ +P NP G +          R A   G   I D VY    +    
Sbjct: 188 NYVNVSNPEQYIEMVTSPNNPEGLL----------RHAVIKGCKSIYDMVYYWPHYTPIK 237

Query: 200 YVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASH 259
           Y            I L ++SK     G R GW +  D +           +         
Sbjct: 238 YKAD-------EDILLFTMSKFTGHSGSRFGWALIKDESVYNNL------LNYMTKNTEG 284

Query: 260 PVTFIQAAVPRIVD----------ETNEAFFAKIIGLLKETADICYERIKEIPCITCPVK 309
                Q    +++            T           L+E        + +    +    
Sbjct: 285 TPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQEL 344

Query: 310 PQGAMFVMVKLNVS------MLEDIGDDLEFCLKLAKEESVIILPGRTVGM-KNWLRIAF 362
           PQ       +           ++   ++ + C +  +   +    G        ++R++ 
Sbjct: 345 PQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSL 404

Query: 363 AAEPATLEDGLERIKAFCQ 381
                  +  +  +K   +
Sbjct: 405 IKTQDDFDQLMYYLKDMVK 423

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} Length = 431

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

 Score =  140 bits (353), Expect = 3e-38
 Identities = 69/360 (19%), Positives = 140/360 (38%), Gaps = 31/360 (8%)

Query: 46  YSPTLGVPSARRGIADYLN--RDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIP 103
           +    G+P+ ++ + D++   R       P  + LT G + A E  +  LA PG  +LIP
Sbjct: 80  FQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIP 139

Query: 104 RPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADE------NTVAIVIINP 157
            P YP ++         +E           +++    +E    E          +++ NP
Sbjct: 140 TPYYPGFDRDLK-WRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNP 198

Query: 158 GNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPM----------GVFG 207
            NP G   +   L  +     + GI +I+DE+Y+  AF S  ++ +              
Sbjct: 199 SNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSE 258

Query: 208 SIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAA 267
               V  + S+SK   +PG+R+G + +   + ++  +    S  G +++ +  +     +
Sbjct: 259 VWQRVHVVYSLSKDLGLPGFRVGAIYS--NDDMVVAAATKMSSFGLVSSQTQHLLSAMLS 316

Query: 268 VPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKL-NVSMLE 326
             ++          ++                +   I+C +     +F  V + ++    
Sbjct: 317 DKKLTKNYIAENHKRLK-----QRQKKLVSGLQKSGISC-LNGNAGLFCWVDMRHLLRSN 370

Query: 327 DIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEP-ATLEDGLERIKAFCQRH 383
               ++E   K+  E  + I PG +       W R+ FA  P  TL+  ++R+KAF   +
Sbjct: 371 TFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFVGEY 430

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

 Score =  138 bits (349), Expect = 4e-38
 Identities = 81/352 (23%), Positives = 146/352 (41%), Gaps = 25/352 (7%)

Query: 32  DAVVDALRTA---HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI 88
           + VV+            Y+   G+   R GIA  +       +SP+ V +T G  QA+  
Sbjct: 44  EPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFN 103

Query: 89  SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADEN 148
           +   L  PG  +++  P +  Y                +    K ++  L+ VE L    
Sbjct: 104 AFMALLDPGDEVIVFSPVWVSY--IPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGK 161

Query: 149 TVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS 208
           T A++I +P NP G V+  + L+ + R A+     +I+DEVY+ L +       + V   
Sbjct: 162 TKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEG 221

Query: 209 IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAV 268
              ++ +   SK   + GWR+G+                          SH  + I    
Sbjct: 222 FDRIVYINGFSKSHSMTGWRVGY-----------LISSEKVATAVSKIQSHTTSCINTVA 270

Query: 269 PRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDI 328
                +  E   + ++   KE  +   ER+K++      V+P+GA ++  K+        
Sbjct: 271 QYAALKALEVDNSYMVQTFKERKNFVVERLKKMGV--KFVEPEGAFYLFFKVR------- 321

Query: 329 GDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFC 380
           GDD++FC +L +E+ V ++PG       ++R++FA     L + L+RI+ F 
Sbjct: 322 GDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFL 373

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} Length = 412

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  137 bits (344), Expect = 3e-37
 Identities = 110/365 (30%), Positives = 180/365 (49%), Gaps = 15/365 (4%)

Query: 30  AEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNR------DLPYKLSPEDVYLTLGCS 83
               + +A+ +   N Y PT+G P AR  +A +         +L   +  ++V L  G S
Sbjct: 52  QIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGS 111

Query: 84  QAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEA 143
             I ++++ +   G   L+P+PG+P YE         +   +    PE  WE DLD +  
Sbjct: 112 HGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCR--PENDWEADLDEIRR 169

Query: 144 LADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP- 202
           L D+ T  +++ NP NPCG+ FS +H++ I R A  L + + +DE+Y  + F        
Sbjct: 170 LKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNAT 229

Query: 203 ---MGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASH 259
              +  F + VP + LG  +K  +VPGWRLGWL+    +       F++ +K        
Sbjct: 230 FTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLY--VDPHGNGPSFLEGLKRVGMLVCG 287

Query: 260 PVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVK 319
           P T +QAA+   +  T +    +I+  ++E+A   Y  I E   +     P+GAM++M +
Sbjct: 288 PCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAP-TMPRGAMYLMSR 346

Query: 320 LNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAF 379
           +++    DI  D+EF  KL +EE+V +LPG       + R+          + +ERIKAF
Sbjct: 347 IDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYREAVERIKAF 406

Query: 380 CQRHA 384
           CQRHA
Sbjct: 407 CQRHA 411

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Length = 428

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

 Score =  129 bits (325), Expect = 2e-34
 Identities = 62/357 (17%), Positives = 123/357 (34%), Gaps = 27/357 (7%)

Query: 46  YSPTLGVPSARRGIADYLNR--DLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIP 103
           +    G+P  R+ IA ++ +      +  PE V +  G + A E  +  LA PG   L+P
Sbjct: 79  FQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVP 138

Query: 104 RPGYPLYEIHAAGSNNN-----LEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPG 158
            P YP +                     +     +   +       ++     +++ NP 
Sbjct: 139 SPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPS 198

Query: 159 NPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVP------- 211
           NP G       L+ +        I ++ DE+Y    F +  +V +               
Sbjct: 199 NPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKD 258

Query: 212 -VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPR 270
            V  + S+SK   +PG+R+G + + + +        V+  +   +               
Sbjct: 259 LVHIVYSLSKDMGLPGFRVGIIYSFNDD-------VVNCARKMSSFGLVSTQTQYFLAAM 311

Query: 271 IVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLED-IG 329
           + DE     F +   +        +    E+  I C +K    +F  + L   + E    
Sbjct: 312 LSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKC-LKNNAGLFCWMDLRPLLRESTFD 370

Query: 330 DDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAA-EPATLEDGLERIKAFCQRH 383
            ++     +  +  + + PG +       W R+ FA  +  T++  L RI+ F    
Sbjct: 371 SEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGVE 427

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Length = 418

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (309), Expect = 2e-32
 Identities = 68/378 (17%), Positives = 136/378 (35%), Gaps = 33/378 (8%)

Query: 32  DAVVDALRTA-----HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPED-VYLTLGCSQA 85
           D  V+A + A       N Y+ T G P   + +A +    L  ++ P   V +T+G   A
Sbjct: 41  DFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGA 100

Query: 86  IEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLP--------EKRWEVD 137
           +  +   L   G  ++I  P +  YE     +            P           W++D
Sbjct: 101 LFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLD 160

Query: 138 LDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS 197
              +       T A+V+  P NP G VFS + L+ +A   +   ++ I DEVY  + +  
Sbjct: 161 PMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDG 220

Query: 198 TPYVPMGVFGSIVP-VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNA 256
             ++ +     +    +T+GS  K +   GW++GW++  D                  + 
Sbjct: 221 HQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDHI---MKHLRTVHQNSVFHC 277

Query: 257 ASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFV 316
            +     +  +  R      +     +           +           P+ PQG+ F+
Sbjct: 278 PTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPLIPQGSYFL 337

Query: 317 MVKL--------NVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG-------MKNWLRIA 361
           +  +        ++    D   D  F   + K + ++ +P              +++R  
Sbjct: 338 ITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFC 397

Query: 362 FAAEPATLEDGLERIKAF 379
           F  + ATL+   E+++ +
Sbjct: 398 FVKDEATLQAMDEKLRKW 415

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} Length = 403

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

 Score =  123 bits (308), Expect = 4e-32
 Identities = 74/365 (20%), Positives = 127/365 (34%), Gaps = 23/365 (6%)

Query: 32  DAVVDALRTA--HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEIS 89
              V+ L         Y  T G    R  +A ++ +     +S  ++    G  QA+++ 
Sbjct: 51  KIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLI 110

Query: 90  LSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDL--LPEKRWEVDLDGVEALADE 147
             V   PG  I++  P Y          +    +   D   +     E  L+ +      
Sbjct: 111 GRVFLNPGDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDKGMRVDLLEEKLEELRKQGKR 170

Query: 148 NTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFG 207
             +   +    NP G   S    +K+   A     +++ D  Y+ L +   P  P+  F 
Sbjct: 171 VKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFD 230

Query: 208 SIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAA 267
               VI LG+ SK  + PG+R+GW+                                   
Sbjct: 231 DYGRVIYLGTFSK-ILAPGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVE- 288

Query: 268 VPRIVDETNEAFFAKIIGLLKETADICYERIKE-IPCITCPVKPQGAMFVMVKLNVSMLE 326
                +   +    KII   K   D   E ++E +P      KP+G MFV V L      
Sbjct: 289 -----NGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTKPEGGMFVRVTL------ 337

Query: 327 DIGDDLEFCLKLAKEESVIILPGRTVGM----KNWLRIAFAAEP-ATLEDGLERIKAFCQ 381
             G D +  ++ A  + V  +PG    +    KN +R+ F   P  T+ +G+ R+    +
Sbjct: 338 PEGIDTKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETIK 397

Query: 382 RHAKK 386
              K+
Sbjct: 398 EEMKR 402

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

 Score =  115 bits (287), Expect = 3e-29
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 45/385 (11%)

Query: 19  LGVSLLSD---STVAEDAVVDALRTAH-----YNCYSPTLGVPSARRGIADYLNRDLPYK 70
           L + L  +         AV +A    +      + Y P  G+   R  IA  L       
Sbjct: 31  LSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPV 90

Query: 71  LSPEDVYLTLGCSQAIE----ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHY 126
           L  + V        +              P + + +  P +  +    A      E   Y
Sbjct: 91  LKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFA--GAGFEVSTY 148

Query: 127 DLLPEKRWEVDLDGVEAL---ADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGII 183
               E    V  + + A        ++ ++     NP G   +      +    +   +I
Sbjct: 149 PWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELI 208

Query: 184 VIADEVYNHLAFGSTPYVP--MGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGIL 241
              D  Y     G          +  + +P +   S SK + + G R+G L     +   
Sbjct: 209 PFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEA 268

Query: 242 QNSGFVDSIKGCLNAASHPVTFIQAAVPRIV--DETNEAFFAKIIGLLKETADICYERIK 299
                           S P  F    V  ++  +    ++ A++  +      +  E +K
Sbjct: 269 AGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVK 328

Query: 300 EIPCITCP-----VKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM 354
            +           +  Q  MF    L+               +L +E  V ++       
Sbjct: 329 VLSTEMPERNFDYLLNQRGMFSYTGLSA----------AQVDRLREEFGVYLIAS----- 373

Query: 355 KNWLRIAFAAEPATLEDGL-ERIKA 378
               R+  A         + +   A
Sbjct: 374 ---GRMCVAGLNTANVQRVAKAFAA 395

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

 Score =  113 bits (283), Expect = 1e-28
 Identities = 50/378 (13%), Positives = 110/378 (29%), Gaps = 43/378 (11%)

Query: 30  AEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEIS 89
           AE  + +     H   Y    G+PS     A  +       L  + V      S    + 
Sbjct: 55  AEKLIHNDSSYNHE--YLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALH 112

Query: 90  LSVLA----RPGANILIPRPGYPLYEIHAAGSNNNL-EARHYDLLPEKRWEVDLDGVEAL 144
           +S        P   + + +P +  +               ++    +             
Sbjct: 113 ISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQK 172

Query: 145 ADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-- 202
           A E ++ ++     NP G   + +   +I     +   I + D  Y   A G        
Sbjct: 173 APEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYA 232

Query: 203 ----MGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDP----NGILQNSGFVDSIKGCL 254
               +    ++ PV    S +K   + G R+G    +      N  ++ +      K   
Sbjct: 233 VRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIR 292

Query: 255 NAASHPVTFIQAAVPRIVD-----ETNEAFFAKIIGLLKETADICYERIKEI--PCITCP 307
           +  S+P  +    V ++++     E        +   + +      + + ++  P     
Sbjct: 293 SEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDH 352

Query: 308 VKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAA-EP 366
           +  Q  MF    L            +   +L +  +V ++           R + A    
Sbjct: 353 IVNQCGMFSFTGLTP----------QMVKRLEETHAVYLVAS--------GRASIAGLNQ 394

Query: 367 ATLEDGLERIKAFCQRHA 384
             +E   + I    + +A
Sbjct: 395 GNVEYVAKAIDEVVRFYA 412

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

 Score =  113 bits (283), Expect = 1e-28
 Identities = 50/376 (13%), Positives = 102/376 (27%), Gaps = 44/376 (11%)

Query: 30  AEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE---------DVYLTL 80
            E  + +     H   Y P LG+   R   +     D    L  +               
Sbjct: 56  VEQRIANNSSLNHE--YLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALR 113

Query: 81  GCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDG 140
             ++ +    +        + +  P +  +      +    + R Y     ++  +DL G
Sbjct: 114 IGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFK-DIRSYRYWDTEKRGLDLQG 172

Query: 141 VEALAD---ENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS 197
             +  +   E ++ ++     NP G   + +  ++IA   +   +    D  Y   A G+
Sbjct: 173 FLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGN 232

Query: 198 TPYVPMGVF---GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL 254
                  +         +    S SK + +   R+G L                  K   
Sbjct: 233 LEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVR 292

Query: 255 NAASHPVTFIQAAVPRIVDETN-----EAFFAKIIGLLKETADICYERIKEI--PCITCP 307
              S+P       V R + +             +   +         R++ +  P     
Sbjct: 293 VTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNH 352

Query: 308 VKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEP- 366
           +  Q  MF    LN           +    L  ++ + +LP          RI       
Sbjct: 353 ITDQIGMFSFTGLNP----------KQVEYLINQKHIYLLPS--------GRINMCGLTT 394

Query: 367 ATLEDGLERIKAFCQR 382
             L+     I     +
Sbjct: 395 KNLDYVATSIHEAVTK 410

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} Length = 418

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

 Score =  111 bits (278), Expect = 6e-28
 Identities = 71/379 (18%), Positives = 140/379 (36%), Gaps = 31/379 (8%)

Query: 32  DAVVDALRTA------HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPED-VYLTLGCSQ 84
              ++AL  A        N Y+   G P   + ++   ++ +   ++P   V +T+G  +
Sbjct: 42  KYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYE 101

Query: 85  AIEISLSVLARPGANILIPRPGYPLYEIH--AAGSNNNLEARHYD----LLPEKRWEVDL 138
           A+  ++      G  ++I  P +  YE    AAG          +     +    W +D 
Sbjct: 102 ALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDN 161

Query: 139 DGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGST 198
           + +EAL +E T  I+I  P NP G V     L+ +A   +   ++ ++DEVY H+ F   
Sbjct: 162 NELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPF 221

Query: 199 PYVPMGVF-GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAA 257
            ++ +    G     IT+GS  K + + GW++GW    +           + +  C    
Sbjct: 222 EHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPI 281

Query: 258 SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVM 317
              +        + +      F +      +  A   Y           P  PQG  F++
Sbjct: 282 QEAIAVGFETELKRLKSPECYFNSISG---ELMAKRDYMASFLAEVGMNPTVPQGGYFMV 338

Query: 318 V-------KLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM-------KNWLRIAFA 363
                   K++++   D   D  F   + K   +  +P             ++++R  F 
Sbjct: 339 ADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF 398

Query: 364 AEPATLEDGLERIKAFCQR 382
            +   L+   E ++ +   
Sbjct: 399 KKDENLQKAAEILRKWKGS 417

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

 Score =  111 bits (277), Expect = 7e-28
 Identities = 52/362 (14%), Positives = 97/362 (26%), Gaps = 33/362 (9%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLS 91
            A    L       Y    G+P   R   + L       ++ +             + ++
Sbjct: 51  KAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVA 110

Query: 92  VLARPGAN----ILIPRPGYPLYEIHAAGSNNNLEA-RHYDLLPEKRWEVDLDGVEALAD 146
                       + +  P +P ++     +   +    +YD          L      A 
Sbjct: 111 ADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQ 170

Query: 147 ENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGS--TPYVPMG 204
              V +      NP G   + +  Q +A+ +   G + + D  Y   A G          
Sbjct: 171 AGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRA 230

Query: 205 VFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFI 264
                  +I   S SK + +   R+G       +    +  F           S+P    
Sbjct: 231 FAAMHKELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHG 290

Query: 265 QAAVPRIVDETN-----EAFFAKIIGLLKETADICYERIKEIPCITC--PVKPQGAMFVM 317
            + V  I+         E     +   ++    +    ++E         +  Q  MF  
Sbjct: 291 ASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSF 350

Query: 318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAA-EPATLEDGLERI 376
             L            E  L+L +E  V  +           R+  A   P  +    E I
Sbjct: 351 SGLTK----------EQVLRLREEFGVYAVAS--------GRVNVAGMTPDNMAPLCEAI 392

Query: 377 KA 378
            A
Sbjct: 393 VA 394

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} Length = 389

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

 Score =  106 bits (263), Expect = 5e-26
 Identities = 81/365 (22%), Positives = 135/365 (36%), Gaps = 36/365 (9%)

Query: 32  DAVVDALRTA--HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEIS 89
           +   + +         YS + G+   R   A Y  R     + PE+V +T G S+AI  S
Sbjct: 44  EVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFS 103

Query: 90  LSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENT 149
            +V+A PG  IL+  P Y  Y   A  +   L      +        +L+   +  +E T
Sbjct: 104 FAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLE---SFINERT 160

Query: 150 VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSI 209
             IV+ NP NP G V+    ++ +   A   G+ +I DEVY+ + F       + +    
Sbjct: 161 KGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDK 220

Query: 210 VPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVP 269
           V VI   S+SK++   G R+G L+T +   I                       +     
Sbjct: 221 VVVID--SVSKKFSACGARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLDD 278

Query: 270 RIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIG 329
              D   E +  +              +  E   +    KP GA ++  +L       + 
Sbjct: 279 SFFDFVRETYRER---------VETVLKKLEEHGLKRFTKPSGAFYITAEL------PVE 323

Query: 330 DDLEFCLKLAKE-----ESVIILPGRTVGM-----KNWLRIAFAAEPATLEDGLERI--- 376
           D  EF   +  +     E+ ++ P R   +     K  +RIA   E   L   ++ +   
Sbjct: 324 DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEG 383

Query: 377 -KAFC 380
            K FC
Sbjct: 384 LKMFC 388

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

 Score =  104 bits (259), Expect = 2e-25
 Identities = 47/366 (12%), Positives = 93/366 (25%), Gaps = 39/366 (10%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLS 91
            A            Y P  G+    R  A+    +              G S    + + 
Sbjct: 53  KAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVG 112

Query: 92  VL-----ARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALA- 145
                   +   ++ +P+P +  +       +  L+ + Y     K   +D  G      
Sbjct: 113 ANFLQRFFKFSRDVYLPKPSWGNH--TPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDIS 170

Query: 146 --DENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPM 203
              E ++ ++     NP G     +  +++A   +   ++   D  Y   A G       
Sbjct: 171 KIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAW 230

Query: 204 G---VFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHP 260
                    + V+   S +K   + G R G       +                   S+P
Sbjct: 231 ALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNP 290

Query: 261 VTFIQAAVPRIVDETN-----EAFFAKIIGLLKETADICYERIKEI--PCITCPVKPQGA 313
                     I++              +   +          +K+         +  Q  
Sbjct: 291 PMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIG 350

Query: 314 MFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAA-EPATLEDG 372
           MF    L            E   +L KE S+ +            RI+ A    + +   
Sbjct: 351 MFCFTGLKP----------EQVERLTKEFSIYMTKD--------GRISVAGVASSNVGYL 392

Query: 373 LERIKA 378
              I  
Sbjct: 393 AHAIHQ 398

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} Length = 394

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

 Score =  100 bits (249), Expect = 4e-24
 Identities = 44/354 (12%), Positives = 102/354 (28%), Gaps = 11/354 (3%)

Query: 32  DAVVDALRTA-HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISL 90
             +++ L+          T      ++ +  ++     + +  + +  T G   A+  ++
Sbjct: 47  PELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAV 106

Query: 91  SVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTV 150
               +PG  ++I  P Y  + +        +                    +   D+N  
Sbjct: 107 REFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNK 166

Query: 151 AIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIV 210
           A++  +P NP G V+    LQKI        +++ +DE++  L      +         +
Sbjct: 167 ALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQL 226

Query: 211 PVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPR 270
              T+   +         +G       N  ++               +           +
Sbjct: 227 ADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYK 286

Query: 271 IVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGD 330
              +  +     I    K    +        P I  P   +G     +           D
Sbjct: 287 ECGKWLDGCIKVID---KNQRIVKDFFEVNHPEIKAP-LIEGTYLQWIDFR----ALKMD 338

Query: 331 DLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQR 382
                  +  +  +    G   G     + RI  AA  + +++ LER+    + 
Sbjct: 339 HKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKD 392

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} Length = 361

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

 Score =   99 bits (247), Expect = 5e-24
 Identities = 57/366 (15%), Positives = 124/366 (33%), Gaps = 22/366 (6%)

Query: 28  TVAE------DAVVDALRTA---HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYL 78
           T+++        +++AL          YS           IA + +      +  + V  
Sbjct: 5   TISDMDFATAPCIIEALNQRLMHGVFGYSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVY 63

Query: 79  TLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDL 138
                  +   +   +  G  ++I  P Y  +     G+   +     +   +  +    
Sbjct: 64  GPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMG 123

Query: 139 DGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGST 198
                LA      +++ +P NP G V++   L+ +A      G+ VI+DE++  + +G  
Sbjct: 124 KLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQ 183

Query: 199 PYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAAS 258
           P++P          +   S SK + +P     + +  + +        +    G  + + 
Sbjct: 184 PHIPWSNVARGDWALL-TSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSV 242

Query: 259 HPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMV 318
             +T   AA  +        +   +   LK+      +++           PQ      +
Sbjct: 243 LALTAHIAAYQQ-----GAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWL 297

Query: 319 KLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERI 376
            L         DD      L ++E V I+PG T G   + ++R+      + LE G+  +
Sbjct: 298 DLR----PLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGL 353

Query: 377 KAFCQR 382
               + 
Sbjct: 354 INAIRA 359

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

 Score = 99.0 bits (245), Expect = 1e-23
 Identities = 64/354 (18%), Positives = 115/354 (32%), Gaps = 23/354 (6%)

Query: 32  DAVVDALRTA---HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI 88
             + + L        N Y+P  GV + R  IA    R   Y+   +        +     
Sbjct: 42  RYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALY 101

Query: 89  SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADEN 148
           +         + +I       Y+ +A     +        L    + VD     AL  E 
Sbjct: 102 AAITALVRNGDEVICFDPS--YDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSER 159

Query: 149 TVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS 208
           T  +++  P NP   V+       + +      I VI+DEVY H+ F    +  +     
Sbjct: 160 TRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQ 219

Query: 209 IVP-VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAA 267
           +    + + S  K + + GW++G+ V   P                   A   +  +  A
Sbjct: 220 LRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRA 279

Query: 268 VPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLED 327
            P       + +  K                     +   +  +G  F++V  +      
Sbjct: 280 EPEHYLALPDFYRQK---------RDILVNALNESRLEI-LPCEGTYFLLVDYS---AVS 326

Query: 328 IGDDLEFCLKLAKEESVIILPGRTVGM----KNWLRIAFAAEPATLEDGLERIK 377
             DD+EFC  L +E  V  +P             +R+ FA + +TL    ER++
Sbjct: 327 TLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLR 380

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 98.3 bits (243), Expect = 2e-23
 Identities = 80/354 (22%), Positives = 138/354 (38%), Gaps = 33/354 (9%)

Query: 32  DAVVDALRTA--HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEIS 89
             +++A+R A    + Y+P  G+P+ R  +A+       + + PE V +T G ++A+ + 
Sbjct: 41  PFLLEAVRRALGRQDQYAPPAGLPALREALAEE------FAVEPESVVVTSGATEALYVL 94

Query: 90  LSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENT 149
           L  L  PG  +++  P + +Y   A  +         DL PE     DL  +E      T
Sbjct: 95  LQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRL-DLSALEKALTPRT 153

Query: 150 VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSI 209
            A+++  P NP G VF  + L+ IAR AR   + +I+DEVY+ L +G  P          
Sbjct: 154 RALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPER 213

Query: 210 VPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVP 269
              +       R    G+R+GW          +      +      + S P         
Sbjct: 214 TFTVGSAGK--RLEATGYRVGW------IVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAE 265

Query: 270 RIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIG 329
            +     E F+  +    +   D+    ++ +        P+G  F+M +L        G
Sbjct: 266 ALKLARREGFYEALREGYRRRRDLLAGGLRAMGL--RVYVPEGTYFLMAELP-------G 316

Query: 330 DDLEFCLKLAKEESVIILPGRTVGM----KNWLRIAFAAEPATLEDGLERIKAF 379
            D     +L +E  V ++P     +    K+  R AF      L   LER+   
Sbjct: 317 WD---AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRV 367

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

 Score = 98.5 bits (244), Expect = 2e-23
 Identities = 44/346 (12%), Positives = 93/346 (26%), Gaps = 33/346 (9%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPED-VYLTLGCSQAIEISL 90
            A    L T     Y+   G P  ++ + + +  D     +      +    +    + L
Sbjct: 51  AAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALEL 110

Query: 91  SVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPE---KRWEVDLDGVEALADE 147
           + +A P   + +  P +P +          L  + Y              +    A A +
Sbjct: 111 ARMANPDLRVFVSDPTWPNHVSIMN--FMGLPVQTYRYFDAETRGVDFEGMKADLAAAKK 168

Query: 148 NTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFG 207
             + ++     NP G   +     +IA      G + + D  Y     G           
Sbjct: 169 GDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLI 228

Query: 208 SI--VPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQ 265
           +     V+   S SK + +   R G L+    +   +               S P     
Sbjct: 229 ASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGA 288

Query: 266 AAVPRIVDETN-----EAFFAKIIGLLKETADICYERIKEIPCITC--PVKPQGAMFVMV 318
             V  ++          A    +   +    +     ++++        V     MF  +
Sbjct: 289 KIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRL 348

Query: 319 KLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAA 364
                         E   ++ +E  + ++           RI  A 
Sbjct: 349 GATP----------EQVKRIKEEFGIYMVGD--------SRINIAG 376

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 366

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 90.7 bits (224), Expect = 7e-21
 Identities = 57/361 (15%), Positives = 105/361 (29%), Gaps = 31/361 (8%)

Query: 24  LSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCS 83
           LS   + ++     L T        +            +L  D       +        S
Sbjct: 28  LSGGFLIDEKDKALLNTY----IGSSYFAEKVNEYGLKHLGGD-----ENDKCVGFNRTS 78

Query: 84  QAIEISLSVLARPGANILIP-RPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVE 142
            AI  ++  L        +P  PG+P  E         + A++++          +  + 
Sbjct: 79  SAILATILALKPKKVIHYLPELPGHPSIERSC----KIVNAKYFESD-------KVGEIL 127

Query: 143 ALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP 202
              D++T+ I+  +  +    V   ++ +K+  TA+N   IV  D+             P
Sbjct: 128 NKIDKDTLVIITGSTMDL--KVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPP 185

Query: 203 MGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVT 262
               G+ + V +     K    P   L        + I                A     
Sbjct: 186 ALKLGADLVVTST---DKLMEGPRGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRA 242

Query: 263 FIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNV 322
                + RI      A          E  +   + I +   I    +     FV+ ++  
Sbjct: 243 LKNFNLERIRKAFERA--KNFDLSKIEKLNKELKAIDDNINI--VYERTPTGFVIKRVYK 298

Query: 323 SMLEDIGDDLEFCLKLAKEESVIILPGRTV-GMKNWLRIAFAAEPATLEDGLERIKAFCQ 381
               +I   +E    L K   +I +    + G    LRI   +  A   D    IKA  +
Sbjct: 299 DDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVE 358

Query: 382 R 382
            
Sbjct: 359 S 359

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} Length = 420

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

 Score = 81.4 bits (199), Expect = 2e-17
 Identities = 48/365 (13%), Positives = 99/365 (27%), Gaps = 16/365 (4%)

Query: 32  DAVVDALRTAHYNC--YSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEIS 89
           +   + +   ++    YS T G P  ++ I   L R        ED  +    SQ     
Sbjct: 60  EIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDL 119

Query: 90  LSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENT 149
           +  L     +  +      L  I+A                     V    +        
Sbjct: 120 IGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLEDDGMDLNVLERKLSEFDKNGK 179

Query: 150 VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSI 209
           +  V         +  +        R A           +     +G+  Y    V    
Sbjct: 180 IKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIF 239

Query: 210 VPVITLGSISKRWIVPGWRLGWLVT--SDPNGILQNSGFVDSIKGCLNAASHPVTFIQAA 267
                   +           G  +   +     ++            + A       +  
Sbjct: 240 KIGGPERVVLLNTFSKVLAPGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYL 299

Query: 268 VPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLED 327
               + E  +              +   E   +IP +   VK +G +F+ + L       
Sbjct: 300 ERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKW-VKSEGGLFIWLTLPEGF--- 355

Query: 328 IGDDLEFCLKLAKEESVIILPGRTVGM----KNWLRIAFAAEP-ATLEDGLERIKAFCQR 382
             D  E   + AK + V  +PGR   +       +R++F   P   + +G++R++     
Sbjct: 356 --DTWEMF-EYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLE 412

Query: 383 HAKKQ 387
           + K++
Sbjct: 413 YGKEK 417

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} Length = 354

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

 Score = 62.1 bits (149), Expect = 3e-11
 Identities = 46/343 (13%), Positives = 102/343 (29%), Gaps = 34/343 (9%)

Query: 37  ALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARP 96
            L     N Y P     +     A Y        + PE V ++ G  + IE+ +     P
Sbjct: 44  QLTQQTLNRY-PECQPKAVIENYAQY------AGVKPEQVLVSRGADEGIELLIRAFCEP 96

Query: 97  GANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIIN 156
           G + ++  P        +A +          L   +     +        +    + + +
Sbjct: 97  GKDAILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLDLQGISDK----LDGVKVVYVCS 152

Query: 157 PGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLG 216
           P NP G + + Q  + +    R   I+V  +         S            +    L 
Sbjct: 153 PNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLAI----LR 208

Query: 217 SISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETN 276
           ++SK + + G R G+ + ++    L            + A     T +     + +    
Sbjct: 209 TLSKAFALAGLRCGFTLANEEVINLLM---------KVIAPYPLSTPVADIAAQALSPQG 259

Query: 277 EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCL 336
                + +  +    +     +KEIPC+   V      +++                   
Sbjct: 260 IVAMRERVAQIIAEREYLIAALKEIPCVEQ-VFDSETNYILA--------RFKASSAVFK 310

Query: 337 KLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAF 379
            L  +  ++    +   +   LRI         +  ++ ++A 
Sbjct: 311 SLWDQGIILRDQNKQPSLSGCLRITVGT-REESQRVIDALRAE 352

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} Length = 355

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

 Score = 50.9 bits (120), Expect = 9e-08
 Identities = 53/351 (15%), Positives = 113/351 (32%), Gaps = 40/351 (11%)

Query: 30  AEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEIS 89
            + A++D L       Y P        + +A +      +++    +    G  +   I 
Sbjct: 40  VKRALIDNLDCIER--Y-PDADYFHLHQALARH------HQVPASWI--LAGNGETESIF 88

Query: 90  LSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENT 149
                      +I  PG+  Y      + +  E R + L     W++    +EAL  +  
Sbjct: 89  TVASGLKPRRAMIVTPGFAEYGRA--LAQSGCEIRRWSLREADGWQLTDAILEALTPDLD 146

Query: 150 VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSI 209
              +                     R       +++ +   +   F       +      
Sbjct: 147 CLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFID---FIPHETGFIPALKDN 203

Query: 210 VPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVP 269
             +  L S++K + +PG RLG+LV SD   + +             AA      +Q    
Sbjct: 204 PHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMPWSVNALAALAGEVALQ---- 259

Query: 270 RIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIG 329
                 + A+       L+E     Y+ + ++P +T  V P  A +++++          
Sbjct: 260 ------DSAWQQATWHWLREEGARFYQALCQLPLLT--VYPGRANYLLLRCE-------R 304

Query: 330 DDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFA--AEPATLEDGLERI 376
           +D++   +L   + ++I            + R+A    A+   L   L  +
Sbjct: 305 EDIDLQRRLL-TQRILIRSCANYPGLDSRYYRVAIRSAAQNERLLAALRNV 354

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

 Score = 47.6 bits (112), Expect = 1e-06
 Identities = 34/223 (15%), Positives = 75/223 (33%), Gaps = 24/223 (10%)

Query: 39  RTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISL----SVLA 94
             +H   +     V  AR  IAD +  D      P ++  T G +++  +++    +   
Sbjct: 37  SRSHRFGWQAEEAVDIARNQIADLVGAD------PREIVFTSGATESDNLAIKGAANFYQ 90

Query: 95  RPGANILIPRPGYP-LYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIV 153
           + G +I+  +  +  + +          E  +    P++   +DL  +EA   ++T+ + 
Sbjct: 91  KKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLA--PQRNGIIDLKELEAAMRDDTILVS 148

Query: 154 IINPGNPCGNVFSYQHLQKIAR---------TARNLGIIVIADEVYNHLAFGSTPYVPMG 204
           I++  N  G V     + ++ R           +++G + I            + +   G
Sbjct: 149 IMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYG 208

Query: 205 VFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV 247
             G     +         I      G       +G L     V
Sbjct: 209 PKGIGALYVRRKPR--VRIEAQMHGGGHERGMRSGTLPVHQIV 249

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} Length = 334

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

 Score = 45.5 bits (106), Expect = 6e-06
 Identities = 49/348 (14%), Positives = 102/348 (29%), Gaps = 52/348 (14%)

Query: 32  DAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLS 91
           D V   L +                  I  YL+      LS  +V +  G  + I   + 
Sbjct: 39  DEVFRRLNSDALR-IYYDSPDEELIEKILSYLD---TDFLSKNNVSVGNGADEIIY--VM 92

Query: 92  VLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVA 151
           +L    +    P          A G+         DL   +                   
Sbjct: 93  MLMFDRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRIPEVN-----------VGEGDV 141

Query: 152 IVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVP 211
           + I NP NP G+VF  + +++I +T      + + +  Y            +        
Sbjct: 142 VFIPNPNNPTGHVFEREEIERILKTGA---FVALDEAYYEF-----HGESYVDFLKKYEN 193

Query: 212 VITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRI 271
           +  + + SK + +   R+G++V S+             I               + +   
Sbjct: 194 LAVIRTFSKAFSLAAQRVGYVVASEKF-----------IDAYNRVRLPFNVSYVSQMFAK 242

Query: 272 VDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDD 331
           V   +   F +    + E  +     ++E+      +      FV V +         ++
Sbjct: 243 VALDHREIFEERTKFIVEERERMKSALREMGY---RITDSRGNFVFVFME-------KEE 292

Query: 332 LEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAF 379
            E  L+  + ++V +        +  +RI         +  L  ++ F
Sbjct: 293 KERLLEHLRTKNVAV-----RSFREGVRITIGK-REENDMILRELEVF 334

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

 Score = 40.5 bits (94), Expect = 3e-04
 Identities = 46/248 (18%), Positives = 78/248 (31%), Gaps = 42/248 (16%)

Query: 142 EALADENTVAIVIINPGNPCGNVFSY--QHLQKIARTARNLGIIVIADEVYNHLAFGSTP 199
           E L D N V   I+ P      V      +LQ +    +   ++ +ADEV      G T 
Sbjct: 180 EELKDPN-VCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEV--QTGLGRTG 236

Query: 200 YVPMGVFGSIVP-VITLG-SISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAA 257
            +      ++ P VI LG ++S         L                  D I   +   
Sbjct: 237 KLLCVHHYNVKPDVILLGKALSGGHYPISAVLAN----------------DDIMLVIKPG 280

Query: 258 SHPVTF------IQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ 311
            H  T+          V  +    NE        L     +     +K+   +   V+ +
Sbjct: 281 EHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRD-VRGK 339

Query: 312 GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIA--FAAEPATL 369
           G +       +    ++ + L+ CLKL KE  +I            +R+          L
Sbjct: 340 GLLCA-----IEFKNELVNVLDICLKL-KENGLITRDVH----DKTIRLTPPLCITKEQL 389

Query: 370 EDGLERIK 377
           ++  E I 
Sbjct: 390 DECTEIIV 397

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} Length = 405

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 24/173 (13%)

Query: 32  DAVVDALRTAHYNCYS--------PTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCS 83
           DA  +  R  +   +          T  + + R+  + ++N       S E++    G +
Sbjct: 40  DAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINAR-----SAEELVFVRGTT 94

Query: 84  QAIEISLSVLAR----PGANILIPRPGYP--LYEIHAAGSNNNLEARHYDLLPEKRWEVD 137
           + I +  +         G NI+I +  +   +       +    E R   L P+    + 
Sbjct: 95  EGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPD--GTLQ 152

Query: 138 LDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVY 190
           L+ +  L DE T  + I +  N  G       L ++   A   G  V+ D   
Sbjct: 153 LETLPTLFDEKTRLLAITHVSNVLGT---ENPLAEMITLAHQHGAKVLVDGAQ 202

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} Length = 376

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 28/152 (18%), Positives = 57/152 (37%), Gaps = 16/152 (10%)

Query: 32  DAVVDALRTAHYNCYSP-------TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQ 84
           + ++   R  + N  S         L +  AR  +A  L       +SP +++ T   ++
Sbjct: 19  EEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLG------VSPSEIFFTSCATE 72

Query: 85  AIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLL---PEKRWEVDLDGV 141
           +I   L  +A             P+       +   L  + + +     + R  V L+ +
Sbjct: 73  SINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEEL 132

Query: 142 EALADENTVAIVIINPGNPCGNVFSYQHLQKI 173
           E L DE+T  + I+   N  G +   + + +I
Sbjct: 133 EKLVDEDTFLVSIMAANNEVGTIQPVEDVTRI 164

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

 Score = 37.8 bits (87), Expect = 0.002
 Identities = 45/250 (18%), Positives = 76/250 (30%), Gaps = 39/250 (15%)

Query: 137 DLDGVEALADENTVAIVIINP--GNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLA 194
           D++ ++   DE T A VI+ P  G       + + L+      +  G ++I DE+     
Sbjct: 166 DVEALKRAVDEETAA-VILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEI--QTG 222

Query: 195 FGSTPYVPMGVFGSIVPVITLGS--ISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKG 252
            G T          IVP I   +  +     +    +   V          + F      
Sbjct: 223 MGRTGKRFAFEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTF------ 276

Query: 253 CLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEI--PCITCPVKP 310
                 +P+            E    +         E      E+++ I  P I   V+ 
Sbjct: 277 ----GGNPLAMAAGVAAIRYLERTRLWERAA-----ELGPWFMEKLRAIPSPKIRE-VRG 326

Query: 311 QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIA--FAAEPAT 368
            G M          LE       +  +L KE  V+ L          +R       E   
Sbjct: 327 MGLMVG--------LELKEKAAPYIARLEKEHRVLALQ----AGPTVIRFLPPLVIEKED 374

Query: 369 LEDGLERIKA 378
           LE  +E ++A
Sbjct: 375 LERVVEAVRA 384

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	387
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	100.0
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	100.0
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	100.0
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	100.0
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	100.0
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	100.0
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	100.0
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	100.0
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	100.0
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	100.0
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	100.0
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	100.0
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	100.0
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	100.0
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	100.0
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	100.0
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	100.0
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	100.0
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	100.0
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	100.0
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	100.0
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	100.0
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	100.0
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	100.0
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	100.0
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	100.0
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	100.0
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.96
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.96
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.96
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.95
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.95
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.94
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.94
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.94
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.93
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.93
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.92
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.92
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.9
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.9
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.9
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.89
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.89
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.88
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.88
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.88
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.88
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.87
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.87
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	99.87
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.87
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.87
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.86
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.86
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.86
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.86
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	99.84
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.83
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.83
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.83
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.83
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.82
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.82
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.82
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.82
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.82
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.81
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.81
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.8
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.79
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.79
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.79
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.78
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.78
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.76
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	99.74
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.73
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.71
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.71
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.7
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	99.7
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.64
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.56
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	99.28
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	98.96
d1ofux_	119	Hypothetical protein PA3008 {Pseudomonas aeruginos	93.86
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	86.09

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=100.00  E-value=6.7e-57  Score=416.35  Aligned_cols=359  Identities=21%  Similarity=0.390  Sum_probs=318.4

Q ss_pred             cccccccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCCh
Q 038416            3 ERKGQETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGC   82 (387)
Q Consensus         3 ~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~   82 (387)
                      ++.|++ +++++.|+|    ++++|+.+++++++++..+ ..+|++..|.++||+++++++.+.++..+++++|++|+|+
T Consensus        26 ~~~g~~-vi~l~~G~p----~~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~   99 (388)
T d1j32a_          26 KAEGID-VCSFSAGEP----DFNTPKHIVEAAKAALEQG-KTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGG   99 (388)
T ss_dssp             HTTTCC-CEECCCSSC----SSCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHH
T ss_pred             HHCCCC-eEECCCCCC----CCCCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCH
Confidence            345664 577789887    8999999999999998865 3579998999999999999999999989999999999999


Q ss_pred             HHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCcc
Q 038416           83 SQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCG  162 (387)
Q Consensus        83 ~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG  162 (387)
                      ++++..++.+++++||+|+++.|+|.+|...+.  ..|.+++.++...+++|.+|+++++++++++++++++++||||||
T Consensus       100 ~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~--~~~~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~P~NPTG  177 (388)
T d1j32a_         100 KQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVK--LAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTG  177 (388)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHH--HTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTC
T ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCcHHHHHHHH--HhcCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECCCCCCCC
Confidence            999999999999999999999999999999999  899999999988888899999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC--CccEEEEecCcccccccccceEEEEeeCCCCc
Q 038416          163 NVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS--IVPVITLGSISKRWIVPGWRLGWLVTSDPNGI  240 (387)
Q Consensus       163 ~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~  240 (387)
                      .+++.+++++|+++|+++|++||+||+|..+.+++..+.++.....  .+++++++|+||.|+++|+|+||+++++    
T Consensus       178 ~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~~~~----  253 (388)
T d1j32a_         178 MVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPV----  253 (388)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCH----
T ss_pred             cccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcchhHeEEEEECH----
Confidence            9999999999999999999999999999999988877766655433  2578999999999999999999999876    


Q ss_pred             ccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEe
Q 038416          241 LQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVK  319 (387)
Q Consensus       241 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~  319 (387)
                          ++++.+.+... ....++...|.++...+.. .+.++.+..+.++++++.+.+.|++++++. +..|++|+|+|++
T Consensus       254 ----~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~-~~~p~gg~~l~~~  327 (388)
T d1j32a_         254 ----PLVKAATKIQGHSTSNVCTFAQYGAIAAYEN-SQDCVQEMLAAFAERRRYMLDALNAMPGLE-CPKPDGAFYMFPS  327 (388)
T ss_dssp             ----HHHHHHHHHHHTTTCSCCHHHHHHHHHHHHS-CSHHHHHHHHHHHHHHHHHHHHHHTCTTCB-CCCCCBTTEECCB
T ss_pred             ----HHHHHHHHhhhhccccccHHHHHHHhhcccc-hHHHHHHHHHHHHHHHHHHHHHHHhCCCCE-ecCCCceEEEEEE
Confidence                77777766543 4567778888888777764 357789999999999999999999988888 5589999999998


Q ss_pred             cCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHHh
Q 038416          320 LNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      ++...    .++.++...+++++||.+.||..|+.++++|++++.+++++++++++|+++++.+
T Consensus       328 l~~~~----~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~~~~e~l~~al~rl~~~l~~l  387 (388)
T d1j32a_         328 IAKTG----RSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFLHGI  387 (388)
T ss_dssp             CGGGT----CCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCC----CCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence            87532    2567888899899999999999999999999999989999999999999999875

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.4e-55  Score=405.59  Aligned_cols=353  Identities=22%  Similarity=0.392  Sum_probs=302.9

Q ss_pred             cccccccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCCh
Q 038416            3 ERKGQETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGC   82 (387)
Q Consensus         3 ~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~   82 (387)
                      +.+|++ +++.|.|+|    ++++|+.+++++.+++.++ ..+|++..|.++||+++++++.+.++..+++++|++|+|+
T Consensus        27 ~~~G~~-vi~l~~g~p----~~~~p~~i~~a~~~~~~~~-~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~  100 (382)
T d1b5pa_          27 RRQGVD-LVALTAGEP----DFDTPEHVKEAARRALAQG-KTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGG  100 (382)
T ss_dssp             HHTTCC-CEECCCSSC----SSCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHH
T ss_pred             HhCCCC-eEECCCCCC----CCCCCHHHHHHHHHHHhcC-CcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCH
Confidence            345665 678889988    8999999999999998875 4589999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCcc
Q 038416           83 SQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCG  162 (387)
Q Consensus        83 ~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG  162 (387)
                      ++++..++.+++++||.|+++.|+|.++...++  ..|.+++.+++.+++++.+|+++++++++++++++++++||||||
T Consensus       101 ~~al~~~~~~l~~~gd~vl~~~P~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~P~NPTG  178 (382)
T d1b5pa_         101 SQALFNLFQAILDPGDEVIVLSPYWVSYPEMVR--FAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTG  178 (382)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH--HTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTTC
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCCcHHHHHHHH--HhcCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECCCCCCcc
Confidence            999999999999999999999999999999999  999999999998888899999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCccc
Q 038416          163 NVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQ  242 (387)
Q Consensus       163 ~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~  242 (387)
                      .+++.+++++|+++|++||++||+||+|+++.+++....+...  ..+++++++|+||.|+++|+|+||+++++      
T Consensus       179 ~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~--~~~~~i~~~s~SK~~~~~GlR~G~~~~~~------  250 (382)
T d1b5pa_         179 AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRV--APEHTLTVNGAAKAFAMTGWRIGYACGPK------  250 (382)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGT--CTTTEEEEEESTTTTTCGGGCCEEEECCH------
T ss_pred             hhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHc--CCCCEEEEecchhhccCcHhheEEEEECH------
Confidence            9999999999999999999999999999999988776655433  23679999999999999999999999976      


Q ss_pred             chhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhc--cHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEe
Q 038416          243 NSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDET--NEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVK  319 (387)
Q Consensus       243 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~  319 (387)
                        ++++.+.+... ....++.+.+.++...+...  .+.++....+.++.+++.+.+.++.+ ++. +..|++|+|+|++
T Consensus       251 --~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~-~~~p~gg~~~~~~  326 (382)
T d1b5pa_         251 --EVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLK-AVRPSGAFYVLMD  326 (382)
T ss_dssp             --HHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCC-BCCCSBTTEEEEE
T ss_pred             --HHHHHHHHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhc-CCe-EecCCceEEEeEe
Confidence              77887776543 44566677777766665532  24566677788888898888888887 677 4589999999999


Q ss_pred             cCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHH
Q 038416          320 LNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFC  380 (387)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~  380 (387)
                      ++...    .+...+.+ ++.++||.+.||..|+..+++||+++.++|++++++++|++++
T Consensus       327 ~~~~~----~~~~~~~~-~l~e~gV~v~PG~~F~~~~~iRis~~~~~e~l~~al~rl~~~L  382 (382)
T d1b5pa_         327 TSPIA----PDEVRAAE-RLLEAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARVL  382 (382)
T ss_dssp             CTTTC----SSHHHHHH-HHHHTTEECEESGGGTCTTEEEEECCSCHHHHHHHHHHGGGGC
T ss_pred             CCCCC----CCHHHHHH-HHHHCCEEEEeCcccCCCCeEEEEEcCCHHHHHHHHHHHHHhC
Confidence            86432    13444544 4567799999999999999999999989999999999987753

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=5.4e-54  Score=397.71  Aligned_cols=355  Identities=23%  Similarity=0.420  Sum_probs=308.5

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCC-CCCCCCEEEcCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPY-KLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~-~~~~~~i~~~~g~~~a~~   87 (387)
                      .+++.+.|+|    ++++|+.+++++++++.+. ..+|++..|..+||+++++|+.+..+. ...+++|++|+|+++++.
T Consensus        26 dvi~l~~g~p----~~~~p~~v~~~~~~a~~~~-~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~  100 (388)
T d1gdea_          26 DVISLGIGEP----DFDTPQHIKEYAKEALDKG-LTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFL  100 (388)
T ss_dssp             TCEECCCCSC----CSCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHH
T ss_pred             CeEECCCCCC----CCCCCHHHHHHHHHHHhcC-ccCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHH
Confidence            4578889887    8999999999999998865 458999999999999999999875543 446678999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      .++.+++++||+|+++.|+|..|...+.  ..|.+++.+++..+++|.+|+++|+++++++++++++++||||||.+++.
T Consensus       101 ~~~~~l~~~gd~vlv~~P~y~~~~~~~~--~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~P~NPtG~~~s~  178 (388)
T d1gdea_         101 MGLSAFLKDGEEVLIPTPAFVSYAPAVI--LAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTK  178 (388)
T ss_dssp             HHHTTTCCTTCEEEEEESCCTTHHHHHH--HHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCH
T ss_pred             HHHHHhcCCCCEEEECCCCcHHHHHHHH--HcCCEEEEeecccccCCCCCHHHHHHhCccCCeEEEECCCcCCCCCcCCH
Confidence            9999999999999999999999999999  99999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      +++++|+++|++++++||+||+|.++.+.+....++..+.. .+++++++||||.|+++|+|+||+++++        ++
T Consensus       179 ~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~ii~~~--------~~  250 (388)
T d1gdea_         179 KDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPS--------WI  250 (388)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCH--------HH
T ss_pred             HHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccEEEEEeec--------cc
Confidence            99999999999999999999999999888777766666554 4689999999999999999999999976        67


Q ss_pred             HHHHHhhhh-ccCCcchHHHHHHHHHhhhcc-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccc
Q 038416          247 VDSIKGCLN-AASHPVTFIQAAVPRIVDETN-EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSM  324 (387)
Q Consensus       247 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~  324 (387)
                      ++.+..... ....++.+.+.++..++.+.. ..++.+..+.+.+++..+.+.+... ++. +..|++|+|+|++++...
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~p~gg~fl~~~l~~~~  328 (388)
T d1gdea_         251 IERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLP-TVKPKGAFYIFPRIRDTG  328 (388)
T ss_dssp             HHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCC-CCCCCBTTEECCBCGGGT
T ss_pred             hhhhhhccccccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhc-ccc-ccCCCceEEEEEECCCCC
Confidence            777776643 456677788888888887533 3556777788888888899999887 566 448999999999987532


Q ss_pred             ccCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          325 LEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       325 ~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                          .++.+++..+++++||.+.||..|+.  ++++||+++.+++++++++++|++++++++
T Consensus       329 ----~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~~~~e~l~~al~rL~~~l~e~k  386 (388)
T d1gdea_         329 ----LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLKERK  386 (388)
T ss_dssp             ----CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             ----CCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHhcC
Confidence                25778888888999999999999875  689999999889999999999999999875

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=6.6e-54  Score=399.95  Aligned_cols=375  Identities=31%  Similarity=0.564  Sum_probs=319.4

Q ss_pred             cccccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcC------CCCCCCCCEEE
Q 038416            5 KGQETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDL------PYKLSPEDVYL   78 (387)
Q Consensus         5 ~g~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~------~~~~~~~~i~~   78 (387)
                      +..+.+++++.|+|...++++.++.+.+++++.+......+|++..|.++||+++|+|+.+++      +..+++++|++
T Consensus        27 ~~~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~i  106 (412)
T d1bw0a_          27 PSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVL  106 (412)
T ss_dssp             CSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEE
T ss_pred             CCCCCcEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEE
Confidence            344567899999987777777889999999998887666789999999999999999998765      34577899999


Q ss_pred             cCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCC
Q 038416           79 TLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPG  158 (387)
Q Consensus        79 ~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~  158 (387)
                      |+|+++++..++.+++++||+|++++|+|..|...++  ..|.+++.+++.+++++..+++++++...+.++++++++|+
T Consensus       107 t~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~--~~G~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~l~np~  184 (412)
T d1bw0a_         107 CSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCK--AYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPS  184 (412)
T ss_dssp             ESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH--HTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSC
T ss_pred             ecccccchhhhhhhhhccccceeeeeccchhhhhhhh--ccCccccccccccccccchhhHHHHhhhhcccccccccccc
Confidence            9999999999999999999999999999999999999  99999999999888888999999999999999999999999


Q ss_pred             CCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccc----cccCCCccEEEEecCcccccccccceEEEEe
Q 038416          159 NPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPM----GVFGSIVPVITLGSISKRWIVPGWRLGWLVT  234 (387)
Q Consensus       159 nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~  234 (387)
                      ||||.+++.+++++|+++|++++++||+||+|.++.|++....+.    ..++...+++++.|+||.|+++|+|+||+++
T Consensus       185 NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~RvG~~~~  264 (412)
T d1bw0a_         185 NPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLY  264 (412)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEE
T ss_pred             ccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCccCCCCcccccc
Confidence            999999999999999999999999999999999999887554332    2234445689999999999999999999999


Q ss_pred             eCCCCcccchhHHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceE
Q 038416          235 SDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAM  314 (387)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~  314 (387)
                      +++.  ...+..+............++...+..+...+....++++.+..+++.++++.+.+.|.+.+++. +..|.+|+
T Consensus       265 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~-~~~p~gg~  341 (412)
T d1bw0a_         265 VDPH--GNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLA-PTMPRGAM  341 (412)
T ss_dssp             ECTT--CSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEE-ECCCCBTT
T ss_pred             cchh--hcchhhhhhhccccccccCCchhhhhhcccccccccccccccccchhHHHHHHHHHHHHHhcCce-ecCCCCce
Confidence            7632  11233444444443334455566666666665555678899999999999999999998877888 44899999


Q ss_pred             EEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          315 FVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      |+|++++.....+..++.+++.++++++||.+.||..|+.++++||+++.+++++++++++|+++++++.
T Consensus       342 ~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis~~~~~e~l~eal~Rl~~~l~~~~  411 (412)
T d1bw0a_         342 YLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYREAVERIKAFCQRHA  411 (412)
T ss_dssp             EEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHHHHB
T ss_pred             EEEEeCChhhcCCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEcCCHHHHHHHHHHHHHHHHhcC
Confidence            9999988665555557889999999999999999999999999999999999999999999999998875

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=2.3e-54  Score=400.31  Aligned_cols=367  Identities=28%  Similarity=0.466  Sum_probs=313.3

Q ss_pred             ccccccccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCC
Q 038416            2 SERKGQETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLG   81 (387)
Q Consensus         2 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g   81 (387)
                      ++.+|++ +++++.|+| ..++|++|+.+++++.+++... ..+|++..|..+||+++++++.+++|..+++++|++|+|
T Consensus        25 l~~~G~~-vi~l~~G~P-~~~df~~p~~i~~a~~~a~~~~-~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G  101 (395)
T d1xi9a_          25 LEKKGIK-VIRLNIGDP-VKFDFQPPEHMKEAYCKAIKEG-HNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAA  101 (395)
T ss_dssp             HHHTTCC-CEECCCCCG-GGTTCCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESH
T ss_pred             HHHCCCC-eEECCCCCC-CCCCCCCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccc
Confidence            3446665 677789998 4448999999999999999765 457999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCc
Q 038416           82 CSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPC  161 (387)
Q Consensus        82 ~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~npt  161 (387)
                      +++++..++.+++.+||+|++++|+|+.+...++  ..|.+++.++...++++.+|++++++.+.++++++++++|||||
T Consensus       102 ~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~~~~--~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~v~l~~P~NPT  179 (395)
T d1xi9a_         102 VTEALQLIFGALLDPGDEILVPGPSYPPYTGLVK--FYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPT  179 (395)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH--HTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTT
T ss_pred             cchhhhhhhhhhcCCCCEEEEcCCccccchhhhh--hcCCEEEEEeccccccccchHHHHHHhhcccccEEEecCCCCCc
Confidence            9999999999999999999999999999999999  99999999998878889999999999999999999999999999


Q ss_pred             cccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcc
Q 038416          162 GNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGIL  241 (387)
Q Consensus       162 G~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~  241 (387)
                      |.+++.+++++|+++|+++++++|.|++|.++.+++.... ...+...++++++.||||.|+++|+|+||+++.++....
T Consensus       180 G~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~vi~~~S~SK~~~~~GlRvG~~~~~~~~~~~  258 (395)
T d1xi9a_         180 GALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHIS-PGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKL  258 (395)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCC-HHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTT
T ss_pred             cchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccc-hhhcCCCCCEEEEeCcchhcccchhhcEeeEecCHHHHH
Confidence            9999999999999999999999999999999888764433 334455568999999999999999999999876543221


Q ss_pred             cchhHHHHHHh-hhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEec
Q 038416          242 QNSGFVDSIKG-CLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKL  320 (387)
Q Consensus       242 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~  320 (387)
                         ..+.+... .......++.++|.++..++.. .+.++.+..+.++++++.+.+.|++++++. +..|++|+|+|+++
T Consensus       259 ---~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~p~gg~~~~~~l  333 (395)
T d1xi9a_         259 ---SEVREAIDRLARIRLCPNTPAQFAAIAGLTG-PMDYLKEYMKKLKERRDYIYKRLNEIPGIS-TTKPQGAFYIFPKI  333 (395)
T ss_dssp             ---HHHHHHHHHHHHHTCCSCSHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHTSTTEE-CCCCCBSSEECCEE
T ss_pred             ---HHHHHHHHHhhcCCCCcCHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHhCCCce-ecCCCeeEEEeEEC
Confidence               12222222 2234566788889888888874 357889999999999999999999987666 55899999999988


Q ss_pred             CcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHHH
Q 038416          321 NVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       321 ~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~~  382 (387)
                      +....   .++.+++..+++++||.+.||..|+.  .+++||+++.+++++++++++|++++++
T Consensus       334 ~~~~~---~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~~~~e~l~eal~rl~~~l~e  394 (395)
T d1xi9a_         334 EVGPW---KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFMKE  394 (395)
T ss_dssp             CSCSC---SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCC---CCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence            75321   35778889999999999999999976  6799999998999999999999999875

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=7.6e-52  Score=381.41  Aligned_cols=349  Identities=24%  Similarity=0.415  Sum_probs=302.9

Q ss_pred             ccccccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChH
Q 038416            4 RKGQETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCS   83 (387)
Q Consensus         4 ~~g~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~   83 (387)
                      ++|++ +++.+.|+|    ++++|+.+++++++.+.++. .+|++..|..+||+++++++...++...++++|++|+|++
T Consensus        25 ~~G~~-vI~l~~G~p----~~~~p~~i~~~~~~~~~~~~-~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~   98 (375)
T d1o4sa_          25 KKGED-VINLTAGEP----DFPTPEPVVEEAVRFLQKGE-VKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAK   98 (375)
T ss_dssp             HTTCC-CEECCCSSC----SSCCCHHHHHHHHHHHTTCC-CCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHH
T ss_pred             HCCCC-eEECCCcCC----CCCCCHHHHHHHHHHHhcCC-cCCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHH
Confidence            35655 788889988    88999999999999987653 5799999999999999999998888889999999999999


Q ss_pred             HHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccc
Q 038416           84 QAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGN  163 (387)
Q Consensus        84 ~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~  163 (387)
                      +++..++.+++++||.|+++.|+|+.+.....  ..+.....++...++++.++.+.++....++++++++++|+||||.
T Consensus        99 ~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPTG~  176 (375)
T d1o4sa_          99 QALFNAFMALLDPGDEVIVFSPVWVSYIPQII--LAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGV  176 (375)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH--HTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCC
T ss_pred             HHHHHHHHHHhCCCCEEEEccCccccchhhhh--ccccccccccccccccccchhHHHHHhhccCccEEEEeCCCCCccC
Confidence            99999999999999999999999999999999  8999999988888888899999999988889999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccc
Q 038416          164 VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQN  243 (387)
Q Consensus       164 ~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~  243 (387)
                      +++.+++++|+++|++|+++||+||+|..+.++......+...+..+++++++|+||.|+++|+|+||+++++       
T Consensus       177 ~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~~~-------  249 (375)
T d1o4sa_         177 VYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSE-------  249 (375)
T ss_dssp             CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCH-------
T ss_pred             CCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCccccccccccc-------
Confidence            9999999999999999999999999999988876666555555667899999999999999999999999976       


Q ss_pred             hhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCc
Q 038416          244 SGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNV  322 (387)
Q Consensus       244 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~  322 (387)
                       +.++.+..... .........+......+..    +.....+.+.++++.+.+.|+++ ++. +..|++|+|+|++++.
T Consensus       250 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~r~~~~~~~l~~~-g~~-~~~p~gg~f~~~~~~~  322 (375)
T d1o4sa_         250 -KVATAVSKIQSHTTSCINTVAQYAALKALEV----DNSYMVQTFKERKNFVVERLKKM-GVK-FVEPEGAFYLFFKVRG  322 (375)
T ss_dssp             -HHHHHHHHHHHHHTCSCCHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHT-TCC-CCCCSBSSEEEEECSS
T ss_pred             -cchhhhhhhhccccccccccchhhhhhhccc----chhhhHHHHHHHHHHHHHHHHhc-Cce-EecCCccEEEEEECCC
Confidence             67776766543 3444555556555555443    23445667888888888999888 788 4589999999999874


Q ss_pred             ccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHHHHH
Q 038416          323 SMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       323 ~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~~~~  381 (387)
                             ++.+++..+++++||.+.||..|+.++++||+++.+++++++++++|++++.
T Consensus       323 -------~~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~~~~~e~l~~al~rl~~~l~  374 (375)
T d1o4sa_         323 -------DDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFLN  374 (375)
T ss_dssp             -------CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred             -------CHHHHHHHHHHhCCEEEEEccccCCCCeEEEEEcCCHHHHHHHHHHHHHHhc
Confidence                   5678889999999999999999999999999999899999999999998874

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=100.00  E-value=8.3e-51  Score=376.46  Aligned_cols=358  Identities=16%  Similarity=0.229  Sum_probs=294.5

Q ss_pred             cccccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHH
Q 038416            5 KGQETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQ   84 (387)
Q Consensus         5 ~g~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~   84 (387)
                      .|++ ++++++|+|    |||+|+.+++++.+++.++. .+|+.  +.++||+++++|+++++|..+++++|++|+|+++
T Consensus        29 ~g~~-vi~l~~g~p----df~~p~~v~~al~~~~~~~~-~~Y~~--g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~  100 (394)
T d1c7na_          29 VGNE-VVPLSVADM----EFKNPPELIEGLKKYLDETV-LGYTG--PTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVP  100 (394)
T ss_dssp             CCTT-CCCCCSSSC----SSCCCHHHHHHHHHHHHHCC-CSSBC--CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHH
T ss_pred             cCCC-eEEccCCCC----CCCCCHHHHHHHHHHHhCCC-cCCCC--CCHHHHHHHHHHHHHhcCCCCCCcceEeeccchh
Confidence            3444 677889988    99999999999999988653 47764  6789999999999999998999999999999999


Q ss_pred             HHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCC-CCCccCChhhHHHhh-ccCceEEEEeCCCCCcc
Q 038416           85 AIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLP-EKRWEVDLDGVEALA-DENTVAIVIINPGNPCG  162 (387)
Q Consensus        85 a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~-~~~~~~v~l~~p~nptG  162 (387)
                      ++..++++++++||.|+++.|.|+++.....  ..|...+.++... +..+.+|.+.++.++ +++++++++++||||||
T Consensus       101 al~~~~~~~~~pgd~vi~~~p~~~~~~~~~~--~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~NPTG  178 (394)
T d1c7na_         101 AVFNAVREFTKPGDGVIIITPVYYPFFMAIK--NQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVG  178 (394)
T ss_dssp             HHHHHHHHHCCTTCEEEECSSCCTHHHHHHH--TTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTT
T ss_pred             hhhhhhccccccccccccccCcccchhhHHh--hhhhcccccccccccccccchhhhhhhhhccccceEEEecccccccc
Confidence            9999999999999999999999999999999  9999888877653 344678888888766 45799999999999999


Q ss_pred             ccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccC--CCccEEEEecCcccccccccceEEEEeeCCCCc
Q 038416          163 NVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFG--SIVPVITLGSISKRWIVPGWRLGWLVTSDPNGI  240 (387)
Q Consensus       163 ~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~  240 (387)
                      .+++.+++++|+++|++++++||+||+|.++.+++....+.....  ..++++++.|+||.|+++|+|+||+++++    
T Consensus       179 ~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~----  254 (394)
T d1c7na_         179 RVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKN----  254 (394)
T ss_dssp             BCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCC----
T ss_pred             eeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccccccccccccccccC----
Confidence            999999999999999999999999999999998876555433322  23578999999999999999999999975    


Q ss_pred             ccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCCceEEEEE
Q 038416          241 LQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE-IPCITCPVKPQGAMFVMV  318 (387)
Q Consensus       241 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~g~~~~~  318 (387)
                         +.+.+.+..... ....+....+.++........+.+..+..+.++++++.+.+.++. .+++. +..|++++|+|+
T Consensus       255 ---~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~p~g~~~~~~  330 (394)
T d1c7na_         255 ---PDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIK-APLIEGTYLQWI  330 (394)
T ss_dssp             ---HHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSB-CCCCSBSSEEEE
T ss_pred             ---hhhhhhhhhhhhhccccccccccchhhhhhhcchhhhhcccccccchhhhhhhhhhhcccccee-ecCCCceeEEEE
Confidence               246666665543 223333333333333333334677888888888889888888876 45777 447899999999


Q ss_pred             ecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          319 KLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      +++...    .++.+++..|++++||.+.||..|+.  .+++||+++.+++++++++++|++++++++
T Consensus       331 ~~~~~~----~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~i~eal~rl~~~l~~Lk  394 (394)
T d1c7na_         331 DFRALK----MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLK  394 (394)
T ss_dssp             ECGGGC----CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             ECCCCC----CCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence            987532    26778889999999999999999975  579999999889999999999999999874

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=100.00  E-value=1.4e-50  Score=377.89  Aligned_cols=359  Identities=22%  Similarity=0.360  Sum_probs=305.4

Q ss_pred             cccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCC--CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCC-CCEEEcCChH
Q 038416            7 QETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTA--HYNCYSPTLGVPSARRGIADYLNRDLPYKLSP-EDVYLTLGCS   83 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~-~~i~~~~g~~   83 (387)
                      +...++++.|+|    ++++|+.+++++++++.+.  ...+|++..|.++||++||+|+.+++|..+.+ ++|++|+|++
T Consensus        25 ~~~~I~L~~G~P----d~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~  100 (418)
T d2r5ea1          25 QYKPLNLGQGFP----DYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAY  100 (418)
T ss_dssp             HHCCEECSSSCC----SSCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHH
T ss_pred             CCCCEEccCCCC----CCCCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCc
Confidence            345688999987    8999999999999998764  23479999999999999999999988888774 8999999999


Q ss_pred             HHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCC--------CccCChhhHHHhhccCceEEEEe
Q 038416           84 QAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEK--------RWEVDLDGVEALADENTVAIVII  155 (387)
Q Consensus        84 ~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~v~l~  155 (387)
                      +|+..++.+++++||.|+++.|+|+.+...+.  ..|.+++.+++.++.        .+..+++++.+...+++++++++
T Consensus       101 ~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  178 (418)
T d2r5ea1         101 EALYATIQGHVDEGDEVIIIEPFFDCYEPMVK--AAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIIN  178 (418)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH--HTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCTTEEEEEEE
T ss_pred             hhhhhhhhhccccccceeccccccchhhHHHH--HcCCeEEEEEecccccccchhhhhhhhhHHHHhhhhhccccceecC
Confidence            99999999999999999999999999999999  999999999886543        35678888888888899999999


Q ss_pred             CCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccC-CCccEEEEecCcccccccccceEEEEe
Q 038416          156 NPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFG-SIVPVITLGSISKRWIVPGWRLGWLVT  234 (387)
Q Consensus       156 ~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~s~sK~~~~~g~r~G~i~~  234 (387)
                      +||||||.+++.+++++|+++|+++++++|+||+|..+.+++....++..+. ...+++++.|+||.++++|+|+||+++
T Consensus       179 ~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~  258 (418)
T d2r5ea1         179 TPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYG  258 (418)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEES
T ss_pred             CcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCCcccccccc
Confidence            9999999999999999999999999999999999999998876665554443 356899999999999999999999999


Q ss_pred             eCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhc------cHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 038416          235 SDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDET------NEAFFAKIIGLLKETADICYERIKEIPCITCP  307 (387)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  307 (387)
                      ++        ++++.+.+... .....+.+.|.++...+...      .+.++.+..+.++.+++.+.+.|+++ ++. +
T Consensus       259 ~~--------~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~-~  328 (418)
T d2r5ea1         259 PE--------ALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-GMN-P  328 (418)
T ss_dssp             CH--------HHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHT-TCE-E
T ss_pred             cc--------hhhhhhhhcccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhhc-CCc-c
Confidence            76        78888877653 45667777787776665431      24678889999999999999999998 788 5


Q ss_pred             CCCCceEEEEEecCccc-------ccCCCcHHHHHHHHHHhcCeEEEcCCccCC-------CCeEEEEeeCChHhHHHHH
Q 038416          308 VKPQGAMFVMVKLNVSM-------LEDIGDDLEFCLKLAKEESVIILPGRTVGM-------KNWLRIAFAAEPATLEDGL  373 (387)
Q Consensus       308 ~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-------~~~~Ri~~~~~~e~~~~~~  373 (387)
                      ..|++|+|+|++++...       .....++.+++..+++++||.+.||..|+.       .++||||++.++|++++++
T Consensus       329 ~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~~~~~e~l~~a~  408 (418)
T d2r5ea1         329 TVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAA  408 (418)
T ss_dssp             EECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEECCSCHHHHHHHH
T ss_pred             cCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEEecCCHHHHHHHH
Confidence            58999999999986421       112235678899999999999999998865       3789999988999999999


Q ss_pred             HHHHHHHH
Q 038416          374 ERIKAFCQ  381 (387)
Q Consensus       374 ~~l~~~~~  381 (387)
                      ++|++.+.
T Consensus       409 ~rl~~~lg  416 (418)
T d2r5ea1         409 EILRKWKG  416 (418)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            99988763

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.3e-49  Score=364.56  Aligned_cols=352  Identities=17%  Similarity=0.224  Sum_probs=290.0

Q ss_pred             cCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHH
Q 038416           11 HSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISL   90 (387)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~   90 (387)
                      +..|+|+|    |||+|+.+.+++++.+..+. .+|++..| .++|+++++++.++++..+++++|++|+|+++++..++
T Consensus         2 ~~~~~~~~----df~~p~~i~eal~~~~~~~~-~~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~   75 (361)
T d1d2fa_           2 LPFTISDM----DFATAPCIIEALNQRLMHGV-FGYSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELI   75 (361)
T ss_dssp             EECCSSSC----SSCCCHHHHHHHHHHHTTCC-CCCCCSCC-HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHH
T ss_pred             cCcCCCCC----CCCCCHHHHHHHHHHHhCCC-CCCCCCCC-HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHh
Confidence            46788888    99999999999999987764 47988777 78999999999999999999999999999999999999


Q ss_pred             HhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCC-CCccCChhhHHHhhc-cCceEEEEeCCCCCccccCCHH
Q 038416           91 SVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPE-KRWEVDLDGVEALAD-ENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        91 ~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      .+++++||+|++++|+|.++...+.  ..|.+++.++.... +++.+|++.+++.+. ++++++++++|+||||.+++.+
T Consensus        76 ~~l~~~gd~Vlv~~P~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~  153 (361)
T d1d2fa_          76 RQWSETGEGVVIHTPAYDAFYKAIE--GNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCD  153 (361)
T ss_dssp             HHSSCTTCEEEEEESCCHHHHHHHH--HTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTT
T ss_pred             hhccccccccccccccccchhHHHH--hhcceEEeecccccccccccccccchhhcccCCceeEEecccccccccccchh
Confidence            9999999999999999999999999  89999988887543 456789999999874 5789999999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD  248 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~  248 (387)
                      ++++|+++|+++|+++|+|++|+++.+++....++.... .++++++.|+||.++++|+|+||++.+.+       ...+
T Consensus       154 ~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-~~~~v~~~s~SK~~~~~g~R~g~~~~~~~-------~~~~  225 (361)
T d1d2fa_         154 ELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVA-RGDWALLTSGSKSFNIPALTGAYGIIENS-------SSRD  225 (361)
T ss_dssp             HHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTC-CSSEEEEECSHHHHTCGGGCCEEEEECSH-------HHHH
T ss_pred             hhhhhhhhhhhhheeeeeccccccccccccccccccccc-ccccccccccccccccccccceeeecchh-------HHHH
Confidence            999999999999999999999999998876666665554 35788999999999999999999987641       2223


Q ss_pred             HHH-hhhh--ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCCceEEEEEecCccc
Q 038416          249 SIK-GCLN--AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKE-IPCITCPVKPQGAMFVMVKLNVSM  324 (387)
Q Consensus       249 ~~~-~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~g~~~~~~~~~~~  324 (387)
                      ... ....  ...+++...+.+....+. ....+.++....++++++.+.+.+.. ++++. +..|++|+|+|++++...
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~p~gg~~~~~~l~~~~  303 (361)
T d1d2fa_         226 AYLSALKGRDGLSSPSVLALTAHIAAYQ-QGAPWLDALRIYLKDNLTYIADKMNAAFPELN-WQIPQSTYLAWLDLRPLN  303 (361)
T ss_dssp             HHHHHHHTTSCCCSCCHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-CCCCSBCSEEEEECGGGC
T ss_pred             HHhhhcccccccccchhhhHHHHHHHhh-ccchhhhcccccchhhHHHHHHHhhhhccccc-ccccCceeEEEEEccCCC
Confidence            322 2222  122333444444333333 34566777888888888888777665 55777 448999999999886432


Q ss_pred             ccCCCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          325 LEDIGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       325 ~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                          .++.+++.++++++||.+.||..|+.  .+++|||++.+++++++++++|+++++++|
T Consensus       304 ----~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~~~~e~l~~al~rl~~~l~~lr  361 (361)
T d1d2fa_         304 ----IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAVR  361 (361)
T ss_dssp             ----CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             ----CCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHHhcC
Confidence                26788999999999999999999875  578999999899999999999999999875

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-50  Score=372.37  Aligned_cols=356  Identities=21%  Similarity=0.381  Sum_probs=304.5

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCC-CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCC-CCEEEcCChHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAH-YNCYSPTLGVPSARRGIADYLNRDLPYKLSP-EDVYLTLGCSQAI   86 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~-~~i~~~~g~~~a~   86 (387)
                      .+++.+.|.|    ++++|+.+.+++++++.+.. ..+|++..|..+||+++++++++++|..+++ ++|++|+|+++++
T Consensus        26 dvI~l~~G~p----~~~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al  101 (418)
T d1w7la_          26 DVVNLGQGFP----DFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGAL  101 (418)
T ss_dssp             CCEECCCCSC----SSCCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHH
T ss_pred             CCEECCCCCC----CCCCCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHH
Confidence            4688999987    89999999999999998653 3579999999999999999999888877775 6899999999999


Q ss_pred             HHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCC----------CCCccCChhhHHHhhccCceEEEEeC
Q 038416           87 EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLP----------EKRWEVDLDGVEALADENTVAIVIIN  156 (387)
Q Consensus        87 ~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~v~l~~  156 (387)
                      ..++++++++||.|+++.|+|+.|...+.  ..|.+++.++..+          +.++.+|.+++.....+.++++++++
T Consensus       102 ~~~~~~l~~~g~~vlv~~p~~~~y~~~~~--~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~i~~~~  179 (418)
T d1w7la_         102 FTAFQALVDEGDEVIIIEPFFDCYEPMTM--MAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNT  179 (418)
T ss_dssp             HHHHHHHCCTTCEEEEEESCCTTHHHHHH--HTTCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCCTTEEEEEEES
T ss_pred             HHHHHhhccCCceeeccccccchhHHHHH--HcCCEeeccccccccccccccccccCcccchhhhhccccccccceeccC
Confidence            99999999999999999999999999999  9999988877643          24567788888888888999999999


Q ss_pred             CCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEee
Q 038416          157 PGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTS  235 (387)
Q Consensus       157 p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~  235 (387)
                      ||||||..++.+++++|+++|+++++++|+|++|.++.|++....++.++.. .++++++.|+||.++++|+|+||++++
T Consensus       180 p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG~RvG~~v~~  259 (418)
T d1w7la_         180 PNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGP  259 (418)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEECC
T ss_pred             cCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccCCCCcccccccc
Confidence            9999999999999999999999999999999999999998877777666643 468999999999999999999999997


Q ss_pred             CCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhcc------HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 038416          236 DPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETN------EAFFAKIIGLLKETADICYERIKEIPCITCPV  308 (387)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  308 (387)
                      +        ++++.+.+... ...+++.+.|.++..++....      ..++.+..+.++++++.+.+.|+++ ++. +.
T Consensus       260 ~--------~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~-~~  329 (418)
T d1w7la_         260 D--------HIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLK-PL  329 (418)
T ss_dssp             H--------HHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCE-EE
T ss_pred             h--------hhhhhhccccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhc-CCc-cc
Confidence            6        78888877654 456778888888887776532      3567888899999999999999988 788 44


Q ss_pred             CCCceEEEEEecCccc--------ccCCCcHHHHHHHHHHhcCeEEEcCCccCC-------CCeEEEEeeCChHhHHHHH
Q 038416          309 KPQGAMFVMVKLNVSM--------LEDIGDDLEFCLKLAKEESVIILPGRTVGM-------KNWLRIAFAAEPATLEDGL  373 (387)
Q Consensus       309 ~~~~g~~~~~~~~~~~--------~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-------~~~~Ri~~~~~~e~~~~~~  373 (387)
                      .|++|+|+|++++...        ..+..++.+++.++++++||.+.||+.|+.       .+|||||++.+++++++++
T Consensus       330 ~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis~~~~~~~l~~a~  409 (418)
T d1w7la_         330 IPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMD  409 (418)
T ss_dssp             ECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCCHHHHHHHH
T ss_pred             CCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEEEcCCHHHHHHHH
Confidence            8999999999886421        111124578899999999999999998864       4799999988999999999


Q ss_pred             HHHHHHH
Q 038416          374 ERIKAFC  380 (387)
Q Consensus       374 ~~l~~~~  380 (387)
                      ++|++..
T Consensus       410 ~rl~~~~  416 (418)
T d1w7la_         410 EKLRKWK  416 (418)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9997764

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.1e-48  Score=362.08  Aligned_cols=354  Identities=24%  Similarity=0.349  Sum_probs=296.7

Q ss_pred             ccccccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChH
Q 038416            4 RKGQETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCS   83 (387)
Q Consensus         4 ~~g~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~   83 (387)
                      .+|++ +++++.|+|    ++++|+.+.+++.+....  ..+|++..|..+||+++++|+.+++|..+++++|++|+|++
T Consensus        25 ~~g~~-vi~l~~G~p----~~~~p~~~~~al~~~~~~--~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~   97 (389)
T d2gb3a1          25 KRGVR-IHHLNIGQP----DLKTPEVFFERIYENKPE--VVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGS   97 (389)
T ss_dssp             HTTCE-EEECSSCCC----CSCCCTHHHHHHHHTCCS--SCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHH
T ss_pred             HcCCC-EEECCCCCC----CCCCCHHHHHHHHhcCCC--CCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEeccccc
Confidence            35654 577789988    899999999999876543  56899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccc
Q 038416           84 QAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGN  163 (387)
Q Consensus        84 ~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~  163 (387)
                      +++..++.+++++||.|+++.|+|+.+...+.  ..|..+..++.... ++..+.+.+.....++++++++++||||||.
T Consensus        98 ~~l~~~~~~l~~~gd~V~i~~P~y~~~~~~~~--~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~  174 (389)
T d2gb3a1          98 EAILFSFAVIANPGDEILVLEPFYANYNAFAK--IAGVKLIPVTRRME-EGFAIPQNLESFINERTKGIVLSNPCNPTGV  174 (389)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH--HHTCEEEEEECCGG-GTSCCCTTGGGGCCTTEEEEEEESSCTTTCC
T ss_pred             ccccccccccccCCCeEEEeCCCCcccccccc--ccCccccccccccc-cccchhhhhhhhcccCccEEEeCCCCccccc
Confidence            99999999999999999999999999999999  99999888887643 3345556677777889999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccc
Q 038416          164 VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQN  243 (387)
Q Consensus       164 ~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~  243 (387)
                      +++.+++++|+++|++++++||+||+|..+.+++........  ..++++++.|+||.++++|+|+||+++++       
T Consensus       175 ~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~--~~~~~~v~~s~sK~~~~~GlRiG~~~~~~-------  245 (389)
T d2gb3a1         175 VYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSI--ESDKVVVIDSVSKKFSACGARVGCLITRN-------  245 (389)
T ss_dssp             CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGS--CCTTEEEEEESTTTTTCGGGCCEEEECSC-------
T ss_pred             cchHHHHHHHHhhcccCCEEEEEecccccccccccccccccc--ccccccccccccccccCcccceeeeeccc-------
Confidence            999999999999999999999999999999888754444332  33578889999999999999999999875       


Q ss_pred             hhHHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcc
Q 038416          244 SGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVS  323 (387)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~  323 (387)
                      +.+.............++.+.+.++..++. ..+.++++..+.++++++.+.+.|++++... +..|.+|+|+|++++. 
T Consensus       246 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~p~~g~~~~~~lp~-  322 (389)
T d2gb3a1         246 EELISHAMKLAQGRLAPPLLEQIGSVGLLN-LDDSFFDFVRETYRERVETVLKKLEEHGLKR-FTKPSGAFYITAELPV-  322 (389)
T ss_dssp             HHHHHHHHHHHHHSCCCCHHHHHHHHHHHT-CCHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-BCCCSBSSEEEEECSS-
T ss_pred             hhHHHHHhhhhhcccccccccccccccccc-ccchhcccccccccccchhhhhhhhhhcccc-ccCCCceEEEEEeCCC-
Confidence            134444444444455666777777777665 3578889999999999999999999995555 5589999999999874 


Q ss_pred             cccCCCcHHHHHHHHHHh-----cCeEEEcCCccCC-----CCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          324 MLEDIGDDLEFCLKLAKE-----ESVIILPGRTVGM-----KNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       324 ~~~~~~~~~~~~~~ll~~-----~gi~v~~g~~~~~-----~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                           .++.+++..++++     +||.+.||..|+.     .+++||+++.+++++++++++|++++++++
T Consensus       323 -----~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~~~~~~l~~a~~~L~~~lk~f~  388 (389)
T d2gb3a1         323 -----EDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKMFC  388 (389)
T ss_dssp             -----SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             -----CCHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHHHhh
Confidence                 2567788888765     4788999988764     468999999899999999999999999875

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.7e-48  Score=359.35  Aligned_cols=348  Identities=21%  Similarity=0.347  Sum_probs=301.4

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCC-CEEEcCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~g~~~a~~   87 (387)
                      ..++++.|+|    |+++|+.+++++.+++.++ ..+|++..|..+||+++|+++.+.+|....++ +|++|+|+++++.
T Consensus        27 ~~i~l~~G~P----d~~~p~~i~~a~~~~~~~~-~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~  101 (382)
T d1u08a_          27 QAINLSQGFP----DFDGPRYLQERLAHHVAQG-ANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALY  101 (382)
T ss_dssp             TCEECCCSSC----SSCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHH
T ss_pred             CCEEccCCCC----CCCCCHHHHHHHHHHHhcC-CCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHH
Confidence            4578999988    8999999999999999865 45899999999999999999999888777776 5999999999999


Q ss_pred             HHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           88 ISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        88 ~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                      .++.+++++||.|+++.|+|+.+...+.  ..|.....+++. ++++.+|++++++...++++++++++||||||.+++.
T Consensus       102 ~~~~~l~~~gd~vl~~~p~y~~~~~~~~--~~g~~~~~~~~~-~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~v~~~  178 (382)
T d1u08a_         102 AAITALVRNGDEVICFDPSYDSYAPAIA--LSGGIVKRMALQ-PPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQ  178 (382)
T ss_dssp             HHHHHHCCTTCEEEEEESCCTTHHHHHH--HTTCEEEEEECC-TTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCH
T ss_pred             HHHhhcccccceEEEecccccchhhhhh--hccccceecccc-cccccCCHHHHhhhhccCccEEEECCCCccccccccc
Confidence            9999999999999999999999999999  899888877765 4567889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCcccccc-CCCccEEEEecCcccccccccceEEEEeeCCCCcccchhH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF-GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF  246 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  246 (387)
                      +++++|+++|.+++++++.|+.|..+.+.+......... ...++++++.|+||.++++|+|+||+++++        ++
T Consensus       179 ~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~~~--------~~  250 (382)
T d1u08a_         179 ADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPA--------PI  250 (382)
T ss_dssp             HHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCH--------HH
T ss_pred             ccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCcccchhhhccc--------hh
Confidence            999999999999999999999999887765444333222 234578999999999999999999999976        78


Q ss_pred             HHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccc
Q 038416          247 VDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML  325 (387)
Q Consensus       247 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~  325 (387)
                      ++.+..... ...+++.+.|.++..+++.. ++++.+..+.++++++.+.+.+... ++. +..|++|+|+|++++... 
T Consensus       251 ~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~~~~~-g~~-~~~p~gg~~~~~~~~~~~-  326 (382)
T d1u08a_         251 SAEIRKVHQYLTFSVNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILVNALNES-RLE-ILPCEGTYFLLVDYSAVS-  326 (382)
T ss_dssp             HHHHHHHHHHHTSSCCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTSS-SCE-ECCCCBSSEEEEECTTTC-
T ss_pred             HHHHHhhhcccccccccccccccccccccc-hHHHHHHHHHHHhhhhhhhhhhccC-CcE-EecCCceEEEEEecCCCC-
Confidence            888876653 46778889999999998864 5778889999999999999988766 787 458999999999987532 


Q ss_pred             cCCCcHHHHHHHHHHhcCeEEEcCCccCC----CCeEEEEeeCChHhHHHHHHHHHH
Q 038416          326 EDIGDDLEFCLKLAKEESVIILPGRTVGM----KNWLRIAFAAEPATLEDGLERIKA  378 (387)
Q Consensus       326 ~~~~~~~~~~~~ll~~~gi~v~~g~~~~~----~~~~Ri~~~~~~e~~~~~~~~l~~  378 (387)
                        ..++.+++.++++++||.+.||..|+.    .++||||++.++|++++++++|++
T Consensus       327 --~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~~~~e~l~~al~RL~~  381 (382)
T d1u08a_         327 --TLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQ  381 (382)
T ss_dssp             --CSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred             --CCCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEeCCHHHHHHHHHHHhC
Confidence              136788999999999999999999864    368999998889999999999875

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=100.00  E-value=1.5e-46  Score=351.25  Aligned_cols=328  Identities=19%  Similarity=0.348  Sum_probs=269.4

Q ss_pred             CCCCCCCCcHHHHHHHHHHHhhcCCC--CCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccC-CC
Q 038416           44 NCYSPTLGVPSARRGIADYLNRDLPY--KLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSN-NN  120 (387)
Q Consensus        44 ~~y~~~~~~~~lr~~ia~~~~~~~~~--~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~-~g  120 (387)
                      .+|++..|.++||++||+|+.++++.  .+++++|++|+|+++++..++.+++++||.|+++.|+|..+...+.  . .|
T Consensus        77 ~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~--~~~g  154 (428)
T d1iaya_          77 ANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLR--WRTG  154 (428)
T ss_dssp             HHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTT--TTTC
T ss_pred             ccCcCCcchHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhCCCCCEEEEccCCchHHHHHHH--HhcC
Confidence            36999899999999999999998874  4578999999999999999999999999999999999999887666  5 48


Q ss_pred             ceeeeeccCCCCCccCChhhHHHhh------ccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccc
Q 038416          121 LEARHYDLLPEKRWEVDLDGVEALA------DENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLA  194 (387)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~  194 (387)
                      ++++++++...+++.+|++.++.++      .++++++++++||||||.+++.+++++|+++|++||++||+||+|+.+.
T Consensus       155 ~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~  234 (428)
T d1iaya_         155 VQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATV  234 (428)
T ss_dssp             CEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGC
T ss_pred             CeEEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccc
Confidence            8999999988888999999877643      3467889999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcccccc--------CCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhhccCCcchHHHH
Q 038416          195 FGSTPYVPMGVF--------GSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQA  266 (387)
Q Consensus       195 ~~~~~~~~~~~~--------~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (387)
                      |++..+.++.++        ...++++++.|+||.|+++|+|+||+++.+       +.+.+.+..... ....+...+.
T Consensus       235 ~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~-------~~l~~~~~~~~~-~~~~~~~~~~  306 (428)
T d1iaya_         235 FDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFN-------DDVVNCARKMSS-FGLVSTQTQY  306 (428)
T ss_dssp             CSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESC-------HHHHHHHHHHHT-TSCCCHHHHH
T ss_pred             cCcccccccccccchhhccccccceEEEEecCCCcccCCCcccccccccc-------cchhhhhhhhhc-cccccccccc
Confidence            988766654332        234678999999999999999999999864       245555555443 3445566666


Q ss_pred             HHHHHhhhcc--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccccc-CCCcHHHHHHHHHHhcC
Q 038416          267 AVPRIVDETN--EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE-DIGDDLEFCLKLAKEES  343 (387)
Q Consensus       267 ~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~g  343 (387)
                      ++.+.+....  +.++++..+.++++++.+.+.|+.. |+. +..|++|+|+|++++..... ...++.++...+++++|
T Consensus       307 ~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~-gi~-~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~g  384 (428)
T d1iaya_         307 FLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIK-CLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVK  384 (428)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCC-BCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSC
T ss_pred             chhhhhhhhccccccccccccccchhHHHHHHHHHhC-CCE-EecCCcceEEEEECccccccCCCCCHHHHHHHHHHhCC
Confidence            6666555422  4677888888999999999999876 888 44899999999998753221 12234567888889999


Q ss_pred             eEEEcCCccCC--CCeEEEEeeC-ChHhHHHHHHHHHHHHHHh
Q 038416          344 VIILPGRTVGM--KNWLRIAFAA-EPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       344 i~v~~g~~~~~--~~~~Ri~~~~-~~e~~~~~~~~l~~~~~~~  383 (387)
                      |.+.||..|+.  +++|||+++. +++++++++++|++++...
T Consensus       385 V~v~PG~~F~~~~~g~~Ris~a~~~~~~l~~al~Rl~~~l~~~  427 (428)
T d1iaya_         385 LNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGVE  427 (428)
T ss_dssp             EECEEGGGGTCSSSSEEEEECSSSCHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEcchhcCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHhhc
Confidence            99999999875  6899999965 6678999999999998754

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=100.00  E-value=4.5e-47  Score=355.07  Aligned_cols=327  Identities=21%  Similarity=0.364  Sum_probs=271.0

Q ss_pred             CCCCCCCcHHHHHHHHHHHhhcCC--CCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccC-CCc
Q 038416           45 CYSPTLGVPSARRGIADYLNRDLP--YKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSN-NNL  121 (387)
Q Consensus        45 ~y~~~~~~~~lr~~ia~~~~~~~~--~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~-~g~  121 (387)
                      .|++..|.++||+++|+|+.++++  +++++++|++|+|+++++..++.+++++||.|+++.|+|+.+...+.  . .|.
T Consensus        79 ~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~~~--~~~g~  156 (431)
T d1m7ya_          79 LFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLK--WRTGV  156 (431)
T ss_dssp             HCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTT--TTTCC
T ss_pred             CCcCCcCcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHH--HhcCc
Confidence            699989999999999999999876  45678999999999999999999999999999999999998877776  4 578


Q ss_pred             eeeeeccCCCCCccCChhhHHHhhcc------CceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeeccccccccc
Q 038416          122 EARHYDLLPEKRWEVDLDGVEALADE------NTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAF  195 (387)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~  195 (387)
                      +++.+++..++++.+|++.+++++..      ++++++++|||||||.+++.+++++|+++|+++|++||+||+|+.+.|
T Consensus       157 ~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~  236 (431)
T d1m7ya_         157 EIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAF  236 (431)
T ss_dssp             EEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCC
T ss_pred             eeccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeeccccccccc
Confidence            89999998888899999998876642      578899999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccccC----------CCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhhccCCcchHHH
Q 038416          196 GSTPYVPMGVFG----------SIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQ  265 (387)
Q Consensus       196 ~~~~~~~~~~~~----------~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (387)
                      ++..+.++..+.          ..+++++++|+||.|+++|+|+||+++++        +.+.............+...+
T Consensus       237 ~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~--------~~i~~~~~~~~~~~~~~~~~~  308 (431)
T d1m7ya_         237 SSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSND--------DMVVAAATKMSSFGLVSSQTQ  308 (431)
T ss_dssp             SSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESC--------HHHHHHHHHHGGGSCCCHHHH
T ss_pred             CCCCCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccch--------hhhHHHHHHHhcccccccccc
Confidence            876655543321          23579999999999999999999999976        555444443333445556666


Q ss_pred             HHHHHHhhhcc--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccccc-CCCcHHHHHHHHHHhc
Q 038416          266 AAVPRIVDETN--EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE-DIGDDLEFCLKLAKEE  342 (387)
Q Consensus       266 ~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~  342 (387)
                      .++.+.+....  ++++.+..+.++++++.+.+.|++. ++. +..|.+|+|+|++++..... ...++.+++..+++++
T Consensus       309 ~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gi~-~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~  386 (431)
T d1m7ya_         309 HLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GIS-CLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEV  386 (431)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCE-ECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTS
T ss_pred             chhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhcC-CcE-EecCCceeEEEEECccccccCcccCHHHHHHHHHHHC
Confidence            66666655432  4678888899999999999999886 888 44899999999998763221 1224557888899999


Q ss_pred             CeEEEcCCccCC--CCeEEEEeeC-ChHhHHHHHHHHHHHHHHh
Q 038416          343 SVIILPGRTVGM--KNWLRIAFAA-EPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       343 gi~v~~g~~~~~--~~~~Ri~~~~-~~e~~~~~~~~l~~~~~~~  383 (387)
                      ||.+.||..|+.  ++|+||+++. +++++++++++|+++++++
T Consensus       387 gV~v~PG~~F~~~~~~~~Ri~~a~~~e~~l~~al~rL~~~l~~~  430 (431)
T d1m7ya_         387 HLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFVGEY  430 (431)
T ss_dssp             CEECEEGGGGTCSSTTEEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEeccccCCCCCCEEEEEeCcCCHHHHHHHHHHHHHHHHHh
Confidence            999999999876  6899999975 6788999999999999886

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.4e-46  Score=345.19  Aligned_cols=335  Identities=27%  Similarity=0.414  Sum_probs=284.6

Q ss_pred             ccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHH
Q 038416           10 RHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEIS   89 (387)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~   89 (387)
                      .++++.|+|    ++|+|+.+.+++++++..  ...|++..|..+||++||+++      ++++++|++|+|+++++..+
T Consensus        27 ~I~ls~g~p----~~~~p~~i~~al~~~l~~--~~~Y~~~~G~~elr~aiA~~~------~~~~~~Iiit~G~~~al~~~   94 (368)
T d1v2da_          27 AVNLGQGFP----SNPPPPFLLEAVRRALGR--QDQYAPPAGLPALREALAEEF------AVEPESVVVTSGATEALYVL   94 (368)
T ss_dssp             CEECCCCSC----SSCCCHHHHHHHHHHTTT--SCSCCCTTCCHHHHHHHHHHH------TSCGGGEEEESSHHHHHHHH
T ss_pred             CEEecCCCC----CCCCCHHHHHHHHHHhhc--ccCCCCCcCCHHHHHHHHhhc------ccCCcceeeccchHHHHHHH
Confidence            577888887    889999999999998865  357999999999999999999      57899999999999999999


Q ss_pred             HHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCC-CCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           90 LSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLP-EKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        90 ~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      +.+++++||.|+++.|+|..+.....  ..|.+++.++++. .+++.+|++.+++++.++++++++++||||||..++.+
T Consensus        95 ~~~l~~~~d~v~~~~p~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~~~~  172 (368)
T d1v2da_          95 LQSLVGPGDEVVVLEPFFDVYLPDAF--LAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGER  172 (368)
T ss_dssp             HHHHCCTTCEEEEEESCCTTHHHHHH--HTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHH
T ss_pred             hhccccccccccccCCcchhhhhHHH--hcCCccceeccccccccccCCHHHHHHhhccCceEEEEcCCCCcccccCCHH
Confidence            99999999999999999999999999  9999988888753 35678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD  248 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~  248 (387)
                      ++++|+++|++||+++|+|++|..+..........  ....++.+++.|+||.++++|+|+||+++++        ++++
T Consensus       173 ~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~--------~~~~  242 (368)
T d1v2da_         173 ELEAIARLARAHDLFLISDEVYDELYYGERPRRLR--EFAPERTFTVGSAGKRLEATGYRVGWIVGPK--------EFMP  242 (368)
T ss_dssp             HHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHH--HHCTTTEEEEEEHHHHTTCGGGCCEEEECCT--------TTHH
T ss_pred             HHHHHHHHHHHcCCeeeechhhhhhcccccccccc--cccccccceeecccccccccccccccccccc--------cccc
Confidence            99999999999999999999999766554333222  2233567888999999999999999999876        6777


Q ss_pred             HHHhhhh-ccCCcchHHHHHHHHHhhhcc-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccccc
Q 038416          249 SIKGCLN-AASHPVTFIQAAVPRIVDETN-EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLE  326 (387)
Q Consensus       249 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~  326 (387)
                      .+.+... ....++.+.|.++..++.... ..++++..+.++++++.+.+.|+++ ++. +..|++|+|+|++++..   
T Consensus       243 ~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~-~~~p~g~~~~~~~l~~~---  317 (368)
T d1v2da_         243 RLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLR-VYVPEGTYFLMAELPGW---  317 (368)
T ss_dssp             HHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCC-EECCSBSSEEEEECTTC---
T ss_pred             hhhhhhhccccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhc-CcE-EecCCceeEEEEeCCcc---
Confidence            7776653 456778888888887776533 3567888888999999999999998 788 44889999999998631   


Q ss_pred             CCCcHHHHHHHHHHhcCeEEEcCCccCC----CCeEEEEeeCChHhHHHHHHHHHHHH
Q 038416          327 DIGDDLEFCLKLAKEESVIILPGRTVGM----KNWLRIAFAAEPATLEDGLERIKAFC  380 (387)
Q Consensus       327 ~~~~~~~~~~~ll~~~gi~v~~g~~~~~----~~~~Ri~~~~~~e~~~~~~~~l~~~~  380 (387)
                         +.    .++++++||.+.||..|+.    ++++||+++.+++++++++++|++++
T Consensus       318 ---~~----~~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~~~~e~i~~ai~rL~~~l  368 (368)
T d1v2da_         318 ---DA----FRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVV  368 (368)
T ss_dssp             ---CH----HHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred             ---HH----HHHHHhCCEEEEechhhCCCCCCCCEEEEEecCCHHHHHHHHHHHHHhC
Confidence               33    2356788999999998864    57999999888999999999998864

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=100.00  E-value=1.4e-46  Score=349.34  Aligned_cols=358  Identities=22%  Similarity=0.290  Sum_probs=288.8

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCC--CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTA--HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAI   86 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~   86 (387)
                      .++++..|.|..  ...+.+.+.+++.+.+...  ....|++..|.++||+++|+|+.++++..+++++|++|+|+++++
T Consensus        30 ~~i~l~~G~P~~--~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al  107 (403)
T d1wsta1          30 DVISLAGGLPAP--ETFPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQAL  107 (403)
T ss_dssp             SCEECCCCCCCG--GGSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHH
T ss_pred             CcEECCCCCCCc--cccCHHHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchHHH
Confidence            467778888732  2335678888888877643  234799999999999999999999999899999999999999999


Q ss_pred             HHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHH----hhccCceEEEEeCCCCCcc
Q 038416           87 EISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEA----LADENTVAIVIINPGNPCG  162 (387)
Q Consensus        87 ~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~v~l~~p~nptG  162 (387)
                      ..++.+++++||.|++++|+|+.+...+.  ..|.++..++.+....+........+    ..++.+.++++++|+||||
T Consensus       108 ~~~~~~l~~~gd~v~~~~P~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG  185 (403)
T d1wsta1         108 DLIGRVFLNPGDPIVVEAPTYLAAIQAFK--YYDPEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAG  185 (403)
T ss_dssp             HHHHHHHCCTTCEEEEEESCCHHHHHHHH--TTCCEEEEEEEETTEECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTC
T ss_pred             HHHHHHHhhcCCccccCCCcchhhhHHHh--hccccceeEeecccCCccccccccchhhhhccccccccccccccCCCCC
Confidence            99999999999999999999999999999  99999999988654332222222121    2233566778899999999


Q ss_pred             ccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCccc
Q 038416          163 NVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQ  242 (387)
Q Consensus       163 ~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~  242 (387)
                      .+++.+++++|+++|++||++||+||+|.++.+++.+..++...+..+++++++|+||.+ ++|+|+||+++++      
T Consensus       186 ~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~G~RiG~~i~~~------  258 (403)
T d1wsta1         186 VTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKIL-APGFRIGWVAAHP------  258 (403)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTT-CGGGCCEEEEECH------
T ss_pred             ccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCcEEEEcccccee-cCcccccccccch------
Confidence            999999999999999999999999999999999988887877777778999999999997 5999999999976      


Q ss_pred             chhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCCCCCCCceEEEEE
Q 038416          243 NSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDET-NEAFFAKIIGLLKETADICYERIKEI--PCITCPVKPQGAMFVMV  318 (387)
Q Consensus       243 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~g~~~~~  318 (387)
                        ++++.+..... ....++...+.+...++... .+.++.+..+.+.++++.+.+.|.+.  .++. +..|.+|+|+|+
T Consensus       259 --~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~-~~~p~gg~~~~~  335 (403)
T d1wsta1         259 --HLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVE-WTKPEGGMFVRV  335 (403)
T ss_dssp             --HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCE-ECCCSBSSEEEE
T ss_pred             --HHHHHHHHHHhhhccccccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhccCCeE-EeCCCceeEEEE
Confidence              67777766543 44566777777766665543 35667888888889999999988873  2455 558999999999


Q ss_pred             ecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC----CCeEEEEee-CChHhHHHHHHHHHHHHHHhhhc
Q 038416          319 KLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM----KNWLRIAFA-AEPATLEDGLERIKAFCQRHAKK  386 (387)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~----~~~~Ri~~~-~~~e~~~~~~~~l~~~~~~~~~~  386 (387)
                      +++..     .+...+...+ .++||.+.||+.|+.    ++++||+++ .+++++++++++|++++++..++
T Consensus       336 ~~~~~-----~~~~~~~~~l-~~~gV~v~pg~~f~~~~~~~~~iRi~~~~~~~~~l~~al~rl~~~l~~~~k~  402 (403)
T d1wsta1         336 TLPEG-----IDTKLMMERA-VAKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETIKEEMKR  402 (403)
T ss_dssp             ECCTT-----CCTTTTHHHH-HHTTEECEEGGGGSTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ECCCC-----CCHHHHHHHH-HHCCEEEEechhhcCCCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            99753     1344455554 667999999998864    479999997 58899999999999999987653

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.5e-46  Score=349.33  Aligned_cols=356  Identities=19%  Similarity=0.269  Sum_probs=286.0

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCC--CCCCCCCCCCcHHHHHHHHHHHhhcCCCC-CCCCCEEEcCChHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTA--HYNCYSPTLGVPSARRGIADYLNRDLPYK-LSPEDVYLTLGCSQ   84 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~y~~~~~~~~lr~~ia~~~~~~~~~~-~~~~~i~~~~g~~~   84 (387)
                      +..++++.|.|  +++..+.+.+.++++++++..  ....|++..|.++||++|++|+.+++|.. +++++|++|+|+++
T Consensus        38 ~~~I~l~~G~P--d~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~  115 (420)
T d1vp4a_          38 KDAISFGGGVP--DPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQ  115 (420)
T ss_dssp             TTCEECCCCSC--CGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHH
T ss_pred             CCcEecCCcCC--CCccCCHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchhh
Confidence            35677778877  222335577788888877643  23579999999999999999999988865 78999999999999


Q ss_pred             HHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhh---------ccCceEEEEe
Q 038416           85 AIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALA---------DENTVAIVII  155 (387)
Q Consensus        85 a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~v~l~  155 (387)
                      ++..++.+++++||.|+++.|+|..+...++  ..|.++..++.++.   +++++.+...+         .+.+.+++++
T Consensus       116 al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~--~~g~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  190 (420)
T d1vp4a_         116 ALDLIGKLFLDDESYCVLDDPAYLGAINAFR--QYLANFVVVPLEDD---GMDLNVLERKLSEFDKNGKIKQVKFIYVVS  190 (420)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCHHHHHHHH--TTTCEEEEEEEETT---EECHHHHHHHHHHHHHTTCGGGEEEEEEEC
T ss_pred             hHHHHHHhhhccccccccccccccchhHHHH--HHhhhccccccccc---ccccchhhhhhhhhHHHhhccccceeeEec
Confidence            9999999999999999999999999999999  99999999987543   46777665432         1234455678


Q ss_pred             CCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEee
Q 038416          156 NPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTS  235 (387)
Q Consensus       156 ~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~  235 (387)
                      +||||||..++.+++++|+++|+++++++|+||+|.++.+++....+.......+++++++|++|.+ ++|+|+||++++
T Consensus       191 ~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~-~~G~RiG~~~~~  269 (420)
T d1vp4a_         191 NFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVL-APGLRIGMVAGS  269 (420)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTT-CGGGCEEEEECC
T ss_pred             CCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccccccceeEEecccccc-cccccccccccc
Confidence            9999999999999999999999999999999999999999887666666666667899999999995 799999999997


Q ss_pred             CCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhcc-HHHHHHHHHHHHHHHHHHHHHhhc----CCCCCCCCC
Q 038416          236 DPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETN-EAFFAKIIGLLKETADICYERIKE----IPCITCPVK  309 (387)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~  309 (387)
                      +        ++++++.+... ....++...|.++..++.... .+++.+..+.++++++.+.+.|++    ++++. +..
T Consensus       270 ~--------~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~-~~~  340 (420)
T d1vp4a_         270 K--------EFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVK-WVK  340 (420)
T ss_dssp             H--------HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCE-ECC
T ss_pred             c--------hhhhhhhhhhhhccccCchhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhhhhccCCCcE-Eec
Confidence            6        78888877654 445677778888777776543 455666667777777776666654    56787 458


Q ss_pred             CCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC----CCeEEEEee-CChHhHHHHHHHHHHHHHHhh
Q 038416          310 PQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM----KNWLRIAFA-AEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       310 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~----~~~~Ri~~~-~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      |.+|+|+|++++..     .++.++.+. ++++||.+.||..|+.    .+++|||++ .+++++++++++|+++++++.
T Consensus       341 p~gg~f~~~~~~~~-----~d~~~~~~~-l~~~gV~v~PG~~F~~~~~~~~~iRls~~~~~~e~l~~a~~rL~~~l~~~~  414 (420)
T d1vp4a_         341 SEGGLFIWLTLPEG-----FDTWEMFEY-AKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLEYG  414 (420)
T ss_dssp             CSBSSEEEEECCTT-----CCTTTTHHH-HHHHTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEECCCC-----CCHHHHHHH-HHHCCeEEEechhhCCCCCCCCEEEEEeCcCCHHHHHHHHHHHHHHHHHhh
Confidence            99999999999752     144455554 5677999999999875    469999997 478999999999999999987


Q ss_pred             hc
Q 038416          385 KK  386 (387)
Q Consensus       385 ~~  386 (387)
                      ++
T Consensus       415 ~~  416 (420)
T d1vp4a_         415 KE  416 (420)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=8.1e-43  Score=318.38  Aligned_cols=330  Identities=19%  Similarity=0.277  Sum_probs=267.1

Q ss_pred             cccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEI   88 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~   88 (387)
                      ..++++.|.+    .+++|+.+++++.+....  ...|+. .+..+||+.+|+++      ++++++|++++|+++++..
T Consensus        23 ~~idls~~~n----p~~~p~~~~~a~~~~~~~--~~~Yp~-~~~~~Lr~aia~~~------~v~~~~I~~~~g~~~~~~~   89 (355)
T d1lc5a_          23 QLLDFSANIN----PLGMPVSVKRALIDNLDC--IERYPD-ADYFHLHQALARHH------QVPASWILAGNGETESIFT   89 (355)
T ss_dssp             GSEECSSCCC----TTCCCHHHHHHHHHTGGG--GGSCCC-TTCHHHHHHHHHHH------TSCGGGEEEESSHHHHHHH
T ss_pred             heEEccCCCC----CCCCCHHHHHHHHHHHHH--hccCCC-CChHHHHHHHHHHh------CCCHHHEEecccHHHHHHH
Confidence            3566666532    478899999999998764  456865 46789999999999      5788999999999999998


Q ss_pred             HHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           89 SLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        89 ~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                      ++..+.  ++.+++..|.|..|.....  ..+.+++.+++..++++.++ +++++.+.++++++++++||||||..++.+
T Consensus        90 ~~~~~~--~~~~~v~~p~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~v~l~nP~NPtG~~~~~e  164 (355)
T d1lc5a_          90 VASGLK--PRRAMIVTPGFAEYGRALA--QSGCEIRRWSLREADGWQLT-DAILEALTPDLDCLFLCTPNNPTGLLPERP  164 (355)
T ss_dssp             HHHHHC--CSEEEEEESCCTHHHHHHH--HTTCEEEEEECCGGGTTCCC-TTHHHHCCTTCCEEEEESSCTTTCCCCCHH
T ss_pred             HHhhhc--cccccccCCccceeccccc--cccccceeeeeeccCCccce-eeeeeccccccceeeeecccCcccccchhh
Confidence            887764  4556677889988888888  88999999998877777666 556777888999999999999999999999


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhH-H
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGF-V  247 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~-~  247 (387)
                      ++++|+++|++|++++|+||+|..+.+.+......  ....++++++.|+||.|+++|+|+||+++++        +. .
T Consensus       165 ~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~--~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~--------~~~~  234 (355)
T d1lc5a_         165 LLQAIADRCKSLNINLILDEAFIDFIPHETGFIPA--LKDNPHIWVLRSLTKFYAIPGLRLGYLVNSD--------DAAM  234 (355)
T ss_dssp             HHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGG--CTTCTTEEEEEESTTTTTCTTTCCEEEECCC--------HHHH
T ss_pred             hhhhhhhhccccccccccccceeeeeeeccccccc--ccccccceeecccccccccccccccceeccc--------hhhh
Confidence            99999999999999999999999987665443332  3344689999999999999999999999875        33 3


Q ss_pred             HHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccC
Q 038416          248 DSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLED  327 (387)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  327 (387)
                      +.+++. ......+.+++.++..++++  ..++.+..++++++++++.+.|.+++++. + .|.+|+|+|++++.     
T Consensus       235 ~~~~~~-~~~~~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~p~~~~f~~~~~~~-----  304 (355)
T d1lc5a_         235 ARMRRQ-QMPWSVNALAALAGEVALQD--SAWQQATWHWLREEGARFYQALCQLPLLT-V-YPGRANYLLLRCER-----  304 (355)
T ss_dssp             HHHHHH-SCTTCSCHHHHHHHHHGGGC--HHHHHHHHHHHHHHHHHHHHHHHTSTTEE-E-CCCSSSEEEEEESC-----
T ss_pred             HHHHhh-cCCccccccccccccccccc--cchhHHHHHHHHHHHHHHHHHHhhcCCcE-E-CCCCCEEEEEECCC-----
Confidence            444433 33567788889998888875  56678888999999999999999998877 5 67889999998874     


Q ss_pred             CCcHHHHHHHHHHhcCeEEEcCCccCC--CCeEEEEeeCChHhHHHHHHHHHHHH
Q 038416          328 IGDDLEFCLKLAKEESVIILPGRTVGM--KNWLRIAFAAEPATLEDGLERIKAFC  380 (387)
Q Consensus       328 ~~~~~~~~~~ll~~~gi~v~~g~~~~~--~~~~Ri~~~~~~e~~~~~~~~l~~~~  380 (387)
                        ++.++...+ .++||.+.||..|..  ++|+||+++ +++++++++++|++++
T Consensus       305 --~~~~~~~~L-~~~gv~vr~~~~f~~~~~~~iRis~~-~~~e~~~li~aL~~il  355 (355)
T d1lc5a_         305 --EDIDLQRRL-LTQRILIRSCANYPGLDSRYYRVAIR-SAAQNERLLAALRNVL  355 (355)
T ss_dssp             --TTCCHHHHH-HTTTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred             --CHHHHHHHH-HHCCcEEEeCccCCCCCCCEEEEEeC-CHHHHHHHHHHHHHhC
Confidence              345676666 466999999988764  589999986 6788888888888763

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=100.00  E-value=6.7e-43  Score=323.87  Aligned_cols=346  Identities=14%  Similarity=0.085  Sum_probs=275.0

Q ss_pred             cccccCCCCCCCC-CCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCCh---
Q 038416            7 QETRHSPWPRRPL-GVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGC---   82 (387)
Q Consensus         7 ~~~~~~~~~~~~~-~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~---   82 (387)
                      .+.++|+++|.+. .+...+..+.|++++...........|++..|.++||+++++++.++++....++.|+.+.++   
T Consensus        27 ~~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~  106 (401)
T d7aata_          27 NSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGT  106 (401)
T ss_dssp             CTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHH
T ss_pred             CCCcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHH
Confidence            3456899999531 233346679999999998887765679999999999999999998877766677788766443   


Q ss_pred             --HHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhh---ccCceEEEEeCC
Q 038416           83 --SQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALA---DENTVAIVIINP  157 (387)
Q Consensus        83 --~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~v~l~~p  157 (387)
                        .+++..++++++++||.|++++|+|++|...++  ..|.+++.+++.+++++..+.+.+++.+   .++++++++++|
T Consensus       107 g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~p  184 (401)
T d7aata_         107 GSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFR--DAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACA  184 (401)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHH--HTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSS
T ss_pred             HHHHHHHHhhHhhcCCCceEEEecCCCcchhhHHH--HcCCeEEEEeccccccccccHHHHHHHHhcCCCceEEEEecCC
Confidence              356777888899999999999999999999999  9999999999988888888999888776   357889999999


Q ss_pred             CCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcccc---ccCCCccEEEEecCcccccccccceEEEEe
Q 038416          158 GNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMG---VFGSIVPVITLGSISKRWIVPGWRLGWLVT  234 (387)
Q Consensus       158 ~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~  234 (387)
                      |||||.+++.+++++|+++|++|++++|.||+|.++.|++....+..   ......+++++.|+||.++++|+|+||+++
T Consensus       185 ~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~RiG~~~~  264 (401)
T d7aata_         185 HNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTV  264 (401)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEE
T ss_pred             CCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccceeeccccceeec
Confidence            99999999999999999999999999999999999998764322211   122334678889999999999999999999


Q ss_pred             eCCCCcccchhHHHHHHhh--------hhccCCcchHHHHHHHHHhhhcc-----HHHHHHHHHHHHHHHHHHHHHhhcC
Q 038416          235 SDPNGILQNSGFVDSIKGC--------LNAASHPVTFIQAAVPRIVDETN-----EAFFAKIIGLLKETADICYERIKEI  301 (387)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~  301 (387)
                      +.        ...+...+.        ......++.+.|.++..++.+..     ..+++...+++.++++.+.+.|+++
T Consensus       265 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  336 (401)
T d7aata_         265 IC--------RDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKE  336 (401)
T ss_dssp             EC--------SSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ch--------HHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            86        333333221        12335667778888887777532     3556777788889999999999886


Q ss_pred             C---CCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee-CChHhHHHHHHHHH
Q 038416          302 P---CITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA-AEPATLEDGLERIK  377 (387)
Q Consensus       302 ~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~-~~~e~~~~~~~~l~  377 (387)
                      .   .|. +..|.+|+|+|+.++          .+++.+|++++||.+.||.        |||++ .++++++.+.++|.
T Consensus       337 ~~~~~~~-~~~~~~G~F~~~~ls----------~e~~~~L~~e~gV~~~pg~--------Ris~a~~~~~~i~~la~ai~  397 (401)
T d7aata_         337 GSSHNWQ-HITDQIGMFCFTGLK----------PEQVERLTKEFSIYMTKDG--------RISVAGVASSNVGYLAHAIH  397 (401)
T ss_dssp             TCCSCCH-HHHHCCSSEEECCCC----------HHHHHHHHHHHCEECCTTC--------EEEGGGCCTTTHHHHHHHHH
T ss_pred             CCCCCcc-eECCCCeEEEecCCC----------HHHHHHHHHhCCEEECCCc--------EEEeccCCHHHHHHHHHHHH
Confidence            3   244 236889999997553          3567889999999999984        99995 68999999999998


Q ss_pred             HHHH
Q 038416          378 AFCQ  381 (387)
Q Consensus       378 ~~~~  381 (387)
                      +++|
T Consensus       398 ~v~k  401 (401)
T d7aata_         398 QVTK  401 (401)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            8764

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.2e-40  Score=300.03  Aligned_cols=300  Identities=18%  Similarity=0.340  Sum_probs=243.1

Q ss_pred             CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCC-eEEEcCCCCcchHHHhhccCCC
Q 038416           42 HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGA-NILIPRPGYPLYEIHAAGSNNN  120 (387)
Q Consensus        42 ~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~-~vl~~~p~~~~~~~~~~~~~~g  120 (387)
                      ..+.||+. +..+||+++|+++      ++++++|++|+|+++++..++++++++|| .|+++.|+|..|...+.  ..|
T Consensus        49 ~l~rYPd~-~~~~Lr~~ia~~~------gv~pe~I~it~Gs~eai~~~~~~~~~pgd~~Vl~~~P~y~~~~~~~~--~~g  119 (354)
T d1fg7a_          49 TLNRYPEC-QPKAVIENYAQYA------GVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAE--TIG  119 (354)
T ss_dssp             CTTSCCCS-SCHHHHHHHHHHH------TSCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHH--HHT
T ss_pred             HHhcCCCC-cHHHHHHHHHHHh------CCChHHeeeccCchHHHHHHHHHhhccccccccccccccccchhhhh--ccC
Confidence            35679764 5689999999999      67899999999999999999999999998 58889999999999999  999


Q ss_pred             ceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCC
Q 038416          121 LEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPY  200 (387)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~  200 (387)
                      .+++.++.  .+++.+|+++++..+. +++++++++||||||.+++.++++.+.+.++ ++.++|+||+|.++.......
T Consensus       120 ~~v~~~~~--~~~~~~d~~~l~~~~~-~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~~~~~  195 (354)
T d1fg7a_         120 VECRTVPT--LDNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLA  195 (354)
T ss_dssp             CEEEECCC--CTTSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSG
T ss_pred             ceeecccc--ccccccchhhhhhccc-ccceeeccCCCccceeEeeeccccccccccc-ccccccccccchhhccccccc
Confidence            99988877  4578999999998774 7899999999999999999999998888776 577888888888876543222


Q ss_pred             ccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHH
Q 038416          201 VPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFF  280 (387)
Q Consensus       201 ~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  280 (387)
                      .   .....+++++++||||.|+++|+|+||+++++        ++++.+.+... ....+.+.+..+..++......+.
T Consensus       196 ~---~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~~--------~~i~~l~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~  263 (354)
T d1fg7a_         196 G---WLAEYPHLAILRTLSKAFALAGLRCGFTLANE--------EVINLLMKVIA-PYPLSTPVADIAAQALSPQGIVAM  263 (354)
T ss_dssp             G---GTTTCTTEEEEEESSSTTCCGGGCCEEEEECH--------HHHHHHHHHSC-SSCSCHHHHHHHHHHTSHHHHHHH
T ss_pred             h---hhcccccceEEeCCccccCCCccccccccccc--------hhhhhhhhhcC-ccchhhHHHHHHHHHHhhhccccc
Confidence            1   23345678999999999999999999999976        78888877654 345666677777666665445566


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCcc-CCCCeEE
Q 038416          281 AKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTV-GMKNWLR  359 (387)
Q Consensus       281 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~-~~~~~~R  359 (387)
                      ....+++.++++.+.+.+.+++++..+ .|.+++|+|++++        ++.++...| .++||.+.++..| +.++|+|
T Consensus       264 ~~~~~~~~~~r~~l~~~l~~~~~~~~~-~p~~~~f~~~~~~--------~~~~~~~~L-~~~gIlvr~~~~~~~~~~~lR  333 (354)
T d1fg7a_         264 RERVAQIIAEREYLIAALKEIPCVEQV-FDSETNYILARFK--------ASSAVFKSL-WDQGIILRDQNKQPSLSGCLR  333 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTEEEE-CCCSSSEEEEEET--------THHHHHHHH-HHTTEECEECTTSTTCTTEEE
T ss_pred             cccchhhhhHHHHHHHHHHhCCCccee-CCCCceEEEEeCC--------CHHHHHHHH-HHCCcEEecCCCCCCCCCEEE
Confidence            677778888889999999998776534 7888999999886        455677666 5669999988765 4579999


Q ss_pred             EEeeCChHhHHHHHHHHH
Q 038416          360 IAFAAEPATLEDGLERIK  377 (387)
Q Consensus       360 i~~~~~~e~~~~~~~~l~  377 (387)
                      |+++ ++++.+++++.|+
T Consensus       334 isig-t~ee~~~~l~aLk  350 (354)
T d1fg7a_         334 ITVG-TREESQRVIDALR  350 (354)
T ss_dssp             EECC-CHHHHHHHHHHHH
T ss_pred             EEeC-CHHHHHHHHHHHh
Confidence            9996 5667777776664

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=100.00  E-value=2.1e-40  Score=308.15  Aligned_cols=350  Identities=14%  Similarity=0.099  Sum_probs=262.2

Q ss_pred             cccCCCCCCCC-CCCCCCCcHHHHHHHHHHhcCCC-CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEE--EcCChHH
Q 038416            9 TRHSPWPRRPL-GVSLLSDSTVAEDAVVDALRTAH-YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVY--LTLGCSQ   84 (387)
Q Consensus         9 ~~~~~~~~~~~-~~~~~~~~~~v~~a~~~~~~~~~-~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~--~~~g~~~   84 (387)
                      .++|+++|-.. .+..++..+.|.++++....+.. ..+|.+..|.++||+++++++.+..+..++.+.+.  .+.+++.
T Consensus        31 ~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (412)
T d1ajsa_          31 RKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTG  110 (412)
T ss_dssp             TCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred             CcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchhh
Confidence            45899999321 12234677889998887766543 34699999999999999999987766555566544  4555555


Q ss_pred             HHHHHHHh-------hcCCCCeEEEcCCCCcchHHHhhccCCCceeeee-ccCCCCCccCChhhHHHhh---ccCceEEE
Q 038416           85 AIEISLSV-------LARPGANILIPRPGYPLYEIHAAGSNNNLEARHY-DLLPEKRWEVDLDGVEALA---DENTVAIV  153 (387)
Q Consensus        85 a~~~~~~~-------l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~l~~~~---~~~~~~v~  153 (387)
                      ++..+..+       ++++||.|++++|+|++|...++  ..|.+.+.+ +...++.+..|.+.+++.+   .+++++++
T Consensus       111 ~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~--~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~il  188 (412)
T d1ajsa_         111 ALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFT--TAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVL  188 (412)
T ss_dssp             HHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHH--HTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEE
T ss_pred             HHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHHHHH--HcCCeEEEeecccccccccccHHHHHHHHHhccCCcEEEE
Confidence            55544433       36899999999999999999999  999886544 4444556677888776653   55788899


Q ss_pred             EeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc---ccccCCCccEEEEecCcccccccccceE
Q 038416          154 IINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP---MGVFGSIVPVITLGSISKRWIVPGWRLG  230 (387)
Q Consensus       154 l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~s~sK~~~~~g~r~G  230 (387)
                      +++||||||.+++.+++++|+++|++||++||.||+|.++.+++.....   .......+..+++.|+||.++++|+|+|
T Consensus       189 ~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G  268 (412)
T d1ajsa_         189 HACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVG  268 (412)
T ss_dssp             ESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEE
T ss_pred             ecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccCCCCCcc
Confidence            9999999999999999999999999999999999999999887643222   1222344567889999999999999999


Q ss_pred             EEEeeCCCCcccchhHHHHHHhh-----hhccCCcchHHHHHHHHHhhhcc-----HHHHHHHHHHHHHHHHHHHHHhhc
Q 038416          231 WLVTSDPNGILQNSGFVDSIKGC-----LNAASHPVTFIQAAVPRIVDETN-----EAFFAKIIGLLKETADICYERIKE  300 (387)
Q Consensus       231 ~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~  300 (387)
                      |++++...     .+....+...     ......++.+.+.++..++.+..     ..+++...+++.++++.+.+.|+.
T Consensus       269 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~  343 (412)
T d1ajsa_         269 NLTVVAKE-----PDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEA  343 (412)
T ss_dssp             EEEEECSS-----HHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhH-----HHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99997521     0111222211     12345677888888887776422     345677788899999999999988


Q ss_pred             CCC---CCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe-eCChHhHHHHHHHH
Q 038416          301 IPC---ITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF-AAEPATLEDGLERI  376 (387)
Q Consensus       301 ~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~-~~~~e~~~~~~~~l  376 (387)
                      ++.   |..+ .+.+|+|.|+.++          .+++.+|++++||.+.||+        |||+ +.++++++.++++|
T Consensus       344 ~~~~~~~~~i-~~~~G~F~~~~ls----------~~~v~~L~~e~gV~~vpg~--------Ri~~ag~~~~~i~~~a~aI  404 (412)
T d1ajsa_         344 LKTPGTWNHI-TDQIGMFSFTGLN----------PKQVEYLINQKHIYLLPSG--------RINMCGLTTKNLDYVATSI  404 (412)
T ss_dssp             TTCSSCCHHH-HHCCSSEEECCCC----------HHHHHHHHHTTCEECCTTS--------EEEGGGCCTTTHHHHHHHH
T ss_pred             hCCCCCeeee-cCCCeEEEecCCC----------HHHHHHHHHhCCEEEeCCC--------eEEeccCCHHHHHHHHHHH
Confidence            632   3322 5778999886553          3567788899999999985        9999 47899999999999


Q ss_pred             HHHHHHhh
Q 038416          377 KAFCQRHA  384 (387)
Q Consensus       377 ~~~~~~~~  384 (387)
                      .+++++++
T Consensus       405 ~~av~~~~  412 (412)
T d1ajsa_         405 HEAVTKIQ  412 (412)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhcC
Confidence            99998863

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=8.8e-39  Score=288.69  Aligned_cols=320  Identities=18%  Similarity=0.219  Sum_probs=247.6

Q ss_pred             ccccccccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCC
Q 038416            2 SERKGQETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLG   81 (387)
Q Consensus         2 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g   81 (387)
                      +|.+++++.. ++.|.+    .+|+|+.+.+++.+.+.......|+ ..|..+||+++++|++.+   ++++++|++|+|
T Consensus        14 ~~~~~~d~~~-l~~~en----p~~~p~~i~~~~~~~~~~~~~~~yp-~~g~~~Lr~aia~~~~~~---~v~~d~I~it~G   84 (334)
T d2f8ja1          14 YETEKRDKTY-LALNEN----PFPFPEDLVDEVFRRLNSDALRIYY-DSPDEELIEKILSYLDTD---FLSKNNVSVGNG   84 (334)
T ss_dssp             CCCCCCCSEE-CSSCCC----SSCCCHHHHHHHHHHCCTTGGGSCC-CSSCHHHHHHHHHHHTCS---SCCGGGEEEEEH
T ss_pred             ccccCCCceE-EECCCC----CCCCCHHHHHHHHHHhhcchhcCCC-CCCcHHHHHHHHHHhccc---CCCcceEEecCc
Confidence            4556666444 445533    4899999999999999876555564 468999999999999754   367899999999


Q ss_pred             hHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCc
Q 038416           82 CSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPC  161 (387)
Q Consensus        82 ~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~npt  161 (387)
                      +++++..++.    +||+|+++.|+|..|...++  ..|.+++.++++.+..  .+     ++..++++++++++|+|||
T Consensus        85 ~~~~l~~l~~----~~d~v~i~~P~y~~~~~~~~--~~g~~~v~v~~~~~~~--~~-----~~~~~~~~~l~l~nP~NPt  151 (334)
T d2f8ja1          85 ADEIIYVMML----MFDRSVFFPPTYSCYRIFAK--AVGAKFLEVPLTKDLR--IP-----EVNVGEGDVVFIPNPNNPT  151 (334)
T ss_dssp             HHHHHHHHHH----HSSEEEECSSCCHHHHHHHH--HHTCCEEECCCCTTSC--CC-----CCCCCTTEEEEEESSCTTT
T ss_pred             chhHHHHHhh----hccccccccccccccccchh--ccCCcccccccccccc--cc-----ccccccceEEEeccccccc
Confidence            9999987765    46999999999999999999  9999999999865432  11     2234578999999999999


Q ss_pred             cccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcc
Q 038416          162 GNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGIL  241 (387)
Q Consensus       162 G~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~  241 (387)
                      |.+++.+++.++    .++++++|+||+|..+.+...    .......+++++++|+||.++++|+|+||+++++     
T Consensus       152 G~~~s~~~l~~~----~~~~~~ii~Dd~~~~~~~~~~----~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~-----  218 (334)
T d2f8ja1         152 GHVFEREEIERI----LKTGAFVALDEAYYEFHGESY----VDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASE-----  218 (334)
T ss_dssp             CCCCCHHHHHHH----HTTTCEEEEECTTGGGTCCCC----GGGGGTCSSEEEEEESTTTSSCTTTCEEEEEECH-----
T ss_pred             ceeecHHHhhcc----ccceeEEeecccchhhccccc----ccccccCceEEEEecCccccchhhhhhhhcccch-----
Confidence            999997766553    467999999999987543322    1122344689999999999999999999999976     


Q ss_pred             cchhHHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecC
Q 038416          242 QNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLN  321 (387)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~  321 (387)
                         ++++++...+. ....+.+.+.++..++..  .+++.+..+.+.++++.+.+.|+++ |+. +..|. |.|+|+.++
T Consensus       219 ---~~i~~l~~~~~-~~~~s~~~~~~a~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~-g~~-~~~~~-g~f~~~~~~  289 (334)
T d2f8ja1         219 ---KFIDAYNRVRL-PFNVSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREM-GYR-ITDSR-GNFVFVFME  289 (334)
T ss_dssp             ---HHHHHHHHHSC-TTCSCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHH-TCE-ECCCC-SSEEEEECC
T ss_pred             ---HHHHHHHHhhc-ccccchhhhhhccccccc--ccchhhHHHHHHHHHHHHHHHHHHC-CCe-ECCCC-ceEEEEECC
Confidence               78888877654 456777888888777764  5778888899999999999999998 787 43555 558888887


Q ss_pred             cccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHHHH
Q 038416          322 VSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERIKA  378 (387)
Q Consensus       322 ~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l~~  378 (387)
                      ..      +..++.+.| .++||.+.+.     .+++||+++ +++++++++++|++
T Consensus       290 ~~------~~~~~~~~L-~~~GI~vr~~-----~~~vRis~g-~~ee~~~l~~~l~~  333 (334)
T d2f8ja1         290 KE------EKERLLEHL-RTKNVAVRSF-----REGVRITIG-KREENDMILRELEV  333 (334)
T ss_dssp             HH------HHHHHHHHH-HHTTEECEEE-----TTEEEEECC-CHHHHHHHHHHHHH
T ss_pred             CC------CHHHHHHHH-HHCCCEECCC-----CCeEEEEcC-CHHHHHHHHHHHhc
Confidence            52      445566655 5679998763     589999997 45667888777764

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=100.00  E-value=9.9e-40  Score=303.14  Aligned_cols=353  Identities=15%  Similarity=0.138  Sum_probs=265.8

Q ss_pred             cccCCCCCCCC-CCCCCCCcHHHHHHHHHHhcCC-CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEc--CChHH
Q 038416            9 TRHSPWPRRPL-GVSLLSDSTVAEDAVVDALRTA-HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLT--LGCSQ   84 (387)
Q Consensus         9 ~~~~~~~~~~~-~~~~~~~~~~v~~a~~~~~~~~-~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~--~g~~~   84 (387)
                      .++|+++|... .+...+..+.|++|.+...... ...+|++..|.++||+++++++.+..+.....+.++++  .++..
T Consensus        30 ~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (412)
T d1yaaa_          30 TKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTG  109 (412)
T ss_dssp             SCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred             CcEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchh
Confidence            46899999421 1222456689998877665443 33479999999999999999998766644444444433  33444


Q ss_pred             HHHHHH--HhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc---cCceEEEEeCCCC
Q 038416           85 AIEISL--SVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD---ENTVAIVIINPGN  159 (387)
Q Consensus        85 a~~~~~--~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~n  159 (387)
                      ++..++  ..+..+||.|++++|+|+.|...+.  ..|.++..+++..++++..+.+.+++.+.   +.++++++++|||
T Consensus       110 ~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~N  187 (412)
T d1yaaa_         110 ALHISAKFFSKFFPDKLVYLSKPTWANHMAIFE--NQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHN  187 (412)
T ss_dssp             HHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHH--TTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCT
T ss_pred             HHHHHHHHHhccCCCCEEecccccCchhHHHHH--HcCCceecccccccccccccchhhhcccccCCCceEEEEecCCCC
Confidence            443333  3346899999999999999999999  99999999998877888888888877664   4567889999999


Q ss_pred             CccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccc------cccCCCccEEEEecCcccccccccceEEEE
Q 038416          160 PCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPM------GVFGSIVPVITLGSISKRWIVPGWRLGWLV  233 (387)
Q Consensus       160 ptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~  233 (387)
                      |||.+++.+++++|+++|+++++++|+|++|.++.+++....+.      ......++++++.|+||.|+++|+|+||++
T Consensus       188 PTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~  267 (412)
T d1yaaa_         188 PTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFH  267 (412)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEE
T ss_pred             CccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccccCcCceEEEE
Confidence            99999999999999999999999999999999999876433221      223445678999999999999999999999


Q ss_pred             eeCCCCcccchhHHHHH----Hhh-hhccCCcchHHHHHHHHHhhhcc-----HHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 038416          234 TSDPNGILQNSGFVDSI----KGC-LNAASHPVTFIQAAVPRIVDETN-----EAFFAKIIGLLKETADICYERIKEIPC  303 (387)
Q Consensus       234 ~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~  303 (387)
                      ++...... .....+.+    ... .....+++.+.|.++..++.+..     ..+++...+.++++++.+.+.|+++..
T Consensus       268 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~  346 (412)
T d1yaaa_         268 LALTKQAQ-NKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGT  346 (412)
T ss_dssp             EECCSCTT-HHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             Echhhhhh-HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            98632110 00111111    111 12456778889999888887632     355777888899999999999988621


Q ss_pred             ---CCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee-CChHhHHHHHHHHHHH
Q 038416          304 ---ITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA-AEPATLEDGLERIKAF  379 (387)
Q Consensus       304 ---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~-~~~e~~~~~~~~l~~~  379 (387)
                         |. +..|++|+|.|+.++          .+++++|++++||.+.||.        ||+++ .++++++.+.++|.++
T Consensus       347 ~~~~~-~~~~~gG~F~~~~ls----------~e~~~~L~~e~~V~~~~g~--------Ris~~g~~~~~i~~l~~ai~~v  407 (412)
T d1yaaa_         347 PGNWD-HIVNQCGMFSFTGLT----------PQMVKRLEETHAVYLVASG--------RASIAGLNQGNVEYVAKAIDEV  407 (412)
T ss_dssp             SSCCT-HHHHCCSSEEECCCC----------HHHHHHHHHHHCEECCTTS--------EEEGGGCCTTTHHHHHHHHHHH
T ss_pred             CCCCc-eeCCCceEEEecCcC----------HHHHHHHHHhCCEEECCCC--------EEEeccCCHHHHHHHHHHHHHH
Confidence               44 336889999996553          3678889999999998874        99994 7889999999999998


Q ss_pred             HHHh
Q 038416          380 CQRH  383 (387)
Q Consensus       380 ~~~~  383 (387)
                      ++.+
T Consensus       408 ~k~~  411 (412)
T d1yaaa_         408 VRFY  411 (412)
T ss_dssp             HHHC
T ss_pred             HHhh
Confidence            8754

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.3e-41  Score=311.22  Aligned_cols=347  Identities=14%  Similarity=0.128  Sum_probs=264.5

Q ss_pred             ccccCCCCCCCCC-CCCCCCcHHHHHHHHHHhcCC-CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHH
Q 038416            8 ETRHSPWPRRPLG-VSLLSDSTVAEDAVVDALRTA-HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQA   85 (387)
Q Consensus         8 ~~~~~~~~~~~~~-~~~~~~~~~v~~a~~~~~~~~-~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a   85 (387)
                      +.++|+++|.+.. ...+|..+.|++|........ ....|++..|.++||+++++++.++++..+++++++++.+++++
T Consensus        26 ~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~  105 (397)
T d3tata_          26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGS  105 (397)
T ss_dssp             SSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHH
T ss_pred             CCcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhH
Confidence            3458899994322 122466789999987765443 34579999999999999999998887777778888887665543


Q ss_pred             ----HHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc---cCceEEEEeCCC
Q 038416           86 ----IEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD---ENTVAIVIINPG  158 (387)
Q Consensus        86 ----~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~  158 (387)
                          +..++..++.+||.|++++|+|.+|...++  ..|.+++.+++..++++..+.+.+.+.+.   ++++++++++||
T Consensus       106 ~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~--~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  183 (397)
T d3tata_         106 GALKVGADFLKRYFPESGVWVSDPTWENHVAIFA--GAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCH  183 (397)
T ss_dssp             HHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHH--TTTCCCEECCCCCTTTSSCCHHHHHHHHTTCCSSCCCEECSSSC
T ss_pred             HHHHHHHHHhhhcCCCCcceecccCccccHHHHH--HcCCEEEEEecchhhccccchHHHHHHhhhcccccEEEEecCCC
Confidence                555666667999999999999999999999  99999999999888888888888777653   567888999999


Q ss_pred             CCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-cc-ccCCCccEEEEecCcccccccccceEEEEeeC
Q 038416          159 NPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MG-VFGSIVPVITLGSISKRWIVPGWRLGWLVTSD  236 (387)
Q Consensus       159 nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~-~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~  236 (387)
                      ||||.+++.+++++|+++|+++++++|+||+|.++.|++....+ .. .....++++++.|+||.++++|+|+||++++.
T Consensus       184 NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~  263 (397)
T d3tata_         184 NPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMC  263 (397)
T ss_dssp             SSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTTCCBCCEEEC
T ss_pred             CCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccCccccccccch
Confidence            99999999999999999999999999999999999887532222 11 12334578999999999999999999999875


Q ss_pred             CCCcccchhHHHHHHh----h-hhccCCcchHHHHHHHHHhhhcc-----HHHHHHHHHHHHHHHHHHHHHhhcC-CC--
Q 038416          237 PNGILQNSGFVDSIKG----C-LNAASHPVTFIQAAVPRIVDETN-----EAFFAKIIGLLKETADICYERIKEI-PC--  303 (387)
Q Consensus       237 ~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~-~~--  303 (387)
                      ..  .   +...++..    . .....+++...|.++..++....     ..+++...++++++++.+.+.|+.+ +.  
T Consensus       264 ~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~  338 (397)
T d3tata_         264 ED--A---EAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERN  338 (397)
T ss_dssp             SS--T---THHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCTTSC
T ss_pred             hH--H---HHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            22  1   12222221    1 12345566778888777776522     2445556677777888888888764 22  


Q ss_pred             CCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe-eCChHhHHHHHHHHHHHH
Q 038416          304 ITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF-AAEPATLEDGLERIKAFC  380 (387)
Q Consensus       304 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~-~~~~e~~~~~~~~l~~~~  380 (387)
                      |. +..|.+|+|+|+.++          .++++.|++++||.+.||.        |||+ +.++++++.+.++|.+++
T Consensus       339 ~~-~~~~~~G~F~~~~ls----------~e~~~~L~~e~~V~l~~g~--------Ri~~a~~~~~~i~~~~~ai~~v~  397 (397)
T d3tata_         339 FD-YLLNQRGMFSYTGLS----------AAQVDRLREEFGVYLIASG--------RMCVAGLNTANVQRVAKAFAAVM  397 (397)
T ss_dssp             TT-HHHHCCSSBCCCCCC----------HHHHHHHTTTTCEECCSSS--------CCBTTSCCTTTHHHHHHHHHHHC
T ss_pred             eE-EEcCCCceEEecCcC----------HHHHHHHHHhCCEEeCCCC--------EEEeccCCHHHHHHHHHHHHHhC
Confidence            44 236889999997653          3567889899999999984        9999 568999999998887653

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7e-40  Score=303.07  Aligned_cols=343  Identities=17%  Similarity=0.135  Sum_probs=262.8

Q ss_pred             cccCCCCCCCC-CCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCE--EEcCChHHH
Q 038416            9 TRHSPWPRRPL-GVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDV--YLTLGCSQA   85 (387)
Q Consensus         9 ~~~~~~~~~~~-~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i--~~~~g~~~a   85 (387)
                      .++|+++|... .+...|.++.|++|+.+...+.....|++..|.++||+++++|+.++++....++.+  +.+.+++.+
T Consensus        27 ~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (396)
T d2q7wa1          27 GKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGA  106 (396)
T ss_dssp             -CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHH
T ss_pred             CcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHH
Confidence            35799999431 122356789999999998887766679999999999999999998877655545544  345666555


Q ss_pred             HHHHHHh--hcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhh---ccCceEEEEeCCCCC
Q 038416           86 IEISLSV--LARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALA---DENTVAIVIINPGNP  160 (387)
Q Consensus        86 ~~~~~~~--l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~v~l~~p~np  160 (387)
                      +..++..  ...+||.|++++|+|++|...+.  ..|.+++.++...++++..+...+++..   .++++++++++||||
T Consensus       107 ~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~NP  184 (396)
T d2q7wa1         107 LRVAADFLAKNTSVKRVWVSNPSWPNHKSVFN--SAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNP  184 (396)
T ss_dssp             HHHHHHHHHHHSCCCEEEEEESCCTHHHHHHH--HTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTT
T ss_pred             HHHHHHHHhhcccceEEEEecCCCccchHHHH--HcCCeeEecccccccccccccchHHHHHHHhccCcEEEEecCCcCC
Confidence            5555444  46899999999999999999999  9999999999887777777777666643   457888899999999


Q ss_pred             ccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccc-cc-cCCCccEEEEecCcccccccccceEEEEeeCCC
Q 038416          161 CGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPM-GV-FGSIVPVITLGSISKRWIVPGWRLGWLVTSDPN  238 (387)
Q Consensus       161 tG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~-~~-~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~  238 (387)
                      ||.+++.+++++|+++|++|++++|+||+|.++.+++...... .. ....++.+++.|+||.++++|+|+||++++.  
T Consensus       185 TG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~--  262 (396)
T d2q7wa1         185 TGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVA--  262 (396)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEEC--
T ss_pred             cCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhcccccccccccccccccCCCccccccch--
Confidence            9999999999999999999999999999999998875432221 11 1123467888899999999999999999986  


Q ss_pred             CcccchhHHHHHHhh--------hhccCCcchHHHHHHHHHhhhcc-----HHHHHHHHHHHHHHHHHHHHHhhcCC---
Q 038416          239 GILQNSGFVDSIKGC--------LNAASHPVTFIQAAVPRIVDETN-----EAFFAKIIGLLKETADICYERIKEIP---  302 (387)
Q Consensus       239 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~---  302 (387)
                            ..++.....        .....+++...|.++..++....     ++++++..++++++++.+.+.|++++   
T Consensus       263 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~  336 (396)
T d2q7wa1         263 ------ADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANR  336 (396)
T ss_dssp             ------SSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCS
T ss_pred             ------hHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence                  233333222        12345667777888777766422     35677788889999999999999862   


Q ss_pred             CCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee-CChHhHHHHHHHHHHHH
Q 038416          303 CITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA-AEPATLEDGLERIKAFC  380 (387)
Q Consensus       303 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~-~~~e~~~~~~~~l~~~~  380 (387)
                      .|..+ .+.+|+|.|+.++          .+++..|++++||.+.||+        |||++ .++++++.+.++|.+++
T Consensus       337 ~~~~~-~~~~G~F~~~~l~----------~e~~~~L~~e~gV~~~~g~--------Ri~~a~l~~~~i~~~~~ai~~v~  396 (396)
T d2q7wa1         337 DFSFI-IKQNGMFSFSGLT----------KEQVLRLREEFGVYAVASG--------RVNVAGMTPDNMAPLCEAIVAVL  396 (396)
T ss_dssp             CCTHH-HHCCSSEEECCCC----------HHHHHHHHHHHCEECCTTC--------EEEGGGCCTTTHHHHHHHHHHHC
T ss_pred             Cccee-cCCCeEEEeeCCC----------HHHHHHHHHhCCEEECCCC--------EEEecCCCHHHHHHHHHHHHHhC
Confidence            24423 5678999997653          3567888899999998875        99994 68899999999988763

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=100.00  E-value=6.7e-39  Score=296.39  Aligned_cols=343  Identities=14%  Similarity=0.121  Sum_probs=258.4

Q ss_pred             ccccCCCCCCCC-CCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCCh-HHH
Q 038416            8 ETRHSPWPRRPL-GVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGC-SQA   85 (387)
Q Consensus         8 ~~~~~~~~~~~~-~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~-~~a   85 (387)
                      ..++|+++|... .+...+.++.|.+|++....+.....|++..|.++||+++++++.+..+.....+.+++++|+ ..+
T Consensus        26 ~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (394)
T d2ay1a_          26 QGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALR  105 (394)
T ss_dssp             TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHH
T ss_pred             CCCEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHH
Confidence            356899999532 122346779999999999887655579999999999999999998765533334444444432 444


Q ss_pred             HHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhh---ccCceEEEEeCCCCCcc
Q 038416           86 IEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALA---DENTVAIVIINPGNPCG  162 (387)
Q Consensus        86 ~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~v~l~~p~nptG  162 (387)
                      +...+..+.++||.|++++|+|.+|...++  ..|.+++.+++..++++..+.+.+++..   .+.++++++++||||||
T Consensus       106 l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~--~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~NPTG  183 (394)
T d2ay1a_         106 QALELARMANPDLRVFVSDPTWPNHVSIMN--FMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTG  183 (394)
T ss_dssp             HHHHHHHHHCTTCCEEEEESCCHHHHHHHH--HHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTC
T ss_pred             HHHHHhhhcCCceEEEEecccccchHHHHH--HcCCEEEEecccchhcccccchhHHHHHhhcccCcEEEEeCCCCCCCC
Confidence            556666677999999999999999999999  9999999999877766667766666543   44677888889999999


Q ss_pred             ccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccc--cCCCccEEEEecCcccccccccceEEEEeeCCCCc
Q 038416          163 NVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV--FGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGI  240 (387)
Q Consensus       163 ~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~  240 (387)
                      ..++.+++++|+++|+++++++|+||+|.++.|++....+...  .....+.+++.|+||.++++|+|+||++++.    
T Consensus       184 ~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~----  259 (394)
T d2ay1a_         184 ANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALC----  259 (394)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEEC----
T ss_pred             CCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCCcccccchhhch----
Confidence            9999999999999999999999999999999887543322211  1223457888999999999999999999986    


Q ss_pred             ccchhHHHHHHhh--------hhccCCcchHHHHHHHHHhhhcc-----HHHHHHHHHHHHHHHHHHHHHhhcCC---CC
Q 038416          241 LQNSGFVDSIKGC--------LNAASHPVTFIQAAVPRIVDETN-----EAFFAKIIGLLKETADICYERIKEIP---CI  304 (387)
Q Consensus       241 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~---~~  304 (387)
                          ...+.....        ......++...+..+...+.+..     ...++.+.+++.++++.+.+.|++++   .|
T Consensus       260 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~  335 (394)
T d2ay1a_         260 ----ADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRF  335 (394)
T ss_dssp             ----SSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT
T ss_pred             ----hHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCce
Confidence                233322211        12344566667777666655422     35566777888889999999998752   24


Q ss_pred             CCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe-eCChHhHHHHHHHHHHH
Q 038416          305 TCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF-AAEPATLEDGLERIKAF  379 (387)
Q Consensus       305 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~-~~~~e~~~~~~~~l~~~  379 (387)
                      . +..|++|+|+|+.++          .+++++|++++||.+.||.        |||+ +.++++++.+.++|.++
T Consensus       336 ~-~~~~~~G~F~~~~ls----------~~~~~~L~~~~~V~~~~g~--------Ri~~a~l~~~~i~~l~~ai~~v  392 (394)
T d2ay1a_         336 G-FVAEHRGMFSRLGAT----------PEQVKRIKEEFGIYMVGDS--------RINIAGLNDNTIPILARAIIEV  392 (394)
T ss_dssp             T-HHHHCCSSEEECCCC----------HHHHHHHHHHHCEECCTTC--------EEEGGGCCTTTHHHHHHHHHHH
T ss_pred             e-eECCCceeEEecCcC----------HHHHHHHHHhCCEEecCCC--------EEEecCCCHHHHHHHHHHHHHh
Confidence            4 336889999997653          3567889899999999974        9999 57899999988888764

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=100.00  E-value=4.2e-37  Score=283.05  Aligned_cols=328  Identities=14%  Similarity=0.144  Sum_probs=243.3

Q ss_pred             ccCCCCCCCCCCCCCCCcHHHHHHHHHHhcC--CCCCCCCCC----CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChH
Q 038416           10 RHSPWPRRPLGVSLLSDSTVAEDAVVDALRT--AHYNCYSPT----LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCS   83 (387)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~--~~~~~y~~~----~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~   83 (387)
                      ..+..-|+|    .+..|-...++-..+..-  .+.+.|...    ...++|++.|++++....+..++..+|++++|++
T Consensus        58 ~~~~~~gdp----~~~~~~w~~~~~~~~~~~~~~~~~sy~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gst  133 (425)
T d2hoxa1          58 SADVASGDG----LFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVT  133 (425)
T ss_dssp             CEECCSCCC----GGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHH
T ss_pred             eeeCCCCCC----CCCCHHHHhCcccceEEeecccccceecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHH
Confidence            334444555    554454555555554431  122234332    2358999999999987777666667899999999


Q ss_pred             HHHHHHHHhh--------cCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEe
Q 038416           84 QAIEISLSVL--------ARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVII  155 (387)
Q Consensus        84 ~a~~~~~~~l--------~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~  155 (387)
                      +++.+++++|        +.|||+|+++.|+|..|....+  ..+.+...        |..|.+.+++++++++++++++
T Consensus       134 eli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~--~~~~~~~~--------~~~D~~~~~~~~~~~~~ii~l~  203 (425)
T d2hoxa1         134 QLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTK--YFDKKGYV--------WAGNAANYVNVSNPEQYIEMVT  203 (425)
T ss_dssp             HHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHH--HSCBTTEE--------EEEEGGGGTTCSCGGGEEEEEE
T ss_pred             HHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHH--HcCCCCCc--------cCCCHHHHHhhCCCCceEEEEE
Confidence            9999999999        4688999999999999998888  77765444        4457788888888899999999


Q ss_pred             CCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEee
Q 038416          156 NPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTS  235 (387)
Q Consensus       156 ~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~  235 (387)
                      +||||||.+..          +..+++.+|.|++|.+..|     .++..  ..++++++.|+||.|+++|+|+||++++
T Consensus       204 sPnNPtG~l~~----------~v~~~~~~I~DEaY~~~~f-----~~~~~--~~~~~Ivl~S~SK~fglaGlRiGw~i~~  266 (425)
T d2hoxa1         204 SPNNPEGLLRH----------AVIKGCKSIYDMVYYWPHY-----TPIKY--KADEDILLFTMSKFTGHSGSRFGWALIK  266 (425)
T ss_dssp             SSCTTTCCCCC----------CSSTTCEEEEECTTCSTTT-----SCCCS--CBCCSEEEEEHHHHTSCGGGCCEEEEEC
T ss_pred             CCCCCCcchhh----------hhhhCCEEEEeccccCccc-----cchhh--hcCCeEEEEeCHHhccCcchheeeEEeC
Confidence            99999998732          2245899999999975332     23322  2356799999999999999999998886


Q ss_pred             CCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhcc----------HHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 038416          236 DPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETN----------EAFFAKIIGLLKETADICYERIKEIPCI  304 (387)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~~~~~  304 (387)
                      +       +.+.+++.+... ...+++.++|.++..+++...          .++++...+.++++++.+.+.+++.+.+
T Consensus       267 ~-------~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~  339 (425)
T d2hoxa1         267 D-------ESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRF  339 (425)
T ss_dssp             C-------HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSE
T ss_pred             C-------HHHHHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            5       257777776654 456788899998888876422          2456777888899999999999887544


Q ss_pred             CCCCCCC-------------ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC-CCeEEEEeeCChHhHH
Q 038416          305 TCPVKPQ-------------GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM-KNWLRIAFAAEPATLE  370 (387)
Q Consensus       305 ~~~~~~~-------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-~~~~Ri~~~~~~e~~~  370 (387)
                      .+...|.             .+.|.|+++..       +..+++.++++++||.+.||..|+. ++++|||+..++|+++
T Consensus       340 ~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~-------~~~~~~~~lL~e~gI~v~pGs~FG~~~~yvRisl~~~~e~ld  412 (425)
T d2hoxa1         340 SYQELPQSEYCNYFRRMRPPSPSYAWVKCEW-------EEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFD  412 (425)
T ss_dssp             ECCCCCSCEEETTTTEEECCCCSEEEEEECS-------GGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSSCHHHHH
T ss_pred             eeeccCCccceeeeeeccCCCcceeeeeCCC-------ChHHHHHHHHHhCCEEEEechhcCCCCCEEEEEecCCHHHHH
Confidence            4322233             33466776653       2344566778899999999999986 5799999999999999


Q ss_pred             HHHHHHHHHHHH
Q 038416          371 DGLERIKAFCQR  382 (387)
Q Consensus       371 ~~~~~l~~~~~~  382 (387)
                      +++++|++++++
T Consensus       413 ~~l~rL~~~v~a  424 (425)
T d2hoxa1         413 QLMYYLKDMVKA  424 (425)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhc
Confidence            999999998763

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.96  E-value=2.4e-29  Score=228.94  Aligned_cols=335  Identities=16%  Similarity=0.057  Sum_probs=220.5

Q ss_pred             cccccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHH
Q 038416            5 KGQETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQ   84 (387)
Q Consensus         5 ~g~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~   84 (387)
                      .|++...+.+-.    ..+++.++...+++..        .+++..+..++++..++.+..     ...+++++++|+++
T Consensus        17 ~g~~~i~~~~gl----~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~-----~~~e~~~~~~~~~~   79 (366)
T d2aeua1          17 KGRDALYDLSGL----SGGFLIDEKDKALLNT--------YIGSSYFAEKVNEYGLKHLGG-----DENDKCVGFNRTSS   79 (366)
T ss_dssp             TCGGGCEECSSC----CCCCCCCHHHHHHHTS--------TTHHHHHHHHHHHHHHHHHTC-----CTTEEEEEESSHHH
T ss_pred             hccchHhhhccC----CCCCCccHHHHHHHHH--------hcCchhhHHHHHHHHHHHccC-----CCccEEEEeCCHHH
Confidence            455655555332    2256777666654422        122223557788887777742     34578999999999


Q ss_pred             HHHHHHHhhcCCCCeEEEc-CCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccc
Q 038416           85 AIEISLSVLARPGANILIP-RPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGN  163 (387)
Q Consensus        85 a~~~~~~~l~~~g~~vl~~-~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~  163 (387)
                      |+..++.++.++++.|+++ .|+|.++...++  ..|++++..         -|+++++++++++|++|++++|+||++ 
T Consensus        80 a~~~~l~al~~~~~vi~~~~~~~~~~~~~~~~--l~g~~~v~~---------~d~e~l~~~i~~~tk~i~~~~p~n~~~-  147 (366)
T d2aeua1          80 AILATILALKPKKVIHYLPELPGHPSIERSCK--IVNAKYFES---------DKVGEILNKIDKDTLVIITGSTMDLKV-  147 (366)
T ss_dssp             HHHHHHHHHCCSEEEEECSSSSCCTHHHHHHH--HTTCEEEEE---------SCHHHHHTTCCTTEEEEEECBCTTSCB-
T ss_pred             HHHHHHHHhCCCCEEEEecCCCcchhHHHHHH--hcCCeEECC---------CCHHHHHHhcCCCceEEEEEecCCCCc-
Confidence            9999999986544444554 689999999999  888875432         178999999999999999999999853 


Q ss_pred             cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccc
Q 038416          164 VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQN  243 (387)
Q Consensus       164 ~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~  243 (387)
                       ++.+++++|+++|+++|+++|+|++|+...+..........+..   .+++.|+||.  ++|+|+||+++++       
T Consensus       148 -~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~---di~~~S~sK~--~~g~~~G~i~~~~-------  214 (366)
T d2aeua1         148 -IELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGA---DLVVTSTDKL--MEGPRGGLLAGKK-------  214 (366)
T ss_dssp             -CCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTC---SEEEEETTSS--SSSCSCEEEEEEH-------
T ss_pred             -CCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcCc---eEEEeccccc--ccccceeEEEecH-------
Confidence             56788999999999999999999999976654333222222333   3888999997  5688999999987       


Q ss_pred             hhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHH----HHHHHHHHhhcCCCCCC-CCCCCceEEEE
Q 038416          244 SGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKE----TADICYERIKEIPCITC-PVKPQGAMFVM  317 (387)
Q Consensus       244 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~-~~~~~~g~~~~  317 (387)
                       +++++++.... .+++++++.++++...|+......+++..+..++    ..+.+......++++.. ...+.++.+++
T Consensus       215 -~~i~~~~~~~~~~g~~~~~~~~~a~~~aL~tl~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (366)
T d2aeua1         215 -ELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVI  293 (366)
T ss_dssp             -HHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEE
T ss_pred             -HHHHHHHHHHhcccccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhccccccccccCcccccCccchhc
Confidence             88998887753 5566778888888777765432223333332222    22333333333322221 11233455555


Q ss_pred             EecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccC-CCCeEEEEeeCC-hH--hHHHHHHHHHHHHHH
Q 038416          318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVG-MKNWLRIAFAAE-PA--TLEDGLERIKAFCQR  382 (387)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~-~~~~~Ri~~~~~-~e--~~~~~~~~l~~~~~~  382 (387)
                      ............++.+++..|++++||.+.||..|. ..+++||+++.. .+  +.+.+++.|.+.++.
T Consensus       294 ~~~~~~~~~~~~~~~~~a~~Ll~~~gV~~ip~~~~p~~~~~lRis~~~~~~~~i~~d~l~~ai~~~lK~  362 (366)
T d2aeua1         294 KRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKM  362 (366)
T ss_dssp             EEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHH
T ss_pred             cCCCcceeecccCHHHHHHHHHHhCCEEEEECCCCCCCCCEEEEeccccchhhCCHHHHHHHHHHHHHH
Confidence            543321110112345788889999999999998773 467999999652 22  235555555555553

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=7.2e-28  Score=221.70  Aligned_cols=329  Identities=14%  Similarity=0.127  Sum_probs=221.2

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCCC--C----------CcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHH
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSPT--L----------GVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLS   91 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~~--~----------~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~   91 (387)
                      -|.++.++++|.+.+.....  |+.+  .          ..+++|+.+|+++      ++++++|++++|+|+++..++.
T Consensus        12 ~p~~~~v~ea~~~~~~~~~~--~~np~~~~~~~~~~~~~~~~~~R~~iA~~l------g~~~~~I~~~~~~t~~l~~~~~   83 (391)
T d1p3wa_          12 TPVDPRVAEKMMQFMTMDGT--FGNPASRSHRFGWQAEEAVDIARNQIADLV------GADPREIVFTSGATESDNLAIK   83 (391)
T ss_dssp             CCCCHHHHHHHHTTTSTTSC--CCCTTCTTSHHHHHHHHHHHHHHHHHHHHH------TCCGGGEEEESSHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHhccc--cCCCchhhhHHHHHHHHHHHHHHHHHHHHc------CCCCCcEEEECCHHHHHHHHHh
Confidence            47899999999998875422  2211  1          1346788999999      5688999999999999999888


Q ss_pred             hh----cCCCCeEEEcCCCCcchHHH---hhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCcccc
Q 038416           92 VL----ARPGANILIPRPGYPLYEIH---AAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNV  164 (387)
Q Consensus        92 ~l----~~~g~~vl~~~p~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~  164 (387)
                      ++    .++||+|++.++.|+++...   ++  ..|.++..++.+.  .+.+|+++++++++++|++|++++++||||..
T Consensus        84 ~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~--~~G~~v~~v~~~~--~~~~d~~~~~~~i~~~T~lv~is~~~n~tG~~  159 (391)
T d1p3wa_          84 GAANFYQKKGKHIITSKTEHKAVLDTCRQLE--REGFEVTYLAPQR--NGIIDLKELEAAMRDDTILVSIMHVNNEIGVV  159 (391)
T ss_dssp             HHHHHHGGGCCEEEEETTSCHHHHHHHHHHH--HTTCEEEEECCCT--TSCCCHHHHHHHCCTTEEEEECCSBCTTTCCB
T ss_pred             hhhhhhcCCCCEEEEeccccchHHHHHHHHH--HcCCEEEEeCCCC--CCeEcHHHHHHhCCCCcEEEEEECCCCCCeeE
Confidence            75    47999999999999876443   34  5689999998753  34689999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccch
Q 038416          165 FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNS  244 (387)
Q Consensus       165 ~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~  244 (387)
                      +|   +++|.++|+++|+++++|.+|+...    .+..+.....+   +++.|.+|++|.+|  +|+++.++.......|
T Consensus       160 ~~---~~~I~~~~~~~~~~~ivD~~~~~g~----~~~d~~~~~~D---~~~~s~~k~~g~~g--~g~~~~~~~~~~~~~~  227 (391)
T d1p3wa_         160 QD---IAAIGEMCRARGIIYHVDATQSVGK----LPIDLSQLKVD---LMSFSGHKIYGPKG--IGALYVRRKPRVRIEA  227 (391)
T ss_dssp             CC---HHHHHHHHHHHTCEEEEECTTTBTT----BCCCTTTSCCS---EEEEESTTTTSCSS--CEEEEECBTTBCCCCC
T ss_pred             CC---HHHHHHHhccCCcEEEEeeccccCC----ccccchhcccc---ccccccccccCCCc--eEEEEEecchhcccCC
Confidence            98   6788899999999999999998522    22334344433   88889999987776  5777776532111111


Q ss_pred             hHHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC--CceEEEEEecCc
Q 038416          245 GFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKP--QGAMFVMVKLNV  322 (387)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~g~~~~~~~~~  322 (387)
                      .............+........++...+... ........++++.++..+.+.|..+++..+....  .....+.+.++.
T Consensus       228 ~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (391)
T d1p3wa_         228 QMHGGGHERGMRSGTLPVHQIVGMGEAYRIA-KEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNY  306 (391)
T ss_dssp             SSCSSCTTTTTSCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEEEEEETT
T ss_pred             cccCCccccCcccCcchhhhhhhhhhhhhHH-HHHhhHHHHHHHHHHHHHHHHHHhhcCeeecccccccCceEEEEEeCC
Confidence            1111011111112333444444444444432 2334555677777888888888876543321111  112222233332


Q ss_pred             ccccCCCcHHHHHHHHHHhcCeEEEcCCccCC-------------------CCeEEEEee--CChHhHHHHHHHHHHHHH
Q 038416          323 SMLEDIGDDLEFCLKLAKEESVIILPGRTVGM-------------------KNWLRIAFA--AEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       323 ~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-------------------~~~~Ri~~~--~~~e~~~~~~~~l~~~~~  381 (387)
                            .+...+...+ +  ++.+..|..|..                   .+++|+|++  ++++|++.+++.|+++++
T Consensus       307 ------~~~~~~~~~l-~--~i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~  377 (391)
T d1p3wa_         307 ------VEGESLIMAL-K--DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIG  377 (391)
T ss_dssp             ------SCHHHHHHHT-T--TEECBCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ------CChHHHHHHh-C--CCEEEccccccCCccchhHHHHHcCCCccccCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence                  1344554443 3  566665543311                   257999996  489999999999999999


Q ss_pred             Hhhhc
Q 038416          382 RHAKK  386 (387)
Q Consensus       382 ~~~~~  386 (387)
                      ++++.
T Consensus       378 ~lr~~  382 (391)
T d1p3wa_         378 RLRDL  382 (391)
T ss_dssp             HHHHS
T ss_pred             HHHHh
Confidence            98763

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.96  E-value=1.3e-27  Score=217.86  Aligned_cols=324  Identities=12%  Similarity=0.104  Sum_probs=207.1

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCC---------CCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYS---------PTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR   95 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~---------~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~   95 (387)
                      .+++.+++++.+....-....|.         .+.-...+++.+|+++        ..+++++|+|+++|+.+++.++++
T Consensus        13 ~l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~--------g~e~~~~t~g~t~a~~~~~~al~~   84 (364)
T d2e7ja1          13 KLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFL--------GCDVARVTNGAREAKFAVMHSLAK   84 (364)
T ss_dssp             CCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHT--------TSSEEEEESSHHHHHHHHHHHHCC
T ss_pred             cCCHHHHHHHHHHhcCCchhccccccccccccChHHHHHHHHHHHHHh--------CcCEEEEECcHHHHHHHHHHHHhC
Confidence            46788888887643210000110         1123456788899988        347899999999999999999999


Q ss_pred             CCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccC-----ceEEEEeCCCCCccccCCHHHH
Q 038416           96 PGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADEN-----TVAIVIINPGNPCGNVFSYQHL  170 (387)
Q Consensus        96 ~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~v~l~~p~nptG~~~~~~~~  170 (387)
                      +||.|+++.++|++....++  ..|+++..+|++...++.+|++++++++++.     +++|++++|+||||...|   +
T Consensus        85 ~gd~Vi~~~~~h~s~~~~~~--~~g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~---l  159 (364)
T d2e7ja1          85 KDAWVVMDENCHYSSYVAAE--RAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD---V  159 (364)
T ss_dssp             TTCEEEEETTCCHHHHHHHH--HTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCC---H
T ss_pred             CCcEEEeecccccccchHHH--hccceEEEeeeccccccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeec---c
Confidence            99999999999998888888  8999999999877677889999999988653     357889999999999987   7


Q ss_pred             HHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHH
Q 038416          171 QKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSI  250 (387)
Q Consensus       171 ~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~  250 (387)
                      ++|+++|++||+++|+|++|+....    ...+..+..+   ++++|++|+++.+| ++||+++++        ++.+.+
T Consensus       160 ~~I~~ia~~~~i~livD~a~~~g~~----~~~~~~~g~D---~~~~S~~K~~~~~g-~~g~l~~~~--------~~~~~~  223 (364)
T d2e7ja1         160 KKIAKVCSEYDVPLLVNGAYAIGRM----PVSLKEIGAD---FIVGSGHKSMAASG-PIGVMGMKE--------EWAEIV  223 (364)
T ss_dssp             HHHHHHHHTTTCCEEEECTTTBTTB----CCCHHHHTCS---EEEEEHHHHSSCCS-SCEEEEECT--------TTTTTT
T ss_pred             hhheeccccccchhhccccchhhhh----hhcccccccc---eeeeccccccCCCC-CEEEEEECH--------HHHHHH
Confidence            8899999999999999999974221    2233333333   78899999987776 689999876        333333


Q ss_pred             Hhhh--------h-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCCCceEEEEEec
Q 038416          251 KGCL--------N-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCP-VKPQGAMFVMVKL  320 (387)
Q Consensus       251 ~~~~--------~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~g~~~~~~~  320 (387)
                      ....        . ...........++...+... .+.++...+. .++++.+.+.++++ ++... ..|......+...
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~-~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~  300 (364)
T d2e7ja1         224 LRRSEKYKNKEVELLGCTARGATIITLMASFPHV-RERIKRWDEE-VEKARRFAAEMEKL-GIKQLGDNPHNHDLMFFHA  300 (364)
T ss_dssp             TCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHH-HHHGGGHHHH-HHHHHHHHHHHHHT-TCEEESSSSCCSSEEEEEC
T ss_pred             HhhccccCcccccccccccchhHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHc-CCeecCCCCCCcceEEEec
Confidence            2111        0 01122222233333333321 1222222223 34555666777776 33322 1222222333333


Q ss_pred             Cccc--ccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe-eCChHhHHHHHHHHHHHHHHh
Q 038416          321 NVSM--LEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF-AAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       321 ~~~~--~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~-~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      +...  ..............+...++...   ..+....+|++. +.+++++++++++|+++++++
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~g~~~~~~~~~~~~t~edid~~~~~l~ei~~~y  363 (364)
T d2e7ja1         301 EVLYEISKKAKGGRFFLYRELKSRKIHGI---KPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEKY  363 (364)
T ss_dssp             HHHHHHHHHSSSGGGHHHHHHHHTTEECS---CTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             cchHHHHHHhhccchHHHHHHHhcCCcee---cCCCcceEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence            2110  00000111233334455676432   223356778876 578999999999999999875

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.95  E-value=2.6e-27  Score=217.27  Aligned_cols=334  Identities=13%  Similarity=0.100  Sum_probs=224.3

Q ss_pred             CccccccccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCC---CCCCCCCC----CCcHHHHHHHHHHHhhcCCCCCCC
Q 038416            1 QSERKGQETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTA---HYNCYSPT----LGVPSARRGIADYLNRDLPYKLSP   73 (387)
Q Consensus         1 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~---~~~~y~~~----~~~~~lr~~ia~~~~~~~~~~~~~   73 (387)
                      |++...+.+|.|..-       --+.|..+++++.+.+..-   ....+...    .-..++|+.+++++      ++++
T Consensus         1 ~fp~l~~~~yld~~~-------~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------~~~~   67 (381)
T d1elua_           1 QFPGLANKTYFNFGG-------QGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETF------NVDP   67 (381)
T ss_dssp             CCGGGTTSEECCTTT-------CCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHT------TSCG
T ss_pred             CCCCCCCCEEeeCCc-------ccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHh------CCCc
Confidence            455566666766432       1257778888888876531   01111111    12346778888888      4678


Q ss_pred             CCEEEcCChHHHHHHHHHhh-cCCCCeEEEcCCCCcchH----HHhhccCCCceeeeeccCCCCCccCChhhHHHhhccC
Q 038416           74 EDVYLTLGCSQAIEISLSVL-ARPGANILIPRPGYPLYE----IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADEN  148 (387)
Q Consensus        74 ~~i~~~~g~~~a~~~~~~~l-~~~g~~vl~~~p~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  148 (387)
                      ++|++|+|+|++++.++.++ .++||+|+++.+.|++..    ...+  ..|.++..++...........+.++++++++
T Consensus        68 ~~i~~~~g~t~a~~~~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~--~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~~  145 (381)
T d1elua_          68 NTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAA--RFGITYRFFPVAATLNQGDAAAVLANHLGPK  145 (381)
T ss_dssp             GGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHH--HHCCEEEEECCGGGSSSSCHHHHHHTTCCTT
T ss_pred             ccEEEECChHHHhhhcchhhhhcCCceEEEeccccceeeeccccccc--cccccccccccccccccchHHHHHHhhhccc
Confidence            89999999999999999998 589999999999998644    3444  5789999888754433333467788888999


Q ss_pred             ceEEEEeCCCCCccccCCHHHHHHHHHHHHh----cCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccc
Q 038416          149 TVAIVIINPGNPCGNVFSYQHLQKIARTARN----LGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIV  224 (387)
Q Consensus       149 ~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~----~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~  224 (387)
                      ++++++++++|+||..+|   +++|.++|++    +++++++|.+++.    +..+..+.....+   +++.|++|+++.
T Consensus       146 t~~v~i~~~~n~tG~~~~---~~~I~~l~~~~~~~~~~~~~vD~~~~~----g~~~~~~~~~~~D---~~~~s~~K~~~~  215 (381)
T d1elua_         146 TRLVILSHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSA----GSLPLDFSRLEVD---YYAFTGHKWFAG  215 (381)
T ss_dssp             EEEEEEESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTB----TTBCCCTTTSCCS---EEEEESSSTTCC
T ss_pred             ccccccccccccccccch---hhHHHHHHhhccccccccccccccccc----ccccccccccccc---cccccccccccc
Confidence            999999999999999999   5666777766    4699999999985    2233334444433   889999999753


Q ss_pred             cccceEEEEeeCCCCcccchhHHHHHHhh-----------------------hhccCCcchHHHHHHHHHhhhccHHH-H
Q 038416          225 PGWRLGWLVTSDPNGILQNSGFVDSIKGC-----------------------LNAASHPVTFIQAAVPRIVDETNEAF-F  280 (387)
Q Consensus       225 ~g~r~G~i~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~l~~~~~~~-~  280 (387)
                      + .++|+++.++.        ..+++...                       ....++++.....++.++++...+.. .
T Consensus       216 p-~G~g~l~~~~~--------~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~  286 (381)
T d1elua_         216 P-AGVGGLYIHGD--------CLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTA  286 (381)
T ss_dssp             C-TTCEEEEECTT--------TGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCH
T ss_pred             c-chhhHHHhhHH--------HHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhccc
Confidence            3 44788887652        22211100                       00123455556666666665433222 3


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCCC--CCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeE
Q 038416          281 AKIIGLLKETADICYERIKEIPCITCPVK--PQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWL  358 (387)
Q Consensus       281 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~  358 (387)
                      +.+.++..++++++.+.|+++|++.++..  +.++ ++.+.++..     .+...+. ..++++||.+..   ++.++++
T Consensus       287 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~vsf~~~~~-----~~~~~i~-~~L~~~gi~v~~---~~~~~~l  356 (381)
T d1elua_         287 EERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAG-LVSFTVDSP-----LGHRAIV-QKLEEQRIYLRT---IADPDCI  356 (381)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSS-EEEEEECSS-----SCHHHHH-HHHHHTTEECEE---ETTTTEE
T ss_pred             ccchhhhhhHHHHHHHHHhcCCCeEecCCCCcccc-EEEEEcCCC-----CCHHHHH-HHHHhCCcEEEe---cCCCCEE
Confidence            45567888888999999999988775422  3444 444444321     2334444 455778998754   2347899


Q ss_pred             EEEee--CChHhHHHHHHHHHH
Q 038416          359 RIAFA--AEPATLEDGLERIKA  378 (387)
Q Consensus       359 Ri~~~--~~~e~~~~~~~~l~~  378 (387)
                      |||++  ++.+|++++++.|++
T Consensus       357 Ris~~~~nt~edid~ll~~l~e  378 (381)
T d1elua_         357 RACCHYITDEEEINHLLARLAD  378 (381)
T ss_dssp             EEECCTTCCHHHHHHHHHHHTT
T ss_pred             EEecCCCCCHHHHHHHHHHHHh
Confidence            99996  489999999999875

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=2.1e-26  Score=212.36  Aligned_cols=322  Identities=16%  Similarity=0.165  Sum_probs=233.2

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCC-CC-C------CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh---
Q 038416           25 SDSTVAEDAVVDALRTAHYNCY-SP-T------LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL---   93 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y-~~-~------~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l---   93 (387)
                      +.|+.+.+++.+.+++...+.. +. .      ....+.|+.++++++.     ..+++|++++|+|++++.++.++   
T Consensus        33 ~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~-----~~~~~i~~~~~~T~~~~~~~~~~~~~  107 (405)
T d1jf9a_          33 QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINA-----RSAEELVFVRGTTEGINLVANSWGNS  107 (405)
T ss_dssp             CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTC-----SCGGGEEEESSHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCC-----CCcccccccCcHHHHHHHHHhccccc
Confidence            6899999999998875322111 11 0      1245667888888841     34589999999999999888763   


Q ss_pred             -cCCCCeEEEcCCCCcc----hHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHH
Q 038416           94 -ARPGANILIPRPGYPL----YEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        94 -~~~g~~vl~~~p~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~  168 (387)
                       .++||+|++....|++    +...++  ..|+++..+|++++  ..++++.++++++++|+++.+++.+|.||..+|  
T Consensus       108 ~~~~g~~il~~~~e~~s~~~~~~~~a~--~~g~~v~~~~~~~~--g~~~~~~~~~~i~~~t~lv~~~~v~~~tG~~~p--  181 (405)
T d1jf9a_         108 NVRAGDNIIISQMEHHANIVPWQMLCA--RVGAELRVIPLNPD--GTLQLETLPTLFDEKTRLLAITHVSNVLGTENP--  181 (405)
T ss_dssp             HCCTTCEEEEETTCCGGGTHHHHHHHH--HHTCEEEEECBCTT--SCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCC--
T ss_pred             ccCCCCEEEEEeCcccchHHHHHHHHH--HcCcEEEEECCCCC--CcCCHHHHHHhccCCcEEEEEecCCCcccccCc--
Confidence             4789999999999987    445556  67999999998643  468999999999999999999999999999999  


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVD  248 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~  248 (387)
                       +++|.++|+++|+++++|.+++.    +..+..+..+..+   +++.|.+|++|.+|  +|+++.++        +..+
T Consensus       182 -i~~i~~~~~~~g~~~~vD~~q~~----g~~~id~~~~~~D---~~~~s~hK~~Gp~G--~g~l~v~~--------~~~~  243 (405)
T d1jf9a_         182 -LAEMITLAHQHGAKVLVDGAQAV----MHHPVDVQALDCD---FYVFSGHKLYGPTG--IGILYVKE--------ALLQ  243 (405)
T ss_dssp             -HHHHHHHHHHTTCEEEEECTTTT----TTSCCCHHHHTCS---EEEEEGGGTTSCSS--CEEEEECH--------HHHT
T ss_pred             -hHHhhhHHHHcCCeeecccceec----cccccchhhcCCc---eeeccccccccCCC--ceeeeech--------hhhc
Confidence             78889999999999999999985    3333344455555   99999999987777  68888764        2222


Q ss_pred             HHHh-----------------------hhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 038416          249 SIKG-----------------------CLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCIT  305 (387)
Q Consensus       249 ~~~~-----------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  305 (387)
                      .+..                       .+...++++.....++..+++...+..++...++.....+++.+.++.++.+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~~~~~~  323 (405)
T d1jf9a_         244 EMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLT  323 (405)
T ss_dssp             TCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEE
T ss_pred             ccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhcCCccc
Confidence            2110                       00012466777777777777754455566777777777888888888876555


Q ss_pred             CCCCCC-ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCcc--------CCCCeEEEEee--CChHhHHHHHH
Q 038416          306 CPVKPQ-GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTV--------GMKNWLRIAFA--AEPATLEDGLE  374 (387)
Q Consensus       306 ~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~--------~~~~~~Ri~~~--~~~e~~~~~~~  374 (387)
                      .. .|. .+..+.+.++.      .+..++... +.++||.+..|..|        +.++++|||++  ++.+|++++++
T Consensus       324 ~~-~~~~r~~ivsf~~~~------~~~~~~~~~-L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~  395 (405)
T d1jf9a_         324 LY-GPQNRLGVIAFNLGK------HHAYDVGSF-LDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVT  395 (405)
T ss_dssp             EE-SCTTCCSEEEEEETT------CCHHHHHHH-HHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHH
T ss_pred             cc-CCcCcCcEEEEEcCC------CCHHHHHHH-HHHCCcEEEccchhhhhHHHhcCCCCEEEEECCCCCCHHHHHHHHH
Confidence            33 332 22344444543      134455444 57789999887755        33578999995  58899999999


Q ss_pred             HHHHHHHHh
Q 038416          375 RIKAFCQRH  383 (387)
Q Consensus       375 ~l~~~~~~~  383 (387)
                      .|+++++-+
T Consensus       396 ~l~~i~r~~  404 (405)
T d1jf9a_         396 GLQRIHRLL  404 (405)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            998887753

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.94  E-value=1.6e-24  Score=199.84  Aligned_cols=322  Identities=14%  Similarity=0.154  Sum_probs=232.0

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCCC--------CCcHHHHHHHHHHHhhcCCCCCC-CCCEEEcCChHHHHHHHHHhh--
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSPT--------LGVPSARRGIADYLNRDLPYKLS-PEDVYLTLGCSQAIEISLSVL--   93 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~~--------~~~~~lr~~ia~~~~~~~~~~~~-~~~i~~~~g~~~a~~~~~~~l--   93 (387)
                      +.|+.+++++.+.+.+...+-....        ...++.|+.+++++      +++ ++.++++++++++++.++.++  
T Consensus        33 ~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~ll------ga~~~~~i~~~~~tt~~~n~~~~~~~~  106 (408)
T d1t3ia_          33 QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFI------NARSPREIVYTRNATEAINLVAYSWGM  106 (408)
T ss_dssp             CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHT------TCSCGGGEEEESSHHHHHHHHHHHTHH
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHh------CCCCcccEEeecchHHHHHHHHhhccc
Confidence            6899999999998876422111110        12345778888888      344 578999999999999988763  


Q ss_pred             --cCCCCeEEEcCCCCcchH----HHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCH
Q 038416           94 --ARPGANILIPRPGYPLYE----IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSY  167 (387)
Q Consensus        94 --~~~g~~vl~~~p~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~  167 (387)
                        .++|++|++..-.|++..    ....  ..|.++..++.+.  ....+.+.++++++++|++|.+++.+|.||..+| 
T Consensus       107 ~~~~~g~~il~s~~e~~s~~~~~~~~~~--~~g~~v~~~~~~~--~~~~~~~~l~~~~~~~t~lv~i~~~~~~tG~~~p-  181 (408)
T d1t3ia_         107 NNLKAGDEIITTVMEHHSNLVPWQMVAA--KTGAVLKFVQLDE--QESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNP-  181 (408)
T ss_dssp             HHCCTTCEEEEETTCCGGGTHHHHHHHH--HHCCEEEEECBCT--TSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCC-
T ss_pred             cccCCCCEEEeecccchhhhhhhhhhhh--ccCceEeeeeccc--cccccHHHhhhccCCCceEEEEecccccccccCc-
Confidence              478999999999998643    3445  5788888888753  3367899999999999999999999999999999 


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                        +++|.++|+++|+++|+|.+++.    |.-+..+..++.+   +++.|.+|++|.+|  +|+++.++        +..
T Consensus       182 --~~~i~~~~~~~g~~~ivDa~q~~----g~~~id~~~~~~D---~~~~s~hK~~gp~G--~g~l~v~~--------~~~  242 (408)
T d1t3ia_         182 --AEEIAQLAHQAGAKVLVDACQSA----PHYPLDVQLIDCD---WLVASGHKMCAPTG--IGFLYGKE--------EIL  242 (408)
T ss_dssp             --HHHHHHHHHHTTCEEEEECTTTT----TTSCCCHHHHTCS---EEEEEGGGTTSCTT--CEEEEECH--------HHH
T ss_pred             --HHHHhhhhhccCceeeeccceec----ccccccccccCCc---eEEeccccccCCCC--ccccccch--------hhh
Confidence              77888899999999999999985    3334445555555   88999999976666  68888765        333


Q ss_pred             HHHHhh----------------------hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 038416          248 DSIKGC----------------------LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCIT  305 (387)
Q Consensus       248 ~~~~~~----------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  305 (387)
                      ......                      +--.++++.....++..+++...+..++++.++...+.+++.+.+...+++.
T Consensus       243 ~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~~~  322 (408)
T d1t3ia_         243 EAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLR  322 (408)
T ss_dssp             HHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred             hcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhccCcccc
Confidence            322100                      0013456666777777777755555667777888888888888888887665


Q ss_pred             CCCCC----CceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCcc--------CCCCeEEEEee--CChHhHHH
Q 038416          306 CPVKP----QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTV--------GMKNWLRIAFA--AEPATLED  371 (387)
Q Consensus       306 ~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~--------~~~~~~Ri~~~--~~~e~~~~  371 (387)
                      .....    ..+..+.+.++.      .+..++...| .++||.+..|..|        +.++++|||++  ++++|+++
T Consensus       323 ~~~~~~~~~~~~~iv~f~~~~------~~~~~v~~~L-~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~did~  395 (408)
T d1t3ia_         323 LYGPNPKHGDRAALASFNVAG------LHASDVATMV-DQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDL  395 (408)
T ss_dssp             EESCCGGGSCBCSEEEEEETT------BCHHHHHHHH-HTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHH
T ss_pred             ccCCCccccCcceEEEEEeCC------CCHHHHHHHH-hhCCcEEecCcccccHHHHhhcCCccEEEECCCCCCHHHHHH
Confidence            33211    112344444442      1455565554 7789999888765        23578999995  58999999


Q ss_pred             HHHHHHHHHHHh
Q 038416          372 GLERIKAFCQRH  383 (387)
Q Consensus       372 ~~~~l~~~~~~~  383 (387)
                      +++.|+++++.+
T Consensus       396 li~~L~~~~~~f  407 (408)
T d1t3ia_         396 FLQSLQATIRFF  407 (408)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998753

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=7.2e-25  Score=199.62  Aligned_cols=329  Identities=11%  Similarity=0.029  Sum_probs=230.7

Q ss_pred             ccccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCC------CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEc
Q 038416            6 GQETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTA------HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLT   79 (387)
Q Consensus         6 g~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~------~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~   79 (387)
                      |++...+.+.    .|.++..+|.++++..+++++-      ....++...-+.+|++.+|+|+        ..+..+++
T Consensus        37 g~~~l~f~s~----dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~--------g~e~al~~  104 (383)
T d1bs0a_          37 DRQYLNFSSN----DYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL--------GYSRALLF  104 (383)
T ss_dssp             TEEEEECSCC----CTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH--------TCSEEEEE
T ss_pred             CeEEEEEEcc----cccccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhc--------CCCceEEe
Confidence            4444444444    3446778999999999998751      1112222334689999999999        45788999


Q ss_pred             CChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhh---ccCceEEEEeC
Q 038416           80 LGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALA---DENTVAIVIIN  156 (387)
Q Consensus        80 ~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~v~l~~  156 (387)
                      +++..|+..++.++.+++|.|++....|.++....+  ..+.+++.++.       -|++++++.+   .+++++|++..
T Consensus       105 ~SG~~an~~~i~al~~~~d~v~~d~~~h~si~~g~~--~~~~~~~~~~h-------nd~~~le~~l~~~~~~~~~vv~e~  175 (383)
T d1bs0a_         105 ISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAAS--LSPSQLRRFAH-------NDVTHLARLLASPCPGQQMVVTEG  175 (383)
T ss_dssp             SCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH--TSSSEEEEECT-------TCHHHHHHHHHSCCSSCEEEEEES
T ss_pred             cccchhhHHHHHhhcCCCceEEeeccccHHHhhccc--cCCCcceEecc-------hHHHHHHHHhcccCCCceEEEecC
Confidence            999999999999999999999999999999999988  88888887764       2677777765   34567778888


Q ss_pred             CCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeC
Q 038416          157 PGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSD  236 (387)
Q Consensus       157 p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~  236 (387)
                      +.+.+|.+.|   +++|.++|++||+++++||+|+...++..+......+.. ...+.+.+++|+++..|   |++.++.
T Consensus       176 v~s~~G~i~p---l~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~-~~~~~~~t~~ka~g~~G---g~v~~~~  248 (383)
T d1bs0a_         176 VFSMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKV-KPELLVVTFGKGFGVSG---AAVLCSS  248 (383)
T ss_dssp             BCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTC-CCSEEEEESSSTTSSCC---EEEEECH
T ss_pred             CCCCCCcccc---hhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCC-ccccccccccccccccc---cccccch
Confidence            8999999988   777788889999999999999977665433332222222 33466789999998876   8888875


Q ss_pred             CCCcccchhHHHHHHhhh---hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCce
Q 038416          237 PNGILQNSGFVDSIKGCL---NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGA  313 (387)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g  313 (387)
                              ++++.++...   .++...++....++.+.++.......+.+.+++.++.+++++.|+++ ++...  +..+
T Consensus       249 --------~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~-g~~~~--~~~s  317 (383)
T d1bs0a_         249 --------TVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL-PFTLA--DSCS  317 (383)
T ss_dssp             --------HHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCEEC--SCCS
T ss_pred             --------hHHHHHHhhchhhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhc-CCccC--CCCC
Confidence                    6777776552   23444555555555555554333445677788888999999999887 45522  2223


Q ss_pred             EEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC---CCeEEEEee--CChHhHHHHHHHHHHH
Q 038416          314 MFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM---KNWLRIAFA--AEPATLEDGLERIKAF  379 (387)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---~~~~Ri~~~--~~~e~~~~~~~~l~~~  379 (387)
                      .++.+.+...     ....++...| .++||.+.+......   ...+||+++  +++|+++++++.|..+
T Consensus       318 ~Ii~v~~g~~-----~~a~~~~~~L-~~~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~~  382 (383)
T d1bs0a_         318 AIQPLIVGDN-----SRALQLAEKL-RQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN  382 (383)
T ss_dssp             SBCCEEEESH-----HHHHHHHHHH-HHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCH-----HHHHHHHHHH-HHCCceEEEEcCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence            2222223211     1234555655 567999877443221   346999994  5899999999988753

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.94  E-value=2e-24  Score=195.56  Aligned_cols=330  Identities=17%  Similarity=0.099  Sum_probs=229.1

Q ss_pred             cccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCC------CCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcC
Q 038416            7 QETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTA------HYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTL   80 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~------~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~   80 (387)
                      +++..+.+.    .|.++..+|.++++..++++.-      ....++...-+.+|++.+|+|+        ..+..++.+
T Consensus        45 ~~~~~FsSn----dYLGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~--------g~e~all~~  112 (396)
T d2bwna1          45 QDITVWCGN----DYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLH--------QKEAALVFS  112 (396)
T ss_dssp             EEEEECSCS----CTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHT--------TCSEEEEES
T ss_pred             eEEEEEEcc----cccCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHh--------CCCceeeee
Confidence            344444444    4557889999999999998851      1111222234578899999998        457888888


Q ss_pred             ChHHHHHHHHHhh--cCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhh---cc-CceEEEE
Q 038416           81 GCSQAIEISLSVL--ARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALA---DE-NTVAIVI  154 (387)
Q Consensus        81 g~~~a~~~~~~~l--~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~---~~-~~~~v~l  154 (387)
                      ++..|+..++.+|  .+++|.|+...-.|.++...++  ..+.++..++.+       |.+.+++.+   .+ ++++|++
T Consensus       113 sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~--ls~a~~~~f~Hn-------d~~~l~~l~~~~~~~~~~~iv~  183 (396)
T d2bwna1         113 SAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIK--RNAGPKRIFRHN-------DVAHLRELIAADDPAAPKLIAF  183 (396)
T ss_dssp             CHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHH--HSCCCEEEECTT-------CHHHHHHHHHHSCTTSCEEEEE
T ss_pred             cchHHHHHHHHHHhcccCCCceeehhhhhhccchhhh--ccccCceEeecc-------hHHHhhhHHhhhcccCceeEEE
Confidence            8999999999888  4688989899999999999999  888888877642       445555444   33 3456666


Q ss_pred             eCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEE
Q 038416          155 INPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLV  233 (387)
Q Consensus       155 ~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~  233 (387)
                      ....+..|.+.|   +++|.++|++||+++++||+|+...++..+......+.. ....++++||+|+||..|   |++.
T Consensus       184 egvySmdGd~ap---l~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~G---g~v~  257 (396)
T d2bwna1         184 ESVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG---GYIA  257 (396)
T ss_dssp             ESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC---EEEE
T ss_pred             EeeccCcccccc---cHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeecccccccccc---cccc
Confidence            666888999988   888888999999999999999977765444333322221 233588999999998887   9988


Q ss_pred             eeCCCCcccchhHHHHHHhhhh---ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 038416          234 TSDPNGILQNSGFVDSIKGCLN---AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKP  310 (387)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  310 (387)
                      +++        ++++.++....   ++.++++....++.+.++........+..+.++.+.+++++.+..+ ++...  +
T Consensus       258 ~~~--------~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~-g~~~~--~  326 (396)
T d2bwna1         258 ASA--------RMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPII--D  326 (396)
T ss_dssp             ECH--------HHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC--C
T ss_pred             hhH--------HHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhc-CCCcC--C
Confidence            875        78888876532   3444455555555555543333334556777788888898888877 55532  2


Q ss_pred             CceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCC---CCeEEEEee--CChHhHHHHHHHHHHH
Q 038416          311 QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGM---KNWLRIAFA--AEPATLEDGLERIKAF  379 (387)
Q Consensus       311 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---~~~~Ri~~~--~~~e~~~~~~~~l~~~  379 (387)
                      ..+..+.+.+...     ....++..++++++||.+.+......   ...+||+++  ++++|++++++.|+++
T Consensus       327 ~~spIvpv~ig~~-----~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~i  395 (396)
T d2bwna1         327 HGSHIVPVVIGDP-----VHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLL  395 (396)
T ss_dssp             CSSSCEEEECCCH-----HHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCH-----HHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence            3333444444321     12446667778888999876544322   356999994  5899999999999875

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.3e-23  Score=192.28  Aligned_cols=322  Identities=14%  Similarity=0.069  Sum_probs=222.0

Q ss_pred             CCCCCCcHHHHHHHHHHhcCCCCCC-CC-----CCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc
Q 038416           21 VSLLSDSTVAEDAVVDALRTAHYNC-YS-----PTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA   94 (387)
Q Consensus        21 ~~~~~~~~~v~~a~~~~~~~~~~~~-y~-----~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~   94 (387)
                      |.++..+|.+++++++++++-.... .+     ......+|++.+++++        ..+.+++++++++|+..++.++.
T Consensus        55 YLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~--------g~e~al~~~SG~~An~~~i~~l~  126 (401)
T d1fc4a_          55 YLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL--------GMEDAILYSSCFDANGGLFETLL  126 (401)
T ss_dssp             TTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH--------TCSEEEEESCHHHHHHTTHHHHC
T ss_pred             cccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhh--------cCCceEEecchhhhhHHHHHHhc
Confidence            4467789999999999987521111 11     1234568999999998        45789999999999999999999


Q ss_pred             CCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHh---hcc---CceEEEEeCCCCCccccCCHH
Q 038416           95 RPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEAL---ADE---NTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        95 ~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~---~~~---~~~~v~l~~p~nptG~~~~~~  168 (387)
                      +++|.|++....|.++...+.  ..+.++..++.+       |.+.+++.   .+.   .+.+|++....+..|...+  
T Consensus       127 ~~~d~i~~d~~~h~s~~~G~~--~~~a~~~~~~~~-------d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~--  195 (401)
T d1fc4a_         127 GAEDAIISDALNHASIIDGVR--LCKAKRYRYANN-------DMQELEARLKEAREAGARHVLIATDGVFSMDGVIAN--  195 (401)
T ss_dssp             CTTCEEEEETTCCHHHHHHHH--TSCSEEEEECTT-------CHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC--
T ss_pred             CCCcEEEeCCcchHHHHcccc--ccCceEEEEcCC-------ChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhh--
Confidence            999999999999999988888  888887776542       44554443   332   3345555555667888877  


Q ss_pred             HHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCC-CccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          169 HLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGS-IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                       ++++.++|++||+++|+||+|+.+.++..+......+.. .+..++++|++|+++  |...|++.++.        +++
T Consensus       196 -L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~g--g~~Gg~v~g~~--------~~~  264 (401)
T d1fc4a_         196 -LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALG--GASGGYTAARK--------EVV  264 (401)
T ss_dssp             -HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC--SSSCEEEEECH--------HHH
T ss_pred             -hhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccc--cCCcccccCCH--------HHH
Confidence             888889999999999999999987776544332222211 223478999999974  44458888865        788


Q ss_pred             HHHHhhh---hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCccc
Q 038416          248 DSIKGCL---NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSM  324 (387)
Q Consensus       248 ~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~  324 (387)
                      +.++...   .++.+.++....++...++..  ...++..++++++.+++++.+... ++...  ...+..+.+.+... 
T Consensus       265 ~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~--~~~~~~~~~l~~~~~~~~~~l~~~-g~~~~--~~~~pIv~v~~~~~-  338 (401)
T d1fc4a_         265 EWLRQRSRPYLFSNSLAPAIVAASIKVLEMV--EAGSELRDRLWANARQFREQMSAA-GFTLA--GADHAIIPVMLGDA-  338 (401)
T ss_dssp             HHHHHHCHHHHHSCCCCHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHHT-TCCBC--CSSSSEEEEEEECH-
T ss_pred             HHHHcCChhhhhcCCCCHHHHHHHHhhhccc--ccCHHHHHHHHHHHHHHHhhhccc-CCccC--CCCCCEEEEEECCH-
Confidence            8776542   234455555555555555431  223567788889999999998887 55522  22333433334321 


Q ss_pred             ccCCCcHHHHHHHHHHhcCeEEEcCCccCC---CCeEEEEee--CChHhHHHHHHHHHHHHHHh
Q 038416          325 LEDIGDDLEFCLKLAKEESVIILPGRTVGM---KNWLRIAFA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       325 ~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~---~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                          ....++.+.| .++||.+.+-.....   ...+|++++  +++|+++++++.|+++.+++
T Consensus       339 ----~~a~~~~~~L-~~~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~ev~~~l  397 (401)
T d1fc4a_         339 ----VVAQKFAREL-QKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQL  397 (401)
T ss_dssp             ----HHHHHHHHHH-HHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             ----HHHHHHHHHH-HHCCceEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence                1233566665 566999876332221   345999994  58999999999999998875

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=2e-25  Score=200.96  Aligned_cols=321  Identities=13%  Similarity=0.094  Sum_probs=205.6

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcC
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPR  104 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~  104 (387)
                      .++|++++||+++...+  ..|++.+...+|++.+|+++        ..+++++++||++|+..++.++.++||.+++..
T Consensus        11 ~p~p~v~~A~~~a~~g~--~~yg~~p~~~~le~~lA~~~--------G~~~~~~~~sGt~A~~~al~a~~~~g~~~~~~~   80 (343)
T d1m6sa_          11 KPTEEMRKAMAQAEVGD--DVYGEDPTINELERLAAETF--------GKEAALFVPSGTMGNQVSIMAHTQRGDEVILEA   80 (343)
T ss_dssp             CCCHHHHHHHHTCCCCC--GGGTCCHHHHHHHHHHHHHT--------TCSEEEEESCHHHHHHHHHHHHCCTTCEEEEET
T ss_pred             CCCHHHHHHHHhhhcCC--cccCCCHHHHHHHHHHHHHH--------CCCeEEEeCCHHHHHHHHHHHHhccCCceeccc
Confidence            45788999998765433  24666567789999999998        346789999999999999999999999999999


Q ss_pred             CCCcchHHHhh-ccCCCceeeeeccCCCCCccCChhhHHHhhccC------ceE-EEEeCCCCCccccCCHHHHHHHHHH
Q 038416          105 PGYPLYEIHAA-GSNNNLEARHYDLLPEKRWEVDLDGVEALADEN------TVA-IVIINPGNPCGNVFSYQHLQKIART  176 (387)
Q Consensus       105 p~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~-v~l~~p~nptG~~~~~~~~~~l~~~  176 (387)
                      +.|..+..... ....+..+..++.   .....+++.+++.+...      +.. ++.+.+++++|.+++.+++++|.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~  157 (343)
T d1m6sa_          81 DSHIFWYEVGAMAVLSGVMPHPVPG---KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTI  157 (343)
T ss_dssp             TCHHHHSSTTHHHHHTCCEEEEECE---ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHH
T ss_pred             cccceeeecccccccccceeecccc---ccCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHH
Confidence            88875533222 0023334444432   23356899988888643      333 4444568899999999999999999


Q ss_pred             HHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhh-
Q 038416          177 ARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLN-  255 (387)
Q Consensus       177 ~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-  255 (387)
                      |+++++++++|+++..+...............  ....+.+.+|  +..|...|+++...        +.+........ 
T Consensus       158 ~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~g~~~~~~~~~~--------~~~~~~~~~~~~  225 (343)
T d1m6sa_         158 AKEHGINVHIDGARIFNASIASGVPVKEYAGY--ADSVMFCLSK--GLCAPVGSVVVGDR--------DFIERARKARKM  225 (343)
T ss_dssp             HHHHTCEEEEEETTHHHHHHHHCCCHHHHHHT--CSEEEEESSS--TTCCSSCEEEEECH--------HHHHHHHHHHHH
T ss_pred             HHhcCeEEEeccccccccccccccchhhhccc--cccccccccc--cccccccccccccH--------HHHhhhHhhCcc
Confidence            99999999999999875543221111111111  1133333333  45566667777754        55555544432 


Q ss_pred             ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHH
Q 038416          256 AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFC  335 (387)
Q Consensus       256 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  335 (387)
                      ...+.+.....++......   .......+...++...+.+.+.++++.... .|..++++|+.++....    +..++.
T Consensus       226 ~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~----~a~~l~  297 (343)
T d1m6sa_         226 LGGGMRQAGVLAAAGIIAL---TKMVDRLKEDHENARFLALKLKEIGYSVNP-EDVKTNMVILRTDNLKV----NAHGFI  297 (343)
T ss_dssp             HTCCCSSTHHHHHHHHHHH---HHSSTTHHHHHHHHHHHHHHHHHHTCBCCG-GGCCSSEEEEECTTSSS----CHHHHH
T ss_pred             cccccchhHHHHHhhhhhh---hhhHHHHHHHHHHHHHhhhHHHHhccCccC-CCCCceEEEEEeCCCcc----cHHHHH
Confidence            2222222222222222111   111222233334444455555555444423 56667788888764322    456777


Q ss_pred             HHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHh
Q 038416          336 LKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       336 ~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                      ..| +++||.+.|..    .+++|++++  .++|+++++++.|+++++++
T Consensus       298 ~~L-~~~Gi~v~~~~----~~~iRi~~~~~~t~edid~~v~~l~~v~~~~  342 (343)
T d1m6sa_         298 EAL-RNSGVLANAVS----DTEIRLVTHKDVSRNDIEEALNIFEKLFRKF  342 (343)
T ss_dssp             HHH-HHHTEECEEEE----TTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-HHCCCEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            776 56699988753    578999984  58999999999999999986

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.2e-23  Score=191.34  Aligned_cols=323  Identities=14%  Similarity=0.060  Sum_probs=220.4

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCC--CCCcHHHHHHHHHHHhhcCCCCCC-CCCEEEcCChHHHHHHHHHhhcCCCCeEE
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSP--TLGVPSARRGIADYLNRDLPYKLS-PEDVYLTLGCSQAIEISLSVLARPGANIL  101 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~--~~~~~~lr~~ia~~~~~~~~~~~~-~~~i~~~~g~~~a~~~~~~~l~~~g~~vl  101 (387)
                      +.++.|+++|..    ...++.+.  .....+.|+.++++++      ++ +..|+++.|+|+++++++..++.+|++++
T Consensus        29 ~~~~~Vl~am~~----~~i~HRs~~f~~i~~ea~~~l~~llg------~~~~~~ii~~gsgT~a~~~~i~~l~~~~~~~~   98 (388)
T d1h0ca_          29 NLPPRIMAAGGL----QMIGSMSKDMYQIMDEIKEGIQYVFQ------TRNPLTLVISGSGHCALEAALVNVLEPGDSFL   98 (388)
T ss_dssp             CCCHHHHHHHTC----CCCCTTSHHHHHHHHHHHHHHHHHHT------CCCSEEEEESSCHHHHHHHHHHHHCCSSCCEE
T ss_pred             CCCHHHHHHhCc----CCCCCCCHHHHHHHHHHHHHHHHHhC------CCCCcEEEEcCcHHHHHHHHHHHhhccCCcee
Confidence            678888887743    22334432  1234566666666662      33 33688999999999999999999999999


Q ss_pred             EcCCCCcchHH--HhhccCCCceeeeeccCCCCCccCChhhHHHhh-ccCceEEEEeCCCCCccccCCHHHHHHHHHHHH
Q 038416          102 IPRPGYPLYEI--HAAGSNNNLEARHYDLLPEKRWEVDLDGVEALA-DENTVAIVIINPGNPCGNVFSYQHLQKIARTAR  178 (387)
Q Consensus       102 ~~~p~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~  178 (387)
                      +...++++...  ...  ..+..+..+...  .+..++.+++++.+ +++++++.+++.+|.||+..|   +++|.++|+
T Consensus        99 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~p---i~~i~~~~~  171 (388)
T d1h0ca_          99 VGANGIWGQRAVDIGE--RIGARVHPMTKD--PGGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQP---LDGFGELCH  171 (388)
T ss_dssp             ECBSSHHHHHHHHHHH--HHC--CBCCBCC--TTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHH
T ss_pred             eecccceeeeeccccc--cccccccccccC--CccccchHHHHHHhccCCcceEEEeeeeeccccccC---HHHHHHHhh
Confidence            99888875433  333  455555555443  34467888877755 558899999999999999987   888999999


Q ss_pred             hcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhh-----
Q 038416          179 NLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGC-----  253 (387)
Q Consensus       179 ~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~-----  253 (387)
                      ++|+++++|.+++.    +.....+.....+   +++.|.+|+++.++ .+|+++.++        ..++.+...     
T Consensus       172 ~~g~~~~vD~~qs~----g~~~~d~~~~~~D---~~~~s~~K~~~gp~-g~~~~~~~~--------~~~~~~~~~~~~~~  235 (388)
T d1h0ca_         172 RYKCLLLVDSVASL----GGTPLYMDRQGID---ILYSGSQKALNAPP-GTSLISFSD--------KAKKKMYSRKTKPF  235 (388)
T ss_dssp             TTTCEEEEECTTTT----TTSCCCTTTTTCS---EEEEESSSTTCCCT-TCEEEEECH--------HHHHHHTTCSSCCS
T ss_pred             cccccceecccccc----ccccccccccccc---eecccccccccCCC-ceEEEeecH--------HHHHhhhhcccccc
Confidence            99999999999985    2233334444443   88889999975443 356666653        233322210     


Q ss_pred             -------------------hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-CCC--
Q 038416          254 -------------------LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPV-KPQ--  311 (387)
Q Consensus       254 -------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~--  311 (387)
                                         .....+++.....++..++....+..++.+.++..++.+++++.++.. ++.... .+.  
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~-g~~~~~~~~~~r  314 (388)
T d1h0ca_         236 SFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQAL-GLQLFVKDPALR  314 (388)
T ss_dssp             CSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGB
T ss_pred             ccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhc-CcccccCCHHHc
Confidence                               012334555566666666655445557777778888888888888876 333221 221  


Q ss_pred             ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEE-ee--CChHhHHHHHHHHHHHHHHhhhc
Q 038416          312 GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIA-FA--AEPATLEDGLERIKAFCQRHAKK  386 (387)
Q Consensus       312 ~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~-~~--~~~e~~~~~~~~l~~~~~~~~~~  386 (387)
                      ....+.+.++..     .+..++...+++++||.+..|.....++.|||| ++  .+.++++++++.|++++++++++
T Consensus       315 s~~i~~~~~p~~-----~~~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~aL~~~L~~l~k~  387 (388)
T d1h0ca_         315 LPTVTTVAVPAG-----YDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQHCPKK  387 (388)
T ss_dssp             CTTEEEEECCTT-----CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSCCC
T ss_pred             CCeEEEEECCCC-----CCHHHHHHHHHhcCCEEEeCCchhhcCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence            112344555431     256788888888889999998776667899999 54  57899999999999999999875

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=3.8e-23  Score=188.89  Aligned_cols=326  Identities=13%  Similarity=0.081  Sum_probs=203.7

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCC-------CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh----
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSP-------TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL----   93 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~-------~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l----   93 (387)
                      ++|+.+.+++.+.+++...+-.+.       .....+.|+.+++++      ++++++|++++|+|+++..++.++    
T Consensus        12 ~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~------~~~~~~i~~~~~~T~~l~~~~~~~~~~~   85 (376)
T d1eg5a_          12 RVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVL------GVSPSEIFFTSCATESINWILKTVAETF   85 (376)
T ss_dssp             CCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHH------TSCGGGEEEESCHHHHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHc------CCCCCcEEEECCHHHHHHhhhhcccccc
Confidence            688999999999988642211110       011345688899999      578999999999999999998653    


Q ss_pred             cCCCCeEEEcCCCCcchHH---HhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHH
Q 038416           94 ARPGANILIPRPGYPLYEI---HAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHL  170 (387)
Q Consensus        94 ~~~g~~vl~~~p~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~  170 (387)
                      .++|+.|++....|..+..   .++  ..|.++..+|++.  ++.+|+++++++++++|++|++++++|+||..++.+++
T Consensus        86 ~~~g~~v~~~~~~~~~~~~~~~~~~--~~g~~v~~vp~~~--~~~id~~~l~~~i~~~t~lv~is~v~~~tG~~~~~~~i  161 (376)
T d1eg5a_          86 EKRKRTIITTPIEHKAVLETMKYLS--MKGFKVKYVPVDS--RGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDV  161 (376)
T ss_dssp             TTTCCEEEECTTSCHHHHHHHHHHH--HTTCEEEECCBCT--TSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHH
T ss_pred             cccCcccccccccchhhHHHHHHHH--hcCCEEEEEcCCC--CCeECHHHHHHhcCCCceEEEEECCccccceeeeehhh
Confidence            4677888888888876543   345  6799999999863  45789999999999999999999999999999995555


Q ss_pred             HHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHH
Q 038416          171 QKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSI  250 (387)
Q Consensus       171 ~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~  250 (387)
                      .++.+. ...++++++|.+++.    +.-+..+..++.+   ++++|.+|++|.+|..+.|  .++....  .|.+... 
T Consensus       162 ~~~~~~-~~~~~~~~vD~~q~~----g~~~~d~~~~~~D---~~~~s~~K~~gp~G~~~l~--~~~~~~~--~p~~~g~-  228 (376)
T d1eg5a_         162 TRIVKK-KNKETLVHVDAVQTI----GKIPFSLEKLEVD---YASFSAHKFHGPKGVGITY--IRKGVPI--RPLIHGG-  228 (376)
T ss_dssp             HHHHHH-HCTTCEEEEECTTTT----TTSCCCCTTTCCS---EEEEEGGGGTSCTTCEEEE--ECTTSCC--CCSBCSS-
T ss_pred             hhhhhh-cccCceeEEEeeecc----ccccccccccCcc---ceecccceeecCCCceeEE--eccCccc--CCcccCC-
Confidence            554432 344899999999985    3333344444444   8999999998888864444  4432111  1111000 


Q ss_pred             Hhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-CCCceEEEEEecCcccccCC
Q 038416          251 KGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPV-KPQGAMFVMVKLNVSMLEDI  328 (387)
Q Consensus       251 ~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~  328 (387)
                      ..... ..+..+.............. ................++.+.|+......... ...........++.      
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------  301 (376)
T d1eg5a_         229 GQERGLRSGTQNVPGIVGAARAMEIA-VEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPN------  301 (376)
T ss_dssp             CTTTTTBCSCCCHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECTT------
T ss_pred             CCcccccCCcccchhhhhHHHHhhcc-ccchhhhhhhhhhhhhhhccccccccccccccccccccceeeeccCC------
Confidence            00011 12233333443333333321 22233344444555566666666543222110 11111122233332      


Q ss_pred             CcHHHHHHHHHHhcCeEEEcCCccCC-------------------CCeEEEEee--CChHhHHHHHHHHHHHHH
Q 038416          329 GDDLEFCLKLAKEESVIILPGRTVGM-------------------KNWLRIAFA--AEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       329 ~~~~~~~~~ll~~~gi~v~~g~~~~~-------------------~~~~Ri~~~--~~~e~~~~~~~~l~~~~~  381 (387)
                      .+...+.. .+.++||.+.+|..|..                   .+++|+|++  ++++|++++++.|++++.
T Consensus       302 ~~~~~~~~-~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~  374 (376)
T d1eg5a_         302 IRGSTLQN-LLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILS  374 (376)
T ss_dssp             CCHHHHHH-HHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHH-HHhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence            13444544 45788999988765421                   136999996  489999999999999876

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.90  E-value=7.4e-22  Score=176.93  Aligned_cols=284  Identities=19%  Similarity=0.209  Sum_probs=205.2

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhh--ccCCCceeeeec
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAA--GSNNNLEARHYD  127 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~--~~~~g~~~~~~~  127 (387)
                      +....|++.++++.        ..+..+++++|+.|+..++.+++++||+|+++...|++....+.  ....|+++..++
T Consensus        59 PT~~~LE~~la~LE--------g~~~a~~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d  130 (392)
T d1gc0a_          59 PTLNLLEARMASLE--------GGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVD  130 (392)
T ss_dssp             HHHHHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEEC
T ss_pred             hHHHHHHHHHHHHh--------CCcceeehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCCcccccCC
Confidence            45678888888887        45678889999999999999999999999999999998766655  235688887775


Q ss_pred             cCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccC
Q 038416          128 LLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFG  207 (387)
Q Consensus       128 ~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~  207 (387)
                      .       .|+++++++++++|++|++..|.||+..+.+   +++|+++|+++|+++++|..++.-.+    ..|+ .+.
T Consensus       131 ~-------~d~~~~~~ai~~~t~lv~~Esp~NP~l~v~D---i~~i~~ia~~~g~~~vvDnT~atP~~----~~Pl-~~G  195 (392)
T d1gc0a_         131 M-------ADLQALEAAMTPATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYL----QRPL-ELG  195 (392)
T ss_dssp             T-------TCHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHH----CCGG-GGT
T ss_pred             c-------cCHHHHHHhCCCCCeEEEecccccceeeecc---hHHHHHHHHhcCCEEEEecCccCccc----cChH-HhC
Confidence            3       3789999999999999999999999999977   89999999999999999999985221    1122 233


Q ss_pred             CCccEEEEecCcccccccc-cceEEEEeeCCCCcccchhHHHHHH--hhhh-ccCCcchHHHHHHHHHhhhccHHHHHHH
Q 038416          208 SIVPVITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGFVDSIK--GCLN-AASHPVTFIQAAVPRIVDETNEAFFAKI  283 (387)
Q Consensus       208 ~~~~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~  283 (387)
                      .+   +++.|.+|.++..+ .-.|.+++++        +.+.+.+  ..+. .+..+++...+.+..-++.     +.-+
T Consensus       196 aD---ivihS~TKyi~Ghsd~~~G~v~~~~--------~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~T-----L~lR  259 (392)
T d1gc0a_         196 AD---LVVHSATKYLSGHGDITAGIVVGSQ--------ALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKT-----LNLR  259 (392)
T ss_dssp             CS---EEEEETTTTTTCSSSCCCEEEEECH--------HHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTT-----HHHH
T ss_pred             CC---EEEEecceeecCCcccccccccchh--------HHHHHHHHHHHHHccCCcCChhhHHHHHhcccc-----HHHH
Confidence            33   89999999986444 5566676654        5555543  2233 5678888888888777776     7888


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCC----------------ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEE-
Q 038416          284 IGLLKETADICYERIKEIPCITCPVKPQ----------------GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVII-  346 (387)
Q Consensus       284 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v-  346 (387)
                      .++..+++..+.+.|++.|.+..+.+|.                +|.++.+.+..        +.+.+..++..-.+.. 
T Consensus       260 m~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~--------~~~~~~~f~~~L~l~~~  331 (392)
T d1gc0a_         260 MDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG--------GIGAGRRFMNALQLFSR  331 (392)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT--------HHHHHHHHHHHCSSSEE
T ss_pred             HHHHHHHHHHHHHHHHhCCCccEEeeccccCCcccccccccccCCCcEEEEEEeC--------CHHHHHHHHHhCCcceE
Confidence            8999999999999999887666444441                12234444431        2233333333333321 


Q ss_pred             --EcCCcc----------------------C-CCCeEEEEeeCChHhHHHHHHHHHHHHHH
Q 038416          347 --LPGRTV----------------------G-MKNWLRIAFAAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       347 --~~g~~~----------------------~-~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~  382 (387)
                        .-|+..                      + .++.||||++.  |+.+.+++.|.++|+.
T Consensus       332 a~SlGg~eSLi~~pa~~th~~~~~e~r~~~Gi~~~liRlSVGl--Ed~eDLi~Dl~~AL~a  390 (392)
T d1gc0a_         332 AVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGL--EDIDDLLADVQQALKA  390 (392)
T ss_dssp             CSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHHHH
T ss_pred             eeccCCcChhhcCccccccccCCHHHHHHcCCCcCeEEEEeee--CCHHHHHHHHHHHHHh
Confidence              112111                      0 13679999998  7777788888888765

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.90  E-value=5.3e-21  Score=171.37  Aligned_cols=289  Identities=18%  Similarity=0.192  Sum_probs=205.8

Q ss_pred             CCCC--CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhh--ccCCC
Q 038416           45 CYSP--TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAA--GSNNN  120 (387)
Q Consensus        45 ~y~~--~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~--~~~~g  120 (387)
                      .|+.  .+....|++.++++.        ..+..+++++|+.|+..++.+++++||+|+++...|.+....+.  ....|
T Consensus        56 ~Y~R~~nPT~~~LE~~la~LE--------gg~~a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~G  127 (397)
T d1y4ia1          56 IYTRLGNPTTDALEKKLAVLE--------RGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFG  127 (397)
T ss_dssp             CCCTTSCHHHHHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTT
T ss_pred             eeeCCCCHHHHHHHHHHHHHh--------CCccceeehHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCc
Confidence            4554  345677788888876        34678888999999999999999999999999999987665543  22678


Q ss_pred             ceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCC
Q 038416          121 LEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPY  200 (387)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~  200 (387)
                      +++..++.       .|++.++++++++|++|++..|.||+..+.+   +++++++|+++|+++++|..++.-.    -.
T Consensus       128 i~~~~vd~-------~d~~~~~~~i~~~Tklv~~Esp~NP~l~v~D---i~~i~~iA~~~gi~~vvDnT~atP~----~~  193 (397)
T d1y4ia1         128 INVRFVDA-------GKPEEIRAAMRPETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPY----CQ  193 (397)
T ss_dssp             CEEEEECT-------TSHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTT----TC
T ss_pred             eEeeccCC-------CCHHHHHHhcCCCCcEEEecCCcccceeecc---cHHHHHHhhcCCceEEecCcccCcc----cC
Confidence            88887753       2789999999999999999999999999977   8889999999999999999987422    11


Q ss_pred             ccccccCCCccEEEEecCcccccccc-cceEEEEeeCCCCcccchhHHHHHH--hhhh-ccCCcchHHHHHHHHHhhhcc
Q 038416          201 VPMGVFGSIVPVITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGFVDSIK--GCLN-AASHPVTFIQAAVPRIVDETN  276 (387)
Q Consensus       201 ~~~~~~~~~~~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~l~~~~  276 (387)
                      .|+ .+..+   +++.|.+|.++..+ .=.|.+++++        +.+.+.+  ..+. .+..+++...+.+..-|+.  
T Consensus       194 ~Pl-~~GaD---ivihS~TKyi~Ghsdvl~G~v~~~~--------~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~T--  259 (397)
T d1y4ia1         194 QPL-QLGAD---IVVHSVTKYINGHGDVIGGIIVGKQ--------EFIDQARFVGLKDITGGCMSPFNAWLTLRGVKT--  259 (397)
T ss_dssp             CGG-GGTCS---EEEEETTTTTTCSSCCCCEEEEECH--------HHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTT--
T ss_pred             cch-hcCCC---EEEEehhhhcCCCcceeeeccCCCH--------HHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcCc--
Confidence            222 22333   99999999986544 4455555544        5555443  3333 4677788888777776765  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----------------ceEEEEEecCcccccCCCcHHHHHHHHHH
Q 038416          277 EAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ----------------GAMFVMVKLNVSMLEDIGDDLEFCLKLAK  340 (387)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~  340 (387)
                         +.-+.++..+++..+.+.|++.|.+..+.+|.                .|.++.+.+..        ..+...+++.
T Consensus       260 ---L~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~--------~~~~~~~f~~  328 (397)
T d1y4ia1         260 ---LGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAG--------GLEAGRRMIN  328 (397)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETT--------HHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEEecC--------CHHHHHHHHH
Confidence               77788999999999999999987765555551                23344555532        2333344444


Q ss_pred             hcCeEEE---cCCcc----------------------C-CCCeEEEEeeCChHhHHHHHHHHHHHHHH
Q 038416          341 EESVIIL---PGRTV----------------------G-MKNWLRIAFAAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       341 ~~gi~v~---~g~~~----------------------~-~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~  382 (387)
                      +-.+...   -|+..                      + .++.+|+++++  |+.+.+++.|.+++++
T Consensus       329 ~L~l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRlsvGl--Ed~~DLi~Dl~~AL~~  394 (397)
T d1y4ia1         329 SVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGL--EDPEDIINDLEHAIRK  394 (397)
T ss_dssp             TCSSSEECSCCSCSSCEEECTTTTTTSSSCHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHHHH
T ss_pred             cCCccceeeccCcccceeeCccccccccCCHHHHHHcCCCcCEEEEEecc--CCHHHHHHHHHHHHHH
Confidence            4333221   11110                      0 13579999998  7777778888888765

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=3.1e-21  Score=172.54  Aligned_cols=222  Identities=16%  Similarity=0.110  Sum_probs=168.7

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhh--ccCCCceeeeec
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAA--GSNNNLEARHYD  127 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~--~~~~g~~~~~~~  127 (387)
                      +....|++.++++-        ..+..+++++|+.|+.+ +..++++||+|++..+.|.+....+.  +...|.++..++
T Consensus        49 Pt~~~le~~la~LE--------~~~~a~~fsSGMaAisa-ll~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d  119 (380)
T d1ibja_          49 PTRDALESLLAKLD--------KADRAFCFTSGMAALSA-VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVN  119 (380)
T ss_dssp             HHHHHHHHHHHHHH--------TCSEEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEEC
T ss_pred             hHHHHHHHHHHHHc--------CCceEEehhhHHHHHHH-HHHhhCCCCEEEEEecccccccchhhhhhccccccccccC
Confidence            45678888888877        34678889999999975 56788999999999999998766655  225677766654


Q ss_pred             cCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccC
Q 038416          128 LLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFG  207 (387)
Q Consensus       128 ~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~  207 (387)
                      .       .+++++++++++++++|++..|.||+..+.+   +++|+++|+++|+++|+|+.++...    -..++. +.
T Consensus       120 ~-------~~~~~~~~ai~~~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vVDnT~atP~----~~~Pl~-~G  184 (380)
T d1ibja_         120 T-------TKLDEVAAAIGPQTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPV----LSRPLE-LG  184 (380)
T ss_dssp             T-------TSHHHHHHHCCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTT----TCCGGG-TT
T ss_pred             c-------chHHHHHHHhccCccEEEecccccccccccc---HHHHHHHHHHcCCeEEeeccccccc----cccccc-cC
Confidence            2       3789999999999999999999999999977   8888889999999999999997522    122332 23


Q ss_pred             CCccEEEEecCccccccccc-ceEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHH
Q 038416          208 SIVPVITLGSISKRWIVPGW-RLGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIG  285 (387)
Q Consensus       208 ~~~~~~~i~s~sK~~~~~g~-r~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  285 (387)
                      .+   +++.|.+|.++..+- =.|.++.++       ..+.+.++.... ....++++..+.+..-++.     +.-+.+
T Consensus       185 aD---iVvhS~TKyi~GhsDv~~G~v~~~~-------~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T-----l~lRm~  249 (380)
T d1ibja_         185 AD---IVMHSATKFIAGHSDVMAGVLAVKG-------EKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKT-----MALRIE  249 (380)
T ss_dssp             CS---EEEEETTTTTTCSSCCCCEEEEECS-------HHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTT-----HHHHHH
T ss_pred             CC---EEEecccceeccccCccccccccch-------hhHHHHHHhhccccCCcCCHHHHHHHHhcchh-----hhhhHH
Confidence            33   999999999875553 455555543       145566655543 5667788888877777776     788899


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCC
Q 038416          286 LLKETADICYERIKEIPCITCPVKP  310 (387)
Q Consensus       286 ~~~~~~~~~~~~l~~~~~~~~~~~~  310 (387)
                      +..+++..+.+.|++.|.+..+.+|
T Consensus       250 ~~~~nA~~lA~~L~~hp~V~~V~yP  274 (380)
T d1ibja_         250 KQQENARKIAMYLSSHPRVKKVYYA  274 (380)
T ss_dssp             HHHHHHHHHHHHHHTCTTCCEEECT
T ss_pred             HHHHHHHHHHHHHHhCCCeeEEecc
Confidence            9999999999999988766655454

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=9e-21  Score=169.58  Aligned_cols=288  Identities=18%  Similarity=0.177  Sum_probs=203.9

Q ss_pred             CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhh--ccCCCceeeee
Q 038416           49 TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAA--GSNNNLEARHY  126 (387)
Q Consensus        49 ~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~--~~~~g~~~~~~  126 (387)
                      .+....|++.++++.        ..+..+++++|+.|+..++.+++++||+|++....|.+....+.  ....|..+..+
T Consensus        49 nPt~~~le~~la~LE--------gg~~a~~~sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~  120 (384)
T d1cs1a_          49 NPTRDVVQRALAELE--------GGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFV  120 (384)
T ss_dssp             CHHHHHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEE
T ss_pred             CHHHHHHHHHHHHHh--------CCCceEEecChHHHHHHHHhhcccccceecccccccchhhhhhhhhhcccccccccc
Confidence            346678888888877        35688999999999999999999999999999999987644433  11556666655


Q ss_pred             ccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcccccc
Q 038416          127 DLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVF  206 (387)
Q Consensus       127 ~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~  206 (387)
                      +.       .|.++++++++++|++|++..|.||+..+.+   +++|+++|+++|+++|+|..++...    -..|+ .+
T Consensus       121 d~-------~d~~~~~~~~~~~t~~v~~EspsNP~l~v~D---i~~i~~ia~~~g~~~vVDNT~atP~----~~~Pl-~~  185 (384)
T d1cs1a_         121 DQ-------GDEQALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPA----LQNPL-AL  185 (384)
T ss_dssp             CT-------TCHHHHHHHHHTCCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTT----TCCGG-GG
T ss_pred             cC-------CCHHHHHhhccccccEEEEeccccccceecc---HHHHhhhhhhcCcEEEEeccccCcc----ccccc-cc
Confidence            32       3788999999999999999999999999977   8888889999999999999996422    11222 22


Q ss_pred             CCCccEEEEecCcccccccc-cceEEEEeeCCCCcccchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHH
Q 038416          207 GSIVPVITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKII  284 (387)
Q Consensus       207 ~~~~~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  284 (387)
                      ..+   +++.|.+|.++..| .=.|.++.++       +++.+.++... .....++++..+.+..-|+.     +.-+.
T Consensus       186 GaD---iVvhS~TKyi~Ghsdv~~G~vv~~~-------~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~T-----L~lRm  250 (384)
T d1cs1a_         186 GAD---LVLHSCTKYLNGHSDVVAGVVIAKD-------PDVVTELAWWANNIGVTGGAFDSYLLLRGLRT-----LVPRM  250 (384)
T ss_dssp             TCS---EEEEETTTTTTCSSCCCCEEEEESS-------HHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTT-----HHHHH
T ss_pred             CCC---EEEEccccccccCCCcccccccCCc-------hhhhhhhhhhhhhhhhccccccHHHHhhccch-----hHHHH
Confidence            333   99999999986554 4456566543       24555555543 35667777777777666665     77888


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCC----------------ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEE-
Q 038416          285 GLLKETADICYERIKEIPCITCPVKPQ----------------GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIIL-  347 (387)
Q Consensus       285 ~~~~~~~~~~~~~l~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~-  347 (387)
                      ++..+++..+.+.|++.|.+..+.+|.                .|..+.+.+..        ..+.+.+++++-.+... 
T Consensus       251 ~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~--------~~~~a~~f~~~L~l~~~a  322 (384)
T d1cs1a_         251 ELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG--------DEQTLRRFLGGLSLFTLA  322 (384)
T ss_dssp             HHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS--------CHHHHHHHHHTCSSSEEB
T ss_pred             HHHHHHHHHHHHhcccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecc--------hHHHHHHHHHhCCcceec
Confidence            999999999999999887766555553                24345555532        22333344444333221 


Q ss_pred             --cCCccC-----------------------CCCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          348 --PGRTVG-----------------------MKNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       348 --~g~~~~-----------------------~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                        -|+...                       .++.||+|++.  |+.+.+++.|+++++...
T Consensus       323 ~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGl--Ed~eDLi~Dl~~AL~aa~  382 (384)
T d1cs1a_         323 ESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI--EDGEDLIADLENGFRAAN  382 (384)
T ss_dssp             SCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHHHHHHHT
T ss_pred             cccCCccceeccccccccccCCHHHHHhcCCCcCeEEEEecc--CCHHHHHHHHHHHHHHhc
Confidence              111110                       03579999998  778888888888887754

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.89  E-value=4e-22  Score=178.98  Aligned_cols=321  Identities=12%  Similarity=0.054  Sum_probs=200.7

Q ss_pred             CCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEE
Q 038416           23 LLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILI  102 (387)
Q Consensus        23 ~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~  102 (387)
                      -.+.+|+|++||+++.... ...|.......++|+.++++++       .+..+++|+|+|+|+..++..++..++.+++
T Consensus        12 ~~g~~P~v~~A~~~a~~~~-~~~~~~~~~~~~l~~~la~~~g-------~~~~v~f~~sGt~An~~a~~~~~~~~~~~~~   83 (345)
T d1v72a1          12 IAGASPEVAQALVKHSSGQ-AGPYGTDELTAQVKRKFCEIFE-------RDVEVFLVPTGTAANALCLSAMTPPWGNIYC   83 (345)
T ss_dssp             GCCCCHHHHHHHHHTTSSC-CCSTTCSHHHHHHHHHHHHHHT-------SCCEEEEESCHHHHHHHHHHTSCCTTEEEEE
T ss_pred             CCCCCHHHHHHHHHHhccC-ccccCCCHHHHHHHHHHHHHHC-------CCcEEEECCchHHHHHHHHHHHHhcCCcccc
Confidence            3567999999999876543 3456655667889999999983       2357899999999999999999988888887


Q ss_pred             cCCCCcchHHHhh-ccCCCceeeeeccCCCCCccCChhhHHHhhccC------ce-EEEEeCCCCCccccCCHHHHHHHH
Q 038416          103 PRPGYPLYEIHAA-GSNNNLEARHYDLLPEKRWEVDLDGVEALADEN------TV-AIVIINPGNPCGNVFSYQHLQKIA  174 (387)
Q Consensus       103 ~~p~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~-~v~l~~p~nptG~~~~~~~~~~l~  174 (387)
                      ....+........ ....+..+..++  ...+...+++.+++.+...      +. .++.+.+.|+.|...+.++++++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  161 (345)
T d1v72a1          84 HPASHINNDECGAPEFFSNGAKLMTV--DGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIG  161 (345)
T ss_dssp             CTTSHHHHSSTTHHHHHTTSCEEEEC--CCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHH
T ss_pred             ccccceeeechhhHHHhcCccccccc--ccccccccHHHhhhhhcccccccccccceeeeeeccccccccccchhhhhHH
Confidence            7766654332211 002344444433  2344567999999988653      22 345556678889999999999999


Q ss_pred             HHHHhcCcEEeecccccccccCCCCCcc-ccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHh-
Q 038416          175 RTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKG-  252 (387)
Q Consensus       175 ~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~-  252 (387)
                      ++|+++|+++++|+++....+....... ....... ......+.+|. +...  .+.......       ........ 
T Consensus       162 ~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~~~~-------~~~~~~~~~  230 (345)
T d1v72a1         162 DVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAG-VDALSFGATKN-GVLA--AEAIVLFNT-------SLATEMSYR  230 (345)
T ss_dssp             HHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGT-CCEEEECCGGG-TCSS--CEEEEESSG-------GGHHHHHHH
T ss_pred             HHHHhcCceeeecccccceeccccccCHHHhhcccc-ccccccCcccc-cccc--ccccccchh-------hhhhhcccc
Confidence            9999999999999999864433211111 1111111 12333334443 2222  233333321       12222222 


Q ss_pred             hhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHH
Q 038416          253 CLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDL  332 (387)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  332 (387)
                      ......+.+.....+.... ....+....+......++.+.+.+.+.+++++.+. .|..+++++++++.          
T Consensus       231 ~~~~~~~~~~~~~aa~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~-~p~~~niv~~~~~~----------  298 (345)
T d1v72a1         231 RKRAGHLSSKMRFLSAQID-AYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVL-GGTEANILFCRLDS----------  298 (345)
T ss_dssp             HHHTTCCCSSTHHHHHHHH-HHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEE-SCCCSSEEEEEECH----------
T ss_pred             ccccccccchhhHHhhhhH-HHHHHhhhhhhccchhhHHHHHHHHHHhcCCcEec-cCCCccEEEEEcCH----------
Confidence            1222222223222222222 21222334555566667777778888889888844 67778888887752          


Q ss_pred             HHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHH
Q 038416          333 EFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAF  379 (387)
Q Consensus       333 ~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~  379 (387)
                      ..++.| .++|+.+.++.  ..++.+||+++  +++||++++++.|+++
T Consensus       299 ~~~~~L-~~~gi~v~~~~--~~~~~lR~~~~~~~T~edid~~le~lr~a  344 (345)
T d1v72a1         299 AMIDAL-LKAGFGFYHDR--WGPNVVRFVTSFATTAEDVDHLLNQVRLA  344 (345)
T ss_dssp             HHHHHH-HHTTCBCBCSS--SSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred             HHHHHH-HHcCCCccccC--CCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            355555 45598876543  13578999995  5899999999998764

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=4.3e-20  Score=165.96  Aligned_cols=247  Identities=13%  Similarity=0.138  Sum_probs=176.8

Q ss_pred             CCCCcHHHHHHHHHHhcCCCCCCCCC--CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeE
Q 038416           23 LLSDSTVAEDAVVDALRTAHYNCYSP--TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANI  100 (387)
Q Consensus        23 ~~~~~~~v~~a~~~~~~~~~~~~y~~--~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~v  100 (387)
                      .+...+...++........  ..|+.  .+....|++.++++-        ..+..+++++|+.|+..++.+++++||+|
T Consensus        31 ~f~~~~~~~~~~~~~~~~~--~~Y~R~~nPt~~~le~~la~LE--------g~~~a~~~~SGMaAi~~~l~~l~~~Gd~i  100 (391)
T d1cl1a_          31 VFDSVEAKKHATRNRANGE--LFYGRRGTLTHFSLQQAMCELE--------GGAGCVLFPCGAAAVANSILAFIEQGDHV  100 (391)
T ss_dssp             CCSSHHHHHHHHHTTTTTC--CCCTTTCCHHHHHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHCCTTCEE
T ss_pred             eeCCHHHHHHHhcCCccCc--eEeECCCChhHHHHHHHHHHHh--------CCccEEEeccccceeeehhhcccCCCCeE
Confidence            3455554444443322222  23444  345677888888876        45789999999999999999999999999


Q ss_pred             EEcCCCCcchHHHhh--ccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHH
Q 038416          101 LIPRPGYPLYEIHAA--GSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTAR  178 (387)
Q Consensus       101 l~~~p~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~  178 (387)
                      ++....|.+....+.  ....|+++..++.       .|.+++++++++++++|++..|.||+..+.+   +++++++|+
T Consensus       101 v~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~-------~d~~~~~~~i~~~t~~i~~EtpsNP~l~v~D---i~~i~~~a~  170 (391)
T d1cl1a_         101 LMTNTAYEPSQDFCSKILSKLGVTTSWFDP-------LIGADIVKHLQPNTKIVFLESPGSITMEVHD---VPAIVAAVR  170 (391)
T ss_dssp             EEETTSCHHHHHHHHHTGGGGTCEEEEECT-------TCGGGGGGTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHH
T ss_pred             EEecccccchhhhhhhcccccccccccccC-------ccccccccccccccceeeecccCcccccccc---cHHHHHHHH
Confidence            999999998766655  2356777776642       2678899999999999999999999999987   666777775


Q ss_pred             h--cCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccc-cceEEEEeeCCCCcccchhHHHHHHhhh-
Q 038416          179 N--LGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGFVDSIKGCL-  254 (387)
Q Consensus       179 ~--~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~~~~~~-  254 (387)
                      +  +|+++|+|+.++....    ..|+. +..+   +++.|.+|.++..+ .=.|.++.++        ++.+.+.... 
T Consensus       171 ~~~~g~~~vVDnT~atP~~----~~Pl~-~GaD---ivvhS~TKy~~GhsdvlgG~vv~~~--------~~~~~~~~~~~  234 (391)
T d1cl1a_         171 SVVPDAIIMIDNTWAAGVL----FKALD-FGID---VSIQAATKYLVGHSDAMIGTAVCNA--------RCWEQLRENAY  234 (391)
T ss_dssp             HHCTTCEEEEECTTTTTTS----SCGGG-GTCS---EEEEETTTTTTCSSSCCCEEEEECT--------TTHHHHHHHHH
T ss_pred             hccCCcEEEEeccccchhh----hcccc-cccc---eEEeecchhccccccccccceeccc--------cccccchhhhh
Confidence            5  5999999999985221    12222 2333   99999999986544 3455555543        4455555443 


Q ss_pred             hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 038416          255 NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKP  310 (387)
Q Consensus       255 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  310 (387)
                      ......++...+.+..-++.     +.-+.++..+++..+.+.|++.|.+..+.+|
T Consensus       235 ~~G~~~~p~~a~ll~rgl~T-----L~lR~~~~~~nA~~vA~~L~~hp~V~~V~yP  285 (391)
T d1cl1a_         235 LMGQMVDADTAYITSRGLRT-----LGVRLRQHHESSLKVAEWLAEHPQVARVNHP  285 (391)
T ss_dssp             HTTCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECT
T ss_pred             cccccCCchhhhhhhccchh-----HHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence            35567777777766666665     7788899999999999999988766655454

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.88  E-value=4.3e-20  Score=165.72  Aligned_cols=289  Identities=16%  Similarity=0.111  Sum_probs=200.3

Q ss_pred             CCCC--CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhh--ccCCC
Q 038416           45 CYSP--TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAA--GSNNN  120 (387)
Q Consensus        45 ~y~~--~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~--~~~~g  120 (387)
                      .|+.  .+....|++.++++.        ..+..+++++|+.|+..++.+++++||+|++....|.+....+.  ....|
T Consensus        60 ~Y~R~~nPt~~~LE~~la~LE--------gg~~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~g  131 (398)
T d1qgna_          60 EYGRYGNPTTVVLEEKISALE--------GAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMG  131 (398)
T ss_dssp             CBGGGCCHHHHHHHHHHHHHH--------TCSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGT
T ss_pred             eecCCCChHHHHHHHHHHHHh--------CCceEEEecCcchHHHHHHhhcccccccccccccccchhhhhhcccccccc
Confidence            4554  345678888888877        45688999999999999999999999999999999998765544  22567


Q ss_pred             ceeeeeccCCCCCccCChhhH-HHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCC
Q 038416          121 LEARHYDLLPEKRWEVDLDGV-EALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTP  199 (387)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~  199 (387)
                      .++..++.       .+.++. ++.+++++++|++..|.||+..+.+   +++|+++|+++|+++|+|..++.-.    .
T Consensus       132 i~~~~~~~-------~~~~~~~~~~~~~~t~~v~~EspsNP~l~v~D---i~~ia~ia~~~g~~~vVDnT~atP~----~  197 (398)
T d1qgna_         132 ITATVIDP-------ADVGALELALNQKKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPL----N  197 (398)
T ss_dssp             CEEEEECS-------SCHHHHHHHHHHSCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTT----T
T ss_pred             cccccccc-------cchhhhhhhhccccceEEEccCccccccccch---HHHHHHHHhhcCCEEEecceeeccc----c
Confidence            77666642       234444 4456789999999999999999977   8899999999999999999987422    1


Q ss_pred             CccccccCCCccEEEEecCcccccccccc-eEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhhccH
Q 038416          200 YVPMGVFGSIVPVITLGSISKRWIVPGWR-LGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDETNE  277 (387)
Q Consensus       200 ~~~~~~~~~~~~~~~i~s~sK~~~~~g~r-~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~  277 (387)
                      ..++ .+..+   +++.|.+|.++..+-- .|.+..+.        +++..++.... .+...++...+.+..-++.   
T Consensus       198 ~~Pl-~~GaD---iVihS~TKy~~Ghsdv~~G~v~~~~--------~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T---  262 (398)
T d1qgna_         198 QKAL-ALGAD---LVLHSATKFLGGHNDVLAGCISGPL--------KLVSEIRNLHHILGGALNPNAAYLIIRGMKT---  262 (398)
T ss_dssp             CCTT-TTTCS---EEEECTTTTTTCSSSCCCEEEEECH--------HHHHHHHHHHHHHCCCCCHHHHHHHHHHGGG---
T ss_pred             CCch-hhCCC---EEEEechhhcCcccceeehhhcchh--------hhhhhhhhhcccCCCcCCHHHHHHHHhcchH---
Confidence            1222 22333   8999999998765533 44444432        56666666543 5677888888877777766   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----------------ceEEEEEecCcccccCCCcHHHHHHHHHHh
Q 038416          278 AFFAKIIGLLKETADICYERIKEIPCITCPVKPQ----------------GAMFVMVKLNVSMLEDIGDDLEFCLKLAKE  341 (387)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~  341 (387)
                        +.-+.++..+++..+.+.|++.|.+..+.+|.                .|..+.+.+..        +.+.+.+++.+
T Consensus       263 --L~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g--------~~~~a~~f~~~  332 (398)
T d1qgna_         263 --LHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDG--------DLLTTAKFVDA  332 (398)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESS--------CHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecC--------CHHHHHHHHHc
Confidence              78888999999999999999887766554542                13344444432        12222333333


Q ss_pred             cCeEE---EcCCccC-----------------------CCCeEEEEeeCChHhHHHHHHHHHHHHHH
Q 038416          342 ESVII---LPGRTVG-----------------------MKNWLRIAFAAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       342 ~gi~v---~~g~~~~-----------------------~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~  382 (387)
                      -.+..   .-|+...                       .++.||+|++.  |+.+.+++.|+++|++
T Consensus       333 L~l~~~a~SlGg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGl--Ed~eDLi~Dl~~AL~~  397 (398)
T d1qgna_         333 LKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGV--EDFDDLKADILQALDS  397 (398)
T ss_dssp             CSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCS--SCHHHHHHHHHHHHHH
T ss_pred             CCcceeeeCCCCCcceeeCcchhccccCCHHHHHhcCCCcCEEEEEecc--CCHHHHHHHHHHHHhc
Confidence            33221   1121110                       03679999998  6677778888888765

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.88  E-value=5.7e-21  Score=173.26  Aligned_cols=327  Identities=16%  Similarity=0.106  Sum_probs=204.3

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCC--CCCcHHHHHHHHHHHhhcCCCCCCCCC--EEEcCChHHHHHHHHHhhcCCCCe
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSP--TLGVPSARRGIADYLNRDLPYKLSPED--VYLTLGCSQAIEISLSVLARPGAN   99 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~--~~~~~~lr~~ia~~~~~~~~~~~~~~~--i~~~~g~~~a~~~~~~~l~~~g~~   99 (387)
                      -++++.|++||...    ..+++++  ....++.|+.+++++      ++++++  +++++|+|.++++++..+..+++.
T Consensus         9 ~~~~~~V~~A~~~~----~~~~~~~~~~~~~~~~r~~l~~l~------~~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~   78 (361)
T d1m32a_           9 LTTSRTVKEAMLFD----SCTWDDDYNIGVVEQIRQQLTALA------TASEGYTSVLLQGSGSYAVEAVLGSALGPQDK   78 (361)
T ss_dssp             CCCCHHHHHTTCCC----CCTTSHHHHTTTHHHHHHHHHHHH------CSSSSEEEEEEESCHHHHHHHHHHHSCCTTCC
T ss_pred             CCCCHHHHHHhhhh----ccCCCcHHHHHHHHHHHHHHHHHh------CCCCCCEEEEECCCHHHHHHHHHHHhhhhccc
Confidence            46788888776432    2233332  245678999999998      455554  778899999999999999988877


Q ss_pred             EEEcCCCCcc--hHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHH
Q 038416          100 ILIPRPGYPL--YEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTA  177 (387)
Q Consensus       100 vl~~~p~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~  177 (387)
                      +++....++.  ......  ..+.....+..........+.+.......++++++.+++.+|.||...|   +++|.++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~---i~~i~~~~  153 (361)
T d1m32a_          79 VLIVSNGAYGARMVEMAG--LMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNP---IDEVGALA  153 (361)
T ss_dssp             EEEEESSHHHHHHHHHHH--HHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC---HHHHHHHH
T ss_pred             cceeeehhhhhhHHHHhh--hhhcccccccccccCCccchhhHHHHHhccCccceEEEeeecccccchh---hhhhhhhh
Confidence            7766655543  222333  3444444444333322223344445556778999999999999999988   78888999


Q ss_pred             HhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCccccc-ccccceEEEEeeCCCC---------cccchhHH
Q 038416          178 RNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWI-VPGWRLGWLVTSDPNG---------ILQNSGFV  247 (387)
Q Consensus       178 ~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~-~~g~r~G~i~~~~~~~---------~~~~~~~~  247 (387)
                      +++|+++++|.+++.    |..+..+..+..   .+++.|.+|+++ .+|  +|+++.++...         ........
T Consensus       154 ~~~g~~~~vDa~qs~----G~~~~d~~~~~~---D~~~~s~~K~l~gp~G--~g~l~~~~~~~~~~~~~~~~~~~~~~~~  224 (361)
T d1m32a_         154 HRYGKTYIVDAMSSF----GGIPMDIAALHI---DYLISSANKCIQGVPG--FAFVIAREQKLAACKGHSRSLSLDLYAQ  224 (361)
T ss_dssp             HHHTCEEEEECTTTT----TTSCCCTTTTTC---SEEEEESSSTTCCCSS--EEEEEEEHHHHTTCTTCCSCSTTCHHHH
T ss_pred             cccceeeEeeccccc----Cccccccccccc---ceEEeeecccccCCCC--ceEEEechhhhhhhccccccccccchhh
Confidence            999999999999995    223333444444   388999999874 456  78888764110         00000011


Q ss_pred             HHHHh-h-hhccCCcchHHHHHHHHHhhhccH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC--ceEEEEEecCc
Q 038416          248 DSIKG-C-LNAASHPVTFIQAAVPRIVDETNE-AFFAKIIGLLKETADICYERIKEIPCITCPVKPQ--GAMFVMVKLNV  322 (387)
Q Consensus       248 ~~~~~-~-~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~g~~~~~~~~~  322 (387)
                      ..... . .....+++.....++...+....+ .......++.....+.+.+.++.. ++.....+.  ....+.+.++.
T Consensus       225 ~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~rs~~v~~~~~p~  303 (361)
T d1m32a_         225 WRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDDELHSPIITAFYSPE  303 (361)
T ss_dssp             HHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCC
T ss_pred             hccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhc-CCcccCChhhcCCcEEEEECCC
Confidence            11111 1 123345666666666555554332 334455566666777777777776 444232322  12233444543


Q ss_pred             ccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChHhHHHHHHHHHHHH
Q 038416          323 SMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPATLEDGLERIKAFC  380 (387)
Q Consensus       323 ~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~  380 (387)
                      ..  + .+..++...+ .++||.+.+|.. ..++++||++  ..+++|++++++.|+++|
T Consensus       304 ~~--~-~~~~~~~~~l-~~~gi~i~~G~~-~~~~~~Ris~~g~~~~~di~~lv~al~~~L  358 (361)
T d1m32a_         304 DP--Q-YRFSEFYRRL-KEQGFVIYPGKV-SQSDCFRIGNIGEVYAADITALLTAIRTAM  358 (361)
T ss_dssp             CT--T-CCHHHHHHHH-HHTTEECEECCC-SSSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred             CC--C-CCHHHHHHHH-HHCCcEEECCCc-CCCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence            11  1 1345566655 667999988753 3367899996  368899999999998875

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.6e-20  Score=171.67  Aligned_cols=323  Identities=15%  Similarity=0.078  Sum_probs=209.9

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCC--CCCCCCCEEEcCChHHHHHHHHHhhc---CCCCe
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLP--YKLSPEDVYLTLGCSQAIEISLSVLA---RPGAN   99 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~--~~~~~~~i~~~~g~~~a~~~~~~~l~---~~g~~   99 (387)
                      +.++.|++||..    ...+++++  ...++.+.+.+.+++.++  .+.+++.|++|+|+|+++++++.++.   ++||+
T Consensus        13 ~v~~~V~~Am~~----~~~~hr~~--~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~   86 (382)
T d2bkwa1          13 ILSGAVQKALDV----PSLGHTSP--EFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKN   86 (382)
T ss_dssp             CCCHHHHHTTSC----CCCCTTSH--HHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCE
T ss_pred             CCCHHHHHHhCc----ccCCCCcH--HHHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCc
Confidence            678888887632    22334443  223333334444444343  23456789999999999999999986   67999


Q ss_pred             EEEcCCCCcch--HHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc-cCceEEEEeCCCCCccccCCHHHHHHHHHH
Q 038416          100 ILIPRPGYPLY--EIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD-ENTVAIVIINPGNPCGNVFSYQHLQKIART  176 (387)
Q Consensus       100 vl~~~p~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~v~l~~p~nptG~~~~~~~~~~l~~~  176 (387)
                      |++....+++.  ....+  ..+.....+... ..+...+.+.+++.+. ++++++++++.++.||+..+   +.++.+.
T Consensus        87 vlv~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~---~~~~~~~  160 (382)
T d2bkwa1          87 VLVVSTGTFSDRFADCLR--SYGAQVDVVRPL-KIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSD---LKAISQA  160 (382)
T ss_dssp             EEEECSSHHHHHHHHHHH--HTTCEEEEECCS-STTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC---HHHHHHH
T ss_pred             eEEEEechhhhhhhhhcc--cccccccccccc-CCCCccchhHHHHHhhhccchheeeeecccccccccc---chhhhhh
Confidence            99988887753  34445  677776665432 2344577888877664 46789999999999999988   5555555


Q ss_pred             HHhc--CcEEeecccccccccCCCCCccccccCCCccEEEEecCcccc-cccccceEEEEeeCCCCcccchhHHHHHHh-
Q 038416          177 ARNL--GIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRW-IVPGWRLGWLVTSDPNGILQNSGFVDSIKG-  252 (387)
Q Consensus       177 ~~~~--~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~-~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~-  252 (387)
                      |+++  ++++++|.+++.    |..+..+.....+   +++.|.+|++ +.+|  +|+++.++        +.++.... 
T Consensus       161 ~~~~~~~~~~~vDa~qs~----g~~pid~~~~giD---~~~~s~~K~l~gP~G--~g~l~vs~--------~~~~~~~~~  223 (382)
T d2bkwa1         161 IKQTSPETFFVVDAVCSI----GCEEFEFDEWGVD---FALTASQKAIGAPAG--LSISLCSS--------RFMDYALND  223 (382)
T ss_dssp             HHHHCTTSEEEEECTTTT----TTSCCCTTTTTCS---EEEEESSSTTCCCSC--EEEEEECH--------HHHHHHTCH
T ss_pred             ccccccceeeeeeccccc----ccccccccccCee---EEeecccccCcCCCc--hhhhhccH--------HHHhhhhhc
Confidence            5554  599999999985    3333444444444   8899999998 5677  78888875        33332211 


Q ss_pred             ----------------------h----hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 038416          253 ----------------------C----LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITC  306 (387)
Q Consensus       253 ----------------------~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  306 (387)
                                            .    ....++++.....++..+|+...++.+..+.++.+++++.++..+....++..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~  303 (382)
T d2bkwa1         224 SKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTS  303 (382)
T ss_dssp             HHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEE
T ss_pred             ccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccccc
Confidence                                  1    12345777778888888888766667777778888888888888776433332


Q ss_pred             CC-CCCc---eEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCcc-CCCCeEEEE-ee--CChHhHHHHHHHHHH
Q 038416          307 PV-KPQG---AMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTV-GMKNWLRIA-FA--AEPATLEDGLERIKA  378 (387)
Q Consensus       307 ~~-~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~-~~~~~~Ri~-~~--~~~e~~~~~~~~l~~  378 (387)
                      .. .+..   .....+.++        +..++.. +++++||.+.+|... ..++.|||+ ++  .++++++.+++.|..
T Consensus       304 ~~~~~~~~~s~~v~~~~~~--------~~~~~~~-~L~~~gi~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~  374 (382)
T d2bkwa1         304 VSRYPSNMSAHGLTAVYVA--------DPPDVIA-FLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDL  374 (382)
T ss_dssp             SSCSSSTTBCSSCEEEECS--------CHHHHHH-HHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHH
T ss_pred             cccCchhccCCcEEEEcCC--------CHHHHHH-HHHHCCeEEECCCChhhcCCEEEEeCCcCCCCHHHHHHHHHHHHH
Confidence            21 1111   112233443        3445544 457889999988653 235789999 44  346777777777766


Q ss_pred             HHHHhhh
Q 038416          379 FCQRHAK  385 (387)
Q Consensus       379 ~~~~~~~  385 (387)
                      +...+++
T Consensus       375 i~~~L~~  381 (382)
T d2bkwa1         375 IKLALQR  381 (382)
T ss_dssp             HHHHTTC
T ss_pred             HHHHHCc
Confidence            5555554

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=2.1e-20  Score=172.99  Aligned_cols=353  Identities=15%  Similarity=-0.010  Sum_probs=233.6

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCC---CEEEcCChHHHHHHHHHhhcC------
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPE---DVYLTLGCSQAIEISLSVLAR------   95 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~---~i~~~~g~~~a~~~~~~~l~~------   95 (387)
                      ..+|.+.+.|.+.+..+ ...+...+...++++.+.+++.+.++.+...+   .=.+|+|+|+|+..++.+...      
T Consensus        65 ~~~~~~~~l~~~~~~~N-~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~  143 (450)
T d1pmma_          65 WDDENVHKLMDLSINKN-WIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRM  143 (450)
T ss_dssp             CCCHHHHHHHHHTTTCB-TTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcC-CCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHh
Confidence            46778888888877654 33444334557889999999998888654322   247899999999998877531      


Q ss_pred             -----CC-CeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHH
Q 038416           96 -----PG-ANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQH  169 (387)
Q Consensus        96 -----~g-~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~  169 (387)
                           .+ ..+++....|.++...++  ..|+++..+++++ .++.+|+++|+++++++|.+|+.+.+++.||.+=|.++
T Consensus       144 ~~~g~~~~~~~~~~~~~H~s~~Kaa~--~~gi~~~~v~~~~-~~~~~d~~~L~~~i~~~t~~Vv~t~gtt~tG~~dpv~~  220 (450)
T d1pmma_         144 EAAGKPTDKPNLVCGPVQICWHKFAR--YWDVELREIPMRP-GQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQP  220 (450)
T ss_dssp             HHHTCCCSCCEEEESSCCHHHHHHHH--HTTCEEEECCCBT-TBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHH
T ss_pred             hhcCCCCCCceEEecccHHHHHHHHH--HcCCCceEeeecC-CCCcCcHHHHHHHhhhCceEEEeeeeeccCCCccccch
Confidence                 12 357778889999999999  9999999999865 45789999999999999999999999999999988776


Q ss_pred             HHHHHH---HHHhcCcEEeeccccccccc--CCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccch
Q 038416          170 LQKIAR---TARNLGIIVIADEVYNHLAF--GSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNS  244 (387)
Q Consensus       170 ~~~l~~---~~~~~~~~li~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~  244 (387)
                      +.++.+   .|+++|+++++|.+++++..  ..........+  ..-..+..|.+|++ .....+||++.+++..+....
T Consensus       221 i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~--~~aDSi~~s~HK~~-~~p~g~g~l~~r~~~~~~~~~  297 (450)
T d1pmma_         221 LHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRL--PRVKSISASGHKFG-LAPLGCGWVIWRDEEALPQEL  297 (450)
T ss_dssp             HHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEETTTTT-CCCSSCEEEEESSGGGSCGGG
T ss_pred             hhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhhcc--cceeEeecChhhcc-CCCCCeeEEEecChhhhhhhc
Confidence            665554   46789999999999987542  21111111111  12235667999984 444668999998744221100


Q ss_pred             hH-HHHHH-hhhhcc--CCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC--CCc-eEEEE
Q 038416          245 GF-VDSIK-GCLNAA--SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVK--PQG-AMFVM  317 (387)
Q Consensus       245 ~~-~~~~~-~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~-g~~~~  317 (387)
                      .+ ..++. .....+  ++-+......+...+.......+.+..++..++++++.+.|+++++++++..  |.. -..+.
T Consensus       298 ~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~  377 (450)
T d1pmma_         298 VFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVC  377 (450)
T ss_dssp             CEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEE
T ss_pred             ccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEE
Confidence            00 00000 000111  1112222333343445455678899999999999999999999988775421  222 22345


Q ss_pred             EecCcccccCCCcHHHHHHHHHHhcCeEEEcCCcc---CCCCeEEEEe--eCChHhHHHHHHHHHHHHHHhhhc
Q 038416          318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTV---GMKNWLRIAF--AAEPATLEDGLERIKAFCQRHAKK  386 (387)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~---~~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~~~~  386 (387)
                      +++.....+++ +..++...| +++|..+......   .....+|+.+  +.+++.++.+++.|++++++++++
T Consensus       378 Fr~~~~~~~~~-~~~~l~~~L-~~~Gw~v~~~~~p~~~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~v~~l~~~  449 (450)
T d1pmma_         378 FKLKDGEDPGY-TLYDLSERL-RLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDH  449 (450)
T ss_dssp             EEECTTCCCSS-CHHHHHHHH-HTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EecCCcccCCC-CHHHHHHHH-HHcCCeeeccCcCCCcCCcEEEEEEccCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            55543222222 445565555 6778665321111   1134699999  458899999999999999998764

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=1.8e-20  Score=168.14  Aligned_cols=323  Identities=16%  Similarity=0.109  Sum_probs=209.7

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCCC--CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEE
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSPT--LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANIL  101 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~~--~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl  101 (387)
                      .+.++.|++||.+..    .++++..  .-..+.++.+++++    +  .+.+.+++++|+|.++++++..++++|++|+
T Consensus         9 ~~v~~~V~~am~~~~----~~hr~~~f~~i~~~~~~~l~~ll----~--~~~~~i~~~gsgT~a~e~~~~nl~~~g~~vl   78 (348)
T d1iuga_           9 VRLHPKALEALARPQ----LHHRTEAAREVFLKARGLLREAF----R--TEGEVLILTGSGTLAMEALVKNLFAPGERVL   78 (348)
T ss_dssp             CCCCHHHHHHHHSCC----CCTTSHHHHHHHHHHHHHHHHHH----T--CSSEEEEEESCHHHHHHHHHHHHCCTTCEEE
T ss_pred             CCCCHHHHHHhcCCC----CCCCCHHHHHHHHHHHHHHHHHh----C--CCCCEEEEeCchHHHHHHHHHhcccccccce
Confidence            478899998876532    3344431  12344455555555    2  4556788999999999999999999999999


Q ss_pred             EcCCCCcc--hHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHh
Q 038416          102 IPRPGYPL--YEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARN  179 (387)
Q Consensus       102 ~~~p~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~  179 (387)
                      +...++++  +...++  ..+.++..+.....  ..++++.   ..+++.+.+++++..+.||+..|   ++++.++|++
T Consensus        79 v~~~G~f~~~~~~~a~--~~~~~~~~~~~~~g--~~~~~~~---~~~~~~~~v~~~h~eTstG~~~~---i~~i~~~~~~  148 (348)
T d1iuga_          79 VPVYGKFSERFYEIAL--EAGLVVERLDYPYG--DTPRPED---VAKEGYAGLLLVHSETSTGALAD---LPALARAFKE  148 (348)
T ss_dssp             EEECSHHHHHHHHHHH--HTTCEEEEEECCTT--CCCCTTT---SCCSSCSEEEEESEETTTTEECC---HHHHHHHHHH
T ss_pred             eecchHHHHHHHHHHH--hcCcccccccccCC--Ccccccc---ccccCCCeeEEEecchhhhhhcc---HHHHHHHHHh
Confidence            98888764  455666  78888777765322  2334333   33567889999999999999988   6777778877


Q ss_pred             cC--cEEeecccccccccCCCCCccccccCCCccEEEEecCcccc-cccccceEEEEeeCCCCc-cc----chhHHHHHH
Q 038416          180 LG--IIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRW-IVPGWRLGWLVTSDPNGI-LQ----NSGFVDSIK  251 (387)
Q Consensus       180 ~~--~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~-~~~g~r~G~i~~~~~~~~-~~----~~~~~~~~~  251 (387)
                      ++  .++++|.+.+...    .+.++.....+   +++.|..|++ +.+|  +|+++.++...- .+    .-++...+.
T Consensus       149 ~~~~~l~~vDavss~g~----~~i~~d~~~iD---~~~~~sqK~l~gppG--~~~v~~s~~~le~~~~~~~~~dl~~~~~  219 (348)
T d1iuga_         149 KNPEGLVGADMVTSLLV----GEVALEAMGVD---AAASGSQKGLMCPPG--LGFVALSPRALERLKPRGYYLDLARELK  219 (348)
T ss_dssp             HCTTCEEEEECTTTBTT----BCCCSGGGTCS---EEEEESSSTTCCCSC--EEEEEECHHHHHTCCCCSSTTCHHHHHH
T ss_pred             hhccceeechhhhcccc----cccccccccCC---EEEeccccceecCCc--eeeeeechHHHhhhcccccccchhhhhh
Confidence            74  7889999988522    22333333333   8888999998 6777  688888642100 00    002222222


Q ss_pred             hh--hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCC
Q 038416          252 GC--LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIG  329 (387)
Q Consensus       252 ~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  329 (387)
                      ..  ..+.++++.....++.++|+...+. ..+..++.+..++.++..++.. ++.............+.+|..     .
T Consensus       220 ~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-gl~~~~~~~s~~v~~~~~P~g-----~  292 (348)
T d1iuga_         220 AQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEG-GLRPVPKRFSPAVAAFYLPEG-----V  292 (348)
T ss_dssp             HHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHT-TCEESCSSBCTTCEEEECCTT-----C
T ss_pred             hhccCcccccccchHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhhhhhhh-hhccChhhcCCeEEEEECCCC-----C
Confidence            22  2245678888888888888754333 3334444444455555555554 555321111111344555532     2


Q ss_pred             cHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe-e-CChHhHHHHHHHHHHHHHHh
Q 038416          330 DDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF-A-AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       330 ~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~-~-~~~e~~~~~~~~l~~~~~~~  383 (387)
                      +..++...+ +++|+.+.+|.....+..|||+. + .+.++++.+++.|++++++.
T Consensus       293 ~~~~~~~~l-~~~gi~i~~G~~~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~~  347 (348)
T d1iuga_         293 PYARVKEAF-AQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI  347 (348)
T ss_dssp             CHHHHHHHH-HTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHH-HHCCeEEEcCccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            556666655 77899999987655567899998 3 57899999999999999875

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=1.2e-19  Score=163.77  Aligned_cols=237  Identities=19%  Similarity=0.133  Sum_probs=168.5

Q ss_pred             CCCC--CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhh--ccCCC
Q 038416           45 CYSP--TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAA--GSNNN  120 (387)
Q Consensus        45 ~y~~--~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~--~~~~g  120 (387)
                      .|+.  .+....|++.|+++.        ..+..+++++|+.|+..++.+++++||+|+++.+.|++....+.  ....|
T Consensus        51 ~YsR~~nPT~~~LE~~la~LE--------~~~~a~~~~SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~g  122 (421)
T d2ctza1          51 IYSRIMNPTVDVLEKRLAALE--------GGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLG  122 (421)
T ss_dssp             SCBTTBCHHHHHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTT
T ss_pred             eecCCCCHHHHHHHHHHHHHh--------CCCeEEEecChHHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhhcc
Confidence            3444  346678888888877        45678899999999999999999999999999999988765555  22577


Q ss_pred             ceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCC
Q 038416          121 LEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPY  200 (387)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~  200 (387)
                      +++..++..      ...+..++.++++|++|++..|.||+..+.+   +++|+++|+++|+++|+|+.++..-+   ..
T Consensus       123 i~~~~~d~~------~~~~~~~~~~~~~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vvDnT~a~tP~---~~  190 (421)
T d2ctza1         123 IEVRFTSRE------ERPEEFLALTDEKTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGGY---LL  190 (421)
T ss_dssp             CEEEECCTT------CCHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGT---SC
T ss_pred             ccceecccc------cCcchhccccCCCceEEEEcCCCcceeEecc---hHHHHHHHHhcCCceEecccccccce---ec
Confidence            777766431      1356667778899999999999999999977   89999999999999999999872100   11


Q ss_pred             ccccccCCCccEEEEecCcccccccccc-eEEEEeeCCCCcc-----------------------cchhHHHHHHhh--h
Q 038416          201 VPMGVFGSIVPVITLGSISKRWIVPGWR-LGWLVTSDPNGIL-----------------------QNSGFVDSIKGC--L  254 (387)
Q Consensus       201 ~~~~~~~~~~~~~~i~s~sK~~~~~g~r-~G~i~~~~~~~~~-----------------------~~~~~~~~~~~~--~  254 (387)
                      .|+ .+..+   +++.|.+|.++..+-- .|.++.++.....                       ++..++.+.+..  +
T Consensus       191 ~Pl-~~GaD---iVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (421)
T d2ctza1         191 RPL-AWGAA---LVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLR  266 (421)
T ss_dssp             CGG-GGTCS---EEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHH
T ss_pred             ccc-ccCCc---EEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHH
Confidence            222 23333   9999999998765544 4555544321110                       000112222211  1


Q ss_pred             hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 038416          255 NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKP  310 (387)
Q Consensus       255 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  310 (387)
                      ..+..++|+..+.+..-|+.     +.-+.++..+++..+.+.|++.|.+..+.+|
T Consensus       267 ~~G~~~sP~~a~l~~rgl~T-----L~lRm~~~~~nA~~vA~~L~~hp~V~~V~yP  317 (421)
T d2ctza1         267 DQGQALGPFEAWVVLLGMET-----LSLRAERHVENTLHLAHWLLEQPQVAWVNYP  317 (421)
T ss_dssp             HHCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECT
T ss_pred             hccCCCCHHHHHHHhcCCcc-----hhhHHHHHHHHHHHHHhhhccCCCeeEEecC
Confidence            24667788887777776766     7888899999999999999998776555455

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.87  E-value=2e-21  Score=173.23  Aligned_cols=318  Identities=13%  Similarity=0.106  Sum_probs=189.7

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEc
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIP  103 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~  103 (387)
                      .+++|.|++||.++.... ..+|+.....+++|+.+++++      ++++++|++|+|+|+++..++..+.++++.+++.
T Consensus        10 ~g~~P~v~eAl~~~~~~~-~~~y~~~~~~~~lr~~ia~~~------g~~~~~v~~tsggtean~~a~~~~~~~~~~~~~~   82 (340)
T d1svva_          10 VGMHPKILDLMARDNMTQ-HAGYGQDSHCAKAARLIGELL------ERPDADVHFISGGTQTNLIACSLALRPWEAVIAT   82 (340)
T ss_dssp             SCCCHHHHHHHHHHTTCC-CCSTTCSHHHHHHHHHHHHHH------TCTTSEEEEESCHHHHHHHHHHHHCCTTEEEEEE
T ss_pred             CCCCHHHHHHHHHHhhcC-CCCCCCCHHHHHHHHHHHHHh------CCCcceEEEcCCHHHHHHHHHHHHhhhccccccc
Confidence            567899999999876543 346766666788999999999      4577899999999999999999999999999998


Q ss_pred             CCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhc------cCceEEEEeCCCCCccccCCHHHHHHHHHHH
Q 038416          104 RPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALAD------ENTVAIVIINPGNPCGNVFSYQHLQKIARTA  177 (387)
Q Consensus       104 ~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~  177 (387)
                      .+.|..+.........+........  ... ..+.+...++..      ..+..++++...|.+|...+.+++..+.+.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (340)
T d1svva_          83 QLGHISTHETGAIEATGHKVVTAPC--PDG-KLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASC  159 (340)
T ss_dssp             TTSHHHHSSTTHHHHTTCCEEEECC--TTS-CCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHH
T ss_pred             cccceeeeecccccccceeeeeccc--ccc-cccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhccc
Confidence            8888665433330022222222221  222 223333232221      1233445555555577777889999999999


Q ss_pred             HhcCcEEeecccccccccCCCCC-ccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhh--
Q 038416          178 RNLGIIVIADEVYNHLAFGSTPY-VPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL--  254 (387)
Q Consensus       178 ~~~~~~li~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~--  254 (387)
                      .+++.++++|+++.......... ......... ..+...+..|.  ..+...++.....        ..........  
T Consensus       160 ~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~--------~~~~~~~~~~~~  228 (340)
T d1svva_         160 KEHGLYLFLDGARLASALSSPVNDLTLADIARL-TDMFYIGATKA--GGMFGEALIILND--------ALKPNARHLIKQ  228 (340)
T ss_dssp             HHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHH-CSEEEEECTTT--TCSSCEEEEECSG--------GGCTTHHHHHHH
T ss_pred             ccccceeeeeccceeeeeccccccccccccccc-ceeeecCCccc--cccccccccccch--------hhhhhhhhhccc
Confidence            99999999999998544332211 111111111 12333344444  3333445554432        1222222221  


Q ss_pred             h-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHH
Q 038416          255 N-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLE  333 (387)
Q Consensus       255 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  333 (387)
                      . ..........+++...+..   .......++...++..+...++.+ ++.+. .|..++++++.++.          +
T Consensus       229 ~~~~~~~~~~~~aa~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~-~p~~~~~v~~~~~~----------~  293 (340)
T d1svva_         229 RGALMAKGWLLGIQFEVLMKD---NLFFELGAHSNKMAAILKAGLEAC-GIRLA-WPSASNQLFPILEN----------T  293 (340)
T ss_dssp             TTCCCTTTHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHHHHT-TCCBS-SCCSSSEECBEEEH----------H
T ss_pred             ccCccchhhHHHHHHHHHhhh---hHHHHHHHHHHHHHhhhHHHHhcC-CCeee-cCCCceEEEEeCCH----------H
Confidence            1 1122222233333333332   334455666777778888888887 78844 67777888776642          3


Q ss_pred             HHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHH
Q 038416          334 FCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKA  378 (387)
Q Consensus       334 ~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~  378 (387)
                      ....++++..+...+. ....++++|++++  ++++|++++++.|++
T Consensus       294 ~~~~l~~~~~~~~~~~-~~~~~~~vR~s~~~~~t~edid~~l~~l~~  339 (340)
T d1svva_         294 MIAELNNDFDMYTVEP-LKDGTCIMRLCTSWATEEKECHRFVEVLKR  339 (340)
T ss_dssp             HHHHHTTTEECEEEEE-ETTTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhcccc-cCCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4455544422222221 1123678999884  689999999999876

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.87  E-value=9.3e-21  Score=174.53  Aligned_cols=325  Identities=12%  Similarity=0.015  Sum_probs=203.0

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCC-------CCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh----
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYS-------PTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL----   93 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~-------~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l----   93 (387)
                      +.|..+.+++.+.+.+...+...       ...-.+++|+.+++++      ++++++|++|+++|++++.++...    
T Consensus        38 ~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~ll------ga~~~ei~~~~~~T~~~~~~~~~~~~~~  111 (404)
T d1qz9a_          38 ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLI------GARDGEVVVTDTTSINLFKVLSAALRVQ  111 (404)
T ss_dssp             CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTT------TCCTTSEEECSCHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHh------CCCCCcEEEecCchHHHHHHhhhhhhhh
Confidence            57889999999988653221110       0112346788888888      578999999999999998877543    


Q ss_pred             --cCCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHH
Q 038416           94 --ARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQ  171 (387)
Q Consensus        94 --~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~  171 (387)
                        ..+++.|++.+..|++......  ..+.++..++...  ....+++.++++++++|++|.+++.+|.||..+|   ++
T Consensus       112 ~~~~~~~~vi~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~T~lV~i~~v~~~tG~~~p---v~  184 (404)
T d1qz9a_         112 ATRSPERRVIVTETSNFPTDLYIA--EGLADMLQQGYTL--RLVDSPEELPQAIDQDTAVVMLTHVNYKTGYMHD---MQ  184 (404)
T ss_dssp             HHHSTTCCEEEEETTSCHHHHHHH--HHHHHHHCSSCEE--EEESSGGGHHHHCSTTEEEEEEESBCTTTCBBCC---HH
T ss_pred             cccCCCcEEEEeccccchHHHHHH--hhhheeeeeceec--cccccchhHHHhcCCCceEEEEecccccccceec---HH
Confidence              3578888888878776554444  4444444443321  2346788999999999999999999999999998   88


Q ss_pred             HHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHH-
Q 038416          172 KIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSI-  250 (387)
Q Consensus       172 ~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~-  250 (387)
                      +|+++|+++|+.+++|.+++.    |.....+.....+   +++.|.+|++..+..-+|+++.++...-...+...... 
T Consensus       185 ~i~~~~~~~~~~~~vD~~q~~----g~~~~~~~~~~~d---~~~~s~~K~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~  257 (404)
T d1qz9a_         185 ALTALSHECGALAIWDLAHSA----GAVPVDLHQAGAD---YAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFG  257 (404)
T ss_dssp             HHHHHHHHHTCEEEEECTTTT----TTSCCCHHHHTCS---EEEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGG
T ss_pred             HHhccccccccceeEEeeccc----cccccccccccce---EEEEechhhcccCCceEEEEEechhhhhhCCccccccCC
Confidence            889999999999999999986    3233334444443   78889999864433335777765421000000000000 


Q ss_pred             -H--------------hhhhccCCcchHHHHHHHHHhh---hccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCc
Q 038416          251 -K--------------GCLNAASHPVTFIQAAVPRIVD---ETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQG  312 (387)
Q Consensus       251 -~--------------~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  312 (387)
                       .              .......+++......+...+.   ........+....+......+...+...+++.++.....
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~i~~p~~~  337 (404)
T d1qz9a_         258 HSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREH  337 (404)
T ss_dssp             BCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSG
T ss_pred             ccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHhhccCCCEEEECCCCc
Confidence             0              0000112233333333333333   222344455555555555555555555567775422211


Q ss_pred             ---eEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee---CChHhHHHHHHHHHHHHHH
Q 038416          313 ---AMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA---AEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       313 ---g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~---~~~e~~~~~~~~l~~~~~~  382 (387)
                         +..+.+.++        +..++...| .++||.+..    ..++.+|||++   ++++|++++++.|++++++
T Consensus       338 ~~r~~~vsf~~~--------~~~~v~~~L-~~~gi~~~~----r~~~~lRiS~~h~ynt~~did~~~~~L~~vl~~  400 (404)
T d1qz9a_         338 AKRGSHVSFEHP--------EGYAVIQAL-IDRGVIGDY----REPRIMRFGFTPLYTTFTEVWDAVQILGEILDR  400 (404)
T ss_dssp             GGBCSEEEEECT--------THHHHHHHH-HTTTEECEE----ETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cceeeEEEEecC--------CHHHHHHHH-HHCCCEEee----cCCCeEEEECCCCCCCHHHHHHHHHHHHHHHHh
Confidence               234444444        345566655 677986531    12478999984   5789999999999999876

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.86  E-value=3.1e-19  Score=160.48  Aligned_cols=290  Identities=16%  Similarity=0.147  Sum_probs=202.6

Q ss_pred             CCCC--CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhh--ccCCC
Q 038416           45 CYSP--TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAA--GSNNN  120 (387)
Q Consensus        45 ~y~~--~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~--~~~~g  120 (387)
                      .|+.  .+....|++.++++.        ..+..+++++|+.|+..++.+++++||+|++.+..|.+....+.  ....|
T Consensus        52 ~YsR~~nPT~~~le~~la~LE--------g~~~a~~~sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g  123 (394)
T d1e5ea_          52 IYTRLGNPTVSNLEGKIAFLE--------KTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFG  123 (394)
T ss_dssp             CBTTTCCHHHHHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTT
T ss_pred             eecCCCCHHHHHHHHHHHHHh--------CCcceeeeccchHHHHHHHHhhcccccccccccceeehhhHhHHHHhhccc
Confidence            4554  345677888888876        45678889999999999999999999999999999987654443  22678


Q ss_pred             ceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHH-hcCcEEeecccccccccCCCC
Q 038416          121 LEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTAR-NLGIIVIADEVYNHLAFGSTP  199 (387)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~-~~~~~li~D~~~~~~~~~~~~  199 (387)
                      +++..++.       .|++++++++++++++|++..|.||+..+.+   ++++++.++ ++|+++|+|..++.-.    -
T Consensus       124 i~~~~~d~-------~d~~~~~~~i~~~t~lv~~Etp~NP~l~v~D---i~~~~~~~~~~~g~~vvvDnT~atP~----~  189 (394)
T d1e5ea_         124 IQVDFINT-------AIPGEVKKHMKPNTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPM----I  189 (394)
T ss_dssp             CEEEEECT-------TSTTHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTT----T
T ss_pred             eeeeccCC-------CCHHHHHHhhcccccEEEEeccCCcceeeeh---hhhhhhccccccCeEEEecCcccCcc----c
Confidence            88887753       2678899999999999999999999999977   667776555 5689999999987422    1


Q ss_pred             CccccccCCCccEEEEecCcccccccc-cceEEEEeeCCCCcccchhHHHHHHhh--hh-ccCCcchHHHHHHHHHhhhc
Q 038416          200 YVPMGVFGSIVPVITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGFVDSIKGC--LN-AASHPVTFIQAAVPRIVDET  275 (387)
Q Consensus       200 ~~~~~~~~~~~~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~l~~~  275 (387)
                      ..|+ .+..+   +++.|.+|.++..+ .-.|.+++++        +.+.+.+..  +. .+..++++..+.+..-|+. 
T Consensus       190 ~~Pl-~~GaD---iVvhS~TKy~~GhsDv~~G~v~~~~--------~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~T-  256 (394)
T d1e5ea_         190 TNPV-DFGVD---VVVHSATKYINGHTDVVAGLICGKA--------DLLQQIRMVGIKDITGSVISPHDAWLITRGLST-  256 (394)
T ss_dssp             CCGG-GGTCS---EEEEETTTTTTCSSCCCCEEEEECH--------HHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTT-
T ss_pred             CCch-hcCCC---EEEechhhhcCCCcccccccccchh--------hHHHHHHHHHHHHhhCCCCChHHHHHHHhhchh-
Confidence            1222 23333   99999999986544 5566666654        455544432  22 4567788777777776766 


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----------------ceEEEEEecCcccccCCCcHHHHHHHHH
Q 038416          276 NEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ----------------GAMFVMVKLNVSMLEDIGDDLEFCLKLA  339 (387)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll  339 (387)
                          +.-+.++..+++..+.+.|++.|.++.+.+|.                .|..+.+.+.        ...+.+.+++
T Consensus       257 ----L~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~--------~~~~~a~~f~  324 (394)
T d1e5ea_         257 ----LNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILK--------SGFEGAKKLL  324 (394)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEET--------THHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHHHHhhcCCccEEeCCCcccccchhhhhcccccCCCeeeeecc--------CCHHHHHHHH
Confidence                78889999999999999999987765555541                2333343433        2233344444


Q ss_pred             HhcCeEEEcCCccCC---------------------------CCeEEEEeeCChHhHHHHHHHHHHHHHHhh
Q 038416          340 KEESVIILPGRTVGM---------------------------KNWLRIAFAAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       340 ~~~gi~v~~g~~~~~---------------------------~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      ++-.+... +..++.                           ++.||+|++.  |+.+.+++.|.++++.+.
T Consensus       325 ~~l~l~~~-a~SlGg~eSLi~~p~~~th~~~~~~~r~~~Gi~~~liRlSVGl--Ed~eDLi~Dl~qAl~~l~  393 (394)
T d1e5ea_         325 DNLKLITL-AVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI--EDADELIADFKQGLDALL  393 (394)
T ss_dssp             HTCSSSEE-SSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHHHHHH
T ss_pred             HhCCccce-eeccCCccceeECccccccccCCHHHHHhcCCCcCEEEEEecc--CCHHHHHHHHHHHHHHhh
Confidence            44443221 111111                           3579999998  777788888888887764

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.86  E-value=1.7e-19  Score=158.96  Aligned_cols=280  Identities=16%  Similarity=0.137  Sum_probs=196.0

Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhh--ccCCCceeeeeccCCC
Q 038416           54 SARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAA--GSNNNLEARHYDLLPE  131 (387)
Q Consensus        54 ~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~--~~~~g~~~~~~~~~~~  131 (387)
                      .|++.+|++.        ..+..+++++|+.|+..++.+++++||+|+++.+.|.+....+.  ....|+++..++.   
T Consensus         2 aLE~~la~Le--------g~~~a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~---   70 (331)
T d1pffa_           2 ALEGKIAKLE--------HAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM---   70 (331)
T ss_dssp             HHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT---
T ss_pred             HHHHHHHHHh--------CCCeEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEecc---
Confidence            5888999887        45678899999999999999999999999999999987655543  2268888887753   


Q ss_pred             CCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHH-HHhcCcEEeecccccccccCCCCCccccccCCCc
Q 038416          132 KRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIART-ARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIV  210 (387)
Q Consensus       132 ~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~-~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~  210 (387)
                          .|++.+++++++++++|++..|.||+..+.+   +++++++ ++++|+++|+|..++....-    .++ .+..| 
T Consensus        71 ----~d~~~~~~~i~~~t~~i~~Es~~np~~~v~d---~~~~~~~~a~~~~~~~vVDnT~atp~~~----~pl-~~GaD-  137 (331)
T d1pffa_          71 ----AVPGNIEKHLKPNTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILT----NPL-DLGVD-  137 (331)
T ss_dssp             ----TSTTHHHHTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHC----CGG-GGTCS-
T ss_pred             ----cchhhHhhhcccccceeeeeccccccccccc---chhhhhhhhcccCceEEeeccccccccc----ccc-ccCCC-
Confidence                2789999999999999999999999999977   6666665 46789999999999853311    122 22233 


Q ss_pred             cEEEEecCcccccccc-cceEEEEeeCCCCcccchhHHHHHHhh--hh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHH
Q 038416          211 PVITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGFVDSIKGC--LN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGL  286 (387)
Q Consensus       211 ~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  286 (387)
                        +++.|.+|.++..+ .=.|+++.++        +...+.+..  .. .+..+++...+.+..-++.     +.-+.++
T Consensus       138 --iVv~S~TKy~~Gh~d~~~G~v~~~~--------~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T-----l~~Rm~~  202 (331)
T d1pffa_         138 --IVVHSATKYINGHTDVVAGLVCSRA--------DIIAKVKSQGIKDITGAIISPHDAWLITRGTLT-----LDMRVKR  202 (331)
T ss_dssp             --EEEEETTTTTSSSSSCCCEEEEECH--------HHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH-----HHHHHHH
T ss_pred             --EEEecchhhcCCCCccccccccccc--------cchhhhhhhhhhhccCCCCCHHHHHHHHHHHHH-----HHHHHHH
Confidence              89999999986544 4456666543        344333322  22 3566777777766666654     7888999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCC----------------ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEE---E
Q 038416          287 LKETADICYERIKEIPCITCPVKPQ----------------GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVII---L  347 (387)
Q Consensus       287 ~~~~~~~~~~~l~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v---~  347 (387)
                      ..+++..+.+.|++.|.+..+.+|.                .|..+.+.+..         .+.+.+++.+-.+.-   .
T Consensus       203 ~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~---------~~~~~~f~d~l~lf~~~~S  273 (331)
T d1pffa_         203 AAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG---------LEKAKKVLDNCHVVSLAVS  273 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS---------HHHHHHHHHTCSSSEECSS
T ss_pred             HHHHHHHHHHhhhhCCcEEeeccccccCccHHHHHhhcccccCcccceeecc---------HHHHHHHHHhCCcceeccc
Confidence            9999999999999988876666653                24444555531         122333434333221   1


Q ss_pred             cCCccC-----------------------CCCeEEEEeeCChHhHHHHHHHHHHHHHHh
Q 038416          348 PGRTVG-----------------------MKNWLRIAFAAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       348 ~g~~~~-----------------------~~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      -|+...                       .++.+|+|++.  |+.+.+++.|.++++..
T Consensus       274 lG~~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlsvGl--E~~~DLi~Dl~~AL~~i  330 (331)
T d1pffa_         274 LGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGC--ENVQDIIDDLKQALDLV  330 (331)
T ss_dssp             CCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHHHTC
T ss_pred             CCCCceeEeCccccccccCCHHHHHhcCCCcCeEEEEeee--CCHHHHHHHHHHHHHHh
Confidence            121110                       03579999998  77777778888887653

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.86  E-value=1.8e-19  Score=164.27  Aligned_cols=318  Identities=11%  Similarity=0.109  Sum_probs=207.6

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCC--CCCcHHHHHHHHHHHhhcCCCCC-CCCCEEEcCChHHHHHHHHHhhcCCCCeEE
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSP--TLGVPSARRGIADYLNRDLPYKL-SPEDVYLTLGCSQAIEISLSVLARPGANIL  101 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~--~~~~~~lr~~ia~~~~~~~~~~~-~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl  101 (387)
                      +.|+.|++||...    ..++++.  ..-..+.|+.++++++      + +...|++++|+|.++++++..+..+|++++
T Consensus        28 ~v~~~Vl~am~~~----~~~hr~~ef~~i~~~~r~~l~~ll~------~~~~~~i~~~g~gT~~~~~~~~~~~~~~~~~~   97 (377)
T d1vjoa_          28 NAHPSVLQAMNVS----PVGHLDPAFLALMDEIQSLLRYVWQ------TENPLTIAVSGTGTAAMEATIANAVEPGDVVL   97 (377)
T ss_dssp             CCCHHHHHHHSSC----CCCTTSHHHHHHHHHHHHHHHHHHT------CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEE
T ss_pred             CCCHHHHHHhCcC----CCCCCCHHHHHHHHHHHHHHHHHhC------CCCCeEEEEcCcHHHHHHHHHHhccccccccc
Confidence            6888888876432    2344443  1235566677777763      3 335777888899999999999999999998


Q ss_pred             EcCCCCcch--HHHhhccCCCceeeeeccCCCCCccCChhhHHH-hhccCceEEEEeCCCCCccccCCHHHHHHHHHHHH
Q 038416          102 IPRPGYPLY--EIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEA-LADENTVAIVIINPGNPCGNVFSYQHLQKIARTAR  178 (387)
Q Consensus       102 ~~~p~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~  178 (387)
                      +....++..  .....  ..+.....+....  +...+.+..+. ..+++++.+.+++.+|.||+..+   ++++.++|+
T Consensus        98 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~---i~~i~~~~~  170 (377)
T d1vjoa_          98 IGVAGYFGNRLVDMAG--RYGADVRTISKPW--GEVFSLEELRTALETHRPAILALVHAETSTGARQP---LEGVGELCR  170 (377)
T ss_dssp             EEESSHHHHHHHHHHH--HTTCEEEEEECCT--TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHH
T ss_pred             eeeechhhhhhhhhhh--hhcccccccccCC--CCcccchhhhhhhhcCcceeeeeeeeeccceeeec---hhhhhhhhh
Confidence            887777643  23333  4555555554432  22344444444 44668899999999999999988   888899999


Q ss_pred             hcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhh-----
Q 038416          179 NLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGC-----  253 (387)
Q Consensus       179 ~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~-----  253 (387)
                      ++|.++++|.+++.    |....++..++.+   +++.|.+|+++.++ .+|+++.++        ..++.....     
T Consensus       171 ~~g~~~~vDa~~~~----g~~~~~~~~~~~d---~~~~s~~K~~~gp~-g~~~~~~~~--------~~~~~~~~~~~~~~  234 (377)
T d1vjoa_         171 EFGTLLLVDTVTSL----GGVPIFLDAWGVD---LAYSCSQKGLGCSP-GASPFTMSS--------RAIEKLQRRRTKVA  234 (377)
T ss_dssp             HHTCEEEEECTTTT----TTSCCCTTTTTCS---EEECCSSSTTCSCS-SCEEEEECH--------HHHHHHHTCSSCCS
T ss_pred             hccceEEEecchhh----hhhhhcccccccc---eeeecccccccCCC-EEEEecchh--------hHHhhhhccCCCCc
Confidence            99999999999984    2223334444433   78889999864332 356666543        233322211     


Q ss_pred             ----------------hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCc--eEE
Q 038416          254 ----------------LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQG--AMF  315 (387)
Q Consensus       254 ----------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--g~~  315 (387)
                                      .....++.......+..+.....+.......++.+++...+.+.+... ++..+..+..  ...
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~rs~~v  313 (377)
T d1vjoa_         235 NWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI-GLSLHVEKEYRLPTL  313 (377)
T ss_dssp             CSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSE
T ss_pred             ceeeccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhcc-CceeecChHhcCCeE
Confidence                            112223333344444444443344556777778888888888888776 4443323321  223


Q ss_pred             EEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe-e--CChHhHHHHHHHHHHHHH
Q 038416          316 VMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF-A--AEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~-~--~~~e~~~~~~~~l~~~~~  381 (387)
                      +.+.++..     .+..+++..|++++||.+..|.....++.|||++ +  .++|+++++++.|+++++
T Consensus       314 ~~~~~p~~-----~~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~  377 (377)
T d1vjoa_         314 TTVCIPDG-----VDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR  377 (377)
T ss_dssp             EEEECCTT-----CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred             EEEECCCC-----CCHHHHHHHHHhcCCEEEecCcccccCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence            33445431     2567888888888999999887766678999995 4  468999999999998874

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.86  E-value=1.1e-19  Score=166.47  Aligned_cols=320  Identities=13%  Similarity=0.080  Sum_probs=206.2

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCC--CCCcHHHHHHHHHHHhhcCCCCCCCC-CEEEcCChHHHHHHHHHhhcCCCCeEE
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSP--TLGVPSARRGIADYLNRDLPYKLSPE-DVYLTLGCSQAIEISLSVLARPGANIL  101 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~--~~~~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~g~~vl  101 (387)
                      ..++.|++||..    ...++++.  .....++|+.++++++      ++.. .|+++.|+|.++++++.++..+|++++
T Consensus        27 ~~~~~V~~Am~~----~~~~hr~~ef~~i~~~~r~~L~~ll~------~~~~~~i~~~gsgT~a~ea~~~~l~~~~~~vl   96 (388)
T d2ch1a1          27 NCSKRVLTAMTN----TVLSNFHAELFRTMDEVKDGLRYIFQ------TENRATMCVSGSAHAGMEAMLSNLLEEGDRVL   96 (388)
T ss_dssp             CCCHHHHHHTTS----CCCCTTCHHHHHHHHHHHHHHHHHHT------CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEE
T ss_pred             CCCHHHHHHhCc----CCCCCCCHHHHHHHHHHHHHHHHHhC------CCCCeEEEEcCcHHHHHHHHHHHhcccccccc
Confidence            568888887633    22345543  1234566666666663      3434 566788899999999999999999999


Q ss_pred             EcCCCCcchH--HHhhccCCCceeeeeccCCCCCccCChhhHHHhh-ccCceEEEEeCCCCCccccCCHHHHHHHHHHHH
Q 038416          102 IPRPGYPLYE--IHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALA-DENTVAIVIINPGNPCGNVFSYQHLQKIARTAR  178 (387)
Q Consensus       102 ~~~p~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~  178 (387)
                      +...++++..  ....  ..+.....+...+  +...+.+.++++. +.+++++.+++.+|.||...+   ++++.++|+
T Consensus        97 ~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~---~~~i~~~~~  169 (388)
T d2ch1a1          97 IAVNGIWAERAVEMSE--RYGADVRTIEGPP--DRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQP---LEGVGQICH  169 (388)
T ss_dssp             EEESSHHHHHHHHHHH--HTTCEEEEEECCT--TSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHH
T ss_pred             ccccccccccchhhhh--hhccccccccccc--ccccchhhhhhhhccCCcceeeeeecccccccccc---hhhhcchhc
Confidence            8887776543  3444  5677776666543  3345666666654 457899999999999999988   677888888


Q ss_pred             hcCcEEeecccccccccCCCCCccccccCCCccEEEEecCccccc-ccccceEEEEeeCCCCcccchhHHHHHHhh----
Q 038416          179 NLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWI-VPGWRLGWLVTSDPNGILQNSGFVDSIKGC----  253 (387)
Q Consensus       179 ~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~-~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~----  253 (387)
                      ++|+++++|.+++...    .+..+..+..   .+++.|-+|+++ .+|  +|+++.++        ..++.....    
T Consensus       170 ~~~~~~~vD~~ss~g~----~pid~~~~~~---d~~~~s~~K~~~gp~G--~g~~~~~~--------~~~~~~~~~~~~~  232 (388)
T d2ch1a1         170 QHDCLLIVDAVASLCG----VPFYMDKWEI---DAVYTGAQKVLGAPPG--ITPISISP--------KALDVIRNRRTKS  232 (388)
T ss_dssp             HTTCEEEEECTTTBTT----BCCCTTTTTC---CEEECCCC-CCCCCSS--CEEEEECH--------HHHHHHHTCSSCC
T ss_pred             cccceeeeeeeecccc----cccchhccCc---eEEEEccccccCCCCe--EEEEeccH--------HHHHhhhcccCcc
Confidence            9999999999999632    2333333433   388889999864 444  67776653        223222210    


Q ss_pred             --------------------hhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC--
Q 038416          254 --------------------LNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ--  311 (387)
Q Consensus       254 --------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--  311 (387)
                                          ..+..+++.....++...+....+.......++...........+........+..+.  
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  312 (388)
T d2ch1a1         233 KVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHR  312 (388)
T ss_dssp             SCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGB
T ss_pred             ccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhcccccccCCHHHh
Confidence                                0123345555555555555543333444444455554545555555432111111221  


Q ss_pred             ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEE-ee--CChHhHHHHHHHHHHHHHHh
Q 038416          312 GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIA-FA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       312 ~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~-~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                      ....+.+.++..     .+..++...+++++||.+.+|.....++.|||+ ++  .++|+++.+++.|+++|+..
T Consensus       313 s~~v~~~~~p~g-----~~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~~  382 (388)
T d2ch1a1         313 LPTVTGIMIPKG-----VDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKAT  382 (388)
T ss_dssp             CTTEEEEECCTT-----CCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCC-----CCHHHHHHHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHhh
Confidence            122445566542     256678888878889999998876667899999 44  36899999999999999874

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=8.9e-19  Score=157.19  Aligned_cols=289  Identities=18%  Similarity=0.157  Sum_probs=193.7

Q ss_pred             CCCC--CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhh--ccCCC
Q 038416           45 CYSP--TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAA--GSNNN  120 (387)
Q Consensus        45 ~y~~--~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~--~~~~g  120 (387)
                      .|+.  .+....|++.++++.        ..+..+++++|+.|+..++ .++++||+|++....|++....+.  ....|
T Consensus        48 ~YsR~gnPT~~~lE~~la~LE--------~~~~a~~~sSGmaAi~~~l-~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~g  118 (393)
T d1n8pa_          48 EYSRSQNPNRENLERAVAALE--------NAQYGLAFSSGSATTATIL-QSLPQGSHAVSIGDVYGGTHRYFTKVANAHG  118 (393)
T ss_dssp             CBTTTCCHHHHHHHHHHHHHT--------TCSEEEEESCHHHHHHHHH-HTSCSSCEEEEESSCCHHHHHHHHHTSTTTC
T ss_pred             eeeCCCChHHHHHHHHHHHHh--------CCceEEEecCchhHHHhhh-hcccCCCeeeeeeeecccchhhhhhhhhccc
Confidence            4554  335567777777765        3467788888899997665 566889999999999998766555  22556


Q ss_pred             ceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHH----hcCcEEeecccccccccC
Q 038416          121 LEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTAR----NLGIIVIADEVYNHLAFG  196 (387)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~----~~~~~li~D~~~~~~~~~  196 (387)
                      .++..++        .+.+++++++++++++|++..|.||+..+.+   +++++++|+    ++|+++|+|..++.... 
T Consensus       119 i~~~~~~--------~~~~~~~~~i~~~t~lv~~EspsNP~l~v~D---i~~ia~~a~~~~~~~g~~lvVDnT~atP~~-  186 (393)
T d1n8pa_         119 VETSFTN--------DLLNDLPQLIKENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYI-  186 (393)
T ss_dssp             SCCEEES--------SHHHHHHHHSCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHH-
T ss_pred             ceeEEee--------cchHHHHHHhhhhcceeEecCcchhhhhccc---hhhhhhhhhhhcccCCceEEEecCccCccc-
Confidence            6655542        2457899999999999999999999999988   666666666    78999999999975321 


Q ss_pred             CCCCccccccCCCccEEEEecCcccccccc-cceEEEEeeCCCCcccchhHHHHHHhhhh-ccCCcchHHHHHHHHHhhh
Q 038416          197 STPYVPMGVFGSIVPVITLGSISKRWIVPG-WRLGWLVTSDPNGILQNSGFVDSIKGCLN-AASHPVTFIQAAVPRIVDE  274 (387)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~  274 (387)
                         ..|+ .+..+   +++.|.+|.++..+ .=.|.++..+       .++.++++..+. .+..+++...+.+..-++.
T Consensus       187 ---~~Pl-~~GAD---iVvhS~TKyi~GhsDv~~G~v~~~~-------~~~~~~l~~~~~~~G~~~~p~~a~ll~rgl~T  252 (393)
T d1n8pa_         187 ---SNPL-NFGAD---IVVHSATKYINGHSDVVLGVLATNN-------KPLYERLQFLQNAIGAIPSPFDAWLTHRGLKT  252 (393)
T ss_dssp             ---CCGG-GGTCS---EEEEETTTTTTCSSCCCCEEEEESC-------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT
T ss_pred             ---CCch-hhCCC---EEEEccccccCCCCccccceeeecc-------hhHHHHHHHHHhhcCCCCChHHHHHHHhCCcc
Confidence               1122 23333   99999999986544 5566666543       246667766543 5667788877777777766


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCC------------------CceEEEEEecCcccccCCCcHHHHH
Q 038416          275 TNEAFFAKIIGLLKETADICYERIKEI-PCITCPVKP------------------QGAMFVMVKLNVSMLEDIGDDLEFC  335 (387)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~------------------~~g~~~~~~~~~~~~~~~~~~~~~~  335 (387)
                           +.-+.++..+++..+.+.|+.. |.+..+.+|                  .+|.++.+.+..        ..+.+
T Consensus       253 -----l~lR~~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~--------~~~~~  319 (393)
T d1n8pa_         253 -----LHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKG--------GAEAA  319 (393)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESS--------CHHHH
T ss_pred             -----hhhHHHHHHHHHHHHHHHHHhccCcEEEEecccccccccchhhhhccccCCCCceEEEEEeC--------CHHHH
Confidence                 7778888999999999999753 434433333                  124455555542        12222


Q ss_pred             HHHHHhcCeEE---EcCCccC----------------------C-CCeEEEEeeCChHhHHHHHHHHHHHHHHh
Q 038416          336 LKLAKEESVII---LPGRTVG----------------------M-KNWLRIAFAAEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       336 ~~ll~~~gi~v---~~g~~~~----------------------~-~~~~Ri~~~~~~e~~~~~~~~l~~~~~~~  383 (387)
                      ..+..+-.+..   .-|+...                      . ++.||||++.  |+.+.+++.|.+++++.
T Consensus       320 ~~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~~~r~~~gi~~~liRlSvGl--E~~~DLi~Dl~~AL~~a  391 (393)
T d1n8pa_         320 SKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGI--EDTDDLLEDIKQALKQA  391 (393)
T ss_dssp             HHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCS--SCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCcceecccCCCcCceEeCchhhccccCCHHHHHhcCCCcCEEEEEecc--CCHHHHHHHHHHHHHHh
Confidence            23333322211   1111100                      0 3579999998  78888888888888764

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.83  E-value=1.4e-18  Score=158.21  Aligned_cols=310  Identities=12%  Similarity=0.072  Sum_probs=202.4

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh-cCCCCeEEEcC
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL-ARPGANILIPR  104 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~g~~vl~~~  104 (387)
                      .+++-++++.++++.+.+   .......++++.+++++        +.+.++++++||.|+.+++.++ +++||.|+++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~---~~G~~v~~~E~~la~~~--------g~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~   78 (376)
T d1mdoa_          10 MGAEELAAVKTVLDSGWI---TTGPKNQELEAAFCRLT--------GNQYAVAVSSATAGMHIALMALGIGEGDEVITPS   78 (376)
T ss_dssp             CCHHHHHHHHHHHHHTCC---SSSHHHHHHHHHHHHHH--------CCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEES
T ss_pred             CCHHHHHHHHHHHhcCCC---cCCHHHHHHHHHHHHHH--------CcCeEEEeCCHHHHHHHHHHHhCCCCCCEEEEec
Confidence            456667888888886533   22235689999999999        3467888999999999999998 79999999999


Q ss_pred             CCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEE
Q 038416          105 PGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIV  184 (387)
Q Consensus       105 p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~l  184 (387)
                      .+|.+....+.  ..|.+++.++++++ .+.+|++.|+++++++|++|++++   ..|...+   +.+|.++|+++|++|
T Consensus        79 ~~~~~~~~ai~--~~g~~pv~~d~~~~-~~~~d~~~l~~~i~~~tkaIi~~h---~~G~~~~---~~~i~~i~~~~~i~v  149 (376)
T d1mdoa_          79 MTWVSTLNMIV--LLGANPVMVDVDRD-TLMVTPEHIEAAITPQTKAIIPVH---YAGAPAD---LDAIYALGERYGIPV  149 (376)
T ss_dssp             SSCHHHHHHHH--HTTCEEEEECBCTT-TCCBCHHHHHHHCCTTEEEECCBC---GGGCCCC---HHHHHHHHHHHTCCB
T ss_pred             ccccccccchh--ccccceeeeccccc-ccCCCHHHHHHhcCCCCeEEEEeC---CCCCccc---hhHHHHHHHhcCceE
Confidence            99999999999  99999999998754 567999999999999999998765   5787755   788888999999999


Q ss_pred             eecccccccc-cCCCCCccccccCCCccEEEEecC--cccccccccceEEEEeeCCCCcccchhHHHHHHhhhhcc----
Q 038416          185 IADEVYNHLA-FGSTPYVPMGVFGSIVPVITLGSI--SKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAA----  257 (387)
Q Consensus       185 i~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~s~--sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~----  257 (387)
                      |+|++++... +.+.   .....   +  +.+.||  +|.++  ....|.+++++       .++.++++.....+    
T Consensus       150 IeD~a~a~g~~~~~~---~~g~~---g--~~~~Sf~~~K~l~--~g~GG~i~t~~-------~~l~~~~~~~~~~g~~~~  212 (376)
T d1mdoa_         150 IEDAAHATGTSYKGR---HIGAR---G--TAIFSFHAIKNIT--CAEGGIVVTDN-------PQFADKLRSLKFHGLGVD  212 (376)
T ss_dssp             CEECTTCTTCEETTE---ETTSS---S--EEEEECCTTSSSC--SSSCEEEEESC-------HHHHHHHHHHTBTTEECC
T ss_pred             EeccchhccCeeCCe---ecccc---c--CccccCCCcCCCC--CCCCCEEEEec-------hhHHHHHHhhcccCCccc
Confidence            9999998533 2221   11111   1  233455  57643  33457777765       34555555443211    


Q ss_pred             ---------------------CCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCc---e
Q 038416          258 ---------------------SHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQG---A  313 (387)
Q Consensus       258 ---------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---g  313 (387)
                                           ...+....+....-|     ..+++..++.+++++.+.+.|++++..........   .
T Consensus       213 ~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL-----~~~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~  287 (376)
T d1mdoa_         213 AWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQL-----QKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHA  287 (376)
T ss_dssp             -----------CCEESSCCCBCCCCHHHHHHHHHHH-----HTHHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECC
T ss_pred             ccccccccccccccchhcccccccchhhhhhhhhhh-----hhhhHHHHHHhhhhhhhhhhccccccccccccccccccc
Confidence                                 111222222222222     23566677777888888888888755442212111   1


Q ss_pred             EEEE-EecCcccccCCCcHHHHHHHHHHhcCeEEEcCCcc-----------CC----------CCeEEEEe--eCChHhH
Q 038416          314 MFVM-VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTV-----------GM----------KNWLRIAF--AAEPATL  369 (387)
Q Consensus       314 ~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~-----------~~----------~~~~Ri~~--~~~~e~~  369 (387)
                      ++.+ +.++.... + .+-.++...| ++.||.+.+....           ..          .+.+.+-+  ..+++++
T Consensus       288 ~~~~~~~~~~~~~-~-~~Rd~l~~~L-~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei  364 (376)
T d1mdoa_         288 WHLFIIRVDEARC-G-ITRDALMASL-KTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDF  364 (376)
T ss_dssp             CSCEEEECCHHHH-S-SCHHHHHHHH-HHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHH
T ss_pred             ccccccccccccc-h-hhHHHHHHHH-HHCCCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHH
Confidence            1111 22221100 0 0223566555 7779987643210           00          23455544  3478999


Q ss_pred             HHHHHHHHHHH
Q 038416          370 EDGLERIKAFC  380 (387)
Q Consensus       370 ~~~~~~l~~~~  380 (387)
                      +..++.|++++
T Consensus       365 ~~I~~~i~~i~  375 (376)
T d1mdoa_         365 DRVITALHQIA  375 (376)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998864

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=8.6e-19  Score=160.03  Aligned_cols=324  Identities=13%  Similarity=0.069  Sum_probs=204.3

Q ss_pred             CcHHHHHHHHHHhcCCCCC-CCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcC---------
Q 038416           26 DSTVAEDAVVDALRTAHYN-CYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLAR---------   95 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~-~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~---------   95 (387)
                      .+|.+.+|+++++...... ..........+.+.++++.        ..+.+++++++++|++.+++...+         
T Consensus        58 ~~p~i~~Av~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~  129 (404)
T d2byla1          58 CHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF--------NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQ  129 (404)
T ss_dssp             TCHHHHHHHHHHHTTCCCCCTTEEESSHHHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHHHHHhhCCCcccccccchHHHHHHhhhhcc--------cccccccccCccccchhHHHHHHHHhhhccccc
Confidence            6788999999999864221 1112223345555666554        457899999999999999988531         


Q ss_pred             -CCCeEEEcCCCCcchHHHhhccCCCceeee---eccCCCCC--ccCChhhHHHhhccCceEEEEeCC-CCCccc-cCCH
Q 038416           96 -PGANILIPRPGYPLYEIHAAGSNNNLEARH---YDLLPEKR--WEVDLDGVEALADENTVAIVIINP-GNPCGN-VFSY  167 (387)
Q Consensus        96 -~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~---~~~~~~~~--~~~~~~~l~~~~~~~~~~v~l~~p-~nptG~-~~~~  167 (387)
                       ....++....+|++...... +..+-+...   .|..+.-.  ..-|++++++++.+...+.++..| +...|. .+++
T Consensus       130 ~~~~~i~~~~~~~hg~t~~~~-~~~~~~~~~~~~~p~~~~~~~~p~~d~~~l~~~l~~~~iAaviiEPi~g~~G~~~~~~  208 (404)
T d2byla1         130 KYKAKIVFAAGNFWGRTLSAI-SSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDP  208 (404)
T ss_dssp             TTCCEEEEETTCCCCCSHHHH-TTCCCHHHHTTSCSCCTTEEEECTTCHHHHHHHHTSTTEEEEEECSSBTTTTSBCCCT
T ss_pred             cccccccccCCCcccccccee-ccCCCcccccCCCCCCCCeeEecccCHHHHHHhcCCCCeEEEEECCccCCCCCccCCH
Confidence             22467777777775433322 012111110   01100000  012788999988766666666777 555665 4677


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      +.++++.++|++||+++|+||++.+|...|..+.. ..++-...   +.+++|.++..++++|.+++++        ++.
T Consensus       209 ~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~-~~~gv~PD---i~~~gK~l~gG~~p~~av~~~~--------~i~  276 (404)
T d2byla1         209 GYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAV-DYENVRPD---IVLLGKALSGGLYPVSAVLCDD--------DIM  276 (404)
T ss_dssp             THHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGG-GGGTCCCS---EEEECGGGGTTSSCCEEEEECH--------HHH
T ss_pred             HHHHHHHHHHHhcCeEEEeeccccccccccccchh-hhcCCCCC---EEEECchhhCCCccceeeeech--------hhh
Confidence            88999999999999999999999998766653332 22222212   3378899765458999999975        555


Q ss_pred             HHHHhhhh-ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-CCCceEEEEEecCcccc
Q 038416          248 DSIKGCLN-AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPV-KPQGAMFVMVKLNVSML  325 (387)
Q Consensus       248 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~g~~~~~~~~~~~~  325 (387)
                      +.+..... .+++.++++++++.+.|+...++.+   .+...+..+++.+.|+++.. ..+. ....|.+..+.+.....
T Consensus       277 ~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l---~~~~~~~g~~l~~~l~~l~~-~~i~~vRg~Gl~~~i~~~~~~~  352 (404)
T d2byla1         277 LTIKPGEHFSTYGGNPLGCRVAIAALEVLEEENL---AENADKLGIILRNELMKLPS-DVVTAVRGKGLLNAIVIKETKD  352 (404)
T ss_dssp             TTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHTSCT-TTEEEEEEETTEEEEEECCCSS
T ss_pred             hccCCCCCCcCCCcCHHHHHHHHHHHHHHHhcCc---hhhhhHhhHHHHHHHHhhcc-ccceeeeecccEEEEEEecCCc
Confidence            54544332 4577889999998888876444333   34444455566666666521 1111 12335555555543211


Q ss_pred             cCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHH
Q 038416          326 EDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       326 ~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~  382 (387)
                         ....++..++ .++|+.+.+..    .+.+|+++.  ++++++++++++|++++++
T Consensus       353 ---~~~~~~~~~l-~~~Gvl~~~~~----~~~i~l~PpL~it~~~id~~~~~l~~al~~  403 (404)
T d2byla1         353 ---WDAWKVCLRL-RDNGLLAKPTH----GDIIRFAPPLVIKEDELRESIEIINKTILS  403 (404)
T ss_dssp             ---CCHHHHHHHH-HHTTEECEEEE----TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             ---hhHHHHHHHH-HhCCeEEecCC----CCEEEEECCcCCCHHHHHHHHHHHHHHHHc
Confidence               1345666666 56699987632    478999974  6899999999999999875

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=4.4e-18  Score=151.03  Aligned_cols=330  Identities=14%  Similarity=0.050  Sum_probs=221.1

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCC---CCC---cHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCC
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSP---TLG---VPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGA   98 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~---~~~---~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~   98 (387)
                      -+++.+++++...+.+....+|+.   ..|   ..++++...+...+.++  ....+|- ..|++.|+.+++.+|++|||
T Consensus        37 ~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~--a~~anVq-p~SGs~AN~av~~All~pGD  113 (416)
T d1dfoa_          37 YTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFG--ADYANVQ-PHSGSQANFAVYTALLEPGD  113 (416)
T ss_dssp             CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT--CSEEECC-CSSHHHHHHHHHHHHCCTTC
T ss_pred             cCCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhC--CCcceee-cccCccHHHHHHHHhcCCCC
Confidence            478999999999998765544543   122   24454444455554444  2222333 36678899999999999999


Q ss_pred             eEEEcCCCCcchHHHhh---ccCCCceeeeeccCCCCCccCChhhHHHhhc-cCceEEEEeCCCCCccccCCHHHHHHHH
Q 038416           99 NILIPRPGYPLYEIHAA---GSNNNLEARHYDLLPEKRWEVDLDGVEALAD-ENTVAIVIINPGNPCGNVFSYQHLQKIA  174 (387)
Q Consensus        99 ~vl~~~p~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~v~l~~p~nptG~~~~~~~~~~l~  174 (387)
                      +|+.....+.+......   .+....+...++++.  +..+|.+++++.++ .++++|+......|  ..++   ++++.
T Consensus       114 ~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~--~~~IDyd~l~~~a~~~kPklIi~G~S~y~--r~~d---~~~~r  186 (416)
T d1dfoa_         114 TVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDA--TGHIDYADLEKQAKEHKPKMIIGGFSAYS--GVVD---WAKMR  186 (416)
T ss_dssp             EEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCS--SSSBCHHHHHHHHHHHCCSEEEEECSSCC--SCCC---HHHHH
T ss_pred             eeeeccccccccccccccccccCceEEEEecccCC--ccCccHHHHHHHHHHhccceEEecccccc--cccC---HHHHH
Confidence            99998888776543332   011223556666643  34599999999764 47888876654443  2344   78888


Q ss_pred             HHHHhcCcEEeeccccc-ccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhh
Q 038416          175 RTARNLGIIVIADEVYN-HLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGC  253 (387)
Q Consensus       175 ~~~~~~~~~li~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~  253 (387)
                      ++|.+.|.++++|.+|. ++.-.+.-+.|+..-  +   ++.+|++|+  ++|.|.|.+++++..     .++.+++.+.
T Consensus       187 eiad~vga~l~~D~aH~~GLIa~g~~~sP~~~a--D---vvt~tThKt--lrGPrggiI~~~~~~-----~~~~~~i~~a  254 (416)
T d1dfoa_         187 EIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHA--H---VVTTTTHKT--LAGPRGGLILAKGGS-----EELYKKLNSA  254 (416)
T ss_dssp             HHHHHTTCEEEEECTTTHHHHHHTSSCCCTTTS--S---EEEEESSST--TCCCSCEEEEESSCC-----HHHHHHHHHH
T ss_pred             HHHHhcCceEEcchhhhhcceeccccCCccccc--c---eeeeehhhc--ccCCCceEEEeccch-----HhHHHHHHhh
Confidence            88899999999999998 455445445555432  2   889999998  678898999986421     2455656544


Q ss_pred             hh--ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcH
Q 038416          254 LN--AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDD  331 (387)
Q Consensus       254 ~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  331 (387)
                      ..  ..+++.....++.+.++.+.....++...+++.+|++.+.+.|.+. |+.++........+++++.....     +
T Consensus       255 vfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~-G~~iv~ggTdnHlvlvdl~~~~~-----~  328 (416)
T d1dfoa_         255 VFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLER-GYKVVSGGTDNHLFLVDLVDKNL-----T  328 (416)
T ss_dssp             HTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTC-----C
T ss_pred             hCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhC-CcccccCCCCCceeEEEecccCC-----C
Confidence            22  2233444445554555554344557888899999999999999998 78866545556677888754322     3


Q ss_pred             HHHHHHHHHhcCeEEEcCCcc------CCCCeEEEEe------eCChHhHHHHHHHHHHHHHH
Q 038416          332 LEFCLKLAKEESVIILPGRTV------GMKNWLRIAF------AAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       332 ~~~~~~ll~~~gi~v~~g~~~------~~~~~~Ri~~------~~~~e~~~~~~~~l~~~~~~  382 (387)
                      ...+..+|++.||.++-....      ..+..+||+.      +..++++.++.+.|.++++.
T Consensus       329 G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~  391 (416)
T d1dfoa_         329 GKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDS  391 (416)
T ss_dssp             HHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence            456666779999998732221      1246799999      24678999998888888754

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.83  E-value=2.4e-18  Score=159.95  Aligned_cols=345  Identities=10%  Similarity=0.041  Sum_probs=221.3

Q ss_pred             CCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCC-------CCCCEEEcCChHHHHHHHHHhhcC-
Q 038416           24 LSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKL-------SPEDVYLTLGCSQAIEISLSVLAR-   95 (387)
Q Consensus        24 ~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~-------~~~~i~~~~g~~~a~~~~~~~l~~-   95 (387)
                      -+.++.++..+....-+.+...+...+...++++.+.+|+.+.+|++.       ....-++|+|+++++..++.+... 
T Consensus        83 ~~~~~~~l~~~~~~~~n~n~~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~  162 (476)
T d1js3a_          83 ASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTK  162 (476)
T ss_dssp             CCCHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhhcccccchhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHH
Confidence            345555555554444444444444455668899999999999888753       223568999999999988876431 


Q ss_pred             ---------CC---------CeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccC------ceE
Q 038416           96 ---------PG---------ANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADEN------TVA  151 (387)
Q Consensus        96 ---------~g---------~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~  151 (387)
                               .|         -.|++++-+|+++...+.  ..|+++..++++  +++.+|+++|++.+++.      +.+
T Consensus       163 ~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~--~lGl~~~~v~~d--~~~~md~~~L~~~i~~~~~~g~~p~~  238 (476)
T d1js3a_         163 VVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGL--IGGVKLKAIPSD--GKFAMRASALQEALERDKAAGLIPFF  238 (476)
T ss_dssp             HHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHH--HHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHhhcccccCcccccccCceEEEecccccHHHHHHHH--hcCceEEEeccC--CCCCcCHHHHHHHHHHHHhcCCCcEE
Confidence                     11         147788999999999999  999999988874  45689999999998653      345


Q ss_pred             EEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-ccccCCCccEEEEecCcccccccccceE
Q 038416          152 IVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-MGVFGSIVPVITLGSISKRWIVPGWRLG  230 (387)
Q Consensus       152 v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~s~sK~~~~~g~r~G  230 (387)
                      |+.+..++.+|.+=   ++++|+++|++||+|+++|.+|+++......... +..+..-  .-+..++||+++.| ..+|
T Consensus       239 VvataGtt~~G~iD---pl~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~a--DSit~d~HK~l~~P-~~~g  312 (476)
T d1js3a_         239 VVATLGTTSCCSFD---NLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFA--DSFNFNPHKWLLVN-FDCS  312 (476)
T ss_dssp             EEEEBSCTTTCCBC---CHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGC--SEEEECHHHHSSCC-SSCE
T ss_pred             EeecCCCccceeec---cHHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCccc--ceeeecCccccccC-Ccce
Confidence            66677789999994   4999999999999999999999986543332222 2222211  14455899996554 5678


Q ss_pred             EEEeeCCCCccc----chhHHHHHHhh-------hhccC-CcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHh
Q 038416          231 WLVTSDPNGILQ----NSGFVDSIKGC-------LNAAS-HPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERI  298 (387)
Q Consensus       231 ~i~~~~~~~~~~----~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l  298 (387)
                      +++.+++..+..    .+.+.......       ...+. ..-......+-..+.......+.+..++..++++++.+.+
T Consensus       313 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l  392 (476)
T d1js3a_         313 AMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFV  392 (476)
T ss_dssp             EEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecccchHHHHHHHhcChhhhccccccccccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Confidence            888876321100    00011000000       00000 0011111122233444456788899999999999999999


Q ss_pred             hcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee---CChHhHHHHHHH
Q 038416          299 KEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA---AEPATLEDGLER  375 (387)
Q Consensus       299 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~---~~~e~~~~~~~~  375 (387)
                      ++.|+++++..|.-+. +.+++....    .-..++.+.+.++..+.+.+.. .....++|+++.   +++++++.+++.
T Consensus       393 ~~~~~fel~~~p~l~i-V~Fr~~~~d----~~n~~l~~~l~~~G~~~~s~t~-~~g~~~lR~~i~n~~Tt~~did~~~~~  466 (476)
T d1js3a_         393 LQDPRFEVCAEVTLGL-VCFRLKGSD----GLNEALLERINSARKIHLVPCR-LRGQFVLRFAICSRKVESGHVRLAWEH  466 (476)
T ss_dssp             HHCTTEEECSCCCSSE-EEEEESSCH----HHHHHHHHHHHHHTSCBCEEEE-ETTEEEEEEECCCTTCCHHHHHHHHHH
T ss_pred             hcCCCeEEECCCceEE-EEEEccCCh----HHHHHHHHHHHhcCCEEEeeee-ECCEEEEEEEeCCCCCCHHHHHHHHHH
Confidence            9999999775665554 445553210    0123556666544334444422 222458999984   468899999999


Q ss_pred             HHHHHHHhh
Q 038416          376 IKAFCQRHA  384 (387)
Q Consensus       376 l~~~~~~~~  384 (387)
                      |++..+++.
T Consensus       467 i~~~a~~ll  475 (476)
T d1js3a_         467 IRGLAAELL  475 (476)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999988764

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.82  E-value=1.2e-17  Score=151.84  Aligned_cols=313  Identities=15%  Similarity=0.147  Sum_probs=206.2

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh-cCCCCeEEEcC
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL-ARPGANILIPR  104 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~g~~vl~~~  104 (387)
                      ....-++++.+.++.+... +....-..++++.+++++        +...++.+++||.|+.+++.++ +++||+|+++.
T Consensus        11 ~~~~~~~~~~~~l~~g~~~-~~~g~~v~~fE~~~a~~~--------g~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p~   81 (384)
T d1b9ha_          11 YDDAERNGLVRALEQGQWW-RMGGDEVNSFEREFAAHH--------GAAHALAVTNGTHALELALQVMGVGPGTEVIVPA   81 (384)
T ss_dssp             CCHHHHHHHHHHHHTSCCB-TTTCSHHHHHHHHHHHHT--------TCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEES
T ss_pred             CCHHHHHHHHHHHHcCCee-ecCCHHHHHHHHHHHHHH--------CcCeEEEeCCHHHHHHHHHHHcCCCCCCEEEEec
Confidence            4566678888888865321 122235688999999998        4467899999999999999998 68999999999


Q ss_pred             CCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEE
Q 038416          105 PGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIV  184 (387)
Q Consensus       105 p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~l  184 (387)
                      .+|......+.  ..|.+++.+++++ ..+.+|++.+++.+.+++++|++++   ..|....   +.++.++|+++++++
T Consensus        82 ~t~~a~~~ai~--~~g~~p~~~d~~~-~~~~~d~~~~~~~i~~~tk~i~~~~---~~g~~~d---~~~i~~~~~~~~i~l  152 (384)
T d1b9ha_          82 FTFISSSQAAQ--RLGAVTVPVDVDA-ATYNLDPEAVAAAVTPRTKVIMPVH---MAGLMAD---MDALAKISADTGVPL  152 (384)
T ss_dssp             SSCTHHHHHHH--HTTCEEEEECBCT-TTCCBCHHHHHHHCCTTEEEECCBC---GGGCCCC---HHHHHHHHHHHTCCB
T ss_pred             ccccccccccc--ccccccccccccc-cccccchhhhccccccccccccccc---ccccccc---cccchhhhhhhhhhh
Confidence            99999999999  9999999998864 3567899999999999999987544   5565544   888999999999999


Q ss_pred             eecccccccc-cCCCCCccccccCCCccEEEEecC--cccccccccceEEEEeeCCCCcccchhHHHHHHhhhhc-----
Q 038416          185 IADEVYNHLA-FGSTPYVPMGVFGSIVPVITLGSI--SKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNA-----  256 (387)
Q Consensus       185 i~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~s~--sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~-----  256 (387)
                      |+|.+++... +.|...   ..+..    +.+.||  +|.+  +....|.++++++       ++.+.++.....     
T Consensus       153 ieD~a~a~ga~~~g~~~---g~~g~----~~~~Sf~~~K~i--~~g~GG~i~t~~~-------~~~~~~~~~~~~g~~~~  216 (384)
T d1b9ha_         153 LQDAAHAHGARWQGKRV---GELDS----IATFSFQNGKLM--TAGEGGAVVFPDG-------ETEKYETAFLRHSCGRP  216 (384)
T ss_dssp             CEECTTCTTCEETTEEG---GGSSS----CEEEECCTTSSS--CSSSCEEEEECTT-------CHHHHHHHHHHTBTTCC
T ss_pred             hhhhceecccccCCEec---Ccccc----cceecccccccc--cccccchhhhhhH-------HHHHHHHHHHhcCCCCc
Confidence            9999998643 333222   22221    334454  6764  3344688888753       455555544321     


Q ss_pred             -------------cCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----ce-EEEEE
Q 038416          257 -------------ASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ----GA-MFVMV  318 (387)
Q Consensus       257 -------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~g-~~~~~  318 (387)
                                   .+.++.+..+.+..-|+     .+++..++-+++.+++.+.|++++++.....+.    .. ++..+
T Consensus       217 ~~~~~~~~~~~G~n~rms~l~Aaig~~qL~-----~ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~  291 (384)
T d1b9ha_         217 RDDRRYFHKIAGSNMRLNEFSASVLRAQLA-----RLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMF  291 (384)
T ss_dssp             TTCSSCCCCSCCCBCBCBHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEE
T ss_pred             cccccccccccccccccccchhhhhhhhhh-----hcccchhhhhhhhhhhhhhhhcccccccccccccccccccccccc
Confidence                         12233333333333333     256666677778888888888876654221111    11 12223


Q ss_pred             ecCcccccCCCcH-HHHHHHHHHhcCeEEEcCCcc----------CC-------------------CCeEEEEee--CC-
Q 038416          319 KLNVSMLEDIGDD-LEFCLKLAKEESVIILPGRTV----------GM-------------------KNWLRIAFA--AE-  365 (387)
Q Consensus       319 ~~~~~~~~~~~~~-~~~~~~ll~~~gi~v~~g~~~----------~~-------------------~~~~Ri~~~--~~-  365 (387)
                      .++...    .+. .++...| ++.||.+.+....          +.                   .+.+.+-+.  .+ 
T Consensus       292 ~~~~~~----~~~Rd~l~~~L-~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~  366 (384)
T d1b9ha_         292 RIPGLT----EERRNALVDRL-VEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAG  366 (384)
T ss_dssp             ECTTCC----HHHHHHHHHHH-HHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSC
T ss_pred             eecccc----cccHHHHHHHH-HHCCCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCC
Confidence            333210    012 2455555 7789988764320          00                   134666653  35 


Q ss_pred             hHhHHHHHHHHHHHHHH
Q 038416          366 PATLEDGLERIKAFCQR  382 (387)
Q Consensus       366 ~e~~~~~~~~l~~~~~~  382 (387)
                      ++|++..++.|++++++
T Consensus       367 e~ei~~I~~~i~~~l~~  383 (384)
T d1b9ha_         367 EPELHATAEIIADAVAR  383 (384)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            57999999999998875

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.82  E-value=2.9e-18  Score=151.39  Aligned_cols=328  Identities=15%  Similarity=0.077  Sum_probs=220.3

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCC------CCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCC
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSP------TLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGA   98 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~------~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~   98 (387)
                      -.++.+++++.+.+.+....+|+.      ..-..+++....+...+.|+  ...-+|- ..|++.|+.+++.+|++|||
T Consensus        34 ~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~--a~~anVq-p~SGs~An~av~~all~pGD  110 (405)
T d1kl1a_          34 FVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFG--AEHANVQ-PHSGAQANMAVYFTVLEHGD  110 (405)
T ss_dssp             CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHC--CSEEECC-CSSHHHHHHHHHHHHCCTTC
T ss_pred             cCCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhC--CCcceee-ccCchHHHHHHHHHhcCCCC
Confidence            478999999999998765544443      11234444444455554444  2222333 35578899999999999999


Q ss_pred             eEEEcCCCCcchHHHhh---ccCCCceeeeeccCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCccccCCHHHHHHHH
Q 038416           99 NILIPRPGYPLYEIHAA---GSNNNLEARHYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCGNVFSYQHLQKIA  174 (387)
Q Consensus        99 ~vl~~~p~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~~~~l~  174 (387)
                      +|+..++.+.+......   .+....+++.++++++ ++.+|.+++++.++. ++++|++.....|-=  ++   ++++.
T Consensus       111 ~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~-~~~ID~d~l~~~a~~~kPklIi~G~S~y~r~--~d---~~~~r  184 (405)
T d1kl1a_         111 TVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPE-THVIDYDDVREKARLHRPKLIVAAASAYPRI--ID---FAKFR  184 (405)
T ss_dssp             EEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTT-TCSBCHHHHHHHHHHHCCSEEEECCSSCCSC--CC---HHHHH
T ss_pred             EEEEeecccccccccCccccccceEEEEEEeccchh-cccccHHHHHHHHHhhCcceEEecccccccc--cC---hHHHH
Confidence            99988766655332222   1122356677777654 458999999997755 677776655444432  23   88888


Q ss_pred             HHHHhcCcEEeeccccc-ccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhh
Q 038416          175 RTARNLGIIVIADEVYN-HLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGC  253 (387)
Q Consensus       175 ~~~~~~~~~li~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~  253 (387)
                      ++|.+.|.+++.|-+|. ++...+.-+.|+..  .+   ++.+|.+|+  ++|.|.|.+++.+        ++.+++.+.
T Consensus       185 eIad~vga~l~~D~aH~~GLIa~g~~~~P~~~--aD---vvt~tThKt--lrGPrgg~I~~~~--------~~~~~i~~a  249 (405)
T d1kl1a_         185 EIADEVGAYLMVDMAHIAGLVAAGLHPNPVPY--AH---FVTTTTHKT--LRGPRGGMILCQE--------QFAKQIDKA  249 (405)
T ss_dssp             HHHHHHTCEEEEECTTTHHHHHTTSSCCSTTT--CS---EEEEESSST--TCCCSCEEEEECH--------HHHHHHHHH
T ss_pred             HHHhhhCCEEecchhhHhhhhhhhhcCChhhh--hh---heecccccc--ccCCCCceEEecc--------hhHHHHHhh
Confidence            99999999999999998 45555555566532  22   778899998  6888999999865        666666554


Q ss_pred             hh--ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcH
Q 038416          254 LN--AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDD  331 (387)
Q Consensus       254 ~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  331 (387)
                      ..  .-+++.....++.+.++.......++...+++.++++.+.+.|.+. |+.++........+++++.....    + 
T Consensus       250 vfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~-G~~vv~ggTd~H~vlvdl~~~~~----~-  323 (405)
T d1kl1a_         250 IFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNHLLLVDLRPQQL----T-  323 (405)
T ss_dssp             HTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTC----C-
T ss_pred             hCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC-CceeecCCCccceeeccccccCC----c-
Confidence            32  2233444444444444544333556888899999999999999988 78866444556678888754322    3 


Q ss_pred             HHHHHHHHHhcCeEEE----cCCc--cCCCCeEEEEe------eCChHhHHHHHHHHHHHHHH
Q 038416          332 LEFCLKLAKEESVIIL----PGRT--VGMKNWLRIAF------AAEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       332 ~~~~~~ll~~~gi~v~----~g~~--~~~~~~~Ri~~------~~~~e~~~~~~~~l~~~~~~  382 (387)
                      ...+..+|++.||.++    |+..  ...+..+||+.      +..++++.++.+.|.++++.
T Consensus       324 g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~~  386 (405)
T d1kl1a_         324 GKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKN  386 (405)
T ss_dssp             HHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence            3555667789999988    3321  11246899999      24678999999988888753

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=5.7e-18  Score=155.65  Aligned_cols=340  Identities=14%  Similarity=0.077  Sum_probs=205.6

Q ss_pred             cccCCCCCCCCCCCCCC-CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416            9 TRHSPWPRRPLGVSLLS-DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      .++|+.-|.-..  .++ .+|.+.+|+++++.......... ... +....+++.+....  +..-+.+++++++++|++
T Consensus        44 ~ylD~~~g~~~~--~lGh~~p~i~~Ai~~q~~~~~~~~~~~-~~~-~~~~~l~~~l~~~~--~~~~~~v~f~~sGseA~e  117 (429)
T d1s0aa_          44 RLVDGMSSWWAA--IHGYNHPQLNAAMKSQIDAMSHVMFGG-ITH-APAIELCRKLVAMT--PQPLECVFLADSGSVAVE  117 (429)
T ss_dssp             EEEESSTTTTTC--TTCBSCHHHHHHHHHHHHHCSCCCCSS-EEC-HHHHHHHHHHHHHS--CTTCCEEEEESSHHHHHH
T ss_pred             EEEECcccHHHH--hhcCCcHHHHHHHHHHHHhcCCcccCC-ccc-hHHHHHHHHHHhhh--ccCcceeeeccccccchh
Confidence            466665543322  234 68999999999887642211111 111 22333334333322  234568999999999999


Q ss_pred             HHHHhhc-------CCCCeEEEcCCCCcchHHHhhccCCCc-------------eeeeeccCC-CCCc---cCChhhHHH
Q 038416           88 ISLSVLA-------RPGANILIPRPGYPLYEIHAAGSNNNL-------------EARHYDLLP-EKRW---EVDLDGVEA  143 (387)
Q Consensus        88 ~~~~~l~-------~~g~~vl~~~p~~~~~~~~~~~~~~g~-------------~~~~~~~~~-~~~~---~~~~~~l~~  143 (387)
                      .+++...       ....+|+....+|++....+. +..+.             .....|... ....   ..+++++++
T Consensus       118 ~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~-~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (429)
T d1s0aa_         118 VAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAM-SVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFAR  196 (429)
T ss_dssp             HHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHH-TTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHH
T ss_pred             hhhhhhhheeecccccccEEEEecCCccccchhhh-hhcCCccccccccCccccccccccccccccccccchhhhhhhhh
Confidence            9988753       223589998888886543332 01111             111111110 0111   123445554


Q ss_pred             hhc--cCceEEEEeCC--CCCccc-cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecC
Q 038416          144 LAD--ENTVAIVIINP--GNPCGN-VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSI  218 (387)
Q Consensus       144 ~~~--~~~~~v~l~~p--~nptG~-~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~  218 (387)
                      .+.  .+..+.++..|  ++..|. .+|++.+++|.++|++||+++|+||++.+|...|..+. ...++-...++   ++
T Consensus       197 ~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~-~~~~~v~PDi~---~~  272 (429)
T d1s0aa_         197 LMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFA-CEHAEIAPDIL---CL  272 (429)
T ss_dssp             HHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSG-GGGGTCCCSEE---EE
T ss_pred             hhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccccccc-cccceeccccc---cc
Confidence            443  24556666776  355555 57889999999999999999999999999876664332 22222222233   56


Q ss_pred             cccccccccceEEEEeeCCCCcccchhHHHHHHhhh------hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHH
Q 038416          219 SKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCL------NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETAD  292 (387)
Q Consensus       219 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  292 (387)
                      +|.++..+.++|.+++++        ++.+.+....      ..+++.++++.+++.+.|+...++.   ..+...+.-+
T Consensus       273 gK~l~gG~~p~~av~~~~--------~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~~~---~~~~~~~~g~  341 (429)
T d1s0aa_         273 GKALTGGTMTLSATLTTR--------EVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGD---WQQQVADIEV  341 (429)
T ss_dssp             CGGGGTSSSCCEEEEECH--------HHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCH---HHHHHHHHHH
T ss_pred             ccccccccccccchhhHH--------HHHhccCCCCCcceeecCCCCCCcccchhhhcccccccccc---ccchhhHHHH
Confidence            799766668999999976        6777665421      2467788999999988887643322   3334444444


Q ss_pred             HHHHHhhcC---CCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEe--eCChH
Q 038416          293 ICYERIKEI---PCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAF--AAEPA  367 (387)
Q Consensus       293 ~~~~~l~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~--~~~~e  367 (387)
                      ++++.|+++   +.+..+  ..-|.+..+.+..+.     ....+... +.++|+.+.+.     ++.+|+++  ..+++
T Consensus       342 ~l~~~L~~l~~~~~v~~v--rg~Gl~~~~e~~~~~-----~~~~~~~~-~~~~Gl~~~~~-----g~~i~~~Ppl~it~~  408 (429)
T d1s0aa_         342 QLREQLAPARDAEMVADV--RVLGAIGVVETTHPV-----NMAALQKF-FVEQGVWIRPF-----GKLIYLMPPYIILPQ  408 (429)
T ss_dssp             HHHHHHGGGGGCTTEEEE--EEETTEEEEEESSCB-----CHHHHHHH-HHHTTEECCCB-----TTEEEECCCTTCCHH
T ss_pred             HHHHHHHHhccCCceEEE--eecccEEEEEecCcc-----cHHHHHHH-HHHCCcEEEec-----CCEEEEeCCcCCCHH
Confidence            555555443   332211  233556666665431     34455454 46679998774     47899997  46899


Q ss_pred             hHHHHHHHHHHHHHHh
Q 038416          368 TLEDGLERIKAFCQRH  383 (387)
Q Consensus       368 ~~~~~~~~l~~~~~~~  383 (387)
                      ++++++++|.+++++.
T Consensus       409 eid~~~~~l~~al~e~  424 (429)
T d1s0aa_         409 QLQRLTAAVNRAVQDE  424 (429)
T ss_dssp             HHHHHHHHHHHHTSSG
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999988764

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.82  E-value=2.4e-18  Score=159.42  Aligned_cols=311  Identities=14%  Similarity=0.083  Sum_probs=195.7

Q ss_pred             CCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCceee
Q 038416           45 CYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEAR  124 (387)
Q Consensus        45 ~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~  124 (387)
                      .|.......+|++.+++++        ..+.++++++|+.|+.+++.+++++||.|+.... +..+.....  ..|..+.
T Consensus        70 ~Y~~dpt~~~lE~~~a~l~--------G~e~al~~~SGt~An~~a~~~l~~~Gd~Vi~~~~-f~~~~~~i~--~~g~~~~  138 (456)
T d1c7ga_          70 AYAGSENFYHLEKTVKELF--------GFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMY-FTTTRFHQE--KNGATFV  138 (456)
T ss_dssp             CSSSCHHHHHHHHHHHHHH--------CCSEEEEESSHHHHHHHHHHHHCCTTEEEEESSC-CHHHHHHHH--HTTEEEE
T ss_pred             hccCCchHHHHHHHHHHHh--------CCCeEEECCCHHHHHHHHHHHhcCCCCeEecCcc-hHHHHHHHH--HcCceee
Confidence            4777778899999999999        4578899999999999999999999999887654 333444445  5676655


Q ss_pred             eeccC--------CCCCccCChhhHHHhhcc----CceEEEEeCCCCC-ccccCCHHHHHHHHHHHHhcCcEEeeccccc
Q 038416          125 HYDLL--------PEKRWEVDLDGVEALADE----NTVAIVIINPGNP-CGNVFSYQHLQKIARTARNLGIIVIADEVYN  191 (387)
Q Consensus       125 ~~~~~--------~~~~~~~~~~~l~~~~~~----~~~~v~l~~p~np-tG~~~~~~~~~~l~~~~~~~~~~li~D~~~~  191 (387)
                      .+...        ....+.+|++.|++++++    ++.++++.+++|+ .|+.++.+++++|.++|++||+++++|+++.
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~  218 (456)
T d1c7ga_         139 DIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRC  218 (456)
T ss_dssp             ECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTH
T ss_pred             eccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchh
Confidence            44321        112356899999998865    3457888899885 5788999999999999999999999999976


Q ss_pred             ccc----------cCCCCCccc-cccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhh---c-
Q 038416          192 HLA----------FGSTPYVPM-GVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLN---A-  256 (387)
Q Consensus       192 ~~~----------~~~~~~~~~-~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~---~-  256 (387)
                      ...          +.+.....+ ..+.... .++..|++|.++.++  .|+++.++       +++.++.+....   . 
T Consensus       219 ~~~a~~~~~~~~~~~~~~i~~i~~~~~~~a-d~~s~s~~K~~~~~~--GG~i~~~~-------~~l~~~~r~~~~~~~g~  288 (456)
T d1c7ga_         219 VENAYFIKEQEAGYENVSIKDIVHEMFSYA-DGCTMSGKKDCLVNI--GGFLCMND-------EEMFSAAKELVVVYEGM  288 (456)
T ss_dssp             HHHHHHHHHHSTTCTTSCHHHHHHHHHTTC-SEEEEETTTTTCCSS--CEEEEESC-------HHHHHHHHHHHHHHTCC
T ss_pred             hcchhhhcccccccCCCChhhhcccccccc-ccEEEeccccccccc--eeEEEcCC-------HHHHHHHHHhccccCCC
Confidence            311          111111110 0000111 155668999965543  36777654       256666654321   1 


Q ss_pred             --cCCcchHHHHHHHHHhhh-ccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcc--cccC-CCc
Q 038416          257 --ASHPVTFIQAAVPRIVDE-TNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVS--MLED-IGD  330 (387)
Q Consensus       257 --~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~-~~~  330 (387)
                        .+..+.....++...+.. ..+++    .++..++.+++.+.|++. ++.++ .|.++..+++.....  ..+. ...
T Consensus       289 ~~~g~~~~~~~~a~a~~l~e~~~~~~----l~~r~~~~~~L~e~L~~~-g~~vv-~p~g~~~v~vda~~~~~~i~~~~~~  362 (456)
T d1c7ga_         289 PSYGGLAGRDMEAMAIGLREAMQYEY----IEHRVKQVRYLGDKLREA-GVPIV-EPTGGHAVFLDARRFCPHLTQDQFP  362 (456)
T ss_dssp             TTTTTCCHHHHHHHHHHHHHHTCHHH----HHHHHHHHHHHHHHHHHT-TCCBC-SSCCSSEEEEEHHHHCTTSCGGGCH
T ss_pred             cccchhhHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHHHHhc-cCCcc-cCCCCcceeEechhhccCCCccccc
Confidence              112222223333322322 11233    333345556777788887 66644 677777766643211  1111 013


Q ss_pred             HHHHHHHHHHhcCeEEEcCCcc-------------CCCCeEEEEee---CChHhHHHHHHHHHHHHHH
Q 038416          331 DLEFCLKLAKEESVIILPGRTV-------------GMKNWLRIAFA---AEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       331 ~~~~~~~ll~~~gi~v~~g~~~-------------~~~~~~Ri~~~---~~~e~~~~~~~~l~~~~~~  382 (387)
                      ...+...++.+.||...+...+             .....+|+++.   .++++++..++.|+++.++
T Consensus       363 ~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~  430 (456)
T d1c7ga_         363 AQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQH  430 (456)
T ss_dssp             HHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHHhh
Confidence            4566777777889875532111             11246999985   3889999999999988754

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=4.6e-18  Score=156.62  Aligned_cols=338  Identities=16%  Similarity=0.115  Sum_probs=203.6

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc--CCCCeEEEc
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA--RPGANILIP  103 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~g~~vl~~  103 (387)
                      .+|.+.+++++++.....  ........+.+..+++.+.+..+ +-..+.++++++|++|++.+++...  ....+|+..
T Consensus        57 ~~p~i~~ai~~q~~~~~~--~~~~~~~~~~~~~la~~l~~~~p-~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~  133 (425)
T d1sffa_          57 LHPKVVAAVEAQLKKLSH--TCFQVLAYEPYLELCEIMNQKVP-GDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAF  133 (425)
T ss_dssp             TCHHHHHHHHHHTTTCSC--CCTTTEECHHHHHHHHHHHHHSS-CSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CcHHHHHHHHHHHhhcCC--cccccccCcHHHHHHHHHHhhhh-hcccceeeeeccccchhhhHHHHhhhhhcccceEee
Confidence            678999999999876321  11111223444555555554332 1123578999999999999998864  233688898


Q ss_pred             CCCCcchHHHhhccCCCc-------------eeeeeccC--CCCCccCC----hhhHHH-hhccCceEEEEeCC-CCCcc
Q 038416          104 RPGYPLYEIHAAGSNNNL-------------EARHYDLL--PEKRWEVD----LDGVEA-LADENTVAIVIINP-GNPCG  162 (387)
Q Consensus       104 ~p~~~~~~~~~~~~~~g~-------------~~~~~~~~--~~~~~~~~----~~~l~~-~~~~~~~~v~l~~p-~nptG  162 (387)
                      ..+|++...... +..|.             .....+.+  ........    .+.+.. ....+..+.++..| +...|
T Consensus       134 ~~~yHG~t~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G  212 (425)
T d1sffa_         134 SGAYHGRTHYTL-ALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGG  212 (425)
T ss_dssp             TTCCCCSSHHHH-HHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTT
T ss_pred             cCCCcCccccch-hhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEecCccCCCC
Confidence            999987654333 01111             01111111  01100000    111111 11234455666777 54566


Q ss_pred             c-cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcc
Q 038416          163 N-VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGIL  241 (387)
Q Consensus       163 ~-~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~  241 (387)
                      . .++++.++.|.++|++||+++|+||++.++...|..... ..++-...   +.+++|.+ ..|+++|.+++++     
T Consensus       213 ~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~-~~~gv~PD---i~~~gK~l-~gG~P~~av~~~~-----  282 (425)
T d1sffa_         213 FYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAM-EQMGVAPD---LTTFAKSI-AGGFPLAGVTGRA-----  282 (425)
T ss_dssp             SCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGG-GGTTSCCS---EEEECGGG-GTSSCCEEEEEEH-----
T ss_pred             cccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHH-HhcCCCcc---ceeccccc-CCCcceEEEEEcH-----
Confidence            5 467888999999999999999999999987655543322 22222222   34578996 5578999999986     


Q ss_pred             cchhHHHHHHhhh-hccCCcchHHHHHHHHHhhhccHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEe
Q 038416          242 QNSGFVDSIKGCL-NAASHPVTFIQAAVPRIVDETNEAF-FAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVK  319 (387)
Q Consensus       242 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~  319 (387)
                         ++.+.+.... ..+++.++++++++.+.|+...+.. +++..+.-.+..+.+.+.+++.|.+..+  ...|.++.+.
T Consensus       283 ---~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~v--rg~Gl~~~i~  357 (425)
T d1sffa_         283 ---EVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDV--RGLGAMIAIE  357 (425)
T ss_dssp             ---HHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEE--EEETTEEEEE
T ss_pred             ---HHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHhhCCceEEE--EccccEEEEE
Confidence               5665554433 2567888999999999888755433 3333344445555555556666533312  2335555555


Q ss_pred             cCcccccCCCc---HHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHhhh
Q 038416          320 LNVSMLEDIGD---DLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRHAK  385 (387)
Q Consensus       320 ~~~~~~~~~~~---~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~~  385 (387)
                      +.........+   ...+..++ .++|+.+.++..  ..+.+|+++.  +++++++++++++++++++.++
T Consensus       358 f~~~~~~~~~~~~~~~~~~~~l-~~~Gvl~~~~g~--~~n~i~~~PpL~it~~eid~~l~~l~~al~eikk  425 (425)
T d1sffa_         358 LFEDGDHNKPDAKLTAEIVARA-RDKGLILLSCGP--YYNVLRILVPLTIEDAQIRQGLEIISQCFDEAKQ  425 (425)
T ss_dssp             EBGGGCTTSBCHHHHHHHHHHH-HHTTEECEEEST--TSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHCC
T ss_pred             EeccCccCCccHHHHHHHHHHH-HHCCCEEeccCC--CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            53321111111   13444544 566998877532  2467999984  6899999999999999998764

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=1.5e-18  Score=161.58  Aligned_cols=315  Identities=13%  Similarity=0.055  Sum_probs=189.6

Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCEEEcCChH-HHHHHHHHhh---cCCCCeEEEcCCCCcchHHHhhccCCCceeeeecc
Q 038416           53 PSARRGIADYLNRDLPYKLSPEDVYLTLGCS-QAIEISLSVL---ARPGANILIPRPGYPLYEIHAAGSNNNLEARHYDL  128 (387)
Q Consensus        53 ~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~-~a~~~~~~~l---~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~  128 (387)
                      ..++..+.+++.+.+|.+... ..++++|++ .++.+++.++   ..+++.|+++...|.++...+.  ..|++++.++.
T Consensus        93 ~~le~~~~~~~~~l~g~~~~~-~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~--~~g~~~~~v~~  169 (445)
T d3bc8a1          93 NKITNSLVLNVIKLAGVHSVA-SCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMV--TAGFEPVVIEN  169 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCTTCC-EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHH--HTTCEEEEECC
T ss_pred             HHHHHHHHHHHHHHhCCCccc-CccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHH--HcCCeeEEEEe
Confidence            457777777777766654333 444555554 4555444444   3456899999999999999999  99999888764


Q ss_pred             CC-CCCccCChhhHHHhhc----cCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcc-
Q 038416          129 LP-EKRWEVDLDGVEALAD----ENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVP-  202 (387)
Q Consensus       129 ~~-~~~~~~~~~~l~~~~~----~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~-  202 (387)
                      .+ .+.+.+|+++|+++++    +++.+|+++.|++++|.+-+   +++|+++|+++|+++|+|++++.+......... 
T Consensus       170 ~~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~  246 (445)
T d3bc8a1         170 VLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQ  246 (445)
T ss_dssp             EEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHH
T ss_pred             eccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehh---HHHHHHHHHHhCCcEEEEccchhhhhhccccchh
Confidence            32 3457899999999884    36788899999999999965   899999999999999999999853311000000 


Q ss_pred             ccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhhhhcc-CCcchHHHHHHHHHhhhccHHHHH
Q 038416          203 MGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAA-SHPVTFIQAAVPRIVDETNEAFFA  281 (387)
Q Consensus       203 ~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~  281 (387)
                      ...+.  .-.++..|.+|.++.+. ..|+++.++       ....+.+....... .......+++....+   ....+.
T Consensus       247 ~~~~~--~vd~~~~s~hK~~~~p~-g~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~  313 (445)
T d3bc8a1         247 GARVG--RIDAFVQSLDKNFMVPV-GGAIIAGFN-------EPFIQDISKMYPGRASASPSLDVLITLLSL---GCSGYR  313 (445)
T ss_dssp             HHHHS--CCCEEEEEHHHHHSCCS-SCEEEEESC-------HHHHHHHHHHSCSCBCSHHHHHHHHHHHHH---HHHHHH
T ss_pred             ccCcC--CcceEEecCccccccCC-CCceeeeCC-------hHHHHHHHHHHhhcccCcchHHHHHHHHHH---hhhcch
Confidence            01111  11266788999865443 356776654       24555554433211 122222222222222   223344


Q ss_pred             HHHHHHHHHHHHHHHHhhcCC---CCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEE----cCC----
Q 038416          282 KIIGLLKETADICYERIKEIP---CITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIIL----PGR----  350 (387)
Q Consensus       282 ~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----~g~----  350 (387)
                      ...+....+.+++.+.|+++.   +..+...+......+..+.........+..++...| .+.||...    ++.    
T Consensus       314 ~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L-~~~gI~~~~~~~~~~~~~i  392 (445)
T d3bc8a1         314 KLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSML-FTRQVSGARAVPLGNVQTV  392 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHH-HHTTCCSCEEECSCCEEEE
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccccCCCCHHHHHHHH-HHcCCCcceeeccccccch
Confidence            555555555555555554421   333333444444444444332111111333454544 55576311    111    


Q ss_pred             ---c---cCC------CCeEEEEee--CChHhHHHHHHHHHHHHHHhhhcC
Q 038416          351 ---T---VGM------KNWLRIAFA--AEPATLEDGLERIKAFCQRHAKKQ  387 (387)
Q Consensus       351 ---~---~~~------~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~~~~~  387 (387)
                         .   ++.      ...+|++++  .+++|++.+++.|++++++++++|
T Consensus       393 ~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~rk~~  443 (445)
T d3bc8a1         393 SGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKEQ  443 (445)
T ss_dssp             TTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence               0   111      256898884  588999999999999999998763

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.81  E-value=3.9e-18  Score=154.70  Aligned_cols=313  Identities=17%  Similarity=0.169  Sum_probs=202.1

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc--CCCCeEEEc
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA--RPGANILIP  103 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~g~~vl~~  103 (387)
                      .+|.+.+++.+++++...  .+.. -..+.+..+++.+.....  ...+.+++++++++|++.+++...  ....+|+..
T Consensus        54 ~hp~v~~a~~~~~~~~~~--~~~~-~~~~~~~~la~~l~~~~~--~~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~  128 (387)
T d1vefa1          54 GNPEVVEAVKRQAETLMA--MPQT-LPTPMRGEFYRTLTAILP--PELNRVFPVNSGTEANEAALKFARAHTGRKKFVAA  128 (387)
T ss_dssp             TCHHHHHHHHHHHHHCCC--CCTT-SCCHHHHHHHHHHHHTSC--TTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred             CcHHHHHHHHHHHHhhcc--cccc-cCCchHHHHHHHhhhhcc--ccceeeccccCchHHHHHHHHHHHhhcccceeccc
Confidence            579999999999986422  2211 123555666665554322  223579999999999999998863  233788888


Q ss_pred             CCCCcchHHHhhccCCCc------------eeeeeccCCCCCccCChhhHHHhhccCceEEEEeCC-CCCcccc-CCHHH
Q 038416          104 RPGYPLYEIHAAGSNNNL------------EARHYDLLPEKRWEVDLDGVEALADENTVAIVIINP-GNPCGNV-FSYQH  169 (387)
Q Consensus       104 ~p~~~~~~~~~~~~~~g~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p-~nptG~~-~~~~~  169 (387)
                      ..+|++....+. +..|-            ++..+|.       -|.++|++.++++.-+| +..| +...|.. ++++.
T Consensus       129 ~~~yHG~t~~~~-~~s~~~~~~~~~~p~~~~~~~~p~-------~d~~~l~~~~~~~iAav-i~EPi~g~~G~~~~~~~~  199 (387)
T d1vefa1         129 MRGFSGRTMGSL-SVTWEPKYREPFLPLVEPVEFIPY-------NDVEALKRAVDEETAAV-ILEPVQGEGGVRPATPEF  199 (387)
T ss_dssp             TTCCCCSSHHHH-HTCCCHHHHGGGCSCSSCEEEECT-------TCHHHHHHHCCTTEEEE-EECSEETTTTSEECCHHH
T ss_pred             ccCCCCCccceE-eccCCccccCCCCCCCCCceEeCC-------CCHHHHHHhcCCCeEEE-EEECCCCCCCCccCCHHH
Confidence            888887543333 02221            1122221       26889999887665555 4566 5556764 77888


Q ss_pred             HHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHH
Q 038416          170 LQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDS  249 (387)
Q Consensus       170 ~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~  249 (387)
                      ++++.++|++||+++|+||++++|...|.... ...++-...   +.+++|.+ ..|..++.++..+        +..+.
T Consensus       200 l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~-~~~~~v~PD---i~~~gK~l-~gG~~~~~~~~~~--------~~~~~  266 (387)
T d1vefa1         200 LRAAREITQEKGALLILDEIQTGMGRTGKRFA-FEHFGIVPD---ILTLAKAL-GGGVPLGVAVMRE--------EVARS  266 (387)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTTTTTTTSSSST-HHHHTCCCS---EEEECGGG-GTTSSCEEEEEEH--------HHHHT
T ss_pred             HHHHHHHHHHcCceEEecccccccCccCCCcc-cccCCcCCc---eeeecccC-CCCccccccccce--------eeeec
Confidence            99999999999999999999999866664332 222222222   33567995 4678888888865        45544


Q ss_pred             HHhhh-hccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-CCCceEEEEEecCcccccC
Q 038416          250 IKGCL-NAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPV-KPQGAMFVMVKLNVSMLED  327 (387)
Q Consensus       250 ~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~  327 (387)
                      +.... ..+++.++++.+++.+.|+...+   ....+++.+..+++.+.|+++.. ..+. ....|.+..+.++.     
T Consensus       267 ~~~~~~g~T~~gnPla~aaa~a~L~~l~~---~~~~~~v~~~g~~l~~~L~~l~~-~~v~~vrg~Gl~~~ie~~~-----  337 (387)
T d1vefa1         267 MPKGGHGTTFGGNPLAMAAGVAAIRYLER---TRLWERAAELGPWFMEKLRAIPS-PKIREVRGMGLMVGLELKE-----  337 (387)
T ss_dssp             SCTTSSCCSSTTCHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCC-TTEEEEEEETTEEEEEESS-----
T ss_pred             cccCCccccCCCCcchhhhcccchhhccc---ccccchHhhhhHHHHHHHHhcCC-CceEEEeecceEEEEEEeC-----
Confidence            43332 25677899999998888876433   23345555566677777776522 1111 12335566666654     


Q ss_pred             CCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHH
Q 038416          328 IGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFC  380 (387)
Q Consensus       328 ~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~  380 (387)
                        +.......++.+.|+.+.+..    .+.+|+.+.  ++++++++++++|++++
T Consensus       338 --~~~~~~~~~~~~~g~l~~~~g----~~~ir~~Ppl~it~~~ld~~~~~i~~aL  386 (387)
T d1vefa1         338 --KAAPYIARLEKEHRVLALQAG----PTVIRFLPPLVIEKEDLERVVEAVRAVL  386 (387)
T ss_dssp             --CSHHHHHHHHHHHCEECEESS----TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             --CchHHHHHHHHHCCCeEEecC----CCEEEEECCccCCHHHHHHHHHHHHHHh
Confidence              223444555566688766542    468899974  68999999999999876

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.80  E-value=9.4e-18  Score=153.36  Aligned_cols=326  Identities=14%  Similarity=0.118  Sum_probs=196.8

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc----------C
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA----------R   95 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~----------~   95 (387)
                      .+|.+.+|+++++.+....  +. .......+.+++.+...    ...+.+.++.++++++..+++...          .
T Consensus        56 ~~p~v~~Ai~~q~~~~~~~--~~-~~~~~~~~~~~~~~~~~----~~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~  128 (404)
T d1z7da1          56 CHPNILNAMINQAKNLTIC--SR-AFFSVPLGICERYLTNL----LGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPE  128 (404)
T ss_dssp             TCHHHHHHHHHHHTTCSCC--CT-TSEEHHHHHHHHHHHHH----HTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCT
T ss_pred             CcHHHHHHHHHHHHhCCCc--cc-ccchHHHHHHHHhhhhc----cccceeeeeccccchHHHHHHHHHHHHhhcccccc
Confidence            5889999999988763221  11 11112223333333331    145688899999999999987753          1


Q ss_pred             CCCeEEEcCCCCcchHHHhhccCC-Cceee---eeccCCCC--CccCChhhHHHhhccCceEEEEeCC-CCCcccc-CCH
Q 038416           96 PGANILIPRPGYPLYEIHAAGSNN-NLEAR---HYDLLPEK--RWEVDLDGVEALADENTVAIVIINP-GNPCGNV-FSY  167 (387)
Q Consensus        96 ~g~~vl~~~p~~~~~~~~~~~~~~-g~~~~---~~~~~~~~--~~~~~~~~l~~~~~~~~~~v~l~~p-~nptG~~-~~~  167 (387)
                      ....++....+|++......  .. +....   ..|..+..  -..-+.+.++..+.+...+.++..| +...|.. +|+
T Consensus       129 ~~~~~~~~~~~~hg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~~G~~~~~~  206 (404)
T d1z7da1         129 NMAKIVVCKNNFSGRTLGCI--SASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSD  206 (404)
T ss_dssp             TCCEEEEETTC----------------------------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCT
T ss_pred             cccccccccccCCCCccccc--ccccccccccCCCCCCccccccccchHHHHHHHhcCCCEEEEEEEEEcCCCCCccCCH
Confidence            12467777777776443333  11 11110   00100000  0012566777777666666777777 5566765 567


Q ss_pred             HHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHH
Q 038416          168 QHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFV  247 (387)
Q Consensus       168 ~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  247 (387)
                      +.+++|.++|++||+++|+||++.+|...|..+. ...++-...++   +++|.++..++++|.+++++        ++.
T Consensus       207 ~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~-~e~~gv~PDiv---t~gK~l~gG~~p~~~v~~~~--------~i~  274 (404)
T d1z7da1         207 NYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLC-VHHYNVKPDVI---LLGKALSGGHYPISAVLAND--------DIM  274 (404)
T ss_dssp             THHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSG-GGGGTCCCSEE---EECGGGGTTSSCCEEEEECH--------HHH
T ss_pred             HHHHHHHHHHHHcCCEEEEEcCccCCCccccccc-ccccCCCCCEE---EEcccccCCCCCcccccchH--------HHH
Confidence            7799999999999999999999998865554332 22222222233   67899765558999999976        666


Q ss_pred             HHHHhhh-hccCCcchHHHHHHHHHhhhccH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccc
Q 038416          248 DSIKGCL-NAASHPVTFIQAAVPRIVDETNE-AFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSML  325 (387)
Q Consensus       248 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~  325 (387)
                      +.+.... ..+++.++++++++.+.|+...+ ..+++..+.-....+.+.+.+++.+.+..+  ...|.++.+.+.... 
T Consensus       275 ~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~v--rg~Gl~~~i~~~~~~-  351 (404)
T d1z7da1         275 LVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDV--RGKGLLCAIEFKNEL-  351 (404)
T ss_dssp             TTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEE--EEETTEEEEEECTTT-
T ss_pred             ccCCCCCcCcCCCCCcchhhhhhhhhhhhhcchhhhhhccchhHHHHHHHHHHhcCCCeEEE--EeeCcEEEEEEcCCc-
Confidence            5555443 24567889999998888875333 333444444555556666666666543312  233556666665422 


Q ss_pred             cCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHh
Q 038416          326 EDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       326 ~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                         ....++..++ .++|+.+.+..    ++.+|+.+.  ++++++++++++|.++++++
T Consensus       352 ---~~~~~~~~~l-~~~Gl~~~~~~----~~~ir~~Ppl~it~~~id~~~~~l~~alk~~  403 (404)
T d1z7da1         352 ---VNVLDICLKL-KENGLITRDVH----DKTIRLTPPLCITKEQLDECTEIIVKTVKFF  403 (404)
T ss_dssp             ---CCHHHHHHHH-HHTTEECCEET----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ---ccHHHHHHHH-HhCCeEEecCC----CCEEEEECCcCCCHHHHHHHHHHHHHHHHhh
Confidence               1344555555 56699886642    577999874  68999999999999999875

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.79  E-value=9.3e-18  Score=154.42  Aligned_cols=345  Identities=13%  Similarity=0.086  Sum_probs=200.6

Q ss_pred             ccccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHH
Q 038416            8 ETRHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIE   87 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~   87 (387)
                      +.++|.+-|.-...-.+ .+|.+.+|+++++.....  +...   ......+++.+....+   ..+.+++++++++|++
T Consensus        52 ~~ylD~~~~~~~~~lGh-~hp~i~~ai~~~~~~~~~--~~~~---~~~~~~la~~~~~~~~---~~~~v~f~~sGseA~e  122 (427)
T d2gsaa_          52 NRYIDYVGTWGPAICGH-AHPEVIEALKVAMEKGTS--FGAP---CALENVLAEMVNDAVP---SIEMVRFVNSGTEACM  122 (427)
T ss_dssp             CEEEESSGGGTTTTTCB-TCHHHHHHHHHHHTTCSC--CSSC---CHHHHHHHHHHHHHST---TCSEEEEESSHHHHHH
T ss_pred             CEEEEechhHHHHhccC-CcHHHHHHHHHHHHhcCc--cccc---hhHHHHHHHHHHhhCC---ccccccccCCcHHHHH
Confidence            34555544332222233 588999999999976432  1111   2445566666655433   3468899999999999


Q ss_pred             HHHHhhc--CCCCeEEEcCCCCcchHHHhhccCCCceeee--eccCC--------C--CCccCChhhHHHhhcc--CceE
Q 038416           88 ISLSVLA--RPGANILIPRPGYPLYEIHAAGSNNNLEARH--YDLLP--------E--KRWEVDLDGVEALADE--NTVA  151 (387)
Q Consensus        88 ~~~~~l~--~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~--~~~~~--------~--~~~~~~~~~l~~~~~~--~~~~  151 (387)
                      .+++...  ....+|+....+|++...... +..|-....  +|..+        .  ....-|++.+++.++.  +..+
T Consensus       123 ~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~ia  201 (427)
T d2gsaa_         123 AVLRLMRAYTGRDKIIKFEGCYHGHADMFL-VKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIA  201 (427)
T ss_dssp             HHHHHHHHHHCCCEEEEETTCCCCSCGGGC-SSCCHHHHHTTCCSCSSSCHHHHTTEEEECTTCHHHHHHHHTTSTTTEE
T ss_pred             HHHHHHHHhcCCCeEEEEecccccCcceee-eecCCcccccCCCCCCCCcccCccceeccCcchHHHHHHHHHhCCCCeE
Confidence            9999764  234789999999987543332 011111100  00000        0  0012378889988875  3455


Q ss_pred             EEEeCC-CCCcccc-CCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccce
Q 038416          152 IVIINP-GNPCGNV-FSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRL  229 (387)
Q Consensus       152 v~l~~p-~nptG~~-~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~  229 (387)
                      .++..| +...|.. +|++.+++|.++|++||+++|+||++.++.. |... ....++....++   .++|.+ ..|+++
T Consensus       202 avi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~-g~~~-~~~~~gi~PDi~---~~gK~l-ggG~p~  275 (427)
T d2gsaa_         202 GVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRI-AYGG-VQEKFGVTPDLT---TLGKII-GGGLPV  275 (427)
T ss_dssp             EEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTT-BTTC-HHHHTTCCCSEE---EECGGG-GTTSCC
T ss_pred             EEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeecccccccee-cccc-hHHhcCCCHHHH---hhhhcc-CCCcce
Confidence            566677 4445664 5777799999999999999999999998743 4322 222233222333   466985 467889


Q ss_pred             EEEEeeCCCCcccchhHHHHHHhhh----hccCCcchHHHHHHHHHhhhccHH-HHHHHHHHHHHHHHHHHHHhhcCCCC
Q 038416          230 GWLVTSDPNGILQNSGFVDSIKGCL----NAASHPVTFIQAAVPRIVDETNEA-FFAKIIGLLKETADICYERIKEIPCI  304 (387)
Q Consensus       230 G~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~  304 (387)
                      |.+++++        ++.+.+....    ..+++.++.+.+++.+.|+...+. .+++..+.-.+.++.+.+..++.+..
T Consensus       276 ~a~~~~~--------~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~  347 (427)
T d2gsaa_         276 GAYGGKR--------EIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHA  347 (427)
T ss_dssp             EEEEECH--------HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             eeeeehH--------HHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhhhhHHhhhhHHHHHHHHHHHHHHhhcCCC
Confidence            9988876        6666655421    245678899999888887764432 22333333333444444444444321


Q ss_pred             CCCCCCCceEEEEEecCcccccC-----CCcH---HHHHHHHHHhcCeEEEcCCccCCCCeEEEEeeCChHhHHHHHHHH
Q 038416          305 TCPVKPQGAMFVMVKLNVSMLED-----IGDD---LEFCLKLAKEESVIILPGRTVGMKNWLRIAFAAEPATLEDGLERI  376 (387)
Q Consensus       305 ~~~~~~~~g~~~~~~~~~~~~~~-----~~~~---~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~~~~e~~~~~~~~l  376 (387)
                      ..+ ...++++ .+.+.......     ..+.   ..+...+ .++||.+.|+..   .. +-+++.+++++|+++++++
T Consensus       348 ~~v-~~~ggm~-~i~~~~~~v~~~~~~~~~d~~~~~~~~~~l-l~~Gv~l~p~~~---~~-~~~~l~~Te~dId~~l~al  420 (427)
T d2gsaa_         348 ACG-GQVSGMF-GFFFTEGPVHNYEDAKKSDLQKFSRFHRGM-LEQGIYLAPSQF---EA-GFTSLAHTEEDIDATLAAA  420 (427)
T ss_dssp             CEE-EEETTEE-EEESSSCCCCSHHHHTTSCHHHHHHHHHHH-HHTTEECCSSTT---SC-EECCTTCCHHHHHHHHHHH
T ss_pred             cEE-cccCCeE-EEEEeccCCCCHHHhhcccHHHHHHHHHHH-HHCCEEECCCCC---cc-eeCCCCCCHHHHHHHHHHH
Confidence            212 1223332 22221110000     0011   2334444 456999887532   22 2355678999999999999


Q ss_pred             HHHHHHh
Q 038416          377 KAFCQRH  383 (387)
Q Consensus       377 ~~~~~~~  383 (387)
                      +++++++
T Consensus       421 ~~al~~L  427 (427)
T d2gsaa_         421 RTVMSAL  427 (427)
T ss_dssp             HHHHTCC
T ss_pred             HHHHHhC
Confidence            9998753

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.79  E-value=8.6e-17  Score=144.87  Aligned_cols=338  Identities=14%  Similarity=0.047  Sum_probs=225.1

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCC------CCCcHHHHHHHHHHHhhcCCCCCCCCCEEE-cCChHHHHHHHHHhhcCCC
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSP------TLGVPSARRGIADYLNRDLPYKLSPEDVYL-TLGCSQAIEISLSVLARPG   97 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~------~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~-~~g~~~a~~~~~~~l~~~g   97 (387)
                      -.++.+++++.+.+.+....+|+.      ..-..+++....+...+.|+...+...+-+ ..|++.|+.+++.+|++||
T Consensus        42 ~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~all~pg  121 (470)
T d1rv3a_          42 FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPH  121 (470)
T ss_dssp             CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTT
T ss_pred             cCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHHHhcCCC
Confidence            588999999999998765444442      223456666666666666764433334433 3668889999999999999


Q ss_pred             CeEEEcCCCCcchHHHhh--------ccCCCceeeeeccCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCccccCCHH
Q 038416           98 ANILIPRPGYPLYEIHAA--------GSNNNLEARHYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        98 ~~vl~~~p~~~~~~~~~~--------~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~  168 (387)
                      |+|+.....+.+......        .+....+...+++++++ +.+|.+++++..+. ++++|++....+|-  .++  
T Consensus       122 D~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~-~~IDyd~l~~~a~~~kPklIi~G~S~y~r--~~d--  196 (470)
T d1rv3a_         122 GRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDT-GYIDYDRLEENARLFHPKLIIAGTSCYSR--NLD--  196 (470)
T ss_dssp             CEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTT-CSBCHHHHHHHHHHHCCSEEEECCSSCCS--CCC--
T ss_pred             CeEeeeccccCCcccccccccCCCcccccceeEeeEEEEeccc-CcccHHHHHHHHHhhCcceEeechhhccc--cCC--
Confidence            999987765554332221        00112456677776543 47999999997654 67777765555443  233  


Q ss_pred             HHHHHHHHHHhcCcEEeeccccc-ccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcc------
Q 038416          169 HLQKIARTARNLGIIVIADEVYN-HLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGIL------  241 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~------  241 (387)
                       ++++.++|.+.|.++++|-+|. ++.-+|.-..|+.. . +   ++.+|.+|.  ++|.|.|.|++++...-.      
T Consensus       197 -~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~~-a-D---vvt~tTHKt--lrGPrgGiI~~~~~~~~~~~~~~~  268 (470)
T d1rv3a_         197 -YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEH-C-H---VVTTTTHKT--LRGCRAGMIFYRRGVRSVDPKTGK  268 (470)
T ss_dssp             -HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGT-C-S---EEEEESSGG--GCCCSCEEEEEECSBCC-------
T ss_pred             -HHHHHHHHhccCCeEEecchhhhhhccccccCChhhe-e-e---eeeeehhhh--ccCCcceEEEEccccccccccccc
Confidence             7888888889999999999998 45555555566632 2 3   889999998  688899999987531000      


Q ss_pred             -cchhHHHHHHhhhh--ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEE
Q 038416          242 -QNSGFVDSIKGCLN--AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMV  318 (387)
Q Consensus       242 -~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~  318 (387)
                       ...++.+++.+...  .-+++.....++.+.++.......+....+++..+++.+.+.|.+. |+.++........+++
T Consensus       269 ~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~-G~~v~~ggTdnHlvlv  347 (470)
T d1rv3a_         269 EILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-GYKIVTGGSDNHLILV  347 (470)
T ss_dssp             CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEE
T ss_pred             hhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhC-CceeccCCCCCceEEE
Confidence             01135555554421  2234444455555555554333456888899999999999999988 7776655566667787


Q ss_pred             ecCcccccCCCcHHHHHHHHHHhcCeEEE----cCCccC-CCCeEEEEe------eCChHhHHHHHHHHHHHHH
Q 038416          319 KLNVSMLEDIGDDLEFCLKLAKEESVIIL----PGRTVG-MKNWLRIAF------AAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----~g~~~~-~~~~~Ri~~------~~~~e~~~~~~~~l~~~~~  381 (387)
                      ++...+.    + ...+..+|++.||.++    |+.... .+..+||+.      +..++++.++.+.|.++++
T Consensus       348 dl~~~g~----~-g~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l~  416 (470)
T d1rv3a_         348 DLRSKGT----D-GGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE  416 (470)
T ss_dssp             EGGGGTC----C-HHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             eecccCC----c-HHHHHHHHHHcCcEECCCcCCCCCCCCCCCeeEecCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            7754322    3 3456667789999887    443211 146799999      2467888888888888775

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.79  E-value=9.5e-18  Score=156.92  Aligned_cols=316  Identities=14%  Similarity=0.060  Sum_probs=186.9

Q ss_pred             CCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCC-------eEEEcCCCCcchHHHhhcc
Q 038416           45 CYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGA-------NILIPRPGYPLYEIHAAGS  117 (387)
Q Consensus        45 ~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~-------~vl~~~p~~~~~~~~~~~~  117 (387)
                      .|....+..+|++.+++++        ..+.+++++||++|+..++.+++++|+       .++...+.+..+.....  
T Consensus        70 ~y~~~~~~~~le~~~a~l~--------g~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~~~~~--  139 (465)
T d1ax4a_          70 AYAGSRNYYDLKDKAKELF--------NYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVE--  139 (465)
T ss_dssp             CSSSCHHHHHHHHHHHHHH--------CCCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHH--
T ss_pred             hhccChHHHHHHHHHHHHH--------CCCEEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhhHHHHH--
Confidence            5776677789999999998        457899999999999999999875433       34455444444444555  


Q ss_pred             CCCceeeeecc--------CCCCCccCChhhHHHhhcc----CceEEEEeCCCCCc-cccCCHHHHHHHHHHHHhcCcEE
Q 038416          118 NNNLEARHYDL--------LPEKRWEVDLDGVEALADE----NTVAIVIINPGNPC-GNVFSYQHLQKIARTARNLGIIV  184 (387)
Q Consensus       118 ~~g~~~~~~~~--------~~~~~~~~~~~~l~~~~~~----~~~~v~l~~p~npt-G~~~~~~~~~~l~~~~~~~~~~l  184 (387)
                      ..|..+..+..        .....+.+|++++++++++    .+..+++..++|.. |..+|.++++++.++|++||+++
T Consensus       140 ~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l  219 (465)
T d1ax4a_         140 LNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFV  219 (465)
T ss_dssp             HTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCE
T ss_pred             HcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEE
Confidence            56666554422        1223457899999998854    23445555556654 45689999999999999999999


Q ss_pred             eeccccccccc----------CCCCCccc-cccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhh
Q 038416          185 IADEVYNHLAF----------GSTPYVPM-GVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGC  253 (387)
Q Consensus       185 i~D~~~~~~~~----------~~~~~~~~-~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~  253 (387)
                      |+|+++.....          .+...... ..+.. ...+...|.+|.  ..+.+.|+++.++..      .........
T Consensus       220 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~d~~s~s~~k~--~~~~~~g~l~~~~~~------~~~~~~~~~  290 (465)
T d1ax4a_         220 VMDSARFCENAYFIKARDPKYKNATIKEVIFDMYK-YADALTMSAKKD--PLLNIGGLVAIRDNE------EIFTLARQR  290 (465)
T ss_dssp             EEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGG-GCSEEEEETTST--TCCSSCEEEEESSCH------HHHHHHHHH
T ss_pred             EEECcchhhhhcccccccccccccchhhhcccccc-ccceeEeecccC--cccccceeEeecchH------HHHHhhhcc
Confidence            99999863211          01000000 00000 011444455555  556667888887522      222222221


Q ss_pred             h---hc---cCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcc--cc
Q 038416          254 L---NA---ASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVS--ML  325 (387)
Q Consensus       254 ~---~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~--~~  325 (387)
                      .   ..   .+........++...+..   ...+...++..++.+++.+.|+++ ++.++ .+.++..++......  ..
T Consensus       291 ~~~~~~~~~~~~~~~~~~~a~~~~~~e---~~~~~~~~~~~~~~~~l~~~L~~~-g~~~v-~~~~~~~~~~~~~~~~~~~  365 (465)
T d1ax4a_         291 CVPMEGFVTYGGLAGRDMAAMVQGLEE---GTEEEYLHYRIGQVKYLGDRLREA-GIPIQ-YPTGGHAVFVDCKKLVPQI  365 (465)
T ss_dssp             HHHHTCSTTTTTCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHT-TCCBC-SSCCSSEEEEESTTTCTTS
T ss_pred             ccccccCCCcchhhHHHHHHHhhhhHH---hhhHHHHHHHHHHHHHHHHHHHhh-cCccc-cCCCcceeeeehhhhcCCC
Confidence            1   11   112222222222222221   111233444555677788888887 56644 566666666544321  11


Q ss_pred             cCC-CcHHHHHHHHHHhcCeEEEcCCc-------------cCCCCeEEEEee---CChHhHHHHHHHHHHHHHHhh
Q 038416          326 EDI-GDDLEFCLKLAKEESVIILPGRT-------------VGMKNWLRIAFA---AEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       326 ~~~-~~~~~~~~~ll~~~gi~v~~g~~-------------~~~~~~~Ri~~~---~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      +.. .........++.+.||.......             +...+.+|+++.   .++|+++.+++.|+++.++..
T Consensus       366 ~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~~~  441 (465)
T d1ax4a_         366 PGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFA  441 (465)
T ss_dssp             CGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred             ccccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            110 12345566677788987553211             111357999873   489999999999999887654

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.78  E-value=8.3e-17  Score=144.44  Aligned_cols=338  Identities=15%  Similarity=0.055  Sum_probs=209.7

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCC------CCCcHHHHHHHHHHHhhcCCCCCCCCCEEE-cCChHHHHHHHHHhhcCCC
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSP------TLGVPSARRGIADYLNRDLPYKLSPEDVYL-TLGCSQAIEISLSVLARPG   97 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~------~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~-~~g~~~a~~~~~~~l~~~g   97 (387)
                      -+++.+++++...+.+....+|+.      ..-..+++....+...+.|+.......|-+ ..|++.|+.+++.+|++||
T Consensus        38 ~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~all~pg  117 (463)
T d2a7va1          38 FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPH  117 (463)
T ss_dssp             CCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSC
T ss_pred             cCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCccccccHHHHHHHHHHHcCCC
Confidence            588999999999998765544442      223456666656666666664332222222 3557889999999999999


Q ss_pred             CeEEEcCCCCcchHHHh------hccCCC--ceeeeeccCCCCCccCChhhHHHhhcc-CceEEEEeCCCCCccccCCHH
Q 038416           98 ANILIPRPGYPLYEIHA------AGSNNN--LEARHYDLLPEKRWEVDLDGVEALADE-NTVAIVIINPGNPCGNVFSYQ  168 (387)
Q Consensus        98 ~~vl~~~p~~~~~~~~~------~~~~~g--~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~  168 (387)
                      |+|+...+.+.+.....      ..+..|  .+...+.++++ +..+|.+++++.++. ++++|++.....|--  ++  
T Consensus       118 D~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~-~~~IDyd~~~~~a~~~kPklIi~G~S~y~r~--~d--  192 (463)
T d2a7va1         118 DRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPK-TGLIDYNQLALTARLFRPRLIIAGTSAYARL--ID--  192 (463)
T ss_dssp             EECCC-------------------------------CCBCTT-TCSBCHHHHHHHHHHHCCSEEEECCSSCCSC--CC--
T ss_pred             ceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCC-CCcCcHHHHHHHHhhcCCceEEecccccccc--cC--
Confidence            99998776665433221      101223  34555555544 347999999997754 677777655554432  33  


Q ss_pred             HHHHHHHHHHhcCcEEeeccccc-ccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCCCcc------
Q 038416          169 HLQKIARTARNLGIIVIADEVYN-HLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGIL------  241 (387)
Q Consensus       169 ~~~~l~~~~~~~~~~li~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~------  241 (387)
                       ++++.++|.+.|.++++|-+|. ++.-++.-+.|+.. . +   ++.+|.+|.  ++|.|.|.|++.+...-.      
T Consensus       193 -~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~-a-D---vvt~tTHKT--lrGPrgGiIl~~~~~~~~~~~~~~  264 (463)
T d2a7va1         193 -YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-A-D---IVTTTTHKT--LRGARSGLIFYRKGVKAVDPKTGR  264 (463)
T ss_dssp             -HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGT-C-S---EEEEESSGG--GCSCSCEEEEEECSEEEEETTTEE
T ss_pred             -HHHHHHHhhcccceEEechhhhhHHhhhhhhcChhhh-h-h---hhhchhhhh--hcCCCceEEEEcccccccccccCc
Confidence             7888888889999999999998 45555555556533 2 2   888999998  789999999987521000      


Q ss_pred             -cchhHHHHHHhhhh--ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEE
Q 038416          242 -QNSGFVDSIKGCLN--AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMV  318 (387)
Q Consensus       242 -~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~  318 (387)
                       ...++.+++.+...  .-+++.....++.+.++....+..+++..+++.+|++.|.+.|.+. |+.++........+++
T Consensus       265 ~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~-G~~vv~ggTdnHlvlv  343 (463)
T d2a7va1         265 EIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHLVLV  343 (463)
T ss_dssp             EEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEE
T ss_pred             cchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCCCCceeee
Confidence             00134555554321  2234444444444444544334567888899999999999999988 7886655666777788


Q ss_pred             ecCcccccCCCcHHHHHHHHHHhcCeEEE----cCCccC-CCCeEEEEe------eCChHhHHHHHHHHHHHHH
Q 038416          319 KLNVSMLEDIGDDLEFCLKLAKEESVIIL----PGRTVG-MKNWLRIAF------AAEPATLEDGLERIKAFCQ  381 (387)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----~g~~~~-~~~~~Ri~~------~~~~e~~~~~~~~l~~~~~  381 (387)
                      ++.....     +...+...|++.||.++    |+.... .+..+||+.      +..++++.++.+.|.+++.
T Consensus       344 dl~~~~~-----~G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~  412 (463)
T d2a7va1         344 DLRPKGL-----DGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN  412 (463)
T ss_dssp             ECTTTTC-----CHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             eccccCC-----CHHHHHHHHHhccCccCCccCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            8754322     34566667789999988    333211 145799999      2367888888888877764

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.78  E-value=1.8e-17  Score=153.70  Aligned_cols=277  Identities=12%  Similarity=0.098  Sum_probs=176.5

Q ss_pred             CCEEEcCChHHHHHHHHHhhc--CCCCeEEEcCCCCcchHHHhhccCCCceeeeeccCC-CCCccCChhhHHHhhcc---
Q 038416           74 EDVYLTLGCSQAIEISLSVLA--RPGANILIPRPGYPLYEIHAAGSNNNLEARHYDLLP-EKRWEVDLDGVEALADE---  147 (387)
Q Consensus        74 ~~i~~~~g~~~a~~~~~~~l~--~~g~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~~~---  147 (387)
                      ...++..|+++++.+++.+..  .+++.|+++...|.++...+.  ..|+++..++..+ ...+.+|+++|++++++   
T Consensus       131 ~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~--~~g~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~  208 (434)
T d2z67a1         131 HAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVS--FVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIE  208 (434)
T ss_dssp             EEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH--HTTCEEEEECCEEETTEEECCHHHHHHHHHHHHH
T ss_pred             ceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHH--HhCCcceEEEeecCCCccCCCHHHHHHHHHhhhh
Confidence            345556667777777776654  367999999999999999999  8999988876432 33467899999999864   


Q ss_pred             --CceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccc-cCCCCCccccccCCCccEEEEecCcccccc
Q 038416          148 --NTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLA-FGSTPYVPMGVFGSIVPVITLGSISKRWIV  224 (387)
Q Consensus       148 --~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~  224 (387)
                        ++.+|+...|++++|...+   +++|+++|+++|+++++|++|+.+. +.............   .+++.|++|.++.
T Consensus       209 ~~~~~~v~~~~~~~~~g~~~~---l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~~---D~~~~s~hK~l~~  282 (434)
T d2z67a1         209 LGNRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRV---DAVVSSSDKNLLT  282 (434)
T ss_dssp             TTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCC---SEEEEEHHHHHCC
T ss_pred             cCCceEEEeccCcCCCccccC---HHHHHHHHHHhCCeEEEeccchhhhhhccccccccccCCc---ceEEEcCcccccc
Confidence              5777888899999999955   8899999999999999999997532 11111111122222   2778899998654


Q ss_pred             cccceEEEEeeCCCCcccchhHHHHHHhhhhccC-CcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcC--
Q 038416          225 PGWRLGWLVTSDPNGILQNSGFVDSIKGCLNAAS-HPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEI--  301 (387)
Q Consensus       225 ~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--  301 (387)
                      + ...|++..++       .++++++........ ..+....++....   .....+.+..++..++++++.+.|+++  
T Consensus       283 ~-~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~a~l~~---~~~~g~~~~~~~~~~~a~~l~~~L~~l~~  351 (434)
T d2z67a1         283 P-IGGGLVYSTD-------AEFIKEISLSYPGRASATPVVNTLVSLLS---MGSKNYLELVKNQKNSKKLLDELLNDLSK  351 (434)
T ss_dssp             C-SSCEEEEESC-------HHHHHHHHTTSCSCBCSHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CCccccccCc-------HHHHHHHHhhcccccccchHHHHHHHHHH---HHHhcchhHHHHHHHHHHHHHHHHHHhhh
Confidence            3 3356666654       256666655433221 2222222222222   223455666666666777776666653  


Q ss_pred             -CCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEE----cC-------CccCCCCeEEEEee--CChH
Q 038416          302 -PCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIIL----PG-------RTVGMKNWLRIAFA--AEPA  367 (387)
Q Consensus       302 -~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----~g-------~~~~~~~~~Ri~~~--~~~e  367 (387)
                       .+..+...+. ...+.+.+..       +..++...| .+.||...    +.       ..+...+++|++++  .++|
T Consensus       352 ~~g~~ll~~~~-~~~~~~~~~~-------~~~~l~~~L-~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~~s~~~T~e  422 (434)
T d2z67a1         352 KTGGKFLDVES-PIASCISVNS-------DPVEIAAKL-YNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTE  422 (434)
T ss_dssp             HSSCCBCCCCC-SSEEEEECSS-------CHHHHHHHH-HHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHH
T ss_pred             hcCceecCCCC-CceeeeecCC-------CHHHHHHHH-HHcCCeeeehhhhccccCeeeecccCCCeEEEecCCCCCHH
Confidence             2455332233 2233334442       455666655 56687432    11       11223578999984  5899


Q ss_pred             hHHHHHHHHHH
Q 038416          368 TLEDGLERIKA  378 (387)
Q Consensus       368 ~~~~~~~~l~~  378 (387)
                      |++.++++|++
T Consensus       423 dID~~i~~L~k  433 (434)
T d2z67a1         423 DIVNSVSKLEK  433 (434)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999999875

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.76  E-value=1.5e-16  Score=148.58  Aligned_cols=316  Identities=12%  Similarity=0.038  Sum_probs=175.5

Q ss_pred             CcHHHHHHHHHHHhhcCCCCCCCCCEEEc-CChHHHHHHHHHhhcCCCCeEEEcCCCCcchHHHhhccCCCcee--eeec
Q 038416           51 GVPSARRGIADYLNRDLPYKLSPEDVYLT-LGCSQAIEISLSVLARPGANILIPRPGYPLYEIHAAGSNNNLEA--RHYD  127 (387)
Q Consensus        51 ~~~~lr~~ia~~~~~~~~~~~~~~~i~~~-~g~~~a~~~~~~~l~~~g~~vl~~~p~~~~~~~~~~~~~~g~~~--~~~~  127 (387)
                      -..++++.+|++++        .++.+++ +|+++++.+++.+++++||.|+++..+|.+....... ..+..+  ...+
T Consensus        67 ~i~eae~~~A~~~g--------a~~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~~-l~~~~~~~~~~~  137 (462)
T d1c4ka2          67 PAVAAEKHAARVYN--------ADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALA-MAGGRPVYLQTN  137 (462)
T ss_dssp             HHHHHHHHHHHHTT--------CSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTT-TTCCEEEEECEE
T ss_pred             HHHHHHHHHHHHhC--------CCeEEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHHH-HhcCCceeeecc
Confidence            35688999999983        3556555 5556777788888999999999999999987764440 233333  3333


Q ss_pred             cCCCCC-c-----cCChh---------hHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccc
Q 038416          128 LLPEKR-W-----EVDLD---------GVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNH  192 (387)
Q Consensus       128 ~~~~~~-~-----~~~~~---------~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~  192 (387)
                      +++... .     .++.+         .++++...+++.++++..+|-.|.+.+   +++|+++|+++|+++++|++++.
T Consensus       138 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d---l~~I~~ia~~~g~~l~vD~A~~~  214 (462)
T d1c4ka2         138 RNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN---AHEVVKRIGHLCDYIEFDSAWVG  214 (462)
T ss_dssp             ECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC---HHHHHHHHGGGBSEEEEECTTCC
T ss_pred             cccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh---HHHHHHHHHHcCCEEEEechhhc
Confidence            332210 1     12222         233344456666666666677999977   88999999999999999999985


Q ss_pred             ccc-CCCCCccccccC-----CCccEEEEecCcccccccccceEEEEeeCCCCcccchh--HHHHHHhhh--hccCCcch
Q 038416          193 LAF-GSTPYVPMGVFG-----SIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSG--FVDSIKGCL--NAASHPVT  262 (387)
Q Consensus       193 ~~~-~~~~~~~~~~~~-----~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~  262 (387)
                      ... .+..........     .....+++.|++|.++.++  .|.++..+...+.....  -.+.+++..  ..+.+++.
T Consensus       215 ~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~--~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~  292 (462)
T d1c4ka2         215 YEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFY  292 (462)
T ss_dssp             GGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT--TCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCH
T ss_pred             cccccCcCCcchhhccccccccCCccEEEEecCccccccc--ceEEEEeccccccccchhhhHHHHHHhhhhcccCCchH
Confidence            332 211111111111     1123588999999976544  35555443221110000  011222221  12344555


Q ss_pred             HHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC---------------------------------
Q 038416          263 FIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVK---------------------------------  309 (387)
Q Consensus       263 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---------------------------------  309 (387)
                      .....+..+..........+..++..++.+.+++.+.++++......                                 
T Consensus       293 ~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (462)
T d1c4ka2         293 PMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWH  372 (462)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTT
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhcccchhccCCcchhc
Confidence            54444444443323344455556666667777777666433210000                                 


Q ss_pred             -----CCceEE-----EEEecCccc-----ccC-CCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHH
Q 038416          310 -----PQGAMF-----VMVKLNVSM-----LED-IGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLED  371 (387)
Q Consensus       310 -----~~~g~~-----~~~~~~~~~-----~~~-~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~  371 (387)
                           ......     +.+..+...     ... .....++ ...++++||.+...    ....+|+.++  .+++++++
T Consensus       373 ~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~-~~~L~~~gI~~e~~----~~~~i~~~~s~~~T~edid~  447 (462)
T d1c4ka2         373 AYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIV-ANYLRDHGIIPEKS----DLNSILFLMTPAETPAKMNN  447 (462)
T ss_dssp             CCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHH-HHHHHHTTCCCSEE----CSSEEEEECCTTCCHHHHHH
T ss_pred             cccccCccceecccceeEEecCCccccccchhhcCCcHHHH-HHHHHHcCCeeecc----CCCeEEEEecCCCCHHHHHH
Confidence                 000000     112111100     000 0123344 44557889865322    2467899984  58999999


Q ss_pred             HHHHHHHHHHHhhh
Q 038416          372 GLERIKAFCQRHAK  385 (387)
Q Consensus       372 ~~~~l~~~~~~~~~  385 (387)
                      +++.|++..+.+..
T Consensus       448 li~aL~ei~r~~~~  461 (462)
T d1c4ka2         448 LITQLLQLQRLIEE  461 (462)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999998877653

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=99.74  E-value=4.7e-16  Score=143.33  Aligned_cols=336  Identities=13%  Similarity=0.040  Sum_probs=195.0

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc--CCCCeEEEc
Q 038416           26 DSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA--RPGANILIP  103 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~g~~vl~~  103 (387)
                      .+|.+.+|+++++.......  . ....+.+..+++.+.+...  -.-+.+++++++++|++.+++...  ...++|+..
T Consensus        58 ~~p~v~~ai~~q~~~~~~~~--~-~~~~~~~~~la~~L~~~~~--~~~~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~~~  132 (431)
T d1zoda1          58 CHPEIVSVIGEYAGKLDHLF--S-EMLSRPVVDLATRLANITP--PGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGF  132 (431)
T ss_dssp             TCHHHHHHHHHHHHHCCCCC--T-TCCCHHHHHHHHHHHHHSC--TTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCHHHHHHHHHHHhhccccc--c-ccccHHHHHHHHHHHHhCC--cccceeeecccccchHHHHHHHHHHhcCCcceeec
Confidence            67999999999988642211  1 1112334455555544332  234789999999999999999853  334788888


Q ss_pred             CCCCcchHHHhhccCCCc-----------eeeeeccCCCC-------CccCChhhHHH---hh---ccCceEEEEeCC-C
Q 038416          104 RPGYPLYEIHAAGSNNNL-----------EARHYDLLPEK-------RWEVDLDGVEA---LA---DENTVAIVIINP-G  158 (387)
Q Consensus       104 ~p~~~~~~~~~~~~~~g~-----------~~~~~~~~~~~-------~~~~~~~~l~~---~~---~~~~~~v~l~~p-~  158 (387)
                      ...|++...... +..+.           ....++.....       ....+.++++.   .+   .++..+.++..| +
T Consensus       133 ~~~yHG~t~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~  211 (431)
T d1zoda1         133 AQSWHGMTGAAA-SATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPIL  211 (431)
T ss_dssp             TTCCCCSSHHHH-HTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEE
T ss_pred             ccccccccchhh-cccccccccccCCcccCceeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeecccc
Confidence            888887543333 01111           11111111000       00111222222   22   234566677777 4


Q ss_pred             CCccc-cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCC
Q 038416          159 NPCGN-VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDP  237 (387)
Q Consensus       159 nptG~-~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~  237 (387)
                      ...|. .+|++.+++|.++|++||+++|.||++.++...|..+.. ..++-...   +.+++|.+ ..|+.++.+++.+ 
T Consensus       212 g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~-~~~gv~PD---i~~~gK~l-~gG~p~~av~~~~-  285 (431)
T d1zoda1         212 SSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFAC-QRDGVTPD---ILTLSKTL-GAGLPLAAIVTSA-  285 (431)
T ss_dssp             TTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTH-HHHTCCCS---EEEECHHH-HTTSSCEEEEECH-
T ss_pred             ccCCccCCCHHHHHHHHHHHHhcCceEEecccccccccccccccc-ccCCCCcc---hhcccccc-ccccccceeeeee-
Confidence            44555 468888999999999999999999999997766653332 12222222   33567995 5667888888765 


Q ss_pred             CCcccchhHHHHHHhhh---hccCCcchHHHHHHHHHhhhccHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCce
Q 038416          238 NGILQNSGFVDSIKGCL---NAASHPVTFIQAAVPRIVDETNEA-FFAKIIGLLKETADICYERIKEIPCITCPVKPQGA  313 (387)
Q Consensus       238 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g  313 (387)
                             +..+......   ..+++.++++.+++.+.++...++ .+++..+.-.+..+.+.+.+++.+-+..+  ...|
T Consensus       286 -------~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~i~~v--rG~G  356 (431)
T d1zoda1         286 -------AIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDV--RGRG  356 (431)
T ss_dssp             -------HHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE--EEET
T ss_pred             -------cchhhhhcccccccCCCCCCcchHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhhhcCCCeEEE--eecc
Confidence                   4555444321   245678888888888777654433 33333344444555555555555433312  2335


Q ss_pred             EEEEEecCcc---cccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHh
Q 038416          314 MFVMVKLNVS---MLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       314 ~~~~~~~~~~---~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                      .++.+.+...   ..+.......+..++ .++|+....-.....++.+|+++.  ++++++++++++|.+++++.
T Consensus       357 lm~~ie~~~~~~~~~~~~~~~~~i~~~~-~~~Gl~~~~~~~~~~~~~i~l~Ppl~it~~eid~~~~~l~~al~~v  430 (431)
T d1zoda1         357 LLLGVEIVKDRRTKEPADGLGAKITREC-MNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA  430 (431)
T ss_dssp             TEEEEEEEEETTTTEECTTHHHHHHHHH-HHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEecCCcccCccHHHHHHHHHHH-HHhCcccCeeeecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            4554544221   111111123444544 566875321111113578999984  68999999999999999875

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.73  E-value=9.3e-16  Score=138.85  Aligned_cols=312  Identities=11%  Similarity=0.083  Sum_probs=202.4

Q ss_pred             CCcHHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc-CCC--CeEE
Q 038416           25 SDSTVAEDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA-RPG--ANIL  101 (387)
Q Consensus        25 ~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~g--~~vl  101 (387)
                      ...++-.+++.+.++.+.+   .......++++.+++++        +..++++++|+|.|+.++++++- ++|  +.|+
T Consensus         9 ~~~~~~~~~v~~~l~~~~~---~~G~~v~~fE~~~~~~~--------g~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi   77 (371)
T d2fnua1           9 CLDKEDKKAVLEVLNSKQL---TQGKRSLLFEEALCEFL--------GVKHALVFNSATSALLTLYRNFSEFSADRNEII   77 (371)
T ss_dssp             CCCHHHHHHHHHHHTSSCC---SSSHHHHHHHHHHHHHH--------TCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEE
T ss_pred             CCCHHHHHHHHHHHcCCCc---cCCHHHHHHHHHHHHHH--------CcCeEEEEecHHHHHHHHHHHhcccCCCCCeee
Confidence            3456667888898876533   22234688999999999        34578999999999999999984 444  5899


Q ss_pred             EcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcC
Q 038416          102 IPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLG  181 (387)
Q Consensus       102 ~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~  181 (387)
                      ++..+|......+.  ..|++++.++++++.  ..+.+.+++.+.+++++|++++   ..|...+   +.++.++|++++
T Consensus        78 ~p~~t~~a~~~ai~--~~G~~pv~vDi~~~~--~~~~~~~~~~~~~~t~avi~vh---~~G~~~~---~~~i~~~~~~~~  147 (371)
T d2fnua1          78 TTPISFVATANMLL--ESGYTPVFAGIKNDG--NIDELALEKLINERTKAIVSVD---YAGKSVE---VESVQKLCKKHS  147 (371)
T ss_dssp             ECSSSCTHHHHHHH--HTTCEEEECCBCTTS--SBCGGGSGGGCCTTEEEEEEEC---GGGCCCC---HHHHHHHHHHHT
T ss_pred             cccccccccceeee--ccCcccccccccccc--cccchhhhhhccchhhcccccc---ccccccc---cccccccccccc
Confidence            99999999888888  999999999987543  3566788888899999998775   4577655   788889999999


Q ss_pred             cEEeecccccccc-cCCCCCccccccCCCccEEEEecC--cccccccccceEEEEeeCCCCcccchhHHHHHHhhhhc--
Q 038416          182 IIVIADEVYNHLA-FGSTPYVPMGVFGSIVPVITLGSI--SKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNA--  256 (387)
Q Consensus       182 ~~li~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~s~--sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~--  256 (387)
                      +++|+|.+++... +.+..   ...++    .+.+.||  +|.+...  ..|.+++++       +++.+.++..+..  
T Consensus       148 i~lIEDaaqa~Ga~~~~~~---~G~~g----~~~~~Sf~~~K~l~~g--~GG~i~t~~-------~~~~~~~~~~~~~g~  211 (371)
T d2fnua1         148 LSFLSDSSHALGSEYQNKK---VGGFA----LASVFSFHAIKPITTA--EGGAVVTND-------SELHEKMKLFRSHGM  211 (371)
T ss_dssp             CEEEEECTTCTTCEETTEE---TTSSS----SEEEEECCTTSSSCCS--SCEEEEESC-------HHHHHHHHHHTBTTE
T ss_pred             hhhccchhhccCceecccc---CCccc----cccccccccccccccc--cceEEEeec-------hhhhhhccccccccc
Confidence            9999999999633 22221   11122    1445555  6775433  357777765       3577777654321  


Q ss_pred             ---------------cCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC---CceE-EEE
Q 038416          257 ---------------ASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKP---QGAM-FVM  317 (387)
Q Consensus       257 ---------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~g~-~~~  317 (387)
                                     .+.++.+..+.+..-|+.     +++..++-+++++.+.+.|.+++++.....+   ...+ .+.
T Consensus       212 ~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~~-----l~~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~  286 (371)
T d2fnua1         212 LKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKK-----APFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYP  286 (371)
T ss_dssp             EESSSSCEEESSCCCBCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEE
T ss_pred             ccccccccccccccccccccchhhhhhhhhhhh-----ccchhhhhhhhhhhhccccccccccccccccccccccccccc
Confidence                           112333333333333332     5566666666777777888877655422111   1111 122


Q ss_pred             EecCcccccCCCcHHHHHHHHHHhcCeEEEcCCcc-----------CC----------CCeEEEEe--eCChHhHHHHHH
Q 038416          318 VKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTV-----------GM----------KNWLRIAF--AAEPATLEDGLE  374 (387)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~-----------~~----------~~~~Ri~~--~~~~e~~~~~~~  374 (387)
                      +.+.....   ..-.++...| +++||.+.+....           ..          ...+.+-+  ..++++++..++
T Consensus       287 i~~~~~~~---~~r~~~~~~L-~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~  362 (371)
T d2fnua1         287 ILMHQKFF---TCKKLILESL-HKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAH  362 (371)
T ss_dssp             EEECGGGG---GGHHHHHHHH-HHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHH
T ss_pred             ccccccch---hHHHHHHHHH-HHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHH
Confidence            22332110   1223455555 7779988765321           01          12354444  358899999999


Q ss_pred             HHHHHHHH
Q 038416          375 RIKAFCQR  382 (387)
Q Consensus       375 ~l~~~~~~  382 (387)
                      .|.+.+++
T Consensus       363 ~i~~~~~~  370 (371)
T d2fnua1         363 SVLKTFES  370 (371)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            99988875

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=1.8e-16  Score=148.05  Aligned_cols=318  Identities=14%  Similarity=0.067  Sum_probs=182.0

Q ss_pred             CCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhcCCCCe---------EEEcCCCCcchHHHhh
Q 038416           45 CYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLARPGAN---------ILIPRPGYPLYEIHAA  115 (387)
Q Consensus        45 ~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g~~---------vl~~~p~~~~~~~~~~  115 (387)
                      .|+......+|++.+++++        ..+.++++++|++|+..++.+++++|+.         ++.....|........
T Consensus        69 ~Y~~~~~~~~le~~~a~l~--------G~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~  140 (467)
T d2v1pa1          69 AFSGSRSYYALAESVKNIF--------GYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQ  140 (467)
T ss_dssp             CSSSCHHHHHHHHHHHHHT--------CCSEEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHH
T ss_pred             hhcCCchHHHHHHHHHHHH--------CCCEEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccHHHHH
Confidence            4666667789999999998        4568899999999999999998766543         3333433444445555


Q ss_pred             ccCCCceeeeeccCCC--------CCccCChhhHHHhhcc----CceEEEEeCCCC-CccccCCHHHHHHHHHHHHhcCc
Q 038416          116 GSNNNLEARHYDLLPE--------KRWEVDLDGVEALADE----NTVAIVIINPGN-PCGNVFSYQHLQKIARTARNLGI  182 (387)
Q Consensus       116 ~~~~g~~~~~~~~~~~--------~~~~~~~~~l~~~~~~----~~~~v~l~~p~n-ptG~~~~~~~~~~l~~~~~~~~~  182 (387)
                        ..|..+..++.+..        ....+|++++++.+++    .+.++++.+.+| ..|..++.++++++.++|++||+
T Consensus       141 --~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~  218 (467)
T d2v1pa1         141 --INGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDI  218 (467)
T ss_dssp             --HTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTC
T ss_pred             --HcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCC
Confidence              67888877665421        1346789999998853    356667777766 45778899999999999999999


Q ss_pred             EEeecccccccc----------cCCCCCccc-cccCCCccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHH
Q 038416          183 IVIADEVYNHLA----------FGSTPYVPM-GVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIK  251 (387)
Q Consensus       183 ~li~D~~~~~~~----------~~~~~~~~~-~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~  251 (387)
                      ++|+|+++....          +.+...... ..+.. ...++..|.+|.++  +...|+++.++ ..+.   ......+
T Consensus       219 ~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~d~~s~s~~K~~~--~~~gg~i~~~~-~~~~---~~~~~~~  291 (467)
T d2v1pa1         219 PVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYK-YADMLAMSAKKDAM--VPMGGLLCMKD-DSFF---DVYTECR  291 (467)
T ss_dssp             CEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGG-GCSEEEEESSSTTC--CSSCEEEEECS-GGGH---HHHHHHH
T ss_pred             EEEEechhhhccccccccccccccCCcccccchhhcc-cCCEEEecCCCCCC--CCCceeEEecc-hhhh---hHHHhhc
Confidence            999999986311          111111110 00111 11255567788754  33356666654 1111   1122222


Q ss_pred             hhh---h---ccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEe--cCcc
Q 038416          252 GCL---N---AASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVK--LNVS  323 (387)
Q Consensus       252 ~~~---~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~--~~~~  323 (387)
                      ...   .   ...........++...+...   ...+..++..++.+++.+.|++. ++.+........+....  ++..
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~-~~~v~~~~~~~~~~~~~~~~~~~  367 (467)
T d2v1pa1         292 TLCVVQEGFPTYGGLEGGAMERLAVGLYDG---MNLDWLAYRIAQVQYLVDGLEEI-GVVCQQAGGHAAFVDAGKLLPHI  367 (467)
T ss_dssp             HHHHHTTSSCCCCCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHHT-TCCEEEECSSCEEEEHHHHSTTS
T ss_pred             ccccccccCcchhhhHHHHHHHHHHHhHHh---hhHHHHHHHHHHHHHHHHHHHhc-CCcccCCCccceeecchhhcCCc
Confidence            221   1   11122222333333222221   11234444556777788888876 33312111112222111  1111


Q ss_pred             cccCCCcHHHHHHHHHHhcCeEEEcCCc-------------cCCCCeEEEEee---CChHhHHHHHHHHHHHHHHhh
Q 038416          324 MLEDIGDDLEFCLKLAKEESVIILPGRT-------------VGMKNWLRIAFA---AEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       324 ~~~~~~~~~~~~~~ll~~~gi~v~~g~~-------------~~~~~~~Ri~~~---~~~e~~~~~~~~l~~~~~~~~  384 (387)
                      .... .........++.+.||.......             +.....+|+++.   .++|+++.+++.|+++.++..
T Consensus       368 ~~~~-~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~~~~  443 (467)
T d2v1pa1         368 PADQ-FPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAA  443 (467)
T ss_dssp             CGGG-CHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred             chhh-hhhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            1111 12345566777888986432211             111457999874   388999999999999886543

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.71  E-value=1.8e-15  Score=137.18  Aligned_cols=309  Identities=11%  Similarity=0.041  Sum_probs=190.5

Q ss_pred             HHHHHHHhcCCCCCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh-cCCCCeEEEcCCCCcc
Q 038416           31 EDAVVDALRTAHYNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL-ARPGANILIPRPGYPL  109 (387)
Q Consensus        31 ~~a~~~~~~~~~~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~g~~vl~~~p~~~~  109 (387)
                      ++++.+.++.+...+.++  ....+++.+++++        ....+++++|+|.|+.+++.++ +++||+|++|..+|..
T Consensus         4 ~~~~~~~l~~~~~~~~G~--~~~~fE~~~~~~~--------~~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a   73 (374)
T d1o69a_           4 LKYIEEVFKSNYIAPLGE--FVNRFEQSVKDYS--------KSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIA   73 (374)
T ss_dssp             HHHHHHHHHHTTTSCTTH--HHHHHHHHHHHHH--------CCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGG
T ss_pred             HHHHHHHHhcCCcCCCCH--HHHHHHHHHHHHH--------CcCeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHh
Confidence            466777777654433343  3588999999999        3458999999999999999998 7899999999999999


Q ss_pred             hHHHhhccCCCceeeeeccCCCCCccCChh--hHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeec
Q 038416          110 YEIHAAGSNNNLEARHYDLLPEKRWEVDLD--GVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIAD  187 (387)
Q Consensus       110 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D  187 (387)
                      ....+.  ..|++++.+++++.. ...+.+  .+.....++++++++++.   .|....   +.++.++|+++|++||+|
T Consensus        74 ~~~~~~--~~g~~pv~~Di~~~~-~~~~~~~~~~~~~~~~~~~aii~~~~---~G~~~d---~~~i~~~~~~~~i~vIED  144 (374)
T d1o69a_          74 SVAPIC--YLKAKPVFIDCDETY-NIDVDLLKLAIKECEKKPKALILTHL---YGNAAK---MDEIVEICKENDIVLIED  144 (374)
T ss_dssp             GTHHHH--HTTCEEEEECBCTTS-SBCHHHHHHHHHHCSSCCCEEEEECG---GGCCCC---HHHHHHHHHHTTCEEEEE
T ss_pred             hHHHHh--hccceeEeccccccc-ccccccccccchhccccccccccccc---ccchhh---hHHHHHHhhccCcchhhh
Confidence            888888  999999999986432 223333  333456678889987765   455544   889999999999999999


Q ss_pred             ccccccc-cCCCCCccccccCCCccEEEEecCc--ccccccccceEEEEeeCCCCcccchhHHHHHHhhhhc--------
Q 038416          188 EVYNHLA-FGSTPYVPMGVFGSIVPVITLGSIS--KRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGCLNA--------  256 (387)
Q Consensus       188 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~s~s--K~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~~~~--------  256 (387)
                      .+++... +.+..   +..+.    .+.+.||.  |.++..|  .|.+++.+       .++.++++.....        
T Consensus       145 ~a~a~g~~~~~~~---~G~~g----d~~~fSf~~~K~l~tge--GG~i~tnn-------~~~~~~~~~~~~~g~~~~~~~  208 (374)
T d1o69a_         145 AAEALGSFYKNKA---LGTFG----EFGVYSYNGNKIITTSG--GGMLIGKN-------KEKIEKARFYSTQARENCLHY  208 (374)
T ss_dssp             CTTCTTCEETTEE---TTSSS----SEEEEECCTTSSSCCSS--CEEEEESC-------HHHHHHHHHHTBTCCCSSSSC
T ss_pred             hhhhhcceECCee---cCCCC----ceEEEeccCcccccccc--ceeehhhh-------HHHHHhhcccccccccccccc
Confidence            9999633 33322   22222    26666776  6654333  57777765       3566666654321        


Q ss_pred             -------cCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC-----ceEEEEEecCccc
Q 038416          257 -------ASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQ-----GAMFVMVKLNVSM  324 (387)
Q Consensus       257 -------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~g~~~~~~~~~~~  324 (387)
                             .+.++.+..+....-|+.     +++..++-+++++++.+.|.+...+. ...+.     .-++..+..+...
T Consensus       209 ~~~~~G~N~rm~ei~Aaig~~qL~~-----l~~~i~~r~~i~~~y~~~L~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~  282 (374)
T d1o69a_         209 EHLDYGYNYRLSNVLGAIGVAQMEV-----LEQRVLKKREIYEWYKEFLGEYFSFL-DELENSRSNRWLSTALINFDKNE  282 (374)
T ss_dssp             CCSSCCCBCBCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHTTTEECC-CCCTTEECCCSSEEEEESCCGGG
T ss_pred             ccccCCccccccchhhhhhHHHHhh-----hhhhcchhHHHHHHHHhhcccccccc-ccccCCCCChhheeeeecccccc
Confidence                   112333333333333332     45555555666677777776642221 10111     1112222222110


Q ss_pred             c--------------cCCCcHHHHHHHHHHhcCeEEEcCCccC-------C-------------CCeEEEEe--eCChHh
Q 038416          325 L--------------EDIGDDLEFCLKLAKEESVIILPGRTVG-------M-------------KNWLRIAF--AAEPAT  368 (387)
Q Consensus       325 ~--------------~~~~~~~~~~~~ll~~~gi~v~~g~~~~-------~-------------~~~~Ri~~--~~~~e~  368 (387)
                      .              .-.....++...| ++.||.+.+....-       .             ...+.+-+  ..+++|
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~r~~l~~~L-~~~gI~~r~~y~pl~~~~~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~d  361 (374)
T d1o69a_         283 LNACQKDINISQKNITLHPKISKLIEDL-KNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDD  361 (374)
T ss_dssp             SCCCCEEEECCCCCCCCCHHHHHHHHHH-HHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHH
T ss_pred             ccccccccccchhhccchhhHHHHHHHH-HHCCCCEEEeCcchhhChhhhcCCCCCCHHHHHHHhCEEECcCCCCCCHHH
Confidence            0              0001223455544 77799887643210       0             12344433  358999


Q ss_pred             HHHHHHHHHHHHH
Q 038416          369 LEDGLERIKAFCQ  381 (387)
Q Consensus       369 ~~~~~~~l~~~~~  381 (387)
                      ++..++.|.++++
T Consensus       362 i~~I~~~I~~~lk  374 (374)
T d1o69a_         362 VYEISKLILKSIK  374 (374)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHC
Confidence            9999999988763

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.70  E-value=2.2e-16  Score=142.60  Aligned_cols=335  Identities=10%  Similarity=-0.010  Sum_probs=181.0

Q ss_pred             ccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCC--------CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCC
Q 038416           10 RHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAH--------YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLG   81 (387)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~--------~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g   81 (387)
                      ..|++||..      ..|+.|+++|.+.+.+-.        .+|.+  ....++-+.+.+.++..++.+ +...|++++|
T Consensus         4 ~~~F~pGP~------~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs--~ef~~~~~~~r~~l~~l~~~~-~~~~i~~~~g   74 (361)
T d2c0ra1           4 AYNFNAGPA------ALPLEVLERAQAEFVDYQHTGMSIMEMSHRG--AVYEAVHNEAQARLLALLGNP-TGYKVLFIQG   74 (361)
T ss_dssp             CEECCSSSC------CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTS--HHHHHHHHHHHHHHHHHTTCC-SSEEEEEESS
T ss_pred             CcccCCCCc------CCCHHHHHHHHHHHhhhcccCccccccCcCC--HHHHHHHHHHHHHHHHHhCCC-CCCEEEEECC
Confidence            345667633      789999999999875411        11222  122344444444444444422 2336777666


Q ss_pred             h-HHHHHHHHHhhcCCCCeEEEcCCCCc--chHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCC
Q 038416           82 C-SQAIEISLSVLARPGANILIPRPGYP--LYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPG  158 (387)
Q Consensus        82 ~-~~a~~~~~~~l~~~g~~vl~~~p~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~  158 (387)
                      + +.++.++...+..+|+++++.....+  .+...+.  ..|..+..+..+.  +...+++.+++.+..++. +.   .+
T Consensus        75 s~t~~~ea~~~~l~~~~~~~l~~~~g~~~~~~~~~~~--~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~---v~  146 (361)
T d2c0ra1          75 GASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAK--LIGDTHVAASSEA--SNYMTLPKLQEIQLQDNA-AY---LH  146 (361)
T ss_dssp             HHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHH--HHSCEEEEEECGG--GTTCSCCCGGGCCCCTTE-EE---EE
T ss_pred             CchHHHHHHHhccccCCCceEEEeechhhhhhhhhhh--hcCceeeeecccc--ccccchhhhhhhcccCcc-eE---EE
Confidence            5 55556777777888888876654443  3456666  7788877776543  235677777777665553 22   24


Q ss_pred             CCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEeeCCC
Q 038416          159 NPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTSDPN  238 (387)
Q Consensus       159 nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~  238 (387)
                      |.||...+   +.++.++|+++|+++++|.+++.    +..+..+..++     +.+.|.+|.++++|....++......
T Consensus       147 ~~tg~~~~---~~~i~~~~~~~~al~~vDavss~----g~~~id~~~~d-----i~~~s~~k~~~~~~~~~~~~~~~~~~  214 (361)
T d2c0ra1         147 LTSNETIE---GAQFKAFPDTGSVPLIGDMSSDI----LSRPFDLNQFG-----LVYAGAQKNLGPSGVTVVIVREDLVA  214 (361)
T ss_dssp             EESEETTT---TEECSSCCCCTTSCEEEECTTTT----TSSCCCGGGCS-----EEEEETTTTTCCSSCEEEEEEGGGSS
T ss_pred             Eeccccee---cceEEEeeccCCceEEEEeeccc----cccccccccce-----eEEEecccccccccCcEEEEEhHHhh
Confidence            56788876   56677889999999999999985    22223333322     55667899988776433333322111


Q ss_pred             Cccc----chhHHHHHHhhhhccCCcchHHHHHHHHHhhh-ccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-CCCCC-
Q 038416          239 GILQ----NSGFVDSIKGCLNAASHPVTFIQAAVPRIVDE-TNEAFFAKIIGLLKETADICYERIKEIPCITC-PVKPQ-  311 (387)
Q Consensus       239 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~-  311 (387)
                      ....    ...+.. .........++.+.....+...... ...........+.++.+..+............ ...+. 
T Consensus       215 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (361)
T d2c0ra1         215 ESPKHLPTMLRYDT-YVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDS  293 (361)
T ss_dssp             SCCTTSCGGGCHHH-HHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGG
T ss_pred             hCcccccccccccc-ccccccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhh
Confidence            0000    011221 2222222222222222222211111 11122233334444444444444443211111 11121 


Q ss_pred             -ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHH
Q 038416          312 -GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       312 -~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~  382 (387)
                       +.....+.++..     .+..++. ..|+++||.+.+|....  +.|||++.  .+.||++++++.|++..++
T Consensus       294 rS~~~~~~~~~~~-----~~~~~~~-~~L~~~GI~~~~G~~~~--g~~RIs~~~~~~~edv~~Lv~~l~~~~~~  359 (361)
T d2c0ra1         294 RSDMNITFRLASE-----ELEKEFV-KASEQEGFVGLKGHRSV--GGLRASIYNAVPYESCEALVQFMEHFKRS  359 (361)
T ss_dssp             BCSSEEEEECSCH-----HHHHHHH-HHHHHTTEESCBCCTTT--CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             ccceEEEEECCCc-----ccHHHHH-HHHHHCCCEEecCCCcC--CeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence             112334444431     1334444 45588899998885332  34999994  5899999999999987765

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.70  E-value=1.2e-15  Score=141.31  Aligned_cols=324  Identities=12%  Similarity=0.024  Sum_probs=182.9

Q ss_pred             CcHHHHHHHHHHhcCCC---CCCCCCCCCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc--------
Q 038416           26 DSTVAEDAVVDALRTAH---YNCYSPTLGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA--------   94 (387)
Q Consensus        26 ~~~~v~~a~~~~~~~~~---~~~y~~~~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--------   94 (387)
                      .+|.|.+++++++....   ...+.. .....+.+.+++.+....+  ..-+.+++++++++|++.+++...        
T Consensus        70 ~~p~v~~ai~~q~~~~~~~~~~~~~~-~~~~~~a~~lae~l~~~~~--~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~  146 (461)
T d1ohwa_          70 SHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAP--KGMSQLITMACGSCSNENAFKTIFMWYRSKER  146 (461)
T ss_dssp             TCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCC--TTCCEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHhhhhhcccccccc-cchHHHHHHHHHHHHhhhc--cCcceeeeecchhhhhHHHHHHHHHHhhhccc
Confidence            46788999988776421   111111 1223455666766644322  245689999999999999987642        


Q ss_pred             --------------------CCCCeEEEcCCCCcchHHHhhccCCCce-------------eeeeccCCCCC-c------
Q 038416           95 --------------------RPGANILIPRPGYPLYEIHAAGSNNNLE-------------ARHYDLLPEKR-W------  134 (387)
Q Consensus        95 --------------------~~g~~vl~~~p~~~~~~~~~~~~~~g~~-------------~~~~~~~~~~~-~------  134 (387)
                                          .+..+|+....+|++....+. +..|-+             ....+...... .      
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~-s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (461)
T d1ohwa_         147 GQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCL-ATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQ  225 (461)
T ss_dssp             TTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHH-HTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHHHH
T ss_pred             CcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccc-cccCCcccccccccccCCcccccccccccccccccccc
Confidence                                123478988999987433222 022211             11100000000 0      


Q ss_pred             ---cCChhhHHHhhc-----cCceEEEEeCC-CCCccc-cCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcccc
Q 038416          135 ---EVDLDGVEALAD-----ENTVAIVIINP-GNPCGN-VFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMG  204 (387)
Q Consensus       135 ---~~~~~~l~~~~~-----~~~~~v~l~~p-~nptG~-~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~  204 (387)
                         ..+.+.+++.+.     ++..+.++..| +...|. .+|++.+++|.++|++||+++|+||++.++...|..+. ..
T Consensus       226 ~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~-~e  304 (461)
T d1ohwa_         226 QEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWA-HE  304 (461)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSG-GG
T ss_pred             hhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceecccccccccccccccc-cc
Confidence               012334444432     24455566666 555565 47788899999999999999999999999876665333 22


Q ss_pred             ccCC--CccEEEEecCcccccccccceEEEEeeCCCCcccchhHHHHHHhh-hhccCCcchHHHHHHHHHhhhccHHHH-
Q 038416          205 VFGS--IVPVITLGSISKRWIVPGWRLGWLVTSDPNGILQNSGFVDSIKGC-LNAASHPVTFIQAAVPRIVDETNEAFF-  280 (387)
Q Consensus       205 ~~~~--~~~~~~i~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~-  280 (387)
                      .+..  ...++   +++|.++  |   |+.....         ........ ...++..++++.+++.+.|+...++.+ 
T Consensus       305 ~~gi~~~PDiv---~~gK~l~--~---g~~~~~~---------~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l~  367 (461)
T d1ohwa_         305 HWGLDDPADVM---TFSKKMM--T---GGFFHKE---------EFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLL  367 (461)
T ss_dssp             GGCCSSCCSEE---EECGGGS--S---EEEEECG---------GGSCSSTTSSCCSCSSCHHHHHHHHHHHHHHHHTTHH
T ss_pred             ccccccCchhh---hhhhccc--c---ccccccc---------ccccccccccccccccccccchhhcccchhhhhhhHH
Confidence            2221  12233   5779843  2   3443322         11111111 124567788888888887776443322 


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEE
Q 038416          281 AKIIGLLKETADICYERIKEIPCITCPVKPQGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRI  360 (387)
Q Consensus       281 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri  360 (387)
                      ++..+.-....+.+.+...+.|.+. ......|.++-+.++...     ...++...+ .++|+.+.+..    ++.+|+
T Consensus       368 ~~~~~~g~~l~~~l~~l~~~~~~~i-~~vrG~Gl~~~ie~~~~~-----~~~~i~~~~-~~~Gll~~~~~----~~~ir~  436 (461)
T d1ohwa_         368 SNAAHAGKVLLTGLLDLQARYPQFI-SRVRGRGTFCSFDTPDES-----IRNKLISIA-RNKGVMLGGCG----DKSIRF  436 (461)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTTC-EEEEEETTEEEEECSSHH-----HHHHHHHHH-HHTTEECEEET----TTEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCce-EEeeeeeEEEEEEcCCHH-----HHHHHHHHH-HHCCeEEeeCC----CCEEEE
Confidence            2222222223333333333344321 101234666667775421     123455554 56799987742    578999


Q ss_pred             Eee--CChHhHHHHHHHHHHHHHH
Q 038416          361 AFA--AEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       361 ~~~--~~~e~~~~~~~~l~~~~~~  382 (387)
                      .+.  .++++++.++++|.+++++
T Consensus       437 ~PpL~it~~eid~~~~~l~~~l~e  460 (461)
T d1ohwa_         437 RPTLVFRDHHAHLFLNIFSDILAD  460 (461)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             eCCcCCCHHHHHHHHHHHHHHHhc
Confidence            874  6899999999999999876

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=8.1e-16  Score=138.61  Aligned_cols=335  Identities=12%  Similarity=-0.051  Sum_probs=184.0

Q ss_pred             ccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCC--------CCCCC--CCCcHHHHHHHHHHHhhcCCCCCC-CCCEEE
Q 038416           10 RHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAHY--------NCYSP--TLGVPSARRGIADYLNRDLPYKLS-PEDVYL   78 (387)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~--------~~y~~--~~~~~~lr~~ia~~~~~~~~~~~~-~~~i~~   78 (387)
                      +.|++||..      ..|+.|+++|.+.+.+-..        ++.++  ..-..+.|+.++++++      ++ .+.|++
T Consensus         2 ~~nF~pGP~------~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~------~~~~~~v~~   69 (360)
T d1bjna_           2 IFNFSSGPA------MLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLN------VPSNYKVLF   69 (360)
T ss_dssp             CEECCSSSC------CCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHT------CCTTEEEEE
T ss_pred             eEEeCCCCc------CCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhC------CCCCCEEEE
Confidence            456778743      7899999999998764211        12111  1124566777777773      33 346788


Q ss_pred             cCChHHHHHHHH-HhhcCCCCeEEEcCCCCcc--hHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEe
Q 038416           79 TLGCSQAIEISL-SVLARPGANILIPRPGYPL--YEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVII  155 (387)
Q Consensus        79 ~~g~~~a~~~~~-~~l~~~g~~vl~~~p~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~  155 (387)
                      ++|++++...++ ..+..+++.+++....+..  +....+  ..+...........  ...+.+.+++.+..+++++.++
T Consensus        70 ~~gs~t~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~v~  145 (360)
T d1bjna_          70 CHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAK--KYCTPNVFDAKVTV--DGLRAVKPMREWQLSDNAAYMH  145 (360)
T ss_dssp             ESSHHHHHHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHT--TTSEEEEEECEEEE--TTEEEECCGGGCCCCSSCSCEE
T ss_pred             ECCchHHHHhhhhhcccccccccceecccchhhhhHHHHh--hcCccceeeccccC--CCcchhhhhhhhccCCceeEEE
Confidence            777755555544 4456777888777666653  345555  66665555543322  2345666667777788888888


Q ss_pred             CCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEee
Q 038416          156 NPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTS  235 (387)
Q Consensus       156 ~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~  235 (387)
                      +.+|.||+..+..   .+  .++.+++.+++|.+.+...      .++...   +..+.+.|.+|.++.++.-.+++...
T Consensus       146 ~~~~~t~~~~~~~---~i--~~~~~~~~v~vDa~~~~~~------~~vd~~---~~dv~~~ss~k~~~~~~~~~~~~~~~  211 (360)
T d1bjna_         146 YCPNETIDGIAID---ET--PDFGADVVVAADFSSTILS------RPIDVS---RYGVIYAGAQKNIGPAGLTIVIVRED  211 (360)
T ss_dssp             ECSEETTTTEECC---CC--CCCCTTCCEEEECTTTTTS------SCCCGG---GCSEEEEETTTTTSSTTCEEEEEEGG
T ss_pred             ecccccccCcccc---ce--ecccccceeeeeeeccccc------eeeeec---cceeEEEEcccccccCCCceeEeeeh
Confidence            8888888876533   22  3456789999999887522      112111   22377888999987665443333332


Q ss_pred             CCCCccc----chhHHHHHHhhhhccCCcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC-
Q 038416          236 DPNGILQ----NSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKP-  310 (387)
Q Consensus       236 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-  310 (387)
                      .......    ................++.+....+....+....+.......++..+.+..+...+...........+ 
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (360)
T d1bjna_         212 LLGKANIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKR  291 (360)
T ss_dssp             GCSCCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGG
T ss_pred             hhhhccccCCcchhhHHHHhhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcc
Confidence            2111100    01111111111112222222222222222222222334445555555555555555554222211111 


Q ss_pred             --CceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHHh
Q 038416          311 --QGAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQRH  383 (387)
Q Consensus       311 --~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~~  383 (387)
                        ..+ .+.+.++..     .+..++.. +++++||.+..|...  -+.||||+.  .++||++++++.|++..+++
T Consensus       292 ~rs~~-v~~f~~~~~-----~~~~~~~~-~l~~~Gi~~~~G~~~--~g~~Ris~~~~~t~edV~~li~~l~e~~~~~  359 (360)
T d1bjna_         292 NRSRM-NVPFQLADS-----ALDKLFLE-ESFAAGLHALKGHRV--VGGMRASIYNAMPLEGVKALTDFMVEFERRH  359 (360)
T ss_dssp             GBCSS-EEEEEESSG-----GGHHHHHH-HHHHTTEECCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             cccce-EEEEEcCCc-----ccHHHHHH-HHHHCCCEeecCCCc--cCeEEEEecCCCCHHHHHHHHHHHHHHHHHc
Confidence              123 233445431     13445554 457789998887422  235999994  58999999999999877654

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.56  E-value=8.1e-14  Score=125.39  Aligned_cols=331  Identities=13%  Similarity=-0.017  Sum_probs=169.4

Q ss_pred             ccCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCC--------CCCCCC--CCCcHHHHHHHHHHHhhcCCCCCCCC-CEEE
Q 038416           10 RHSPWPRRPLGVSLLSDSTVAEDAVVDALRTAH--------YNCYSP--TLGVPSARRGIADYLNRDLPYKLSPE-DVYL   78 (387)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~--------~~~y~~--~~~~~~lr~~ia~~~~~~~~~~~~~~-~i~~   78 (387)
                      +.|++||..      +.|+.|+++|.+.+.+-.        .+|.++  ..-..+.|+.++++++      ++.+ .|++
T Consensus         4 ~~nF~pGP~------~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~------~~~~~~i~~   71 (360)
T d1w23a_           4 VFNFNAGPS------ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQ------IPNDYQILF   71 (360)
T ss_dssp             CEECCSSSC------CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHT------CCTTEEEEE
T ss_pred             eeEeCCCCc------CCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhC------CCCCCEEEE
Confidence            455667743      789999999999775310        011111  1134567778888873      3444 5788


Q ss_pred             cCChHHHHHHHHHh-hcCCCCeEEEcCCCCcc--hHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEe
Q 038416           79 TLGCSQAIEISLSV-LARPGANILIPRPGYPL--YEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVII  155 (387)
Q Consensus        79 ~~g~~~a~~~~~~~-l~~~g~~vl~~~p~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~  155 (387)
                      ++|++++...+... +.++++.+++....+++  +...+.  ..+.........  ......++.+++.....+ .   .
T Consensus        72 ~~gt~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~---~  143 (360)
T d1w23a_          72 LQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAK--LLGETHIAASTK--ANSYQSIPDFSEFQLNEN-D---A  143 (360)
T ss_dssp             ESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHH--TTSEEEEEEECG--GGTSCSCCCGGGCCCCTT-E---E
T ss_pred             eCCcHHHHHHHHHhhhcccCcccceeeccchhhhhHHHHH--Hhhhcceeeccc--cccccchhhhhhcccccc-c---c
Confidence            88887666655544 45677888777665553  334444  566555554432  111234444444443333 2   2


Q ss_pred             CCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccccCCCccEEEEecCcccccccccceEEEEee
Q 038416          156 NPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGVFGSIVPVITLGSISKRWIVPGWRLGWLVTS  235 (387)
Q Consensus       156 ~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~sK~~~~~g~r~G~i~~~  235 (387)
                      +..|.||...|   ++++.++|+++|+++|+|.+++..    .....+..++     +.+.+++|.++++|. .|+++..
T Consensus       144 ~~~~~tg~~~~---~~~i~~~~~~~g~l~ivDavqs~g----~~~id~~~~~-----vd~~~~~~~k~~~~~-~~~~~~~  210 (360)
T d1w23a_         144 YLHITSNNTIY---GTQYQNFPEINHAPLIADMSSDIL----SRPLKVNQFG-----MIYAGAQKNLGPSGV-TVVIVKK  210 (360)
T ss_dssp             EEEEESEETTT---TEECSSCCCCCSSCEEEECTTTTT----SSCCCGGGCS-----EEEEETTTTTSCTTC-EEEEEEH
T ss_pred             eeEecCCcccc---ceeeeeccccceeeEEeecccccc----cccccccccc-----ceEEeeccccccCCc-ceeeEec
Confidence            33456788876   677888999999999999999952    2233333332     445566776655543 3444432


Q ss_pred             CCCC----cccchhHHHHHHhhhhccCCcchHHHHHHHHHhhhcc-HHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CCCC
Q 038416          236 DPNG----ILQNSGFVDSIKGCLNAASHPVTFIQAAVPRIVDETN-EAFFAKIIGLLKETADICYERIKEIPCIT-CPVK  309 (387)
Q Consensus       236 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~  309 (387)
                      +...    ...................++......+....+.... ........++................... ....
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (360)
T d1w23a_         211 DLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAE  290 (360)
T ss_dssp             HHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSC
T ss_pred             hhhhcccccCCcchhhhhhhhhhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCC
Confidence            2100    0000001111111212222333332222222221111 11112222222222222222222211111 1112


Q ss_pred             CC---ceEEEEEecCcccccCCCcHHHHHHHHHHhcCeEEEcCCccCCCCeEEEEee--CChHhHHHHHHHHHHHHHH
Q 038416          310 PQ---GAMFVMVKLNVSMLEDIGDDLEFCLKLAKEESVIILPGRTVGMKNWLRIAFA--AEPATLEDGLERIKAFCQR  382 (387)
Q Consensus       310 ~~---~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~~~  382 (387)
                      +.   .+ .+.+.++..     .+..++.. .+.++||.+..|..+.  +.+|+|+.  .+.|+++++++.+++..+.
T Consensus       291 ~~~rS~~-vvsf~i~~~-----~~~~~~~~-~l~~~GI~~~~G~~~~--ggiRiS~~~~~t~e~V~~Li~~~~~~~~~  359 (360)
T d1w23a_         291 KGSRSLM-NVTFNLRNE-----ELNQQFLA-KAKEQGFVGLNGHRSV--GGCRASIYNAVPIDACIALRELMIQFKEN  359 (360)
T ss_dssp             GGGBCSS-EEEEECSSH-----HHHHHHHH-HHHHTTEESCBCCTTT--CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             hhhccee-EEEEEcCCC-----ccHHHHHH-HHHHCCCeeeeCCCcc--CcEEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence            21   22 334445421     12345554 4577899988775432  35999994  4899999999999887764

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=99.28  E-value=1e-09  Score=98.95  Aligned_cols=299  Identities=17%  Similarity=0.084  Sum_probs=172.6

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhhc-CCCCeEEEcCCCCcchHHH----hhccCCCceee
Q 038416           50 LGVPSARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVLA-RPGANILIPRPGYPLYEIH----AAGSNNNLEAR  124 (387)
Q Consensus        50 ~~~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~g~~vl~~~p~~~~~~~~----~~~~~~g~~~~  124 (387)
                      +|.-++--.+..++.+..|  .+.-+.-...|++.....++.+.. .+.+++++...+|+.+...    +.  ..|++++
T Consensus       104 QG~Lq~l~e~q~~l~eltG--md~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~--~~g~~vv  179 (437)
T d1wyua1         104 QGVLQATFEYQTMIAELAG--LEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLE--AVGAKLL  179 (437)
T ss_dssp             HHHHHHHHHHHHHHHHHHT--SSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHH--HTTCEEE
T ss_pred             HHHHHHHHHHHHHHHHhhC--CCccccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhcc--cceeeEE
Confidence            4444433344444443322  333445555667666666655543 3457889998888765443    34  5799999


Q ss_pred             eeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCcccc
Q 038416          125 HYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMG  204 (387)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~  204 (387)
                      .++.+..   ..+.++    +++++.++++.+|+. .|.+   ++++++.+++++.|.++++|..-..+.    ...+..
T Consensus       180 ~v~~~~~---~~~~~~----~~~~~Aavmi~~Pnt-~G~~---ed~~~i~~~~h~~G~l~~~~ad~~al~----~l~~Pg  244 (437)
T d1wyua1         180 TLPLEGG---RTPLPE----VGEEVGAVVVQNPNF-LGAL---EDLGPFAEAAHGAGALFVAVADPLSLG----VLKPPG  244 (437)
T ss_dssp             EECCBTT---BCCCCC----CCTTEEEEEEESSCT-TSBC---CCHHHHHHHHHHTTCEEEEECCTTGGG----TBCCHH
T ss_pred             eeecccc---cchhhh----hccceeEEEEccccc-cccc---cchHHHHHHhhhccceEEeeechhhhh----cccccc
Confidence            8886422   223222    566899999999975 7887   458999999999999877764432221    112223


Q ss_pred             ccCCCccEEEEecCccccc----ccccceEEEEeeCCCCccc-------------ch-------hHHHHHHhhhhc-c-C
Q 038416          205 VFGSIVPVITLGSISKRWI----VPGWRLGWLVTSDPNGILQ-------------NS-------GFVDSIKGCLNA-A-S  258 (387)
Q Consensus       205 ~~~~~~~~~~i~s~sK~~~----~~g~r~G~i~~~~~~~~~~-------------~~-------~~~~~~~~~~~~-~-~  258 (387)
                      .+..|   +++++ +|.|+    .+|.-.|++.+++.-..+-             ++       .--..+++.+.. + .
T Consensus       245 ~~GaD---i~~g~-~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnic  320 (437)
T d1wyua1         245 AYGAD---IAVGD-GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNIT  320 (437)
T ss_dssp             HHTCS---EEEEE-CTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCC
T ss_pred             ccccc---eEeec-cceeccccCCCcCccccccccchhhccccccccccccccCCcccceeecccccccccccccccchh
Confidence            33433   66665 44433    3445578877765210000             00       000112222211 1 1


Q ss_pred             CcchHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCce-EEEEEecCcccccCCCcHHHHHHH
Q 038416          259 HPVTFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGA-MFVMVKLNVSMLEDIGDDLEFCLK  337 (387)
Q Consensus       259 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  337 (387)
                      +...+....+...+.....+.+++..++...+++++.+.|.+++++..+ .+... .-+.++++.       +..++...
T Consensus       321 t~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~-~~~~~f~ef~v~~~~-------~~~~i~k~  392 (437)
T d1wyua1         321 TNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPF-TPKPFFNEFALALPK-------DPEAVRRA  392 (437)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEEC-SCSSBCSEEEEECSS-------CHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcCCeecc-CCCCeeeEEEEECCC-------CHHHHHHH
Confidence            2222222233334444566889999999999999999999998887733 33322 123344543       45566666


Q ss_pred             HHHhcCeEEEc-CCccCCCCeEEEEee--CChHhHHHHHHHHHHHH
Q 038416          338 LAKEESVIILP-GRTVGMKNWLRIAFA--AEPATLEDGLERIKAFC  380 (387)
Q Consensus       338 ll~~~gi~v~~-g~~~~~~~~~Ri~~~--~~~e~~~~~~~~l~~~~  380 (387)
                      + .++|+.... -......+++.|++.  .++++++++++.|++++
T Consensus       393 L-~d~G~~~~~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~eil  437 (437)
T d1wyua1         393 L-AERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL  437 (437)
T ss_dssp             H-HHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             H-HhCCCCCCcccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence            5 566885311 011123578999994  68999999999998763

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=98.96  E-value=8.2e-08  Score=87.39  Aligned_cols=295  Identities=13%  Similarity=0.041  Sum_probs=168.5

Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCEEEcCChHHHHHHHHHhh---cCCC----CeEEEcCCCCc-chHHHhhccCCCceeee
Q 038416           54 SARRGIADYLNRDLPYKLSPEDVYLTLGCSQAIEISLSVL---ARPG----ANILIPRPGYP-LYEIHAAGSNNNLEARH  125 (387)
Q Consensus        54 ~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l---~~~g----~~vl~~~p~~~-~~~~~~~~~~~g~~~~~  125 (387)
                      ++...|+++.      +.+-.+.-+-.|++.+-+.++.+.   .+.+    ..+++..+.+. .......  ..+..++.
T Consensus       110 EfQtmi~eLT------GMdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  181 (471)
T d1wyub1         110 ELGEYLKALT------GMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATAS--MAGYQVRE  181 (471)
T ss_dssp             HHHHHHHHHH------TCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHH--HTTCEEEE
T ss_pred             HHHHHHHHHh------CCCccccccchHHHHHHHHHHHHHHHhhhcccccccccccCCcccccceeeeee--cccceeec
Confidence            4455555555      232223334455555444444332   1222    23444444444 4445555  56667776


Q ss_pred             eccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEeecccccccccCCCCCccccc
Q 038416          126 YDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVIADEVYNHLAFGSTPYVPMGV  205 (387)
Q Consensus       126 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~  205 (387)
                      ++..  .....+.+.+......++.++++.+|++..+..   ++.+++.+.+++.+..+++|.+.......-..+   ..
T Consensus       182 ~~~~--~~~~~~~~~~~~~~~~~~a~v~v~~p~~~g~~e---~~~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~p---~~  253 (471)
T d1wyub1         182 IPSG--PEGEVDLEALKRELGPHVAALMLTNPNTLGLFE---RRILEISRLCKEAGVQLYYDGANLNAIMGWARP---GD  253 (471)
T ss_dssp             ECBC--TTSSBCHHHHHHHCSTTEEEEEECSSCTTSCCC---TTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCH---HH
T ss_pred             cccc--ccccccchhhhhhhhccccceeeccCCCccccc---chhhhhHHHHHhccccccccccchhhhhhcccc---Cc
Confidence            6653  334678888888888888899999998766554   347788888888888777776544322111111   11


Q ss_pred             cCCCccEEEEecCccccc----ccccceEEEEeeCCCCcccchhHHHHHHh----------------h---hh-ccCCcc
Q 038416          206 FGSIVPVITLGSISKRWI----VPGWRLGWLVTSDPNGILQNSGFVDSIKG----------------C---LN-AASHPV  261 (387)
Q Consensus       206 ~~~~~~~~~i~s~sK~~~----~~g~r~G~i~~~~~~~~~~~~~~~~~~~~----------------~---~~-~~~~~~  261 (387)
                      ...+   +++...++.||    .+|.-+|++.+.+        ++.+++--                .   +. ...+..
T Consensus       254 ~g~d---iv~vg~~q~~G~P~~~GGP~~G~~a~~~--------~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnq  322 (471)
T d1wyub1         254 MGFD---VVHLNLHKTFTVPHGGGGPGSGPVGVKA--------HLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGN  322 (471)
T ss_dssp             HTCS---EEECCTTTTTCCCCTTSCCCCCCEEECG--------GGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSC
T ss_pred             cccc---ccccccccccccccccccccccceeehh--------hhhccCCCceecCCCccccccCCCcccccchhhhhhh
Confidence            1111   33333444443    3455578887765        33332210                0   00 111222


Q ss_pred             hHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCce-EEEEEecCcccccCCCcHHHHHHHHHH
Q 038416          262 TFIQAAVPRIVDETNEAFFAKIIGLLKETADICYERIKEIPCITCPVKPQGA-MFVMVKLNVSMLEDIGDDLEFCLKLAK  340 (387)
Q Consensus       262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ll~  340 (387)
                      .+...++...+.....+.+++..+....++.++.+.|+. +|+... .+... .-+.++++..     .+..++...|+.
T Consensus       323 aL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~-~G~~~~-~~~~ff~EFvv~~~~~-----~~~~~i~k~L~~  395 (471)
T d1wyub1         323 FLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE-KGYRVP-YDGPSMHEFVAQPPEG-----FRALDLAKGLLE  395 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCBCS-SCSSCCSCEEEBCSTT-----CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhh-cCceec-cCcceeeEEeecCCCC-----CCHHHHHHHHHH
Confidence            233333444455566788999999999999999999976 477743 33221 1133444431     135567777754


Q ss_pred             hcCeEEEcCCccC--CCCeEEEEe--eCChHhHHHHHHHHHHHHHHhh
Q 038416          341 EESVIILPGRTVG--MKNWLRIAF--AAEPATLEDGLERIKAFCQRHA  384 (387)
Q Consensus       341 ~~gi~v~~g~~~~--~~~~~Ri~~--~~~~e~~~~~~~~l~~~~~~~~  384 (387)
                       +|+.- +...|.  ..+++-|++  ..+++||+++++.|++++++.+
T Consensus       396 -~G~~~-~~~~~p~~~~~~llv~vTE~~tkedID~lv~aL~~i~~e~~  441 (471)
T d1wyub1         396 -LGFHP-PTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKKPK  441 (471)
T ss_dssp             -TTCCC-CEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTSCH
T ss_pred             -cCCCC-CcccCcCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhhH
Confidence             58753 222232  256888888  4689999999999999987643

>d1ofux_ c.37.1.22 (X:) Hypothetical protein PA3008 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Bacterial cell division inhibitor SulA
domain: Hypothetical protein PA3008
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.86  E-value=0.23  Score=34.69  Aligned_cols=104  Identities=13%  Similarity=0.018  Sum_probs=67.9

Q ss_pred             CEEEcCChHHHHHHHHHhh---cCCC--CeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCc
Q 038416           75 DVYLTLGCSQAIEISLSVL---ARPG--ANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENT  149 (387)
Q Consensus        75 ~i~~~~g~~~a~~~~~~~l---~~~g--~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  149 (387)
                      ++.....+.+.+..++-.|   .+.+  .-|+...|-|.+|...+.  ..|+....+-+....+..-....+|++++.++
T Consensus         6 el~~~~~~~~~l~LL~P~L~~l~~~~~~rwi~wI~Pp~~p~a~~L~--~~Gi~~~rll~v~~~~~~d~lwa~EqaL~sg~   83 (119)
T d1ofux_           6 ELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLR--RAGLNRERILLLQAKDNAAALALSCEALRLGR   83 (119)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHHTTCSSSSEEEEESCCTTSCHHHHH--HTTCCTTSEEEECCSSHHHHHHHHHHHHHHTC
T ss_pred             eecccCCcHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCccCHHHHH--HcCCCCCeEEEEeCCChHHHHHHHHHHHhcCC
Confidence            3445555555555555544   3333  347777888888999999  89987655433222221223556777888788


Q ss_pred             eEEEEeCCCCCccccCCHHHHHHHHHHHHhcCcEEe
Q 038416          150 VAIVIINPGNPCGNVFSYQHLQKIARTARNLGIIVI  185 (387)
Q Consensus       150 ~~v~l~~p~nptG~~~~~~~~~~l~~~~~~~~~~li  185 (387)
                      ...++..+.+     ++..+++++.-.|++.+.+.+
T Consensus        84 ~~aVl~w~~~-----l~~~~~RRLqlAA~~g~t~~~  114 (119)
T d1ofux_          84 SHTVVSWLEP-----LSRAARKQLSRAAQLGQAQSL  114 (119)
T ss_dssp             EEEEEECCSS-----CCHHHHHHHHHHHHHHTCEEE
T ss_pred             ccEEEEcCCC-----CChHHHHHHHHHHHhcCCEEE
Confidence            7777777643     667889999888988887654

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=86.09  E-value=2  Score=29.41  Aligned_cols=76  Identities=13%  Similarity=0.119  Sum_probs=53.9

Q ss_pred             CeEEEcCCCCcchHHHhhccCCCceeeeeccCCCCCccCChhhHHHhhccCceEEEEeCCCCCccccCCHHHHHHHHHHH
Q 038416           98 ANILIPRPGYPLYEIHAAGSNNNLEARHYDLLPEKRWEVDLDGVEALADENTVAIVIINPGNPCGNVFSYQHLQKIARTA  177 (387)
Q Consensus        98 ~~vl~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~~~~l~~~~  177 (387)
                      ..-+..-|-|.+..+..+  ..+....-+.+++.    .-.+++.++++.+.+.+++..-+      .|..++.++.+.+
T Consensus        43 G~~~~giPVf~sV~eAv~--~~~~~~SvIfVPp~----~a~dA~~EAi~agI~~iV~ITEg------IP~~D~~~i~~~~  110 (119)
T d2nu7a1          43 GTTHLGLPVFNTVREAVA--ATGATASVIYVPAP----FCKDSILEAIDAGIKLIITITEG------IPTLDMLTVKVKL  110 (119)
T ss_dssp             TEEETTEEEESSHHHHHH--HHCCCEEEECCCGG----GHHHHHHHHHHTTCSEEEECCCC------CCHHHHHHHHHHH
T ss_pred             CcccCCCchhhHHHHHHH--HhCCCeEEEeccHH----HHHHHHHHHHHCCCCEEEEecCC------CCHHHHHHHHHHH
Confidence            344556777888888888  66666544433321    24577777888888888766655      6678899999999


Q ss_pred             HhcCcEEe
Q 038416          178 RNLGIIVI  185 (387)
Q Consensus       178 ~~~~~~li  185 (387)
                      ++.++.+|
T Consensus       111 ~~~~~~li  118 (119)
T d2nu7a1         111 DEAGVRMI  118 (119)
T ss_dssp             HHHTCEEE
T ss_pred             hhCCCEEe
Confidence            99998775