Citrus Sinensis ID: 038432

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600--
Protein Sequence
MIGLANLHQDVRFCDIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEGKSKGGNCQRVSIYRGHPLVRKQACCMEAGRLIKLPNSLEELKKIA
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcEEEEcccccEEEEccccccEEEEEEEcEEEEEEEccccEEEEEEEccccEEccHHHccccccccEEEEcccEEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccHHHcccccccccccccccccEEEcccHHHHHHHHHccccccccccccccHHHHHcccccHHHHHHHHHHHccccccHHHHHHHcccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccccHHHHHHHHccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEccccHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccHHHHHHHccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHcHHHHHHHHHHHHHHHHHHHEEEEccccHHHHHHHHHHHcHHccccccEEEEEccccccEEEEEEcEEEEEEEccccEEEEEEEccccEEEEEEEEccccccEEEEEEcHHHHHEccHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHccccccccccHHHHHHHcccHHHHHHHHHccccccHHcHHHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHcccccccccccccccccccccccccccccccccccEEEccccccccEEcccccccEEEEccccHHHHHHHc
Coil and Loop (DISEMBL)
miglanlhqdvrfcDIILVHCAGCLYYLladryphkgetwlgsvnpnftetSLWIRYISAMYWSITTMttvgygdlhavNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASnfvgrnrlpprlKKQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKaeyippredvimqneapddvYIIVSGEVEMIDYEMEKEIAVGTlqtgdmfgevgalccrpqiytyRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLiaesgeedgdpnmsVNLLTVASTGNAAFLDELLKArldpdigdskgrtplhiaasKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHctaisdpytagdlLCTAEKRNDMSVMEELVKYGLnvdskdrhGRTAIEIAMAENNVEMVNFLVMNgsdvvgankcefssTNLNDMLQKreighritvhddnstqnEVLLKKLEIIDFEAkegkskggncqrvsiyrghplvrkQACCMEagrliklpnSLEELKKIA
Flexible Loop (DISEMBL)
MIGLANLHQDVRFCDIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIeaasnfvgrnrlppRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYippredvimqneapdDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYglnvdskdrhGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHritvhddnstqneVLLKKLEIIDFEakegkskggncqrvSIYRGHPLVRKQACCMEAgrliklpnsleelkkia
Low Complexity Region (SEG)
MIGLANLHQDVRFCDIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEGKSKGGNCQRVSIYRGHPLVRKQACCMEAGRLIKLPNSLEELKKIA
Disordered region (IsUnstruct)
***LANLHQDVRFCDIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAM******NVSILKNFLQQHKKLKDLNIGDLI*************VNLLTVASTGNAAFLDELLKARLDP*I*******PLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNSTQNEVLLKKLEIIDFEAKE***KGGNCQRVSIYRGHPLVRKQACCMEAGRLIKL***********
Disordered Region (DISOPRED)
MIGLANLHQDVRFCDIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLN*HQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKL*************************LTVASTGNA*************************IAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKR*******************************************SIY****************RLIKLPNSLEELKKIA
Disordered Region (DISEMBL)
MIGLANLHQDVRFCDIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEGKSKGGNCQRVSIYRGHPLVRKQACCMEAGRLIKLPNSLEELKKIA
Disordered Region (DISPRO)
MIGLANLHQDVRFCDIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD****************************NCQRVSIYRGHPLVRKQACCMEAGRLIKLPNSLEELKKIA
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIGLANLHQDVRFCDIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEGKSKGGNCQRVSIYRGHPLVRKQACCMEAGRLIKLPNSLEELKKIA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	602	2.2.26 [Sep-21-2011]
Q38898	802	Potassium channel AKT2/3	yes	no	0.887	0.665	0.661	0.0
Q75HP9	855	Potassium channel AKT2 OS	yes	no	0.958	0.674	0.562	0.0
Q38998	857	Potassium channel AKT1 OS	no	no	0.931	0.654	0.389	1e-124
P0C550	935	Potassium channel AKT1 OS	N/A	no	0.784	0.504	0.443	1e-123
Q0JKV1	935	Potassium channel AKT1 OS	no	no	0.784	0.504	0.443	1e-123
Q8H569	907	Potassium channel AKT3 OS	no	no	0.780	0.518	0.428	1e-115
Q9SCX5	880	Probable potassium channe	no	no	0.784	0.536	0.423	1e-111
Q8GXE6	888	Potassium channel AKT6 OS	no	no	0.820	0.556	0.407	1e-111
Q39128	677	Potassium channel KAT1 OS	no	no	0.538	0.478	0.477	4e-91
Q6K3T2	718	Potassium channel KAT1 OS	no	no	0.521	0.437	0.498	7e-90

>sp|Q38898|AKT2_ARATH Potassium channel AKT2/3 OS=Arabidopsis thaliana GN=AKT2 PE=1 SV=1

 Score =  780 bits (2014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/591 (66%), Positives = 463/591 (78%), Gaps = 57/591 (9%)

Query: 16  IILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGD 75
           + LVHCAGC YYL+ADRYPH+G+TW  ++ PNFTETSL IRYI+A+YWSITTMTTVGYGD
Sbjct: 224 LFLVHCAGCSYYLIADRYPHQGKTWTDAI-PNFTETSLSIRYIAAIYWSITTMTTVGYGD 282

Query: 76  LHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRL 135
           LHA NT+EM+FI  YMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFV RNRL
Sbjct: 283 LHASNTIEMVFITVYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVNRNRL 342

Query: 136 PPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEI 195
           PPRLK QILAYMCLRFKAESLNQ  LI+QLPKSI KSICQHLFL +VEKVYLFK VS+EI
Sbjct: 343 PPRLKDQILAYMCLRFKAESLNQQHLIDQLPKSIYKSICQHLFLPSVEKVYLFKGVSREI 402

Query: 196 IVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG 255
           ++LLV+KMKAEYIPPREDVIMQNEAPDDVYIIVSGEVE+ID EME+E  +GTL+ GD+FG
Sbjct: 403 LLLLVSKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEIIDSEMERESVLGTLRCGDIFG 462

Query: 256 EVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKDLNI 315
           EVGALCCRPQ YT++TK+LSQLLRLKTS LIE MQ KQ+DN ++LKNFLQ HKKL +L+I
Sbjct: 463 EVGALCCRPQSYTFQTKSLSQLLRLKTSFLIETMQIKQQDNATMLKNFLQHHKKLSNLDI 522

Query: 316 GDLIAESGEEDGD---PNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAA 372
           GDL A+   E+ D   PN++ NL+ V +TGNAA LDELLKA+L PDI DSKG+TPLH+AA
Sbjct: 523 GDLKAQQNGENTDVVPPNIASNLIAVVTTGNAALLDELLKAKLSPDITDSKGKTPLHVAA 582

Query: 373 SKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRI 432
           S+G+E+CVLVLLKH  N+H+R                 D+NGN+ALWEAI SKH+ IFRI
Sbjct: 583 SRGYEDCVLVLLKHGCNIHIR-----------------DVNGNSALWEAIISKHYEIFRI 625

Query: 433 LYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVE 492
           LYH  AISDP+ AGDLLC A K+N++ VM+ L+K GLNVD++D HG TA+++AMAE+ ++
Sbjct: 626 LYHFAAISDPHIAGDLLCEAAKQNNVEVMKALLKQGLNVDTEDHHGVTALQVAMAEDQMD 685

Query: 493 MVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNSTQNEVL-LKKLEIID 551
           MVN L  NG+DVV  N                             T NE   L+KL +++
Sbjct: 686 MVNLLATNGADVVCVN-----------------------------THNEFTPLEKLRVVE 716

Query: 552 FEAKEGKSKGGNCQRVSIYRGHPLVRKQACCMEAGRLIKLPNSLEELKKIA 602
            E +E +       RVSIYRGHPL R++  C EAG+LI LP SL++LKKIA
Sbjct: 717 EEEEEERG------RVSIYRGHPLERRERSCNEAGKLILLPPSLDDLKKIA 761

Highly selective and weak inward-rectifying potassium channel. Plays a role in both loading and unloading potassium into/from the phloem sap. Seems to control sugar loading into phloem via a voltage-dependent process. Blocked by physiological concentrations of external calcium and by external acidification. May interact with the cytoskeleton or with regulatory proteins. Dephosphorylation by PP2CA not only leads to the inhibition of potassium currents but also to an increase of the voltage-dependence of the channel.
Arabidopsis thaliana (taxid: 3702)

>sp|Q75HP9|AKT2_ORYSJ Potassium channel AKT2 OS=Oryza sativa subsp. japonica GN=Os05g0428700 PE=2 SV=1

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/627 (56%), Positives = 452/627 (72%), Gaps = 50/627 (7%)

Query: 4   LANLHQDVRF------------CDIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTET 51
              L +D+RF              + LVHCAGCLYYL+ADRYPH+ +TW+G+V P+F E 
Sbjct: 196 FTRLEKDIRFNYFWIRCARLIAVTLFLVHCAGCLYYLIADRYPHREKTWIGAVIPDFQEA 255

Query: 52  SLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 111
           SLWIRY S++YWSITTMTTVGYGD+HA NTVEMIF IFYMLFNLGLTAYLIGNMTNLVVE
Sbjct: 256 SLWIRYTSSVYWSITTMTTVGYGDMHAQNTVEMIFNIFYMLFNLGLTAYLIGNMTNLVVE 315

Query: 112 GTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICK 171
           GTRRTMEFRNSI AASNFVGRN LPPRLK+QILAYMCL+F+AESLNQ QL++QLPKSICK
Sbjct: 316 GTRRTMEFRNSIRAASNFVGRNHLPPRLKQQILAYMCLKFRAESLNQQQLMDQLPKSICK 375

Query: 172 SICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGE 231
            IC++LFL  V+ VYLFK VS+E+++L+V KMK EYIPP+EDVI+QNEAPDDVYI+VSGE
Sbjct: 376 GICEYLFLPVVKDVYLFKGVSREVLLLMVTKMKPEYIPPKEDVIVQNEAPDDVYIVVSGE 435

Query: 232 VEMI--DYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAM 289
           VE+I  D E E+ + V TL T  +FGEV AL  RPQ +T RT+TL QLLRL+ +AL EAM
Sbjct: 436 VEVIYSDGEAEERV-VATLGTRGVFGEVSALSDRPQSFTLRTRTLCQLLRLRQAALKEAM 494

Query: 290 QSKQEDNVSILKNFLQQHKKLKDLNIGDLIAE--SGEEDGDPNMSVNLLTVASTGNAAFL 347
           QSK ED+V I+KNFL+   ++ D+ + DL+ E  +GE D   N+  NLLTVA+TGN++FL
Sbjct: 495 QSKPEDSVVIIKNFLKHQIEMHDMKVEDLLGEDAAGEYDHG-NIPCNLLTVAATGNSSFL 553

Query: 348 DELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDII 407
           ++LLK  +DPD+GDSKGRT LHIAASKG+E+CVLVLLK A NV+++              
Sbjct: 554 EDLLKVGMDPDVGDSKGRTALHIAASKGYEDCVLVLLKQACNVNIK-------------- 599

Query: 408 ILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP-YTAGDLLCTAEKRNDMSVMEELVK 466
              D  GNTALW AI+++HH IF ILYH   +S P + AGDLLC A +R D+  + EL+K
Sbjct: 600 ---DAQGNTALWNAIAARHHKIFNILYHFARVSSPHHAAGDLLCLAARRGDLDTLRELLK 656

Query: 467 YGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK-------CEFSSTNLND 519
           +GL VDS+DR G TA+ +A+AE + ++   LV+NG+ V  A            S   L +
Sbjct: 657 HGLAVDSEDRDGATALRVALAEGHADVARLLVLNGASVDRAASHNEQQAAAAVSVDELRE 716

Query: 520 MLQKREIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEG-----KSKGGNCQRVSIYRGHP 574
           +++ RE+ H +T+  D+ +     + +      +++ G     +S G +  RVSIYRGHP
Sbjct: 717 LMKTRELAHPVTIVVDSPSPAAAAVIREVGSSGDSRNGRRQSARSDGAHWPRVSIYRGHP 776

Query: 575 LVRKQACCMEAGRLIKLPNSLEELKKI 601
            VR ++   EAG+LI LP ++EE + I
Sbjct: 777 FVRNRSS--EAGKLINLPGTMEEFRII 801

Probable inward-rectifying potassium channel. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38998|AKT1_ARATH Potassium channel AKT1 OS=Arabidopsis thaliana GN=AKT1 PE=1 SV=2

 Score =  446 bits (1147), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 252/647 (38%), Positives = 368/647 (56%), Gaps = 86/647 (13%)

Query: 16  IILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGD 75
           +  VHCA C YYL+A R  +  +TW+G+   NF E SLW+RY+++MYWSITT+TTVGYGD
Sbjct: 199 LFAVHCAACFYYLIAARNSNPAKTWIGANVANFLEESLWMRYVTSMYWSITTLTTVGYGD 258

Query: 76  LHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRL 135
           LH VNT EMIF IFYMLFNLGLTAYLIGNMTNLVV GT RT  FR++I+AASNF  RN L
Sbjct: 259 LHPVNTKEMIFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRNFRDTIQAASNFAHRNHL 318

Query: 136 PPRLKKQILAYMCLRFK--AESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSK 193
           PPRL+ Q+LA++CL+++  +E L Q + ++ LPK+I  SI   LF   ++KVYLF+ VS 
Sbjct: 319 PPRLQDQMLAHLCLKYRTDSEGLQQQETLDALPKAIRSSISHFLFYSLMDKVYLFRGVSN 378

Query: 194 EIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDM 253
           +++  LV++MKAEY PP+EDVI+QNEAP D YI+V+G  +++D +   E  V  ++ GD+
Sbjct: 379 DLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVNGTADLVDVDTGTESIVREVKAGDI 438

Query: 254 FGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKD- 312
            GE+G LC RPQ++T RTK L QLLR+  +  +  +Q+   D   I+ N LQ  K++ D 
Sbjct: 439 IGEIGVLCYRPQLFTVRTKRLCQLLRMNRTTFLNIIQANVGDGTIIMNNLLQHLKEMNDP 498

Query: 313 ------LNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRT 366
                 L I +++A      G  ++ +NL   A   +   L +LLK  LDP+  D+ GRT
Sbjct: 499 VMTNVLLEIENMLAR-----GKMDLPLNLCFAAIREDDLLLHQLLKRGLDPNESDNNGRT 553

Query: 367 PLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKH 426
           PLHIAASKG   CVL+LL++ ++ + R                 D  G+  LWEA+   H
Sbjct: 554 PLHIAASKGTLNCVLLLLEYHADPNCR-----------------DAEGSVPLWEAMVEGH 596

Query: 427 HSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAM 486
             + ++L    +  D    G   CTA ++ ++ +++E+V +G +V      G +A+  A+
Sbjct: 597 EKVVKVLLEHGSTIDAGDVGHFACTAAEQGNLKLLKEIVLHGGDVTRPRATGTSALHTAV 656

Query: 487 AENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQK----------REIGHRITVHDDN 536
            E N+EMV +L+  G+DV   NK +       D+ ++          RE  H   VH + 
Sbjct: 657 CEENIEMVKYLLEQGADV---NKQDMHGWTPRDLAEQQGHEDIKALFREKLHERRVHIET 713

Query: 537 STQNEVLLKKLEI----------------IDFEAKEGKSKG----------GNCQRVSIY 570
           S+   +L   +                  + F  +E +++           G     S+ 
Sbjct: 714 SSSVPILKTGIRFLGRFTSEPNIRPASREVSFRIRETRARRKTNNFDNSLFGILANQSVP 773

Query: 571 R-----------GHPLVRKQACCME----AGRLIKLPNSLEELKKIA 602
           +           G+P VR    C E    AG+L+ LP S +EL ++ 
Sbjct: 774 KNGLATVDEGRTGNP-VRVTISCAEKDDIAGKLVLLPGSFKELLELG 819

Highly selective inward-rectifying potassium channel that mediate potassium uptake by plant roots in response to low K(+) conditions, by a calcium-, CBL-, and CIPK-dependent pathway. Involved in the stomatal regulation by monitoring the turgor pressure in guard cells. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. May interact with the cytoskeleton or with regulatory proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|P0C550|AKT1_ORYSI Potassium channel AKT1 OS=Oryza sativa subsp. indica GN=AKT1 PE=2 SV=1

 Score =  441 bits (1135), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/494 (44%), Positives = 323/494 (65%), Gaps = 22/494 (4%)

Query: 16  IILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGD 75
           +  VHCA C YYLLADRYP    TW+G+   +F E SLWIRY++++YWSITT+TTVGYGD
Sbjct: 246 LFAVHCAACFYYLLADRYPVPTSTWIGNYMADFHERSLWIRYVTSVYWSITTLTTVGYGD 305

Query: 76  LHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRL 135
           LHA NT EMIF IFYMLFNLGLTAYLIGNMTNLVV GT RT  +R++I+AA++F  RN+L
Sbjct: 306 LHAENTREMIFNIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRNYRDTIQAATSFGVRNQL 365

Query: 136 PPRLKKQILAYMCLRFK--AESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSK 193
           PPRL+ Q+++++ L+++  +E L Q ++++ LPK+I  SI Q+LF H V+ VYLF+ VS 
Sbjct: 366 PPRLQDQMISHISLKYRTDSEGLQQQEILDSLPKAIKSSISQYLFFHLVQNVYLFQGVSN 425

Query: 194 EIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDM 253
           ++I  LV++MKAEY PPREDVI+QNEAP D YI+VSG VE+++ +   +  +    +G++
Sbjct: 426 DLIFQLVSEMKAEYFPPREDVILQNEAPTDFYILVSGSVELVEQQNGADQVIQVATSGEV 485

Query: 254 FGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKDL 313
            GE+G LC RPQ++T RT++L QLLRL  +A +  +QS   D   I+ N +Q  K+ K+ 
Sbjct: 486 VGEIGVLCYRPQLFTVRTRSLCQLLRLNRTAFLSIVQSNVGDGTIIMNNLIQFLKEQKEN 545

Query: 314 NIGDLIA---ESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHI 370
           ++   +    ES    G+ ++ + L    + G+   L +LLK  +DP+  D+ G T LHI
Sbjct: 546 SVMAGVVKEIESMLARGNLDLPITLCFAVTRGDDFLLHQLLKRGMDPNESDNDGHTALHI 605

Query: 371 AASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIF 430
           AASKG+E+CV +LL++ ++ + R                 D  G   LWEA+  KH ++ 
Sbjct: 606 AASKGNEQCVRLLLEYGADPNAR-----------------DSEGKVPLWEALCEKHAAVV 648

Query: 431 RILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENN 490
           ++L    A       G   C A + +D  ++ +++ YG +V+   R G TA+  A+ + N
Sbjct: 649 QLLVEGGADLSSGDTGLYACIAVEESDTELLNDIIHYGGDVNRARRDGTTALHRAVCDGN 708

Query: 491 VEMVNFLVMNGSDV 504
           V+M   L+ +G+D+
Sbjct: 709 VQMAELLLEHGADI 722

Highly selective inward-rectifying potassium channel that mediates potassium uptake by plant roots.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q0JKV1|AKT1_ORYSJ Potassium channel AKT1 OS=Oryza sativa subsp. japonica GN=AKT1 PE=2 SV=1

 Score =  441 bits (1135), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/494 (44%), Positives = 323/494 (65%), Gaps = 22/494 (4%)

Query: 16  IILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGD 75
           +  VHCA C YYLLADRYP    TW+G+   +F E SLWIRY++++YWSITT+TTVGYGD
Sbjct: 246 LFAVHCAACFYYLLADRYPVPTSTWIGNYMADFHERSLWIRYVTSVYWSITTLTTVGYGD 305

Query: 76  LHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRL 135
           LHA NT EMIF IFYMLFNLGLTAYLIGNMTNLVV GT RT  +R++I+AA++F  RN+L
Sbjct: 306 LHAENTREMIFNIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRNYRDTIQAATSFGVRNQL 365

Query: 136 PPRLKKQILAYMCLRFK--AESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSK 193
           PPRL+ Q+++++ L+++  +E L Q ++++ LPK+I  SI Q+LF H V+ VYLF+ VS 
Sbjct: 366 PPRLQDQMISHISLKYRTDSEGLQQQEILDSLPKAIKSSISQYLFFHLVQNVYLFQGVSN 425

Query: 194 EIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDM 253
           ++I  LV++MKAEY PPREDVI+QNEAP D YI+VSG VE+++ +   +  +    +G++
Sbjct: 426 DLIFQLVSEMKAEYFPPREDVILQNEAPTDFYILVSGSVELVEQQNGADQVIQVATSGEV 485

Query: 254 FGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKDL 313
            GE+G LC RPQ++T RT++L QLLRL  +A +  +QS   D   I+ N +Q  K+ K+ 
Sbjct: 486 VGEIGVLCYRPQLFTVRTRSLCQLLRLNRTAFLSIVQSNVGDGTIIMNNLIQFLKEQKEN 545

Query: 314 NIGDLIA---ESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHI 370
           ++   +    ES    G+ ++ + L    + G+   L +LLK  +DP+  D+ G T LHI
Sbjct: 546 SVMAGVVKEIESMLARGNLDLPITLCFAVTRGDDFLLHQLLKRGMDPNESDNDGHTALHI 605

Query: 371 AASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIF 430
           AASKG+E+CV +LL++ ++ + R                 D  G   LWEA+  KH ++ 
Sbjct: 606 AASKGNEQCVRLLLEYGADPNAR-----------------DSEGKVPLWEALCEKHAAVV 648

Query: 431 RILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENN 490
           ++L    A       G   C A + +D  ++ +++ YG +V+   R G TA+  A+ + N
Sbjct: 649 QLLVEGGADLSSGDTGLYACIAVEESDTELLNDIIHYGGDVNRARRDGTTALHRAVCDGN 708

Query: 491 VEMVNFLVMNGSDV 504
           V+M   L+ +G+D+
Sbjct: 709 VQMAELLLEHGADI 722

Highly selective inward-rectifying potassium channel that mediates potassium uptake by plant roots. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. May be a major salt-sensitive potassium channel in roots.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8H569|AKT3_ORYSJ Potassium channel AKT3 OS=Oryza sativa subsp. japonica GN=Os07g0175400 PE=3 SV=1

 Score =  417 bits (1071), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/502 (42%), Positives = 316/502 (62%), Gaps = 32/502 (6%)

Query: 16  IILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGD 75
           +  VHC+ C YYLLADRYP    TW+ +  PNF + S+W RY+++MYWSITT++TVGYGD
Sbjct: 215 LFAVHCSACFYYLLADRYPDPTNTWISAYMPNFHKASIWSRYVASMYWSITTLSTVGYGD 274

Query: 76  LHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRL 135
           +HA NT EM+F   YMLFNLGLTAY+IGNMTNLVV GT RT +FR+ I+AA++F  R++L
Sbjct: 275 MHAENTGEMVFTTTYMLFNLGLTAYIIGNMTNLVVHGTSRTRKFRDMIQAATSFAQRHQL 334

Query: 136 PPRLKKQILAYMCLRFK--AESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSK 193
           P RL++Q+++++ L+F+  +E L+Q +  E LPK+I  SI  HLF   V+ VYLF+ VS 
Sbjct: 335 PARLQEQMVSHLSLKFRTNSEGLHQQETFEALPKAIKSSISHHLFFGLVQNVYLFEGVSN 394

Query: 194 EIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIA-----VGTL 248
           ++I  LV++M AEY  PRED+I+QNEAP D YIIVSG +E+I+     E A      G  
Sbjct: 395 DLIFQLVSEMNAEYFAPREDIILQNEAPADFYIIVSGSMELIELHNGIEQASVLTLAGMA 454

Query: 249 QTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHK 308
           ++GD+ GE+G LC RPQ++T RT++L QLLRL  +A +  +QS   D   ++ N +Q  +
Sbjct: 455 KSGDVVGEIGVLCYRPQLFTARTRSLCQLLRLDRAAFLRIIQSNIADGTIVMNNLIQYLR 514

Query: 309 KLKDLNIGDLIAESGEED-----GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSK 363
           + K+  I  ++A + E D     G  +  + L   AS G++  L +LLK  LDP+  D  
Sbjct: 515 EKKE--IASIVAVAKEIDDMLARGQMDFPITLCFAASKGDSFLLHQLLKRGLDPNESDHY 572

Query: 364 GRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAIS 423
           GRT LHIAAS G+E+CV +LL++ ++ + R                 D  G   LWEA+ 
Sbjct: 573 GRTALHIAASNGNEQCVRLLLENGADSNSR-----------------DPEGRVPLWEALC 615

Query: 424 SKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSK-DRHGRTAI 482
            +H ++ ++L    A      A      A ++ND +++ E+V++G +V       G TA+
Sbjct: 616 RRHQTVVQLLVDAGADLSGGDAAPYARVAVEQNDAALLGEIVRHGGDVSGACSGDGTTAL 675

Query: 483 EIAMAENNVEMVNFLVMNGSDV 504
             A+ + NV+M   L+ +G+D 
Sbjct: 676 HRAVLDGNVQMARLLLEHGADA 697

Probable inward-rectifying potassium channel. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SCX5|AKT5_ARATH Probable potassium channel AKT5 OS=Arabidopsis thaliana GN=AKT5 PE=2 SV=2

 Score =  402 bits (1034), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/493 (42%), Positives = 307/493 (62%), Gaps = 21/493 (4%)

Query: 16  IILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGD 75
           + +VHC  C  Y +A  YP    T++     N+ + SL IRY++AMYWSITT +T GYGD
Sbjct: 223 LFVVHCGACFCYSIAAHYPDPSMTFMALAEANWKQKSLLIRYVTAMYWSITTFSTTGYGD 282

Query: 76  LHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRL 135
           +H  N  E  FI+FYM+FNLGL AY+IGNMTNLVV  T RT  FR++I+AAS F  RN L
Sbjct: 283 IHGNNAEERAFILFYMIFNLGLLAYIIGNMTNLVVHVTSRTRNFRDTIQAASAFAQRNNL 342

Query: 136 PPRLKKQILAYMCLRFK--AESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSK 193
           P  L++Q++A++ LR++  +E L Q ++I+ LPK+I  SI  +LF   V+K YLF  +S 
Sbjct: 343 PLGLQEQMVAHLSLRYRTDSEGLQQQEIIDSLPKAIRSSISHYLFYEVVDKTYLFHGISN 402

Query: 194 EIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDM 253
           +++  LV++MKAEY PP+EDVI++NEAP D YI+V+G V++I      +  VG  QTG +
Sbjct: 403 DLLFQLVSEMKAEYFPPKEDVILRNEAPSDFYIMVTGAVDIIARVNGVDQVVGEAQTGHV 462

Query: 254 FGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKDL 313
           FGEVG LC RPQ++T RTK LSQLLRL  +A +  +Q+   D   I+ N LQ  K   D 
Sbjct: 463 FGEVGVLCYRPQLFTVRTKRLSQLLRLNRTAFLNLVQANVGDGAIIMNNLLQHLKDSTDP 522

Query: 314 NIGDLIAESG--EEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIA 371
            +  ++AE+      G  ++ ++L   A+ G+   L +LLK   +P+  D  GRT LHIA
Sbjct: 523 VMKGILAETELMLAQGKMDLPLSLCFAAARGDDLLLHQLLKRGSNPNETDKNGRTALHIA 582

Query: 372 ASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFR 431
           ASKG + CV++LL+H ++ ++R                 D  G+  LWEAI  +H    +
Sbjct: 583 ASKGSQYCVVLLLEHGADPNIR-----------------DSEGSVPLWEAIIGRHEENAK 625

Query: 432 ILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNV 491
           +L    A     T G   C A  +N+++ ++++VKYG ++   D +G TA+  A++E N+
Sbjct: 626 LLSENGATLSFDTVGYFSCLAVGQNNLNALKDIVKYGGDISLSDVNGTTALHRAVSEGNL 685

Query: 492 EMVNFLVMNGSDV 504
           E+V FL+  G+D+
Sbjct: 686 EIVQFLLEKGADM 698

Probable potassium channel. May interact with the cytoskeleton or with regulatory proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXE6|AKT6_ARATH Potassium channel AKT6 OS=Arabidopsis thaliana GN=AKT6 PE=1 SV=2

 Score =  402 bits (1034), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/515 (40%), Positives = 316/515 (61%), Gaps = 21/515 (4%)

Query: 16  IILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGD 75
           + ++HC  C  Y +A  YP   +T++   + N+ E+ + +RY +AMYWSITT +T GYGD
Sbjct: 225 LFVIHCGACFLYSIAAHYPDPSKTFMALTDENWKESPIAVRYNTAMYWSITTFSTTGYGD 284

Query: 76  LHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRL 135
           +H VN+ EM FI+FYM+FNLGL+AY+IGNMTNLVV  T RT +FR++I+AAS F  RN L
Sbjct: 285 IHGVNSREMTFILFYMVFNLGLSAYIIGNMTNLVVHVTGRTRKFRDTIQAASGFGQRNNL 344

Query: 136 PPRLKKQILAYMCLRFK--AESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSK 193
           P RL+ Q++A++CLR++  +E L Q ++I+ LPK+I  SI  +LF   V+K+YLF  +S 
Sbjct: 345 PVRLQDQMVAHLCLRYRTDSEGLQQQEIIDSLPKAIRSSISHYLFYEVVDKIYLFHGISN 404

Query: 194 EIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDM 253
           +++  LV +MKAEY PP+EDVI+QNEAP D YI+V+G V++I      E  V   Q G +
Sbjct: 405 DLLFQLVTEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDIIARVNGVEQVVSEAQRGHV 464

Query: 254 FGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKDL 313
           FGEVG LC RPQ++T RTK LSQLLRL  + L+  +Q+   D   I+ N LQ  K  +D 
Sbjct: 465 FGEVGVLCYRPQLFTVRTKRLSQLLRLNRTVLLNLVQANVGDGAIIMNNLLQHLKDSEDP 524

Query: 314 NIGDLIAESGE--EDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIA 371
            +  ++A++      G  ++ ++L   A+ G+   L +LL+    P+  D  GRT LHIA
Sbjct: 525 VMKGVLADTEHMLAQGKMDLPLSLCFAAARGDDLLLHQLLRRGSSPNEMDKDGRTALHIA 584

Query: 372 ASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFR 431
           ASKG   CV++LL+H ++ ++R                 D  GN  LWEAI  +H  I +
Sbjct: 585 ASKGSHYCVVLLLEHGADPNIR-----------------DSEGNVPLWEAIIGRHREIAK 627

Query: 432 ILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNV 491
           +L    A     +       A ++N +  +++++KYG +V   D +G TA+  A++E ++
Sbjct: 628 LLAENGAKLSLDSVSYFSGLAVEKNCLDALKDIIKYGGDVTLPDGNGTTALHRAVSEGHL 687

Query: 492 EMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREI 526
           E+V FL+  G+D+   +   ++   L D     EI
Sbjct: 688 EIVKFLLDQGADLDWPDSYGWTPRGLADHQGNEEI 722

Highly selective inward-rectifying potassium channel that could mediate potassium uptake in the pollen membrane. Plays an important role in pollen tube development. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. May interact with the cytoskeleton or with regulatory proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39128|KAT1_ARATH Potassium channel KAT1 OS=Arabidopsis thaliana GN=KAT1 PE=1 SV=2

 Score =  335 bits (860), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 161/337 (47%), Positives = 219/337 (64%), Gaps = 13/337 (3%)

Query: 4   LANLHQDVRF------------CDIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTET 51
            A L +D+RF              +  +HCAGC  YL+ADRYP+  +TW+G+V PNF E 
Sbjct: 182 FARLEKDIRFNYFWIRCTKLISVTLFAIHCAGCFNYLIADRYPNPRKTWIGAVYPNFKEA 241

Query: 52  SLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 111
           SLW RY++A+YWSITT+TT GYGD HA N  EM+F IF+M+FNLGLTAYLIGNMTNLVV 
Sbjct: 242 SLWNRYVTALYWSITTLTTTGYGDFHAENPREMLFDIFFMMFNLGLTAYLIGNMTNLVVH 301

Query: 112 GTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICK 171
            T RT  FR+S+ AAS F  RN+LP  ++ Q+L+++CL+FK E L Q + +  LPK+I  
Sbjct: 302 WTSRTRTFRDSVRAASEFASRNQLPHDIQDQMLSHICLKFKTEGLKQQETLNNLPKAIRS 361

Query: 172 SICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGE 231
           SI  +LF   V  +YLF+ VS+  +  LV+ + AEY PP+ED+I+QNEAP D+YI+VSG 
Sbjct: 362 SIANYLFFPIVHNIYLFQGVSRNFLFQLVSDIDAEYFPPKEDIILQNEAPTDLYILVSGA 421

Query: 232 VEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQS 291
           V+   Y    +   G    G+ FGEVG L  RPQ +T RT  LSQ+LR+  ++L+ AM +
Sbjct: 422 VDFTVYVDGHDQFQGKAVIGETFGEVGVLYYRPQPFTVRTTELSQILRISRTSLMSAMHA 481

Query: 292 KQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGD 328
             +D   I+ N   + +  + + I D    SG E+ D
Sbjct: 482 HADDGRVIMNNLFMKLRGQQSIAIDD-SNTSGHENRD 517

Highly selective inward-rectifying potassium channel. This voltage-gated channel could mediate long-term potassium influx into guard cells leading to stomatal opening. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. The channel activity is enhanced upon external acidification. Also permeable to ammonium ions. Blocked by tetraethylammonium and barium ions.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6K3T2|KAT1_ORYSJ Potassium channel KAT1 OS=Oryza sativa subsp. japonica GN=Os02g0245800 PE=2 SV=1

 Score =  332 bits (850), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 164/329 (49%), Positives = 216/329 (65%), Gaps = 15/329 (4%)

Query: 4   LANLHQDVRF------------CDIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTET 51
            A L +D+RF              +  VHCAGC  Y++ADRYP+  +TW+G+V   F   
Sbjct: 179 FARLEKDIRFNYFWTRCSKLISVTLFAVHCAGCFNYMIADRYPNPEKTWIGAVMSTFRSE 238

Query: 52  SLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 111
           SLW RYI+A+YWSITT+TT GYGDLHA N  EM+F I YM+FNLGLTAYLIGNMTNLVV 
Sbjct: 239 SLWTRYITALYWSITTLTTTGYGDLHAENPTEMLFDIVYMMFNLGLTAYLIGNMTNLVVH 298

Query: 112 GTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICK 171
           GT RT +FR+SI+AAS F  RN+LP  +K+Q+L++ CL+FK E LNQ  +++ LPK I  
Sbjct: 299 GTSRTRKFRDSIQAASEFAARNQLPENIKQQVLSHFCLQFKTEGLNQQVMLDCLPKGIRS 358

Query: 172 SICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGE 231
           SI   LF   + + YLF  VS   I  LV +++AEY PP+ED+I+QNE   DVYI+VSG 
Sbjct: 359 SIAYSLFFPIIRQAYLFNGVSGNFIAELVMEVQAEYFPPKEDIILQNEGEADVYIVVSGA 418

Query: 232 VEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQS 291
           V +I      E     +  G+MFGEVG+LC  PQ +T RT  LSQLLR+  + L E ++ 
Sbjct: 419 VNIITTIHGNEQVYEKIAEGEMFGEVGSLCNIPQPFTCRTAELSQLLRISKTRLREIIEE 478

Query: 292 KQEDNVSILKNFLQQHK---KLKDLNIGD 317
            +ED+  ++ N +Q+ K    L D+N  D
Sbjct: 479 NREDSNILMNNLVQKLKLRESLPDMNQPD 507

Probable inward-rectifying potassium channel. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	602
225447945	841	PREDICTED: potassium channel AKT2/3-like	0.966	0.692	0.754	0.0
255577304	845	Potassium channel AKT2/3, putative [Rici	0.965	0.687	0.741	0.0
9955730	830	potassium channel 2 [Populus tremula x P	0.965	0.7	0.716	0.0
298204496	805	unnamed protein product [Vitis vinifera]	0.910	0.680	0.721	0.0
171904010	831	K+ channel protein [Populus euphratica]	0.963	0.697	0.714	0.0
373501957	869	potassium channel [Malus hupehensis]	0.956	0.662	0.696	0.0
4323296	832	pulvinus inward-rectifying channel for p	0.946	0.685	0.725	0.0
356528809	834	PREDICTED: potassium channel AKT2/3-like	0.960	0.693	0.714	0.0
357445481	830	Potassium channel [Medicago truncatula]	0.961	0.697	0.710	0.0
356543430	831	PREDICTED: potassium channel AKT2/3-like	0.958	0.694	0.711	0.0

>gi|225447945|ref|XP_002268924.1| PREDICTED: potassium channel AKT2/3-like [Vitis vinifera]

 Score =  951 bits (2457), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/611 (75%), Positives = 517/611 (84%), Gaps = 29/611 (4%)

Query: 4   LANLHQDVRF------------CDIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTET 51
              L +D+RF              + LVHCAGCLYYLLADRYPH+G+TW+G+V PNF ET
Sbjct: 205 FTRLEKDIRFSYFWVRCARLLSVTLFLVHCAGCLYYLLADRYPHQGKTWIGAVIPNFRET 264

Query: 52  SLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 111
           SLWIRYISA+YWSITTMTTVGYGD+HAVNT+EMIFIIFYMLFNLGLTAYLIGNMTNLVVE
Sbjct: 265 SLWIRYISALYWSITTMTTVGYGDMHAVNTMEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 324

Query: 112 GTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICK 171
           GTRRTMEFRNSIEAASNFV RNRLPPRLK+QILAYMCLRFKAESLNQHQLIEQLPKSICK
Sbjct: 325 GTRRTMEFRNSIEAASNFVCRNRLPPRLKEQILAYMCLRFKAESLNQHQLIEQLPKSICK 384

Query: 172 SICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGE 231
           SICQHLFL TVEKVYLFK +S+EI++LLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGE
Sbjct: 385 SICQHLFLPTVEKVYLFKGISREILLLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGE 444

Query: 232 VEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQS 291
           VE+IDYE EKE  VGTLQ+ DMFGEVGALCCRPQ YT+RTKTLSQLLRLKTSALIEAMQ+
Sbjct: 445 VEIIDYEGEKEHVVGTLQSADMFGEVGALCCRPQTYTFRTKTLSQLLRLKTSALIEAMQT 504

Query: 292 KQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELL 351
           K+EDNV ILKNFLQ HK+LKDLNIGDL+ E+GEED +PNM+ NLLTVASTGNAAFLDELL
Sbjct: 505 KKEDNVIILKNFLQHHKRLKDLNIGDLLVENGEEDVNPNMAFNLLTVASTGNAAFLDELL 564

Query: 352 KARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLD 411
           KA+LDPDIGDSKGRTPLHIAASKGHE+CV+VLLKHA NVH+R                 D
Sbjct: 565 KAKLDPDIGDSKGRTPLHIAASKGHEDCVMVLLKHACNVHVR-----------------D 607

Query: 412 MNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNV 471
           +NGNTALW+A+S+KH+SIF ILYHC ++SDPYT+GDLLCTA KRND++ M+EL+K GLN+
Sbjct: 608 INGNTALWDAVSAKHNSIFWILYHCASLSDPYTSGDLLCTAAKRNDLTAMKELLKQGLNI 667

Query: 472 DSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRIT 531
           DSK+R G TAI+IAMAE++ +MV  LVMNG+DV+ AN  EFSS  LN+MLQKRE+GHRI 
Sbjct: 668 DSKNRQGLTAIQIAMAEDHTDMVKLLVMNGADVIHANTYEFSSETLNEMLQKREMGHRIM 727

Query: 532 VHDDNSTQNEVLLKKLEIIDFEAKEGKSKGGNCQRVSIYRGHPLVRKQACCMEAGRLIKL 591
           V D   T +E LL+           G  KG N  RVSIYRGHPL RK++CC EAGRLI+L
Sbjct: 728 VPDTLPTDHETLLRDQGGEKEFNTNGGFKGTNVPRVSIYRGHPLQRKESCCTEAGRLIRL 787

Query: 592 PNSLEELKKIA 602
           PNSL ELK IA
Sbjct: 788 PNSLMELKAIA 798

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577304|ref|XP_002529533.1| Potassium channel AKT2/3, putative [Ricinus communis] gi|223530981|gb|EEF32836.1| Potassium channel AKT2/3, putative [Ricinus communis]

 Score =  929 bits (2400), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/612 (74%), Positives = 515/612 (84%), Gaps = 31/612 (5%)

Query: 4   LANLHQDVRF------------CDIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTET 51
              L +D+RF              + LVHCAGCLYYLLADRYPH+G TW+G+V PNF ET
Sbjct: 209 FTRLEKDIRFSYFRIRCARLLCVTLFLVHCAGCLYYLLADRYPHQGRTWIGAVIPNFRET 268

Query: 52  SLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 111
           SLWIRYISAMYWSITTMTTVGYGDLHAVNT+EMIFIIFYMLFNLGLTAYLIGNMTNLVVE
Sbjct: 269 SLWIRYISAMYWSITTMTTVGYGDLHAVNTMEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 328

Query: 112 GTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICK 171
           GTRRTMEFRNSIEAASNFV RNRLP RLK QILAYMCLRFKAESLNQ+ LIEQLPKSICK
Sbjct: 329 GTRRTMEFRNSIEAASNFVCRNRLPRRLKDQILAYMCLRFKAESLNQNHLIEQLPKSICK 388

Query: 172 SICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGE 231
           SICQHLFL TVEKVYLFK VS+EI++LLVA+MKAEYIPPREDVIMQNEAPDDVYI+VSGE
Sbjct: 389 SICQHLFLPTVEKVYLFKGVSREILMLLVAEMKAEYIPPREDVIMQNEAPDDVYIVVSGE 448

Query: 232 VEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQS 291
           VE+ID ++EKE  VGTLQ GDMFG+VGALCCRPQ +T+RTKTLSQLLRLKTS+LIEAMQ+
Sbjct: 449 VEIIDSDLEKERVVGTLQCGDMFGDVGALCCRPQSFTFRTKTLSQLLRLKTSSLIEAMQT 508

Query: 292 KQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELL 351
           +Q D ++I+KNFLQ HK LKDL +G+   ESGEEDGDPNM+ NLLTVASTGNAAFL+ELL
Sbjct: 509 RQHDYIAIMKNFLQHHKTLKDLKVGEFPFESGEEDGDPNMASNLLTVASTGNAAFLEELL 568

Query: 352 KARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLD 411
           KA+LDPDIGDSKGRTPLHIAASKGHEECV+VLL+H  N+HLR                 D
Sbjct: 569 KAKLDPDIGDSKGRTPLHIAASKGHEECVMVLLRHGCNIHLR-----------------D 611

Query: 412 MNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNV 471
           +NGNTALW+A+SSKH +IFRIL+H  +ISDP TAGDLLCTA KRND+++M+EL+K+GLNV
Sbjct: 612 INGNTALWDALSSKHQTIFRILHHFASISDPQTAGDLLCTAAKRNDLTMMKELLKHGLNV 671

Query: 472 DSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRIT 531
           D+KDR G+TAI+IAMAE  V+MV+ LVMNG+DV  +N  EFSST LN+ML+KREIGHRIT
Sbjct: 672 DAKDRQGKTAIQIAMAEKYVDMVDLLVMNGADVTASNTYEFSSTTLNEMLKKREIGHRIT 731

Query: 532 VHDDNSTQNEVLLKKLEIIDFEAKEGKSKGGNC-QRVSIYRGHPLVRKQACCMEAGRLIK 590
           V  D  T +EV+LK+ E        GKS    C  RVSIY+GHPLVRKQACC E GRLI+
Sbjct: 732 V-PDTVTSDEVILKRDEGEQECNSCGKSDELKCIIRVSIYKGHPLVRKQACCKEPGRLIR 790

Query: 591 LPNSLEELKKIA 602
           LP+SLEELK+IA
Sbjct: 791 LPDSLEELKRIA 802

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9955730|emb|CAC05489.1| potassium channel 2 [Populus tremula x Populus tremuloides]

 Score =  907 bits (2343), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/614 (71%), Positives = 514/614 (83%), Gaps = 33/614 (5%)

Query: 4   LANLHQDVRF------------CDIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTET 51
              L +D+RF              + LVHC GCLYYLLADRYPHKG+TW+G+V PNF ET
Sbjct: 187 FTRLEKDIRFSYFWVRCARLLCVTLFLVHCTGCLYYLLADRYPHKGKTWIGAVIPNFRET 246

Query: 52  SLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 111
           SLWIRYISAMYWSITTMTTVGYGDLHA N++EMIFIIFYMLFNLGLTAYLIGNMTNLVVE
Sbjct: 247 SLWIRYISAMYWSITTMTTVGYGDLHAQNSMEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 306

Query: 112 GTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICK 171
           GTRRTMEFRNSIEAASNFV RNRLPPRLK QILAYMCLRFKAE+LNQHQLIEQ PKSICK
Sbjct: 307 GTRRTMEFRNSIEAASNFVSRNRLPPRLKDQILAYMCLRFKAENLNQHQLIEQQPKSICK 366

Query: 172 SICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGE 231
           SIC HLFL TV+KVYLF  +S+E ++ LVAK+K EYIPPREDV+MQNEAPDD+YIIVSGE
Sbjct: 367 SICLHLFLPTVKKVYLFDGISRETLLQLVAKIKTEYIPPREDVVMQNEAPDDIYIIVSGE 426

Query: 232 VEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQS 291
           VE+I+  +EKE AVGTL++GDMFGE+GALCCRPQ + +RTKTLSQLLR+KT+AL++AMQ+
Sbjct: 427 VEIIESHLEKERAVGTLRSGDMFGELGALCCRPQSHLFRTKTLSQLLRIKTTALLKAMQT 486

Query: 292 KQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELL 351
            Q+D V+I+KNFLQ +K+LK L IGDL  E+GEE+ +PNM+ NLL  ASTGNAAFL+ELL
Sbjct: 487 NQDDYVAIMKNFLQHYKRLKGLKIGDLTVENGEEEDEPNMAFNLLATASTGNAAFLEELL 546

Query: 352 KARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLD 411
           +A+LDPD+GDSKGRTPLHIAASKGHEECV+VLL+H  ++HLR                 D
Sbjct: 547 RAKLDPDVGDSKGRTPLHIAASKGHEECVVVLLRHGCDIHLR-----------------D 589

Query: 412 MNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNV 471
           +NGNTALWEAISSKHHSIFRIL+   ++SDP+ AGDLLCTA K+ND+ VM+EL+K GLNV
Sbjct: 590 VNGNTALWEAISSKHHSIFRILFQNASVSDPHAAGDLLCTAAKQNDLMVMKELLKQGLNV 649

Query: 472 DSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRIT 531
           DSKDRHG+TA+++AMAEN+ +MVN LVM+G++V  AN  EFSST+LN+MLQKREIGHRIT
Sbjct: 650 DSKDRHGKTALQVAMAENHGDMVNLLVMSGAEVAEANTHEFSSTSLNEMLQKREIGHRIT 709

Query: 532 VHDDNSTQNEVLLKKLE-IIDFEAKEGKSKG--GNCQRVSIYRGHPLVRKQACCMEAGRL 588
           V  D  T NEVLLK+ E   +  +  GKSKG   +C RVSIYRGHP+VR+Q CC+EAGRL
Sbjct: 710 V-PDVLTANEVLLKRCEGEQECTSCTGKSKGSSSDCIRVSIYRGHPMVRRQTCCVEAGRL 768

Query: 589 IKLPNSLEELKKIA 602
           IKLPNSLEELK IA
Sbjct: 769 IKLPNSLEELKSIA 782

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204496|emb|CBI23771.3| unnamed protein product [Vitis vinifera]

 Score =  902 bits (2330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/611 (72%), Positives = 496/611 (81%), Gaps = 63/611 (10%)

Query: 4   LANLHQDVRF------------CDIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTET 51
              L +D+RF              + LVHCAGCLYYLLADRYPH+G+TW+G+V PNF ET
Sbjct: 203 FTRLEKDIRFSYFWVRCARLLSVTLFLVHCAGCLYYLLADRYPHQGKTWIGAVIPNFRET 262

Query: 52  SLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 111
           SLWIRYISA+YWSITTMTTVGYGD+HAVNT+EMIFIIFYMLFNLGLTAYLIGNMTNLVVE
Sbjct: 263 SLWIRYISALYWSITTMTTVGYGDMHAVNTMEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 322

Query: 112 GTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICK 171
           GTRRTMEFRNSIEAASNFV RNRLPPRLK+QILAYMCLRFKAESLNQHQLIEQLPKSICK
Sbjct: 323 GTRRTMEFRNSIEAASNFVCRNRLPPRLKEQILAYMCLRFKAESLNQHQLIEQLPKSICK 382

Query: 172 SICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGE 231
           SICQHLFL TVEKVYLFK +S+EI++LLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGE
Sbjct: 383 SICQHLFLPTVEKVYLFKGISREILLLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGE 442

Query: 232 VEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQS 291
           VE+IDYE EKE  VGTLQ+ DMFGEVGALCCRPQ YT+RTKTLSQLLRLKTSALIEAMQ+
Sbjct: 443 VEIIDYEGEKEHVVGTLQSADMFGEVGALCCRPQTYTFRTKTLSQLLRLKTSALIEAMQT 502

Query: 292 KQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELL 351
           K+EDNV ILKNFLQ HK+LKDLNIGDL+ E+GEED +PNM+ NLLTVASTGNAAFLDELL
Sbjct: 503 KKEDNVIILKNFLQHHKRLKDLNIGDLLVENGEEDVNPNMAFNLLTVASTGNAAFLDELL 562

Query: 352 KARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLD 411
           KA+LDPDIGDSKGRTPLHIAASKGHE+CV+VLLKHA NVH+R                 D
Sbjct: 563 KAKLDPDIGDSKGRTPLHIAASKGHEDCVMVLLKHACNVHVR-----------------D 605

Query: 412 MNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNV 471
           +NGNTALW+A+S+KH+SIF ILYHC ++SDPYT+GDLLCTA KRND++ M+EL+K GLN+
Sbjct: 606 INGNTALWDAVSAKHNSIFWILYHCASLSDPYTSGDLLCTAAKRNDLTAMKELLKQGLNI 665

Query: 472 DSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRIT 531
           DSK+R G TAI+IAMAE++ +MV  LVMNG+DV+ AN                       
Sbjct: 666 DSKNRQGLTAIQIAMAEDHTDMVKLLVMNGADVIHAN----------------------- 702

Query: 532 VHDDNSTQNEVLLKKLEIIDFEAKEGKSKGGNCQRVSIYRGHPLVRKQACCMEAGRLIKL 591
            ++D   + E               G  KG N  RVSIYRGHPL RK++CC EAGRLI+L
Sbjct: 703 TYEDQGGEKEF-----------NTNGGFKGTNVPRVSIYRGHPLQRKESCCTEAGRLIRL 751

Query: 592 PNSLEELKKIA 602
           PNSL ELK IA
Sbjct: 752 PNSLMELKAIA 762

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171904010|gb|ACB56631.1| K+ channel protein [Populus euphratica]

 Score =  887 bits (2292), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/614 (71%), Positives = 507/614 (82%), Gaps = 34/614 (5%)

Query: 4   LANLHQDVRF------------CDIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTET 51
              L +D+RF              + LVHCAGCLYYLLADRYPHKG+TW+G+V PNF ET
Sbjct: 189 FTRLEKDIRFSYFWVRCARLLCVTLFLVHCAGCLYYLLADRYPHKGKTWIGAVIPNFRET 248

Query: 52  SLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 111
           SLWIRYISAMYWSITTMTTVGYGDLHA N +EMIFIIFYMLFNLGLTAYLIGNMTNLVVE
Sbjct: 249 SLWIRYISAMYWSITTMTTVGYGDLHAQNAMEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 308

Query: 112 GTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICK 171
           GTRRTMEFRNSIEAASNFV RNRLPPRLK QILAYMCLRFKAE+LNQ+QLIEQLPKSICK
Sbjct: 309 GTRRTMEFRNSIEAASNFVSRNRLPPRLKDQILAYMCLRFKAENLNQNQLIEQLPKSICK 368

Query: 172 SICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGE 231
            ICQHLFL TV+KVYLF+ +S+E ++ LVAK+KAEYIPPREDV+MQNEAPDDVYIIVSGE
Sbjct: 369 CICQHLFLPTVKKVYLFQGISRETLLHLVAKIKAEYIPPREDVVMQNEAPDDVYIIVSGE 428

Query: 232 VEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQS 291
           VE+I+  + K   +  L++GDMFGEVGAL CRPQ +  RT+TLSQLLR+KT+ALIEAMQ+
Sbjct: 429 VEIIESYLRKN-ELLDLRSGDMFGEVGALGCRPQSHICRTRTLSQLLRIKTTALIEAMQT 487

Query: 292 KQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELL 351
            Q+D ++I+KNFLQ +K LKDL IGDL  E+GEED DPNM+ NLL  ASTGNAAFL+ELL
Sbjct: 488 NQDDYIAIIKNFLQHYKGLKDLKIGDLTVENGEEDDDPNMASNLLATASTGNAAFLEELL 547

Query: 352 KARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLD 411
           KA+LDPDIGDSKGRTPLHIAASKGHEECV+VLL+H  ++HLR                 D
Sbjct: 548 KAKLDPDIGDSKGRTPLHIAASKGHEECVVVLLRHGCDIHLR-----------------D 590

Query: 412 MNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNV 471
           +NGNTALWEAISSKH SIFRIL+H  ++SDP+ AGDLLCTA K+ND+ VM+EL+K GL++
Sbjct: 591 VNGNTALWEAISSKHLSIFRILFHYASVSDPHAAGDLLCTAAKQNDLMVMKELLKQGLDI 650

Query: 472 DSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRIT 531
           DSK+RHG+TA+++AMAEN+ +MVN LVMNG++V  AN  E SST+LN+MLQKREIGHRIT
Sbjct: 651 DSKNRHGKTALQVAMAENHGDMVNLLVMNGAEVAEANTHELSSTSLNEMLQKREIGHRIT 710

Query: 532 VHDDNSTQNEVLLKKLE-IIDFEAKEGKSKG--GNCQRVSIYRGHPLVRKQACCMEAGRL 588
           V  D  T NEVLLK+ E   +     GKSKG   +C RVSIYRGHP+VR+Q C MEAGRL
Sbjct: 711 V-PDVLTANEVLLKRCEGEQECTLCTGKSKGSSADCVRVSIYRGHPMVRRQTCSMEAGRL 769

Query: 589 IKLPNSLEELKKIA 602
           IKLPNSLEELK IA
Sbjct: 770 IKLPNSLEELKSIA 783

Source: Populus euphratica

Species: Populus euphratica

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|373501957|gb|AEY75251.1| potassium channel [Malus hupehensis]

 Score =  876 bits (2263), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/620 (69%), Positives = 498/620 (80%), Gaps = 44/620 (7%)

Query: 4   LANLHQDVRF------CDIIL------VHCAGCLYYLLADRYPHKGETWLGSVNPNFTET 51
              L +D+RF      C  +L      VHCAGCLYYLLADRYPH+G+TW+G+V PNF ET
Sbjct: 227 FTRLEKDIRFSYFWVRCARLLSVTVFSVHCAGCLYYLLADRYPHRGKTWIGTVFPNFRET 286

Query: 52  SLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 111
            LWIRYISA+YWS+TTM+TVGYGDLHAVNTVEMIFI FYMLFNLGLTAYLIGNMTNLVVE
Sbjct: 287 GLWIRYISALYWSMTTMSTVGYGDLHAVNTVEMIFITFYMLFNLGLTAYLIGNMTNLVVE 346

Query: 112 GTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICK 171
           GTRRTMEFR+SIEAAS+FV RNRLP RL+ QILAY+CLRFKAESLNQ Q++EQ PKSICK
Sbjct: 347 GTRRTMEFRSSIEAASSFVCRNRLPQRLRDQILAYICLRFKAESLNQQQMLEQFPKSICK 406

Query: 172 SICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGE 231
           SICQHLFL  VEKVYLF+ VS+E ++ LVAKMKAEY PPREDV++QNEAP+DVYIIVSGE
Sbjct: 407 SICQHLFLPIVEKVYLFRGVSRETLLHLVAKMKAEYTPPREDVVLQNEAPEDVYIIVSGE 466

Query: 232 VEMIDYEMEKEIAVGTLQTGDMFGEVGALC-------CRPQIYTYRTKTLSQLLRLKTSA 284
           VE+ID EME+E AVGTLQ+GDMFGEV A C       CRPQ +TYRTKTLSQLLR+KT+A
Sbjct: 467 VEIIDCEMERERAVGTLQSGDMFGEVIAFCGREVGKLCRPQSFTYRTKTLSQLLRIKTTA 526

Query: 285 LIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDG-DPNMSVNLLTVASTGN 343
           L+EAMQ+K ED V +LKNF Q HKKL+DL +G+++ ESGE++G DP  + N+LT AS G+
Sbjct: 527 LVEAMQTKPEDKVQMLKNFNQHHKKLRDLRVGEILVESGEDEGDDPKAAFNMLTAASKGD 586

Query: 344 AAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLS 403
           A  LDELLKA+LDPDIGD KGRTPLHIAASKGH ECVLVLLK+A NVH+R          
Sbjct: 587 ATLLDELLKAKLDPDIGDFKGRTPLHIAASKGHYECVLVLLKYACNVHVR---------- 636

Query: 404 YDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEE 463
                  D NGNTALW+AI+SKHHSIFR LY C AISDPYTAGDLLCTA KRN+++VMEE
Sbjct: 637 -------DTNGNTALWDAIASKHHSIFRSLYFCAAISDPYTAGDLLCTAAKRNNLTVMEE 689

Query: 464 LVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQK 523
           L+K GLNVDSK++ G+TA++IAM ENN +MVN LVMNG+DV  A  C F S  L +MLQK
Sbjct: 690 LLKQGLNVDSKNQLGKTAVQIAMEENNADMVNLLVMNGADVTNAQNCLFPSQGLTEMLQK 749

Query: 524 REIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEGK-SKGGNCQRVSIYRGHPLVRKQACC 582
           RE+GHRITV D  ST NEV L K    + E   G+ S G NC RVSIYRGHP+VRK  CC
Sbjct: 750 REVGHRITVPD--STINEVPLMK----NGERNSGRESYGVNCPRVSIYRGHPMVRKTTCC 803

Query: 583 MEAGRLIKLPNSLEELKKIA 602
            EAGR+I+LP SLEEL+ IA
Sbjct: 804 REAGRVIRLPRSLEELRNIA 823

Source: Malus hupehensis

Species: Malus hupehensis

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4323296|gb|AAD16278.1| pulvinus inward-rectifying channel for potassium SPICK1 [Samanea saman]

 Score =  873 bits (2255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/590 (72%), Positives = 491/590 (83%), Gaps = 20/590 (3%)

Query: 13  FCDIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVG 72
           F  +  VHCAGCLYYLLADRYPH+G+TW+G+V PNF ETSLWIRYISAMYWSITTMTTVG
Sbjct: 226 FVTLFSVHCAGCLYYLLADRYPHQGKTWIGAVIPNFRETSLWIRYISAMYWSITTMTTVG 285

Query: 73  YGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGR 132
           YGDLHAVNT EMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAAS+FVGR
Sbjct: 286 YGDLHAVNTAEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASSFVGR 345

Query: 133 NRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVS 192
           NRLP RLK+QILAYMCLRFKAESLNQ+QLIEQLPKSIC SICQHLFL TVEKVYLFK VS
Sbjct: 346 NRLPVRLKEQILAYMCLRFKAESLNQYQLIEQLPKSICTSICQHLFLPTVEKVYLFKHVS 405

Query: 193 KEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGD 252
           +E+++ LVAKMKAEY+PPREDV+MQNEAP+DVYIIVSGEVE+ID  MEKE  +GTL  GD
Sbjct: 406 REVLLSLVAKMKAEYLPPREDVVMQNEAPEDVYIIVSGEVEIIDCVMEKERILGTLFAGD 465

Query: 253 MFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKD 312
           MFGEVGALCC+PQ +TYRTKTL+QLLRLKT+ALIEAMQSK+EDN+ ILKNFLQ  K+LKD
Sbjct: 466 MFGEVGALCCKPQYFTYRTKTLTQLLRLKTNALIEAMQSKKEDNMQILKNFLQHFKQLKD 525

Query: 313 LNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAA 372
           L+I DL+ ESGEE+ DPNM+VNLLTVASTGNAAFL+ELLKA LDPD+GDSKG+TPLHIAA
Sbjct: 526 LSIRDLMVESGEEE-DPNMAVNLLTVASTGNAAFLEELLKAGLDPDVGDSKGKTPLHIAA 584

Query: 373 SKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRI 432
           S GHE+CV VLL+HA N+H+RD                  NGNTALW+AI+SKH SIFRI
Sbjct: 585 SNGHEDCVKVLLRHACNIHIRDN-----------------NGNTALWDAIASKHLSIFRI 627

Query: 433 LYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVE 492
           LY     SDP T GDLL TA +RND++VM EL+K GL VDSKDRHG TA ++AMAEN++E
Sbjct: 628 LYQLACFSDPQTGGDLLRTAAERNDLTVMNELLKQGLKVDSKDRHGMTATQVAMAENHME 687

Query: 493 MVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNSTQNEVLLKKLEIIDF 552
           MV  LVMNG+DV       FS + LN+ML+KRE GH+ITV  D +T +E ++++ +    
Sbjct: 688 MVQLLVMNGADVSDIQNHNFSGSALNEMLRKRETGHQITV--DEATPSEHVVREDKGEQE 745

Query: 553 EAKEGKSKGGNCQRVSIYRGHPLVRKQACCMEAGRLIKLPNSLEELKKIA 602
           E   G+S   +  RVSIYRGHP+ R+   C E GRLI+ P+SLEELKKIA
Sbjct: 746 EQSWGRSSKSSFPRVSIYRGHPINRRDKNCKEPGRLIRFPDSLEELKKIA 795

Source: Samanea saman

Species: Samanea saman

Genus: Samanea

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528809|ref|XP_003532990.1| PREDICTED: potassium channel AKT2/3-like [Glycine max]

 Score =  871 bits (2251), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/612 (71%), Positives = 502/612 (82%), Gaps = 34/612 (5%)

Query: 4   LANLHQDVRF------CDIIL------VHCAGCLYYLLADRYPHKGETWLGSVNPNFTET 51
              L +D+RF      C  +L      VHCAGCLYY+LADRYPH+G+TW+G+VNPNF ET
Sbjct: 205 FTRLEKDIRFSYFWVRCARLLSVTLFSVHCAGCLYYMLADRYPHQGKTWIGAVNPNFRET 264

Query: 52  SLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 111
           SL IRYISAMYWSITTMTTVGYGDLHAVNT+EMIFIIFYMLFNLGLTAYLIGNMTNLVVE
Sbjct: 265 SLRIRYISAMYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 324

Query: 112 GTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICK 171
           GTRRTMEFRNSIEAASNFV RNRLPPRLK+QILAYMCLRFKAESLNQHQLIEQLPKSICK
Sbjct: 325 GTRRTMEFRNSIEAASNFVCRNRLPPRLKEQILAYMCLRFKAESLNQHQLIEQLPKSICK 384

Query: 172 SICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGE 231
           SICQHLF  TVEKVYLFK VSKEII+ LVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGE
Sbjct: 385 SICQHLFFATVEKVYLFKGVSKEIILSLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGE 444

Query: 232 VEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQS 291
           VE++D E EKE  +GTL TG+MFGE GALCCRPQ  TYRTKTL+QLLRLKT+ L+EAMQ 
Sbjct: 445 VEILDTETEKERILGTLHTGEMFGEFGALCCRPQSLTYRTKTLTQLLRLKTNTLLEAMQI 504

Query: 292 KQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELL 351
           K+EDN+ ILKNFLQ  K++KDL+I DL+ E+ EE+ DPNM+VNLLTVASTGNAAFL+ELL
Sbjct: 505 KREDNIQILKNFLQHFKQVKDLSIKDLMVENVEEE-DPNMAVNLLTVASTGNAAFLEELL 563

Query: 352 KARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLD 411
           +A LDPDIGDSKG+TPLHIAAS GHE CV VLLKHA N+H++                 D
Sbjct: 564 RAGLDPDIGDSKGKTPLHIAASNGHEGCVKVLLKHACNMHIK-----------------D 606

Query: 412 MNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNV 471
           MNGNTALW+AI+SKH+SIFRIL+  +A+SDP  AGDL+CTA KRN+++VM +L++ GLNV
Sbjct: 607 MNGNTALWDAIASKHYSIFRILFQLSALSDPNIAGDLMCTAAKRNELTVMTDLLRQGLNV 666

Query: 472 DSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRIT 531
           DSKD    TAI+IAMAEN+V+MV  LVMNG+DV   +  EF S+ LN+MLQKREIGH I 
Sbjct: 667 DSKDHRDTTAIQIAMAENHVDMVQLLVMNGADVSDVHNHEFCSSTLNEMLQKREIGHLIN 726

Query: 532 VHDDNSTQNEVLLKKLEIIDFEAKEGKSKGG-NCQRVSIYRGHPLVRKQACCMEAGRLIK 590
           V +     +EV+LK     + E   G+S  G    RVSIYRGHP+VR++ C MEAG+LI+
Sbjct: 727 VTE--VMLSEVVLKGRH-QEQEHNGGRSNSGLKFPRVSIYRGHPVVRREKCSMEAGKLIR 783

Query: 591 LPNSLEELKKIA 602
           LP+S+EELK IA
Sbjct: 784 LPDSIEELKTIA 795

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445481|ref|XP_003593018.1| Potassium channel [Medicago truncatula] gi|355482066|gb|AES63269.1| Potassium channel [Medicago truncatula]

 Score =  869 bits (2245), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/611 (71%), Positives = 501/611 (81%), Gaps = 32/611 (5%)

Query: 4   LANLHQDVRF------CDIIL------VHCAGCLYYLLADRYPHKGETWLGSVNPNFTET 51
              L +D+RF      C  +L      VHCAGCLYY+LAD YPH+G+TW+G+V PNF ET
Sbjct: 198 FTRLEKDIRFNYFWVRCARLLSVTLFSVHCAGCLYYMLADMYPHEGKTWIGAVIPNFRET 257

Query: 52  SLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 111
           S  IRYISA+YWSITTMTTVGYGDLHAVNT+EMIFIIFYMLFNLGLTAYLIGNMTNLVVE
Sbjct: 258 SPRIRYISAIYWSITTMTTVGYGDLHAVNTMEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 317

Query: 112 GTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICK 171
           GTRRTMEFRNSIEAASNFV RNRLPPRLK+QILAYMCLRFKAESLNQHQLIEQLPKSICK
Sbjct: 318 GTRRTMEFRNSIEAASNFVCRNRLPPRLKEQILAYMCLRFKAESLNQHQLIEQLPKSICK 377

Query: 172 SICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGE 231
            ICQHLF  TVEKVYLFK VSKEI++ LVAKMKAEYIPP+EDVIMQNE+PDDVYIIVSGE
Sbjct: 378 GICQHLFFPTVEKVYLFKGVSKEILLSLVAKMKAEYIPPKEDVIMQNESPDDVYIIVSGE 437

Query: 232 VEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQS 291
           VE+ID  +EKE  +GTL  GDMFGEVGALCCRPQ +TYRTKTL+QLLRLKT+ LIEAMQ 
Sbjct: 438 VEVIDSIIEKERILGTLTIGDMFGEVGALCCRPQNFTYRTKTLTQLLRLKTNNLIEAMQI 497

Query: 292 KQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELL 351
           K+EDN+ ILKNFLQ  K+LKDL+I DL+ E+ EED DPNM+VNLLTVASTGNAAFL+ELL
Sbjct: 498 KKEDNILILKNFLQHFKQLKDLSIKDLMVENVEED-DPNMAVNLLTVASTGNAAFLEELL 556

Query: 352 KARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLD 411
           +A LDPDIGDSK +TPLHIAAS GHEECV VLLKH  N+H++                 D
Sbjct: 557 RAGLDPDIGDSKEKTPLHIAASNGHEECVKVLLKHTCNIHIK-----------------D 599

Query: 412 MNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNV 471
           MNG+TALW AI+SKHHSIFRILY  +A+SDPYTAG+LLCTA KRND++VM EL+K GLN+
Sbjct: 600 MNGDTALWYAIASKHHSIFRILYQLSALSDPYTAGNLLCTAAKRNDITVMNELLKQGLNI 659

Query: 472 DSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRIT 531
           DSKDRHG TAI+IAM+EN+VEMV  LVMNG+DV   +  EFS++ LN+++QKREIGH I 
Sbjct: 660 DSKDRHGMTAIQIAMSENHVEMVQLLVMNGADVTDVHVHEFSASILNEIMQKREIGHLIN 719

Query: 532 VHDDNSTQNEVLLKKLEIIDFEAKEGKSKGGNCQRVSIYRGHPLVRKQACCMEAGRLIKL 591
           V +     +E +LK     + +   G+  G  C RVSIYRGHP+VR++   +EAG+LI+L
Sbjct: 720 VSE--VMPSEFVLKVQNQEEHKQIWGRYNGLECPRVSIYRGHPVVRRERGFIEAGKLIRL 777

Query: 592 PNSLEELKKIA 602
           P+SLE+LK IA
Sbjct: 778 PDSLEKLKTIA 788

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543430|ref|XP_003540163.1| PREDICTED: potassium channel AKT2/3-like [Glycine max]

 Score =  867 bits (2239), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/611 (71%), Positives = 506/611 (82%), Gaps = 34/611 (5%)

Query: 4   LANLHQDVRF------CDIIL------VHCAGCLYYLLADRYPHKGETWLGSVNPNFTET 51
              L +D+RF      C  +L      +HCAGCLYY+LADRYPH+G+TW+G+VNPNF ET
Sbjct: 206 FTRLEKDIRFSYFWVRCARLLSVTLFSIHCAGCLYYMLADRYPHQGKTWIGAVNPNFRET 265

Query: 52  SLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 111
           SL IRYISAMYWSITTMTTVGYGDLHAVNT+EMIFIIFYMLFNLGLTAYLIGNMTNLVVE
Sbjct: 266 SLRIRYISAMYWSITTMTTVGYGDLHAVNTLEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 325

Query: 112 GTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICK 171
           GTRRTMEFRNSIEAASNFV RNRLPPRLK+QILAYMCLRFKAE+LNQHQLIEQLPKSICK
Sbjct: 326 GTRRTMEFRNSIEAASNFVSRNRLPPRLKEQILAYMCLRFKAENLNQHQLIEQLPKSICK 385

Query: 172 SICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGE 231
           SICQHLF  TVEKVYLFKDVSKEI++ LVAKMKAEYIPPREDVIMQNEAPDD+YIIVSGE
Sbjct: 386 SICQHLFFATVEKVYLFKDVSKEILLSLVAKMKAEYIPPREDVIMQNEAPDDIYIIVSGE 445

Query: 232 VEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQS 291
           VE+I  EME+E  +GTL TGDMFGEVGAL  RPQ +TYRTKTL+QLLRLKT+ L+EAMQ 
Sbjct: 446 VEIIHTEMERERILGTLHTGDMFGEVGALISRPQSFTYRTKTLTQLLRLKTNTLMEAMQI 505

Query: 292 KQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELL 351
           K+ED   ILKNFLQ  K+LKDL+I DL+ E+ EE+ DPNM+VNLLTVASTGNAAFL+ELL
Sbjct: 506 KREDR-QILKNFLQHIKQLKDLSIKDLMVENVEEE-DPNMAVNLLTVASTGNAAFLEELL 563

Query: 352 KARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLD 411
           +A LDPDIGDSKG+TPLHIAASKGHEECV VLLKHA N+H++                 D
Sbjct: 564 RAGLDPDIGDSKGKTPLHIAASKGHEECVKVLLKHACNMHIK-----------------D 606

Query: 412 MNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNV 471
           MNGNTA+W+AI+SKH+SIFRIL+  +A+SDP TAGDLLCTA KRN+++V+ +L+K GLNV
Sbjct: 607 MNGNTAIWDAIASKHYSIFRILFQLSAVSDPNTAGDLLCTAAKRNELTVLTDLLKQGLNV 666

Query: 472 DSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRIT 531
           DSKD H  TAI+IAMAEN+V+MV+ LVMNG+DV   +  EF S+ L++MLQKREIGH I 
Sbjct: 667 DSKDHHDTTAIQIAMAENHVDMVHLLVMNGADVSDVHNHEFCSSTLDEMLQKREIGHLIN 726

Query: 532 VHDDNSTQNEVLLKKLEIIDFEAKEGKSKGGNCQRVSIYRGHPLVRKQACCMEAGRLIKL 591
           V +    ++ V+LK  +  + E   G+S G    RVSIYRGHP+VR++   +EAG+LI+L
Sbjct: 727 VTE--VMRSGVVLKG-KHQEQELNGGRSNGLKFPRVSIYRGHPVVRREKGSVEAGKLIRL 783

Query: 592 PNSLEELKKIA 602
           P+SLEELK IA
Sbjct: 784 PDSLEELKTIA 794

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	602
TAIR|locus:2132065	802	KT2/3 "potassium transport 2/3	0.789	0.592	0.719	1.6e-189
TAIR|locus:2043839	857	KT1 "AT2G26650" [Arabidopsis t	0.812	0.570	0.438	5.9e-112
TAIR|locus:2127866	880	KT5 "K+ transporter 5" [Arabid	0.784	0.536	0.423	1e-100
TAIR|locus:2005531	697	KAT2 "potassium channel in Ara	0.501	0.433	0.513	9.2e-86
TAIR|locus:2170468	677	KAT1 "potassium channel in Ara	0.518	0.460	0.498	8.2e-85
TAIR|locus:2005524	662	KAT3 "AT4G32650" [Arabidopsis	0.493	0.448	0.456	6.8e-71
TAIR|locus:2169866	820	GORK "gated outwardly-rectifyi	0.626	0.459	0.335	9.3e-69
TAIR|locus:2075442	828	SKOR "STELAR K+ outward rectif	0.797	0.579	0.315	9.3e-59
FB|FBgn0263257	1853	cngl "CNG channel-like" [Droso	0.445	0.144	0.268	2e-19
UNIPROTKB|F1MBN0	663	CNGA2 "Cyclic nucleotide-gated	0.397	0.360	0.244	4.8e-19

TAIR|locus:2132065 KT2/3 "potassium transport 2/3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1837 (651.7 bits), Expect = 1.6e-189, P = 1.6e-189
 Identities = 357/496 (71%), Positives = 418/496 (84%)

Query:    16 IILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGD 75
             + LVHCAGC YYL+ADRYPH+G+TW  ++ PNFTETSL IRYI+A+YWSITTMTTVGYGD
Sbjct:   224 LFLVHCAGCSYYLIADRYPHQGKTWTDAI-PNFTETSLSIRYIAAIYWSITTMTTVGYGD 282

Query:    76 LHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRL 135
             LHA NT+EM+FI  YMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFV RNRL
Sbjct:   283 LHASNTIEMVFITVYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVNRNRL 342

Query:   136 PPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEI 195
             PPRLK QILAYMCLRFKAESLNQ  LI+QLPKSI KSICQHLFL +VEKVYLFK VS+EI
Sbjct:   343 PPRLKDQILAYMCLRFKAESLNQQHLIDQLPKSIYKSICQHLFLPSVEKVYLFKGVSREI 402

Query:   196 IVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG 255
             ++LLV+KMKAEYIPPREDVIMQNEAPDDVYIIVSGEVE+ID EME+E  +GTL+ GD+FG
Sbjct:   403 LLLLVSKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEIIDSEMERESVLGTLRCGDIFG 462

Query:   256 EVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKDLNI 315
             EVGALCCRPQ YT++TK+LSQLLRLKTS LIE MQ KQ+DN ++LKNFLQ HKKL +L+I
Sbjct:   463 EVGALCCRPQSYTFQTKSLSQLLRLKTSFLIETMQIKQQDNATMLKNFLQHHKKLSNLDI 522

Query:   316 GDLIAESGEEDGD---PNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAA 372
             GDL A+   E+ D   PN++ NL+ V +TGNAA LDELLKA+L PDI DSKG+TPLH+AA
Sbjct:   523 GDLKAQQNGENTDVVPPNIASNLIAVVTTGNAALLDELLKAKLSPDITDSKGKTPLHVAA 582

Query:   373 SKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRI 432
             S+G+E+CVLVLLKH  N+H+RD                 +NGN+ALWEAI SKH+ IFRI
Sbjct:   583 SRGYEDCVLVLLKHGCNIHIRD-----------------VNGNSALWEAIISKHYEIFRI 625

Query:   433 LYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVE 492
             LYH  AISDP+ AGDLLC A K+N++ VM+ L+K GLNVD++D HG TA+++AMAE+ ++
Sbjct:   626 LYHFAAISDPHIAGDLLCEAAKQNNVEVMKALLKQGLNVDTEDHHGVTALQVAMAEDQMD 685

Query:   493 MVNFLVMNGSDVVGAN 508
             MVN L  NG+DVV  N
Sbjct:   686 MVNLLATNGADVVCVN 701

GO:0005216 "ion channel activity" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS;IDA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0042391 "regulation of membrane potential" evidence=IMP

GO:0042802 "identical protein binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2043839 KT1 "AT2G26650" [Arabidopsis thaliana (taxid:3702)]

 Score = 1105 (394.0 bits), Expect = 5.9e-112, P = 5.9e-112
 Identities = 225/513 (43%), Positives = 326/513 (63%)

Query:    16 IILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGD 75
             +  VHCA C YYL+A R  +  +TW+G+   NF E SLW+RY+++MYWSITT+TTVGYGD
Sbjct:   199 LFAVHCAACFYYLIAARNSNPAKTWIGANVANFLEESLWMRYVTSMYWSITTLTTVGYGD 258

Query:    76 LHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRL 135
             LH VNT EMIF IFYMLFNLGLTAYLIGNMTNLVV GT RT  FR++I+AASNF  RN L
Sbjct:   259 LHPVNTKEMIFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRNFRDTIQAASNFAHRNHL 318

Query:   136 PPRLKKQILAYMCLRFKAES--LNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSK 193
             PPRL+ Q+LA++CL+++ +S  L Q + ++ LPK+I  SI   LF   ++KVYLF+ VS 
Sbjct:   319 PPRLQDQMLAHLCLKYRTDSEGLQQQETLDALPKAIRSSISHFLFYSLMDKVYLFRGVSN 378

Query:   194 EIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDM 253
             +++  LV++MKAEY PP+EDVI+QNEAP D YI+V+G  +++D +   E  V  ++ GD+
Sbjct:   379 DLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVNGTADLVDVDTGTESIVREVKAGDI 438

Query:   254 FGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKDL 313
              GE+G LC RPQ++T RTK L QLLR+  +  +  +Q+   D   I+ N LQ  K++ D 
Sbjct:   439 IGEIGVLCYRPQLFTVRTKRLCQLLRMNRTTFLNIIQANVGDGTIIMNNLLQHLKEMNDP 498

Query:   314 NIGDLIAESGE--EDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIA 371
              + +++ E       G  ++ +NL   A   +   L +LLK  LDP+  D+ GRTPLHIA
Sbjct:   499 VMTNVLLEIENMLARGKMDLPLNLCFAAIREDDLLLHQLLKRGLDPNESDNNGRTPLHIA 558

Query:   372 ASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFR 431
             ASKG   CVL+LL++ ++ + RD                   G+  LWEA+   H  + +
Sbjct:   559 ASKGTLNCVLLLLEYHADPNCRD-----------------AEGSVPLWEAMVEGHEKVVK 601

Query:   432 ILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNV 491
             +L    +  D    G   CTA ++ ++ +++E+V +G +V      G +A+  A+ E N+
Sbjct:   602 VLLEHGSTIDAGDVGHFACTAAEQGNLKLLKEIVLHGGDVTRPRATGTSALHTAVCEENI 661

Query:   492 EMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKR 524
             EMV +L+  G+DV   NK +       D+ +++
Sbjct:   662 EMVKYLLEQGADV---NKQDMHGWTPRDLAEQQ 691

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS;IDA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=TAS

GO:0048767 "root hair elongation" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IMP

GO:0006813 "potassium ion transport" evidence=IC;IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0090333 "regulation of stomatal closure" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0007155 "cell adhesion" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0010107 "potassium ion import" evidence=IDA

TAIR|locus:2127866 KT5 "K+ transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 999 (356.7 bits), Expect = 1.0e-100, P = 1.0e-100
 Identities = 209/493 (42%), Positives = 307/493 (62%)

Query:    16 IILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGD 75
             + +VHC  C  Y +A  YP    T++     N+ + SL IRY++AMYWSITT +T GYGD
Sbjct:   223 LFVVHCGACFCYSIAAHYPDPSMTFMALAEANWKQKSLLIRYVTAMYWSITTFSTTGYGD 282

Query:    76 LHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRL 135
             +H  N  E  FI+FYM+FNLGL AY+IGNMTNLVV  T RT  FR++I+AAS F  RN L
Sbjct:   283 IHGNNAEERAFILFYMIFNLGLLAYIIGNMTNLVVHVTSRTRNFRDTIQAASAFAQRNNL 342

Query:   136 PPRLKKQILAYMCLRFKAES--LNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSK 193
             P  L++Q++A++ LR++ +S  L Q ++I+ LPK+I  SI  +LF   V+K YLF  +S 
Sbjct:   343 PLGLQEQMVAHLSLRYRTDSEGLQQQEIIDSLPKAIRSSISHYLFYEVVDKTYLFHGISN 402

Query:   194 EIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDM 253
             +++  LV++MKAEY PP+EDVI++NEAP D YI+V+G V++I      +  VG  QTG +
Sbjct:   403 DLLFQLVSEMKAEYFPPKEDVILRNEAPSDFYIMVTGAVDIIARVNGVDQVVGEAQTGHV 462

Query:   254 FGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKDL 313
             FGEVG LC RPQ++T RTK LSQLLRL  +A +  +Q+   D   I+ N LQ  K   D 
Sbjct:   463 FGEVGVLCYRPQLFTVRTKRLSQLLRLNRTAFLNLVQANVGDGAIIMNNLLQHLKDSTDP 522

Query:   314 NIGDLIAESGE--EDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIA 371
              +  ++AE+      G  ++ ++L   A+ G+   L +LLK   +P+  D  GRT LHIA
Sbjct:   523 VMKGILAETELMLAQGKMDLPLSLCFAAARGDDLLLHQLLKRGSNPNETDKNGRTALHIA 582

Query:   372 ASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFR 431
             ASKG + CV++LL+H ++ ++RD                   G+  LWEAI  +H    +
Sbjct:   583 ASKGSQYCVVLLLEHGADPNIRD-----------------SEGSVPLWEAIIGRHEENAK 625

Query:   432 ILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNV 491
             +L    A     T G   C A  +N+++ ++++VKYG ++   D +G TA+  A++E N+
Sbjct:   626 LLSENGATLSFDTVGYFSCLAVGQNNLNALKDIVKYGGDISLSDVNGTTALHRAVSEGNL 685

Query:   492 EMVNFLVMNGSDV 504
             E+V FL+  G+D+
Sbjct:   686 EIVQFLLEKGADM 698

GO:0005216 "ion channel activity" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2005531 KAT2 "potassium channel in Arabidopsis thaliana 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 834 (298.6 bits), Expect = 9.2e-86, Sum P(2) = 9.2e-86
 Identities = 155/302 (51%), Positives = 209/302 (69%)

Query:    16 IILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGD 75
             +  VHCAGC  YL+AD+Y    +TW+G+V PNF ETS+W RY++A+YWSITT+TT GYGD
Sbjct:   206 LFAVHCAGCFAYLIADQYHDPTKTWIGAVYPNFKETSVWSRYVTALYWSITTLTTTGYGD 265

Query:    76 LHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRL 135
             LHA N  EM+F +F+MLFNLG T+YLIGNMTNLVV  T RT  FR+++ AAS F  RN+L
Sbjct:   266 LHAENPREMLFFVFFMLFNLGFTSYLIGNMTNLVVHWTSRTRNFRDTVRAASEFASRNQL 325

Query:   136 PPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEI 195
             PP ++ Q+L+++CL+FK E L Q + +  LPK+I  SI  +LF   V+ VYLF  VS+  
Sbjct:   326 PPNIQDQMLSHICLKFKTEGLKQQEALNGLPKAIRSSIANYLFFPIVQNVYLFHGVSRNF 385

Query:   196 IVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG 255
             +  LV+ + AEY PPREDVI+QNEAP D+YI+VSG V+   Y  E++   G    GD FG
Sbjct:   386 LFQLVSDIDAEYFPPREDVILQNEAPTDLYILVSGAVDFTVYVGEEDQVQGKAVVGDAFG 445

Query:   256 EVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKDLNI 315
             E+G LC  PQ +T RT  LSQ+LR+   +L+ AM++  ED   I+ N   + +  + + I
Sbjct:   446 EIGVLCYTPQPFTVRTTELSQILRISKKSLMSAMRAHVEDGRVIMNNLFMKLRGQQSIAI 505

Query:   316 GD 317
              D
Sbjct:   506 DD 507

GO:0005216 "ion channel activity" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS;IDA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISS

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0007623 "circadian rhythm" evidence=IMP

GO:0009644 "response to high light intensity" evidence=IMP

GO:0010118 "stomatal movement" evidence=IMP

TAIR|locus:2170468 KAT1 "potassium channel in Arabidopsis thaliana 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 816 (292.3 bits), Expect = 8.2e-85, Sum P(2) = 8.2e-85
 Identities = 156/313 (49%), Positives = 212/313 (67%)

Query:    16 IILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGD 75
             +  +HCAGC  YL+ADRYP+  +TW+G+V PNF E SLW RY++A+YWSITT+TT GYGD
Sbjct:   206 LFAIHCAGCFNYLIADRYPNPRKTWIGAVYPNFKEASLWNRYVTALYWSITTLTTTGYGD 265

Query:    76 LHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRL 135
              HA N  EM+F IF+M+FNLGLTAYLIGNMTNLVV  T RT  FR+S+ AAS F  RN+L
Sbjct:   266 FHAENPREMLFDIFFMMFNLGLTAYLIGNMTNLVVHWTSRTRTFRDSVRAASEFASRNQL 325

Query:   136 PPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEI 195
             P  ++ Q+L+++CL+FK E L Q + +  LPK+I  SI  +LF   V  +YLF+ VS+  
Sbjct:   326 PHDIQDQMLSHICLKFKTEGLKQQETLNNLPKAIRSSIANYLFFPIVHNIYLFQGVSRNF 385

Query:   196 IVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG 255
             +  LV+ + AEY PP+ED+I+QNEAP D+YI+VSG V+   Y    +   G    G+ FG
Sbjct:   386 LFQLVSDIDAEYFPPKEDIILQNEAPTDLYILVSGAVDFTVYVDGHDQFQGKAVIGETFG 445

Query:   256 EVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKDLNI 315
             EVG L  RPQ +T RT  LSQ+LR+  ++L+ AM +  +D   I+ N   + +  + + I
Sbjct:   446 EVGVLYYRPQPFTVRTTELSQILRISRTSLMSAMHAHADDGRVIMNNLFMKLRGQQSIAI 505

Query:   316 GDLIAESGEEDGD 328
              D    SG E+ D
Sbjct:   506 DDSNT-SGHENRD 517

GO:0005216 "ion channel activity" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS;IDA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA;IGI

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2005524 KAT3 "AT4G32650" [Arabidopsis thaliana (taxid:3702)]

 Score = 692 (248.7 bits), Expect = 6.8e-71, Sum P(2) = 6.8e-71
 Identities = 136/298 (45%), Positives = 195/298 (65%)

Query:    16 IILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGD 75
             I  +H AGC+ Y +A  YP   +TW+GS   +F E S+W+ Y  +MYWSI T+TTVGYGD
Sbjct:   235 IFWIHLAGCILYWIAYHYPRPTDTWIGSQVEDFKERSVWLGYTYSMYWSIVTLTTVGYGD 294

Query:    76 LHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRL 135
             LHAVN+ E  F +FYMLFN+GLT+Y+IG MTNLVV G  RT   R++I     +  +NRL
Sbjct:   295 LHAVNSREKTFNMFYMLFNIGLTSYIIGIMTNLVVHGALRTFAMRSAINDILRYTSKNRL 354

Query:   136 PPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEI 195
             P  +++Q+LA+M L+FK   L Q ++++ LPK+I  SI QHLF   +E+ YLFK   + +
Sbjct:   355 PDTMREQMLAHMQLKFKTAELRQEEVLQDLPKAIRSSINQHLFRSIIEEAYLFKGFPEGL 414

Query:   196 IVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG 255
             +V LV++++AEY PP+ ++I+QNE P D Y+IVSG V++I  +   E  +  L  G M G
Sbjct:   415 LVQLVSQIQAEYFPPKMEIILQNEIPTDFYVIVSGGVDIIASKGVSEQVLAKLGPGSMAG 474

Query:   256 EVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQE-DNVSILKNFLQQHKKLKD 312
             E+G +   PQ +T RT+ LSQ++R+      E +QS  + D   I+ NF+   K L D
Sbjct:   475 EIGVVFNIPQPFTVRTRRLSQVIRIGHHKFKEMVQSDNDVDAKMIIANFMTYLKGLND 532

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0010163 "high-affinity potassium ion import" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2169866 GORK "gated outwardly-rectifying K+ channel" [Arabidopsis thaliana (taxid:3702)]

 Score = 572 (206.4 bits), Expect = 9.3e-69, Sum P(2) = 9.3e-69
 Identities = 132/394 (33%), Positives = 221/394 (56%)

Query:    13 FCDIILVHCAGCLYYLLADRYP--HKGETWLGSVN------PNFTETSLWIRYISAMYWS 64
             F ++   H A C++Y LA   P  ++G TW+GS+        NF E  LW RY +A+Y++
Sbjct:   206 FVEVYCTHTAACIFYYLATTLPPENEGYTWIGSLKLGDYSYENFREIDLWKRYTTALYFA 265

Query:    65 ITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIE 124
             I TM TVGYGD+HAVN  EMIF++ Y+ F++ L AYLIGN+T L+V+G+  T  FR+ + 
Sbjct:   266 IVTMATVGYGDIHAVNLREMIFVMIYVSFDMVLGAYLIGNITALIVKGSN-TERFRDKMN 324

Query:   125 AASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFLHTVEK 184
                +F+ R +L   L+ QI  ++ L++ +   +   +++ +P SI   I Q L+L  ++K
Sbjct:   325 DLISFMNRKKLGRDLRSQITGHVRLQYDSHYTDT-VMLQDIPASIRAKIAQLLYLPYIKK 383

Query:   185 VYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEME-KEI 243
             V LFK  S E I  +V ++  EY  P E +  Q    D +Y +  G +E +  + +  E 
Sbjct:   384 VPLFKGCSTEFINQIVIRLHEEYFLPGEVITEQGNVVDHLYFVCEGLLEALVTKTDGSEE 443

Query:   244 AVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNF 303
             +V  L     FG++  +C   Q +T R   L  LLRL   +    ++    D  +IL N 
Sbjct:   444 SVTLLGPHTSFGDISIICNISQPFTVRVCELCHLLRLDKQSFSNILEIYFHDGRTILNNI 503

Query:   304 LQQHK---KLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIG 360
             +++ +   ++K L   D++   G+++ +  + VN  + A  G+   L  L+++  DP+  
Sbjct:   504 MEEKESNDRIKKLE-SDIVIHIGKQEAELALKVN--SAAFQGDFYQLKSLIRSGADPNKT 560

Query:   361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
             D  GR+PLH+AA +G+E+  L L++   +V+L+D
Sbjct:   561 DYDGRSPLHLAACRGYEDITLFLIQEGVDVNLKD 594

GO:0005216 "ion channel activity" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015271 "outward rectifier potassium channel activity" evidence=IMP;IDA

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2075442 SKOR "STELAR K+ outward rectifier" [Arabidopsis thaliana (taxid:3702)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 162/513 (31%), Positives = 267/513 (52%)

Query:    13 FCDIILVHCAGCLYYLLADRYP--HKGETWLGSVN------PNFTETSLWIRYISAMYWS 64
             F ++   H A C++Y LA   P   +G TW+GS+         F E  LW RY ++MY++
Sbjct:   223 FVELYCTHTAACIFYYLATTLPASQEGYTWIGSLKLGDYSYSKFREIDLWTRYTTSMYFA 282

Query:    65 ITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIE 124
             + TM TVGYGD+HAVN  EMIF + Y+ F++ L AYLIGNMT L+V+G++ T  FR+ + 
Sbjct:   283 VVTMATVGYGDIHAVNMREMIFAMVYISFDMILGAYLIGNMTALIVKGSK-TERFRDKMA 341

Query:   125 AASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFLHTVEK 184
                 ++ RN+L   ++ QI  ++ L++++ S  +  +++ +P SI   I Q L+L  +EK
Sbjct:   342 DIMRYMNRNKLGRNIRGQITGHLRLQYES-SYTEAAVLQDIPVSIRAKIAQTLYLPYIEK 400

Query:   185 VYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEME-KEI 243
             V LF+  S E I  +V ++  E+  P E ++ Q    D +Y +  G +E I    +  E 
Sbjct:   401 VPLFRGCSSEFINQIVIRLHEEFFLPGEVIMEQGSVVDQLYFVCHGVLEEIGITKDGSEE 460

Query:   244 AVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNF 303
              V  LQ    FGE+  LC  PQ YT R   L ++LRL   + +  ++    D   IL N 
Sbjct:   461 IVAVLQPDHSFGEISILCNIPQPYTVRVAELCRILRLDKQSFMNILEIFFHDGRRILNNL 520

Query:   304 LQ---QHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIG 360
             L+    + ++K L   D+     +++ +  +++ L + A  G+   L  L++A  DP+  
Sbjct:   521 LEGKESNVRIKQLE-SDITFHISKQEAE--LALKLNSAAFYGDLYQLKSLIRAGGDPNKT 577

Query:   361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD------YIIFMYNLSYDIIILLDMNG 414
             D  GR+PLH+AAS+G+E+  L L++ + +V+++D       +  + N +  +  LL   G
Sbjct:   578 DYDGRSPLHLAASRGYEDITLYLIQESVDVNIKDKLGSTPLLEAIKNGNDRVAALLVKEG 637

Query:   415 NTALWE-------AISSKHHSIF--RILYH-CTAISDPYTAGDLLCTAEKRNDMSVMEEL 464
              T   E        + +K  S F  R+L +     S  Y     L  A       +  +L
Sbjct:   638 ATLNIENAGTFLCTVVAKGDSDFLKRLLSNGIDPNSKDYDHRTPLHVAASEGFYVLAIQL 697

Query:   465 VKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
             V+   NV +KDR G T ++ A+   N  ++  L
Sbjct:   698 VEASANVLAKDRWGNTPLDEALGCGNKMLIKLL 730

GO:0005216 "ion channel activity" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA;IMP;IDA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0010200 "response to chitin" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0005242 "inward rectifier potassium channel activity" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0015271 "outward rectifier potassium channel activity" evidence=IDA

FB|FBgn0263257 cngl "CNG channel-like" [Drosophila melanogaster (taxid:7227)]

 Score = 284 (105.0 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
 Identities = 76/283 (26%), Positives = 140/283 (49%)

Query:    16 IILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGD 75
             +IL H  GC Y+LL++    +G+ W+    P    T L  +Y+ ++YWS  T+TT+G  D
Sbjct:   267 LILAHWFGCFYFLLSEAEGFQGD-WVYPYRPGDYAT-LTRKYLGSLYWSTLTLTTIG--D 322

Query:    76 LHAVNT-VEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNR 134
             L    T  E IF I   L  + + A ++G + N++       +EF   ++ A  ++  ++
Sbjct:   323 LPTPETNAEYIFTIVSYLIGVFIFATIVGQVGNVITNRNANRLEFERLLDGAKTYMRHHK 382

Query:   135 LPPRLKKQILA---YMCLRFKAESLNQ-HQLIEQLPKSICKSICQHLFLHTVEKVYLFKD 190
             +P  +K+++L    Y   R + +     +  +  LP  +   +  H+ L  ++KV +F++
Sbjct:   383 VPGGMKRRVLRWYDYSWSRGRIQGGGDINTALGLLPDKLKTELALHVNLSVLKKVTIFQE 442

Query:   191 VSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQT 250
                E +  LV KMKA    P + +  + E   +++II  G +E++  E  K +   T++ 
Sbjct:   443 CQPEFLHDLVLKMKAYIFTPGDSICRKGEVAREMFIIADGILEVLS-ETGKVLT--TMKA 499

Query:   251 GDMFGEVGALCC---RPQIYTYRTKTLSQLLRLKTSALIEAMQ 290
             GD FGE+G L       +    R+   S+L  L    ++ AM+
Sbjct:   500 GDFFGEIGILNLDGLNKRTADVRSVGYSELFSLSREDVLAAMK 542

GO:0005221 "intracellular cyclic nucleotide activated cation channel activity" evidence=ISS

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|F1MBN0 CNGA2 "Cyclic nucleotide-gated olfactory channel" [Bos taurus (taxid:9913)]

 Score = 260 (96.6 bits), Expect = 4.8e-19, P = 4.8e-19
 Identities = 61/249 (24%), Positives = 129/249 (51%)

Query:    16 IILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETS---LWIRYISAMYWSITTMTTVG 72
             +I++H   C+YY ++       +TW   V PN T+     L   YI  +YWS  T+TT+G
Sbjct:   283 LIIIHWNACIYYAISKSIGFGVDTW---VYPNITDPEYGYLSREYIYCLYWSTLTLTTIG 339

Query:    73 YGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGR 132
                   V   E +F+IF  L  + + A ++GN+ +++        EF+  I+A  +++  
Sbjct:   340 ETP-PPVKDEEYLFVIFDFLIGVLIFATIVGNVGSMISNMNATRAEFQAKIDAVKHYMQF 398

Query:   133 NRLPPRLKKQILAYM-CLRFKAESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDV 191
              ++   ++ +++ +   L    +S+++ ++++ LP  +   I  ++ L T++KV +F+D 
Sbjct:   399 RKVSKEMEAKVIRWFDYLWTNKKSVDEREVLKNLPAKLRAEIAINVHLSTLKKVRIFQDC 458

Query:   192 SKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTG 251
                ++V LV K++ +   P + +  + +   ++YII  G++ ++  +   + A+  L  G
Sbjct:   459 EAGLLVELVLKLRPQVFSPGDYICRKGDIGKEMYIIKEGKLAVVADDGVTQYAL--LSAG 516

Query:   252 DMFGEVGAL 260
               FGE+  L
Sbjct:   517 SCFGEISIL 525

GO:0007608 "sensory perception of smell" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q75HP9	AKT2_ORYSJ	No assigned EC number	0.5629	0.9584	0.6748	yes	no
Q38898	AKT2_ARATH	No assigned EC number	0.6615	0.8870	0.6658	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00026473001 SubName- Full=Chromosome chr12 scaffold_38, whole genome shotgun sequence; (839 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	602
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	0.0
cd00038	115	cd00038, CAP_ED, effector domain of the CAP family	8e-22
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-22
smart00100	120	smart00100, cNMP, Cyclic nucleotide-monophosphate	2e-19
pfam00520	194	pfam00520, Ion_trans, Ion transport protein	2e-15
pfam07885	74	pfam07885, Ion_trans_2, Ion channel	5e-14
pfam00027	91	pfam00027, cNMP_binding, Cyclic nucleotide-binding	1e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-11
COG0664	214	COG0664, Crp, cAMP-binding proteins - catabolite g	1e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-10
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-09
pfam11834	69	pfam11834, DUF3354, Domain of unknown function (DU	5e-08
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-07
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-06
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-05
PRK11753	211	PRK11753, PRK11753, DNA-binding transcriptional du	5e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-05
PRK10537	393	PRK10537, PRK10537, voltage-gated potassium channe	8e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-04
smart00248	30	smart00248, ANK, ankyrin repeats	2e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	5e-04
PRK09392	236	PRK09392, ftrB, transcriptional activator FtrB; Pr	6e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.001
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.004

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 1015 bits (2625), Expect = 0.0
 Identities = 434/609 (71%), Positives = 493/609 (80%), Gaps = 30/609 (4%)

Query: 7   LHQDVRF------------CDIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLW 54
           L +D+RF              + LVHCAGCLYYL+ADRYPH+G+TW+G+V PNF ETSLW
Sbjct: 189 LEKDIRFSYFWIRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLW 248

Query: 55  IRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTR 114
           IRYISA+YWSITTMTTVGYGDLHAVNT+EMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTR
Sbjct: 249 IRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTR 308

Query: 115 RTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICKSIC 174
           RTMEFRNSIEAASNFVGRNRLPPRLK QILAYMCLRFKAESLNQ QLI+QLPKSICKSIC
Sbjct: 309 RTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKAESLNQQQLIDQLPKSICKSIC 368

Query: 175 QHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEM 234
           QHLFL  VEKVYLFK VS+EI++LLV KMKAEYIPPREDVIMQNEAPDDVYI+VSGEVE+
Sbjct: 369 QHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEI 428

Query: 235 IDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQE 294
           ID E EKE  VGTL  GD+FGEVGALCCRPQ +T+RTKTLSQLLRLKTS LIEAMQ++QE
Sbjct: 429 IDSEGEKERVVGTLGCGDIFGEVGALCCRPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQE 488

Query: 295 DNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELLKAR 354
           DNV ILKNFLQ HK+L DLN+GDL+ ++G E  DPNM+ NLLTVASTGNAA L+ELLKA+
Sbjct: 489 DNVVILKNFLQHHKELHDLNVGDLLGDNGGEHDDPNMASNLLTVASTGNAALLEELLKAK 548

Query: 355 LDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNG 414
           LDPDIGDSKGRTPLHIAASKG+E+CVLVLLKHA NVH+R                 D NG
Sbjct: 549 LDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIR-----------------DANG 591

Query: 415 NTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSK 474
           NTALW AIS+KHH IFRILYH  +ISDP+ AGDLLCTA KRND++ M+EL+K GLNVDS+
Sbjct: 592 NTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSE 651

Query: 475 DRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCE-FSSTNLNDMLQKREIGHRITVH 533
           D  G TA+++AMAE++V+MV  L+MNG+DV  AN  + FS T L ++LQKRE+GH IT+ 
Sbjct: 652 DHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQKRELGHSITIV 711

Query: 534 DDNSTQNEVLLKKLEIIDFEAKEGKSKGGNCQRVSIYRGHPLVRKQACCMEAGRLIKLPN 593
           D        L +         +   S      RVSIY+GHPL+R + CC EAG+LI LP 
Sbjct: 712 DSVPADEPDLGRDGGSRPGRLQGTSSDNQCRPRVSIYKGHPLLRNERCCNEAGKLINLPP 771

Query: 594 SLEELKKIA 602
           SLEELK IA
Sbjct: 772 SLEELKAIA 780

Length = 823

>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

 Score = 90.5 bits (225), Expect = 8e-22
 Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 1/115 (0%)

Query: 187 LFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMI-DYEMEKEIAV 245
           LF  +  E +  L   ++    P  E +I Q +  D +YI++SG VE+    E  +E  V
Sbjct: 1   LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIV 60

Query: 246 GTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSIL 300
           G L  GD+FGE+  L   P+  T R  T S+LL L  S     +Q   E    +L
Sbjct: 61  GFLGPGDLFGELALLGNGPRSATVRALTDSELLVLPRSDFRRLLQEYPELARRLL 115

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 90.9 bits (226), Expect = 8e-22
 Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 19/143 (13%)

Query: 358 DIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTA 417
           +  D  GRTPLH+AAS GH E V +LL++ ++V+ +D                  +G T 
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDN-----------------DGRTP 43

Query: 418 LWEAISSKHHSIFRILYHCTAISDPYTAGDL--LCTAEKRNDMSVMEELVKYGLNVDSKD 475
           L  A  + H  I ++L    A  +         L  A +  ++ V++ L+K+G +V+++D
Sbjct: 44  LHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARD 103

Query: 476 RHGRTAIEIAMAENNVEMVNFLV 498
           + GRT + +A    ++E+V  L+
Sbjct: 104 KDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain

 Score = 83.6 bits (207), Expect = 2e-19
 Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 187 LFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMI-DYEMEKEIAV 245
           LFK++  E +  L   ++    P  E +I Q +  D  YIIVSGEVE+    E  +E  V
Sbjct: 1   LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIIVSGEVEVYKVLEDGEEQIV 60

Query: 246 GTLQTGDMFGEVGAL--CCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNF 303
           GTL  GD FGE+  L    R          L+ LLR+     ++ +    +  + +L   
Sbjct: 61  GTLGPGDFFGELALLTNSRRAASAAAVALELATLLRIDFRDFLQLLPELPQLLLELLLEL 120

Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases. Length = 120

>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein

 Score = 74.6 bits (184), Expect = 2e-15
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 9/96 (9%)

Query: 16  IILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGD 75
           ++L+     +   L      K               S +  Y  A+ W   T+TT G+GD
Sbjct: 102 LLLLFIFAIIGVQLFGGELDKCCDK---NENPINGNSNFDSYGEALLWLFRTLTTEGWGD 158

Query: 76  LH-----AVNTVEMI-FIIFYMLFNLGLTAYLIGNM 105
           +          +  I F+IF +L  + L   LIG +
Sbjct: 159 VMYDTLVPGTVLGKIFFVIFIILGGVLLLNLLIGVI 194

This family contains Sodium, Potassium, Calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not the Pfam family due to it lacking the first four helices. Length = 194

>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel

 Score = 66.8 bits (164), Expect = 5e-14
 Identities = 18/66 (27%), Positives = 33/66 (50%)

Query: 41  LGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAY 100
            G+V  +  E      ++ A+Y+S  T+TT+GYGD+  +     +F I Y+L  + L   
Sbjct: 9   FGTVYYSLEEEGWGWDFLDALYFSFVTLTTIGYGDIVPLTDAGRLFTIIYILIGIPLFLL 68

Query: 101 LIGNMT 106
            +  + 
Sbjct: 69  FLAVLG 74

This family includes the two membrane helix type ion channels found in bacteria. Length = 74

>gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 206 EYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEME-KEIAVGTLQTGDMFGEVGALCCRP 264
                 E +  + +  D +YI++SG+V++   + + +E  +  L  GD FGE+  L   P
Sbjct: 2   RSFKKGEVIFREGDPADSLYIVLSGKVKVYKLDEDGREQILAFLGPGDFFGELALLGGEP 61

Query: 265 QIYTYRTKTLSQLLRLKTSALIEAMQS 291
           +  T    T S+LL +     +E ++ 
Sbjct: 62  RSATVVALTDSELLVIPREDFLELLEQ 88

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 58.4 bits (142), Expect = 7e-11
 Identities = 21/87 (24%), Positives = 48/87 (55%)

Query: 418 LWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRH 477
           L  A  + +  + ++L    A  +       L  A +  ++ +++ L+++G +V++KD+ 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKD 60

Query: 478 GRTAIEIAMAENNVEMVNFLVMNGSDV 504
           G TA+ +A    N+E+V  L+ +G+D+
Sbjct: 61  GNTALHLAARNGNLEIVKLLLEHGADI 87

Length = 91

>gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]

 Score = 61.0 bits (148), Expect = 1e-10
 Identities = 31/131 (23%), Positives = 66/131 (50%), Gaps = 1/131 (0%)

Query: 181 TVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMI-DYEM 239
            +++  L   +  E++ LL  K++   +P  E +  + E  D +YII+SG V++  + E 
Sbjct: 1   ALKENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTED 60

Query: 240 EKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSI 299
            +EI +G L  GD FGE+  L   P+  +    T  ++L +     +E +    +  +++
Sbjct: 61  GREIILGFLGPGDFFGELALLGGDPRSASAVALTDVEVLEIPRKDFLELLAESPKLALAL 120

Query: 300 LKNFLQQHKKL 310
           L+   ++ ++ 
Sbjct: 121 LRLLARRLRQA 131

Length = 214

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 27/86 (31%), Positives = 44/86 (51%)

Query: 309 KLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPL 368
           K  +L +  L+ E G +    +    L   A  GN   +  LL+   D +  D  G T L
Sbjct: 6   KNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTAL 65

Query: 369 HIAASKGHEECVLVLLKHASNVHLRD 394
           H+AA  G+ E V +LL+H ++++L+D
Sbjct: 66  HLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 56.1 bits (136), Expect = 4e-10
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 335 LLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
           L   A  GN   +  LL+   D ++GD+   T LH+AA  G+ E V +LL+H ++V+ +D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 395 YIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRIL 433
                             +GNTAL  A  + +  I ++L
Sbjct: 59  K-----------------DGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 58.3 bits (140), Expect = 1e-09
 Identities = 49/259 (18%), Positives = 96/259 (37%), Gaps = 53/259 (20%)

Query: 274 LSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSV 333
           L  +  L   +L  +  S ++ N+ +    L          +  LI +      D +  +
Sbjct: 18  LLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASL--SELLLKLIVDRHLAARDLDGRL 75

Query: 334 NLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHE-----ECVLVLLKHAS 388
            L + AS G+   +  LL +  D +  D+ G TPLH+AA  G+      E   +LL+  +
Sbjct: 76  PLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGA 135

Query: 389 NVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDL 448
           +               D+  L D +GNT L       H +                    
Sbjct: 136 D--------------LDVNNLRDEDGNTPL-------HWAAL------------------ 156

Query: 449 LCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGAN 508
                   D  ++E L++ G + +S++ +G TA++ A     +E+V  L+ +    +   
Sbjct: 157 ------NGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLL-DKGLHLSLL 209

Query: 509 KCEFSSTNLNDMLQKREIG 527
           K         ++ ++  + 
Sbjct: 210 KFNLEGVANANVSKRNILN 228

Length = 235

>gnl|CDD|221253 pfam11834, DUF3354, Domain of unknown function (DUF3354)

 Score = 49.8 bits (120), Expect = 5e-08
 Identities = 21/37 (56%), Positives = 26/37 (70%), Gaps = 4/37 (10%)

Query: 566 RVSIYRGHPLVRKQACCMEAGRLIKLPNSLEELKKIA 602
           RV+I+RGHP  +      EAG+LI LP SLEEL +IA
Sbjct: 3   RVTIHRGHPPEK----GKEAGKLILLPGSLEELLEIA 35

This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is about 60 amino acids in length. Length = 69

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 363 KGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
            G TPLH+AA  GH E V +LL+  ++V+ RD
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 49.9 bits (119), Expect = 3e-06
 Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 4/75 (5%)

Query: 324 EEDGDPN----MSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEEC 379
           EE  DP     ++V L  +A++G+A     LL    DP+  D  GRTPLHIA + GH + 
Sbjct: 71  EEVIDPVVAHMLTVELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQV 130

Query: 380 VLVLLKHASNVHLRD 394
           V VLL+  ++  L D
Sbjct: 131 VRVLLEFGADPTLLD 145

Length = 664

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 448 LLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
            L  A     + V++ L++ G +V++KD  GRT + +A    ++E+V  L+  G+DV
Sbjct: 10  PLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV 66

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 17/70 (24%)

Query: 364 GRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAIS 423
           GRT LH AA  G  E V  LL+   +++  D                  +GNTAL  A  
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDE-----------------DGNTALHIAAE 43

Query: 424 SKHHSIFRIL 433
           + +  + ++L
Sbjct: 44  NGNLEVLKLL 53

Length = 54

>gnl|CDD|236969 PRK11753, PRK11753, DNA-binding transcriptional dual regulator Crp; Provisional

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 209 PPREDVIMQNEAPDDVYIIVSGEVE-MIDYEMEKEIAVGTLQTGDMFGEVG 258
           P +  +I   E  + +Y IV G V  +I  E  KE+ +  L  GD  GE+G
Sbjct: 26  PAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELG 76

Length = 211

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 40.7 bits (96), Expect = 6e-05
 Identities = 17/46 (36%), Positives = 25/46 (54%)

Query: 339 ASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLL 384
           A +G    +  LL+  +D +  D  G T LHIAA  G+ E + +LL
Sbjct: 9   AISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|236711 PRK10537, PRK10537, voltage-gated potassium channel; Provisional

 Score = 45.0 bits (107), Expect = 8e-05
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 12/72 (16%)

Query: 60  AMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAY----------LIGNMTNLV 109
           A Y+SI TM+TVGYGD+  V+    +F I  ++  LG+T +          +I      +
Sbjct: 172 AFYFSIVTMSTVGYGDIVPVSESARLFTISVII--LGITVFATSISAIFGPVIRGNLKRL 229

Query: 110 VEGTRRTMEFRN 121
           V+G    M  ++
Sbjct: 230 VKGRISHMHRKD 241

Length = 393

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 350 LLKAR-LDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
           LL+   +D +  D  G TPLH+AA  G  E V  LLK   +++LRD
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRD 46

Length = 56

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 363 KGRTPLHIAASKGHEECVLVLLKHASNVHL 392
            GRTPLH+AA  G+ E V +LL   ++++ 
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 43.0 bits (101), Expect = 4e-04
 Identities = 42/181 (23%), Positives = 85/181 (46%), Gaps = 9/181 (4%)

Query: 331 MSVNLLTVASTGNAAFLDELLKARLD-PDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
            S +L     +G+   +++++K + +  +I   +  TPL  A   G  + V + +KH ++
Sbjct: 1   ASQDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGAD 60

Query: 390 V-HLRDYI-----IFMYNLSYDIIILLDMNG-NTALWEAISSKHHSIFRILYHCTAIS-D 441
           + H+   I       +   ++DII LL  NG +T++      +   I  IL     ++  
Sbjct: 61  INHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIK 120

Query: 442 PYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNG 501
                  L  A K+ D+  ++ L +YG +V+ +D +G   I IA+  N  +++  L+  G
Sbjct: 121 DAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKG 180

Query: 502 S 502
           +
Sbjct: 181 A 181

Length = 434

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 42.7 bits (100), Expect = 5e-04
 Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 24/159 (15%)

Query: 356 DPDIGDSKGRTPLHIAAS-KGHEECVLVLLKHASNVHLRDYI----IFMYNLSYDIIILL 410
           D +  D    TPLH A++   +++ V+ LL+  +NV+ RDY     I    +  +++I+ 
Sbjct: 333 DVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIIN 392

Query: 411 DMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLN 470
            +    A  EA+S K   I   L+     ++PY +               ++ L+  G N
Sbjct: 393 TLLDYGADIEALSQK---IGTALHFALCGTNPYMS---------------VKTLIDRGAN 434

Query: 471 VDSKDRHGRTAIEIAMAEN-NVEMVNFLVMNGSDVVGAN 508
           V+SK++   T +  A  +N  ++++  L+ NG+DV   N
Sbjct: 435 VNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAIN 473

Length = 682

>gnl|CDD|181817 PRK09392, ftrB, transcriptional activator FtrB; Provisional

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 4/113 (3%)

Query: 179 LHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE 238
           L  +  + LF D++      L+     +  PP   +I + E  D +++++ G VE+    
Sbjct: 6   LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASS 65

Query: 239 MEKEIAVGTLQTGDMFGEVGALCCRPQIY--TYRTKTLSQLLRLKTSALIEAM 289
            ++E  +  L+    F  + A       Y  + RT T S++L +    + EAM
Sbjct: 66  QDRETTLAILRPVSTF--ILAAVVLDAPYLMSARTLTRSRVLMIPAELVREAM 116

Length = 236

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 13/51 (25%), Positives = 28/51 (54%)

Query: 448 LLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLV 498
            L  A     + +++ L++ G++++  D  G TA+ IA    N+E++  L+
Sbjct: 4   ALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 32/177 (18%), Positives = 66/177 (37%), Gaps = 33/177 (18%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEEC---VLVLLKHASNVHLRD---YIIFMYNLS 403
           LL A  D +     G+TPLH+      E+    V +LL+  ++V+  +   +      L 
Sbjct: 33  LLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLY 92

Query: 404 YDIII-----LLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDM 458
               +     L+    +               +     T +         +  +    + 
Sbjct: 93  NATTLDVIKLLIKAGADVN------------AKDKVGRTPLH--------VYLSGFNINP 132

Query: 459 SVMEELVKYGLNVDSKDRHGRTAIEIAMAENN--VEMVNFLVMNGSDVVGANKCEFS 513
            V+  L++ G +V++ D +G T + + +   N  VE++  L+  G+DV   +    S
Sbjct: 133 KVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRS 189

Length = 471

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	602
PLN03192	823	Voltage-dependent potassium channel; Provisional	100.0
KOG0498	727	consensus K+-channel ERG and related proteins, con	100.0
KOG0500	536	consensus Cyclic nucleotide-gated cation channel C	100.0
KOG0499	815	consensus Cyclic nucleotide-gated cation channel C	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG0501	971	consensus K+-channel KCNQ [Inorganic ion transport	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02859	209	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.98
PHA02989	494	ankyrin repeat protein; Provisional	99.98
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
PHA02946	446	ankyin-like protein; Provisional	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.97
PHA03095	471	ankyrin-like protein; Provisional	99.97
KOG0508	615	consensus Ankyrin repeat protein [General function	99.97
PHA02795	437	ankyrin-like protein; Provisional	99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.96
PHA02798	489	ankyrin-like protein; Provisional	99.96
PHA02917	661	ankyrin-like protein; Provisional	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.95
PHA02730	672	ankyrin-like protein; Provisional	99.95
PHA02730	672	ankyrin-like protein; Provisional	99.95
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.95
PHA02917	661	ankyrin-like protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
KOG0508	615	consensus Ankyrin repeat protein [General function	99.94
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.94
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.94
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.94
PHA02792	631	ankyrin-like protein; Provisional	99.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.93
PHA02792	631	ankyrin-like protein; Provisional	99.93
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.92
PHA02743	166	Viral ankyrin protein; Provisional	99.92
KOG0514	452	consensus Ankyrin repeat protein [General function	99.91
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
KOG0514	452	consensus Ankyrin repeat protein [General function	99.89
PHA02741	169	hypothetical protein; Provisional	99.89
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.88
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.88
PHA02884	300	ankyrin repeat protein; Provisional	99.88
PHA02736	154	Viral ankyrin protein; Provisional	99.88
PHA02884	300	ankyrin repeat protein; Provisional	99.87
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.87
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.86
PHA02741	169	hypothetical protein; Provisional	99.86
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.85
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.84
PHA02736	154	Viral ankyrin protein; Provisional	99.84
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.83
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.83
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.82
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.8
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.77
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.75
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.74
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.72
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.71
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.7
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.64
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.6
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.57
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.55
PRK09392	236	ftrB transcriptional activator FtrB; Provisional	99.54
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.51
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.5
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.48
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.47
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.47
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.45
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.44
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.42
cd00038	115	CAP_ED effector domain of the CAP family of transc	99.38
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.38
PRK11753	211	DNA-binding transcriptional dual regulator Crp; Pr	99.36
KOG1113	368	consensus cAMP-dependent protein kinase types I an	99.36
smart00100	120	cNMP Cyclic nucleotide-monophosphate binding domai	99.31
COG2905	610	Predicted signal-transduction protein containing c	99.31
PF00027	91	cNMP_binding: Cyclic nucleotide-binding domain; In	99.31
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.27
PRK10402	226	DNA-binding transcriptional activator YeiL; Provis	99.27
PF07885	79	Ion_trans_2: Ion channel; InterPro: IPR013099 This	99.24
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.23
COG0664	214	Crp cAMP-binding proteins - catabolite gene activa	99.23
PRK11161	235	fumarate/nitrate reduction transcriptional regulat	99.21
PLN02868	413	acyl-CoA thioesterase family protein	99.2
KOG3713	477	consensus Voltage-gated K+ channel KCNB/KCNC [Inor	99.16
TIGR03697	193	NtcA_cyano global nitrogen regulator NtcA, cyanoba	99.01
KOG1419	654	consensus Voltage-gated K+ channel KCNQ [Inorganic	98.99
PRK09391	230	fixK transcriptional regulator FixK; Provisional	98.97
KOG1113	368	consensus cAMP-dependent protein kinase types I an	98.97
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.96
PF13606	30	Ank_3: Ankyrin repeat	98.94
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.9
PRK13918	202	CRP/FNR family transcriptional regulator; Provisio	98.9
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.9
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.88
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.87
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.87
PF13606	30	Ank_3: Ankyrin repeat	98.85
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.78
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.72
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.69
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.68
KOG1545	507	consensus Voltage-gated shaker-like K+ channel KCN	98.65
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.58
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.57
KOG0522	560	consensus Ankyrin repeat protein [General function	98.56
KOG0522	560	consensus Ankyrin repeat protein [General function	98.54
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.5
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.5
PRK10537	393	voltage-gated potassium channel; Provisional	98.35
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.33
KOG3684	489	consensus Ca2+-activated K+ channel proteins (inte	98.32
PF00520	200	Ion_trans: Ion transport protein calcium channel s	98.31
KOG2384	223	consensus Major histocompatibility complex protein	98.29
KOG2968	1158	consensus Predicted esterase of the alpha-beta hyd	98.24
KOG2384	223	consensus Major histocompatibility complex protein	98.22
KOG0511	516	consensus Ankyrin repeat protein [General function	98.21
KOG1420	1103	consensus Ca2+-activated K+ channel Slowpoke, alph	98.19
KOG0511	516	consensus Ankyrin repeat protein [General function	98.13
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.13
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.02
KOG4390	632	consensus Voltage-gated A-type K+ channel KCND [In	97.96
PF01007	336	IRK: Inward rectifier potassium channel; InterPro:	97.83
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.81
KOG1418	433	consensus Tandem pore domain K+ channel [Inorganic	97.58
KOG2505	591	consensus Ankyrin repeat protein [General function	97.55
KOG3827	400	consensus Inward rectifier K+ channel [Inorganic i	97.17
KOG2968	1158	consensus Predicted esterase of the alpha-beta hyd	97.16
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.09
KOG4404	350	consensus Tandem pore domain K+ channel TASK3/THIK	97.06
KOG3542	1283	consensus cAMP-regulated guanine nucleotide exchan	97.04
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.94
PRK11832	207	putative DNA-binding transcriptional regulator; Pr	96.84
PF11834	69	DUF3354: Domain of unknown function (DUF3354); Int	96.76
KOG4404	350	consensus Tandem pore domain K+ channel TASK3/THIK	96.56
KOG2505	591	consensus Ankyrin repeat protein [General function	96.5
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.45
PF04831	153	Popeye: Popeye protein conserved region; InterPro:	96.33
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.2
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.4
KOG1418	433	consensus Tandem pore domain K+ channel [Inorganic	93.43
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	92.31
KOG3542	1283	consensus cAMP-regulated guanine nucleotide exchan	92.21
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	88.52
PF00060	148	Lig_chan: Ligand-gated ion channel; InterPro: IPR0	88.11
KOG3193	1087	consensus K+ channel subunit [Inorganic ion transp	87.76
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	87.33
PLN03223	1634	Polycystin cation channel protein; Provisional	81.41

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=100.00  E-value=1.8e-94  Score=803.16  Aligned_cols=571  Identities=75%  Similarity=1.173  Sum_probs=527.6

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCCchHHHHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHH
Q 038432           15 DIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFN   94 (602)
Q Consensus        15 ~l~~~H~~aC~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g   94 (602)
                      +++++||+||+||+++..++..+++|+.....++.+.+++.+|++|+||+++|||||||||++|.|..|++|++++|++|
T Consensus       209 ~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g  288 (823)
T PLN03192        209 TLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFN  288 (823)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHH
Confidence            67899999999999998777778899987667788899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhHhHHHHhhhHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcchhHHHHhhCCHHHHHHHH
Q 038432           95 LGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICKSIC  174 (602)
Q Consensus        95 ~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~ri~~y~~~~~~~~~~~~~~~l~~lp~~l~~~v~  174 (602)
                      +++|+|++|++++++.+.++++.+|+++++.+++||+++++|+.+|+||++|++++|+.+..+++++++.||++||.+++
T Consensus       289 ~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~  368 (823)
T PLN03192        289 LGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKAESLNQQQLIDQLPKSICKSIC  368 (823)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccHHHHHHHcCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998888899999999999999999


Q ss_pred             HHhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCee
Q 038432          175 QHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMF  254 (602)
Q Consensus       175 ~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~f  254 (602)
                      .+++.+.++++++|+++|++++..++..++.+.|+|||.|+.+||.++.+|||.+|.|+++...++++.++..+++|++|
T Consensus       369 ~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~F  448 (823)
T PLN03192        369 QHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIF  448 (823)
T ss_pred             HHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCcceeeEEccCCCEe
Confidence            99999999999999999999999999999999999999999999999999999999999997766788899999999999


Q ss_pred             ehhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhhhhcccccccccccCCCCCCCCCchh
Q 038432          255 GEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVN  334 (602)
Q Consensus       255 Ge~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~  334 (602)
                      ||.+++.+.|+++++++.+.|+++.+++++|.++++.+|++...++++++++..+.+..+...++.+.+....++++.++
T Consensus       449 GE~~~l~~~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~~~~~l~~l~v~~ll~~~~~~~~~~~~~~~  528 (823)
T PLN03192        449 GEVGALCCRPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQHHKELHDLNVGDLLGDNGGEHDDPNMASN  528 (823)
T ss_pred             cchHHhcCCCCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHHHhhhhccccHHHHHhhcccccCCccchhH
Confidence            99999999999999999999999999999999999999999999999999999999998888888888777777788999


Q ss_pred             hhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccC
Q 038432          335 LLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNG  414 (602)
Q Consensus       335 L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g  414 (602)
                      ||.||..|+.++++.|++.|+|+|..|..|+||||+||..|+.+++++|+++|+|+|.+|                 .+|
T Consensus       529 L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d-----------------~~G  591 (823)
T PLN03192        529 LLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRD-----------------ANG  591 (823)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcC-----------------CCC
Confidence            999999999999999999999999999999999999999999999999999999999998                 999


Q ss_pred             CcHHHHHHHcCChhHHHHHHhcCCCCCCCCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHH
Q 038432          415 NTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMV  494 (602)
Q Consensus       415 ~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv  494 (602)
                      +||||+|+..|+.+++++|++.++..+...+.++||.|+..|+.++++.|+++|+|+|.+|.+|+||||+|+..|+.+++
T Consensus       592 ~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv  671 (823)
T PLN03192        592 NTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMV  671 (823)
T ss_pred             CCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHH
Confidence            99999999999999999999999988888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCcccCCCCC-CChhhHHHHHHHHhhhceeeeccCCCchhHHHhhhhhhhhhhhhcCCCCCCcceeEEEecCC
Q 038432          495 NFLVMNGSDVVGANKCE-FSSTNLNDMLQKREIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEGKSKGGNCQRVSIYRGH  573 (602)
Q Consensus       495 ~~Ll~~ga~~~~~d~~g-~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  573 (602)
                      ++|+++|||++..|..| .||++++......+..+.+...+..............................+++++++||
T Consensus       672 ~~Ll~~GAdv~~~~~~g~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  751 (823)
T PLN03192        672 RLLIMNGADVDKANTDDDFSPTELRELLQKRELGHSITIVDSVPADEPDLGRDGGSRPGRLQGTSSDNQCRPRVSIYKGH  751 (823)
T ss_pred             HHHHHcCCCCCCCCCCCCCCHHHHHHHHHHhhhCceeeeccCCCccccccccccccccccccccccccccCceEEEecCC
Confidence            99999999999999998 99999999988888777665554322222222222122222222334456667889999999


Q ss_pred             CcccccccccccCeEEeccccHHHHHhhC
Q 038432          574 PLVRKQACCMEAGRLIKLPNSLEELKKIA  602 (602)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  602 (602)
                      |+.++.++|.++++++++|.+++|||++|
T Consensus       752 p~~~~~~~~~~~g~~~~~~~~~~e~~~~~  780 (823)
T PLN03192        752 PLLRNERCCNEAGKLINLPPSLEELKAIA  780 (823)
T ss_pred             CcccccccccccCeEEeCCccHHHHHHHH
Confidence            99999999999999999999999999875

>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-57  Score=471.03  Aligned_cols=374  Identities=36%  Similarity=0.584  Sum_probs=320.5

Q ss_pred             HHHHHHHHHHHHHHHhhcCC--CCCC-cccccc-----CCC----CCCCchHHHHHHHHHHHHHHHhhcccCccccccch
Q 038432           15 DIILVHCAGCLYYLLADRYP--HKGE-TWLGSV-----NPN----FTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTV   82 (602)
Q Consensus        15 ~l~~~H~~aC~~~~~~~~~~--~~~~-~w~~~~-----~~~----~~~~~~~~~Y~~s~ywa~~t~~tvGygd~~~~~~~   82 (602)
                      .++++||.||+||+++....  ...+ +|+...     ..+    +...+++.+|++|+||+++||||+|||+.+|.+..
T Consensus       241 ~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~~~~~~~~~~~fg~~s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~  320 (727)
T KOG0498|consen  241 YLLASHWAGCIWYLIAIERPASCPRKATWLGSLGRLLSCYNLSFTFGIYSLALKYVYALYWGLSTLSTVGYGLVHANNMG  320 (727)
T ss_pred             HHHHHHHHHHHHHHHHhcccccCccccccccccccccccCcccccccchhHHHHHHHHHHHHhhHhhhccCCccCCCCcH
Confidence            67889999999999997665  3445 898752     233    66778899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHhhhHHHHHhhhhcCCCChhHHHHHHHHHHHHHHh-hcchhHHH
Q 038432           83 EMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKA-ESLNQHQL  161 (602)
Q Consensus        83 e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~ri~~y~~~~~~~-~~~~~~~~  161 (602)
                      |++|+|++|++|.++||++||+|.+++++.+.+..+|+.++.++++||++++||++||+||++|++|+|.. ++.+++++
T Consensus       321 E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~l  400 (727)
T KOG0498|consen  321 EKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEEL  400 (727)
T ss_pred             HHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998 79999999


Q ss_pred             HhhCCHHHHHHHHHHhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCc
Q 038432          162 IEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEK  241 (602)
Q Consensus       162 l~~lp~~l~~~v~~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~  241 (602)
                      +++||..||++|+.++|.++++++|+|+++|+.++.+|+..++..+|+|||+|++|||+.++||||.+|.+++...+++.
T Consensus       401 L~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~  480 (727)
T KOG0498|consen  401 LQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGG  480 (727)
T ss_pred             HHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             eeEEEEeCCCCeee-hhhhhcC-CCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHH---HHHhhhhhhccccc
Q 038432          242 EIAVGTLQTGDMFG-EVGALCC-RPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKN---FLQQHKKLKDLNIG  316 (602)
Q Consensus       242 ~~~~~~l~~g~~fG-e~~ll~~-~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~---ll~~~~~~~~~~~~  316 (602)
                      +.....|++||+|| |....+. .|.+.||++.+.|+++.|+.+++..+++.++.+...+++.   .+...-+.......
T Consensus       481 ~~~~~~L~~Gd~~GeEl~~~~~~~p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~i  560 (727)
T KOG0498|consen  481 FFVVAILGPGDFFGEELLTWCLDLPQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFI  560 (727)
T ss_pred             eEEEEEecCCCccchHHHHHHhcCCCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhH
Confidence            88999999999999 7777776 7889999999999999999999999999999999998883   33332222211000


Q ss_pred             c-----cccccCCCCCCCCCchhh--hHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccC
Q 038432          317 D-----LIAESGEEDGDPNMSVNL--LTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN  389 (602)
Q Consensus       317 ~-----~l~~~~~~~~~~~g~t~L--~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~  389 (602)
                      +     .....+..      .-+.  -.++..++..-....+..+...+..+.+|.+|+|.++..|...+...++.++++
T Consensus       561 q~a~r~~~~~~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  634 (727)
T KOG0498|consen  561 QAAWRRHIKRKGEE------ELALEEEESAIRGDDRGSKSLLRAGILASRFAANGRPPLHTAASRGSSDCALLLLQKPAD  634 (727)
T ss_pred             HHHHHHHHHhhccc------hhhhhcchhhhccccccchhhhhcccccccccccCCCccccccccCccccccccCCCCCC
Confidence            0     00000000      0001  112222222233455667778888899999999999999999999999999999


Q ss_pred             CCchh
Q 038432          390 VHLRD  394 (602)
Q Consensus       390 ~~~~~  394 (602)
                      ++..+
T Consensus       635 p~f~~  639 (727)
T KOG0498|consen  635 PDFSD  639 (727)
T ss_pred             CCccc
Confidence            99886

>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=9.6e-49  Score=376.41  Aligned_cols=285  Identities=22%  Similarity=0.432  Sum_probs=263.0

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCC-----CchHHHHHHHHHHHHHHHhhcccCccccccchhHHHHHH
Q 038432           15 DIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTE-----TSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIF   89 (602)
Q Consensus        15 ~l~~~H~~aC~~~~~~~~~~~~~~~w~~~~~~~~~~-----~~~~~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~   89 (602)
                      .++++||.||+||+++...+...++|......+-.-     ..+..+|+.|+||+..||||+| -...|.+..|.+|.++
T Consensus       137 ~~ilfHWNaClYf~iS~~~g~~~d~wvY~~i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~  215 (536)
T KOG0500|consen  137 CLILFHWNACLYFLISKAIGFTTDDWVYPKINDPEFATCDAGNLTREYLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIV  215 (536)
T ss_pred             HHHHHHHhhHHHHhhhHhcCccccccccCCccCccccccchhHHHHHHHHHHHHHhhhhhhcc-CCCCCCcCchhhHHHH
Confidence            889999999999999998888888899753222222     3378999999999999999999 4578999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHhHHHHhhhHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhc-chhHHHHhhCCHH
Q 038432           90 YMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAES-LNQHQLIEQLPKS  168 (602)
Q Consensus        90 ~~~~g~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~ri~~y~~~~~~~~~-~~~~~~l~~lp~~  168 (602)
                      -.++|+++||.++|++++++.+++....+|+++|+.+++||+.+++|+.++.||.+|+.|.|.+++ .+++++++.||+.
T Consensus       216 d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~k  295 (536)
T KOG0500|consen  216 DTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDK  295 (536)
T ss_pred             HHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHH
Confidence            999999999999999999999999999999999999999999999999999999999999999854 6899999999999


Q ss_pred             HHHHHHHHhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEe
Q 038432          169 ICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTL  248 (602)
Q Consensus       169 l~~~v~~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l  248 (602)
                      |+.+++.+++.+.|+++++|+++.+.++.+++..++++.|.|||+|++.||.+.+||+|.+|.+++...++.  .+...+
T Consensus       296 L~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dDg~--t~~~~L  373 (536)
T KOG0500|consen  296 LKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADDGV--TVFVTL  373 (536)
T ss_pred             HHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEecCCc--EEEEEe
Confidence            999999999999999999999999999999999999999999999999999999999999999999976653  567789


Q ss_pred             CCCCeeehhhhhc------CCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHH
Q 038432          249 QTGDMFGEVGALC------CRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKN  302 (602)
Q Consensus       249 ~~g~~fGe~~ll~------~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~  302 (602)
                      ++|++|||++++.      |.+|++++++.++++++.++++++.+.+.++|+....+..+
T Consensus       374 ~~G~~FGEisIlni~g~~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~~k  433 (536)
T KOG0500|consen  374 KAGSVFGEISILNIKGNKNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLEEK  433 (536)
T ss_pred             cCCceeeeeEEEEEcCcccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHHHH
Confidence            9999999998875      45789999999999999999999999999999998777654

>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-42  Score=336.93  Aligned_cols=293  Identities=18%  Similarity=0.351  Sum_probs=271.1

Q ss_pred             CcchhhhhhhHHHH------------------------HHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCCchHHH
Q 038432            1 MIGLANLHQDVRFC------------------------DIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIR   56 (602)
Q Consensus         1 ~~~~~~~~~~i~~~------------------------~l~~~H~~aC~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~   56 (602)
                      |.|+-|..|+-.|+                        +++++|+.||+||+.+.+++.+.+.|+....        ...
T Consensus       332 ~wR~~R~lK~~sF~e~~~~Le~i~s~~y~~RV~rT~~YmlyilHinacvYY~~SayqglG~~rWVydg~--------Gn~  403 (815)
T KOG0499|consen  332 MWRANRMLKYTSFFEFNHHLESIMSKAYIYRVIRTTGYLLYILHINACVYYWASAYQGLGTTRWVYDGE--------GNE  403 (815)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhhhHHHHHHHHhhcccccceeEEcCC--------CCc
Confidence            45777777777775                        9999999999999999998889999997632        237


Q ss_pred             HHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHhhhHHHHHhhhhcCCCC
Q 038432           57 YISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLP  136 (602)
Q Consensus        57 Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~l~  136 (602)
                      |++|+|||+-|++|+| |...|++..|.+|..+--++|++.|+.+||.|-.++...+..+..|++.|+..-.||++.+||
T Consensus       404 YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~  482 (815)
T KOG0499|consen  404 YIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIP  482 (815)
T ss_pred             eeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCc
Confidence            9999999999999999 899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhh-cchhHHHHhhCCHHHHHHHHHHhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEE
Q 038432          137 PRLKKQILAYMCLRFKAE-SLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVI  215 (602)
Q Consensus       137 ~~l~~ri~~y~~~~~~~~-~~~~~~~l~~lp~~l~~~v~~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~  215 (602)
                      .+++.||+.||+|.|.++ ..|+.++++.||..||.++...++...++++.+|++|+...+..+...++...|.|||.|+
T Consensus       483 kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVC  562 (815)
T KOG0499|consen  483 KEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVC  562 (815)
T ss_pred             HHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheeeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceee
Confidence            999999999999999885 5899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehhhhhc---CCCceeEEEEcceeEEEEeeHHHHHHHHHhC
Q 038432          216 MQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALC---CRPQIYTYRTKTLSQLLRLKTSALIEAMQSK  292 (602)
Q Consensus       216 ~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~~ll~---~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~  292 (602)
                      +.|+.+.+||+|..|+|.|....+ ++.++.+|.+|+.|||++++.   +.+|+++++|.+++.++++++.++.+++..+
T Consensus       563 kKGeiGkEMYIIk~GqvQVlGGp~-~~~Vl~tL~~GsVFGEISLLaigG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~Y  641 (815)
T KOG0499|consen  563 KKGEIGKEMYIIKHGQVQVLGGPD-GTKVLVTLKAGSVFGEISLLAIGGGNRRTANVVAHGFANLFVLDKKDLNEILVHY  641 (815)
T ss_pred             ecccccceeEEeecceEEEecCCC-CCEEEEEecccceeeeeeeeeecCCCccchhhhhcccceeeEecHhHHHHHHHhC
Confidence            999999999999999999997554 567899999999999999876   4577899999999999999999999999999


Q ss_pred             hHHHHHHHHHH
Q 038432          293 QEDNVSILKNF  303 (602)
Q Consensus       293 ~~~~~~il~~l  303 (602)
                      |+....+.+..
T Consensus       642 P~sq~iLrkkA  652 (815)
T KOG0499|consen  642 PDSQRILRKKA  652 (815)
T ss_pred             ccHHHHHHHHH
Confidence            98765555543

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.2e-39  Score=268.10  Aligned_cols=175  Identities=27%  Similarity=0.345  Sum_probs=167.9

Q ss_pred             CCCCCchhhhHhhhcCcHHHHHHHHh-cCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhc-ccCCCchhhHHHHhccch
Q 038432          327 GDPNMSVNLLTVASTGNAAFLDELLK-ARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKH-ASNVHLRDYIIFMYNLSY  404 (602)
Q Consensus       327 ~~~~g~t~L~~A~~~g~~~~~~~Ll~-~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~  404 (602)
                      .+.+|+||||+||..|+.+++.+|++ .+..+|.+|..|+||||.||..|+.++|+-|+.+ |+|+|..+          
T Consensus        34 ~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~t----------  103 (226)
T KOG4412|consen   34 DDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATT----------  103 (226)
T ss_pred             ccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceec----------
Confidence            46689999999999999999999995 6889999999999999999999999999999998 99999998          


Q ss_pred             hHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHH
Q 038432          405 DIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAI  482 (602)
Q Consensus       405 ~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpL  482 (602)
                             +.|.||||||+..|+.+++++|+++|+.++.  ..|.||||-|+.-|+.+++++|+..|+.+|.+|+.|+|||
T Consensus       104 -------n~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL  176 (226)
T KOG4412|consen  104 -------NGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPL  176 (226)
T ss_pred             -------CCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHH
Confidence                   9999999999999999999999999998887  8899999999999999999999999999999999999999


Q ss_pred             HHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHH
Q 038432          483 EIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLND  519 (602)
Q Consensus       483 h~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~  519 (602)
                      |.|...|+.+...+|+++|||++..|+.| ||+..|+
T Consensus       177 ~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  177 HHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIAC  212 (226)
T ss_pred             HHHHhccCchHHHHHHHhccceeeccccC-chHHHHH
Confidence            99999999999999999999999999999 9988875

>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.2e-38  Score=310.28  Aligned_cols=285  Identities=22%  Similarity=0.368  Sum_probs=254.0

Q ss_pred             HHHHHHHHHHHHHHHhhcCC-------CCCCccccccCCCC---------------CCCchHHHHHHHHHHHHHHHhhcc
Q 038432           15 DIILVHCAGCLYYLLADRYP-------HKGETWLGSVNPNF---------------TETSLWIRYISAMYWSITTMTTVG   72 (602)
Q Consensus        15 ~l~~~H~~aC~~~~~~~~~~-------~~~~~w~~~~~~~~---------------~~~~~~~~Y~~s~ywa~~t~~tvG   72 (602)
                      ..+.+||+||+||.++++.-       ..+++|+.....++               ...+.-..|+.|+||+++.|||||
T Consensus       360 y~lvAHWlACiWysIGd~ev~~~~~n~i~~dsWL~kLa~~~~tpY~~~~s~~~~~~gGPSr~S~YissLYfTMt~mttvG  439 (971)
T KOG0501|consen  360 YGLVAHWLACIWYSIGDYEVRDEMDNTIQPDSWLWKLANDIGTPYNYNLSNKGTLVGGPSRTSAYISSLYFTMTCMTTVG  439 (971)
T ss_pred             HHHHHHHHHHhheeccchheecccccccccchHHHHHHhhcCCCceeccCCCceeecCCcccceehhhhhhhhhhhhccc
Confidence            45678999999999998532       14568874322111               113345689999999999999999


Q ss_pred             cCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHhhhHHHHHhhhhcCCCChhHHHHHHHHHHHHHH
Q 038432           73 YGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFK  152 (602)
Q Consensus        73 ygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~ri~~y~~~~~~  152 (602)
                      +|.+.|.|..|++|++.+|++|.++||.++|.+..+++++.+...+|++.+..+.+||+-..+|+.|.+||.+|.-..|.
T Consensus       440 FGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWa  519 (971)
T KOG0501|consen  440 FGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWA  519 (971)
T ss_pred             ccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             h-hcchhHHHHhhCCHHHHHHHHHHhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeE
Q 038432          153 A-ESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGE  231 (602)
Q Consensus       153 ~-~~~~~~~~l~~lp~~l~~~v~~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~  231 (602)
                      . ++++.+.++...|..++.+++-++.++....+|-|+-.|+.+++.|+..++..+..|||.++..|+..+.+.||++|+
T Consensus       520 MtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGS  599 (971)
T KOG0501|consen  520 MTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGS  599 (971)
T ss_pred             hhcCcCHHHHhhhCccccccceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecc
Confidence            7 789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeccCceeEEEEeCCCCeeehhhhhcC--CCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHH
Q 038432          232 VEMIDYEMEKEIAVGTLQTGDMFGEVGALCC--RPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNF  303 (602)
Q Consensus       232 v~i~~~~~~~~~~~~~l~~g~~fGe~~ll~~--~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l  303 (602)
                      +++.+.+    .+++.+++||.||+...=..  ....+.++|.++|++..|.++.+.+++.-+......+-+++
T Consensus       600 LEVIQDD----EVVAILGKGDVFGD~FWK~~t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaRNl  669 (971)
T KOG0501|consen  600 LEVIQDD----EVVAILGKGDVFGDEFWKENTLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFARNL  669 (971)
T ss_pred             eEEeecC----cEEEEeecCccchhHHhhhhhhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhhce
Confidence            9999744    48999999999998743222  22357899999999999999999999998888877776654

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.9e-38  Score=264.05  Aligned_cols=187  Identities=21%  Similarity=0.264  Sum_probs=170.8

Q ss_pred             CchhhhHhhhcCcHHHHHHHHhcCC-CCCCCCC-CCchHHHHHHhcCChHHHHHHHh-cccCCCchhhHHHHhccchhHH
Q 038432          331 MSVNLLTVASTGNAAFLDELLKARL-DPDIGDS-KGRTPLHIAASKGHEECVLVLLK-HASNVHLRDYIIFMYNLSYDII  407 (602)
Q Consensus       331 g~t~L~~A~~~g~~~~~~~Ll~~g~-~~n~~d~-~g~t~Lh~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~~~~~~~~~~  407 (602)
                      +.++.+.+|......-++.+++... .+|.++. +|+|||||||+.|+.++|.+|++ .+..+|.+|             
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkD-------------   69 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKD-------------   69 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCcc-------------
Confidence            3567888888888888899998765 6788866 99999999999999999999995 588888887             


Q ss_pred             HHhhccCCcHHHHHHHcCChhHHHHHHhc-CCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHH
Q 038432          408 ILLDMNGNTALWEAISSKHHSIFRILYHC-TAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEI  484 (602)
Q Consensus       408 ~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~-g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~  484 (602)
                          ..||||||+|+..|+.++|+.|+.+ |+|+|.  ..|.||||+|+..|+.+++++|+++|+.++.+|..|.||||.
T Consensus        70 ----daGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHR  145 (226)
T KOG4412|consen   70 ----DAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHR  145 (226)
T ss_pred             ----ccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHH
Confidence                9999999999999999999999998 999998  889999999999999999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432          485 AMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD  534 (602)
Q Consensus       485 A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~  534 (602)
                      |+..|+.+++++|+..||.+|.+|+.|+||||.|...++.+++..|+.++
T Consensus       146 AAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~g  195 (226)
T KOG4412|consen  146 AAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAG  195 (226)
T ss_pred             HHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhc
Confidence            99999999999999999999999999999999997777766666665555

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.2e-37  Score=295.38  Aligned_cols=209  Identities=19%  Similarity=0.131  Sum_probs=183.0

Q ss_pred             hhhcccccccccccCCCCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhccc
Q 038432          309 KLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHAS  388 (602)
Q Consensus       309 ~~~~~~~~~~l~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~  388 (602)
                      ..+..+..++|.+.+++.++.+|.||||+|+..|+.++++.|++.|++++..+  |.||||+|+..|+.++|++|+++|+
T Consensus         8 ~~~~~~~~~~Lis~~a~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Ga   85 (284)
T PHA02791          8 TWKSKQLKSFLSSKDAFKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGM   85 (284)
T ss_pred             ccCHHHHHHHHHhCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCC
Confidence            34555666677777777788889999999999999999999999999988764  6899999999999999999999999


Q ss_pred             CCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCc-chhHHHHHhcCCHHHHHHHH
Q 038432          389 NVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTA-GDLLCTAEKRNDMSVMEELV  465 (602)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g-~t~L~~A~~~~~~~~~~~Ll  465 (602)
                      +++..|                 ..|.||||+|+..|+.+++++|+++|++++.  ..| .||||+|+..|+.+++++|+
T Consensus        86 dvn~~d-----------------~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL  148 (284)
T PHA02791         86 DDSQFD-----------------DKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL  148 (284)
T ss_pred             CCCCCC-----------------CCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHH
Confidence            999888                 8999999999999999999999999999876  445 48999999999999999999


Q ss_pred             HcCCCCCCCC-CCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCCh-hhHHHHHHHHhhhceeeeccCCCc
Q 038432          466 KYGLNVDSKD-RHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSS-TNLNDMLQKREIGHRITVHDDNST  538 (602)
Q Consensus       466 ~~ga~~n~~d-~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~-l~~a~~~~~~~~~~~l~~~~~~~~  538 (602)
                      ++|++.  .| ..|.||||+|+..|+.+++++|+++|||++.+|..|.|| ||+|+..++.++++.|+.++++..
T Consensus       149 ~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in  221 (284)
T PHA02791        149 SEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIY  221 (284)
T ss_pred             hcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCc
Confidence            987654  23 358999999999999999999999999999999999987 999999999999999998886554

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.9e-36  Score=288.68  Aligned_cols=209  Identities=16%  Similarity=0.145  Sum_probs=187.1

Q ss_pred             HHHHhhhhhhcccccccccccCCCCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHH
Q 038432          302 NFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVL  381 (602)
Q Consensus       302 ~ll~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~  381 (602)
                      ..+..+...+..++.+.|++.+++....+|.||||+|+..|+.++++.|++.|+++|.+|..|+||||+|+..|+.++++
T Consensus        32 TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk  111 (284)
T PHA02791         32 SALYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVK  111 (284)
T ss_pred             cHHHHHHHcCCHHHHHHHHHCcCCCcCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            45666777788888888888887665556899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcccCCCchhhHHHHhccchhHHHHhhccCC-cHHHHHHHcCChhHHHHHHhcCCCCCC-CCcchhHHHHHhcCCHH
Q 038432          382 VLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGN-TALWEAISSKHHSIFRILYHCTAISDP-YTAGDLLCTAEKRNDMS  459 (602)
Q Consensus       382 ~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~-tpLh~A~~~~~~~~~~~Ll~~g~~~~~-~~g~t~L~~A~~~~~~~  459 (602)
                      +|+++|++++..+                 ..|+ ||||+|+..|+.+++++|++++++... ..|.||||+|+..|+.+
T Consensus       112 ~Ll~~gadin~~~-----------------~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~e  174 (284)
T PHA02791        112 LFVKKNWRLMFYG-----------------KTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVD  174 (284)
T ss_pred             HHHHCCCCcCccC-----------------CCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCccHHHHHHHcCCHH
Confidence            9999999999887                 7774 899999999999999999999876533 46899999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCcCH-HHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432          460 VMEELVKYGLNVDSKDRHGRTA-IEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD  534 (602)
Q Consensus       460 ~~~~Ll~~ga~~n~~d~~g~Tp-Lh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~  534 (602)
                      ++++|+++|+++|.+|..|.|| ||+|+..|+.++|++|+++|||++.+|..| |||+.|      |++++|+++-
T Consensus       175 iv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l~~~------e~~~~ll~~~  243 (284)
T PHA02791        175 MMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLLDDA------EIAKMIIEKH  243 (284)
T ss_pred             HHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccCCCH------HHHHHHHHhh
Confidence            9999999999999999999987 999999999999999999999999999955 888554      6666666554

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.6e-34  Score=295.68  Aligned_cols=220  Identities=19%  Similarity=0.121  Sum_probs=201.4

Q ss_pred             HHHhhhhhhcccccccccccCCCC--CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHH
Q 038432          303 FLQQHKKLKDLNIGDLIAESGEED--GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECV  380 (602)
Q Consensus       303 ll~~~~~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v  380 (602)
                      .+..+...++.+..+.|++.+++.  .+.+|.||||+|+..|+.+++++|++.|++++..+..|.||||.|+..|+.+++
T Consensus         5 ~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v   84 (413)
T PHA02875          5 ALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAV   84 (413)
T ss_pred             HHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHH
Confidence            455667777888888888887654  566899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCH
Q 038432          381 LVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDM  458 (602)
Q Consensus       381 ~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~  458 (602)
                      ++|++.|++.+...                +..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..|+.
T Consensus        85 ~~Ll~~~~~~~~~~----------------~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~  148 (413)
T PHA02875         85 EELLDLGKFADDVF----------------YKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDI  148 (413)
T ss_pred             HHHHHcCCcccccc----------------cCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            99999998775432                37899999999999999999999999999987  7899999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCC-ChhhHHHHHHHHhhhceeeeccCCC
Q 038432          459 SVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEF-SSTNLNDMLQKREIGHRITVHDDNS  537 (602)
Q Consensus       459 ~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~-t~l~~a~~~~~~~~~~~l~~~~~~~  537 (602)
                      +++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|. ||+|+|+..++.++++.|+.++++.
T Consensus       149 ~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~  228 (413)
T PHA02875        149 KGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADC  228 (413)
T ss_pred             HHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCc
Confidence            999999999999999999999999999999999999999999999999999885 8899999999999999999998765


Q ss_pred             c
Q 038432          538 T  538 (602)
Q Consensus       538 ~  538 (602)
                      .
T Consensus       229 n  229 (413)
T PHA02875        229 N  229 (413)
T ss_pred             c
Confidence            4

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=6.9e-34  Score=294.37  Aligned_cols=245  Identities=17%  Similarity=0.206  Sum_probs=199.9

Q ss_pred             ccccccccccCCCC--CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcC--ChHHHHHHHhccc
Q 038432          313 LNIGDLIAESGEED--GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKG--HEECVLVLLKHAS  388 (602)
Q Consensus       313 ~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g--~~~~v~~Ll~~g~  388 (602)
                      .+..+.|++.++++  ++.+|.||||+|+..|+.++++.|+++|+++|.+|.+|+||||+|+..+  ..+++++|+++|+
T Consensus        52 ~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Ga  131 (446)
T PHA02946         52 ERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGA  131 (446)
T ss_pred             HHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCC
Confidence            35667777777654  7888999999999999999999999999999999999999999998876  4799999999999


Q ss_pred             CCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcC--CHHHHHHH
Q 038432          389 NVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRN--DMSVMEEL  464 (602)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~--~~~~~~~L  464 (602)
                      +++...                |..|.|||| |+..|+.+++++|+++|++++.  ..|+||||.|+..+  +.+++++|
T Consensus       132 din~~~----------------d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~L  194 (446)
T PHA02946        132 KINNSV----------------DEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWM  194 (446)
T ss_pred             Cccccc----------------CCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHH
Confidence            999642                289999998 6677999999999999999987  78999999988755  46899999


Q ss_pred             HHcCCCCCCCCCCCcCHHHHHHHcC--cHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHH-HhhhceeeeccCCCchhH
Q 038432          465 VKYGLNVDSKDRHGRTAIEIAMAEN--NVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQK-REIGHRITVHDDNSTQNE  541 (602)
Q Consensus       465 l~~ga~~n~~d~~g~TpLh~A~~~~--~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~-~~~~~~l~~~~~~~~~~~  541 (602)
                      +++|+++|.+|.+|+||||+|+..+  +.+++++|++ |+|++.+|..|.||||+|+..++ .++++.|+.++.......
T Consensus       195 l~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~  273 (446)
T PHA02946        195 MKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQT  273 (446)
T ss_pred             HHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcH
Confidence            9999999999999999999999986  8899999995 99999999999999999999877 478888877764332211


Q ss_pred             HHhh----hhhhhhhhhhcCCCCCCcceeEEEecCCCc
Q 038432          542 VLLK----KLEIIDFEAKEGKSKGGNCQRVSIYRGHPL  575 (602)
Q Consensus       542 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  575 (602)
                      ....    .-...+.....+...+.++.+.++..||..
T Consensus       274 ~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~e  311 (446)
T PHA02946        274 VNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIR  311 (446)
T ss_pred             HHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHH
Confidence            1000    000111222334455678888888888743

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.1e-33  Score=298.79  Aligned_cols=216  Identities=20%  Similarity=0.245  Sum_probs=198.6

Q ss_pred             hhhhhcccccccccccCCCC--CCCCCchhhhHhh--hcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcC--ChHHH
Q 038432          307 HKKLKDLNIGDLIAESGEED--GDPNMSVNLLTVA--STGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKG--HEECV  380 (602)
Q Consensus       307 ~~~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~--~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g--~~~~v  380 (602)
                      +...+..+..+.|.+.+++.  .+..|.||||+|+  ..|+.++++.|++.|++++..+..|.||||+|+..|  +.+++
T Consensus        80 a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv  159 (480)
T PHA03100         80 YNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKIL  159 (480)
T ss_pred             HHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHH
Confidence            45556666777777777654  6677899999999  999999999999999999999999999999999999  99999


Q ss_pred             HHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCc------chhHHHH
Q 038432          381 LVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTA------GDLLCTA  452 (602)
Q Consensus       381 ~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g------~t~L~~A  452 (602)
                      ++|+++|++++..+                 ..|.||||+|+..|+.+++++|+++|++++.  ..|      .||||.|
T Consensus       160 ~~Ll~~g~din~~d-----------------~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a  222 (480)
T PHA03100        160 KLLIDKGVDINAKN-----------------RYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIA  222 (480)
T ss_pred             HHHHHCCCCccccc-----------------CCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHH
Confidence            99999999999887                 8999999999999999999999999999987  455      8999999


Q ss_pred             HhcCC--HHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhcee
Q 038432          453 EKRND--MSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRI  530 (602)
Q Consensus       453 ~~~~~--~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l  530 (602)
                      +..|+  .+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|||++.+|..|.||+++|+..++.++++.+
T Consensus       223 ~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~L  302 (480)
T PHA03100        223 ACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLL  302 (480)
T ss_pred             HHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHH
Confidence            99999  9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeccCCCch
Q 038432          531 TVHDDNSTQ  539 (602)
Q Consensus       531 ~~~~~~~~~  539 (602)
                      +.++++...
T Consensus       303 l~~g~~i~~  311 (480)
T PHA03100        303 LNNGPSIKT  311 (480)
T ss_pred             HhcCCCHHH
Confidence            999875553

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=1.5e-33  Score=281.32  Aligned_cols=196  Identities=25%  Similarity=0.263  Sum_probs=178.2

Q ss_pred             hhhccccccccccc-C--CCCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCC-CCCchHHHHHHhcCChHHHHHHH
Q 038432          309 KLKDLNIGDLIAES-G--EEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGD-SKGRTPLHIAASKGHEECVLVLL  384 (602)
Q Consensus       309 ~~~~~~~~~~l~~~-~--~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d-~~g~t~Lh~A~~~g~~~~v~~Ll  384 (602)
                      +.++.+..+.+.+. +  .+..|.+|.|+||+||.+|+++++++|+++|+++|..+ .-|.||||||+++|+..+|++|+
T Consensus        53 q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLl  132 (600)
T KOG0509|consen   53 QYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLL  132 (600)
T ss_pred             hcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHH
Confidence            33444444444444 3  23356789999999999999999999999999999997 77899999999999999999999


Q ss_pred             hcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHH
Q 038432          385 KHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVME  462 (602)
Q Consensus       385 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~  462 (602)
                      ++|||++.+|                 .+|.||||.|++.|+.-++-+|+.+|+|+|.  .+|+||||+|+..|....+.
T Consensus       133 qhGAdpt~~D-----------------~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~  195 (600)
T KOG0509|consen  133 QHGADPTLKD-----------------KQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVR  195 (600)
T ss_pred             HcCCCCceec-----------------CCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHH
Confidence            9999999998                 9999999999999999999999999999988  89999999999999988899


Q ss_pred             HHHHcCCCCCCCC-CCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHH
Q 038432          463 ELVKYGLNVDSKD-RHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDML  521 (602)
Q Consensus       463 ~Ll~~ga~~n~~d-~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~  521 (602)
                      .|++.|++++.+| .+|+||||+|+..|+.+++++|++.|++.+.+|.+|.||+++|...
T Consensus       196 ~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  196 RLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            9999999999988 8999999999999999999977788999999999999999999776

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.3e-32  Score=291.52  Aligned_cols=212  Identities=21%  Similarity=0.213  Sum_probs=190.4

Q ss_pred             hhcccccccccccCCCC--CCCCCchhhhHhhhc-----CcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcC---ChHH
Q 038432          310 LKDLNIGDLIAESGEED--GDPNMSVNLLTVAST-----GNAAFLDELLKARLDPDIGDSKGRTPLHIAASKG---HEEC  379 (602)
Q Consensus       310 ~~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~-----g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g---~~~~  379 (602)
                      ....++.+.|++.|+++  .+..|.||||.|+.+     +..++++.|+++|+|+|.+|..|+||||+|+..+   +.++
T Consensus        48 ~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~i  127 (489)
T PHA02798         48 SPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEI  127 (489)
T ss_pred             CCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHH
Confidence            34677888999998766  678899999998864     6789999999999999999999999999999876   7899


Q ss_pred             HHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCC---hhHHHHHHhcCCCCCC---CCcchhHHHHH
Q 038432          380 VLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKH---HSIFRILYHCTAISDP---YTAGDLLCTAE  453 (602)
Q Consensus       380 v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~---~~~~~~Ll~~g~~~~~---~~g~t~L~~A~  453 (602)
                      +++|+++|+|++..|                 ..|.||||+|+..|+   .+++++|+++|++++.   ..|.||||.++
T Consensus       128 v~~Ll~~Gadvn~~d-----------------~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~  190 (489)
T PHA02798        128 LLFMIENGADTTLLD-----------------KDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYF  190 (489)
T ss_pred             HHHHHHcCCCccccC-----------------CCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHH
Confidence            999999999999998                 999999999999988   9999999999999986   46789999987


Q ss_pred             hc----CCHHHHHHHHHcCCC---------------------------------------CCCCCCCCcCHHHHHHHcCc
Q 038432          454 KR----NDMSVMEELVKYGLN---------------------------------------VDSKDRHGRTAIEIAMAENN  490 (602)
Q Consensus       454 ~~----~~~~~~~~Ll~~ga~---------------------------------------~n~~d~~g~TpLh~A~~~~~  490 (602)
                      ..    ++.+++++|+++|++                                       +|.+|..|+||||+|+..|+
T Consensus       191 ~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~  270 (489)
T PHA02798        191 KYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNN  270 (489)
T ss_pred             HhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCc
Confidence            64    478889998887764                                       45577789999999999999


Q ss_pred             HHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeeccCCCc
Q 038432          491 VEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNST  538 (602)
Q Consensus       491 ~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~  538 (602)
                      .+++++|+++|||++.+|..|.||||+|+..++.++++.+...+++..
T Consensus       271 ~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        271 RKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNKN  318 (489)
T ss_pred             HHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHH
Confidence            999999999999999999999999999999999999999988876555

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-32  Score=286.83  Aligned_cols=190  Identities=15%  Similarity=0.180  Sum_probs=181.8

Q ss_pred             CchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHh
Q 038432          331 MSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILL  410 (602)
Q Consensus       331 g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~  410 (602)
                      ++++||.|+..|+.+++++|++.|+++|..+..|.||||+|+..|+.+++++|+++|++++..+                
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~----------------   65 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKY----------------   65 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccC----------------
Confidence            4789999999999999999999999999999999999999999999999999999999999887                


Q ss_pred             hccCCcHHHHHHHcCChhHHHHHHhcCCCCCC---CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHH
Q 038432          411 DMNGNTALWEAISSKHHSIFRILYHCTAISDP---YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMA  487 (602)
Q Consensus       411 ~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~---~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~  487 (602)
                       ..|.||||.|+..|+.++++.|++.|++.+.   ..|.||||+|+..|+.+++++|+++|+|++.+|..|.||||+|+.
T Consensus        66 -~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~  144 (413)
T PHA02875         66 -PDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVM  144 (413)
T ss_pred             -CCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Confidence             8899999999999999999999999987654   679999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeeccCCC
Q 038432          488 ENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNS  537 (602)
Q Consensus       488 ~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~~~  537 (602)
                      .|+.+++++|+++|++++.+|..|.||||+|+..++.++++.|+..+++.
T Consensus       145 ~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~  194 (413)
T PHA02875        145 MGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANI  194 (413)
T ss_pred             cCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Confidence            99999999999999999999999999999999999999999998887644

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-32  Score=291.44  Aligned_cols=206  Identities=17%  Similarity=0.227  Sum_probs=171.5

Q ss_pred             CCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchh-------------
Q 038432          328 DPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD-------------  394 (602)
Q Consensus       328 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~-------------  394 (602)
                      +..+.||||.|+..|+.++++.|++.|+++|.+|..|+||||+||..|+.++++.|++.+.+.+...             
T Consensus        34 ~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~  113 (477)
T PHA02878         34 SLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRN  113 (477)
T ss_pred             cccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCC
Confidence            4457899999999999999999999999999999999999999999999998888887755443211             


Q ss_pred             --hHHHHhcc----------------------chhHHH----------Hhhcc-CCcHHHHHHHcCChhHHHHHHhcCCC
Q 038432          395 --YIIFMYNL----------------------SYDIII----------LLDMN-GNTALWEAISSKHHSIFRILYHCTAI  439 (602)
Q Consensus       395 --~~~~~~~~----------------------~~~~~~----------~~~~~-g~tpLh~A~~~~~~~~~~~Ll~~g~~  439 (602)
                        ....+...                      ..+++.          ..+.. |.||||+|+..|+.+++++|+++|++
T Consensus       114 ~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad  193 (477)
T PHA02878        114 VEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGAN  193 (477)
T ss_pred             HHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCC
Confidence              00000000                      011222          22455 99999999999999999999999999


Q ss_pred             CCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHc-CcHHHHHHHHHCCCCcccCCC-CCCChh
Q 038432          440 SDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAE-NNVEMVNFLVMNGSDVVGANK-CEFSST  515 (602)
Q Consensus       440 ~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~-~~~~iv~~Ll~~ga~~~~~d~-~g~t~l  515 (602)
                      ++.  ..|.||||.|+..|+.+++++|+++|+++|.+|..|+||||+|+.. ++.+++++|+++|+|++.++. .|.|||
T Consensus       194 ~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpL  273 (477)
T PHA02878        194 VNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTAL  273 (477)
T ss_pred             CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHH
Confidence            987  7899999999999999999999999999999999999999999976 789999999999999999987 799999


Q ss_pred             hHHHHHHHHhhhceeeeccC
Q 038432          516 NLNDMLQKREIGHRITVHDD  535 (602)
Q Consensus       516 ~~a~~~~~~~~~~~l~~~~~  535 (602)
                      |+|  .++.++++.|+..++
T Consensus       274 h~A--~~~~~~v~~Ll~~ga  291 (477)
T PHA02878        274 HSS--IKSERKLKLLLEYGA  291 (477)
T ss_pred             HHH--ccCHHHHHHHHHCCC
Confidence            999  455667777666654

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=6.1e-33  Score=281.83  Aligned_cols=228  Identities=18%  Similarity=0.219  Sum_probs=161.7

Q ss_pred             hhhhhcccccccccccCCCC--CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHH
Q 038432          307 HKKLKDLNIGDLIAESGEED--GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLL  384 (602)
Q Consensus       307 ~~~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll  384 (602)
                      +...+..+..+.|.+.+.++  .+.+|.||||.||..++.|..+.|++.|+++...|.+|.+|+|.|+..|..++.+..+
T Consensus       128 A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l  207 (929)
T KOG0510|consen  128 AADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFL  207 (929)
T ss_pred             ccccchHHHHHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhh
Confidence            33444444445555555433  5556666666666666666556666666666666666666666666666666666655


Q ss_pred             h-----cccCCCchh------hHHHHhccch-------------------------hHHHHhhccCCcHHHHHHHcCChh
Q 038432          385 K-----HASNVHLRD------YIIFMYNLSY-------------------------DIIILLDMNGNTALWEAISSKHHS  428 (602)
Q Consensus       385 ~-----~g~~~~~~~------~~~~~~~~~~-------------------------~~~~~~~~~g~tpLh~A~~~~~~~  428 (602)
                      .     ++..+|.-+      ...+...+++                         +.++..|++|.||||+|++.|+.+
T Consensus       208 ~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~  287 (929)
T KOG0510|consen  208 PEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPE  287 (929)
T ss_pred             ccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChh
Confidence            5     333333332      0111111111                         222334888999999999999999


Q ss_pred             HHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHH-cC-CCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCc
Q 038432          429 IFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVK-YG-LNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV  504 (602)
Q Consensus       429 ~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~-~g-a~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~  504 (602)
                      +++.|+..|++++.  .++.||||.||.+|+.++++.|++ .| ...|..|-.|+||||.|+.+||..++++|++.||+.
T Consensus       288 svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~  367 (929)
T KOG0510|consen  288 SVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALF  367 (929)
T ss_pred             HHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhh
Confidence            99999999998887  788899999999999999999988 44 567888889999999999999999999999999988


Q ss_pred             c---cCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432          505 V---GANKCEFSSTNLNDMLQKREIGHRITVHD  534 (602)
Q Consensus       505 ~---~~d~~g~t~l~~a~~~~~~~~~~~l~~~~  534 (602)
                      .   ..|.+|+||||+|+..|+...++.++.++
T Consensus       368 ~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~G  400 (929)
T KOG0510|consen  368 LNMSEADSDGNTALHLAAKYGNTSAVQKLISHG  400 (929)
T ss_pred             hcccccccCCchhhhHHHHhccHHHHHHHHHcC
Confidence            7   56889999999999998888888887777

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.5e-32  Score=288.80  Aligned_cols=200  Identities=21%  Similarity=0.273  Sum_probs=182.4

Q ss_pred             HHhhhhhhcccccccccccCCCC--CCCCCchhhhHhhhcCcHH------------------------------------
Q 038432          304 LQQHKKLKDLNIGDLIAESGEED--GDPNMSVNLLTVASTGNAA------------------------------------  345 (602)
Q Consensus       304 l~~~~~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g~~~------------------------------------  345 (602)
                      ++.+...++.+.++.|++.+++.  .+.+|.||||+||..|+.+                                    
T Consensus        41 Lh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~L  120 (477)
T PHA02878         41 LHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKII  120 (477)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHH
Confidence            66678888889999999888654  7788999999999765432                                    


Q ss_pred             ----------------------------HHHHHHhcCCCCCCCCCC-CchHHHHHHhcCChHHHHHHHhcccCCCchhhH
Q 038432          346 ----------------------------FLDELLKARLDPDIGDSK-GRTPLHIAASKGHEECVLVLLKHASNVHLRDYI  396 (602)
Q Consensus       346 ----------------------------~~~~Ll~~g~~~n~~d~~-g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~  396 (602)
                                                  +++.|++.|+++|..|.. |.||||+|+..|+.+++++|+++|++++..|  
T Consensus       121 l~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d--  198 (477)
T PHA02878        121 LTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPD--  198 (477)
T ss_pred             HhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcC--
Confidence                                        667777889999999988 9999999999999999999999999999998  


Q ss_pred             HHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhc-CCHHHHHHHHHcCCCCCC
Q 038432          397 IFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKR-NDMSVMEELVKYGLNVDS  473 (602)
Q Consensus       397 ~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~-~~~~~~~~Ll~~ga~~n~  473 (602)
                                     ..|.||||.|+..|+.+++++|+++|++++.  ..|.||||+|+.. ++.+++++|+++|+++|.
T Consensus       199 ---------------~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~  263 (477)
T PHA02878        199 ---------------KTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNA  263 (477)
T ss_pred             ---------------CCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCc
Confidence                           9999999999999999999999999999987  7899999999976 789999999999999999


Q ss_pred             CCC-CCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHH
Q 038432          474 KDR-HGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQ  522 (602)
Q Consensus       474 ~d~-~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~  522 (602)
                      ++. .|.||||+|  .++.+++++|+++|||++.+|..|.||||+|+..+
T Consensus       264 ~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~  311 (477)
T PHA02878        264 KSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQY  311 (477)
T ss_pred             cCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHc
Confidence            986 899999999  57889999999999999999999999999998743

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=3e-32  Score=289.29  Aligned_cols=227  Identities=18%  Similarity=0.214  Sum_probs=192.4

Q ss_pred             cccccccccccCCCC--CCCCCchhhhHhhhcC-cHHHHHHHHhcCCCCCCCCCCCchHHHHHH--hcCChHHHHHHHhc
Q 038432          312 DLNIGDLIAESGEED--GDPNMSVNLLTVASTG-NAAFLDELLKARLDPDIGDSKGRTPLHIAA--SKGHEECVLVLLKH  386 (602)
Q Consensus       312 ~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g-~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~--~~g~~~~v~~Ll~~  386 (602)
                      ..+..+.|++.+++.  ++..|.||||+|+..| ..++++.|++.|+++|.+|..|.||||+|+  ..++.+++++|+++
T Consensus        62 ~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~  141 (471)
T PHA03095         62 VKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRK  141 (471)
T ss_pred             hHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHc
Confidence            566677777777655  6678999999999999 599999999999999999999999999999  55688999999999


Q ss_pred             ccCCCchhh------HHHHhc--cchhHHHH----------hhccCCcHHHHHHHc--CChhHHHHHHhcCCCCCC--CC
Q 038432          387 ASNVHLRDY------IIFMYN--LSYDIIIL----------LDMNGNTALWEAISS--KHHSIFRILYHCTAISDP--YT  444 (602)
Q Consensus       387 g~~~~~~~~------~~~~~~--~~~~~~~~----------~~~~g~tpLh~A~~~--~~~~~~~~Ll~~g~~~~~--~~  444 (602)
                      |++++..|.      ..+...  .+.+++..          .|..|.||||+|+..  ++.++++.|+++|++++.  ..
T Consensus       142 gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~  221 (471)
T PHA03095        142 GADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDML  221 (471)
T ss_pred             CCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCC
Confidence            999988661      111111  12333322          267789999998875  678899999999999887  78


Q ss_pred             cchhHHHHHhcCCH--HHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHH
Q 038432          445 AGDLLCTAEKRNDM--SVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQ  522 (602)
Q Consensus       445 g~t~L~~A~~~~~~--~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~  522 (602)
                      |.||||+|+..|+.  .+++.|++.|+++|.+|..|+||||+|+..|+.+++++|+++|||++.+|.+|.||||+|+..+
T Consensus       222 g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~  301 (471)
T PHA03095        222 GNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNN  301 (471)
T ss_pred             CCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhC
Confidence            99999999999875  6888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhceeeeccCCCc
Q 038432          523 KREIGHRITVHDDNST  538 (602)
Q Consensus       523 ~~~~~~~l~~~~~~~~  538 (602)
                      +.++++.++..+++..
T Consensus       302 ~~~~v~~LL~~~~~~~  317 (471)
T PHA03095        302 NGRAVRAALAKNPSAE  317 (471)
T ss_pred             CHHHHHHHHHhCCCHH
Confidence            9999999998876554

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=7.8e-33  Score=276.26  Aligned_cols=186  Identities=18%  Similarity=0.171  Sum_probs=176.2

Q ss_pred             chhhhHhhhcCcHHHHHHHHhc-CCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHh
Q 038432          332 SVNLLTVASTGNAAFLDELLKA-RLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILL  410 (602)
Q Consensus       332 ~t~L~~A~~~g~~~~~~~Ll~~-g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~  410 (602)
                      ...++.|++.|.++.++.|++. |.++|..|++|.|+|||||.+++.+++++|+++||++|..+                
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~g----------------  108 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIG----------------  108 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccC----------------
Confidence            3568899999999999999998 99999999999999999999999999999999999999987                


Q ss_pred             hccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHc
Q 038432          411 DMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAE  488 (602)
Q Consensus       411 ~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~  488 (602)
                      ..-|.||||+|+++|+..+|++|+++|||++.  .+|.+|||.|+..|+...+-+|+.+|+|+|.+|.+|+||||+|+.+
T Consensus       109 G~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAayk  188 (600)
T KOG0509|consen  109 GVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYK  188 (600)
T ss_pred             CCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHh
Confidence            46788999999999999999999999999998  8899999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHCCCCcccCC-CCCCChhhHHHHHHHHhhhceeeec
Q 038432          489 NNVEMVNFLVMNGSDVVGAN-KCEFSSTNLNDMLQKREIGHRITVH  533 (602)
Q Consensus       489 ~~~~iv~~Ll~~ga~~~~~d-~~g~t~l~~a~~~~~~~~~~~l~~~  533 (602)
                      |+...+..|++.|+++..+| +.|+||||+|+..|+.+++..+.+.
T Consensus       189 g~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g  234 (600)
T KOG0509|consen  189 GFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEG  234 (600)
T ss_pred             cccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhc
Confidence            99988999999999999998 8999999999999999998844443

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3e-32  Score=284.84  Aligned_cols=187  Identities=18%  Similarity=0.244  Sum_probs=132.7

Q ss_pred             CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhH
Q 038432          327 GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDI  406 (602)
Q Consensus       327 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~  406 (602)
                      ++..|.||||+|+..|+.+++++|++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++..+            
T Consensus       120 ~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~------------  187 (434)
T PHA02874        120 KDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKD------------  187 (434)
T ss_pred             CCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCC------------
Confidence            34456666666666666666666666666666666666666666666666666666666666666655            


Q ss_pred             HHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHH
Q 038432          407 IILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEI  484 (602)
Q Consensus       407 ~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~  484 (602)
                           ..|.||||+|+..|+.+++++|+++|++++.  ..|.||||.|+..+. +++++|+ .|+++|.+|..|+||||+
T Consensus       188 -----~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~  260 (434)
T PHA02874        188 -----NNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHH  260 (434)
T ss_pred             -----CCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHH
Confidence                 6677777777777777777777777776655  567777777776654 3444444 567788888889999999


Q ss_pred             HHHcC-cHHHHHHHHHCCCCcccCCCCCCChhhHHHHHH-HHhhhceeee
Q 038432          485 AMAEN-NVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQ-KREIGHRITV  532 (602)
Q Consensus       485 A~~~~-~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~-~~~~~~~l~~  532 (602)
                      |+..+ +.+++++|+++|+|++.+|..|.||||+|+..+ ..++++.+..
T Consensus       261 A~~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~  310 (434)
T PHA02874        261 AINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIA  310 (434)
T ss_pred             HHhcCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHH
Confidence            98865 789999999999999999999999999998776 3444444443

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.7e-32  Score=291.72  Aligned_cols=217  Identities=19%  Similarity=0.236  Sum_probs=203.7

Q ss_pred             HHHHhhhhhhcccccccccccCCCC--CCCCCchhhhH-----hhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHH--
Q 038432          302 NFLQQHKKLKDLNIGDLIAESGEED--GDPNMSVNLLT-----VASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAA--  372 (602)
Q Consensus       302 ~ll~~~~~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~-----A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~--  372 (602)
                      ..+..+...+..+..+.|++.+++.  .+..+.||||.     |+..|+.++++.|++.|++++..|..|.||||+|+  
T Consensus        37 t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~  116 (480)
T PHA03100         37 LPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISK  116 (480)
T ss_pred             hhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhc
Confidence            4566677788888889999888655  56778999999     99999999999999999999999999999999999  


Q ss_pred             hcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcC--ChhHHHHHHhcCCCCCC--CCcchh
Q 038432          373 SKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSK--HHSIFRILYHCTAISDP--YTAGDL  448 (602)
Q Consensus       373 ~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~--~~~~~~~Ll~~g~~~~~--~~g~t~  448 (602)
                      ..|+.+++++|+++|++++..+                 ..|.||||+|+..|  +.+++++|+++|++++.  ..|.||
T Consensus       117 ~~~~~~iv~~Ll~~g~~~~~~~-----------------~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tp  179 (480)
T PHA03100        117 KSNSYSIVEYLLDNGANVNIKN-----------------SDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTP  179 (480)
T ss_pred             ccChHHHHHHHHHcCCCCCccC-----------------CCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCH
Confidence            9999999999999999999988                 99999999999999  99999999999999987  689999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCC------cCHHHHHHHcCc--HHHHHHHHHCCCCcccCCCCCCChhhHHHH
Q 038432          449 LCTAEKRNDMSVMEELVKYGLNVDSKDRHG------RTAIEIAMAENN--VEMVNFLVMNGSDVVGANKCEFSSTNLNDM  520 (602)
Q Consensus       449 L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g------~TpLh~A~~~~~--~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~  520 (602)
                      ||+|+..|+.+++++|+++|++++..+..|      .||||.|+..|+  .+++++|+++|++++.+|..|.||||+|+.
T Consensus       180 L~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~  259 (480)
T PHA03100        180 LHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVY  259 (480)
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            999999999999999999999999999999      999999999999  999999999999999999999999999999


Q ss_pred             HHHHhhhceeeeccC
Q 038432          521 LQKREIGHRITVHDD  535 (602)
Q Consensus       521 ~~~~~~~~~l~~~~~  535 (602)
                      .++.++++.|+..++
T Consensus       260 ~~~~~iv~~Ll~~ga  274 (480)
T PHA03100        260 NNNPEFVKYLLDLGA  274 (480)
T ss_pred             cCCHHHHHHHHHcCC
Confidence            999999998888774

>PHA02859 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.6e-32  Score=250.89  Aligned_cols=175  Identities=17%  Similarity=0.198  Sum_probs=158.3

Q ss_pred             CCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcC--ChHHHHHHHhcccCCCchhhHHHHhccchhH
Q 038432          329 PNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKG--HEECVLVLLKHASNVHLRDYIIFMYNLSYDI  406 (602)
Q Consensus       329 ~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g--~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~  406 (602)
                      ..+.||||.|+..|+.+.++.|++.   +|..|..|.||||+|+..+  +.+++++|+++|+++|..+            
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~------------   83 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKT------------   83 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccC------------
Confidence            4568999999999999999999975   5678899999999999854  8999999999999999886            


Q ss_pred             HHHhhccCCcHHHHHHHc---CChhHHHHHHhcCCCCCC--CCcchhHHHHHh--cCCHHHHHHHHHcCCCCCCCCCCCc
Q 038432          407 IILLDMNGNTALWEAISS---KHHSIFRILYHCTAISDP--YTAGDLLCTAEK--RNDMSVMEELVKYGLNVDSKDRHGR  479 (602)
Q Consensus       407 ~~~~~~~g~tpLh~A~~~---~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~--~~~~~~~~~Ll~~ga~~n~~d~~g~  479 (602)
                          +..|.||||+|+..   ++.+++++|+++|++++.  ..|.||||.|+.  .++.+++++|+++|+++|.+|.+|.
T Consensus        84 ----~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~  159 (209)
T PHA02859         84 ----RDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNN  159 (209)
T ss_pred             ----CCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCC
Confidence                24799999998764   479999999999999998  789999999876  4689999999999999999999999


Q ss_pred             CHHHH-HHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHH
Q 038432          480 TAIEI-AMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQ  522 (602)
Q Consensus       480 TpLh~-A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~  522 (602)
                      ||||. |+..++.+++++|+++|+|++.+|..|.||+|+|...+
T Consensus       160 t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        160 NILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             cHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            99996 56788999999999999999999999999999997653

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.2e-32  Score=282.46  Aligned_cols=217  Identities=16%  Similarity=0.185  Sum_probs=181.6

Q ss_pred             hhhhcccccccccccC---CCCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHH
Q 038432          308 KKLKDLNIGDLIAESG---EEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLL  384 (602)
Q Consensus       308 ~~~~~~~~~~~l~~~~---~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll  384 (602)
                      ...++.+..+.+.+..   .+..+.+|.||||.|+..|+.+++++|++.|+++|..+..|.||||.|+..|+.+++++|+
T Consensus         9 i~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll   88 (434)
T PHA02874          9 IYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLI   88 (434)
T ss_pred             HhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            3344444444444322   2335667899999999999999999999999999999999999999999999999999999


Q ss_pred             hcccCCCchh-------hHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhc
Q 038432          385 KHASNVHLRD-------YIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKR  455 (602)
Q Consensus       385 ~~g~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~  455 (602)
                      ++|++++...       ....+..... -++..+..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..
T Consensus        89 ~~g~~~~~~~~~~~~~~~i~~ll~~g~-d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~  167 (434)
T PHA02874         89 DNGVDTSILPIPCIEKDMIKTILDCGI-DVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKH  167 (434)
T ss_pred             HCCCCCCcchhccCCHHHHHHHHHCcC-CCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHC
Confidence            9998875432       0111111111 1223467899999999999999999999999999987  7899999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHh
Q 038432          456 NDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKRE  525 (602)
Q Consensus       456 ~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~  525 (602)
                      |+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..+...
T Consensus       168 ~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~  237 (434)
T PHA02874        168 NFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSA  237 (434)
T ss_pred             CcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHH
Confidence            9999999999999999999999999999999999999999999999999999999999999998766543

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.98  E-value=4.3e-32  Score=288.68  Aligned_cols=208  Identities=13%  Similarity=0.143  Sum_probs=179.9

Q ss_pred             hhcccccccccccC-CCC--C-CCCCchhhhHhhh--cCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCC--hHHHH
Q 038432          310 LKDLNIGDLIAESG-EED--G-DPNMSVNLLTVAS--TGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGH--EECVL  381 (602)
Q Consensus       310 ~~~~~~~~~l~~~~-~~~--~-~~~g~t~L~~A~~--~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~--~~~v~  381 (602)
                      ....++.+.|++.+ ++.  + +..|.||||.|+.  .++.+++++|++.|+++|.+|..|.||||+|+..|+  .++|+
T Consensus       152 ~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVk  231 (764)
T PHA02716        152 GIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIK  231 (764)
T ss_pred             CCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHH
Confidence            45667778888887 554  4 6789999999865  467899999999999999999999999999999995  48999


Q ss_pred             HHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHH-------------------------------------HHc
Q 038432          382 VLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEA-------------------------------------ISS  424 (602)
Q Consensus       382 ~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A-------------------------------------~~~  424 (602)
                      +|+++|||+|.+|                 ..|.||||+|                                     +..
T Consensus       232 lLLe~GADVN~kD-----------------~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~  294 (764)
T PHA02716        232 KIIELGGDMDMKC-----------------VNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARN  294 (764)
T ss_pred             HHHHcCCCCCCCC-----------------CCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHc
Confidence            9999999999998                 8888888865                                     455


Q ss_pred             CChhHHHHHHhcCCCCCC--CCcchhHHHHHh--cCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHH-------------
Q 038432          425 KHHSIFRILYHCTAISDP--YTAGDLLCTAEK--RNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMA-------------  487 (602)
Q Consensus       425 ~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~--~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~-------------  487 (602)
                      |+.+++++|+++|++++.  ..|+||||+|+.  .++.+++++|+++|+++|.+|..|+||||+|+.             
T Consensus       295 g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~  374 (764)
T PHA02716        295 IDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETD  374 (764)
T ss_pred             CCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhcccccccc
Confidence            788999999999999987  789999998764  568999999999999999999999999999875             


Q ss_pred             -cCcHHHHHHHHHCCCCcccCCCCCCChhhHH-H---HHHHHhhhceeeecc
Q 038432          488 -ENNVEMVNFLVMNGSDVVGANKCEFSSTNLN-D---MLQKREIGHRITVHD  534 (602)
Q Consensus       488 -~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a-~---~~~~~~~~~~l~~~~  534 (602)
                       .++.+++++|+++|||++.+|..|.||||.+ +   ..+..++++.|+..+
T Consensus       375 ~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~  426 (764)
T PHA02716        375 NDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDK  426 (764)
T ss_pred             ccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCc
Confidence             3689999999999999999999999999942 2   234577888877654

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.98  E-value=7.4e-32  Score=285.98  Aligned_cols=209  Identities=18%  Similarity=0.221  Sum_probs=136.5

Q ss_pred             ccccccccccCCCCC-CCCCchhhhHhhhcC------cHHHHHHHHhcCCCCCCCCCCCchHHHHHHhc---CChHHHHH
Q 038432          313 LNIGDLIAESGEEDG-DPNMSVNLLTVASTG------NAAFLDELLKARLDPDIGDSKGRTPLHIAASK---GHEECVLV  382 (602)
Q Consensus       313 ~~~~~~l~~~~~~~~-~~~g~t~L~~A~~~g------~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~---g~~~~v~~  382 (602)
                      .+++++|++.|+++. ...+.||||.|+..+      ..++++.|+++|+|+|.+|..|.||||.|+..   |+.+++++
T Consensus        50 ~~iv~~Ll~~GAdvn~~~~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~  129 (494)
T PHA02989         50 IKIVKLLIDNGADVNYKGYIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRF  129 (494)
T ss_pred             hHHHHHHHHcCCCccCCCCCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHH
Confidence            345555555555441 123456666554432      34556666666666666666666666655433   45566666


Q ss_pred             HHhcccCC-CchhhHHHHhccchhHHHHhhccCCcHHHHHHHc--CChhHHHHHHhcCCCCCC---CCcchhHHHHHhcC
Q 038432          383 LLKHASNV-HLRDYIIFMYNLSYDIIILLDMNGNTALWEAISS--KHHSIFRILYHCTAISDP---YTAGDLLCTAEKRN  456 (602)
Q Consensus       383 Ll~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~--~~~~~~~~Ll~~g~~~~~---~~g~t~L~~A~~~~  456 (602)
                      |+++|+|+ +..|                 ..|.||||+|+..  ++.+++++|+++|++++.   ..|.||||.|+..+
T Consensus       130 Ll~~Gadin~~~d-----------------~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~  192 (494)
T PHA02989        130 LLSKGINVNDVKN-----------------SRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRND  192 (494)
T ss_pred             HHHCCCCcccccC-----------------CCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcc
Confidence            66666666 4444                 5555555555432  345555555555555543   24555555554432


Q ss_pred             ----CHHHHHHHHHcC--------------------------------------CCCCCCCCCCcCHHHHHHHcCcHHHH
Q 038432          457 ----DMSVMEELVKYG--------------------------------------LNVDSKDRHGRTAIEIAMAENNVEMV  494 (602)
Q Consensus       457 ----~~~~~~~Ll~~g--------------------------------------a~~n~~d~~g~TpLh~A~~~~~~~iv  494 (602)
                          +.+++++|+++|                                      +++|.+|..|+||||+|+..|+.+++
T Consensus       193 ~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v  272 (494)
T PHA02989        193 IDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAF  272 (494)
T ss_pred             cccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHH
Confidence                455555555554                                      45566677899999999999999999


Q ss_pred             HHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeeccCCCc
Q 038432          495 NFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNST  538 (602)
Q Consensus       495 ~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~  538 (602)
                      ++|+++|||++.+|..|.||||+|+..++.++++.++...+...
T Consensus       273 ~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~~~  316 (494)
T PHA02989        273 NYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKPGKY  316 (494)
T ss_pred             HHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCCChH
Confidence            99999999999999999999999999999999999988775444

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=1.1e-31  Score=285.65  Aligned_cols=210  Identities=17%  Similarity=0.119  Sum_probs=174.9

Q ss_pred             cccccccccCCCC--CCCCCchhhhHh-------------------------------------hhcCcHHHHHHHHhcC
Q 038432          314 NIGDLIAESGEED--GDPNMSVNLLTV-------------------------------------ASTGNAAFLDELLKAR  354 (602)
Q Consensus       314 ~~~~~l~~~~~~~--~~~~g~t~L~~A-------------------------------------~~~g~~~~~~~Ll~~g  354 (602)
                      ++++.|++.++++  ++..|.||||.|                                     +..|+.++++.|++.|
T Consensus       228 eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~G  307 (764)
T PHA02716        228 SVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPG  307 (764)
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCC
Confidence            4566677777654  667788888864                                     4457888999999999


Q ss_pred             CCCCCCCCCCchHHHHHHh--cCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHH---------
Q 038432          355 LDPDIGDSKGRTPLHIAAS--KGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAIS---------  423 (602)
Q Consensus       355 ~~~n~~d~~g~t~Lh~A~~--~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~---------  423 (602)
                      +++|.+|..|+||||+|+.  .++.+++++|+++|++++.+|                 ..|+||||+|+.         
T Consensus       308 AdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD-----------------~~G~TPLH~A~~~lav~~~ld  370 (764)
T PHA02716        308 VKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPD-----------------NIGNTVLHTYLSMLSVVNILD  370 (764)
T ss_pred             CceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCC-----------------CCCCCHHHHHHHhhhhhcccc
Confidence            9999999999999998764  457899999999999999887                 999999999875         


Q ss_pred             -----cCChhHHHHHHhcCCCCCC--CCcchhHHH----HHhcCCHHHHHHHHHcCC-----------------------
Q 038432          424 -----SKHHSIFRILYHCTAISDP--YTAGDLLCT----AEKRNDMSVMEELVKYGL-----------------------  469 (602)
Q Consensus       424 -----~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~----A~~~~~~~~~~~Ll~~ga-----------------------  469 (602)
                           .++.+++++|+++|++++.  ..|.||||.    |...++.+++++|++.|+                       
T Consensus       371 ~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~l  450 (764)
T PHA02716        371 PETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCII  450 (764)
T ss_pred             ccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhH
Confidence                 3789999999999999988  789999994    233567888888877542                       


Q ss_pred             --------------------------------------CCCCCCCCCcCHHHHHHHcCcH-----HHHHHHHHCCCCccc
Q 038432          470 --------------------------------------NVDSKDRHGRTAIEIAMAENNV-----EMVNFLVMNGSDVVG  506 (602)
Q Consensus       470 --------------------------------------~~n~~d~~g~TpLh~A~~~~~~-----~iv~~Ll~~ga~~~~  506 (602)
                                                            ++|..|..|+||||+|+..|+.     +++++|+++|||++.
T Consensus       451 hh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~  530 (764)
T PHA02716        451 HHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINI  530 (764)
T ss_pred             HHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcc
Confidence                                                  3456688999999999999886     455999999999999


Q ss_pred             CCCCCCChhhHHHHHHHH-----hhhceeeeccCCCchh
Q 038432          507 ANKCEFSSTNLNDMLQKR-----EIGHRITVHDDNSTQN  540 (602)
Q Consensus       507 ~d~~g~t~l~~a~~~~~~-----~~~~~l~~~~~~~~~~  540 (602)
                      +|++|+||||+|+..++.     ++++.++..+++....
T Consensus       531 ~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~~~~  569 (764)
T PHA02716        531 PTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPNVDIV  569 (764)
T ss_pred             cCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCCcchH
Confidence            999999999999999865     8999999888766544

>PHA02946 ankyin-like protein; Provisional

Probab=99.97  E-value=1.5e-31  Score=277.03  Aligned_cols=254  Identities=12%  Similarity=0.180  Sum_probs=203.8

Q ss_pred             HHHHhhhhhhcccccccccccCCCC--CCCCCchhhhHhhhcC--cHHHHHHHHhcCCCCCC-CCCCCchHHHHHHhcCC
Q 038432          302 NFLQQHKKLKDLNIGDLIAESGEED--GDPNMSVNLLTVASTG--NAAFLDELLKARLDPDI-GDSKGRTPLHIAASKGH  376 (602)
Q Consensus       302 ~ll~~~~~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g--~~~~~~~Ll~~g~~~n~-~d~~g~t~Lh~A~~~g~  376 (602)
                      +.++.+...++.++.++|++.++++  ++.+|.||||+|+..+  ..++++.|++.|+++|. .|..|.|||| ||..|+
T Consensus        74 TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~  152 (446)
T PHA02946         74 YPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPS  152 (446)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCC
Confidence            3455566677778888888888655  7889999999998765  47999999999999995 6899999998 667799


Q ss_pred             hHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcC--ChhHHHHHHhcCCCCCC--CCcchhHHHH
Q 038432          377 EECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSK--HHSIFRILYHCTAISDP--YTAGDLLCTA  452 (602)
Q Consensus       377 ~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~--~~~~~~~Ll~~g~~~~~--~~g~t~L~~A  452 (602)
                      .+++++|+++|++++..|                 ..|.||||+|+..+  +.+++++|+++|++++.  ..|.||||+|
T Consensus       153 ~~vv~~Ll~~gad~~~~d-----------------~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~A  215 (446)
T PHA02946        153 ERVFKKIMSIGFEARIVD-----------------KFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIV  215 (446)
T ss_pred             hHHHHHHHhccccccccC-----------------CCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            999999999999999998                 99999999998765  46899999999999987  7899999999


Q ss_pred             HhcC--CHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCc-HHHHHHHHHCCCCcc--------------------cC-C
Q 038432          453 EKRN--DMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENN-VEMVNFLVMNGSDVV--------------------GA-N  508 (602)
Q Consensus       453 ~~~~--~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~-~~iv~~Ll~~ga~~~--------------------~~-d  508 (602)
                      +..|  +.+++++|++ |+++|.+|..|.||||+|+..++ .+++++|+++|++++                    .. +
T Consensus       216 a~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~  294 (446)
T PHA02946        216 CSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGK  294 (446)
T ss_pred             HHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCc
Confidence            9886  7899999985 89999999999999999999988 489999999987642                    12 2


Q ss_pred             CCCCChhhHHHHHHHHhhhceeeeccCCCchh---------HHHhhhhhhhhhhhhcCCCCCCcceeEEEecCCCc
Q 038432          509 KCEFSSTNLNDMLQKREIGHRITVHDDNSTQN---------EVLLKKLEIIDFEAKEGKSKGGNCQRVSIYRGHPL  575 (602)
Q Consensus       509 ~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  575 (602)
                      ..|.||||+|+..++.++++.|+.++......         ...++.+-..++.... ...|.++.+.++..+++.
T Consensus       295 ~~~~TpLh~Aa~~g~~eivk~Ll~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~-~~~G~t~l~~a~~~~~~~  369 (446)
T PHA02946        295 QYDSTDFKMAVEVGSIRCVKYLLDNDIICEDAMYYAVLSEYETMVDYLLFNHFSVDS-VVNGHTCMSECVRLNNPV  369 (446)
T ss_pred             ccCCCHHHHHHHcCCHHHHHHHHHCCCccccHHHHHHHhCHHHHHHHHHHCCCCCCC-ccccccHHHHHHHcCCHH
Confidence            35789999999999999999999887543221         1112222222222222 246777777777777654

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=4.4e-31  Score=291.46  Aligned_cols=269  Identities=17%  Similarity=0.165  Sum_probs=217.9

Q ss_pred             HHhhhhhhcccccccccccCCCC--CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHH
Q 038432          304 LQQHKKLKDLNIGDLIAESGEED--GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVL  381 (602)
Q Consensus       304 l~~~~~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~  381 (602)
                      +..+...+...+.++|++.++++  ++..|.||||+||..|+.+++++|++.|++++..+..|.||||+|+..|+.++++
T Consensus       149 l~~~i~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk  228 (682)
T PHA02876        149 IKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIK  228 (682)
T ss_pred             HHHHHHCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHH
Confidence            44445667777888888888765  7788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcccCCCchh--hHHHHhccchhHHH----------HhhccCCcHHHHHHHcCCh-hHHHHHHhcCCCCCC--CCcc
Q 038432          382 VLLKHASNVHLRD--YIIFMYNLSYDIII----------LLDMNGNTALWEAISSKHH-SIFRILYHCTAISDP--YTAG  446 (602)
Q Consensus       382 ~Ll~~g~~~~~~~--~~~~~~~~~~~~~~----------~~~~~g~tpLh~A~~~~~~-~~~~~Ll~~g~~~~~--~~g~  446 (602)
                      +|++.+++++..+  ...+....+.+...          ..|..|.||||+|+..|+. +++++|++.|++++.  ..|.
T Consensus       229 ~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~  308 (682)
T PHA02876        229 AIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGE  308 (682)
T ss_pred             HHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCC
Confidence            9999888876654  23334444444432          2356799999999999886 589999999999887  7899


Q ss_pred             hhHHHHHhcC-CHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHc-CcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHH
Q 038432          447 DLLCTAEKRN-DMSVMEELVKYGLNVDSKDRHGRTAIEIAMAE-NNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKR  524 (602)
Q Consensus       447 t~L~~A~~~~-~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~-~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~  524 (602)
                      ||||+|+..| +.++++.|+..|+++|.+|..|.||||+|+.. ++.+++++|+++|++++.+|..|.||||+|+..++.
T Consensus       309 TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~  388 (682)
T PHA02876        309 TPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNV  388 (682)
T ss_pred             CHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCH
Confidence            9999999998 58999999999999999999999999999985 578899999999999999999999999999999999


Q ss_pred             hhhceeeeccCCCch-----------------hHHHhhhhhhhhhhhhcCCCCCCcceeEEEecC
Q 038432          525 EIGHRITVHDDNSTQ-----------------NEVLLKKLEIIDFEAKEGKSKGGNCQRVSIYRG  572 (602)
Q Consensus       525 ~~~~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  572 (602)
                      ++++.|+..+++...                 ....++.+...++........|.++.+.++..|
T Consensus       389 ~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~  453 (682)
T PHA02876        389 VIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKN  453 (682)
T ss_pred             HHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhC
Confidence            999998887654431                 112233344444444555667777877777655

>PHA03095 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.7e-31  Score=283.55  Aligned_cols=249  Identities=17%  Similarity=0.225  Sum_probs=165.0

Q ss_pred             hhhcccccccccccCCCC--CCCCCchhhhHhhhcC---cHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcC-ChHHHHH
Q 038432          309 KLKDLNIGDLIAESGEED--GDPNMSVNLLTVASTG---NAAFLDELLKARLDPDIGDSKGRTPLHIAASKG-HEECVLV  382 (602)
Q Consensus       309 ~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g---~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g-~~~~v~~  382 (602)
                      .....+..+.|++.+++.  ++..|.||||.|+..+   +.++++.|++.|+++|.+|..|.||||+|+..| +.+++++
T Consensus        23 ~~~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~l  102 (471)
T PHA03095         23 SNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKL  102 (471)
T ss_pred             CCCCHHHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHH
Confidence            444556667777777654  6778999999999998   999999999999999999999999999999999 5999999


Q ss_pred             HHhcccCCCchhh------HHHH--hccchhHHHH----------hhccCCcHHHHHHHcC--ChhHHHHHHhcCCCCCC
Q 038432          383 LLKHASNVHLRDY------IIFM--YNLSYDIIIL----------LDMNGNTALWEAISSK--HHSIFRILYHCTAISDP  442 (602)
Q Consensus       383 Ll~~g~~~~~~~~------~~~~--~~~~~~~~~~----------~~~~g~tpLh~A~~~~--~~~~~~~Ll~~g~~~~~  442 (602)
                      |+++|++++..+.      ..+.  ...+.+++..          .|..|.||||+|+..+  +.+++++|+++|++++.
T Consensus       103 Ll~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~  182 (471)
T PHA03095        103 LIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYA  182 (471)
T ss_pred             HHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcc
Confidence            9999999999881      1111  1112222221          2444555555555443  34555555555555444


Q ss_pred             --CCcchhHHHHHhc--CCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcH--HHHHHHHHCCCCcccCCCCCCChhh
Q 038432          443 --YTAGDLLCTAEKR--NDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNV--EMVNFLVMNGSDVVGANKCEFSSTN  516 (602)
Q Consensus       443 --~~g~t~L~~A~~~--~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~--~iv~~Ll~~ga~~~~~d~~g~t~l~  516 (602)
                        ..|.||||.|+..  ++.++++.|+++|++++.+|..|+||||+|+..|+.  .+++.|++.|++++.+|..|.||||
T Consensus       183 ~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh  262 (471)
T PHA03095        183 VDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLH  262 (471)
T ss_pred             cCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence              4455555555543  445566666666666666666666666666666543  4566666666666666666666666


Q ss_pred             HHHHHHHHhhhceeeeccCCCchhHHHhhhhhhhhhhhhcCCCCCCcceeEEEecCCC
Q 038432          517 LNDMLQKREIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEGKSKGGNCQRVSIYRGHP  574 (602)
Q Consensus       517 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  574 (602)
                      +|+..++.++++.|+..+             +    ........|.++.+.++..||.
T Consensus       263 ~A~~~~~~~~v~~LL~~g-------------a----d~n~~~~~g~tpl~~A~~~~~~  303 (471)
T PHA03095        263 YAAVFNNPRACRRLIALG-------------A----DINAVSSDGNTPLSLMVRNNNG  303 (471)
T ss_pred             HHHHcCCHHHHHHHHHcC-------------C----CCcccCCCCCCHHHHHHHhCCH
Confidence            666666666655555444             2    2233344666777777777765

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=1.6e-31  Score=255.34  Aligned_cols=189  Identities=24%  Similarity=0.334  Sum_probs=176.2

Q ss_pred             CCCCchhhhHhhhcCcHHHHHHHHh-cCCCCCCC--------CCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHH
Q 038432          328 DPNMSVNLLTVASTGNAAFLDELLK-ARLDPDIG--------DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIF  398 (602)
Q Consensus       328 ~~~g~t~L~~A~~~g~~~~~~~Ll~-~g~~~n~~--------d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~  398 (602)
                      ..+|.|||.+||++|+.+++++|++ .++++...        ..+|-+||..|+..||.++||.|+++|+++|...    
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT----  114 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTT----  114 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcccccc----
Confidence            4677899999999999999999998 57776543        4578899999999999999999999999999887    


Q ss_pred             HhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCC
Q 038432          399 MYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDR  476 (602)
Q Consensus       399 ~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~  476 (602)
                                   ..+.|||--||..|+.+++++|+++|+|++.  ..|.|.||+||..|+.+++++|++.|||+|.++.
T Consensus       115 -------------~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~  181 (615)
T KOG0508|consen  115 -------------RTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSY  181 (615)
T ss_pred             -------------ccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcc
Confidence                         7788999999999999999999999999988  8899999999999999999999999999999999


Q ss_pred             CCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432          477 HGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD  534 (602)
Q Consensus       477 ~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~  534 (602)
                      .|+|+||.|++.|+.+++++|+++|+.++ +|..|.|||-.|+..|+.+++..|....
T Consensus       182 kGNTALH~caEsG~vdivq~Ll~~ga~i~-~d~~GmtPL~~Aa~tG~~~iVe~L~~~~  238 (615)
T KOG0508|consen  182 KGNTALHDCAESGSVDIVQLLLKHGAKID-VDGHGMTPLLLAAVTGHTDIVERLLQCE  238 (615)
T ss_pred             cCchHHHhhhhcccHHHHHHHHhCCceee-ecCCCCchHHHHhhhcchHHHHHHhcCC
Confidence            99999999999999999999999999997 5677999999999999999999998643

>PHA02795 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.6e-30  Score=259.14  Aligned_cols=183  Identities=13%  Similarity=0.125  Sum_probs=168.0

Q ss_pred             HhhhcCcHHHHHHHHhcCCCCC------CCCCCCchHHHHHHh--cCChHHHHHHHhcccCCCchhhHHHHhccchhHHH
Q 038432          337 TVASTGNAAFLDELLKARLDPD------IGDSKGRTPLHIAAS--KGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIII  408 (602)
Q Consensus       337 ~A~~~g~~~~~~~Ll~~g~~~n------~~d~~g~t~Lh~A~~--~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~  408 (602)
                      +|+..+..++++.|+++|+++|      ..+..++|+||+|+.  .|+.++|++|+++|||++..+              
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~~--------------  148 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKIE--------------  148 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCCC--------------
Confidence            8999999999999999999999      778889999999999  899999999999999999754              


Q ss_pred             HhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--------CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 038432          409 LLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--------YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRT  480 (602)
Q Consensus       409 ~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--------~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~T  480 (602)
                           +.||||.|+..|+.+++++|+++|++.+.        ..+.||+|.|+..++.+++++|+++|||+|.+|..|.|
T Consensus       149 -----~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~T  223 (437)
T PHA02795        149 -----CLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRT  223 (437)
T ss_pred             -----CCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCC
Confidence                 58999999999999999999999985433        13678999999999999999999999999999999999


Q ss_pred             HHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHH--------HHhhhceeeeccCCCc
Q 038432          481 AIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQ--------KREIGHRITVHDDNST  538 (602)
Q Consensus       481 pLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~--------~~~~~~~l~~~~~~~~  538 (602)
                      |||+|+..|+.+++++|+++|||++.+|..|.||||+|+..|        +.++++.|+.++++..
T Consensus       224 pLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~  289 (437)
T PHA02795        224 LLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSID  289 (437)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCC
Confidence            999999999999999999999999999999999999999988        4688888887765444

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.6e-30  Score=274.15  Aligned_cols=230  Identities=17%  Similarity=0.205  Sum_probs=185.6

Q ss_pred             hcccccccccccCCCCC-CCCCchhhhHhhhc--CcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcC------ChHHHH
Q 038432          311 KDLNIGDLIAESGEEDG-DPNMSVNLLTVAST--GNAAFLDELLKARLDPDIGDSKGRTPLHIAASKG------HEECVL  381 (602)
Q Consensus       311 ~~~~~~~~l~~~~~~~~-~~~g~t~L~~A~~~--g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g------~~~~v~  381 (602)
                      ...+..+.|++.|+++. ..+|.||||.++..  ++.++++.|+++|+|+|.++ .+.||||.|+..+      +.++|+
T Consensus        14 ~~~~~v~~LL~~GadvN~~~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~   92 (494)
T PHA02989         14 VDKNALEFLLRTGFDVNEEYRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVK   92 (494)
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHH
Confidence            44556667777777662 24688998765543  47899999999999999987 6799999998754      578999


Q ss_pred             HHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHc---CChhHHHHHHhcCCCC-CC--CCcchhHHHHHhc
Q 038432          382 VLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISS---KHHSIFRILYHCTAIS-DP--YTAGDLLCTAEKR  455 (602)
Q Consensus       382 ~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~---~~~~~~~~Ll~~g~~~-~~--~~g~t~L~~A~~~  455 (602)
                      +|+++|+|+|.+|                 ..|.||||.|+..   |+.+++++|+++|+|+ +.  ..|.||||+|+..
T Consensus        93 ~Ll~~Gadin~~d-----------------~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~  155 (494)
T PHA02989         93 LLLKFGADINLKT-----------------FNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLES  155 (494)
T ss_pred             HHHHCCCCCCCCC-----------------CCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHh
Confidence            9999999999998                 9999999998765   6899999999999999 44  7899999998764


Q ss_pred             --CCHHHHHHHHHcCCCCCC-CCCCCcCHHHHHHHcC----cHHHHHHHHHCCCCcccC---------------------
Q 038432          456 --NDMSVMEELVKYGLNVDS-KDRHGRTAIEIAMAEN----NVEMVNFLVMNGSDVVGA---------------------  507 (602)
Q Consensus       456 --~~~~~~~~Ll~~ga~~n~-~d~~g~TpLh~A~~~~----~~~iv~~Ll~~ga~~~~~---------------------  507 (602)
                        ++.+++++|+++|+|++. .|..|.||||+|+..+    +.+++++|+++|++++.+                     
T Consensus       156 ~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~  235 (494)
T PHA02989        156 FSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKK  235 (494)
T ss_pred             ccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhccc
Confidence              689999999999999998 6889999999998764    899999999999887654                     


Q ss_pred             -----------------CCCCCChhhHHHHHHHHhhhceeeeccCCCchhHHHhhhhhhhhhhhhcCCCCCCcceeEEEe
Q 038432          508 -----------------NKCEFSSTNLNDMLQKREIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEGKSKGGNCQRVSIY  570 (602)
Q Consensus       508 -----------------d~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  570 (602)
                                       |..|+||||+|+..++.++++.|+..++             +.+.    ....|.++.+.++.
T Consensus       236 ~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Ga-------------din~----~d~~G~TpL~~A~~  298 (494)
T PHA02989        236 EFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGD-------------DIYN----VSKDGDTVLTYAIK  298 (494)
T ss_pred             chHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCC-------------Cccc----cCCCCCCHHHHHHH
Confidence                             4558888888888888887777776663             2222    23356666666666


Q ss_pred             cCCCc
Q 038432          571 RGHPL  575 (602)
Q Consensus       571 ~~~~~  575 (602)
                      .|+..
T Consensus       299 ~~~~~  303 (494)
T PHA02989        299 HGNID  303 (494)
T ss_pred             cCCHH
Confidence            66643

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=7.1e-30  Score=281.88  Aligned_cols=204  Identities=21%  Similarity=0.239  Sum_probs=105.4

Q ss_pred             cccccccccCCCC--CCCCCchhhhHhhhcCcH-HHHHHHHhcCCCCCCCCCCCchHHHHHHhcC-ChHHHHHHHhcccC
Q 038432          314 NIGDLIAESGEED--GDPNMSVNLLTVASTGNA-AFLDELLKARLDPDIGDSKGRTPLHIAASKG-HEECVLVLLKHASN  389 (602)
Q Consensus       314 ~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g~~-~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g-~~~~v~~Ll~~g~~  389 (602)
                      +..+.+.+.+.+.  .+..|.||||+|+..|+. ++++.|++.|+++|.+|..|.||||+|+..| +.+++++|+..|++
T Consensus       254 ~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gad  333 (682)
T PHA02876        254 ETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGAD  333 (682)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCC
Confidence            3333444444322  444566777777766664 4666666666666666666777777776666 46666666666666


Q ss_pred             CCchhhHHHHhccchhHHHHhhccCCcHHHHHHHc-CChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHH
Q 038432          390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISS-KHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVK  466 (602)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~-~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~  466 (602)
                      ++..|                 ..|.||||+|+.. ++.+++++|++.|++++.  ..|.||||+|+..|+.+++++|++
T Consensus       334 in~~d-----------------~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~  396 (682)
T PHA02876        334 VNAAD-----------------RLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLD  396 (682)
T ss_pred             CCCcc-----------------cCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            66665                 4444444444442 234444444444444443  344444444444444444444444


Q ss_pred             cCCCCCCCCCCCcCHHHHHHHcCc-HHHHHHHHHCCCCcccCCCCCCChhhHHHHHH-HHhhhceeeecc
Q 038432          467 YGLNVDSKDRHGRTAIEIAMAENN-VEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQ-KREIGHRITVHD  534 (602)
Q Consensus       467 ~ga~~n~~d~~g~TpLh~A~~~~~-~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~-~~~~~~~l~~~~  534 (602)
                      +|++++..+..|.||||+|+..++ ..++++|+++|+|++.+|.+|+||||+|+..+ +.++++.|+..+
T Consensus       397 ~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~G  466 (682)
T PHA02876        397 YGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNG  466 (682)
T ss_pred             CCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCC
Confidence            444444444444444444443333 23344444444444444444444444444433 234444444433

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=2e-29  Score=256.39  Aligned_cols=254  Identities=21%  Similarity=0.248  Sum_probs=173.8

Q ss_pred             HHhhhhhhcccccccccccCCCC--CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHH
Q 038432          304 LQQHKKLKDLNIGDLIAESGEED--GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVL  381 (602)
Q Consensus       304 l~~~~~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~  381 (602)
                      +..+...+..+..+.+.+.+++.  .+.++.+|+|+|+..|+.++++.|+++|+|+|..|..|.||||+||..++.|..+
T Consensus        92 l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k  171 (929)
T KOG0510|consen   92 LHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKK  171 (929)
T ss_pred             hHHHhhcchHHHHHHHHhcCCCCChhhhhccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHhcChHHHHH
Confidence            44566667777888888888765  7778899999999999999999999999999999999999999999999999889


Q ss_pred             HHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHh-----cCCCCCC--CCcchhHHHHHh
Q 038432          382 VLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYH-----CTAISDP--YTAGDLLCTAEK  454 (602)
Q Consensus       382 ~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~-----~g~~~~~--~~g~t~L~~A~~  454 (602)
                      .|++.|+++...|                 .+|++|+|.|+..|..++.++.+.     ++..+|.  ..+.||||.|+.
T Consensus       172 ~Li~~~a~~~K~~-----------------~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve  234 (929)
T KOG0510|consen  172 ELINKGADPCKSD-----------------IDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVE  234 (929)
T ss_pred             HHHhcCCCCCccc-----------------CcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhh
Confidence            9999999998887                 666666666666666666666665     3333433  555666666666


Q ss_pred             cCCHHHHHHHHHcCCC---------------CCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHH
Q 038432          455 RNDMSVMEELVKYGLN---------------VDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLND  519 (602)
Q Consensus       455 ~~~~~~~~~Ll~~ga~---------------~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~  519 (602)
                      .|+.++++.+++.|+.               +|..|++|.||||+||+.|+.+.++.|+..||+++.+++++.||||.|+
T Consensus       235 ~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA  314 (929)
T KOG0510|consen  235 GGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAA  314 (929)
T ss_pred             cCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHH
Confidence            6666666666655432               2344566666666666666666666666666666666666666666666


Q ss_pred             HHHHHhhhceeee-ccCC-----------------CchhHHHhhhhhhhhhhhh---cCCCCCCcceeEEEecCCC
Q 038432          520 MLQKREIGHRITV-HDDN-----------------STQNEVLLKKLEIIDFEAK---EGKSKGGNCQRVSIYRGHP  574 (602)
Q Consensus       520 ~~~~~~~~~~l~~-~~~~-----------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  574 (602)
                      ..|+...++.|+. ++.+                 .++.....+-|-+.++...   ...+.|.++.+.++.-|++
T Consensus       315 ~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~  390 (929)
T KOG0510|consen  315 IYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNT  390 (929)
T ss_pred             HcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccH
Confidence            6666655555544 1110                 0111111111112111111   3367788888888888887

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=3.7e-29  Score=265.04  Aligned_cols=191  Identities=13%  Similarity=0.176  Sum_probs=167.8

Q ss_pred             CCCchhhhHhh--hcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhc-----CChHHHHHHHhcccCCCchhhHHHHhc
Q 038432          329 PNMSVNLLTVA--STGNAAFLDELLKARLDPDIGDSKGRTPLHIAASK-----GHEECVLVLLKHASNVHLRDYIIFMYN  401 (602)
Q Consensus       329 ~~g~t~L~~A~--~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~-----g~~~~v~~Ll~~g~~~~~~~~~~~~~~  401 (602)
                      ..+.|+++.+.  ..++.++++.|+++|+|+|..|..|.||||.|+..     ++.+++++|+++|+|+|.+|       
T Consensus        34 ~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d-------  106 (489)
T PHA02798         34 VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKN-------  106 (489)
T ss_pred             cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCC-------
Confidence            44567666443  35589999999999999999999999999999864     67899999999999999998       


Q ss_pred             cchhHHHHhhccCCcHHHHHHHcC---ChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCC---HHHHHHHHHcCCCCCC
Q 038432          402 LSYDIIILLDMNGNTALWEAISSK---HHSIFRILYHCTAISDP--YTAGDLLCTAEKRND---MSVMEELVKYGLNVDS  473 (602)
Q Consensus       402 ~~~~~~~~~~~~g~tpLh~A~~~~---~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~---~~~~~~Ll~~ga~~n~  473 (602)
                                ..|.||||+|+.++   +.+++++|+++|++++.  ..|.||||+|+..++   .+++++|+++|+|+|.
T Consensus       107 ----------~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~  176 (489)
T PHA02798        107 ----------SDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINT  176 (489)
T ss_pred             ----------CCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCccc
Confidence                      99999999999986   78999999999999988  789999999999998   9999999999999998


Q ss_pred             CC-CCCcCHHHHHHHc----CcHHHHHHHHHCCCCc---------------------------------------ccCCC
Q 038432          474 KD-RHGRTAIEIAMAE----NNVEMVNFLVMNGSDV---------------------------------------VGANK  509 (602)
Q Consensus       474 ~d-~~g~TpLh~A~~~----~~~~iv~~Ll~~ga~~---------------------------------------~~~d~  509 (602)
                      ++ ..|.||||.++..    ++.+++++|+++|+++                                       |.+|.
T Consensus       177 ~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~  256 (489)
T PHA02798        177 HNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDE  256 (489)
T ss_pred             ccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCc
Confidence            85 5799999999764    4789999999888654                                       45677


Q ss_pred             CCCChhhHHHHHHHHhhhceeeeccCC
Q 038432          510 CEFSSTNLNDMLQKREIGHRITVHDDN  536 (602)
Q Consensus       510 ~g~t~l~~a~~~~~~~~~~~l~~~~~~  536 (602)
                      .|+||||+|+..++.++++.|+..+++
T Consensus       257 ~G~TPL~~A~~~~~~~~v~~LL~~GAd  283 (489)
T PHA02798        257 LGFNPLYYSVSHNNRKIFEYLLQLGGD  283 (489)
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            899999999999999999998887754

>PHA02917 ankyrin-like protein; Provisional

Probab=99.96  E-value=8.8e-29  Score=265.81  Aligned_cols=187  Identities=13%  Similarity=0.105  Sum_probs=157.2

Q ss_pred             CCCCCchhhhHhhhc---CcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChH----HHHHHHhcccCCCchhhHHHH
Q 038432          327 GDPNMSVNLLTVAST---GNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEE----CVLVLLKHASNVHLRDYIIFM  399 (602)
Q Consensus       327 ~~~~g~t~L~~A~~~---g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~----~v~~Ll~~g~~~~~~~~~~~~  399 (602)
                      ++.+|.||||+|+..   |+.+++++|++.|++++..|..|+||||+|+..|+.+    +++.|++.+...|..+     
T Consensus        28 ~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~-----  102 (661)
T PHA02917         28 RNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNIND-----  102 (661)
T ss_pred             cCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCC-----
Confidence            578899999997554   8899999999999999999999999999999999854    5678888755455433     


Q ss_pred             hccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHH--HhcCCHHHHHHHHHcCCCCCCCC
Q 038432          400 YNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTA--EKRNDMSVMEELVKYGLNVDSKD  475 (602)
Q Consensus       400 ~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A--~~~~~~~~~~~Ll~~ga~~n~~d  475 (602)
                                    ..+++|.|+.+|+.+++++|+++|++++.  ..|+||||.|  +..|+.+++++|+++|+++|.+|
T Consensus       103 --------------~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d  168 (661)
T PHA02917        103 --------------FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYED  168 (661)
T ss_pred             --------------cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccc
Confidence                          23677888899999999999999999987  6899999854  45789999999999999998665


Q ss_pred             C---CC-----------cCHHHHHHH-----------cCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHH--hhhc
Q 038432          476 R---HG-----------RTAIEIAMA-----------ENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKR--EIGH  528 (602)
Q Consensus       476 ~---~g-----------~TpLh~A~~-----------~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~--~~~~  528 (602)
                      .   .|           .||||+|+.           .++.+++++|+++|||++.+|.+|.||||+|+..++.  ++++
T Consensus       169 ~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk  248 (661)
T PHA02917        169 EDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVK  248 (661)
T ss_pred             cccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHH
Confidence            3   34           599999986           4588999999999999999999999999999998875  6888


Q ss_pred             eeee
Q 038432          529 RITV  532 (602)
Q Consensus       529 ~l~~  532 (602)
                      .|..
T Consensus       249 ~Li~  252 (661)
T PHA02917        249 LLMK  252 (661)
T ss_pred             HHHh
Confidence            8754

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=6.6e-28  Score=240.42  Aligned_cols=192  Identities=11%  Similarity=0.034  Sum_probs=164.4

Q ss_pred             hhhhhcccccccccccCCC--------CCCCCCchhhhHhhh--cCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCC
Q 038432          307 HKKLKDLNIGDLIAESGEE--------DGDPNMSVNLLTVAS--TGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGH  376 (602)
Q Consensus       307 ~~~~~~~~~~~~l~~~~~~--------~~~~~g~t~L~~A~~--~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~  376 (602)
                      +...+..+..+++...+++        .++..++|+||.|+.  .|+.+++++|+++|+|++..  ++.||||.|+..|+
T Consensus        84 ~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~~  161 (437)
T PHA02795         84 FAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKKE  161 (437)
T ss_pred             HhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcCc
Confidence            3444556677777777766        356778999999999  89999999999999999985  45899999999999


Q ss_pred             hHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHh
Q 038432          377 EECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEK  454 (602)
Q Consensus       377 ~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~  454 (602)
                      .+++++|+++|++.+...        .   ....+..|.||+|.|...++.+++++|+++|+++|.  ..|.||||+|+.
T Consensus       162 ~eIVk~Lls~Ga~~~n~~--------~---~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~  230 (437)
T PHA02795        162 SSVVEFILNCGIPDENDV--------K---LDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIY  230 (437)
T ss_pred             HHHHHHHHhcCCcccccc--------c---chhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHH
Confidence            999999999998543221        0   011123578999999999999999999999999998  789999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCc--------HHHHHHHHHCCCCcccCCCCC
Q 038432          455 RNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENN--------VEMVNFLVMNGSDVVGANKCE  511 (602)
Q Consensus       455 ~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~--------~~iv~~Ll~~ga~~~~~d~~g  511 (602)
                      .|+.+++++|+++|+++|.+|..|.||||+|+..|+        .+++++|+++|++++..+..+
T Consensus       231 ~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~~~~  295 (437)
T PHA02795        231 AGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIKLAI  295 (437)
T ss_pred             cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchhHHh
Confidence            999999999999999999999999999999999984        699999999999998765443

>PHA02730 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.2e-27  Score=249.84  Aligned_cols=190  Identities=14%  Similarity=0.085  Sum_probs=163.5

Q ss_pred             CCCCCCchhhhHhhhcC---cHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcC--ChHHHHHHHhcccCC--CchhhHHH
Q 038432          326 DGDPNMSVNLLTVASTG---NAAFLDELLKARLDPDIGDSKGRTPLHIAASKG--HEECVLVLLKHASNV--HLRDYIIF  398 (602)
Q Consensus       326 ~~~~~g~t~L~~A~~~g---~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g--~~~~v~~Ll~~g~~~--~~~~~~~~  398 (602)
                      .++.+|.||||+|+..|   +.+++++|+++|+|++.+|..|+||||+|+..+  +.++|++|+++|++.  +..+    
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~----  111 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTS----  111 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCccccc----
Confidence            45778999999999987   599999999999999999999999999999976  799999999996654  6665    


Q ss_pred             HhccchhHHHHhhccCCcHHHHHHH--cCChhHHHHHHh-cCCCCCCC-------CcchhHHHHHhcCCHHHHHHHHHcC
Q 038432          399 MYNLSYDIIILLDMNGNTALWEAIS--SKHHSIFRILYH-CTAISDPY-------TAGDLLCTAEKRNDMSVMEELVKYG  468 (602)
Q Consensus       399 ~~~~~~~~~~~~~~~g~tpLh~A~~--~~~~~~~~~Ll~-~g~~~~~~-------~g~t~L~~A~~~~~~~~~~~Ll~~g  468 (602)
                                   ..+.+|||.++.  +++.+++++|++ .+++++..       .|.+|+++|+..++++++++|+++|
T Consensus       112 -------------~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g  178 (672)
T PHA02730        112 -------------NINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSE  178 (672)
T ss_pred             -------------ccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcC
Confidence                         779999999999  899999999996 66776652       6789999999999999999999999


Q ss_pred             CCCC-------CCCCCCc-CHHHHH------HHcCcHHHHHHHHHCCCCcccCCCCCCChhhH--HHHHHHHhhhceeee
Q 038432          469 LNVD-------SKDRHGR-TAIEIA------MAENNVEMVNFLVMNGSDVVGANKCEFSSTNL--NDMLQKREIGHRITV  532 (602)
Q Consensus       469 a~~n-------~~d~~g~-TpLh~A------~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~--a~~~~~~~~~~~l~~  532 (602)
                      ++++       ..|..+. |.||++      ...++.|++++|+++|||+|.+|.+|.||||+  |...++.|+++.|+.
T Consensus       179 ~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        179 CYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             CcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence            9996       2344444 455544      35578999999999999999999999999996  444566899999987

>PHA02730 ankyrin-like protein; Provisional

Probab=99.95  E-value=2.4e-27  Score=247.56  Aligned_cols=212  Identities=15%  Similarity=0.137  Sum_probs=177.7

Q ss_pred             hhhcccccccccccCCCC--CCCCCchhhhH--hhhcCcHHHHHHHHh--------------------------------
Q 038432          309 KLKDLNIGDLIAESGEED--GDPNMSVNLLT--VASTGNAAFLDELLK--------------------------------  352 (602)
Q Consensus       309 ~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~--A~~~g~~~~~~~Ll~--------------------------------  352 (602)
                      ..+..+++++|++.|+++  ++.+|.||||+  |+..|+.|+++.|++                                
T Consensus       211 ~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (672)
T PHA02730        211 ESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTP  290 (672)
T ss_pred             hccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhccc
Confidence            445677888899999875  88899999995  556678999999999                                


Q ss_pred             cCCCCCC--------------------CCCCCch---------------------HHHHHHhcC---ChHHHHHHHhccc
Q 038432          353 ARLDPDI--------------------GDSKGRT---------------------PLHIAASKG---HEECVLVLLKHAS  388 (602)
Q Consensus       353 ~g~~~n~--------------------~d~~g~t---------------------~Lh~A~~~g---~~~~v~~Ll~~g~  388 (602)
                      .|+|...                    .+..|.+                     .||.=.+.+   +.+++++|+++||
T Consensus       291 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GA  370 (672)
T PHA02730        291 YNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGA  370 (672)
T ss_pred             CCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCC
Confidence            6877655                    4566654                     677666655   6899999999999


Q ss_pred             CCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCC----hhHHHHHHhcCC--CCCC--CCcchhHHH---HHhcC-
Q 038432          389 NVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKH----HSIFRILYHCTA--ISDP--YTAGDLLCT---AEKRN-  456 (602)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~----~~~~~~Ll~~g~--~~~~--~~g~t~L~~---A~~~~-  456 (602)
                      |+|. +                 ..|.||||+|+..++    .+++++|+++|+  +++.  ..|.||||.   |...+ 
T Consensus       371 dIN~-k-----------------~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~  432 (672)
T PHA02730        371 TMDK-T-----------------TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNC  432 (672)
T ss_pred             CCCc-C-----------------CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccc
Confidence            9996 4                 689999999998875    899999999998  4654  679999994   33332 


Q ss_pred             --------CHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCC-CCCChhhHHHHH--HHHh
Q 038432          457 --------DMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK-CEFSSTNLNDML--QKRE  525 (602)
Q Consensus       457 --------~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~-~g~t~l~~a~~~--~~~~  525 (602)
                              ..+++++|+++|||+|++|..|.||||+|+..++.+++++|+++|||++.+|. .|.||+|+|+..  ++.+
T Consensus       433 ~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~e  512 (672)
T PHA02730        433 GYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTK  512 (672)
T ss_pred             cccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHH
Confidence                    23579999999999999999999999999999999999999999999999997 599999999874  6789


Q ss_pred             hhceeeeccCCCc
Q 038432          526 IGHRITVHDDNST  538 (602)
Q Consensus       526 ~~~~l~~~~~~~~  538 (602)
                      +++.|+.++++..
T Consensus       513 Iv~~LLs~ga~i~  525 (672)
T PHA02730        513 LVDLLLSYHPTLE  525 (672)
T ss_pred             HHHHHHHcCCCHH
Confidence            9999999986554

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.95  E-value=8.3e-28  Score=260.35  Aligned_cols=233  Identities=22%  Similarity=0.257  Sum_probs=174.1

Q ss_pred             HHhhhhhhcccccccccccCCC--CCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcC-ChHHH
Q 038432          304 LQQHKKLKDLNIGDLIAESGEE--DGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKG-HEECV  380 (602)
Q Consensus       304 l~~~~~~~~~~~~~~l~~~~~~--~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g-~~~~v  380 (602)
                      +.-+.+.+.....+++...+.+  .++.+|.||||.|+..++..+++.+++.|+++|..+..|.||+|+|+..| ..+++
T Consensus       378 l~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~  457 (1143)
T KOG4177|consen  378 LHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIA  457 (1143)
T ss_pred             hhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhh
Confidence            3445666667777777766643  36667777777777777777777777777777777777777777777777 77777


Q ss_pred             HHHHhcccCCCchh------hHHHHhccchhHHH----------HhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--
Q 038432          381 LVLLKHASNVHLRD------YIIFMYNLSYDIII----------LLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--  442 (602)
Q Consensus       381 ~~Ll~~g~~~~~~~------~~~~~~~~~~~~~~----------~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--  442 (602)
                      ..+++.|+++|...      ...+...++.+...          ...+.|.|+||.|...+...+++.++++|++++.  
T Consensus       458 ~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~  537 (1143)
T KOG4177|consen  458 RLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRT  537 (1143)
T ss_pred             hhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhc
Confidence            77777777777765      00011111111100          0013344444444444445555555555666655  


Q ss_pred             CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHH
Q 038432          443 YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQ  522 (602)
Q Consensus       443 ~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~  522 (602)
                      ..|.||||.|+.+|+.++|++|+++|||++.+|+.|+||||.||..|+.+|+.+|+++||++|..|.+|.|||++|...+
T Consensus       538 ~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg  617 (1143)
T KOG4177|consen  538 GRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLG  617 (1143)
T ss_pred             ccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhc
Confidence            57789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhceeeeccCC
Q 038432          523 KREIGHRITVHDDN  536 (602)
Q Consensus       523 ~~~~~~~l~~~~~~  536 (602)
                      +..+++.+......
T Consensus       618 ~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  618 YLSVVKLLKVVTAT  631 (1143)
T ss_pred             ccchhhHHHhccCc
Confidence            99999998877755

>PHA02917 ankyrin-like protein; Provisional

Probab=99.95  E-value=5.4e-27  Score=252.04  Aligned_cols=209  Identities=14%  Similarity=0.134  Sum_probs=175.2

Q ss_pred             hhhhcccccccccccCCCC--CCCCCchhhhHhhhcCcHH----HHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHH
Q 038432          308 KKLKDLNIGDLIAESGEED--GDPNMSVNLLTVASTGNAA----FLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVL  381 (602)
Q Consensus       308 ~~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g~~~----~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~  381 (602)
                      ...+..++.+.|++.++++  ++.+|.||||.|+..|+.+    +++.|++.+...|..+  ..+++|+|+..|+.++|+
T Consensus        43 ~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~--~~~~~~~a~~~~~~e~vk  120 (661)
T PHA02917         43 EHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNIND--FNIFSYMKSKNVDVDLIK  120 (661)
T ss_pred             hhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCC--cchHHHHHhhcCCHHHHH
Confidence            4446678888888888765  7778999999999999854    5677887654455543  347888899999999999


Q ss_pred             HHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHH--HcCChhHHHHHHhcCCCCCCC-----Cc---------
Q 038432          382 VLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAI--SSKHHSIFRILYHCTAISDPY-----TA---------  445 (602)
Q Consensus       382 ~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~--~~~~~~~~~~Ll~~g~~~~~~-----~g---------  445 (602)
                      +|+++|+|+|.+|                 ..|.||||.|+  ..|+.+++++|+++|++++..     .|         
T Consensus       121 ~Ll~~Gadin~~d-----------------~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~  183 (661)
T PHA02917        121 VLVEHGFDLSVKC-----------------ENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPR  183 (661)
T ss_pred             HHHHcCCCCCccC-----------------CCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccccc
Confidence            9999999999998                 99999999654  578999999999999999742     23         


Q ss_pred             --chhHHHHHh-----------cCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcH--HHHHHHHHCCCCcc----c
Q 038432          446 --GDLLCTAEK-----------RNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNV--EMVNFLVMNGSDVV----G  506 (602)
Q Consensus       446 --~t~L~~A~~-----------~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~--~iv~~Ll~~ga~~~----~  506 (602)
                        .||||+|+.           +++.+++++|+++|+|+|.+|.+|.||||+|+..|+.  ++|++|++ |++++    .
T Consensus       184 ~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~  262 (661)
T PHA02917        184 NCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYI  262 (661)
T ss_pred             ccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccc
Confidence              599999986           5689999999999999999999999999999999985  79999975 88875    5


Q ss_pred             CCCCCCChhhHHHHHH---------HHhhhceeeeccCC
Q 038432          507 ANKCEFSSTNLNDMLQ---------KREIGHRITVHDDN  536 (602)
Q Consensus       507 ~d~~g~t~l~~a~~~~---------~~~~~~~l~~~~~~  536 (602)
                      .|..|.||+++|++.+         +.++++.|+..+..
T Consensus       263 ~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~  301 (661)
T PHA02917        263 DDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKP  301 (661)
T ss_pred             cCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCC
Confidence            6778999999999643         56788888888753

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=7.4e-27  Score=217.40  Aligned_cols=168  Identities=14%  Similarity=0.193  Sum_probs=145.5

Q ss_pred             HHhhhhhhcccccccccccCCCCCCCCCchhhhHhhhcC--cHHHHHHHHhcCCCCCCCC-CCCchHHHHHHhc---CCh
Q 038432          304 LQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTG--NAAFLDELLKARLDPDIGD-SKGRTPLHIAASK---GHE  377 (602)
Q Consensus       304 l~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~A~~~g--~~~~~~~Ll~~g~~~n~~d-~~g~t~Lh~A~~~---g~~  377 (602)
                      +..+...++.+.++.+++. .+..+..|.||||.|+..+  +.++++.|++.|+++|.++ ..|.||||+|+..   ++.
T Consensus        25 L~~A~~~~~~~~vk~Li~~-~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~  103 (209)
T PHA02859         25 LFYYVEKDDIEGVKKWIKF-VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEP  103 (209)
T ss_pred             HHHHHHhCcHHHHHHHHHh-hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccH
Confidence            4445555666666665543 3456788999999999854  8999999999999999997 5899999998864   479


Q ss_pred             HHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHH--cCChhHHHHHHhcCCCCCC--CCcchhHHH-H
Q 038432          378 ECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAIS--SKHHSIFRILYHCTAISDP--YTAGDLLCT-A  452 (602)
Q Consensus       378 ~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~--~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~-A  452 (602)
                      +++++|+++|+++|.+|                 ..|.||||+|+.  .++.+++++|+++|++++.  ..|.||||. |
T Consensus       104 eiv~~Ll~~gadin~~d-----------------~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a  166 (209)
T PHA02859        104 EILKILIDSGSSITEED-----------------EDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYI  166 (209)
T ss_pred             HHHHHHHHCCCCCCCcC-----------------CCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHH
Confidence            99999999999999998                 999999999986  4689999999999999987  789999995 5


Q ss_pred             HhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcC
Q 038432          453 EKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAEN  489 (602)
Q Consensus       453 ~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~  489 (602)
                      +..++.+++++|+++|++++.+|..|.||||+|+.++
T Consensus       167 ~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        167 LFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            6788999999999999999999999999999998765

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=3.9e-27  Score=225.44  Aligned_cols=155  Identities=23%  Similarity=0.314  Sum_probs=148.9

Q ss_pred             CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhH
Q 038432          327 GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDI  406 (602)
Q Consensus       327 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~  406 (602)
                      ...+|-+||..|+..|++++|+.|+++|+++|.......|||--||..|+.++||+|+++|+|++..|            
T Consensus        80 e~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~Ian------------  147 (615)
T KOG0508|consen   80 ETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIAN------------  147 (615)
T ss_pred             cccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccc------------
Confidence            45678899999999999999999999999999999888999999999999999999999999999998            


Q ss_pred             HHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHH
Q 038432          407 IILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEI  484 (602)
Q Consensus       407 ~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~  484 (602)
                           ..|.|.||+||..||.+++++|++.|+|+|.  ..|+|+||.|+..|+.+++++|+++|+.++ +|..|.|||..
T Consensus       148 -----rhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~-~d~~GmtPL~~  221 (615)
T KOG0508|consen  148 -----RHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID-VDGHGMTPLLL  221 (615)
T ss_pred             -----cCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceee-ecCCCCchHHH
Confidence                 9999999999999999999999999999998  899999999999999999999999999887 56779999999


Q ss_pred             HHHcCcHHHHHHHHH
Q 038432          485 AMAENNVEMVNFLVM  499 (602)
Q Consensus       485 A~~~~~~~iv~~Ll~  499 (602)
                      |+..|+.++|..|++
T Consensus       222 Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  222 AAVTGHTDIVERLLQ  236 (615)
T ss_pred             HhhhcchHHHHHHhc
Confidence            999999999999997

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.94  E-value=1e-27  Score=207.11  Aligned_cols=180  Identities=23%  Similarity=0.238  Sum_probs=170.6

Q ss_pred             CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhH
Q 038432          327 GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDI  406 (602)
Q Consensus       327 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~  406 (602)
                      .+++|+..++.++-+|+.+.+..++.+|+..|..+--+++|+.+++...+.+.+..+.+.  -+|..|            
T Consensus        92 t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~D------------  157 (296)
T KOG0502|consen   92 TDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACD------------  157 (296)
T ss_pred             CCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhc--cccCcc------------
Confidence            788899999999999999999999999999999999999999999999999988777665  456666            


Q ss_pred             HHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHH
Q 038432          407 IILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEI  484 (602)
Q Consensus       407 ~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~  484 (602)
                           +.|.|||.+|+..|++++|++|++.|+|++.  ....++|.+|++.|..+++++|++++.|+|..|.+|-|||-+
T Consensus       158 -----e~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLly  232 (296)
T KOG0502|consen  158 -----EFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLY  232 (296)
T ss_pred             -----ccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeee
Confidence                 9999999999999999999999999999998  788899999999999999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHh
Q 038432          485 AMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKRE  525 (602)
Q Consensus       485 A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~  525 (602)
                      |++.++.++|+.|+..|||++..|..|.+++++|...|.+.
T Consensus       233 Avrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr~  273 (296)
T KOG0502|consen  233 AVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYRI  273 (296)
T ss_pred             eecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhHH
Confidence            99999999999999999999999999999999999999873

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.94  E-value=2.7e-28  Score=264.08  Aligned_cols=223  Identities=22%  Similarity=0.306  Sum_probs=186.8

Q ss_pred             ccccccccCCCC--CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCc
Q 038432          315 IGDLIAESGEED--GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHL  392 (602)
Q Consensus       315 ~~~~l~~~~~~~--~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~  392 (602)
                      ....+...++..  .+..|.||+|.|+..|+.+.++.++..|+++|..+..|.||||.|+..++.++|+.++++|++++.
T Consensus       356 ~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~  435 (1143)
T KOG4177|consen  356 VAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNA  435 (1143)
T ss_pred             HHHHhhccccccCcccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhh
Confidence            444444444332  567789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhh------HHHHhcc-chh----------HHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHH
Q 038432          393 RDY------IIFMYNL-SYD----------IIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAE  453 (602)
Q Consensus       393 ~~~------~~~~~~~-~~~----------~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~  453 (602)
                      .+.      ..+...+ ..+          ..+..-..|.||||.|++.|+.++++.|++.++..+.  ..+-+++|.|.
T Consensus       436 ~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~  515 (1143)
T KOG4177|consen  436 KAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAA  515 (1143)
T ss_pred             HhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhh
Confidence            881      1111111 111          1123346678888888888888888888888765554  77788888888


Q ss_pred             hcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeec
Q 038432          454 KRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVH  533 (602)
Q Consensus       454 ~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~  533 (602)
                      ..+...+++.++++|++++.++..|.||||.||..|+.++|++|+++|||++.+|+.|+||||.|+..|+.+++.+|..+
T Consensus       516 ~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~  595 (1143)
T KOG4177|consen  516 DEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKH  595 (1143)
T ss_pred             hhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHc
Confidence            88888888889999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cCCC
Q 038432          534 DDNS  537 (602)
Q Consensus       534 ~~~~  537 (602)
                      ++..
T Consensus       596 GA~v  599 (1143)
T KOG4177|consen  596 GASV  599 (1143)
T ss_pred             CCCC
Confidence            8433

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.94  E-value=6.6e-27  Score=210.17  Aligned_cols=241  Identities=19%  Similarity=0.249  Sum_probs=189.4

Q ss_pred             hhcCcHHHHHHHHh-cCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcH
Q 038432          339 ASTGNAAFLDELLK-ARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTA  417 (602)
Q Consensus       339 ~~~g~~~~~~~Ll~-~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tp  417 (602)
                      |+.|+.-.++..++ ..-|.|.-|..|.+|||+||+.|+..+|+.|+.+|+.+|..+                 ....||
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tn-----------------mgddtp   70 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTN-----------------MGDDTP   70 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhccccccccc-----------------CCCCcc
Confidence            44554444444444 356788889999999999999999999999999999999887                 777899


Q ss_pred             HHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHH
Q 038432          418 LWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVN  495 (602)
Q Consensus       418 Lh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~  495 (602)
                      ||+|+.+||.++|+.|++..+|+|.  ..|+||||+||..|...+++-|+..||-++..|++|.|||..|--.-...+.+
T Consensus        71 lhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e  150 (448)
T KOG0195|consen   71 LHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLE  150 (448)
T ss_pred             hhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHH
Confidence            9999999999999999999999988  78999999999999999999999999999999999999999875433333333


Q ss_pred             HHHHCCCCcccCCCC-----C------------CChhhHHHHH--HHHhhhceeeeccCCCchhHHHhhhhhhhhhhhhc
Q 038432          496 FLVMNGSDVVGANKC-----E------------FSSTNLNDML--QKREIGHRITVHDDNSTQNEVLLKKLEIIDFEAKE  556 (602)
Q Consensus       496 ~Ll~~ga~~~~~d~~-----g------------~t~l~~a~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (602)
                      .--++|-+++..-..     |            .|-.+.....  -+....+.-..+.++|.+++...+.++..+..+..
T Consensus       151 ~aek~gq~~nripfkdt~wkgtktr~rdatlsr~~gid~~~lnl~tkl~e~hsgelwrgrwqgndivakil~vr~~t~ri  230 (448)
T KOG0195|consen  151 IAEKHGQSPNRIPFKDTTWKGTKTRTRDATLSRYTGIDVSSLNLITKLAESHSGELWRGRWQGNDIVAKILNVREVTARI  230 (448)
T ss_pred             HHHHhCCCCCcccccccccccccccccccccccccCcchhhhhhhhhhccCCCcccccccccCcchhhhhhhhhhcchhh
Confidence            333467776533211     1            1112221111  11222344567788999999999999999999999


Q ss_pred             CCCCCCcceeEEEecCCCcccccccccccCeEEeccccHH
Q 038432          557 GKSKGGNCQRVSIYRGHPLVRKQACCMEAGRLIKLPNSLE  596 (602)
Q Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  596 (602)
                      .++...+++++++|.+++++|+++.|..||++..++++|.
T Consensus       231 srdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp  270 (448)
T KOG0195|consen  231 SRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMP  270 (448)
T ss_pred             cchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeecc
Confidence            9999999999999999999999999999999999988764

>PHA02792 ankyrin-like protein; Provisional

Probab=99.94  E-value=1e-26  Score=240.14  Aligned_cols=213  Identities=13%  Similarity=0.182  Sum_probs=133.2

Q ss_pred             hhhhcccccccccccCCCC--CCCCCchhhhHhhh-cCcHHHHHHHHhcCCCCC--------------------------
Q 038432          308 KKLKDLNIGDLIAESGEED--GDPNMSVNLLTVAS-TGNAAFLDELLKARLDPD--------------------------  358 (602)
Q Consensus       308 ~~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~-~g~~~~~~~Ll~~g~~~n--------------------------  358 (602)
                      ...++++++++|++.|+++  ++..+.+|+|+|+. .|+.|++++|++.|+|++                          
T Consensus        80 s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~  159 (631)
T PHA02792         80 SDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDEL  159 (631)
T ss_pred             HhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhc
Confidence            3556778888888888766  55567788888866 688899999998887632                          


Q ss_pred             ----------CCCCCCchHHHHHHhcC-------ChHHHHHHHhcccCCCchh------hHHHHhcc-------------
Q 038432          359 ----------IGDSKGRTPLHIAASKG-------HEECVLVLLKHASNVHLRD------YIIFMYNL-------------  402 (602)
Q Consensus       359 ----------~~d~~g~t~Lh~A~~~g-------~~~~v~~Ll~~g~~~~~~~------~~~~~~~~-------------  402 (602)
                                ..|..|.||||+|+.++       +.++++.|+++|++++..|      ...++...             
T Consensus       160 ~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~  239 (631)
T PHA02792        160 DDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDS  239 (631)
T ss_pred             cccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhc
Confidence                      23456888999999888       7899999999998888777      00000000             


Q ss_pred             ------------------------chh--HHH------------------------------------------------
Q 038432          403 ------------------------SYD--III------------------------------------------------  408 (602)
Q Consensus       403 ------------------------~~~--~~~------------------------------------------------  408 (602)
                                              ..+  ++.                                                
T Consensus       240 ~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v  319 (631)
T PHA02792        240 NYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTV  319 (631)
T ss_pred             cccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCc
Confidence                                    000  000                                                


Q ss_pred             ------Hh-----h---ccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CC--cchhHHHHHhcCCHH---HHHHHHHc
Q 038432          409 ------LL-----D---MNGNTALWEAISSKHHSIFRILYHCTAISDP--YT--AGDLLCTAEKRNDMS---VMEELVKY  467 (602)
Q Consensus       409 ------~~-----~---~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~--g~t~L~~A~~~~~~~---~~~~Ll~~  467 (602)
                            ..     +   ..+..+++.|+..|+.+++++|+++||+++.  ..  +.||||.|+..+..+   ++++|+++
T Consensus       320 ~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~  399 (631)
T PHA02792        320 YINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPY  399 (631)
T ss_pred             cHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhc
Confidence                  00     1   1123445566666666666666666666654  12  235666655544432   35555666


Q ss_pred             CCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHH
Q 038432          468 GLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDM  520 (602)
Q Consensus       468 ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~  520 (602)
                      |||+|.+|..|.||||+|+..++.+++++|+++|||++.+|..|.||+++|..
T Consensus       400 GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        400 IDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             CCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666654

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=8.8e-24  Score=236.39  Aligned_cols=174  Identities=15%  Similarity=0.110  Sum_probs=155.2

Q ss_pred             HHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHH
Q 038432          344 AAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAIS  423 (602)
Q Consensus       344 ~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~  423 (602)
                      .++-..+.+.+..  ..+..+.++||.||..|+.++++.|++.|+|+|..|                 ..|.||||+|+.
T Consensus       507 l~v~~ll~~~~~~--~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d-----------------~~G~TpLh~Aa~  567 (823)
T PLN03192        507 LNVGDLLGDNGGE--HDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGD-----------------SKGRTPLHIAAS  567 (823)
T ss_pred             ccHHHHHhhcccc--cCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCC-----------------CCCCCHHHHHHH
Confidence            3344445454433  244567899999999999999999999999999998                 999999999999


Q ss_pred             cCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCC
Q 038432          424 SKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNG  501 (602)
Q Consensus       424 ~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~g  501 (602)
                      .|+.+++++|+++|++++.  ..|+||||.|+..|+.+++++|++.++..+.  ..|.||||.|+..|+.+++++|+++|
T Consensus       568 ~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~G  645 (823)
T PLN03192        568 KGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQG  645 (823)
T ss_pred             cChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCC
Confidence            9999999999999999987  7899999999999999999999998887653  45789999999999999999999999


Q ss_pred             CCcccCCCCCCChhhHHHHHHHHhhhceeeeccCCCc
Q 038432          502 SDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNST  538 (602)
Q Consensus       502 a~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~  538 (602)
                      +|+|.+|.+|.||||+|+..++.++++.|+.++++..
T Consensus       646 adin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~  682 (823)
T PLN03192        646 LNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVD  682 (823)
T ss_pred             CCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC
Confidence            9999999999999999999999999999998876544

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.93  E-value=7.9e-26  Score=195.48  Aligned_cols=183  Identities=19%  Similarity=0.171  Sum_probs=164.6

Q ss_pred             cccccccccCC--CCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCC
Q 038432          314 NIGDLIAESGE--EDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVH  391 (602)
Q Consensus       314 ~~~~~l~~~~~--~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~  391 (602)
                      .....++..+.  +..+--+++|+.+++...+++.+..+.++  .+|..|+.|.|||.||+..|+.++|++|++.|||++
T Consensus       110 ~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~  187 (296)
T KOG0502|consen  110 DKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPD  187 (296)
T ss_pred             ceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHhcCchHHHHHHHHcCCChh
Confidence            33344444443  33455678999999999988887666554  689999999999999999999999999999999999


Q ss_pred             chhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCC
Q 038432          392 LRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGL  469 (602)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga  469 (602)
                      ...                 +...|+|.+|++.|..++|++|+.++.|+|.  .+|.|||-+|++.|+.+|++.|++.||
T Consensus       188 ~lg-----------------k~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGA  250 (296)
T KOG0502|consen  188 ALG-----------------KYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGA  250 (296)
T ss_pred             hhh-----------------hhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCC
Confidence            987                 8889999999999999999999999999998  899999999999999999999999999


Q ss_pred             CCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhh
Q 038432          470 NVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTN  516 (602)
Q Consensus       470 ~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~  516 (602)
                      |++..|..|++++..|+..|+. +|+..+++-++.+.+|+.-.||+|
T Consensus       251 d~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  251 DVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             CcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcccCCCCCC
Confidence            9999999999999999999998 999999999999999999999986

>PHA02792 ankyrin-like protein; Provisional

Probab=99.93  E-value=2e-24  Score=223.35  Aligned_cols=180  Identities=15%  Similarity=0.158  Sum_probs=140.3

Q ss_pred             CCCCCCchhhhHhhhcC-------cHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcC--ChHHHHHHHhccc--------
Q 038432          326 DGDPNMSVNLLTVASTG-------NAAFLDELLKARLDPDIGDSKGRTPLHIAASKG--HEECVLVLLKHAS--------  388 (602)
Q Consensus       326 ~~~~~g~t~L~~A~~~g-------~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g--~~~~v~~Ll~~g~--------  388 (602)
                      .++..|.||||+|+..+       +.++++.|+++|++++..|..|.||||+|+.+.  ..|++++|++..-        
T Consensus       170 ~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~  249 (631)
T PHA02792        170 YDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNI  249 (631)
T ss_pred             cCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhH
Confidence            45677899999999988       789999999999999999999999999998888  6777777765311        


Q ss_pred             --------------CCC--chh----------------------------------------------------------
Q 038432          389 --------------NVH--LRD----------------------------------------------------------  394 (602)
Q Consensus       389 --------------~~~--~~~----------------------------------------------------------  394 (602)
                                    +++  ..+                                                          
T Consensus       250 l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId  329 (631)
T PHA02792        250 LSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMID  329 (631)
T ss_pred             HHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence                          011  000                                                          


Q ss_pred             -------------hHHHHhccchhHHHH----------hhcc--CCcHHHHHHHcCCh---hHHHHHHhcCCCCCC--CC
Q 038432          395 -------------YIIFMYNLSYDIIIL----------LDMN--GNTALWEAISSKHH---SIFRILYHCTAISDP--YT  444 (602)
Q Consensus       395 -------------~~~~~~~~~~~~~~~----------~~~~--g~tpLh~A~~~~~~---~~~~~Ll~~g~~~~~--~~  444 (602)
                                   ...++..++.++++.          .|..  |.||||+|+..+..   +++++|+++|+++|.  ..
T Consensus       330 ~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~  409 (631)
T PHA02792        330 EGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKH  409 (631)
T ss_pred             CCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCcccccccc
Confidence                         111223344444433          2444  46999998877665   468899999999998  78


Q ss_pred             cchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHH--c--------CcHHHHHHHHHCCCCcc
Q 038432          445 AGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMA--E--------NNVEMVNFLVMNGSDVV  505 (602)
Q Consensus       445 g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~--~--------~~~~iv~~Ll~~ga~~~  505 (602)
                      |.||||+|+..++.+++++|+++|+++|.+|..|+||||+|+.  .        ...+++++|+++|.+++
T Consensus       410 G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        410 GRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIE  480 (631)
T ss_pred             CcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChh
Confidence            9999999999999999999999999999999999999999986  2        23577999999998876

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.92  E-value=4.7e-25  Score=215.89  Aligned_cols=169  Identities=25%  Similarity=0.294  Sum_probs=137.8

Q ss_pred             hhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccC
Q 038432          335 LLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNG  414 (602)
Q Consensus       335 L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g  414 (602)
                      +.-|+..|+.+-+..|+..|+++|..+.+|.|+||-||...+.+||++|+++|++||..|                 ..|
T Consensus        44 ~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d-----------------~e~  106 (527)
T KOG0505|consen   44 FLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQD-----------------NEG  106 (527)
T ss_pred             HHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccc-----------------ccc
Confidence            455666777777777777777777777777777777777777777777777777777776                 677


Q ss_pred             CcHHHHHHHcCChhHHHHHHhcCCCC------------------------------------------------------
Q 038432          415 NTALWEAISSKHHSIFRILYHCTAIS------------------------------------------------------  440 (602)
Q Consensus       415 ~tpLh~A~~~~~~~~~~~Ll~~g~~~------------------------------------------------------  440 (602)
                      +||||.|+..|+..++++|+++|+++                                                      
T Consensus       107 wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~  186 (527)
T KOG0505|consen  107 WTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLN  186 (527)
T ss_pred             CCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHh
Confidence            77777777777777777777666532                                                      


Q ss_pred             -----CC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCC
Q 038432          441 -----DP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFS  513 (602)
Q Consensus       441 -----~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t  513 (602)
                           +.  ..|.|.||.|+.+|..++.++|+++|.+++.+|.+|+||||.|+..|..+++++|+++|++++.++..|.|
T Consensus       187 ~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~  266 (527)
T KOG0505|consen  187 AGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGET  266 (527)
T ss_pred             ccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCC
Confidence                 11  24889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHH
Q 038432          514 STNLNDM  520 (602)
Q Consensus       514 ~l~~a~~  520 (602)
                      |+++|..
T Consensus       267 p~dv~de  273 (527)
T KOG0505|consen  267 PLDVADE  273 (527)
T ss_pred             Cccchhh
Confidence            9999864

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.92  E-value=2.6e-24  Score=192.69  Aligned_cols=144  Identities=18%  Similarity=0.163  Sum_probs=127.0

Q ss_pred             cCCCCCCCCCCCchHHHHHHhcCCh----HHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChh
Q 038432          353 ARLDPDIGDSKGRTPLHIAASKGHE----ECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHS  428 (602)
Q Consensus       353 ~g~~~n~~d~~g~t~Lh~A~~~g~~----~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~  428 (602)
                      +|++++..+.++.++||.||+.|+.    +++++|++.|++++..|                 ..|+||||+|+..|+.+
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d-----------------~~g~t~Lh~Aa~~g~~~   71 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYD-----------------HHGRQCTHMVAWYDRAN   71 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccC-----------------CCCCcHHHHHHHhCccC
Confidence            4677777888888999999999987    66667888888888877                 88999999999988765


Q ss_pred             H---HHHHHhcCCCCCC---CCcchhHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCC
Q 038432          429 I---FRILYHCTAISDP---YTAGDLLCTAEKRNDMSVMEELVK-YGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNG  501 (602)
Q Consensus       429 ~---~~~Ll~~g~~~~~---~~g~t~L~~A~~~~~~~~~~~Ll~-~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~g  501 (602)
                      .   +++|+++|++++.   ..|.||||+|+..|+.+++++|+. .|++++.+|..|.||||+|+..++.+++++|+++|
T Consensus        72 ~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g  151 (166)
T PHA02743         72 AVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANG  151 (166)
T ss_pred             HHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            4   7899999998887   258899999999999999999995 89999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCC
Q 038432          502 SDVVGANKCEFS  513 (602)
Q Consensus       502 a~~~~~d~~g~t  513 (602)
                      ++++.++..|.+
T Consensus       152 a~~~~~~~~~~~  163 (166)
T PHA02743        152 AVCDDPLSIGLS  163 (166)
T ss_pred             CCCCCcccCCcc
Confidence            999999988864

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=3.4e-25  Score=205.71  Aligned_cols=160  Identities=21%  Similarity=0.283  Sum_probs=146.9

Q ss_pred             CCCCCCCCchHHHHHHhcCChHHHHHHHhcc-cCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHc-----CChhHH
Q 038432          357 PDIGDSKGRTPLHIAASKGHEECVLVLLKHA-SNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISS-----KHHSIF  430 (602)
Q Consensus       357 ~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~-----~~~~~~  430 (602)
                      +|..|.+|+|+||||+.+++.++|+.||+.| +++|..+                 +-|+||+++|+..     .+.++|
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qN-----------------rAGYtpiMLaALA~lk~~~d~~vV  323 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQN-----------------RAGYTPVMLAALAKLKQPADRTVV  323 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccc-----------------cccccHHHHHHHHhhcchhhHHHH
Confidence            6889999999999999999999999999986 5888887                 9999999999864     467788


Q ss_pred             HHHHhcCCCCCC---CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHC-CCCccc
Q 038432          431 RILYHCTAISDP---YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMN-GSDVVG  506 (602)
Q Consensus       431 ~~Ll~~g~~~~~---~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~-ga~~~~  506 (602)
                      .-|.+.| |+|.   ..|.|+|++|+..|+.++++.||..|||+|.+|.+|.|+|+.||.+||.||+++||.. ++|+..
T Consensus       324 ~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sL  402 (452)
T KOG0514|consen  324 ERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISL  402 (452)
T ss_pred             HHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCccccee
Confidence            8888876 4554   7899999999999999999999999999999999999999999999999999999985 899999


Q ss_pred             CCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432          507 ANKCEFSSTNLNDMLQKREIGHRITVHD  534 (602)
Q Consensus       507 ~d~~g~t~l~~a~~~~~~~~~~~l~~~~  534 (602)
                      .|.+|-|+|.+|...|++||+..|..+.
T Consensus       403 tD~DgSTAl~IAleagh~eIa~mlYa~~  430 (452)
T KOG0514|consen  403 TDVDGSTALSIALEAGHREIAVMLYAHM  430 (452)
T ss_pred             ecCCCchhhhhHHhcCchHHHHHHHHHH
Confidence            9999999999999999999988887664

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=2.1e-24  Score=240.36  Aligned_cols=216  Identities=19%  Similarity=0.086  Sum_probs=149.9

Q ss_pred             hhhhhccccccccccc--CC--CCCCCCCchhhh-HhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcC---ChH
Q 038432          307 HKKLKDLNIGDLIAES--GE--EDGDPNMSVNLL-TVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKG---HEE  378 (602)
Q Consensus       307 ~~~~~~~~~~~~l~~~--~~--~~~~~~g~t~L~-~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g---~~~  378 (602)
                      +...++....+.+++.  +.  +..+..|+|||| .|+.+++.++++.|++.|+    .+..|.||||.|+..+   ..+
T Consensus        24 A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~~~~~~v~~   99 (743)
T TIGR00870        24 AAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISLEYVDAVEA   99 (743)
T ss_pred             HHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHhccHHHHHH
Confidence            4444444444444443  22  224566777777 6666667777777777665    4566777777766521   122


Q ss_pred             HHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC----------------
Q 038432          379 CVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP----------------  442 (602)
Q Consensus       379 ~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~----------------  442 (602)
                      +++.+...+.+.+.....       .+.....+..|.||||+|+.+|+.+++++|+++|++++.                
T Consensus       100 ll~~l~~~~~~~~~~~~~-------~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~  172 (743)
T TIGR00870       100 ILLHLLAAFRKSGPLELA-------NDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSF  172 (743)
T ss_pred             HHHHHhhcccccCchhhh-------ccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcc
Confidence            223333222111000000       000001124699999999999999999999999999874                


Q ss_pred             CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcC---------cHHHHHHHHHCCCCc-------cc
Q 038432          443 YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAEN---------NVEMVNFLVMNGSDV-------VG  506 (602)
Q Consensus       443 ~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~---------~~~iv~~Ll~~ga~~-------~~  506 (602)
                      ..|.||||.|+..|+.+++++|+++|+|+|.+|..|+||||+|+..+         ...+.+++++.+++.       +.
T Consensus       173 ~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i  252 (743)
T TIGR00870       173 YHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVI  252 (743)
T ss_pred             cccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhh
Confidence            25889999999999999999999999999999999999999999986         234666777665554       77


Q ss_pred             CCCCCCChhhHHHHHHHHhhhceeeec
Q 038432          507 ANKCEFSSTNLNDMLQKREIGHRITVH  533 (602)
Q Consensus       507 ~d~~g~t~l~~a~~~~~~~~~~~l~~~  533 (602)
                      .|.+|.||||+|+..++.++++.++..
T Consensus       253 ~N~~g~TPL~~A~~~g~~~l~~lLL~~  279 (743)
T TIGR00870       253 LNHQGLTPLKLAAKEGRIVLFRLKLAI  279 (743)
T ss_pred             cCCCCCCchhhhhhcCCccHHHHHHHH
Confidence            899999999999999999988888764

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.89  E-value=3.9e-23  Score=192.08  Aligned_cols=163  Identities=24%  Similarity=0.280  Sum_probs=147.7

Q ss_pred             ccCCCCCCCCCchhhhHhhhcCcHHHHHHHHhcC-CCCCCCCCCCchHHHHHHhc-----CChHHHHHHHhcccCCCchh
Q 038432          321 ESGEEDGDPNMSVNLLTVASTGNAAFLDELLKAR-LDPDIGDSKGRTPLHIAASK-----GHEECVLVLLKHASNVHLRD  394 (602)
Q Consensus       321 ~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g-~~~n~~d~~g~t~Lh~A~~~-----g~~~~v~~Ll~~g~~~~~~~  394 (602)
                      +...+..|.+|.|+||+|+.+++.++|+.||+.| +++|.+|.-|.||.++|+..     .+.++|..|...| |+|++-
T Consensus       258 ~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKA  336 (452)
T KOG0514|consen  258 EYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKA  336 (452)
T ss_pred             HHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhh
Confidence            3345668999999999999999999999999987 79999999999999999854     4678898888765 777765


Q ss_pred             hHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHc-CCCC
Q 038432          395 YIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKY-GLNV  471 (602)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~-ga~~  471 (602)
                                      -..|.|+|++|+.+|+.++|+.||.+|||+|.  .+|.|+|++|+..|+.+++++||.. +.|+
T Consensus       337 ----------------sQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~  400 (452)
T KOG0514|consen  337 ----------------SQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDI  400 (452)
T ss_pred             ----------------hhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccc
Confidence                            37899999999999999999999999999998  8999999999999999999999974 7899


Q ss_pred             CCCCCCCcCHHHHHHHcCcHHHHHHHHHC
Q 038432          472 DSKDRHGRTAIEIAMAENNVEMVNFLVMN  500 (602)
Q Consensus       472 n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~  500 (602)
                      ...|.+|.|+|.+|...|+.||.-+|-.+
T Consensus       401 sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  401 SLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             eeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            99999999999999999999999998754

>PHA02741 hypothetical protein; Provisional

Probab=99.89  E-value=1.5e-22  Score=182.32  Aligned_cols=132  Identities=20%  Similarity=0.208  Sum_probs=117.6

Q ss_pred             CCCCCCCCchHHHHHHhcCChHHHHHHHh------cccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCC----
Q 038432          357 PDIGDSKGRTPLHIAASKGHEECVLVLLK------HASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKH----  426 (602)
Q Consensus       357 ~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~----  426 (602)
                      ++.+|..|.||||+|+..|+.++++.|+.      .|++++.+|                 ..|.||||+|+..|+    
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d-----------------~~g~T~Lh~A~~~g~~~~~   76 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATD-----------------DAGQMCIHIAAEKHEAQLA   76 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccC-----------------CCCCcHHHHHHHcCChHHH
Confidence            45578899999999999999999999864      368888887                 899999999999998    


Q ss_pred             hhHHHHHHhcCCCCCC--C-CcchhHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCC
Q 038432          427 HSIFRILYHCTAISDP--Y-TAGDLLCTAEKRNDMSVMEELVK-YGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGS  502 (602)
Q Consensus       427 ~~~~~~Ll~~g~~~~~--~-~g~t~L~~A~~~~~~~~~~~Ll~-~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga  502 (602)
                      .+++++|+++|++++.  . .|+||||+|+..++.+++++|++ .|++++.+|.+|+||||+|+..++.+++++|++.++
T Consensus        77 ~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         77 AEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             HHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence            5889999999999987  2 78999999999999999999997 599999999999999999999999999999998876


Q ss_pred             Ccc
Q 038432          503 DVV  505 (602)
Q Consensus       503 ~~~  505 (602)
                      ...
T Consensus       157 ~~~  159 (169)
T PHA02741        157 TSR  159 (169)
T ss_pred             Hhc
Confidence            643

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.88  E-value=6.2e-23  Score=207.85  Aligned_cols=201  Identities=23%  Similarity=0.252  Sum_probs=176.9

Q ss_pred             HHHhhhhhhcccccccccccCC--CCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHH
Q 038432          303 FLQQHKKLKDLNIGDLIAESGE--EDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECV  380 (602)
Q Consensus       303 ll~~~~~~~~~~~~~~l~~~~~--~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v  380 (602)
                      +++.+.-.++..+.+++.+..+  +..+..|.+|||+|+..|+.++++.++.++..+|..+..|.||||.|+++||.+++
T Consensus        52 alhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv  131 (854)
T KOG0507|consen   52 LLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVV  131 (854)
T ss_pred             HHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHH
Confidence            3455555566666666666553  34667889999999999999999999999989999999999999999999999999


Q ss_pred             HHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCC----------CCCCCcchhHH
Q 038432          381 LVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAI----------SDPYTAGDLLC  450 (602)
Q Consensus       381 ~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~----------~~~~~g~t~L~  450 (602)
                      .+|+.+|+|+-..+                 +.+.|+|..|++.|..++++.|++..-+          .....+.+|||
T Consensus       132 ~~Ll~~~adp~i~n-----------------ns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plH  194 (854)
T KOG0507|consen  132 FYLLKKNADPFIRN-----------------NSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLH  194 (854)
T ss_pred             HHHHhcCCCccccC-----------------cccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcc
Confidence            99999999999998                 9999999999999999999999976221          11256678999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHH
Q 038432          451 TAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDML  521 (602)
Q Consensus       451 ~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~  521 (602)
                      .|+++|+.++++.|++.|.|+|.....| |+||.|+..|..++|.+|++.|.+..++|.+|.|+|++-...
T Consensus       195 laakngh~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~  264 (854)
T KOG0507|consen  195 LAAKNGHVECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDL  264 (854)
T ss_pred             hhhhcchHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhc
Confidence            9999999999999999999999887776 999999999999999999999999999999999999986544

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.88  E-value=4.5e-23  Score=208.83  Aligned_cols=195  Identities=20%  Similarity=0.149  Sum_probs=178.4

Q ss_pred             CCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchh
Q 038432          326 DGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYD  405 (602)
Q Consensus       326 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~  405 (602)
                      ..+.+|.|.||.|+.+|+.++.+.|++..+-++..|..|.+|||+|+..|+.++|+.|+.++..+|..+           
T Consensus        44 ~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~-----------  112 (854)
T KOG0507|consen   44 LQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVN-----------  112 (854)
T ss_pred             ccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCccc-----------
Confidence            377899999999999999999999999999999999999999999999999999999999999999998           


Q ss_pred             HHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCC--------CCCC
Q 038432          406 IIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNV--------DSKD  475 (602)
Q Consensus       406 ~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~--------n~~d  475 (602)
                            ..|.||||.|+++||.+++.+|+++|+|+-.  ..+.|+|-.|++.|..++++.|++...++        ..++
T Consensus       113 ------~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~  186 (854)
T KOG0507|consen  113 ------IENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRP  186 (854)
T ss_pred             ------ccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCC
Confidence                  8999999999999999999999999999877  78999999999999999999999773322        3456


Q ss_pred             CCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeeccCCCc
Q 038432          476 RHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNST  538 (602)
Q Consensus       476 ~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~  538 (602)
                      -.+-+|||.|+++|+.++++.|++.|.|+|...++| |+||-|+..|..+++..++..+.+..
T Consensus       187 ~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~h  248 (854)
T KOG0507|consen  187 FPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTH  248 (854)
T ss_pred             CCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccc
Confidence            678899999999999999999999999999887776 99999999999999999887765443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.88  E-value=3.1e-22  Score=179.20  Aligned_cols=138  Identities=22%  Similarity=0.172  Sum_probs=123.8

Q ss_pred             CCCCCchhhhHhhhcCcH----HHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHH---HHHHHhcccCCCchhhHHHH
Q 038432          327 GDPNMSVNLLTVASTGNA----AFLDELLKARLDPDIGDSKGRTPLHIAASKGHEEC---VLVLLKHASNVHLRDYIIFM  399 (602)
Q Consensus       327 ~~~~g~t~L~~A~~~g~~----~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~---v~~Ll~~g~~~~~~~~~~~~  399 (602)
                      .+.++.++||.||+.|+.    ++++.|++.|++++..|..|+||||+|+..|+.+.   +++|+++|+++|.++     
T Consensus        16 ~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d-----   90 (166)
T PHA02743         16 IDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARE-----   90 (166)
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCC-----
Confidence            455678899999999998    56667778899999999999999999999998764   899999999999986     


Q ss_pred             hccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHh-cCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCC
Q 038432          400 YNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYH-CTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDR  476 (602)
Q Consensus       400 ~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~-~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~  476 (602)
                                 +..|.||||+|+..|+.+++++|++ .|++++.  ..|.||||+|+..++.+++++|+++|+++|.++.
T Consensus        91 -----------~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~  159 (166)
T PHA02743         91 -----------LGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLS  159 (166)
T ss_pred             -----------CCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccc
Confidence                       2479999999999999999999995 8999887  7899999999999999999999999999999998


Q ss_pred             CCcC
Q 038432          477 HGRT  480 (602)
Q Consensus       477 ~g~T  480 (602)
                      .|..
T Consensus       160 ~~~~  163 (166)
T PHA02743        160 IGLS  163 (166)
T ss_pred             CCcc
Confidence            8753

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.88  E-value=2.9e-22  Score=192.83  Aligned_cols=151  Identities=14%  Similarity=0.082  Sum_probs=105.1

Q ss_pred             CCCCch-hhhHhhhcCcHHHHHHHHhcCCCCCCCC----CCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhcc
Q 038432          328 DPNMSV-NLLTVASTGNAAFLDELLKARLDPDIGD----SKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNL  402 (602)
Q Consensus       328 ~~~g~t-~L~~A~~~g~~~~~~~Ll~~g~~~n~~d----~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~  402 (602)
                      +..|.| +||.|+..|+.++++.|++.|+|+|.++    ..|.||||+|+..|+.+++++|+++|||+|..+        
T Consensus        29 d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~--------  100 (300)
T PHA02884         29 NKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYA--------  100 (300)
T ss_pred             CcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCccc--------
Confidence            344444 4555666677777887777777777763    467778888877777788887777777777653        


Q ss_pred             chhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 038432          403 SYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRT  480 (602)
Q Consensus       403 ~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~T  480 (602)
                              +..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..++.+++..+.  |..   .+..+.+
T Consensus       101 --------~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~---~~~~~~~  167 (300)
T PHA02884        101 --------EEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--DNE---ISNFYKH  167 (300)
T ss_pred             --------CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CCc---ccccccC
Confidence                    14677777777777777777777777777776  56777777777777776664443  222   3455667


Q ss_pred             HHHHHHHcCcHHHHHHHHHCCC
Q 038432          481 AIEIAMAENNVEMVNFLVMNGS  502 (602)
Q Consensus       481 pLh~A~~~~~~~iv~~Ll~~ga  502 (602)
                      |++++   ++.+++++|+++++
T Consensus       168 ~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        168 PKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             hhhhh---ccHHHHHHHHHHHH
Confidence            77764   35777777777766

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.88  E-value=2.1e-22  Score=178.89  Aligned_cols=137  Identities=15%  Similarity=0.154  Sum_probs=112.9

Q ss_pred             CCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCCh---hHHHHH
Q 038432          357 PDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHH---SIFRIL  433 (602)
Q Consensus       357 ~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~---~~~~~L  433 (602)
                      .+.+|.+|.||||+||..|+  ++.++...+...+..          ...+...|..|.||||+|+..|+.   +++++|
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~--~~~l~~~~~~~~~~~----------~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~L   77 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGG--VTDLLAFKNAISDEN----------RYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLL   77 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCC--HHHHHHHHHHhcchh----------HHHHHHhcCCCCEEEEeecccCchhHHHHHHHH
Confidence            45678899999999999998  444444443322211          011223358999999999999987   468899


Q ss_pred             HhcCCCCCC---CCcchhHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcc
Q 038432          434 YHCTAISDP---YTAGDLLCTAEKRNDMSVMEELVK-YGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVV  505 (602)
Q Consensus       434 l~~g~~~~~---~~g~t~L~~A~~~~~~~~~~~Ll~-~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~  505 (602)
                      +++|++++.   ..|+||||+|+..|+.+++++|++ .|+++|.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus        78 l~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         78 MEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             HHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            999999987   369999999999999999999998 599999999999999999999999999999999999876

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.87  E-value=5.8e-22  Score=190.74  Aligned_cols=157  Identities=13%  Similarity=0.065  Sum_probs=129.7

Q ss_pred             CCCCCCCCch-HHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHh
Q 038432          357 PDIGDSKGRT-PLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYH  435 (602)
Q Consensus       357 ~n~~d~~g~t-~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~  435 (602)
                      +-.+|..|.| +||.|+..|+.+++++|+++|+|+|..+.             ..+..|.||||+|+..|+.+++++|++
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~-------------~sd~~g~TpLh~Aa~~~~~eivklLL~   91 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFP-------------LSENSKTNPLIYAIDCDNDDAAKLLIR   91 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCc-------------ccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            3456777776 56777788999999999999999998730             002689999999999999999999999


Q ss_pred             cCCCCCC---CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCC
Q 038432          436 CTAISDP---YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEF  512 (602)
Q Consensus       436 ~g~~~~~---~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~  512 (602)
                      +||+++.   ..|.||||.|+..|+.+++++|+++|+++|.+|..|.||||+|+..++.+++.++.  |..   .+..+.
T Consensus        92 ~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~---~~~~~~  166 (300)
T PHA02884         92 YGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--DNE---ISNFYK  166 (300)
T ss_pred             cCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CCc---cccccc
Confidence            9999997   35899999999999999999999999999999999999999999999999886665  332   466778


Q ss_pred             ChhhHHHHHHHHhhhceeeecc
Q 038432          513 SSTNLNDMLQKREIGHRITVHD  534 (602)
Q Consensus       513 t~l~~a~~~~~~~~~~~l~~~~  534 (602)
                      +|.+++   .+.++++.|+.+.
T Consensus       167 ~~~~~~---~n~ei~~~Lish~  185 (300)
T PHA02884        167 HPKKIL---INFDILKILVSHF  185 (300)
T ss_pred             Chhhhh---ccHHHHHHHHHHH
Confidence            888865   2455555555444

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.87  E-value=5.7e-22  Score=165.24  Aligned_cols=138  Identities=23%  Similarity=0.197  Sum_probs=125.9

Q ss_pred             HHHHHHhcCChHHHHHHHhcccC-CCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--C
Q 038432          367 PLHIAASKGHEECVLVLLKHASN-VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--Y  443 (602)
Q Consensus       367 ~Lh~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~  443 (602)
                      .+.+|+..+....|+.||+..++ +|.+|                 .+|.||||.|+++|+.+||+.|+..||+++.  .
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD-----------------~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~  128 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRD-----------------EDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTN  128 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccc-----------------cccccHHHHHHhcCchHHHHHHHHccCCcccccc
Confidence            46799999999999999987664 78887                 9999999999999999999999999999998  8


Q ss_pred             CcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcH-HHHHHHHH-CCCCcccCCCCCCChhhHHHHH
Q 038432          444 TAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNV-EMVNFLVM-NGSDVVGANKCEFSSTNLNDML  521 (602)
Q Consensus       444 ~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~-~iv~~Ll~-~ga~~~~~d~~g~t~l~~a~~~  521 (602)
                      .||||||.||+.++.+++-.|+++|+|||+......||||+||...+. ..+.+|+. .+.++-.++..+.||+.+|.+.
T Consensus       129 ~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  129 EGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRT  208 (228)
T ss_pred             cCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHh
Confidence            999999999999999999999999999999999999999999988775 56666664 6899999999999999999655

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.86  E-value=1.9e-21  Score=162.20  Aligned_cols=141  Identities=23%  Similarity=0.189  Sum_probs=126.8

Q ss_pred             hhhhHhhhcCcHHHHHHHHhcCCC-CCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhh
Q 038432          333 VNLLTVASTGNAAFLDELLKARLD-PDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLD  411 (602)
Q Consensus       333 t~L~~A~~~g~~~~~~~Ll~~g~~-~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~  411 (602)
                      ..+.+|+..+.+..|+.||+..++ +|.+|.+|.||||-|+++|+.+||+.|+..|||++.+.                 
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T-----------------  127 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKT-----------------  127 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCccccc-----------------
Confidence            357789999999999999997665 89999999999999999999999999999999999998                 


Q ss_pred             ccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCC-HHHHHHHH-HcCCCCCCCCCCCcCHHHHHHH
Q 038432          412 MNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRND-MSVMEELV-KYGLNVDSKDRHGRTAIEIAMA  487 (602)
Q Consensus       412 ~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~-~~~~~~Ll-~~ga~~n~~d~~g~TpLh~A~~  487 (602)
                      ..|+||||-||.-++.+++..|+++|+|+|.  ....||||.||...+ ...+++|+ +.+.++-.++..+.||+.+|-+
T Consensus       128 ~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARR  207 (228)
T KOG0512|consen  128 NEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARR  207 (228)
T ss_pred             ccCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHH
Confidence            9999999999999999999999999999999  666799999998876 45666665 4678888899999999999977


Q ss_pred             cCc
Q 038432          488 ENN  490 (602)
Q Consensus       488 ~~~  490 (602)
                      .+-
T Consensus       208 T~~  210 (228)
T KOG0512|consen  208 TSM  210 (228)
T ss_pred             hhh
Confidence            653

>PHA02741 hypothetical protein; Provisional

Probab=99.86  E-value=3.8e-21  Score=173.17  Aligned_cols=130  Identities=18%  Similarity=0.171  Sum_probs=117.7

Q ss_pred             CCCCCCchhhhHhhhcCcHHHHHHHHh------cCCCCCCCCCCCchHHHHHHhcCC----hHHHHHHHhcccCCCchhh
Q 038432          326 DGDPNMSVNLLTVASTGNAAFLDELLK------ARLDPDIGDSKGRTPLHIAASKGH----EECVLVLLKHASNVHLRDY  395 (602)
Q Consensus       326 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~------~g~~~n~~d~~g~t~Lh~A~~~g~----~~~v~~Ll~~g~~~~~~~~  395 (602)
                      .++..|.||||+|++.|+.++++.|+.      .|++++.+|..|+||||+|+..|+    .+++++|+++|+++|.++ 
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~-   94 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE-   94 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC-
Confidence            346789999999999999999999853      368899999999999999999999    589999999999999886 


Q ss_pred             HHHHhccchhHHHHhhc-cCCcHHHHHHHcCChhHHHHHHh-cCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCC
Q 038432          396 IIFMYNLSYDIIILLDM-NGNTALWEAISSKHHSIFRILYH-CTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNV  471 (602)
Q Consensus       396 ~~~~~~~~~~~~~~~~~-~g~tpLh~A~~~~~~~~~~~Ll~-~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~  471 (602)
                                      . .|+||||+|+..++.+++++|++ .|++++.  ..|+||||+|+..++.+++++|++.++..
T Consensus        95 ----------------~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741         95 ----------------MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVATS  158 (169)
T ss_pred             ----------------cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHh
Confidence                            5 89999999999999999999997 5888876  78999999999999999999999987654


Q ss_pred             C
Q 038432          472 D  472 (602)
Q Consensus       472 n  472 (602)
                      .
T Consensus       159 ~  159 (169)
T PHA02741        159 R  159 (169)
T ss_pred             c
Confidence            3

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.85  E-value=5.2e-21  Score=196.85  Aligned_cols=192  Identities=24%  Similarity=0.246  Sum_probs=164.0

Q ss_pred             CCchhhhHhhhcCcHHHHHHHHhcC---------CCCCCCCCCCchHHHHHHh---cCChHHHHHHHhcccCCCchhhHH
Q 038432          330 NMSVNLLTVASTGNAAFLDELLKAR---------LDPDIGDSKGRTPLHIAAS---KGHEECVLVLLKHASNVHLRDYII  397 (602)
Q Consensus       330 ~g~t~L~~A~~~g~~~~~~~Ll~~g---------~~~n~~d~~g~t~Lh~A~~---~g~~~~v~~Ll~~g~~~~~~~~~~  397 (602)
                      ..+.++..|...+.++.+..++..+         .+++.+...|.|.||.|..   .++.++++.|++.-...  .+   
T Consensus       100 ~d~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~l--in---  174 (782)
T KOG3676|consen  100 FDRDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKL--IN---  174 (782)
T ss_pred             cchhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHH--hh---
Confidence            3347788999999998888887655         6788888999999999986   45679999999863210  00   


Q ss_pred             HHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC-------------------------CCcchhHHHH
Q 038432          398 FMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP-------------------------YTAGDLLCTA  452 (602)
Q Consensus       398 ~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~-------------------------~~g~t~L~~A  452 (602)
                      .       +-......|.||||+|+.+.+.++|++|++.|||++.                         +-|+.||..|
T Consensus       175 d-------~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfA  247 (782)
T KOG3676|consen  175 D-------IYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFA  247 (782)
T ss_pred             h-------hhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHH
Confidence            0       0001136799999999999999999999999999874                         1366799999


Q ss_pred             HhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCC--cccCCCCCCChhhHHHHHHHHhhhcee
Q 038432          453 EKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSD--VVGANKCEFSSTNLNDMLQKREIGHRI  530 (602)
Q Consensus       453 ~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~--~~~~d~~g~t~l~~a~~~~~~~~~~~l  530 (602)
                      |..++++++++|+++|||+|++|++|+|.||..+..-..++..+++++|++  ...+|++|.|||.+|+..|+.++.+.+
T Consensus       248 AC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~i  327 (782)
T KOG3676|consen  248 ACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHI  327 (782)
T ss_pred             HHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999  999999999999999999999998888


Q ss_pred             eec
Q 038432          531 TVH  533 (602)
Q Consensus       531 ~~~  533 (602)
                      +..
T Consensus       328 le~  330 (782)
T KOG3676|consen  328 LER  330 (782)
T ss_pred             HHh
Confidence            766

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.84  E-value=5e-21  Score=213.29  Aligned_cols=214  Identities=17%  Similarity=0.069  Sum_probs=156.0

Q ss_pred             HHHH-hhhhhhcccccccccccCCCCCCCCCchhhhHhhhcC---cHHHHHHHHhcCCC------CCC----CCCCCchH
Q 038432          302 NFLQ-QHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTG---NAAFLDELLKARLD------PDI----GDSKGRTP  367 (602)
Q Consensus       302 ~ll~-~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~A~~~g---~~~~~~~Ll~~g~~------~n~----~d~~g~t~  367 (602)
                      +.++ .+...+..++.++|.+.+.  .+..|.||||.|+..+   ...++..+...+.+      ++.    .+..|.||
T Consensus        54 t~Lh~~A~~~~~~eiv~lLl~~g~--~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~Tp  131 (743)
T TIGR00870        54 SALFVAAIENENLELTELLLNLSC--RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITA  131 (743)
T ss_pred             hHHHHHHHhcChHHHHHHHHhCCC--CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcH
Confidence            3444 5556666777777777665  5678999999998722   22344444444322      111    23569999


Q ss_pred             HHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCc
Q 038432          368 LHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTA  445 (602)
Q Consensus       368 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g  445 (602)
                      ||+||..|+.++|++|+++|+|++.++..........   ......|.||||.|+..|+.+++++|+++|+|++.  ..|
T Consensus       132 LhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~---~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g  208 (743)
T TIGR00870       132 LHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQG---VDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLG  208 (743)
T ss_pred             HHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCC---CCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhh
Confidence            9999999999999999999999997641100000000   00014689999999999999999999999999987  789


Q ss_pred             chhHHHHHhcC---------CHHHHHHHHHcCCCC-------CCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCC
Q 038432          446 GDLLCTAEKRN---------DMSVMEELVKYGLNV-------DSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK  509 (602)
Q Consensus       446 ~t~L~~A~~~~---------~~~~~~~Ll~~ga~~-------n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~  509 (602)
                      +||||+|+..+         ...+.+++++.+++.       +..|.+|.||||+|+..|+.+++++|++.+++......
T Consensus       209 ~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~~kk~~a  288 (743)
T TIGR00870       209 NTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQKKFVA  288 (743)
T ss_pred             hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHhcceeec
Confidence            99999999987         234566666665554       66799999999999999999999999997766655566


Q ss_pred             CCCChhhHHHH
Q 038432          510 CEFSSTNLNDM  520 (602)
Q Consensus       510 ~g~t~l~~a~~  520 (602)
                      +...|.+++..
T Consensus       289 ~~~~~~~~~~~  299 (743)
T TIGR00870       289 WPNGQQLLSLY  299 (743)
T ss_pred             cCcchHhHhhh
Confidence            66677766544

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.84  E-value=4.8e-21  Score=170.12  Aligned_cols=127  Identities=16%  Similarity=0.191  Sum_probs=108.0

Q ss_pred             HHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCC---------CCCcchhHHHHHhcCCH---HHHHHHHHcCCCCCCC
Q 038432          407 IILLDMNGNTALWEAISSKHHSIFRILYHCTAISD---------PYTAGDLLCTAEKRNDM---SVMEELVKYGLNVDSK  474 (602)
Q Consensus       407 ~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~---------~~~g~t~L~~A~~~~~~---~~~~~Ll~~ga~~n~~  474 (602)
                      ....|..|.||||+|+..|+  +++++...+...+         ...|.||||+|+..|+.   +++++|+++|+++|.+
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~--~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~   87 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGG--VTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGK   87 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCC--HHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcccc
Confidence            34556889999999999998  4455544333221         26899999999999987   4688999999999999


Q ss_pred             C-CCCcCHHHHHHHcCcHHHHHHHHH-CCCCcccCCCCCCChhhHHHHHHHHhhhceeeeccC
Q 038432          475 D-RHGRTAIEIAMAENNVEMVNFLVM-NGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDD  535 (602)
Q Consensus       475 d-~~g~TpLh~A~~~~~~~iv~~Ll~-~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~  535 (602)
                      | ..|+||||+|+..++.+++++|++ .|++++.+|..|.||||+|+..++.++++.|+..++
T Consensus        88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga  150 (154)
T PHA02736         88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGA  150 (154)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            8 499999999999999999999998 599999999999999999999999998888876653

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.83  E-value=6e-21  Score=187.27  Aligned_cols=173  Identities=21%  Similarity=0.237  Sum_probs=145.0

Q ss_pred             CCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchh----------
Q 038432          325 EDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD----------  394 (602)
Q Consensus       325 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~----------  394 (602)
                      +..+.+|.|+||.+|...+.+++++|+++|+++|..|..|+||||.|+..|+..++++|+++|+++...+          
T Consensus        67 ~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~  146 (527)
T KOG0505|consen   67 NLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLA  146 (527)
T ss_pred             cccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccc
Confidence            5578899999999999999999999999999999999999999999999999999999999998876555          


Q ss_pred             -------hHH-HH--hccchh----------------------HHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC
Q 038432          395 -------YII-FM--YNLSYD----------------------IIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP  442 (602)
Q Consensus       395 -------~~~-~~--~~~~~~----------------------~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~  442 (602)
                             ... ..  .....+                      ..+..+..|.|.||.|+.+|..++.++|+++|.+++.
T Consensus       147 e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~  226 (527)
T KOG0505|consen  147 EDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNI  226 (527)
T ss_pred             cCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCccc
Confidence                   000 00  000010                      0112244599999999999999999999999999887


Q ss_pred             --CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHH
Q 038432          443 --YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLV  498 (602)
Q Consensus       443 --~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll  498 (602)
                        .+||||||.|+..|..+++++|+++|++++.....|.||+.+|...-- ..+.+..
T Consensus       227 ~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~dee~~-~l~eLe~  283 (527)
T KOG0505|consen  227 KDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADEEEL-YLLELEL  283 (527)
T ss_pred             ccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhhhhH-HHHHHHH
Confidence              899999999999999999999999999999999999999999976433 4444443

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.83  E-value=4.1e-21  Score=173.05  Aligned_cols=110  Identities=18%  Similarity=0.187  Sum_probs=105.4

Q ss_pred             ccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcC
Q 038432          412 MNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAEN  489 (602)
Q Consensus       412 ~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~  489 (602)
                      ..|.+|||+|++.|+..+++.|++.|+.+|.  ....||||+|+..|+.++++.|++..+|+|+.|..|+|||||||..|
T Consensus        32 dhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyacfwg  111 (448)
T KOG0195|consen   32 DHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWG  111 (448)
T ss_pred             ccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhc
Confidence            8999999999999999999999999999998  55679999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHCCCCcccCCCCCCChhhHHHHH
Q 038432          490 NVEMVNFLVMNGSDVVGANKCEFSSTNLNDML  521 (602)
Q Consensus       490 ~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~  521 (602)
                      ...+++-|+..||-+++.|++|.||++-|.-.
T Consensus       112 ydqiaedli~~ga~v~icnk~g~tpldkakp~  143 (448)
T KOG0195|consen  112 YDQIAEDLISCGAAVNICNKKGMTPLDKAKPM  143 (448)
T ss_pred             HHHHHHHHHhccceeeecccCCCCchhhhchH
Confidence            99999999999999999999999999987543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.82  E-value=4.8e-21  Score=199.68  Aligned_cols=209  Identities=19%  Similarity=0.198  Sum_probs=124.0

Q ss_pred             CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHH-------HH
Q 038432          327 GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYII-------FM  399 (602)
Q Consensus       327 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-------~~  399 (602)
                      ..++-.|+|..||+.|+.|.+++|+.+|+++..+|..|.+||.+|+-.||..+|+.|+.+.++++......       +-
T Consensus       753 Te~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlac  832 (2131)
T KOG4369|consen  753 TEPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLAC  832 (2131)
T ss_pred             cCccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEec
Confidence            34455677777777777777777777777777777777777777777777777777777766666554000       00


Q ss_pred             hccchhHHHH----------hhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC----CCcchhHHHHHhcCCHHHHHHHH
Q 038432          400 YNLSYDIIIL----------LDMNGNTALWEAISSKHHSIFRILYHCTAISDP----YTAGDLLCTAEKRNDMSVMEELV  465 (602)
Q Consensus       400 ~~~~~~~~~~----------~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~----~~g~t~L~~A~~~~~~~~~~~Ll  465 (602)
                      ..+..+++..          ++....|||.+|...|..+++++|+.+|+.+|.    +.|..||..|..+|+.+..+.|+
T Consensus       833 sggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll  912 (2131)
T KOG4369|consen  833 SGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLL  912 (2131)
T ss_pred             CCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHh
Confidence            0000000000          013344555555555555555555555555554    34455666666666666666666


Q ss_pred             HcCCCCCCC-CCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeeccC
Q 038432          466 KYGLNVDSK-DRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDD  535 (602)
Q Consensus       466 ~~ga~~n~~-d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~  535 (602)
                      +.|-|+|+. ..+-+|+|-+|+..|..++|.+||.+.+++..+-+.|.|||.-++.-|..++...|+..++
T Consensus       913 ~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~ga  983 (2131)
T KOG4369|consen  913 QPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGA  983 (2131)
T ss_pred             cccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhccc
Confidence            666665543 2344566666666666666666666666666666667777776666666666666666554

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.80  E-value=3.7e-19  Score=142.05  Aligned_cols=89  Identities=26%  Similarity=0.394  Sum_probs=83.9

Q ss_pred             HHHHHHcCChhHHHHHHhcCCCCCCCCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHH
Q 038432          418 LWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL  497 (602)
Q Consensus       418 Lh~A~~~~~~~~~~~Ll~~g~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~L  497 (602)
                      ||+|++.|+.+++++|++.+.+++.  |.||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+.+++++|
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L   78 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL--GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLL   78 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS--SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC--CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            7999999999999999999998887  89999999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCCcccCC
Q 038432          498 VMNGSDVVGAN  508 (602)
Q Consensus       498 l~~ga~~~~~d  508 (602)
                      +++|++++.+|
T Consensus        79 l~~g~~~~~~n   89 (89)
T PF12796_consen   79 LEHGADVNIRN   89 (89)
T ss_dssp             HHTTT-TTSS-
T ss_pred             HHcCCCCCCcC
Confidence            99999999876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.77  E-value=2.8e-19  Score=186.75  Aligned_cols=235  Identities=16%  Similarity=0.168  Sum_probs=180.8

Q ss_pred             hcccccccccccCCCC--CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCC--CCCCchHHHHHHhcCChHHHHHHHhc
Q 038432          311 KDLNIGDLIAESGEED--GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIG--DSKGRTPLHIAASKGHEECVLVLLKH  386 (602)
Q Consensus       311 ~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~--d~~g~t~Lh~A~~~g~~~~v~~Ll~~  386 (602)
                      +..+++.+|+..+++.  ++-.+.|||-.|...|.+++++.|+..|+.+|.+  ...|-+||++|..+||.+.++.|++.
T Consensus       835 gr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~  914 (2131)
T KOG4369|consen  835 GRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQP  914 (2131)
T ss_pred             CcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcc
Confidence            4445555566555543  4445567777777777777777777777777665  34567777777777777777777777


Q ss_pred             ccCCCchh-------hHHHHhccchhHH----------HHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC----CCc
Q 038432          387 ASNVHLRD-------YIIFMYNLSYDII----------ILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP----YTA  445 (602)
Q Consensus       387 g~~~~~~~-------~~~~~~~~~~~~~----------~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~----~~g  445 (602)
                      |.|+|..-       +-.+...+..+++          +.+-+.|.|||+-++..|.+|+-.+|+..|+|+|.    ...
T Consensus       915 gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~  994 (2131)
T KOG4369|consen  915 GSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTW  994 (2131)
T ss_pred             cchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcC
Confidence            76666542       0011122222222          22357799999999999999999999999999997    566


Q ss_pred             chhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHh
Q 038432          446 GDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKRE  525 (602)
Q Consensus       446 ~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~  525 (602)
                      .|+|-+++..|+...+..|+...|.++.+|++|.|+|..|+..|+...+.+|++++||++..|+...|++..|.++|+.+
T Consensus       995 dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~qdnr~~S~~maafRKgh~~ 1074 (2131)
T KOG4369|consen  995 DTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQQDNRTNSRTMAAFRKGHFA 1074 (2131)
T ss_pred             CccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhhcccChhhhhcccccccHHHHHhchhh
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhceeeeccCCCchhHHHhh
Q 038432          526 IGHRITVHDDNSTQNEVLLK  545 (602)
Q Consensus       526 ~~~~l~~~~~~~~~~~~~~~  545 (602)
                      |+++......-.+....+++
T Consensus      1075 iVk~mv~~atqfps~q~~ir 1094 (2131)
T KOG4369|consen 1075 IVKKMVPPATQFPSVQSTIR 1094 (2131)
T ss_pred             eeccccCchhcCCcHHHHHH
Confidence            99998766554444444433

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.75  E-value=2.4e-17  Score=141.01  Aligned_cols=122  Identities=34%  Similarity=0.550  Sum_probs=77.9

Q ss_pred             CCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCC
Q 038432          360 GDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAI  439 (602)
Q Consensus       360 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~  439 (602)
                      .|.+|.||||+|+..|+.+++++|++.|++.+..+                 ..|.||||+|+..++.+++++|++.|++
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~-----------------~~g~~~l~~a~~~~~~~~~~~ll~~~~~   65 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKD-----------------NDGRTPLHLAAKNGHLEIVKLLLEKGAD   65 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccC-----------------CCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            34556666666666666666666666666665554                 6666666666666666666666666644


Q ss_pred             CCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHH
Q 038432          440 SDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLV  498 (602)
Q Consensus       440 ~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll  498 (602)
                      ++.  ..|.||+|.|+..++.+++++|+++|.+++..|..|.||+++|...++.+++++|+
T Consensus        66 ~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          66 VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             ccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            433  44556666666666666666666666666666666667777766666666666653

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.74  E-value=1.1e-17  Score=133.47  Aligned_cols=87  Identities=34%  Similarity=0.443  Sum_probs=70.1

Q ss_pred             hhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccC
Q 038432          335 LLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNG  414 (602)
Q Consensus       335 L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g  414 (602)
                      ||.||+.|+.++++.|++.+.+++.    |+||||+|+..|+.+++++|+++|++++.+|                 ..|
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~-----------------~~g   59 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQD-----------------KNG   59 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BS-----------------TTS
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccC-----------------CCC
Confidence            6788888888888888888877766    7888888888888888888888888888877                 788


Q ss_pred             CcHHHHHHHcCChhHHHHHHhcCCCCCC
Q 038432          415 NTALWEAISSKHHSIFRILYHCTAISDP  442 (602)
Q Consensus       415 ~tpLh~A~~~~~~~~~~~Ll~~g~~~~~  442 (602)
                      +||||+|+..|+.+++++|+++|++++.
T Consensus        60 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~   87 (89)
T PF12796_consen   60 NTALHYAAENGNLEIVKLLLEHGADVNI   87 (89)
T ss_dssp             SBHHHHHHHTTHHHHHHHHHHTTT-TTS
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            8888888888888888888777777664

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.72  E-value=3.5e-17  Score=121.78  Aligned_cols=104  Identities=18%  Similarity=0.180  Sum_probs=98.1

Q ss_pred             cHHHHHHHcCChhHHHHHHhcCCCCCC-CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHH
Q 038432          416 TALWEAISSKHHSIFRILYHCTAISDP-YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMV  494 (602)
Q Consensus       416 tpLh~A~~~~~~~~~~~Ll~~g~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv  494 (602)
                      --..+++++|..+-|+-.+..|-++|. ..|++|||+|+..|+.+++++|+..||+++.+|+.|-|||-.|+..||.++|
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIYGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHhCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence            346789999999999999999999988 8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCcccCCCCCCChhhHHH
Q 038432          495 NFLVMNGSDVVGANKCEFSSTNLND  519 (602)
Q Consensus       495 ~~Ll~~ga~~~~~d~~g~t~l~~a~  519 (602)
                      ++|+++|||-..+.-+|.+.+..+.
T Consensus        84 klLL~~GAdrt~~~PdG~~~~eate  108 (117)
T KOG4214|consen   84 KLLLQNGADRTIHAPDGTALIEATE  108 (117)
T ss_pred             HHHHHcCcccceeCCCchhHHhhcc
Confidence            9999999999999999998888764

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.71  E-value=7.5e-17  Score=137.90  Aligned_cols=120  Identities=23%  Similarity=0.355  Sum_probs=111.7

Q ss_pred             hccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHc
Q 038432          411 DMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAE  488 (602)
Q Consensus       411 ~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~  488 (602)
                      |..|.||||+|+..|+.+++++|++.|++.+.  ..|.||+|.|+..++.+++++|+++|++++..+..|.||+|+|+..
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~   83 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARN   83 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            47899999999999999999999999998544  8899999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhcee
Q 038432          489 NNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRI  530 (602)
Q Consensus       489 ~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l  530 (602)
                      ++.+++++|+++|.+++..|..|.||+++|...++.++++.|
T Consensus        84 ~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          84 GNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             CcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            999999999999999999999999999999988777666554

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.70  E-value=6.5e-17  Score=166.92  Aligned_cols=175  Identities=18%  Similarity=0.161  Sum_probs=144.8

Q ss_pred             CCCCCCchhhhHhhh---cCcHHHHHHHHhcCCC-CCC----CCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHH
Q 038432          326 DGDPNMSVNLLTVAS---TGNAAFLDELLKARLD-PDI----GDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYII  397 (602)
Q Consensus       326 ~~~~~g~t~L~~A~~---~g~~~~~~~Ll~~g~~-~n~----~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~  397 (602)
                      .+..-|.|.||.|.-   .++-++++.|++.-.. +|.    ..-.|.||||.|+.+.+.++|++|++.|||++++-+-.
T Consensus       138 ~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~  217 (782)
T KOG3676|consen  138 ERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGA  217 (782)
T ss_pred             cccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhcc
Confidence            346678999999987   4455899999985322 222    13469999999999999999999999999999886433


Q ss_pred             HHhccchhHHH-Hh-----hccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCC
Q 038432          398 FMYNLSYDIII-LL-----DMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGL  469 (602)
Q Consensus       398 ~~~~~~~~~~~-~~-----~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga  469 (602)
                      +....+....+ ..     =..|..||-+|+..++.+++++|+++|||++.  ..|+|.||..+..-..++..+++++|+
T Consensus       218 FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga  297 (782)
T KOG3676|consen  218 FFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGA  297 (782)
T ss_pred             ccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence            33332221110 00     13578999999999999999999999999998  899999999999999999999999999


Q ss_pred             C--CCCCCCCCcCHHHHHHHcCcHHHHHHHHHC
Q 038432          470 N--VDSKDRHGRTAIEIAMAENNVEMVNFLVMN  500 (602)
Q Consensus       470 ~--~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~  500 (602)
                      +  ...+|..|-|||.+||..|+.++.+.+++.
T Consensus       298 ~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  298 NALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             CccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9  889999999999999999999999999987

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.64  E-value=5.2e-16  Score=115.56  Aligned_cols=99  Identities=22%  Similarity=0.256  Sum_probs=85.7

Q ss_pred             hhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhc
Q 038432          333 VNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDM  412 (602)
Q Consensus       333 t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~  412 (602)
                      ..+.+++.+|.++-++.....|.++|..- .|++|||+|+-.|+.+++++|+..||+++.+|                 +
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kD-----------------K   65 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKD-----------------K   65 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCcc-----------------c
Confidence            45778899999999999999998888765 89999999999999999999999999999998                 9


Q ss_pred             cCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhH
Q 038432          413 NGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLL  449 (602)
Q Consensus       413 ~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L  449 (602)
                      .|-|||..|+..||.++|++|++.|++-..  .+|.+.+
T Consensus        66 ygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~  104 (117)
T KOG4214|consen   66 YGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALI  104 (117)
T ss_pred             cCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHH
Confidence            999999999999999999999988887655  5554443

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.60  E-value=6.3e-15  Score=140.53  Aligned_cols=129  Identities=29%  Similarity=0.404  Sum_probs=116.9

Q ss_pred             CCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCC-----hhHH
Q 038432          356 DPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKH-----HSIF  430 (602)
Q Consensus       356 ~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~-----~~~~  430 (602)
                      ..+..+..+.+++|.|+..+..+++++++..|++++..+                 ..|.||||+|+..++     .+++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----------------~~g~t~l~~a~~~~~~~~~~~~~~  127 (235)
T COG0666          65 HLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKD-----------------ADGDTPLHLAALNGNPPEGNIEVA  127 (235)
T ss_pred             ccccCCccccCHHHHHHHcCcHHHHHHHHHcCCCccccc-----------------CCCCcHHHHHHhcCCcccchHHHH
Confidence            345567788999999999999999999999999999888                 999999999999999     9999


Q ss_pred             HHHHhcCC--CCCC---CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCC
Q 038432          431 RILYHCTA--ISDP---YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNG  501 (602)
Q Consensus       431 ~~Ll~~g~--~~~~---~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~g  501 (602)
                      +.|++.|+  +...   ..|.||||+|+..|+.+++++|++.|++++.++..|.||++.|+..++.++++.+++.+
T Consensus       128 ~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         128 KLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             HHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999  3433   78999999999999999999999999999999999999999999999999999999966

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.57  E-value=1.7e-15  Score=107.95  Aligned_cols=55  Identities=25%  Similarity=0.390  Sum_probs=33.5

Q ss_pred             HHHcC-CCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHH
Q 038432          464 LVKYG-LNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLN  518 (602)
Q Consensus       464 Ll~~g-a~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a  518 (602)
                      |+++| +++|.+|..|+||||+||..|+.+++++|++.|+|++.+|.+|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            57788 99999999999999999999999999999999999999999999999997

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.55  E-value=2.7e-14  Score=136.12  Aligned_cols=125  Identities=29%  Similarity=0.359  Sum_probs=117.0

Q ss_pred             CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCC-----hHHHHHHHhccc---CCCchhhHHH
Q 038432          327 GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGH-----EECVLVLLKHAS---NVHLRDYIIF  398 (602)
Q Consensus       327 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~-----~~~v~~Ll~~g~---~~~~~~~~~~  398 (602)
                      .+..+.+++|.++..++.+.+++++..|++++.+|..|.||||+|+..|+     .+++++|++.|+   +.+..|    
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~----  144 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRD----  144 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccC----
Confidence            44557899999999999999999999999999999999999999999999     999999999999   555556    


Q ss_pred             HhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcC
Q 038432          399 MYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYG  468 (602)
Q Consensus       399 ~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~g  468 (602)
                                   ..|.||||+|+..|+.+++++|++.|++++.  ..|.|+++.|+..++.++++.+++.+
T Consensus       145 -------------~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         145 -------------EDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             -------------CCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence                         9999999999999999999999999999888  89999999999999999999999976

>PRK09392 ftrB transcriptional activator FtrB; Provisional

Probab=99.54  E-value=1.9e-13  Score=130.82  Aligned_cols=130  Identities=19%  Similarity=0.257  Sum_probs=120.1

Q ss_pred             HhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehhh
Q 038432          179 LHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVG  258 (602)
Q Consensus       179 ~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~~  258 (602)
                      .++++.+++|..++++.+..+....+.+.|++|++|+++|+.++.+|+|.+|.|+++...++++..+..+.+|++||+.+
T Consensus         6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~   85 (236)
T PRK09392          6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAA   85 (236)
T ss_pred             HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHH
Confidence            35788999999999999999999999999999999999999999999999999999977677788899999999999999


Q ss_pred             hhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhh
Q 038432          259 ALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHK  308 (602)
Q Consensus       259 ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~  308 (602)
                      ++.+.+...++.|.++|.++.++.+.|.+++.++|.....+.+.+..+..
T Consensus        86 ~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~~~  135 (236)
T PRK09392         86 VVLDAPYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGCYR  135 (236)
T ss_pred             HhCCCCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988887776655433

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.51  E-value=7.6e-14  Score=151.93  Aligned_cols=104  Identities=20%  Similarity=0.221  Sum_probs=98.9

Q ss_pred             cHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHH
Q 038432          416 TALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEM  493 (602)
Q Consensus       416 tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~i  493 (602)
                      ++|+.|+..|+.+++++|+++|+++|.  ..|.||||+|+..|+.+++++|+++|+|+|.+|.+|.||||+|+..|+.++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            569999999999999999999999987  789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHC-------CCCcccCCCCCCChhhHHH
Q 038432          494 VNFLVMN-------GSDVVGANKCEFSSTNLND  519 (602)
Q Consensus       494 v~~Ll~~-------ga~~~~~d~~g~t~l~~a~  519 (602)
                      +++|+++       |++++..+..|.+|+..+.
T Consensus       164 v~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        164 VQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            9999999       9999999999998877654

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=4.6e-14  Score=137.80  Aligned_cols=117  Identities=24%  Similarity=0.240  Sum_probs=95.6

Q ss_pred             hhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhc
Q 038432          333 VNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDM  412 (602)
Q Consensus       333 t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~  412 (602)
                      -.|..|+..|.+|+|+..+..--|+...+..|-|+||-|+..||.+||++|++.|+|+|..|                 .
T Consensus       552 aLLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~D-----------------S  614 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAAD-----------------S  614 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCcc-----------------C
Confidence            34566788888999988888777888888899999999999999999999999999999888                 8


Q ss_pred             cCCcHHHHHHHcCChhHHHHHHhcCCCCCC---CCcchhHHHHH--hcCCHHHHHHHHH
Q 038432          413 NGNTALWEAISSKHHSIFRILYHCTAISDP---YTAGDLLCTAE--KRNDMSVMEELVK  466 (602)
Q Consensus       413 ~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~---~~g~t~L~~A~--~~~~~~~~~~Ll~  466 (602)
                      +||||||+|+.+++..+++.|++.|+-+-.   .++.|+..-+-  ..|..+|.+||..
T Consensus       615 dGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  615 DGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             CCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            899999999999999999999988887655   66777765543  4567778887763

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.48  E-value=1.7e-13  Score=124.24  Aligned_cols=118  Identities=19%  Similarity=0.102  Sum_probs=109.0

Q ss_pred             chhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhh
Q 038432          332 SVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLD  411 (602)
Q Consensus       332 ~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~  411 (602)
                      ..||..++..|+.+....|++.--++|.+|..|.|||..|+..|+.+.|++|++.|+|+|...                +
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~q----------------h   76 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQ----------------H   76 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCccc----------------c
Confidence            678999999999999999999877799999999999999999999999999999999999876                5


Q ss_pred             ccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHH
Q 038432          412 MNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELV  465 (602)
Q Consensus       412 ~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll  465 (602)
                      ..+.||||+|+.+|+.++.++|++.|+....  .-|+|+-..|+.-|+.++|..+-
T Consensus        77 g~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   77 GTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             cccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHh
Confidence            7789999999999999999999999998776  77999999999999988887664

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.47  E-value=1e-13  Score=98.41  Aligned_cols=54  Identities=24%  Similarity=0.520  Sum_probs=43.3

Q ss_pred             cchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHH
Q 038432          445 AGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLV  498 (602)
Q Consensus       445 g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll  498 (602)
                      |.||||.|+..|+.+++++|+++|+|+|.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            678888888888899999999999999999999999999999999999999986

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.47  E-value=4.4e-14  Score=100.63  Aligned_cols=55  Identities=40%  Similarity=0.566  Sum_probs=33.3

Q ss_pred             HHhcC-CCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHH
Q 038432          350 LLKAR-LDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEA  421 (602)
Q Consensus       350 Ll~~g-~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A  421 (602)
                      |++.| +++|.+|..|.||||+||..|+.++|++|++.|+|++.+|                 ..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d-----------------~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKD-----------------KDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT--------------------TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCc-----------------CCCCCHHHhC
Confidence            56777 8999999999999999999999999999999999999998                 9999999997

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.45  E-value=3.1e-13  Score=147.21  Aligned_cols=104  Identities=22%  Similarity=0.213  Sum_probs=97.4

Q ss_pred             hHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--C
Q 038432          366 TPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--Y  443 (602)
Q Consensus       366 t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~  443 (602)
                      ++|+.|+..|+.++++.|+++|+++|..|                 ..|.||||+|+..|+.+++++|+++|++++.  .
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d-----------------~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~  146 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRD-----------------YDGRTPLHIACANGHVQVVRVLLEFGADPTLLDK  146 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcC-----------------CCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
Confidence            35889999999999999999999999998                 9999999999999999999999999999987  7


Q ss_pred             CcchhHHHHHhcCCHHHHHHHHHc-------CCCCCCCCCCCcCHHHHHH
Q 038432          444 TAGDLLCTAEKRNDMSVMEELVKY-------GLNVDSKDRHGRTAIEIAM  486 (602)
Q Consensus       444 ~g~t~L~~A~~~~~~~~~~~Ll~~-------ga~~n~~d~~g~TpLh~A~  486 (602)
                      .|.||||+|+..|+.+++++|+++       |++++..+..|.+|+..+.
T Consensus       147 ~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        147 DGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            899999999999999999999999       8999999998888877665

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.44  E-value=2e-13  Score=96.86  Aligned_cols=54  Identities=39%  Similarity=0.596  Sum_probs=46.5

Q ss_pred             CchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHH
Q 038432          364 GRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILY  434 (602)
Q Consensus       364 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll  434 (602)
                      |+||||+||..|+.+++++|+++|+|+|..|                 .+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d-----------------~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQD-----------------EDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B------------------TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCC-----------------CCCCCHHHHHHHccCHHHHHHHC
Confidence            7899999999999999999999999999998                 99999999999999999999986

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.42  E-value=8.7e-13  Score=119.65  Aligned_cols=117  Identities=25%  Similarity=0.235  Sum_probs=89.4

Q ss_pred             CchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC-
Q 038432          364 GRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP-  442 (602)
Q Consensus       364 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~-  442 (602)
                      -..||.-++-.|..+-...|++.--++|..|                 ..|.|||..|+..|+.+++++|++.|+|+|. 
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D-----------------~sGMs~LahAaykGnl~~v~lll~~gaDvN~~   74 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVNQRD-----------------PSGMSVLAHAAYKGNLTLVELLLELGADVNDK   74 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhhccC-----------------CCcccHHHHHHhcCcHHHHHHHHHhCCCcCcc
Confidence            3568888888888888888887766677776                 8888888888888888888888888888876 


Q ss_pred             --CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHH
Q 038432          443 --YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL  497 (602)
Q Consensus       443 --~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~L  497 (602)
                        ..+.||||.|+..|+.++..+|++.|+.....|+-|+|+-.+|+.-|+-++|..+
T Consensus        75 qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen   75 QHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             cccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHH
Confidence              4556777777777777777777777777777777777777777777776666554

>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

Probab=99.38  E-value=8.1e-12  Score=104.62  Aligned_cols=112  Identities=32%  Similarity=0.445  Sum_probs=102.6

Q ss_pred             ccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEecc-CceeEEEEeCCCCeeehhhhhcCCCc
Q 038432          187 LFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEM-EKEIAVGTLQTGDMFGEVGALCCRPQ  265 (602)
Q Consensus       187 ~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~-~~~~~~~~l~~g~~fGe~~ll~~~~~  265 (602)
                      +|..++++.+..+...++.+.+.+|++|+.+|+..+.+|+|.+|.+.+..... +++..+..+.+|++||...++.+.+.
T Consensus         1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~   80 (115)
T cd00038           1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNGPR   80 (115)
T ss_pred             CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcCCCC
Confidence            47889999999999999999999999999999999999999999999987544 36788899999999999999988889


Q ss_pred             eeEEEEcceeEEEEeeHHHHHHHHHhChHHHHH
Q 038432          266 IYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVS  298 (602)
Q Consensus       266 ~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~  298 (602)
                      ..++.+.+.+.++.++.+.+.+++.++|.....
T Consensus        81 ~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~  113 (115)
T cd00038          81 SATVRALTDSELLVLPRSDFRRLLQEYPELARR  113 (115)
T ss_pred             CceEEEcCceEEEEEeHHHHHHHHHHCcHhHHh
Confidence            999999999999999999999999999976543

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.38  E-value=9e-13  Score=128.89  Aligned_cols=101  Identities=20%  Similarity=0.204  Sum_probs=90.3

Q ss_pred             HHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHH
Q 038432          418 LWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVN  495 (602)
Q Consensus       418 Lh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~  495 (602)
                      |.-|+..|..++|+-.+..-.|+..  ..|.|+||-|+..|+.+||++|++.|+|+|+.|++||||||+|+..++..+++
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHH
Confidence            3557788999999999988888776  78999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCCcccCC-CCCCChhhHH
Q 038432          496 FLVMNGSDVVGAN-KCEFSSTNLN  518 (602)
Q Consensus       496 ~Ll~~ga~~~~~d-~~g~t~l~~a  518 (602)
                      .|++.||-+.+.. .++.||.+-+
T Consensus       634 qLVe~GaavfAsTlSDmeTa~eKC  657 (752)
T KOG0515|consen  634 QLVESGAAVFASTLSDMETAAEKC  657 (752)
T ss_pred             HHHhccceEEeeecccccchhhhc
Confidence            9999999886654 4677887654

>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional

Probab=99.36  E-value=2.5e-11  Score=114.04  Aligned_cols=119  Identities=18%  Similarity=0.288  Sum_probs=107.0

Q ss_pred             ccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehhhhhcCC-Cce
Q 038432          189 KDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEVGALCCR-PQI  266 (602)
Q Consensus       189 ~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~~ll~~~-~~~  266 (602)
                      +.+|++.+..+...++.+.|++|++|+.+|++++.+|+|.+|.++++... ++++..+..+.+|++||+.+++.+. +.+
T Consensus         6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~   85 (211)
T PRK11753          6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS   85 (211)
T ss_pred             CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCce
Confidence            35799999999999999999999999999999999999999999998654 4678889999999999999988864 677


Q ss_pred             eEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhh
Q 038432          267 YTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQH  307 (602)
Q Consensus       267 ~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~  307 (602)
                      .+++|.++|.++.++.+.|.+++..+|+....+.+.+..+.
T Consensus        86 ~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l  126 (211)
T PRK11753         86 AWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMARRL  126 (211)
T ss_pred             EEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999887777665554

>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]

Probab=99.36  E-value=1.6e-12  Score=122.24  Aligned_cols=130  Identities=22%  Similarity=0.321  Sum_probs=116.5

Q ss_pred             hHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehh
Q 038432          178 FLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEV  257 (602)
Q Consensus       178 ~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~  257 (602)
                      ....+++.-+|++++++.++.+...+....+..|+.|+.||+.++.+|+|.+|+++|+..    ...+..+.+|..|||.
T Consensus       120 L~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~----~~~v~~~~~g~sFGEl  195 (368)
T KOG1113|consen  120 LEEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVN----GTYVTTYSPGGSFGEL  195 (368)
T ss_pred             HHHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEEC----CeEEeeeCCCCchhhh
Confidence            345677888999999999999999999999999999999999999999999999999975    3478899999999999


Q ss_pred             hhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhhhh
Q 038432          258 GALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLK  311 (602)
Q Consensus       258 ~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~~~  311 (602)
                      +++.+.|+.+|+.+.+.+.+|.+++..|.+++..+.....+++..+++....+.
T Consensus       196 ALmyn~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~~l~s~pil~  249 (368)
T KOG1113|consen  196 ALMYNPPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEPFLESVPILE  249 (368)
T ss_pred             HhhhCCCcccceeeccccceEEEeeceeEEEeeccchhhhhhhhhhhhcchhhH
Confidence            999999999999999999999999999999988888777777777666544444

>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain

Probab=99.31  E-value=5.1e-11  Score=100.46  Aligned_cols=115  Identities=30%  Similarity=0.427  Sum_probs=101.8

Q ss_pred             ccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehhhhh--cCC
Q 038432          187 LFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEVGAL--CCR  263 (602)
Q Consensus       187 ~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~~ll--~~~  263 (602)
                      +|.++++..+..++..++.+.|.+|++|+++|++.+.+|+|.+|.++++..+ ++++..+..+.+|++||+.+++  ...
T Consensus         1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~   80 (120)
T smart00100        1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLTNSRR   80 (120)
T ss_pred             CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhccCCCc
Confidence            4788999999999999999999999999999999999999999999999753 4467789999999999999988  345


Q ss_pred             CceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHH
Q 038432          264 PQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILK  301 (602)
Q Consensus       264 ~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~  301 (602)
                      +...++.+.+.+.++.++...+...+..++......+.
T Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  118 (120)
T smart00100       81 AASATAVALELATLLRIDFRDFLQLLQENPQLLLELLL  118 (120)
T ss_pred             ccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHHHh
Confidence            67788999999999999999999999998887655443

Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.31  E-value=6e-11  Score=118.65  Aligned_cols=127  Identities=17%  Similarity=0.199  Sum_probs=117.2

Q ss_pred             HhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehhh
Q 038432          179 LHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVG  258 (602)
Q Consensus       179 ~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~~  258 (602)
                      .++++++|.|+.++++.+..|...++..+|++||+|+..|.+...+|+|.+|.|+++..++   .++..+..||.||..+
T Consensus         6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g---~v~~~~~~gdlFg~~~   82 (610)
T COG2905           6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGG---EVLDRLAAGDLFGFSS   82 (610)
T ss_pred             HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCC---eeeeeeccCccccchh
Confidence            4789999999999999999999999999999999999999999999999999999997666   4899999999999999


Q ss_pred             hhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhh
Q 038432          259 ALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHK  308 (602)
Q Consensus       259 ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~  308 (602)
                      +++..+....+.+.+++-++.|+++.|.+++.++|.....+...+..+.+
T Consensus        83 l~~~~~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~~~~akR~~  132 (610)
T COG2905          83 LFTELNKQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFLRSLAKRLR  132 (610)
T ss_pred             hcccCCCcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            99999888889999999999999999999999999998887766655544

>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]

Probab=99.31  E-value=2.1e-11  Score=97.57  Aligned_cols=89  Identities=29%  Similarity=0.440  Sum_probs=82.9

Q ss_pred             eecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCc-eeEEEEeCCCCeeehhhhhcCCCceeEEEEcceeEEEEeeHHH
Q 038432          206 EYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEK-EIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSA  284 (602)
Q Consensus       206 ~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~-~~~~~~l~~g~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~  284 (602)
                      +.|++|++|+++|+..+.+|||.+|.++++....+. ...+..+.+|++||+.+++.+.++..+++|.+.+.++.++++.
T Consensus         2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~~   81 (91)
T PF00027_consen    2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLRIPRED   81 (91)
T ss_dssp             EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEEEEEHHH
T ss_pred             eEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccEEEEEEccCEEEEEEeHHH
Confidence            679999999999999999999999999999876654 4568999999999999999999999999999999999999999


Q ss_pred             HHHHHHhChH
Q 038432          285 LIEAMQSKQE  294 (602)
Q Consensus       285 ~~~~l~~~~~  294 (602)
                      |.++++++|+
T Consensus        82 ~~~~~~~~p~   91 (91)
T PF00027_consen   82 FLQLLQQDPE   91 (91)
T ss_dssp             HHHHHHHSHH
T ss_pred             HHHHHHhCcC
Confidence            9999999985

The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.27  E-value=7.5e-12  Score=123.15  Aligned_cols=121  Identities=21%  Similarity=0.348  Sum_probs=108.5

Q ss_pred             HHhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccC--ceeEEEEeCCCC
Q 038432          175 QHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEME--KEIAVGTLQTGD  252 (602)
Q Consensus       175 ~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~--~~~~~~~l~~g~  252 (602)
                      .+-++++|+.+|+|+++|++.+.+++..++..+|..|++|+++|+.++.+|+|.+|+|.+.....+  .+..++.++.||
T Consensus       267 ~~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd  346 (732)
T KOG0614|consen  267 HEQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGD  346 (732)
T ss_pred             HHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccc
Confidence            456778999999999999999999999999999999999999999999999999999999876544  567789999999


Q ss_pred             eeehhhhhcCCCceeEEEEcce-eEEEEeeHHHHHHHHHhChHH
Q 038432          253 MFGEVGALCCRPQIYTYRTKTL-SQLLRLKTSALIEAMQSKQED  295 (602)
Q Consensus       253 ~fGe~~ll~~~~~~~tv~a~~~-~~l~~l~~~~~~~~l~~~~~~  295 (602)
                      +|||.+++....|++.+.+... .+++.++++.|.+++-...+.
T Consensus       347 ~FGE~al~~edvRtAniia~~~gv~cl~lDresF~~liG~l~~l  390 (732)
T KOG0614|consen  347 YFGERALLGEDVRTANIIAQAPGVECLTLDRESFKKLIGDLEEL  390 (732)
T ss_pred             hhhHHHhhccCccchhhhccCCCceEEEecHHHHHHhcccHHHh
Confidence            9999999999999999998887 899999999998876544433

>PRK10402 DNA-binding transcriptional activator YeiL; Provisional

Probab=99.27  E-value=4.9e-11  Score=112.99  Aligned_cols=111  Identities=10%  Similarity=0.043  Sum_probs=99.9

Q ss_pred             HHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehhhhhcCCCceeEEEEcce
Q 038432          196 IVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTL  274 (602)
Q Consensus       196 l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~~ll~~~~~~~tv~a~~~  274 (602)
                      ...+....+.+.|++|++|+.+||+++.+|+|.+|.|+++..+ +|++.++..+.+|++||+.+++.+.+.+.++.|.++
T Consensus        24 ~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~~  103 (226)
T PRK10402         24 SFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQAIEE  103 (226)
T ss_pred             CHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEEecc
Confidence            3467788889999999999999999999999999999998654 557888999999999999999999999999999999


Q ss_pred             eEEEEeeHHHHHHHHHhChHHHHHHHHHHHHh
Q 038432          275 SQLLRLKTSALIEAMQSKQEDNVSILKNFLQQ  306 (602)
Q Consensus       275 ~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~  306 (602)
                      +.++.++.+.|.+++..+|.....+++.+..+
T Consensus       104 ~~i~~i~~~~~~~ll~~~p~~~~~~~~~l~~~  135 (226)
T PRK10402        104 CWCLALPMKDCRPLLLNDALFLRKLCKFLSHK  135 (226)
T ss_pred             EEEEEEEHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            99999999999999999999888777766554

>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []

Probab=99.24  E-value=7.4e-11  Score=91.00  Aligned_cols=77  Identities=31%  Similarity=0.613  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCCchHHHHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHH
Q 038432           15 DIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFN   94 (602)
Q Consensus        15 ~l~~~H~~aC~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g   94 (602)
                      ++++.++.||+++.+.+.    ..               ...|.+|+||+++|+||+||||+.|.+..+++++++.+++|
T Consensus         2 ~~~~~l~~~~~~~~~~~~----~~---------------~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G   62 (79)
T PF07885_consen    2 ILLLVLAFGAIFFYISEG----SE---------------KWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIG   62 (79)
T ss_dssp             HHHHHHHHHHHHHHHTTS----SS---------------TTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHH
T ss_pred             EEEeeeHHHHHHHHHHHh----cc---------------cCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHH
Confidence            467788889999887110    01               12588999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 038432           95 LGLTAYLIGNMTNLVV  110 (602)
Q Consensus        95 ~~~~~~~i~~i~~~~~  110 (602)
                      ..++++.++.+.+.+.
T Consensus        63 ~~~~~~~~~~~~~~l~   78 (79)
T PF07885_consen   63 IFLFALFLSVLASVLT   78 (79)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999988764

; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.23  E-value=1.7e-11  Score=120.69  Aligned_cols=137  Identities=19%  Similarity=0.247  Sum_probs=119.9

Q ss_pred             HHHHhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCC
Q 038432          173 ICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGD  252 (602)
Q Consensus       173 v~~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~  252 (602)
                      -...+.++-+.+..|++++....+.+|+.+|.+..|++|+.|+++|++++.+|++.+|+++|...    +..+..+++|.
T Consensus       147 ~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~----g~ll~~m~~gt  222 (732)
T KOG0614|consen  147 GAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSRE----GKLLGKMGAGT  222 (732)
T ss_pred             cHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEeeC----CeeeeccCCch
Confidence            34566778888899999999999999999999999999999999999999999999999999873    36899999999


Q ss_pred             eeehhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhhhhcc
Q 038432          253 MFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKDL  313 (602)
Q Consensus       253 ~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~~~~~  313 (602)
                      .|||.+++.+.+|++++++.+.+.+|.|+++.|+.++.........-..+++.....+.++
T Consensus       223 vFGELAILynctRtAsV~alt~~~lWaidR~vFq~IM~~tg~~r~~~~~~fLrsv~~~q~l  283 (732)
T KOG0614|consen  223 VFGELAILYNCTRTASVRALTDVRLWAIDREVFQAIMMRTGLERHEQYMNFLRSVPLFQNL  283 (732)
T ss_pred             hhhHHHHHhCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence            9999999999999999999999999999999999998877666665556665555444433

>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]

Probab=99.23  E-value=2.4e-10  Score=107.66  Aligned_cols=127  Identities=24%  Similarity=0.402  Sum_probs=109.4

Q ss_pred             hhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEecc-CceeEEEEeCCCCeeehhhhhc
Q 038432          183 EKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEM-EKEIAVGTLQTGDMFGEVGALC  261 (602)
Q Consensus       183 ~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~-~~~~~~~~l~~g~~fGe~~ll~  261 (602)
                      ...+.|...+......+......+.+++|++|+.+||+++.+|+|.+|.++++.... +++..+..+++|++||+.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~   82 (214)
T COG0664           3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLG   82 (214)
T ss_pred             ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhc
Confidence            345666667888888887888999999999999999999999999999999997554 5788899999999999999999


Q ss_pred             CCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432          262 CRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK  309 (602)
Q Consensus       262 ~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~  309 (602)
                      +.+++.++++.+++.++.+++..|.+++...|.....++..+..+...
T Consensus        83 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~l~~  130 (214)
T COG0664          83 GDPRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARRLRQ  130 (214)
T ss_pred             CCCccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999998777777777776665555443

>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional

Probab=99.21  E-value=3.5e-10  Score=108.10  Aligned_cols=126  Identities=12%  Similarity=0.092  Sum_probs=106.7

Q ss_pred             hhhhcccccCCHHHHHHHHHhccc-eecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehhhh
Q 038432          182 VEKVYLFKDVSKEIIVLLVAKMKA-EYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEVGA  259 (602)
Q Consensus       182 l~~~~~f~~~s~~~l~~l~~~~~~-~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~~l  259 (602)
                      +++.+.|..++++.+..|...... ..|++|++|+.+||+++.+|+|.+|.|+++..+ ++++.++..+.+|++||+.++
T Consensus        15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~   94 (235)
T PRK11161         15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAI   94 (235)
T ss_pred             ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccc
Confidence            445555557999999999988864 679999999999999999999999999999754 457888889999999998776


Q ss_pred             hcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhh
Q 038432          260 LCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHK  308 (602)
Q Consensus       260 l~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~  308 (602)
                      +. .+.+.++.+.+++.++.++.+.|.+++..+|+....+++.+..+..
T Consensus        95 ~~-~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~~~~  142 (235)
T PRK11161         95 GS-GQHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSGEIK  142 (235)
T ss_pred             cC-CCCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHHHHH
Confidence            54 4455688999999999999999999999999998888777655443

>PLN02868 acyl-CoA thioesterase family protein

Probab=99.20  E-value=1.7e-10  Score=119.12  Aligned_cols=113  Identities=17%  Similarity=0.092  Sum_probs=101.6

Q ss_pred             HhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehhh
Q 038432          179 LHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVG  258 (602)
Q Consensus       179 ~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~~  258 (602)
                      .++++++++|++++++.+..+...++.+.|++|++|+++||..+.+|+|.+|.|+++....+.+..+..+++|++||+. 
T Consensus         7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~~-   85 (413)
T PLN02868          7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGYG-   85 (413)
T ss_pred             HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeehh-
Confidence            3567899999999999999999999999999999999999999999999999999998665556788899999999975 


Q ss_pred             hhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhCh
Q 038432          259 ALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQ  293 (602)
Q Consensus       259 ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~  293 (602)
                       +.+.++..++++.+.++++.++.+.|..+....+
T Consensus        86 -l~~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~  119 (413)
T PLN02868         86 -LSGSVHSADVVAVSELTCLVLPHEHCHLLSPKSI  119 (413)
T ss_pred             -hCCCCcccEEEECCCEEEEEEcHHHHhhhccccc
Confidence             6788899999999999999999999987655443

>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]

Probab=99.16  E-value=2.9e-11  Score=119.46  Aligned_cols=78  Identities=19%  Similarity=0.273  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHhhhHHHHHhhhh
Q 038432           54 WIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVG  131 (602)
Q Consensus        54 ~~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~  131 (602)
                      +++-..++|||++|||||||||++|.|..+++++...++.|++..|+.|..|.+-+...++..++.++..+.-...+.
T Consensus       375 FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~~~~~~~~~~~~  452 (477)
T KOG3713|consen  375 FTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKAREKAPKRREALEP  452 (477)
T ss_pred             CccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHHHhhhhhccccc
Confidence            444557999999999999999999999999999999999999999999999998888877766666655544444433

>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial

Probab=99.01  E-value=4.1e-09  Score=97.46  Aligned_cols=99  Identities=16%  Similarity=0.300  Sum_probs=87.1

Q ss_pred             CCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehhhhhcCCCc--eeEEEEcceeEEEEeeHHHHHH
Q 038432          211 REDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEVGALCCRPQ--IYTYRTKTLSQLLRLKTSALIE  287 (602)
Q Consensus       211 g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~~ll~~~~~--~~tv~a~~~~~l~~l~~~~~~~  287 (602)
                      |++|+.+||+.+.+|+|.+|.|+++... ++++..+..+.+|++||+.+++.+.+.  ..++.|.+++.++.++.+.|.+
T Consensus         1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~   80 (193)
T TIGR03697         1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHRSDRFYHAVAFTRVELLAVPIEQVEK   80 (193)
T ss_pred             CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCCCccceEEEEecceEEEEeeHHHHHH
Confidence            7899999999999999999999999754 457888999999999999999987653  4789999999999999999999


Q ss_pred             HHHhChHHHHHHHHHHHHhhhh
Q 038432          288 AMQSKQEDNVSILKNFLQQHKK  309 (602)
Q Consensus       288 ~l~~~~~~~~~il~~ll~~~~~  309 (602)
                      ++..+|.....+++.+..+...
T Consensus        81 l~~~~p~l~~~~~~~l~~~l~~  102 (193)
T TIGR03697        81 AIEEDPDLSMLLLQGLSSRILQ  102 (193)
T ss_pred             HHHHChHHHHHHHHHHHHHHHH
Confidence            9999999998888876655433

Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.

>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]

Probab=98.99  E-value=8.4e-10  Score=109.50  Aligned_cols=61  Identities=21%  Similarity=0.441  Sum_probs=56.2

Q ss_pred             CCchHHHHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038432           50 ETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVV  110 (602)
Q Consensus        50 ~~~~~~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~  110 (602)
                      ....+..|.+|+||+++|+||+||||.+|+|...++++..+.++|+.+||..-|.+++-+.
T Consensus       263 ~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfA  323 (654)
T KOG1419|consen  263 TNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFA  323 (654)
T ss_pred             ccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhh
Confidence            3456889999999999999999999999999999999999999999999999998877554

>PRK09391 fixK transcriptional regulator FixK; Provisional

Probab=98.97  E-value=9.4e-09  Score=97.56  Aligned_cols=109  Identities=16%  Similarity=0.093  Sum_probs=93.7

Q ss_pred             HHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehhhhhcCCCceeEEEEcceeE
Q 038432          198 LLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQ  276 (602)
Q Consensus       198 ~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~~ll~~~~~~~tv~a~~~~~  276 (602)
                      .+......+.|++|++|+.+||.++.+|||.+|.|+++... ++++.++..+.+|++||+.   .+.+...++.+.+++.
T Consensus        33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~---~~~~~~~~~~A~~ds~  109 (230)
T PRK09391         33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLE---SGSTHRFTAEAIVDTT  109 (230)
T ss_pred             cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceeccc---CCCcCCeEEEEcCceE
Confidence            45566678999999999999999999999999999999754 4567788899999999964   4566789999999999


Q ss_pred             EEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432          277 LLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK  309 (602)
Q Consensus       277 l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~  309 (602)
                      ++.++.+.|.+++..+|+....+++.+..+...
T Consensus       110 v~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~  142 (230)
T PRK09391        110 VRLIKRRSLEQAAATDVDVARALLSLTAGGLRH  142 (230)
T ss_pred             EEEEEHHHHHHHHhhChHHHHHHHHHHHHHHHH
Confidence            999999999999999999998888776655443

>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]

Probab=98.97  E-value=1.3e-09  Score=102.88  Aligned_cols=118  Identities=22%  Similarity=0.309  Sum_probs=108.3

Q ss_pred             HHhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCee
Q 038432          175 QHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMF  254 (602)
Q Consensus       175 ~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~f  254 (602)
                      ..++.++|+++|+++.|.......++..+.+..|.+|+.|+.+|+.++.+|+|.+|+|.+....++  ..+ .++.|++|
T Consensus       235 rkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~--v~v-kl~~~dyf  311 (368)
T KOG1113|consen  235 RKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG--VEV-KLKKGDYF  311 (368)
T ss_pred             hhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCC--eEE-Eechhhhc
Confidence            457888999999999999999999999999999999999999999999999999999999865533  556 99999999


Q ss_pred             ehhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHH
Q 038432          255 GEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQED  295 (602)
Q Consensus       255 Ge~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~  295 (602)
                      |+.+++.+.++.+++.+.+...+..+++..|..++....+.
T Consensus       312 ge~al~~~~pr~Atv~a~~~~kc~~~dk~~ferllgpc~di  352 (368)
T KOG1113|consen  312 GELALLKNLPRAATVVAKGRLKCAKLDKPRFERLLGPCQDI  352 (368)
T ss_pred             chHHHHhhchhhceeeccCCceeeeeChHHHHHHhhHHHHH
Confidence            99999999999999999999999999999999888766543

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.96  E-value=9.7e-10  Score=107.19  Aligned_cols=88  Identities=19%  Similarity=0.191  Sum_probs=74.2

Q ss_pred             HHHHHHHcCChhHHHHHHhcCCCCCC---CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHH
Q 038432          417 ALWEAISSKHHSIFRILYHCTAISDP---YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEM  493 (602)
Q Consensus       417 pLh~A~~~~~~~~~~~Ll~~g~~~~~---~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~i  493 (602)
                      -||-+++.|+.++.--|+..||++|.   ..|.||||.|++.|+..-+++|+-+|||+++.|.+|+||+.+|-..||-++
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            47888888888888888888888887   678888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHCCCCc
Q 038432          494 VNFLVMNGSDV  504 (602)
Q Consensus       494 v~~Ll~~ga~~  504 (602)
                      .+-|++.-.++
T Consensus       216 aeRl~e~~y~v  226 (669)
T KOG0818|consen  216 AERLVEIQYEL  226 (669)
T ss_pred             HHHHHHHHHHH
Confidence            88888765444

>PF13606 Ank_3: Ankyrin repeat

Probab=98.94  E-value=1.1e-09  Score=66.13  Aligned_cols=30  Identities=33%  Similarity=0.694  Sum_probs=24.7

Q ss_pred             CCcCHHHHHHHcCcHHHHHHHHHCCCCccc
Q 038432          477 HGRTAIEIAMAENNVEMVNFLVMNGSDVVG  506 (602)
Q Consensus       477 ~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~  506 (602)
                      +|+||||+||..|+.+++++|+++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            478888888888888888888888888863

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.90  E-value=2e-09  Score=67.19  Aligned_cols=33  Identities=21%  Similarity=0.481  Sum_probs=28.5

Q ss_pred             CCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCC
Q 038432          477 HGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK  509 (602)
Q Consensus       477 ~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~  509 (602)
                      +|+||||+|+..|+.+++++|+++|+|++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            588899999999999999999999999888774

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PRK13918 CRP/FNR family transcriptional regulator; Provisional

Probab=98.90  E-value=2e-08  Score=93.50  Aligned_cols=98  Identities=17%  Similarity=0.278  Sum_probs=80.6

Q ss_pred             hccceecCCCCeEEccCC--CCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehhhhhcCCCceeEEEEcceeEEE
Q 038432          202 KMKAEYIPPREDVIMQNE--APDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLL  278 (602)
Q Consensus       202 ~~~~~~~~~g~~i~~~g~--~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~~ll~~~~~~~tv~a~~~~~l~  278 (602)
                      .++...|++|++|+.+||  +++.+|+|.+|.|+++... +|++.++..+.+|++||+.+++ +.+++.++.|.+++.++
T Consensus         5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~-~~~~~~~~~A~~~~~v~   83 (202)
T PRK13918          5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALA-GAERAYFAEAVTDSRID   83 (202)
T ss_pred             ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhc-CCCCCceEEEcCceEEE
Confidence            456788999999999999  7799999999999998754 5688899999999999997654 57788999999999999


Q ss_pred             EeeHHHHHHHHHhChHHHHHHHHHHHHh
Q 038432          279 RLKTSALIEAMQSKQEDNVSILKNFLQQ  306 (602)
Q Consensus       279 ~l~~~~~~~~l~~~~~~~~~il~~ll~~  306 (602)
                      .++...+      .|.....+++.+...
T Consensus        84 ~i~~~~~------~~~~~~~l~~~l~~~  105 (202)
T PRK13918         84 VLNPALM------SAEDNLVLTQHLVRT  105 (202)
T ss_pred             EEEHHHc------ChhhHHHHHHHHHHH
Confidence            9999876      345555555554433

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.90  E-value=7.6e-10  Score=114.32  Aligned_cols=79  Identities=22%  Similarity=0.241  Sum_probs=57.8

Q ss_pred             CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCC-CCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHH
Q 038432          443 YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDR-HGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDML  521 (602)
Q Consensus       443 ~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~-~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~  521 (602)
                      ..|+|+||+|+..|..+++++|+++|+|++.+|. .|+||||-|+..|+.+++-+||++|+.+.++|++|.+||++.++.
T Consensus        50 ~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen   50 RYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             hhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHHHhhc
Confidence            5566666666666666777777777777777774 577777777777777777777777777777777777777776653

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.88  E-value=1e-09  Score=106.57  Aligned_cols=90  Identities=22%  Similarity=0.309  Sum_probs=84.6

Q ss_pred             cchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHC-CCCcccCCCCCCChhhHHHHHHH
Q 038432          445 AGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMN-GSDVVGANKCEFSSTNLNDMLQK  523 (602)
Q Consensus       445 g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~-ga~~~~~d~~g~t~l~~a~~~~~  523 (602)
                      +..++.+|++.|+...++.+.-.|.|++.+|.+.+|+||.||..|+.+++++|++. +.|++.+|.+|+|||+-|...++
T Consensus       506 ~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h  585 (622)
T KOG0506|consen  506 TVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKH  585 (622)
T ss_pred             chhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCc
Confidence            34579999999999999999999999999999999999999999999999999985 99999999999999999999999


Q ss_pred             Hhhhceeeecc
Q 038432          524 REIGHRITVHD  534 (602)
Q Consensus       524 ~~~~~~l~~~~  534 (602)
                      .+++++|....
T Consensus       586 ~~v~k~L~~~~  596 (622)
T KOG0506|consen  586 KEVVKLLEEAQ  596 (622)
T ss_pred             HHHHHHHHHHh
Confidence            99999887664

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.87  E-value=2.5e-09  Score=103.91  Aligned_cols=95  Identities=27%  Similarity=0.386  Sum_probs=87.6

Q ss_pred             CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhc-ccCCCchhhHHHHhccchh
Q 038432          327 GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKH-ASNVHLRDYIIFMYNLSYD  405 (602)
Q Consensus       327 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~~  405 (602)
                      ++.++..++++|+..|++..++.+.-.|.|++.+|.+.+|+||+|+..|+.+++++|++. +.|++.+|           
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kD-----------  570 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKD-----------  570 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhh-----------
Confidence            345567789999999999999999999999999999999999999999999999999985 89999998           


Q ss_pred             HHHHhhccCCcHHHHHHHcCChhHHHHHHhcCC
Q 038432          406 IIILLDMNGNTALWEAISSKHHSIFRILYHCTA  438 (602)
Q Consensus       406 ~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~  438 (602)
                            ..|+|||.-|...+|.+++++|-+.-.
T Consensus       571 ------Rw~rtPlDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  571 ------RWGRTPLDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             ------ccCCCcchHhHhcCcHHHHHHHHHHhc
Confidence                  999999999999999999999976543

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.87  E-value=6.9e-09  Score=101.36  Aligned_cols=87  Identities=13%  Similarity=0.239  Sum_probs=80.8

Q ss_pred             hHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhh
Q 038432          448 LLCTAEKRNDMSVMEELVKYGLNVDSKD-RHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREI  526 (602)
Q Consensus       448 ~L~~A~~~~~~~~~~~Ll~~ga~~n~~d-~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~  526 (602)
                      -||.+++.|+.++.-.|+..||++|..+ ..|.||||.|++.|+.--+++|+-+|||++..|.+|.||+++|...|+.++
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            4899999999999999999999999876 479999999999999999999999999999999999999999999999998


Q ss_pred             hceeeecc
Q 038432          527 GHRITVHD  534 (602)
Q Consensus       527 ~~~l~~~~  534 (602)
                      ++.|.+..
T Consensus       216 aeRl~e~~  223 (669)
T KOG0818|consen  216 AERLVEIQ  223 (669)
T ss_pred             HHHHHHHH
Confidence            88776543

>PF13606 Ank_3: Ankyrin repeat

Probab=98.85  E-value=2.7e-09  Score=64.41  Aligned_cols=30  Identities=50%  Similarity=0.762  Sum_probs=25.8

Q ss_pred             CCchHHHHHHhcCChHHHHHHHhcccCCCc
Q 038432          363 KGRTPLHIAASKGHEECVLVLLKHASNVHL  392 (602)
Q Consensus       363 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~  392 (602)
                      +|+||||+||+.|+.++|++|+++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            588899999999999999999998888873

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.78  E-value=4.9e-09  Score=108.51  Aligned_cols=85  Identities=20%  Similarity=0.173  Sum_probs=78.1

Q ss_pred             hHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC---CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCH
Q 038432          405 DIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP---YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTA  481 (602)
Q Consensus       405 ~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~---~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~Tp  481 (602)
                      ...+.+|..|+|+||+|+..+..+++++|+++|+|++.   ..|+||||-|+.+|+.+++-.|+.+|+....+|++|.+|
T Consensus        43 n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsp  122 (1267)
T KOG0783|consen   43 NLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSP  122 (1267)
T ss_pred             hhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCH
Confidence            33445569999999999999999999999999999976   789999999999999999999999999999999999999


Q ss_pred             HHHHHHcC
Q 038432          482 IEIAMAEN  489 (602)
Q Consensus       482 Lh~A~~~~  489 (602)
                      |..-++-.
T Consensus       123 lq~~~r~~  130 (1267)
T KOG0783|consen  123 LQFLSRVL  130 (1267)
T ss_pred             HHHHhhcc
Confidence            99988743

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.72  E-value=1.4e-08  Score=63.42  Aligned_cols=32  Identities=50%  Similarity=0.883  Sum_probs=28.9

Q ss_pred             CCchHHHHHHhcCChHHHHHHHhcccCCCchh
Q 038432          363 KGRTPLHIAASKGHEECVLVLLKHASNVHLRD  394 (602)
Q Consensus       363 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~  394 (602)
                      +|+||||+|+..|+.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            58999999999999999999999999998875

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.69  E-value=2.4e-08  Score=99.11  Aligned_cols=115  Identities=15%  Similarity=0.127  Sum_probs=92.7

Q ss_pred             HHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCC--CCCCCCCCcCHHHHHHHcCcHHHHH
Q 038432          420 EAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLN--VDSKDRHGRTAIEIAMAENNVEMVN  495 (602)
Q Consensus       420 ~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~--~n~~d~~g~TpLh~A~~~~~~~iv~  495 (602)
                      .|+..++.--++-+-.+|.+.-.  .+..+.||+|++.|+-++|+|++++|..  .+..|..|.|+||-|+..++..+.+
T Consensus       872 ~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~  951 (1004)
T KOG0782|consen  872 RAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQ  951 (1004)
T ss_pred             HHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHH
Confidence            34444443323333334443322  6678899999999999999999999964  5778899999999999999999999


Q ss_pred             HHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432          496 FLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD  534 (602)
Q Consensus       496 ~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~  534 (602)
                      +|++.||.+...|..|.||-.-|...++.+.+.+|..+.
T Consensus       952 ~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  952 LLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             HHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhhh
Confidence            999999999999999999999999999988888877654

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.68  E-value=6.9e-08  Score=95.88  Aligned_cols=89  Identities=18%  Similarity=0.188  Sum_probs=82.6

Q ss_pred             ccCCcHHHHHHHcCChhHHHHHHhcCC----CCCCCCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHH
Q 038432          412 MNGNTALWEAISSKHHSIFRILYHCTA----ISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMA  487 (602)
Q Consensus       412 ~~g~tpLh~A~~~~~~~~~~~Ll~~g~----~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~  487 (602)
                      .+..|-||+|+..|+-++|++++++|.    |.-...|.|+||.|+..++..++++|++.||.....|..|.||-.-|-+
T Consensus       897 ~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqq  976 (1004)
T KOG0782|consen  897 PDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQ  976 (1004)
T ss_pred             cchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHh
Confidence            778899999999999999999999997    3333899999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHC
Q 038432          488 ENNVEMVNFLVMN  500 (602)
Q Consensus       488 ~~~~~iv~~Ll~~  500 (602)
                      .|+.+++.+|-..
T Consensus       977 a~d~dlaayle~r  989 (1004)
T KOG0782|consen  977 AGDPDLAAYLESR  989 (1004)
T ss_pred             cCCchHHHHHhhh
Confidence            9999999998754

>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]

Probab=98.65  E-value=3.1e-10  Score=106.46  Aligned_cols=89  Identities=20%  Similarity=0.223  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCCchHHHHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHH
Q 038432           15 DIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFN   94 (602)
Q Consensus        15 ~l~~~H~~aC~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g   94 (602)
                      +++++-++|-+.|.-+.+....           ....+.+.+--.|+|||++|||||||||..|.|..++++..++.|.|
T Consensus       363 LLIFFlfIgviLFsSavYFAEa-----------de~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaG  431 (507)
T KOG1545|consen  363 LLIFFLFIGVILFSSAVYFAEA-----------DEPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAG  431 (507)
T ss_pred             HHHHHHHHHHHHHhceeeeeec-----------CCCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhh
Confidence            5666666677766655543211           11123344455799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhH
Q 038432           95 LGLTAYLIGNMTNLVVEGTR  114 (602)
Q Consensus        95 ~~~~~~~i~~i~~~~~~~~~  114 (602)
                      ++..|..+..+.+-+.-.+.
T Consensus       432 VLTiALPVPVIVsNFnyFYh  451 (507)
T KOG1545|consen  432 VLTIALPVPVIVSNFNYFYH  451 (507)
T ss_pred             heEecccccEEEecccceee
Confidence            99999887766554443333

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.58  E-value=1.8e-07  Score=98.51  Aligned_cols=130  Identities=22%  Similarity=0.216  Sum_probs=90.7

Q ss_pred             chhhhHhhhcCcHHHHHHHHhc----CCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHH
Q 038432          332 SVNLLTVASTGNAAFLDELLKA----RLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDII  407 (602)
Q Consensus       332 ~t~L~~A~~~g~~~~~~~Ll~~----g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~  407 (602)
                      .-....|+..|+...++..++.    ..++|.+|.-|+++|+.|+.+.+.+++++|++++...  .              
T Consensus        26 e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--g--------------   89 (822)
T KOG3609|consen   26 EKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--G--------------   89 (822)
T ss_pred             hHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--c--------------
Confidence            3456778888888888888763    2567788888888888888888888888888876544  2              


Q ss_pred             HHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCCCCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHH
Q 038432          408 ILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMA  487 (602)
Q Consensus       408 ~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~  487 (602)
                              .+|.+|+..|..++|++++.+-........                     .+..-...-..+.|||.+||.
T Consensus        90 --------dALL~aI~~~~v~~VE~ll~~~~~~~~~~~---------------------~~d~~~~~ft~ditPliLAAh  140 (822)
T KOG3609|consen   90 --------DALLLAIAVGSVPLVELLLVHFVDAPYLER---------------------SGDANSPHFTPDITPLMLAAH  140 (822)
T ss_pred             --------hHHHHHHHHHHHHHHHHHHhcccccchhcc---------------------ccccCcccCCCCccHHHHHHH
Confidence                    478888888888888888876543321100                     111112233456677777777


Q ss_pred             cCcHHHHHHHHHCCCCccc
Q 038432          488 ENNVEMVNFLVMNGSDVVG  506 (602)
Q Consensus       488 ~~~~~iv~~Ll~~ga~~~~  506 (602)
                      .+|.||+++|+++|+++..
T Consensus       141 ~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen  141 LNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             hcchHHHHHHHHcCCCCCC
Confidence            7777777777777777643

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.57  E-value=1.3e-07  Score=94.41  Aligned_cols=87  Identities=22%  Similarity=0.318  Sum_probs=61.0

Q ss_pred             HHHHHHcCChhHHHHHHhcCCCC--CC----CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcH
Q 038432          418 LWEAISSKHHSIFRILYHCTAIS--DP----YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNV  491 (602)
Q Consensus       418 Lh~A~~~~~~~~~~~Ll~~g~~~--~~----~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~  491 (602)
                      |.-|+...+...+-+||.+|...  |.    .+|+|+||+||..|++.+.++|+=+|+|+-++|.+|+|||.||-+.|.-
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            45566666677777777776532  22    4567777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHCCCCc
Q 038432          492 EMVNFLVMNGSDV  504 (602)
Q Consensus       492 ~iv~~Ll~~ga~~  504 (602)
                      +++.+|+++|+..
T Consensus       708 ec~d~llq~gcp~  720 (749)
T KOG0705|consen  708 ECIDVLLQYGCPD  720 (749)
T ss_pred             HHHHHHHHcCCCc
Confidence            7777777777643

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.56  E-value=6.2e-08  Score=96.29  Aligned_cols=86  Identities=26%  Similarity=0.283  Sum_probs=52.7

Q ss_pred             hHHHHHhcCCHHHHHHHH--HcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHh
Q 038432          448 LLCTAEKRNDMSVMEELV--KYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKRE  525 (602)
Q Consensus       448 ~L~~A~~~~~~~~~~~Ll--~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~  525 (602)
                      |+|.++.....+-+..++  +.+..++.+|..|+||||+|+..|+.+.++.|+.+|||+..+|++|++|||-|+..|+.+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence            355555555444333322  234456666666777777777777777777777777777777777777777777666665


Q ss_pred             hhceeeec
Q 038432          526 IGHRITVH  533 (602)
Q Consensus       526 ~~~~l~~~  533 (602)
                      ++..++.+
T Consensus       103 ~i~~vlr~  110 (560)
T KOG0522|consen  103 IITEVLRH  110 (560)
T ss_pred             HHHHHHHH
Confidence            55554444

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.54  E-value=1.6e-07  Score=93.36  Aligned_cols=87  Identities=30%  Similarity=0.400  Sum_probs=75.9

Q ss_pred             hhhhHhhhcCcHHHHHHHHh--cCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHh
Q 038432          333 VNLLTVASTGNAAFLDELLK--ARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILL  410 (602)
Q Consensus       333 t~L~~A~~~g~~~~~~~Ll~--~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~  410 (602)
                      -|+|.++...+.+-+...+.  .+..++..|..|+||||+|+..|+.+.++.|+.+||++..++                
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN----------------   85 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKN----------------   85 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccc----------------
Confidence            45999999888877666544  356788899999999999999999999999999999999998                


Q ss_pred             hccCCcHHHHHHHcCChhHHHHHHhc
Q 038432          411 DMNGNTALWEAISSKHHSIFRILYHC  436 (602)
Q Consensus       411 ~~~g~tpLh~A~~~~~~~~~~~Ll~~  436 (602)
                       +.|++|||.|+..|+.+++..++.+
T Consensus        86 -~~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   86 -NEGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             -cccccHHHHHHHcCCHHHHHHHHHH
Confidence             9999999999999999888777653

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.50  E-value=5.3e-08  Score=105.66  Aligned_cols=82  Identities=21%  Similarity=0.241  Sum_probs=77.0

Q ss_pred             CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHH
Q 038432          443 YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQ  522 (602)
Q Consensus       443 ~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~  522 (602)
                      ..|.|+||.|+..+..-++++|+++|+++|..|..|+||||.+...|+...+..|+++||++++.|.+|.+|+++|....
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAA  733 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhc
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999997664


Q ss_pred             HH
Q 038432          523 KR  524 (602)
Q Consensus       523 ~~  524 (602)
                      +.
T Consensus       734 ~~  735 (785)
T KOG0521|consen  734 NA  735 (785)
T ss_pred             cc
Confidence            43

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.50  E-value=2.9e-07  Score=91.98  Aligned_cols=90  Identities=27%  Similarity=0.326  Sum_probs=64.4

Q ss_pred             hhHhhhcCcHHHHHHHHhcCCC--CCC--CCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHh
Q 038432          335 LLTVASTGNAAFLDELLKARLD--PDI--GDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILL  410 (602)
Q Consensus       335 L~~A~~~g~~~~~~~Ll~~g~~--~n~--~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~  410 (602)
                      |..|+...++..+-.||.+|..  +|.  .+.+|+|+||+||..|++.+.++|+=+|+|+-.+|                
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rd----------------  691 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARD----------------  691 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecc----------------
Confidence            4556666677777777776633  232  25567788888888888888888887788887777                


Q ss_pred             hccCCcHHHHHHHcCChhHHHHHHhcCCCCC
Q 038432          411 DMNGNTALWEAISSKHHSIFRILYHCTAISD  441 (602)
Q Consensus       411 ~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~  441 (602)
                       ..|+|||.||-+.|..+|+.+|+++|....
T Consensus       692 -a~g~t~l~yar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  692 -AHGRTALFYARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             -cCCchhhhhHhhcccHHHHHHHHHcCCCcc
Confidence             778888888888888888888887776443

>PRK10537 voltage-gated potassium channel; Provisional

Probab=98.35  E-value=2e-06  Score=87.07  Aligned_cols=54  Identities=33%  Similarity=0.533  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038432           56 RYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLV  109 (602)
Q Consensus        56 ~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~  109 (602)
                      .+.+|+||++.|+||+||||+.|.+..+++|+++++++|+.+|++.++.+...+
T Consensus       168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~  221 (393)
T PRK10537        168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV  221 (393)
T ss_pred             CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999998887644

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.33  E-value=4.4e-07  Score=98.70  Aligned_cols=89  Identities=21%  Similarity=0.265  Sum_probs=82.0

Q ss_pred             ccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcC
Q 038432          412 MNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAEN  489 (602)
Q Consensus       412 ~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~  489 (602)
                      ..|.|+||.|+..|..-++++|++.|+++|.  ..|++|||.+...|+...+..|+++|++.++.|.+|.+||++|....
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAA  733 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhc
Confidence            5689999999999999999999999999998  88999999999999999999999999999999999999999998887


Q ss_pred             cHHHHHHHHHC
Q 038432          490 NVEMVNFLVMN  500 (602)
Q Consensus       490 ~~~iv~~Ll~~  500 (602)
                      +.+++-+|...
T Consensus       734 ~~d~~~l~~l~  744 (785)
T KOG0521|consen  734 NADIVLLLRLA  744 (785)
T ss_pred             cccHHHHHhhh
Confidence            77777666543

>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]

Probab=98.32  E-value=5.1e-06  Score=81.66  Aligned_cols=91  Identities=16%  Similarity=0.303  Sum_probs=75.0

Q ss_pred             hHHHHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHhhhHHHHHhhhhc
Q 038432           53 LWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGR  132 (602)
Q Consensus        53 ~~~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~  132 (602)
                      ....|+.|+|....|+.++||||++|.|..++.++++..++|..+.+.+++.++.        .-+..+--+.+++||-.
T Consensus       284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisR--------KLeLt~aEKhVhNFMmD  355 (489)
T KOG3684|consen  284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIAR--------KLELTKAEKHVHNFMMD  355 (489)
T ss_pred             hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence            4567999999999999999999999999999999999999999999999998874        33444555678888888


Q ss_pred             CCCChhHHHHHHHHHHHHH
Q 038432          133 NRLPPRLKKQILAYMCLRF  151 (602)
Q Consensus       133 ~~l~~~l~~ri~~y~~~~~  151 (602)
                      .++.+++++-..+-++..|
T Consensus       356 tqLTk~~KnAAA~VLqeTW  374 (489)
T KOG3684|consen  356 TQLTKEHKNAAANVLQETW  374 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            8888777776555554443

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=98.31  E-value=1.5e-06  Score=80.54  Aligned_cols=91  Identities=20%  Similarity=0.304  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCCchHHHHHHHHHHHHHHHhhcccCccccc-----cchhHHHH-H
Q 038432           15 DIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAV-----NTVEMIFI-I   88 (602)
Q Consensus        15 ~l~~~H~~aC~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~Y~~s~ywa~~t~~tvGygd~~~~-----~~~e~~~~-~   88 (602)
                      +++++|++||+++.+..........+......+....+.++.|..|+||...++|+.|+||..+.     +..+.++. +
T Consensus       104 ~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~  183 (200)
T PF00520_consen  104 LFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFIS  183 (200)
T ss_dssp             HHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHH
T ss_pred             cccccccccchhheecccccccccccccccccccccccccccccccccccccccccCCccccccccccccchhHhHHhhh
Confidence            77888999999998876543322221122223445556788999999999999999999999887     78888888 6


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 038432           89 FYMLFNLGLTAYLIGNM  105 (602)
Q Consensus        89 ~~~~~g~~~~~~~i~~i  105 (602)
                      +..+++.++++.++|.+
T Consensus       184 ~~~i~~~~l~nlliavi  200 (200)
T PF00520_consen  184 FIIIVSILLLNLLIAVI  200 (200)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHhcC
Confidence            66677778889988865

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.29  E-value=6.2e-07  Score=77.26  Aligned_cols=63  Identities=22%  Similarity=0.291  Sum_probs=34.0

Q ss_pred             CCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCC-CCcccCCCCCCChhhHHHHHHHHhhhceee
Q 038432          469 LNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNG-SDVVGANKCEFSSTNLNDMLQKREIGHRIT  531 (602)
Q Consensus       469 a~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~g-a~~~~~d~~g~t~l~~a~~~~~~~~~~~l~  531 (602)
                      .++|++|..|+|||+.|+..|+.+.+.+|+.+| ++|...|..|.+++.+|.+.|..++++.|.
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lf   66 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLF   66 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHH
Confidence            345555555555555555555555555555555 555555555555555555555555555443

>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]

Probab=98.24  E-value=1.4e-06  Score=91.84  Aligned_cols=114  Identities=19%  Similarity=0.253  Sum_probs=100.8

Q ss_pred             HHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehhhhhcCCCceeEEEEc
Q 038432          194 EIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTK  272 (602)
Q Consensus       194 ~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~~ll~~~~~~~tv~a~  272 (602)
                      .++..+=..+......+|+.++++||..+++|+|.+|.++-.... +++...+..++.||.+|+..++++.++..|+.|.
T Consensus       499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~lt~~~R~tTv~Av  578 (1158)
T KOG2968|consen  499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEMLTKQPRATTVMAV  578 (1158)
T ss_pred             HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceeehhHHhhcCCccceEEEE
Confidence            345566667778999999999999999999999999999987653 3355588999999999999999999999999999


Q ss_pred             ceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhh
Q 038432          273 TLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQH  307 (602)
Q Consensus       273 ~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~  307 (602)
                      .++++.+++...|..+..++|....++.+.+.++.
T Consensus       579 RdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~  613 (1158)
T KOG2968|consen  579 RDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKI  613 (1158)
T ss_pred             eehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            99999999999999999999999988888776664

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.22  E-value=3e-06  Score=73.14  Aligned_cols=70  Identities=23%  Similarity=0.177  Sum_probs=62.7

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcc-cCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHH
Q 038432          354 RLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHA-SNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRI  432 (602)
Q Consensus       354 g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~  432 (602)
                      +.++|.+|..|+|||+.|+..|+.+.|.+|+.+| +.+...|                 ..|.+++.+|-..|..+.++.
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d-----------------~ssldaaqlaek~g~~~fvh~   64 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTD-----------------ESSLDAAQLAEKGGAQAFVHS   64 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccc-----------------cccchHHHHHHhcChHHHHHH
Confidence            4588999999999999999999999999999999 8898887                 999999999999999999999


Q ss_pred             HHhcCCCC
Q 038432          433 LYHCTAIS  440 (602)
Q Consensus       433 Ll~~g~~~  440 (602)
                      |.+...+.
T Consensus        65 lfe~~~et   72 (223)
T KOG2384|consen   65 LFENDRET   72 (223)
T ss_pred             HHHHhccC
Confidence            98875443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.21  E-value=5.4e-06  Score=79.01  Aligned_cols=68  Identities=24%  Similarity=0.300  Sum_probs=54.2

Q ss_pred             hHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChh
Q 038432          448 LLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSST  515 (602)
Q Consensus       448 ~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l  515 (602)
                      -|..||+.|+.+.+++|++.|.++|+.|....+||.+|+-.||..+|++|+++||-...-..+|..++
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~  106 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCH  106 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhh
Confidence            36778888888888888888888888888888888888888888888888888887665555565543

>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.19  E-value=5.9e-07  Score=89.73  Aligned_cols=130  Identities=17%  Similarity=0.321  Sum_probs=86.4

Q ss_pred             hHHHHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHhhhHHHHHhhhhc
Q 038432           53 LWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGR  132 (602)
Q Consensus        53 ~~~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~  132 (602)
                      ....|+.|.|+-++||+||||||+...|..++.|.+|++++|..+||..+..+..++.+..+-.-+|+..--.     ++
T Consensus       285 hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~ehgk-----kh  359 (1103)
T KOG1420|consen  285 HRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEHGK-----KH  359 (1103)
T ss_pred             ccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhcCC-----ee
Confidence            3457999999999999999999999999999999999999999999999999999998877655555432100     00


Q ss_pred             CCCC-hhHHHHHHHHHHHHHHh-h-cchh-HHHHhhCCHHHHHHHHHHhhHhhhhhhccccc
Q 038432          133 NRLP-PRLKKQILAYMCLRFKA-E-SLNQ-HQLIEQLPKSICKSICQHLFLHTVEKVYLFKD  190 (602)
Q Consensus       133 ~~l~-~~l~~ri~~y~~~~~~~-~-~~~~-~~~l~~lp~~l~~~v~~~~~~~~l~~~~~f~~  190 (602)
                      .-+- .-..+.|..|+.-.... + ..+. .-++..+||.|.-|   .+++....++.||++
T Consensus       360 ivvcghityesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqg  418 (1103)
T KOG1420|consen  360 IVVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQG  418 (1103)
T ss_pred             EEEecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecc
Confidence            0000 11123344444322211 1 1221 23566777776554   355566667777764

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.13  E-value=4.5e-06  Score=79.52  Aligned_cols=60  Identities=22%  Similarity=0.320  Sum_probs=56.5

Q ss_pred             hhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCch
Q 038432          334 NLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLR  393 (602)
Q Consensus       334 ~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~  393 (602)
                      -|..||+.|+.+.+++|++.|.++|.+|....+||.+|+..||.++|++|+++||-...-
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rd   98 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRD   98 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCccccc
Confidence            489999999999999999999999999999999999999999999999999999866543

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.13  E-value=6.2e-06  Score=89.19  Aligned_cols=126  Identities=15%  Similarity=0.096  Sum_probs=70.4

Q ss_pred             CCCCCCCCchHHHHHHhcCChHHHHHHHhc-ccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHh
Q 038432          357 PDIGDSKGRTPLHIAASKGHEECVLVLLKH-ASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYH  435 (602)
Q Consensus       357 ~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~  435 (602)
                      .......|+|.||+++..++.-.++.+++. |...+..|                 .+|.-.+|+ |..++.+.+-+|+.
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld-----------------~d~qgV~hf-ca~lg~ewA~ll~~  628 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELD-----------------RDGQGVIHF-CAALGYEWAFLPIS  628 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhc-----------------ccCCChhhH-hhhcCCceeEEEEe
Confidence            344556788888888888888888888875 55555444                 667777777 33344444333321


Q ss_pred             cCCCCCCCCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcc------cCCC
Q 038432          436 CTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVV------GANK  509 (602)
Q Consensus       436 ~g~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~------~~d~  509 (602)
                                                    -+|..++.+|..|+||||+|+..|+..++..|++.|++..      ..+-
T Consensus       629 ------------------------------~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p  678 (975)
T KOG0520|consen  629 ------------------------------ADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETP  678 (975)
T ss_pred             ------------------------------ecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCC
Confidence                                          2344455555555555555555555555555555444332      1222


Q ss_pred             CCCChhhHHHHHHHHhhhcee
Q 038432          510 CEFSSTNLNDMLQKREIGHRI  530 (602)
Q Consensus       510 ~g~t~l~~a~~~~~~~~~~~l  530 (602)
                      .|.|+-.+|...++..+..+|
T Consensus       679 ~g~ta~~la~s~g~~gia~~l  699 (975)
T KOG0520|consen  679 GGKTAADLARANGHKGIAGYL  699 (975)
T ss_pred             CCCchhhhhhcccccchHHHH
Confidence            355555555555554444443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.02  E-value=6.2e-06  Score=89.20  Aligned_cols=123  Identities=15%  Similarity=0.046  Sum_probs=100.2

Q ss_pred             CCCCCchhhhHhhhcCcHHHHHHHHhc-CCCCCCCCCCCchHHHHHHhcCChHHHHHHHh-cccCCCchhhHHHHhccch
Q 038432          327 GDPNMSVNLLTVASTGNAAFLDELLKA-RLDPDIGDSKGRTPLHIAASKGHEECVLVLLK-HASNVHLRDYIIFMYNLSY  404 (602)
Q Consensus       327 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~-g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~~~~~~~  404 (602)
                      ....|.+.+|.++..++...++.+++- |...+..|.+|.-.+|+ |..++.+++-+|+. .|..++.+|          
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D----------  638 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRD----------  638 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeeccccccccc----------
Confidence            556789999999999999999999985 66667777888888888 55566666665554 588999988          


Q ss_pred             hHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--------CCcchhHHHHHhcCCHHHHHHHHHc
Q 038432          405 DIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--------YTAGDLLCTAEKRNDMSVMEELVKY  467 (602)
Q Consensus       405 ~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--------~~g~t~L~~A~~~~~~~~~~~Ll~~  467 (602)
                             ..|+||||+|+..|+..++..|++.|++...        ..|.|+-..|..+|+..+.-+|-+.
T Consensus       639 -------~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  639 -------RNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             -------CCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence                   9999999999999999999999988875542        4577888888888888877777655

>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]

Probab=97.96  E-value=4.7e-07  Score=86.23  Aligned_cols=60  Identities=23%  Similarity=0.291  Sum_probs=49.8

Q ss_pred             hHHHHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038432           53 LWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEG  112 (602)
Q Consensus        53 ~~~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~  112 (602)
                      .++....+||++++||||.||||.+|.|.++++|..++.+.|+++.|+.+..+.+-+...
T Consensus       353 ~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRI  412 (632)
T KOG4390|consen  353 KFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRI  412 (632)
T ss_pred             ccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHH
Confidence            334445799999999999999999999999999999999999999988776555444433

>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=97.83  E-value=0.00015  Score=71.71  Aligned_cols=93  Identities=24%  Similarity=0.330  Sum_probs=63.0

Q ss_pred             HHHHHHH--HHHHHHHHhhcCCC-C----CCccccccCCCCCCCchHHHHHHHHHHHHHHHhhcccCc--cccccchhHH
Q 038432           15 DIILVHC--AGCLYYLLADRYPH-K----GETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGD--LHAVNTVEMI   85 (602)
Q Consensus        15 ~l~~~H~--~aC~~~~~~~~~~~-~----~~~w~~~~~~~~~~~~~~~~Y~~s~ywa~~t~~tvGygd--~~~~~~~e~~   85 (602)
                      +.+++.|  +|++||+++....+ .    +..|-+     +.  .....+..+|++++.|+||+|||.  +.|......+
T Consensus        43 ~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~-----Cv--~~~~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~  115 (336)
T PF01007_consen   43 LSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTP-----CV--SNVNSFTSAFLFSVETQTTIGYGSRYPTPECPYAIF  115 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-T-----SE--CT-TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccchhcccccCCCC-----ce--ecccchhhheeEEEEEEEEeccCCcccCCCcchhHH
Confidence            4444444  68999998854322 1    112211     00  113468999999999999999998  5677788888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 038432           86 FIIFYMLFNLGLTAYLIGNMTNLVVEGTR  114 (602)
Q Consensus        86 ~~~~~~~~g~~~~~~~i~~i~~~~~~~~~  114 (602)
                      +..+-+++|.++.++++|.+..-+....+
T Consensus       116 l~~~q~~~g~l~~a~~~Glvfar~srP~~  144 (336)
T PF01007_consen  116 LVTIQSLVGLLLDAFMTGLVFARFSRPKK  144 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            88899999999999999999887765543

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.81  E-value=4.4e-05  Score=80.99  Aligned_cols=134  Identities=19%  Similarity=0.160  Sum_probs=101.9

Q ss_pred             CCchHHHHHHhcCChHHHHHHHhcc----cCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCC
Q 038432          363 KGRTPLHIAASKGHEECVLVLLKHA----SNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTA  438 (602)
Q Consensus       363 ~g~t~Lh~A~~~g~~~~v~~Ll~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~  438 (602)
                      .+.--.-.||..|+.-.|+..++..    .++|..|                 .-|.++|+.|+.+.+.+++++|++++.
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d-----------------~lGr~al~iai~nenle~~eLLl~~~~   86 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRD-----------------PLGRLALHIAIDNENLELQELLLDTSS   86 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhccC-----------------hHhhhceecccccccHHHHHHHhcCcc
Confidence            3445577899999999999888753    3555555                 889999999999999999999998776


Q ss_pred             CCCCCCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHH
Q 038432          439 ISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLN  518 (602)
Q Consensus       439 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a  518 (602)
                      ..     +.+|..|+..|..++++.++.+........        .               .+.+....-.-+.||+.+|
T Consensus        87 ~~-----gdALL~aI~~~~v~~VE~ll~~~~~~~~~~--------~---------------~~d~~~~~ft~ditPliLA  138 (822)
T KOG3609|consen   87 EE-----GDALLLAIAVGSVPLVELLLVHFVDAPYLE--------R---------------SGDANSPHFTPDITPLMLA  138 (822)
T ss_pred             cc-----chHHHHHHHHHHHHHHHHHHhcccccchhc--------c---------------ccccCcccCCCCccHHHHH
Confidence            55     567888888888899998888754432211        1               2333334445689999999


Q ss_pred             HHHHHHhhhceeeeccCCCchhH
Q 038432          519 DMLQKREIGHRITVHDDNSTQNE  541 (602)
Q Consensus       519 ~~~~~~~~~~~l~~~~~~~~~~~  541 (602)
                      |..++.|+++.|+..+...+...
T Consensus       139 Ah~NnyEil~~Ll~kg~~i~~PH  161 (822)
T KOG3609|consen  139 AHLNNFEILQCLLTRGHCIPIPH  161 (822)
T ss_pred             HHhcchHHHHHHHHcCCCCCCCc
Confidence            99999999999999987666443

>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]

Probab=97.58  E-value=6.7e-05  Score=78.83  Aligned_cols=58  Identities=26%  Similarity=0.583  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038432           56 RYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGT  113 (602)
Q Consensus        56 ~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~~  113 (602)
                      .+..|+|++.+++||+|||++.|.|..+++++++..++|+-++..+++.+...+...-
T Consensus       115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~  172 (433)
T KOG1418|consen  115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSL  172 (433)
T ss_pred             ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            5779999999999999999999999999999999999999999999999998877654

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.55  E-value=9.4e-05  Score=73.41  Aligned_cols=62  Identities=18%  Similarity=0.192  Sum_probs=51.2

Q ss_pred             HHHHHHHHHcCCCCC------CCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHH
Q 038432          458 MSVMEELVKYGLNVD------SKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLND  519 (602)
Q Consensus       458 ~~~~~~Ll~~ga~~n------~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~  519 (602)
                      .+.+++|.+++++.|      ..|..-.|+||+|+..|..++|..||+.|+|+..+|..|.||.+++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            567888888877765      34556678999999999999999999999999999999999988875

>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]

Probab=97.17  E-value=0.0011  Score=64.31  Aligned_cols=101  Identities=20%  Similarity=0.315  Sum_probs=71.1

Q ss_pred             hhhHHHHHHHHHHH--HHHHHHHHhhcCCCC-----CCccccccCCCCCCCchHHHHHHHHHHHHHHHhhcccCcccc--
Q 038432            8 HQDVRFCDIILVHC--AGCLYYLLADRYPHK-----GETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHA--   78 (602)
Q Consensus         8 ~~~i~~~~l~~~H~--~aC~~~~~~~~~~~~-----~~~w~~~~~~~~~~~~~~~~Y~~s~ywa~~t~~tvGygd~~~--   78 (602)
                      ..++.|.+-|+++|  ||++||+++...++-     +..|.+=.       .....+..||-|++-|=||+|||--.+  
T Consensus        64 ~~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpCV-------~nV~sf~sAFLFSiETQtTIGYG~R~vTe  136 (400)
T KOG3827|consen   64 WMLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTPCV-------MNVHSFTSAFLFSIETQTTIGYGFRYVTE  136 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCcce-------eeccchhhhheeeeeeeeeeeccccccCc
Confidence            34556667888888  699999999764431     22333211       123456788889999999999996544  


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Q 038432           79 VNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRR  115 (602)
Q Consensus        79 ~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~~~~  115 (602)
                      .=+...+..++-+|+|+++.++++|.+..-+....++
T Consensus       137 eCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPkKR  173 (400)
T KOG3827|consen  137 ECPEAIFLLVLQSILGVIINAFMVGAIFAKIARPKKR  173 (400)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence            3345566677778899999999999998766665443

>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]

Probab=97.16  E-value=0.0035  Score=67.12  Aligned_cols=111  Identities=17%  Similarity=0.291  Sum_probs=91.1

Q ss_pred             HHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehh-hh---hcCCC---ceeEE
Q 038432          198 LLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEV-GA---LCCRP---QIYTY  269 (602)
Q Consensus       198 ~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~-~l---l~~~~---~~~tv  269 (602)
                      +++.+++.+.+..|++|++.|++.+.+|.+.+|.+++.... .+++..+..+.+|+.|-.. ++   +.+.|   +...+
T Consensus       110 ~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~llk~V~~G~~~tSllSiLd~l~~~ps~~~~i~a  189 (1158)
T KOG2968|consen  110 ELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYLLKTVPPGGSFTSLLSILDSLPGFPSLSRTIAA  189 (1158)
T ss_pred             eechhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceeeEeeccCCCchHhHHHHHHhccCCCcccceeee
Confidence            44588888999999999999999999999999999998654 4578899999999766433 33   33444   35778


Q ss_pred             EEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhh
Q 038432          270 RTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHK  308 (602)
Q Consensus       270 ~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~  308 (602)
                      +|.++|.+..++...|.+....+|+....+.+..+.+..
T Consensus       190 kA~t~~tv~~~p~~sF~~~~~k~P~s~iriiQvvmTRLq  228 (1158)
T KOG2968|consen  190 KAATDCTVARIPYTSFRESFHKNPESSIRIIQVVMTRLQ  228 (1158)
T ss_pred             eeecCceEEEeccchhhhhhccChHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888776655543

>smart00248 ANK ankyrin repeats

Probab=97.09  E-value=0.00089  Score=39.45  Aligned_cols=29  Identities=34%  Similarity=0.660  Sum_probs=21.9

Q ss_pred             CCcCHHHHHHHcCcHHHHHHHHHCCCCcc
Q 038432          477 HGRTAIEIAMAENNVEMVNFLVMNGSDVV  505 (602)
Q Consensus       477 ~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~  505 (602)
                      +|.||+|+|+..++.++++.|+++|.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            36778888888888888888887777654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]

Probab=97.06  E-value=0.0013  Score=62.28  Aligned_cols=58  Identities=22%  Similarity=0.457  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHhhcccCccccccc-------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038432           56 RYISAMYWSITTMTTVGYGDLHAVNT-------V-EMIFIIFYMLFNLGLTAYLIGNMTNLVVEGT  113 (602)
Q Consensus        56 ~Y~~s~ywa~~t~~tvGygd~~~~~~-------~-e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~~  113 (602)
                      .|++|+|+.++|+||+|+||.++...       . -+.++.+.+++|..+++..++.+.-.+..++
T Consensus       186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~  251 (350)
T KOG4404|consen  186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMN  251 (350)
T ss_pred             chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            58999999999999999999988432       2 3446666677888888877776655554443

>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=97.04  E-value=0.0038  Score=64.40  Aligned_cols=200  Identities=15%  Similarity=0.156  Sum_probs=122.4

Q ss_pred             HHhhHhhhhhhcccccCCHHHHHHHHHhcccee-cCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCe
Q 038432          175 QHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEY-IPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDM  253 (602)
Q Consensus       175 ~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~-~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~  253 (602)
                      .+...+++.+.|.|.+++....++||..+.... -..|.+|...|+.-++.++|++|.|+|...++..+    .+.-|+.
T Consensus       276 ieqLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~e----~l~mGnS  351 (1283)
T KOG3542|consen  276 IEQLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKRE----ELKMGNS  351 (1283)
T ss_pred             HHHHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCceE----Eeecccc
Confidence            345567889999999999999999999887544 57899999999999999999999999998877443    5777999


Q ss_pred             eehhhhhcCCCceeEEE-EcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhhhhcccccccccccCCCCCCCCCc
Q 038432          254 FGEVGALCCRPQIYTYR-TKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMS  332 (602)
Q Consensus       254 fGe~~ll~~~~~~~tv~-a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~g~  332 (602)
                      ||...-....-....++ -..+|+...+...++..++..-.+...+.        ..     ..+......-..-+..|.
T Consensus       352 FG~~PT~dkqym~G~mRTkVDDCqFVciaqqDycrIln~vekn~~Kv--------ee-----eGEiVmv~EhReldrsGT  418 (1283)
T KOG3542|consen  352 FGAEPTPDKQYMIGEMRTKVDDCQFVCIAQQDYCRILNTVEKNIEKV--------EE-----EGEIVMVVEHRELDRSGT  418 (1283)
T ss_pred             cCCCCCcchhhhhhhhheecccceEEEeehhhHHHHHHHHHhhhhhh--------hc-----cCcEEEEEeeeeccccCc
Confidence            99764333221111222 34679999999999888776544322111        11     111111111111233343


Q ss_pred             hhhhHhhhcCcHHHHHHHHhcCCC--CCCCCCCCchHHHHHH-hcCChHHHHHHHhcccCCCchh
Q 038432          333 VNLLTVASTGNAAFLDELLKARLD--PDIGDSKGRTPLHIAA-SKGHEECVLVLLKHASNVHLRD  394 (602)
Q Consensus       333 t~L~~A~~~g~~~~~~~Ll~~g~~--~n~~d~~g~t~Lh~A~-~~g~~~~v~~Ll~~g~~~~~~~  394 (602)
                      ..=|..+..--...+..|++...+  +...+.   -.|-|-. ...-.++-+.|++.=++...+|
T Consensus       419 rkGhivIKgtperLimHLveEhs~VDPtyieD---FLLTYRtFl~sP~~vg~KLleWF~d~slRD  480 (1283)
T KOG3542|consen  419 RKGHIVIKGTPERLIMHLVEEHSNVDPTYIED---FLLTYRTFLRSPTTVGEKLLEWFADSSLRD  480 (1283)
T ss_pred             ccceEEEecChHHHHHHHHhhcccCCchHHHH---HHHHHHHHhcChHHHHHHHHHHhccchHhh
Confidence            334444444444566667765433  322221   1222322 2233466677777766666555

>smart00248 ANK ankyrin repeats

Probab=96.94  E-value=0.0012  Score=38.82  Aligned_cols=29  Identities=45%  Similarity=0.798  Sum_probs=22.7

Q ss_pred             CCchHHHHHHhcCChHHHHHHHhcccCCC
Q 038432          363 KGRTPLHIAASKGHEECVLVLLKHASNVH  391 (602)
Q Consensus       363 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~  391 (602)
                      .|.||+|+|+..++.++++.|++.|.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            36788888888888888888888877654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PRK11832 putative DNA-binding transcriptional regulator; Provisional

Probab=96.84  E-value=0.019  Score=52.08  Aligned_cols=95  Identities=15%  Similarity=0.160  Sum_probs=75.4

Q ss_pred             HHHHHHhccceecCCCCeE-EccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehhhhhcCCCceeEEEEcce
Q 038432          196 IVLLVAKMKAEYIPPREDV-IMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTL  274 (602)
Q Consensus       196 l~~l~~~~~~~~~~~g~~i-~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~~ll~~~~~~~tv~a~~~  274 (602)
                      .+.+....++..+.+|..+ +...+.....|++.+|.|.+.. .+  +..+.....-..||-...+.+....+..++.+.
T Consensus        15 ~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr-~d--~ll~~t~~aP~IlGl~~~~~~~~~~~~l~ae~~   91 (207)
T PRK11832         15 DKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRR-EE--NVLIGITQAPYIMGLADGLMKNDIPYKLISEGN   91 (207)
T ss_pred             HHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEe-cC--CeEEEeccCCeEeecccccCCCCceEEEEEcCc
Confidence            3455556667889999997 5554555679999999999953 22  377778888889998877776666688999999


Q ss_pred             eEEEEeeHHHHHHHHHhCh
Q 038432          275 SQLLRLKTSALIEAMQSKQ  293 (602)
Q Consensus       275 ~~l~~l~~~~~~~~l~~~~  293 (602)
                      |....++.+++.++++++.
T Consensus        92 c~~~~i~~~~~~~iie~~~  110 (207)
T PRK11832         92 CTGYHLPAKQTITLIEQNQ  110 (207)
T ss_pred             cEEEEeeHHHHHHHHHHhc
Confidence            9999999999999998776

>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement

Probab=96.76  E-value=0.0015  Score=47.55  Aligned_cols=35  Identities=51%  Similarity=0.744  Sum_probs=30.3

Q ss_pred             ceeEEEecCCCcccccccccccCeEEeccccHHHHHhhC
Q 038432          564 CQRVSIYRGHPLVRKQACCMEAGRLIKLPNSLEELKKIA  602 (602)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  602 (602)
                      +.++.++.+||..+    +..+|+++++|+|++||.++|
T Consensus         1 ~~RVtI~~~~~~~~----~~~~GKvi~lP~SleeLl~ia   35 (69)
T PF11834_consen    1 PKRVTIFPNHPPEK----GRRAGKVIWLPDSLEELLKIA   35 (69)
T ss_pred             CcEEEEecCCCCcc----cCcCCEEEEcCccHHHHHHHH
Confidence            35789999999877    447899999999999999986

Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].

>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]

Probab=96.56  E-value=0.00025  Score=66.94  Aligned_cols=52  Identities=27%  Similarity=0.560  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038432           56 RYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTN  107 (602)
Q Consensus        56 ~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~  107 (602)
                      ++..||||+.+-+||+|||-.+|.|..+++|+++..++|+-+-..++..+..
T Consensus        80 kF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gE  131 (350)
T KOG4404|consen   80 KFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGE  131 (350)
T ss_pred             ccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHH
Confidence            4667999999999999999999999999999999999999888888877764

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.50  E-value=0.003  Score=63.14  Aligned_cols=64  Identities=23%  Similarity=0.300  Sum_probs=55.0

Q ss_pred             CcHHHHHHHHhcCCCCCCC------CCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCC
Q 038432          342 GNAAFLDELLKARLDPDIG------DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGN  415 (602)
Q Consensus       342 g~~~~~~~Ll~~g~~~n~~------d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~  415 (602)
                      .-.+.++.|.+++.+.|..      +..-.|+||+|+..|..++|.+||+.|+|+..+|                 ..|.
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd-----------------~~Gr  464 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKD-----------------GAGR  464 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcc-----------------cCCC
Confidence            3467888899888777653      4446799999999999999999999999999998                 9999


Q ss_pred             cHHHHHH
Q 038432          416 TALWEAI  422 (602)
Q Consensus       416 tpLh~A~  422 (602)
                      ||..++.
T Consensus       465 tpy~ls~  471 (591)
T KOG2505|consen  465 TPYSLSA  471 (591)
T ss_pred             Ccccccc
Confidence            9999886

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.45  E-value=0.019  Score=51.58  Aligned_cols=90  Identities=22%  Similarity=0.279  Sum_probs=59.6

Q ss_pred             CCcHHHHHHHcCChhHHHHHHhcCC----CCCC-CCcchhHHHH--HhcCCHHHHHHHHHcC-CCCCC---CCCCCcCHH
Q 038432          414 GNTALWEAISSKHHSIFRILYHCTA----ISDP-YTAGDLLCTA--EKRNDMSVMEELVKYG-LNVDS---KDRHGRTAI  482 (602)
Q Consensus       414 g~tpLh~A~~~~~~~~~~~Ll~~g~----~~~~-~~g~t~L~~A--~~~~~~~~~~~Ll~~g-a~~n~---~d~~g~TpL  482 (602)
                      -.+++.+|+.++..+++.+|++.-.    |+-. ..+.--+.++  ....+..++++.+++| +++|.   +-+.|.|-|
T Consensus       179 A~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtML  258 (284)
T PF06128_consen  179 AHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTML  258 (284)
T ss_pred             HHHHHHHHhcccHHHHHHHHHhhcceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHH
Confidence            3466666666666666666665321    1110 1111122222  2334677899999988 67774   356899999


Q ss_pred             HHHHHcCcHHHHHHHHHCCCC
Q 038432          483 EIAMAENNVEMVNFLVMNGSD  503 (602)
Q Consensus       483 h~A~~~~~~~iv~~Ll~~ga~  503 (602)
                      .-|.+.++.+++.+||++||-
T Consensus       259 DNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  259 DNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             HhHHhcCcHHHHHHHHHcCcc
Confidence            999999999999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle

Probab=96.33  E-value=0.27  Score=41.75  Aligned_cols=104  Identities=10%  Similarity=0.011  Sum_probs=83.4

Q ss_pred             cCCHHHHHHHHHh-ccceecCCCCeEEccCC-CCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehhhhhcC-----
Q 038432          190 DVSKEIIVLLVAK-MKAEYIPPREDVIMQNE-APDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCC-----  262 (602)
Q Consensus       190 ~~s~~~l~~l~~~-~~~~~~~~g~~i~~~g~-~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~~ll~~-----  262 (602)
                      +.|....++++.+ .+.....+|+.-..||. +.+.+-++++|.+.|...    ...+-.+.+.+|.........     
T Consensus        14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~----g~fLH~I~p~qFlDSPEW~s~~~s~~   89 (153)
T PF04831_consen   14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCD----GRFLHYIYPYQFLDSPEWESLRPSED   89 (153)
T ss_pred             CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEEC----CEeeEeecccccccChhhhccccCCC
Confidence            5688888899888 56688999999888885 567799999999999863    256777788888776544433     


Q ss_pred             CCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHH
Q 038432          263 RPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNV  297 (602)
Q Consensus       263 ~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~  297 (602)
                      .....|+.|.+.|..+..+++.+.-++...|-...
T Consensus        90 ~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~  124 (153)
T PF04831_consen   90 DKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAA  124 (153)
T ss_pred             CeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHH
Confidence            33468999999999999999999999999886553

It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.20  E-value=0.049  Score=47.70  Aligned_cols=137  Identities=15%  Similarity=0.181  Sum_probs=90.6

Q ss_pred             chhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhh
Q 038432          332 SVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLD  411 (602)
Q Consensus       332 ~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~  411 (602)
                      +..+..|+..+...+++..-+...+-   -...++.+-.||+..+.|+|+|.-+.   ....                  
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI~qn---L~i~------------------  102 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWIGQN---LHIY------------------  102 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHHhhc---cCCC------------------
Confidence            45677899999999998887653211   23567889999999999999999443   2221                  


Q ss_pred             ccCCcHHHHHHHcCChhHHH----HHHhcCCCCCCC----CcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHH
Q 038432          412 MNGNTALWEAISSKHHSIFR----ILYHCTAISDPY----TAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIE  483 (602)
Q Consensus       412 ~~g~tpLh~A~~~~~~~~~~----~Ll~~g~~~~~~----~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh  483 (602)
                       +-.+-+-.|....+.++..    ++.++.......    --..-|..|+..|-...+...+++|.+++.      ++|.
T Consensus       103 -~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls  175 (192)
T PF03158_consen  103 -NPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLS  175 (192)
T ss_pred             -CchhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHH
Confidence             1224455666666655421    122221111000    001246788899999888888899887753      7899


Q ss_pred             HHHHcCcHHHHHHHHH
Q 038432          484 IAMAENNVEMVNFLVM  499 (602)
Q Consensus       484 ~A~~~~~~~iv~~Ll~  499 (602)
                      .|+..++..|+.+++.
T Consensus       176 ~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  176 QAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHhhHHHHHHHhhc
Confidence            9999999988888764

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.40  E-value=0.091  Score=46.06  Aligned_cols=138  Identities=15%  Similarity=0.047  Sum_probs=97.4

Q ss_pred             chHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCCCC
Q 038432          365 RTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYT  444 (602)
Q Consensus       365 ~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~  444 (602)
                      +-.|..|+..+...+.+..-+...+-  .                  ..+++-+-.||+..+.|+|+|.   |-+....+
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~~~--~------------------~~~q~LFElAC~~qkydiV~WI---~qnL~i~~  103 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLENE--R------------------YLNQELFELACEEQKYDIVKWI---GQNLHIYN  103 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhhcc--h------------------hHHHHHHHHHHHHccccHHHHH---hhccCCCC
Confidence            34577889999999998876654322  1                  3456788999999999999999   33444455


Q ss_pred             cchhHHHHHhcCCHHHH----HHHHHcCCCCCCCCC--CCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHH
Q 038432          445 AGDLLCTAEKRNDMSVM----EELVKYGLNVDSKDR--HGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLN  518 (602)
Q Consensus       445 g~t~L~~A~~~~~~~~~----~~Ll~~ga~~n~~d~--~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a  518 (602)
                      -.+..-.|....+.+..    .++.++...-+..|.  --..-|..|+..|-...+.-.+++|.+++.      +.|..|
T Consensus       104 ~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~A  177 (192)
T PF03158_consen  104 PEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQA  177 (192)
T ss_pred             chhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHH
Confidence            56677788888887652    222333221111110  111357899999999999999999999973      899999


Q ss_pred             HHHHHHhhhceee
Q 038432          519 DMLQKREIGHRIT  531 (602)
Q Consensus       519 ~~~~~~~~~~~l~  531 (602)
                      +..+++.+..+.+
T Consensus       178 v~ynhRkIL~yfi  190 (192)
T PF03158_consen  178 VKYNHRKILDYFI  190 (192)
T ss_pred             HHhhHHHHHHHhh
Confidence            9999998876654

These proteins may be involved in promoting survival of infected macrophages [].

>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]

Probab=93.43  E-value=0.013  Score=61.33  Aligned_cols=48  Identities=27%  Similarity=0.540  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHhhcccCccccccchhH--------HHHHHHHHHHHHHHHHHH
Q 038432           55 IRYISAMYWSITTMTTVGYGDLHAVNTVEM--------IFIIFYMLFNLGLTAYLI  102 (602)
Q Consensus        55 ~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~--------~~~~~~~~~g~~~~~~~i  102 (602)
                      -.|+.|+|++++++||+||||+.|.+...+        .+..++.++|...++.+.
T Consensus       241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  296 (433)
T KOG1418|consen  241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL  296 (433)
T ss_pred             eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence            468899999999999999999999998755        678888888888887776

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=92.31  E-value=0.78  Score=41.65  Aligned_cols=44  Identities=16%  Similarity=0.224  Sum_probs=27.7

Q ss_pred             ChhHHHHHHhcC-CCCCC-----CCcchhHHHHHhcCCHHHHHHHHHcCC
Q 038432          426 HHSIFRILYHCT-AISDP-----YTAGDLLCTAEKRNDMSVMEELVKYGL  469 (602)
Q Consensus       426 ~~~~~~~Ll~~g-~~~~~-----~~g~t~L~~A~~~~~~~~~~~Ll~~ga  469 (602)
                      +..+++..+++| +++|.     ..|.|-|.-|.++++.+++..|+++||
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            445566666665 34443     566666777777777777777777766

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=92.21  E-value=0.24  Score=51.75  Aligned_cols=89  Identities=13%  Similarity=0.148  Sum_probs=67.1

Q ss_pred             hhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehhhh
Q 038432          180 HTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGA  259 (602)
Q Consensus       180 ~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~~l  259 (602)
                      ..|.+...|+++-...++.++...+...++...++|+.||.+.+.|++++|.|-|...         .+-+-.+||-.  
T Consensus        37 ~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~gq---------i~mp~~~fgkr--  105 (1283)
T KOG3542|consen   37 EQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEGQ---------IYMPYGCFGKR--  105 (1283)
T ss_pred             HHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeecc---------eecCccccccc--
Confidence            4667788899999999999999999999999999999999999999999999987641         22333345533  


Q ss_pred             hcCCCceeEEEEcceeEEEEe
Q 038432          260 LCCRPQIYTYRTKTLSQLLRL  280 (602)
Q Consensus       260 l~~~~~~~tv~a~~~~~l~~l  280 (602)
                       +|..+....-....++..++
T Consensus       106 -~g~~r~~nclllq~semivi  125 (1283)
T KOG3542|consen  106 -TGQNRTHNCLLLQESEMIVI  125 (1283)
T ss_pred             -cccccccceeeecccceeee
Confidence             24445555555555665555

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=88.52  E-value=0.78  Score=34.60  Aligned_cols=46  Identities=22%  Similarity=0.313  Sum_probs=25.4

Q ss_pred             hHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHC
Q 038432          448 LLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMN  500 (602)
Q Consensus       448 ~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~  500 (602)
                      .+..|+..|+.|+++.+++.+ .++      ...+..|+...+.+++++|++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            345555556666666555443 111      3356666666666666666654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory

Probab=88.11  E-value=0.59  Score=40.54  Aligned_cols=96  Identities=16%  Similarity=0.279  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCCchHHHHHHHHHHHHHHHhhcccCccccccchhHHHHHHH
Q 038432           11 VRFCDIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFY   90 (602)
Q Consensus        11 i~~~~l~~~H~~aC~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~   90 (602)
                      +++.+++.+-..+++.+.+....+   ..|-..  ..-...........++++...+++.-| ++..|++...|++.+++
T Consensus         4 vW~~il~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~s~s~Ril~~~w   77 (148)
T PF00060_consen    4 VWLLILLSILLVSLVLWLFERFSP---YEWRKN--QSSPPRRWRFSLSNSFWYTFGTLLQQG-SSIRPRSWSGRILLAFW   77 (148)
T ss_dssp             HHHHHHHHHHHHHTTGGGT-----------------------HHHHHHHHHHHCCCCCHHHH-H------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh---hhhccc--cccccccCcccHHHHHHHHHHhhcccc-ccccccchHHHHHHHHH
Confidence            455555566666666665544321   112110  111122445677788888887777633 67899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Q 038432           91 MLFNLGLTAYLIGNMTNLVVEG  112 (602)
Q Consensus        91 ~~~g~~~~~~~i~~i~~~~~~~  112 (602)
                      .+++.++.++..+.+..++...
T Consensus        78 ~l~~lil~~~Yta~L~s~Lt~~   99 (148)
T PF00060_consen   78 WLFSLILIASYTANLTSFLTVP   99 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999888654

There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....

>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]

Probab=87.76  E-value=0.09  Score=53.33  Aligned_cols=42  Identities=26%  Similarity=0.542  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHH
Q 038432           57 YISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLT   98 (602)
Q Consensus        57 Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~   98 (602)
                      .+.|+|+.++|++||||||..|--..-+++.++++.+..++.
T Consensus       218 lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~i  259 (1087)
T KOG3193|consen  218 LFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLI  259 (1087)
T ss_pred             eeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhcc
Confidence            356899999999999999999976666666555554444433

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=87.33  E-value=0.92  Score=34.22  Aligned_cols=47  Identities=28%  Similarity=0.231  Sum_probs=27.0

Q ss_pred             hHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhc
Q 038432          366 TPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHC  436 (602)
Q Consensus       366 t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~  436 (602)
                      ..+..|+..|+.|+++.+++.+ .++                       ...+..|+...+-+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~-----------------------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD-----------------------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH-----------------------HHHHHHHHHHhhHHHHHHHHHh
Confidence            3456666666666666666543 111                       1346666666666666666654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PLN03223 Polycystin cation channel protein; Provisional

Probab=81.41  E-value=20  Score=41.90  Aligned_cols=28  Identities=14%  Similarity=0.222  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038432           85 IFIIFYMLFNLGLTAYLIGNMTNLVVEG  112 (602)
Q Consensus        85 ~~~~~~~~~g~~~~~~~i~~i~~~~~~~  112 (602)
                      .|..+++++.+++.-++++.+..-+...
T Consensus      1398 YFfSFILLV~FILLNMFIAII~DSFsEV 1425 (1634)
T PLN03223       1398 YFYSYNIFVFMILFNFLLAIICDAFGEV 1425 (1634)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555666666677777777777666544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	602
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-11
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		5e-11
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		6e-11
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-10
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		1e-10
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-10
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-10
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-10
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-10
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		4e-10
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-10
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		8e-10
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-09
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-09
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-09
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		4e-04
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-09
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-09
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-08
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-08
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		4e-04
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-08
2xee_A	157	Structural Determinants For Improved Thermal Stabil		4e-04
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-08
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-08
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-07
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		3e-07
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-07
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		4e-07
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		5e-07
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		5e-07
1uoh_A	226	Human Gankyrin Length = 226		7e-07
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		8e-07
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		9e-07
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-06
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		4e-06
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		3e-06
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		4e-06
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-05
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		6e-06
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		1e-05
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		1e-05
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		2e-05
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		3e-05
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		4e-05
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-05
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		4e-05
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		4e-05
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		8e-05
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		8e-05
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		6e-04
3ouf_A	97	Structure Of A K+ Selective Nak Mutant Length = 97		1e-04
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		2e-04
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		2e-04
4h33_A	137	Crystal Structure Of A Voltage-gated K+ Channel Por		2e-04
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		3e-04
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		3e-04
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		3e-04
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		3e-04
3tet_A	97	Crystal Structure Of Nak2k Channel Y66f Mutant Leng		4e-04
3t4d_A	97	Crystal Structure Of Nak2k Channel Y55f Mutant Leng		4e-04
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		4e-04
3tcu_A	97	Crystal Structure Of Nak2k Channel D68e Mutant Leng		5e-04
3t4z_A	97	Crystal Structure Of Nak2k Channel Y55w Mutant Leng		5e-04
3t1c_A	97	Crystal Structure Of Nak Channel D66y Mutant Length		5e-04
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		5e-04
3etq_A	204	X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2		6e-04
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		6e-04

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 19/170 (11%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
           ++   LL  A  G    +  L+    D +  D +G TPLH+AA  GH E V VLLKH ++
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDL- 448
           V+ R                 D +G T L  A  + H  I  +L    A  +   A  L 
Sbjct: 73  VNAR-----------------DTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLT 115
Query: 449 -LCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
            L  A  R  + ++E L+K+G +V+++D+ G+TA +I++   N ++   L
Sbjct: 116 PLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 21/171 (12%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
           ++   LL  A  G    +  L+    D +  D  G+TPLH+AA KGH E V VLLKH ++
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTA---ISDPYTAG 446
           V+  D +                 G+T L  A    H  I  +L    A    +D Y   
Sbjct: 73  VNAADKM-----------------GDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFT 115
Query: 447 DLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
            L   A+    + ++E L+KYG +V+++D+ G+TA +I++   N ++   L
Sbjct: 116 PLHLAADA-GHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 19/170 (11%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
           ++   LL  A  G    +  L+    D +  D+ G TPLH+AA  GH E V VLLK+ ++
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRIL--YHCTAISDPYTAGD 447
           V+                  LD +G+T L  A    H  I  +L  Y     +D      
Sbjct: 73  VN-----------------ALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGST 115
Query: 448 LLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
            L  A     + ++E L+KYG +V+++D+ G+TA +I++   N ++   L
Sbjct: 116 PLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 57/213 (26%), Positives = 89/213 (41%), Gaps = 65/213 (30%)
Query: 285 LIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNA 344
           L+EA ++ Q+D V IL           D+N  D +  +            L   A TG+ 
Sbjct: 18  LLEAARAGQDDEVRILM------ANGADVNATDWLGHT-----------PLHLAAKTGHL 60
Query: 345 AFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSY 404
             ++ LLK   D +  D+ G TPLH+AA  GH E V VLLKH ++V+ +DY         
Sbjct: 61  EIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDY--------- 111
Query: 405 DIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEEL 464
                    G T L  A    H                               + ++E L
Sbjct: 112 --------EGFTPLHLAAYDGH-------------------------------LEIVEVL 132
Query: 465 VKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
           +KYG +V+++D+ G+TA +I++   N ++   L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 19/170 (11%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
           ++   LL  A  G    +  L+    D +  D+ G TPLH+AA+ GH E V VLLKH ++
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILY-HCTAISDPYTAGDL 448
           V+                  +D+ G+T L  A    H  I  +L  H   ++   T GD 
Sbjct: 73  VN-----------------AIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDT 115
Query: 449 -LCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
            L  A     + ++E L+K+G +V+++D+ G+TA +I++   N ++   L
Sbjct: 116 PLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 25/172 (14%)
Query: 335 LLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
           L+  A  GN   + +LL+   DP+  DS GRTPLH AA  GH+E V +LL   ++ + + 
Sbjct: 8   LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK- 66
Query: 395 YIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDL-----L 449
                           D +G T L  A  + H  I ++L    A  DP  A D      L
Sbjct: 67  ----------------DSDGRTPLHYAAENGHKEIVKLLLSKGA--DP-NAKDSDGRTPL 107
Query: 450 CTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNG 501
             A +     +++ L+  G + ++ D  GRT +++A    N E+V  L   G
Sbjct: 108 HYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 25/172 (14%)
Query: 335 LLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
           L+  A  GN   + +L++   D +  DS GRTPLH AA +GH+E V +L+   ++V+ + 
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK- 66
Query: 395 YIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTA-----ISDPYTAGDLL 449
                           D +G T L  A    H  I ++L    A      SD  T    L
Sbjct: 67  ----------------DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTP---L 107
Query: 450 CTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNG 501
             A K     +++ L+  G +V++ D  GRT +++A    N E+V  L   G
Sbjct: 108 HYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 19/170 (11%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
           ++   LL  A  G    +  L+    D +  D+ G TPLH+AAS GH E V VLLK+ ++
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPY--TAGD 447
           V+                   D+ G T L  A ++ H  I  +L    A  + Y      
Sbjct: 73  VNAS-----------------DLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHT 115
Query: 448 LLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
            L  A K   + ++E L+K+G +V+++D+ G+TA +I++   N ++   L
Sbjct: 116 PLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 19/170 (11%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
           ++   LL  A  G    +  L+    D +  D+ G TPLH+AA+ GH E V VLLKH ++
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILY-HCTAISDPYTAGDL 448
           V+                  +D+ G+T L  A    H  I  +L  H   ++   T GD 
Sbjct: 73  VN-----------------AIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDT 115
Query: 449 -LCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
            L  A     + ++E L+K+G +V+++D+ G+TA +I++   N ++   L
Sbjct: 116 PLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 19/170 (11%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
           ++   LL  A  G    +  L+    D +  D  GRTPLH+AA+ GH E V VLL++ ++
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRIL--YHCTAISDPYTAGD 447
           V+                  +D NG T L  A S  H  I  +L  Y     +   T   
Sbjct: 61  VN-----------------AVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGIT 103
Query: 448 LLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
            L  A     + ++E L+K+G +V+++D+ G+TA +I++   N ++   L
Sbjct: 104 PLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 25/172 (14%)
Query: 335 LLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
           L+  A  GN   + +L++   D +  DS GRTPLH AA  GH+E V +L+   ++V+ + 
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK- 66
Query: 395 YIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTA-----ISDPYTAGDLL 449
                           D +G T L  A  + H  + ++L    A      SD  T    L
Sbjct: 67  ----------------DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTP---L 107
Query: 450 CTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNG 501
             A +     V++ L+  G +V++ D  GRT +++A    N E+V  L   G
Sbjct: 108 HHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 19/166 (11%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
           ++   LL  A  G    +  L+    D +  D+ G TPLH+AA  GH E V VLLKH ++
Sbjct: 13  DLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPY--TAGD 447
           V                    D+ G T L  A  + H  I  +L    A  + +  T   
Sbjct: 73  VDAA-----------------DVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGST 115
Query: 448 LLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEM 493
            L  A     + ++E L+KYG +V+++D+ G+TA +I++   N ++
Sbjct: 116 PLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDL 161

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 25/172 (14%)
Query: 335 LLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
           L+  A  GN   + +LL+   D +  DS G+TPLH+AA  GH+E V +LL   ++ + + 
Sbjct: 8   LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK- 66
Query: 395 YIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDL-----L 449
                           D +G T L  A  + H  + ++L    A  DP  A D      L
Sbjct: 67  ----------------DSDGKTPLHLAAENGHKEVVKLLLSQGA--DP-NAKDSDGKTPL 107
Query: 450 CTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNG 501
             A +     V++ L+  G + ++ D  GRT +++A    N E+V  L   G
Sbjct: 108 HLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/213 (25%), Positives = 87/213 (40%), Gaps = 65/213 (30%)
Query: 285 LIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNA 344
           L+EA ++ Q+D V IL           D+N  D    +            L  V + G+ 
Sbjct: 18  LLEAARAGQDDEVRILM------ANGADVNANDWFGIT-----------PLHLVVNNGHL 60
Query: 345 AFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSY 404
             ++ LLK   D +  D  G TPLH+AA +GH E V VLLK+ ++V+  DY         
Sbjct: 61  EIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDY--------- 111
Query: 405 DIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEEL 464
                    G T L  A    H                               + ++E L
Sbjct: 112 --------QGYTPLHLAAEDGH-------------------------------LEIVEVL 132
Query: 465 VKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
           +KYG +V+++D+ G+TA +I++   N ++   L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 25/173 (14%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
           ++   LL  A  G    +  L+    D +  D  G TPLH+AA +GH E V VLLK  ++
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTA-----ISDPYT 444
           V+ +                 D +G T L  A    H  I  +L    A       D YT
Sbjct: 73  VNAK-----------------DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYT 115
Query: 445 AGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
               L  A +   + ++E L+K G +V+++D+ G+TA +I++   N ++   L
Sbjct: 116 P---LHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 16/119 (13%)
Query: 441 DPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMN 500
           D YT    L  A +   + ++E L+K G +V++KD+ G T + +A  E ++E+V  L+  
Sbjct: 46  DGYTP---LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 102
Query: 501 GSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEGKS 559
           G+DV   +K  ++  +    L  RE GH   V        EVLLK    ++ + K GK+
Sbjct: 103 GADVNAKDKDGYTPLH----LAARE-GHLEIV--------EVLLKAGADVNAQDKFGKT 148

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 19/170 (11%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
           ++   LL  A  G    +  L+    D +  D+ G TPLH+AA  GH E V VLLKH ++
Sbjct: 13  DLGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDL- 448
           V   D  +F Y               T L  A    H  I  +L    A  +   +  + 
Sbjct: 73  VDASD--VFGY---------------TPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMT 115
Query: 449 -LCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
            L  A K   + ++E L+K+G +V+++D+ G+TA +I++   N ++   L
Sbjct: 116 PLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 19/170 (11%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
           ++   LL  A  G    +  L+    D +  D  G TPLH+AA  GH E V VLLK+ ++
Sbjct: 13  DLGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDL- 448
           V+           +YD +      G+T L  A    H  I  +L    A  +      + 
Sbjct: 73  VN-----------AYDTL------GSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGIT 115
Query: 449 -LCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
            L  A  R  + ++E L+KYG +V+++D+ G+TA +I++   N ++   L
Sbjct: 116 PLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 21/171 (12%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
           ++   LL  A  G    +  L+    D +  D  G TPLH+AA  GH E V VLLK+ ++
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTA---ISDPYTAG 446
           V+ +D +                 G T L  A    H  I  +L    A    SD +   
Sbjct: 73  VNAKDSL-----------------GVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFT 115
Query: 447 DLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
            L   A KR  + ++E L+K G +V+++D+ G+TA +I++   N ++   L
Sbjct: 116 PLHLAA-KRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 25/173 (14%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
           ++   LL  A  G    +  L+    D +  D  G TPLH+AA +GH E V VLLK  ++
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTA-----ISDPYT 444
           V+ +                 D +G T L  A    H  I  +L    A       D YT
Sbjct: 61  VNAK-----------------DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYT 103
Query: 445 AGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
               L  A +   + ++E L+K G +V+++D+ G+T  ++A+ E + ++   L
Sbjct: 104 P---LHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 16/119 (13%)
Query: 441 DPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMN 500
           D YT    L  A +   + ++E L+K G +V++KD+ G T + +A  E ++E+V  L+  
Sbjct: 34  DGYTP---LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 501 GSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEGKS 559
           G+DV   +K  ++  +    L  RE GH   V        EVLLK    ++ + K GK+
Sbjct: 91  GADVNAKDKDGYTPLH----LAARE-GHLEIV--------EVLLKAGADVNAQDKFGKT 136

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 25/173 (14%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
           ++   LL  A  G    +  L+    D +  D  G TPLH+AA +GH E V VLLK  ++
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTA-----ISDPYT 444
           V+ +                 D +G T L  A    H  I  +L    A       D YT
Sbjct: 61  VNAK-----------------DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYT 103
Query: 445 AGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
               L  A +   + ++E L+K G +V+++D+ G+T  ++A+   N ++   L
Sbjct: 104 P---LHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 16/119 (13%)
Query: 441 DPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMN 500
           D YT    L  A +   + ++E L+K G +V++KD+ G T + +A  E ++E+V  L+  
Sbjct: 34  DGYTP---LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 501 GSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEGKS 559
           G+DV   +K  ++  +    L  RE GH   V        EVLLK    ++ + K GK+
Sbjct: 91  GADVNAKDKDGYTPLH----LAARE-GHLEIV--------EVLLKAGADVNAQDKFGKT 136

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 19/141 (13%)
Query: 364 GRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAIS 423
           GRTPLH+AA  GH E V +LL+  ++V+ +                 D NG T L  A  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAK-----------------DKNGRTPLHLAAR 44
Query: 424 SKHHSIFRILYHCTAISDPYTAGDL--LCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTA 481
           + H  + ++L    A  +         L  A +   + V++ L++ G +V++KD++GRT 
Sbjct: 45  NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 104
Query: 482 IEIAMAENNVEMVNFLVMNGS 502
           + +A    ++E+V  L+  G+
Sbjct: 105 LHLAARNGHLEVVKLLLEAGA 125

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 18/198 (9%)
Query: 338 VASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLL-KHASNVHL--RD 394
            A  G+   +  LL+   +P++  + G TPLHIAA +GH E VL LL K AS   +  + 
Sbjct: 87  AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG 146
Query: 395 YIIFMYNLSYDIIILLDM-------------NGNTALWEAISSKHHSIFRILYH--CTAI 439
           +        Y  + + ++             NG T L  A+   +  I ++L     +  
Sbjct: 147 FTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH 206
Query: 440 SDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVM 499
           S  +     L  A K+N + V   L++YG + +++   G T + +A  E + EMV  L+ 
Sbjct: 207 SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS 266
Query: 500 NGSDVVGANKCEFSSTNL 517
             ++    NK   +  +L
Sbjct: 267 KQANGNLGNKSGLTPLHL 284

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/213 (26%), Positives = 87/213 (40%), Gaps = 65/213 (30%)
Query: 285 LIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNA 344
           L+EA  + Q+D V IL             N  D+ A       D N    L   A+ G  
Sbjct: 10  LLEAAAAGQDDEVRILM-----------ANGADVNAT------DDNGLTPLHLAAANGQL 52
Query: 345 AFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSY 404
             ++ LLK   D +  DS G TPLH+AA  GH E V VLLKH ++V+           +Y
Sbjct: 53  EIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVN-----------AY 101
Query: 405 DIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEEL 464
           D           A W  +            H  A+S                 + ++E L
Sbjct: 102 D----------RAGWTPL------------HLAALS---------------GQLEIVEVL 124
Query: 465 VKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
           +K+G +V+++D  G TA +I++ +   ++   L
Sbjct: 125 LKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 80/187 (42%), Gaps = 21/187 (11%)
Query: 328 DPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHA 387
           D +    L    S G+   ++ LL+  +  +  D  G +PLHIAAS G +E V  LL   
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKG 96
Query: 388 SNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTA---ISDPYT 444
           ++V+                  ++ NG T L  A S   H I  +L    A     D Y 
Sbjct: 97  AHVN-----------------AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD 139
Query: 445 AGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
           A  +   A K N + ++  L+ Y  + + +D  G T + +A  E  VE   FLV  G+ +
Sbjct: 140 ATAMHRAAAKGN-LKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198
Query: 505 VGANKCE 511
              NK E
Sbjct: 199 YIENKEE 205

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 19/170 (11%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
           ++   LL  A  G    +  L+    D +  D  G TPLH+AA  GH E V VLLK+ ++
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAI--SDPYTAGD 447
           V+  D +                 G T L  A    H  +  +L    A   ++ +    
Sbjct: 73  VNADDSL-----------------GVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFT 115
Query: 448 LLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
            L  A     + ++E L+K+G +V+++D+ G+TA +I++   N ++   L
Sbjct: 116 PLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 80/187 (42%), Gaps = 21/187 (11%)
Query: 328 DPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHA 387
           D +    L    S G+   ++ LL+  +  +  D  G +PLHIAAS G +E V  LL   
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKG 96
Query: 388 SNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTA---ISDPYT 444
           ++V+                  ++ NG T L  A S   H I  +L    A     D Y 
Sbjct: 97  AHVN-----------------AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD 139
Query: 445 AGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
           A  +   A K N + ++  L+ Y  + + +D  G T + +A  E  VE   FLV  G+ +
Sbjct: 140 ATAMHRAAAKGN-LKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198
Query: 505 VGANKCE 511
              NK E
Sbjct: 199 YIENKEE 205

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 48/168 (28%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
           ++   LL     G    +  L+    D +  D  G TPLH+AA +GH E V VLLKH ++
Sbjct: 13  DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLL 449
           V+ R                 D+ G T L  A +  H                       
Sbjct: 73  VNAR-----------------DIWGRTPLHLAATVGH----------------------- 92
Query: 450 CTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
                   + ++E L++YG +V+++D+ G+TA +I++   N ++   L
Sbjct: 93  --------LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 22/175 (12%)
Query: 327 GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKH 386
           GD N S  L      G+ + + +L+K   DP + D +G + +H+AA  GH   V  L+  
Sbjct: 73  GDLN-STPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK 131
Query: 387 ASNVHLRDYIIFMYNLSYDIIILLDMNGNTAL-WEAISSKHHSIFRILYH---CTAISDP 442
             +V                  ++D NG T L W A  +      R+L        + D 
Sbjct: 132 GQDVD-----------------MMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDK 174
Query: 443 YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
           Y     L  A    + +V+  L++ G NVD+++  G +A+++A    NV M+N L
Sbjct: 175 YHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 86/206 (41%), Gaps = 21/206 (10%)
Query: 309 KLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPL 368
           KL++L    L  +S     D +    L    S G+   ++ LL+  +  +  D  G +PL
Sbjct: 18  KLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPL 77
Query: 369 HIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHS 428
           HIAAS G +E V  LL   + V+                  ++ NG T L  A S   H 
Sbjct: 78  HIAASAGRDEIVKALLGKGAQVN-----------------AVNQNGCTPLHYAASKNRHE 120
Query: 429 IFRILYHCTA---ISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIA 485
           I  +L    A     D Y A  +   A K N + ++  L+ Y  + + +D  G T + +A
Sbjct: 121 IAVMLLEGGANPDAKDHYEATAMHRAAAKGN-LKMIHILLYYKASTNIQDTEGNTPLHLA 179
Query: 486 MAENNVEMVNFLVMNGSDVVGANKCE 511
             E  VE    LV  G+ +   NK E
Sbjct: 180 CDEERVEEAKLLVSQGASIYIENKEE 205

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 25/173 (14%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
           ++   LL  A  G    +  L+    D +  D+ G TPLH+AA  GH E V VLLK+ ++
Sbjct: 13  DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDL- 448
           V+  D+                  G T L  A    H  I  +L    A      A D+ 
Sbjct: 73  VNAVDHA-----------------GMTPLRLAALFGHLEIVEVLLKNGA---DVNANDME 112
Query: 449 ----LCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
               L  A     + ++E L+K G +V+++D+ G+TA +I++   N ++   L
Sbjct: 113 GHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 86/206 (41%), Gaps = 21/206 (10%)
Query: 309 KLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPL 368
           KL++L    L  +S     D +    L    S G+   ++ LL+  +  +  D  G +PL
Sbjct: 19  KLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPL 78
Query: 369 HIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHS 428
           HIAAS G +E V  LL   + V+                  ++ NG T L  A S   H 
Sbjct: 79  HIAASAGRDEIVKALLGKGAQVN-----------------AVNQNGCTPLHYAASKNRHE 121
Query: 429 IFRILYHCTA---ISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIA 485
           I  +L    A     D Y A  +   A K N + ++  L+ Y  + + +D  G T + +A
Sbjct: 122 IAVMLLEGGANPDAKDHYEATAMHRAAAKGN-LKMIHILLYYKASTNIQDTEGNTPLHLA 180
Query: 486 MAENNVEMVNFLVMNGSDVVGANKCE 511
             E  VE    LV  G+ +   NK E
Sbjct: 181 CDEERVEEAKLLVSQGASIYIENKEE 206

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 25/139 (17%)
Query: 285 LIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVAST-GN 343
           L+EA ++ Q+D V IL                  +A   + +   +  V  L +A+  G+
Sbjct: 18  LLEATRAGQDDEVRIL------------------MANGADVNAMDDAGVTPLHLAAKRGH 59
Query: 344 AAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLS 403
              ++ LLK   D +  DS GRTPLH+AA+ GH E V VLL++ ++V+ +D        +
Sbjct: 60  LEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDK---FGKTA 116
Query: 404 YDIIILLDMNGNTALWEAI 422
           +DI I    NGN  L E +
Sbjct: 117 FDISI---DNGNEDLAEIL 132

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 48/168 (28%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
           ++   LL     G    +  L+    D +  D  G TPLH+AA +GH E V VLLKH ++
Sbjct: 13  DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLL 449
           V+  D        S+         G T L  A +  H                       
Sbjct: 73  VNASD--------SW---------GRTPLHLAATVGH----------------------- 92
Query: 450 CTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
                   + ++E L++YG +V+++D+ G+TA +I++   N ++   L
Sbjct: 93  --------LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 48/168 (28%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
           ++   LL     G    +  L+    D +  D  G TPLH+AA +GH E V VLLKH ++
Sbjct: 13  DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLL 449
           V+                   D+ G T L  A +  H                       
Sbjct: 73  VNAS-----------------DIWGRTPLHLAATVGH----------------------- 92
Query: 450 CTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
                   + ++E L++YG +V+++D+ G+TA +I++   N ++   L
Sbjct: 93  --------LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/138 (34%), Positives = 67/138 (48%), Gaps = 23/138 (16%)
Query: 285 LIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNA 344
           L+EA ++ Q+D V IL           D+N  D       EDG       L   A  G+ 
Sbjct: 18  LLEAARAGQDDEVRILM------ANGADVNALD-------EDG----LTPLHLAAQLGHL 60
Query: 345 AFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSY 404
             ++ LLK   D +  D+ G TPLH+AA +GH E V VLLKH ++V+ +D        ++
Sbjct: 61  EIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDK---FGKTAF 117
Query: 405 DIIILLDMNGNTALWEAI 422
           DI I    NGN  L E +
Sbjct: 118 DISI---DNGNEDLAEIL 132

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 69/168 (41%), Gaps = 48/168 (28%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
           ++   LL  A  G    +  L+    D +  D  G TPLH+AA  GH E V VLLK+ ++
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLL 449
           V+  D                   G T L                H  AI          
Sbjct: 73  VNAEDNF-----------------GITPL----------------HLAAI---------- 89
Query: 450 CTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
                R  + ++E L+K+G +V+++D+ G+TA +I++   N ++   L
Sbjct: 90  -----RGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 48/168 (28%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
           ++   LL  A  G    +  L+    D +  D KG TPLH+AA   H E V VLLKH ++
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLL 449
           V+  D                  +G+T L  A    H                       
Sbjct: 73  VNAHDN-----------------DGSTPLHLAALFGH----------------------- 92
Query: 450 CTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
                   + ++E L+K+G +V+++D+ G+TA +I++   N ++   L
Sbjct: 93  --------LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 86/214 (40%), Gaps = 68/214 (31%)
Query: 285 LIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNA 344
           L+EA ++ Q+D V IL                  +A       D   +  L   A  G+ 
Sbjct: 6   LLEAARAGQDDEVRIL------------------MANGAPFTTDWLGTSPLHLAAQYGHF 47
Query: 345 AFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSY 404
           +  + LL+A +  D      RTPLH+AAS+GH   V VLLKH ++V+ +D          
Sbjct: 48  STTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKD---------- 97
Query: 405 DIIILLDMNGNTAL-WEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEE 463
               +L M   TAL W                                A + N   V+E 
Sbjct: 98  ----MLKM---TALHW--------------------------------ATEHNHQEVVEL 118
Query: 464 LVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
           L+KYG +V ++ +  +TA +I++   N ++   L
Sbjct: 119 LIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 43/165 (26%)
Query: 341 TGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMY 400
           T      + LL A  DP++ D +G TPLH+A  +G    V VL +  +  HL        
Sbjct: 52  TNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL-------- 103
Query: 401 NLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSV 460
              + I+   + NG+T L                H  +I                  + +
Sbjct: 104 ---HSILKATNYNGHTCL----------------HLASI---------------HGYLGI 129
Query: 461 MEELVKYGLNVDSKDR-HGRTAIEIAMAENNVEMVNFLVMNGSDV 504
           +E LV  G +V++++  +GRTA+ +A+   N ++V+ L+  G+DV
Sbjct: 130 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV 174

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 43/165 (26%)
Query: 341 TGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMY 400
           T      + LL A  DP++ D +G TPLH+A  +G    V VL +  +  HL        
Sbjct: 55  TNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL-------- 106
Query: 401 NLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSV 460
              + I+   + NG+T L                H  +I                  + +
Sbjct: 107 ---HSILKATNYNGHTCL----------------HLASI---------------HGYLGI 132
Query: 461 MEELVKYGLNVDSKDR-HGRTAIEIAMAENNVEMVNFLVMNGSDV 504
           +E LV  G +V++++  +GRTA+ +A+   N ++V+ L+  G+DV
Sbjct: 133 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV 177

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 63/138 (45%), Gaps = 23/138 (16%)
Query: 285 LIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNA 344
           L+EA ++ Q+D V IL           D+N  D    +            L   A  G+ 
Sbjct: 18  LLEAARAGQDDEVRILT------ANGADVNANDYWGHT-----------PLHLAAMLGHL 60
Query: 345 AFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSY 404
             ++ LLK   D +   + GRTPLH+AA   H E V VLLKH ++V+ +D        ++
Sbjct: 61  EIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDK---FGKTAF 117
Query: 405 DIIILLDMNGNTALWEAI 422
           DI I    NGN  L E +
Sbjct: 118 DISI---DNGNEDLAEIL 132

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 68/168 (40%), Gaps = 48/168 (28%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
           ++   LL  A  G    +  L     D +  D  G TPLH+AA  GH E V VLLK+ ++
Sbjct: 13  DLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLL 449
           V                    +  GNT              R   H  A +D        
Sbjct: 73  V--------------------NATGNTG-------------RTPLHLAAWAD-------- 91
Query: 450 CTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
                   + ++E L+K+G +V+++D+ G+TA +I++   N ++   L
Sbjct: 92  -------HLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 48/139 (34%)
Query: 364 GRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAIS 423
           GRTPLH+AA  GH E V +LL+  ++V+ +D                  NG T L  A  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKD-----------------KNGRTPLHLAAR 44
Query: 424 SKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIE 483
           + H                               + V++ L++ G +V++KD++GRT + 
Sbjct: 45  NGH-------------------------------LEVVKLLLEAGADVNAKDKNGRTPLH 73
Query: 484 IAMAENNVEMVNFLVMNGS 502
           +A    ++E+V  L+  G+
Sbjct: 74  LAARNGHLEVVKLLLEAGA 92

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 80/188 (42%), Gaps = 54/188 (28%)
Query: 358 DIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLR--DYIIFMY----NLSYDIIILL- 410
           ++    G +PLH+AA  G  + + +LLKH +N   R  D  + ++       + ++  L 
Sbjct: 80  NVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLL 139
Query: 411 ---------DMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVM 461
                    D++GNT L  A S  HH +  +                             
Sbjct: 140 DSNAKPNKKDLSGNTPLIYACSGGHHELVAL----------------------------- 170
Query: 462 EELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK-------CEFSS 514
             L+++G ++++ +  G TA+  A+ E +V +V  L+++G+ V   NK       C   +
Sbjct: 171 --LLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQN 228
Query: 515 TNLNDMLQ 522
           + + ++LQ
Sbjct: 229 SKIMELLQ 236

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 56/145 (38%), Gaps = 28/145 (19%)
Query: 366 TPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWE----- 420
           +PLH A   GH  CV +LLKH + V                      NG TA W      
Sbjct: 38  SPLHEACLGGHLSCVKILLKHGAQV----------------------NGVTADWHTPLFN 75
Query: 421 -AISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGR 479
             +S     +  +L H  ++         +  A +R  +  +  L+ YG N+D K  H  
Sbjct: 76  ACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG 135
Query: 480 TAIEIAMAENNVEMVNFLVMNGSDV 504
           T + +A        V  L+ +G+DV
Sbjct: 136 TPLYLACENQQRACVKKLLESGADV 160

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 56/145 (38%), Gaps = 28/145 (19%)
Query: 366 TPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEA---- 421
           +PLH A   GH  CV +LLKH + V                      NG TA W      
Sbjct: 94  SPLHEACLGGHLSCVKILLKHGAQV----------------------NGVTADWHTPLFN 131
Query: 422 --ISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGR 479
             +S     +  +L H  ++         +  A +R  +  +  L+ YG N+D K  H  
Sbjct: 132 ACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG 191
Query: 480 TAIEIAMAENNVEMVNFLVMNGSDV 504
           T + +A        V  L+ +G+DV
Sbjct: 192 TPLYLACENQQRACVKKLLESGADV 216

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 25/139 (17%)
Query: 285 LIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVAST-GN 343
           L+EA ++ Q+D V IL                  +A   + +      +  L +A+  G+
Sbjct: 18  LLEAARAGQDDEVRIL------------------MANGADVNAKDEYGLTPLYLATAHGH 59
Query: 344 AAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLS 403
              ++ LLK   D +  D+ G TPLH+AA  GH E   VLLKH ++V+ +D        +
Sbjct: 60  LEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDK---FGKTA 116
Query: 404 YDIIILLDMNGNTALWEAI 422
           +DI I    NGN  L E +
Sbjct: 117 FDISI---GNGNEDLAEIL 132

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 48/168 (28%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
           ++   LL  A  G    +  L+    D +  D  G TPL++A + GH E V VLLK+ ++
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLL 449
           V+  D I                 G T L  A    H                       
Sbjct: 73  VNAVDAI-----------------GFTPLHLAAFIGH----------------------- 92
Query: 450 CTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
                   + + E L+K+G +V+++D+ G+TA +I++   N ++   L
Sbjct: 93  --------LEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132

>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant Length = 97

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 48 FTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGL 97
          F  T   +R I A+Y+S+ T+TTVGYGD         IF I Y+   +GL
Sbjct: 24 FYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 21/111 (18%)
Query: 323 GEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLV 382
           G +DG+      L   A  G+A  + +LL    D +     G TPLH+AA  GH E V +
Sbjct: 5   GSKDGN----TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKL 60
Query: 383 LLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRIL 433
           LL   ++V+ R                   +GNT    A  + HH I ++L
Sbjct: 61  LLAKGADVNAR-----------------SKDGNTPEHLAKKNGHHEIVKLL 94

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 338 VASTGNAAFLDEL---LKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKH-ASNVHLR 393
           +     A FLD L   L+ + D +I D++G  PLH+AA +GH   V  L+KH ASNV  R
Sbjct: 74  IHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 394 DY 395
           ++
Sbjct: 134 NH 135

>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore Module In A Closed State In Lipid Membranes, Tetragonal Crystal Form Length = 137

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 57  YISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNL 108
           Y  A++W+I T TTVGYGD+  V  +  I     MLF +     +   +TN 
Sbjct: 44  YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNF 95

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 338 VASTGNAAFLDEL---LKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKH-ASNVHLR 393
           +     A FLD L   L+ + D +I D++G  PLH+AA +GH   V  L+KH ASNV  R
Sbjct: 74  IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 394 DY 395
           ++
Sbjct: 134 NH 135

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 338 VASTGNAAFLDEL---LKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKH-ASNVHLR 393
           +     A FLD L   L+ + D +I D++G  PLH+AA +GH   V  L+KH ASNV  R
Sbjct: 74  IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 394 DY 395
           ++
Sbjct: 134 NH 135

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 338 VASTGNAAFLDEL---LKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKH-ASNVHLR 393
           +     A FLD L   L+ + D +I D++G  PLH+AA +GH   V  L+KH ASNV  R
Sbjct: 74  IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 394 DY 395
           ++
Sbjct: 134 NH 135

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 339 ASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKH-ASNVHLRDY 395
           A  G    L  LL+ + D +I D++G  PLH+AA +GH   V  L+KH ASNV  R++
Sbjct: 78  ARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNH 135

>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant Length = 97

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 48 FTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGL 97
          F  T   +R I A+Y+S+ T+TTVG+GD         IF I Y+   +GL
Sbjct: 24 FYSTVEGLRPIDALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFIGIGL 73

>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant Length = 97

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 48 FTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGL 97
          F  T   +R I A+++S+ T+TTVGYGD         IF I Y+   +GL
Sbjct: 24 FYSTVEGLRPIDALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD-YIIFMYNLSYDIII 408
           LLK   D +  D+ G TPLH+ A  GH E V VLLKH ++V+ +D +    +++S D   
Sbjct: 66  LLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISID--- 122
Query: 409 LLDMNGNTALWE 420
               NGN  L E
Sbjct: 123 ----NGNEDLAE 130

>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant Length = 97

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 48 FTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGL 97
          F  T   +R I A+Y+S+ T+TTVGYG+         IF I Y+   +GL
Sbjct: 24 FYSTVEGLRPIDALYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFIGIGL 73

>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant Length = 97

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 48 FTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGL 97
          F  T   +R I A+++S+ T+TTVGYGD         IF I Y+   +GL
Sbjct: 24 FYSTVEGLRPIDALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73

>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant Length = 97

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 48 FTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGL 97
          F  T   +R I A+Y+S+ T+TTVGYG+         IF I Y+   +GL
Sbjct: 24 FYSTVEGLRPIDALYFSVVTLTTVGYGNFSPQTDFGKIFTILYIFIGIGL 73

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 20/143 (13%)
Query: 365 RTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISS 424
           R+PLH AA  GH +   +L++  +N                 I     +  T L EA  +
Sbjct: 12  RSPLHAAAEAGHVDICHMLVQAGAN-----------------IDTCSEDQRTPLMEAAEN 54
Query: 425 KHHSIFRILYHCTAISDPYTAGDLLC--TAEKRNDMSVMEELVKYG-LNVDSKDRHGRTA 481
            H    + L    A+ DP  A    C   A K+    V++ L+  G ++V+ +D  G T 
Sbjct: 55  NHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTP 114
Query: 482 IEIAMAENNVEMVNFLVMNGSDV 504
           +  A    +V++V  L+  GSD+
Sbjct: 115 MIWATEYKHVDLVKLLLSKGSDI 137

>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C- Terminal Region From Amino Acids 443-630 Including C508n, C584s, And C601s Mutations Length = 204

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/180 (19%), Positives = 78/180 (43%), Gaps = 6/180 (3%)
Query: 111 EGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSIC 170
           + +RR  +++   +    ++  ++LP   +++I  Y   R++ +  ++  ++ +L   + 
Sbjct: 7   DSSRR--QYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLR 64
Query: 171 KSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSG 230
           + I        V  + LF +     +  ++ K+K E   P + +I +      +Y I  G
Sbjct: 65  EEIVNFNNRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG 124
Query: 231 EVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQ 290
            V ++  +  KE+    L  G  FGE+  L    +  + R  T S+L  L      E ++
Sbjct: 125 VVSVLT-KGNKEMK---LSDGSYFGEISLLTRGRRTASVRADTYSRLYSLSVDNFNEVLE 180

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 97/260 (37%), Gaps = 74/260 (28%)
Query: 335 LLTVASTGNAAFLDELLKARLDP-----DIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
           LL  A +GN    +E L A L P        D +  TPLH+AA       V +LL+H ++
Sbjct: 28  LLEAARSGN----EEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLL 449
           VH +D                   G   L  A S  H+                      
Sbjct: 84  VHAKD-----------------KGGLVPLHNACSYGHYE--------------------- 105
Query: 450 CTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509
                     V E L+K+G  V++ D    T +  A ++N VE+ + L+ +G+D    N 
Sbjct: 106 ----------VTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVN- 154
Query: 510 CEFSSTNLNDMLQKREIGHRITV----HDDNSTQNEVLLKK------LEIIDFEAKEGKS 559
           C   S    DM    E+  R+T     H       E  L K      LEII+F+  +   
Sbjct: 155 CHGKSA--VDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHE 212
Query: 560 KGGNCQRVSIYRGHPLVRKQ 579
              +C   S+   HP  RKQ
Sbjct: 213 TALHCAVASL---HP-KRKQ 228

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	602
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	4e-33
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	6e-32
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	1e-30
3ukn_A	212	Novel protein similar to vertebrate potassium VOL	8e-26
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-22
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-17
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	9e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-21
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-17
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-15
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-21
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-16
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-15
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-21
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-17
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-12
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-21
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-13
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-18
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-20
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-17
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-20
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-19
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-14
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-20
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-14
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-12
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-19
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-16
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-19
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-08
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-08
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-19
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-18
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-19
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-19
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-18
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-19
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-10
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-19
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-18
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-18
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-17
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-11
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-18
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-08
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-16
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-06
2etb_A	256	Transient receptor potential cation channel subfam	4e-18
2etb_A	256	Transient receptor potential cation channel subfam	2e-08
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	5e-18
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-18
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-12
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-17
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-08
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-05
2pnn_A	273	Transient receptor potential cation channel subfa	1e-17
2pnn_A	273	Transient receptor potential cation channel subfa	1e-12
2pnn_A	273	Transient receptor potential cation channel subfa	4e-07
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-17
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-13
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-17
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-15
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-17
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-13
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-17
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-12
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-17
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-17
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-16
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-17
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-16
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-12
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-04
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	3e-17
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	1e-12
2rfa_A	232	Transient receptor potential cation channel subfa	4e-17
2rfa_A	232	Transient receptor potential cation channel subfa	3e-13
2rfa_A	232	Transient receptor potential cation channel subfa	4e-11
2rfa_A	232	Transient receptor potential cation channel subfa	6e-07
2rfa_A	232	Transient receptor potential cation channel subfa	4e-06
2rfa_A	232	Transient receptor potential cation channel subfa	3e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-16
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-16
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-15
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-12
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-08
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	5e-16
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	4e-14
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-16
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-16
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-13
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-15
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-10
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-08
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-15
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-15
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-08
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	3e-15
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	1e-14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-15
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-12
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	3e-15
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	3e-15
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	2e-14
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-15
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-15
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-14
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-06
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	4e-15
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	4e-14
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	4e-15
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	7e-15
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-13
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-11
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	1e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-06
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-05
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	5e-14
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-13
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-04
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	1e-13
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-13
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-13
1wgp_A	137	Probable cyclic nucleotide-gated ION channel 6; cy	2e-13
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-13
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-06
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	6e-13
2z69_A	154	DNR protein; beta barrel, dimerization helix, tran	2e-12
3ouf_A	97	Potassium channel protein; ION channel, membrane,	5e-12
2q67_A	114	Potassium channel protein; inverted teepee, helix	6e-12
1lnq_A	336	MTHK channels, potassium channel related protein;	6e-12
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	8e-12
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	9e-12
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-08
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-08
3spc_A	343	Inward-rectifier K+ channel KIR2.2; PIP, membrane	2e-11
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	3e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-06
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	6e-11
4ava_A	333	Lysine acetyltransferase; allosteric regulation, d	1e-10
3kcc_A	260	Catabolite gene activator; helix-turn-helix, CAMP,	2e-10
3sya_A	340	G protein-activated inward rectifier potassium CH;	2e-10
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-10
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	9e-06
4ev0_A	216	Transcription regulator, CRP family; CAMP binding,	4e-10
1o5l_A	213	Transcriptional regulator, CRP family; TM1171, str	4e-10
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	4e-10
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	4e-09
3dkw_A	227	DNR protein; CRP-FNR, HTH, beta barrel, dimerizati	5e-10
3ryp_A	210	Catabolite gene activator; CAMP receptor protein (	5e-10
3d0s_A	227	Transcriptional regulatory protein; CAMP receptor	6e-10
3fx3_A	237	Cyclic nucleotide-binding protein; helix_TURN_heli	8e-10
3e97_A	231	Transcriptional regulator, CRP/FNR family; YP_6044	1e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-06
1zyb_A	232	Transcription regulator, CRP family; NP_813211.1,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	4e-09
2a9h_A	155	Voltage-gated potassium channel; potassium channel	9e-09
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	1e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-06
3iwz_A	230	CAP-like, catabolite activation-like protein; XCC,	1e-08
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	1e-08
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	2e-08
1p7b_A	333	Integral membrane channel and cytosolic domains; t	1e-07
2oz6_A	207	Virulence factor regulator; winged helix, helix-tu	2e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-05
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	4e-07
1xl4_A	301	Inward rectifier potassium channel; integral membr	5e-07
3la7_A	243	Global nitrogen regulator; activator, DNA-binding,	5e-07
3um7_A	309	Potassium channel subfamily K member 4; potassium	6e-07
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	8e-07
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	1e-06
2gau_A	232	Transcriptional regulator, CRP/FNR family; structu	1e-06
1ft9_A	222	Carbon monoxide oxidation system transcription reg	2e-06
2fmy_A	220	COOA, carbon monoxide oxidation system transcripti	4e-06
3e6c_C	250	CPRK, cyclic nucleotide-binding protein; CPRK, hal	5e-06
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	2e-05
2bgc_A	238	PRFA; bacterial infection, human pathogen, transcr	2e-04
3uo9_A	534	Glutaminase kidney isoform, mitochondrial; hydrola	3e-04
2byv_E	999	RAP guanine nucleotide exchange factor 4; EPAC2, C	8e-04

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160

 Score =  123 bits (311), Expect = 4e-33
 Identities = 33/155 (21%), Positives = 63/155 (40%), Gaps = 6/155 (3%)

Query: 155 SLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDV 214
           S    ++++  PK +   IC HL     ++   F+  S   +  L  + +  +  P + +
Sbjct: 2   SHMTEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLI 61

Query: 215 IMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRP--QIYTYRTK 272
               E+ D +  +VSG +E+I  +      V  L  GD+FG+V              R  
Sbjct: 62  YHAGESVDSLCFVVSGSLEVIQDDEV----VAILGKGDVFGDVFWKEATLAQSCANVRAL 117

Query: 273 TLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQH 307
           T   L  +K  AL + ++     + S  +N +  +
Sbjct: 118 TYCDLHVIKRDALQKVLEFYTAFSHSFSRNLILTY 152

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198

 Score =  121 bits (306), Expect = 6e-32
 Identities = 33/178 (18%), Positives = 75/178 (42%), Gaps = 3/178 (1%)

Query: 113 TRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICKS 172
              + ++R  ++    ++   +LP  L+ +IL Y   R++ +  ++  +  ++ +SI + 
Sbjct: 4   DSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFREVSESIRQD 63

Query: 173 ICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEV 232
           +  +     V  V  F       +  +V  ++ E   P + VI +    D ++ I  G V
Sbjct: 64  VANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIV 123

Query: 233 EMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQ 290
           ++I   M   +   +L  G  FGE+  L    ++ + + +T   L  L      + + 
Sbjct: 124 DII---MSDGVIATSLSDGSYFGEICLLTRERRVASVKCETYCTLFSLSVQHFNQVLD 178

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202

 Score =  117 bits (296), Expect = 1e-30
 Identities = 30/178 (16%), Positives = 70/178 (39%), Gaps = 4/178 (2%)

Query: 113 TRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICKS 172
                +++   +    ++  ++LP   +++I  Y   R++ +  ++  ++ +L   + + 
Sbjct: 5   DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREK 64

Query: 173 ICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEV 232
           I        V  + LF +     +  ++ K+K E   P + +I +      +Y I  G V
Sbjct: 65  IVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV 124

Query: 233 EMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQ 290
            ++    +       L  G  FGE+  L    +  + R  T  +L  L      E ++
Sbjct: 125 SVLTKGNK----EMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLE 178

>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212

 Score =  104 bits (262), Expect = 8e-26
 Identities = 39/222 (17%), Positives = 81/222 (36%), Gaps = 16/222 (7%)

Query: 101 LIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAE-SLNQH 159
           +   M         R   +    +   +F+  +RLP  L +++L      +     ++  
Sbjct: 3   MDQRMY-------SRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVS 55

Query: 160 QLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNE 219
           +L++  P  +   I  HL    + ++ LF+  S+  +  L   +K  +  P E +I Q +
Sbjct: 56  ELLKDFPDELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGD 114

Query: 220 APDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTY--RTKTLSQL 277
           A   +Y + SG +E++         +  L  GD+ G       +        +  T   L
Sbjct: 115 ALQAIYFVCSGSMEVLKDNTV----LAILGKGDLIGSDSLTKEQVIKTNANVKALTYCDL 170

Query: 278 LRLKTSALIEAMQSKQEDNVSILKNFLQQ-HKKLKDLNIGDL 318
             +    L E ++   E     +          L++ +  DL
Sbjct: 171 QYISLKGLREVLRLYPEYAQKFVSEIQHDLTYNLREGSGADL 212

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 94.0 bits (235), Expect = 1e-22
 Identities = 31/185 (16%), Positives = 67/185 (36%), Gaps = 35/185 (18%)

Query: 335 LLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
           +  +A+ G   +L   ++     +  D +G TPL  AA+ G    V  LL++ ++  L  
Sbjct: 7   VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 66

Query: 395 YIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAIS----------DPYT 444
                                +AL  A S  +  I ++L     +           +  T
Sbjct: 67  K-----------------GRESALSLACSKGYTDIVKML-----LDCGVDVNEYDWNGGT 104

Query: 445 AGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
               L  A   N +  ++ L++ G +   +   G  ++++A+A     +   +  +   +
Sbjct: 105 P---LLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 161

Query: 505 VGANK 509
           +   K
Sbjct: 162 LQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 78.6 bits (195), Expect = 3e-17
 Identities = 25/151 (16%), Positives = 55/151 (36%), Gaps = 35/151 (23%)

Query: 364 GRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAIS 423
               +H  A++G    +   ++  + ++  D                   G T L  A +
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDE-----------------EGFTPLMWAAA 45

Query: 424 SKHHSIFRILYHCTAIS----------DPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDS 473
               ++   L     +              +A   L  A  +    +++ L+  G++V+ 
Sbjct: 46  HGQIAVVEFL-----LQNGADPQLLGKGRESA---LSLACSKGYTDIVKMLLDCGVDVNE 97

Query: 474 KDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
            D +G T +  A+  N+V+ V  L+ +G+D 
Sbjct: 98  YDWNGGTPLLYAVHGNHVKCVKMLLESGADP 128

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 51.2 bits (124), Expect = 9e-08
 Identities = 15/102 (14%), Positives = 37/102 (36%), Gaps = 18/102 (17%)

Query: 413 NGNTALWEAISSKHHSIFRILYHCTAIS----------DPYTAGDLLCTAEKRNDMSVME 462
             + ++ +  +               I           + +T    L  A     ++V+E
Sbjct: 2   ANSLSVHQLAAQGEMLYLATR-----IEQENVINHTDEEGFTP---LMWAAAHGQIAVVE 53

Query: 463 ELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
            L++ G +     +   +A+ +A ++   ++V  L+  G DV
Sbjct: 54  FLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV 95

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 92.9 bits (232), Expect = 3e-21
 Identities = 41/172 (23%), Positives = 65/172 (37%), Gaps = 28/172 (16%)

Query: 339 ASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIF 398
           A  G+   L  L+      +I  +   +PLH A   GH  CV +LLKH + V+       
Sbjct: 67  AIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA--- 123

Query: 399 MYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAIS---DPYTAGDL---LCTA 452
                         + +T L+ A  S       +L     +          DL   +  A
Sbjct: 124 --------------DWHTPLFNACVSGSWDCVNLL-----LQHGASVQPESDLASPIHEA 164

Query: 453 EKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
            +R  +  +  L+ YG N+D K  H  T + +A        V  L+ +G+DV
Sbjct: 165 ARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV 216

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 81.0 bits (201), Expect = 5e-17
 Identities = 36/174 (20%), Positives = 63/174 (36%), Gaps = 39/174 (22%)

Query: 342 GNAAFLDELLKARLDPDIGDSK-GRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMY 400
           G   F    L +  +P +GD+    +P+H AA  GH+  +  L+     V++        
Sbjct: 38  GPRDFPGIRLLS--NPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA----- 90

Query: 401 NLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAIS----------DPYTAGDLLC 450
                       +  + L EA    H S  +IL     +           D +T    L 
Sbjct: 91  ------------DHVSPLHEACLGGHLSCVKIL-----LKHGAQVNGVTADWHTP---LF 130

Query: 451 TAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
            A        +  L+++G +V  +     + I  A    +VE VN L+  G ++
Sbjct: 131 NACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNI 183

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 74.1 bits (183), Expect = 9e-15
 Identities = 22/155 (14%), Positives = 48/155 (30%), Gaps = 50/155 (32%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409
           L+    + D   S   TPL++A       CV  LL+  ++V+                  
Sbjct: 176 LIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ----------------- 218

Query: 410 LDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGL 469
                ++ L   + +                                   +   L+ +G 
Sbjct: 219 -GKGQDSPLHAVVRTAS-------------------------------EELACLLMDFGA 246

Query: 470 NVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
           +  +K+  G+  +E+   E+ +  + FL   G+ +
Sbjct: 247 DTQAKNAEGKRPVELVPPESPLAQL-FLEREGASL 280

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 62.5 bits (153), Expect = 7e-11
 Identities = 21/138 (15%), Positives = 44/138 (31%), Gaps = 23/138 (16%)

Query: 370 IAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSI 429
           + +S  H      L+   S++   D                 M+G+              
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMD------------GKQGGMDGSKPAGPRDFPGI--- 45

Query: 430 FRILYH---CTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAM 486
            R+L +     A+SD ++    +  A        +  L+  G  V+       + +  A 
Sbjct: 46  -RLLSNPLMGDAVSD-WSP---MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEAC 100

Query: 487 AENNVEMVNFLVMNGSDV 504
              ++  V  L+ +G+ V
Sbjct: 101 LGGHLSCVKILLKHGAQV 118

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 62.5 bits (153), Expect = 7e-11
 Identities = 27/161 (16%), Positives = 45/161 (27%), Gaps = 46/161 (28%)

Query: 356 DPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGN 415
           D   G   G  P       G       LL +                         ++  
Sbjct: 25  DGKQGGMDGSKPAGPRDFPGIR-----LLSNPLMGD-------------------AVSDW 60

Query: 416 TALWEAISSKHHSIFRIL------------YHCTAISDPYTAGDLLCTAEKRNDMSVMEE 463
           + + EA    H    R L             H +           L  A     +S ++ 
Sbjct: 61  SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSP----------LHEACLGGHLSCVKI 110

Query: 464 LVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
           L+K+G  V+       T +  A    + + VN L+ +G+ V
Sbjct: 111 LLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV 151

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 47.9 bits (115), Expect = 4e-06
 Identities = 8/56 (14%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 335 LLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNV 390
           L  V  T +      L+    D    +++G+ P+ +   +     +  L +  +++
Sbjct: 226 LHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLF-LEREGASL 280

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 89.4 bits (223), Expect = 5e-21
 Identities = 34/186 (18%), Positives = 71/186 (38%), Gaps = 36/186 (19%)

Query: 335 LLTVASTGNAAFLDELLKARLD-PDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLR 393
           +  +A+ G    L E L+   +  +  D +G TPL  A++ G  E V  LL+  ++ H+ 
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65

Query: 394 DYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAIS----------DPY 443
                                 +AL  A +  +  I  +L     +           +  
Sbjct: 66  AK-----------------ERESALSLASTGGYTDIVGLL-----LERDVDINIYDWNGG 103

Query: 444 TAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSD 503
           T    L  A + N +  +E L+  G ++ ++   G T +++A+A    ++   +  +   
Sbjct: 104 TP---LLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILK 160

Query: 504 VVGANK 509
           +  +N 
Sbjct: 161 LFQSNL 166

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 77.8 bits (193), Expect = 6e-17
 Identities = 26/152 (17%), Positives = 54/152 (35%), Gaps = 36/152 (23%)

Query: 364 GRTPLHIAASKGHEECVLVLLKH-ASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAI 422
               +H  A++G  + +   L+   + V+                   D  G T L  A 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP-----------------DERGFTPLIWAS 44

Query: 423 SSKHHSIFRILYHCTAIS----------DPYTAGDLLCTAEKRNDMSVMEELVKYGLNVD 472
           +       R L     +           +  +A   L  A       ++  L++  ++++
Sbjct: 45  AFGEIETVRFL-----LEWGADPHILAKERESA---LSLASTGGYTDIVGLLLERDVDIN 96

Query: 473 SKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
             D +G T +  A+  N+V+ V  L+  G+D+
Sbjct: 97  IYDWNGGTPLLYAVRGNHVKCVEALLARGADL 128

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 64.0 bits (157), Expect = 4e-12
 Identities = 20/131 (15%), Positives = 37/131 (28%), Gaps = 48/131 (36%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409
           LL+  +D +I D  G TPL  A    H +CV  LL   +++                   
Sbjct: 88  LLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEAD-------------- 133

Query: 410 LDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGL 469
              +G T +  A++  +                                 V + +  + L
Sbjct: 134 ---SGYTPMDLAVALGYR-------------------------------KVQQVIENHIL 159

Query: 470 NVDSKDRHGRT 480
            +   +     
Sbjct: 160 KLFQSNLVPAD 170

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 90.6 bits (226), Expect = 9e-21
 Identities = 35/153 (22%), Positives = 55/153 (35%), Gaps = 24/153 (15%)

Query: 356 DPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGN 415
                D  GR PLH + S    E    LL    NV+L DY               D +G 
Sbjct: 28  LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP--------------DDSGW 73

Query: 416 TALWEAISSKHHSIFRILYHCTAISDP-------YTAGDLLCTAEKRNDMSVMEELVKYG 468
           T    A S  +  + + LY      D         T    L  A  +    V + L++ G
Sbjct: 74  TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTC---LHLAVGKKWFEVSQFLIENG 130

Query: 469 LNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNG 501
            +V  KD+  +  +  A +  +++++  L   G
Sbjct: 131 ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 69.0 bits (170), Expect = 2e-13
 Identities = 31/163 (19%), Positives = 52/163 (31%), Gaps = 55/163 (33%)

Query: 350 LLKARLDPDI--GDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDII 407
           L    L PD+    ++G T LH+A  K   E    L+++ ++V ++D             
Sbjct: 91  LYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK------------ 138

Query: 408 ILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKY 467
                     L  A S     +                               +E L   
Sbjct: 139 -----FNQIPLHRAASVGSLKL-------------------------------IELLCGL 162

Query: 468 GLN-VDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509
           G + V+ +D+ G T +  A+AE + +    LV       GA  
Sbjct: 163 GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK----YGAEY 201

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 60.2 bits (147), Expect = 2e-10
 Identities = 28/138 (20%), Positives = 43/138 (31%), Gaps = 48/138 (34%)

Query: 356 DPDIGDSKGRTPLHIAASKGHEECVLVLLKH-ASNVHLRDYIIFMYNLSYDIIILLDMNG 414
              I D   + PLH AAS G  + + +L     S V+ +D                   G
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK-----------------QG 174

Query: 415 NTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSK 474
            T L+ A++  H     +L     +                          KYG   D  
Sbjct: 175 WTPLFHALAEGHGDAAVLL-----VE-------------------------KYGAEYDLV 204

Query: 475 DRHGRTAIEIAMAENNVE 492
           D  G  A ++A+ E   +
Sbjct: 205 DNKGAKAEDVALNEQVKK 222

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 45.5 bits (109), Expect = 1e-05
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 449 LCTAEKRNDMSVMEE-LVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
           L  A   N+   ++E L      +  KD+ GR  +  +++    E+ +FL+    +V
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 45.1 bits (108), Expect = 2e-05
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 21/79 (26%)

Query: 356 DPDIGDSKGRTPLHIAASKGHEECVLVLL-KHASNVHLRDYIIFMYNLSYDIIILLDMNG 414
             +  D +G TPL  A ++GH +  ++L+ K+ +   L D                   G
Sbjct: 166 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN-----------------KG 208

Query: 415 NTALWEAISSKHHSIFRIL 433
             A   A+   +  + +  
Sbjct: 209 AKAEDVAL---NEQVKKFF 224

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 93.3 bits (233), Expect = 2e-20
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 35/176 (19%)

Query: 339 ASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIF 398
           +  G+   +  LL+    P++ + K  TPLH+AA  GH E    LL++ + V+ +     
Sbjct: 22  SFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAK--- 78

Query: 399 MYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAIS----------DPYTAGDL 448
                         +  T L  A    H ++ ++L     +             +T    
Sbjct: 79  --------------DDQTPLHCAARIGHTNMVKLL-----LENNANPNLATTAGHTP--- 116

Query: 449 LCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
           L  A +   +  +  L++   +     + G T + +A     V +   L+   +  
Sbjct: 117 LHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP 172

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 92.9 bits (232), Expect = 2e-20
 Identities = 35/178 (19%), Positives = 67/178 (37%), Gaps = 39/178 (21%)

Query: 339 ASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIF 398
           A          LL+     +    +G TPLH+AA +GH E V +LL   +N +L +    
Sbjct: 220 AKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK--- 276

Query: 399 MYNLSYDIIILLDMNGNTALWEAISSKHHSIFRIL------------YHCTAISDPYTAG 446
                         +G T L       H  +  +L               T         
Sbjct: 277 --------------SGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTP-------- 314

Query: 447 DLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
             L  A    ++ +++ L+++  +V++K + G + +  A  + + ++V  L+ NG+  
Sbjct: 315 --LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP 370

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 92.6 bits (231), Expect = 3e-20
 Identities = 40/176 (22%), Positives = 64/176 (36%), Gaps = 35/176 (19%)

Query: 339 ASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIF 398
               N   +  LL     P      G TPLHIAA +   E    LL++  + +       
Sbjct: 187 VHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESV--- 243

Query: 399 MYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAIS----------DPYTAGDL 448
                          G T L  A    H  +  +L     +S             T    
Sbjct: 244 --------------QGVTPLHLAAQEGHAEMVALL-----LSKQANGNLGNKSGLTP--- 281

Query: 449 LCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
           L    +   + V + L+K+G+ VD+  R G T + +A    N+++V FL+ + +DV
Sbjct: 282 LHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV 337

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 89.9 bits (224), Expect = 3e-19
 Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 35/159 (22%)

Query: 356 DPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGN 415
               G   G TPLH+A+  GH   V  LL+  ++ ++ +                     
Sbjct: 6   SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNV-----------------KVE 48

Query: 416 TALWEAISSKHHSIFRILYHCTAIS----------DPYTAGDLLCTAEKRNDMSVMEELV 465
           T L  A  + H  + + L     +           D  T    L  A +    ++++ L+
Sbjct: 49  TPLHMAARAGHTEVAKYL-----LQNKAKVNAKAKDDQTP---LHCAARIGHTNMVKLLL 100

Query: 466 KYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
           +   N +     G T + IA  E +VE V  L+   +  
Sbjct: 101 ENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQ 139

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 86.8 bits (216), Expect = 2e-18
 Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 48/155 (30%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409
           LL+    P+     G TPLH+A    + + V +LL    + H   +              
Sbjct: 165 LLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW-------------- 210

Query: 410 LDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGL 469
              NG T L  A                                K+N + V   L++YG 
Sbjct: 211 ---NGYTPLHIAA-------------------------------KQNQVEVARSLLQYGG 236

Query: 470 NVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
           + +++   G T + +A  E + EMV  L+   ++ 
Sbjct: 237 SANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 79.1 bits (196), Expect = 9e-16
 Identities = 31/170 (18%), Positives = 56/170 (32%), Gaps = 50/170 (29%)

Query: 339 ASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIF 398
           A  G+    D L+K  +  D     G TPLH+A+  G+ + V  LL+H ++V+ +     
Sbjct: 286 AQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTK--- 342

Query: 399 MYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDM 458
                          G + L +A    H  I  +L                         
Sbjct: 343 --------------LGYSPLHQAAQQGHTDIVTLL------------------------- 363

Query: 459 SVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGAN 508
                 +K G + +     G T + IA     + + + L +   +   + 
Sbjct: 364 ------LKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDE--TSF 405

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 71.4 bits (176), Expect = 2e-13
 Identities = 27/153 (17%), Positives = 50/153 (32%), Gaps = 51/153 (33%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409
           LL+ + D +     G +PLH AA +GH + V +LLK+ ++ +                  
Sbjct: 330 LLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS--------------- 374

Query: 410 LDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGL 469
              +G T L  A    + S+  +L                            + +     
Sbjct: 375 --SDGTTPLAIAKRLGYISVTDVL----------------------------KVVTDETS 404

Query: 470 NVDSKDRHGRTAIEIAM------AENNVEMVNF 496
            V   D+H  +  E          +   E+++F
Sbjct: 405 FVLVSDKHRMSFPETVDEILDVSEDEGEELISF 437

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 87.9 bits (219), Expect = 2e-20
 Identities = 33/183 (18%), Positives = 56/183 (30%), Gaps = 46/183 (25%)

Query: 356 DPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGN 415
           D + GD  G +PLH A  +G    V +L+   + +++                  +   +
Sbjct: 31  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM-----------------NRGDD 73

Query: 416 TALWEAISSKHHSIFRILYHCTAIS----------DPYTAGDLLCTAEKRNDMSVMEELV 465
           T L  A S  H  I + L     +                  L           V E+LV
Sbjct: 74  TPLHLAASHGHRDIVQKL-----LQYKADINAVNEHGNVP--LHYACFW-GQDQVAEDLV 125

Query: 466 KYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKRE 525
             G  V   +++G   ++ A A     +       G ++   N+         D   K  
Sbjct: 126 ANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL---NR-----IPYKDTFWK-- 175

Query: 526 IGH 528
            G 
Sbjct: 176 -GT 177

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 80.2 bits (199), Expect = 1e-17
 Identities = 25/161 (15%), Positives = 55/161 (34%), Gaps = 36/161 (22%)

Query: 360 GDSKGRTPLHIAASKGHEECVLVLLKH-ASNVHLRDYIIFMYNLSYDIIILLDMNGNTAL 418
           G  +    +     +G+   V + L +  ++++  D                  +G + L
Sbjct: 1   GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDD-----------------HGFSPL 43

Query: 419 WEAISSKHHSIFRILYHCTAIS----------DPYTAGDLLCTAEKRNDMSVMEELVKYG 468
             A      ++  +L     I              T    L  A       ++++L++Y 
Sbjct: 44  HWACREGRSAVVEML-----IMRGARINVMNRGDDTP---LHLAASHGHRDIVQKLLQYK 95

Query: 469 LNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509
            ++++ + HG   +  A      ++   LV NG+ V   NK
Sbjct: 96  ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNK 136

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 58.2 bits (142), Expect = 4e-10
 Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 17/84 (20%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409
           LL+ + D +  +  G  PLH A   G ++    L+ + + V + +               
Sbjct: 91  LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNK-------------- 136

Query: 410 LDMNGNTALWEAISSKHHSIFRIL 433
               G   + +A +     +    
Sbjct: 137 ---YGEMPVDKAKAPLRELLRERA 157

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 90.3 bits (225), Expect = 3e-20
 Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 33/163 (20%)

Query: 358 DIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTA 417
           D+ +  G+T LH+AA  G    V  L    + V + +                   G+TA
Sbjct: 39  DLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAER-----------------GGHTA 81

Query: 418 LWEAISSKHHSIFRIL----------------YHCTAISDPYTAGDLLCTAEKRNDMSVM 461
           L  A   + H+   +L                      +   +       ++   +    
Sbjct: 82  LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEE 141

Query: 462 EELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
                + L +++++  G T + +A+   + EMV  L   G+D+
Sbjct: 142 PRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL 184

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 85.7 bits (213), Expect = 9e-19
 Identities = 28/223 (12%), Positives = 64/223 (28%), Gaps = 39/223 (17%)

Query: 284 ALIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGN 343
           AL  A + +           L Q +     +  D      ++             +    
Sbjct: 81  ALHLACRVRAHTCA----CVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNP 136

Query: 344 AAFLDELLKAR-LDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNL 402
               +   +   L  +  +  G TPLH+A      E V +L    ++++  +        
Sbjct: 137 ENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE-------- 188

Query: 403 SYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAIS----------DPYTAGDLLCTA 452
                      G T L  A+ ++  S+  +L     +              T    L +A
Sbjct: 189 --------PTCGRTPLHLAVEAQAASVLELL-----LKAGADPTARMYGGRTP---LGSA 232

Query: 453 EKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVN 495
             R +  +   L  +G           +    + ++++ +  +
Sbjct: 233 LLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRD 275

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 72.6 bits (179), Expect = 3e-14
 Identities = 28/158 (17%), Positives = 44/158 (27%), Gaps = 45/158 (28%)

Query: 361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWE 420
              G T LH+A    HE  +  LL  ++     D              L +  G TAL  
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLD--------------LQNDLGQTAL-- 49

Query: 421 AISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRT 480
                         H  A                  + S +E+L   G  V   +R G T
Sbjct: 50  --------------HLAA---------------ILGEASTVEKLYAAGAGVLVAERGGHT 80

Query: 481 AIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLN 518
           A+ +A           L+             + + + +
Sbjct: 81  ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQD 118

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 88.0 bits (219), Expect = 7e-20
 Identities = 37/163 (22%), Positives = 64/163 (39%), Gaps = 36/163 (22%)

Query: 356 DPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGN 415
             +  ++  +TPLH+A      E    LL    +  LRD+                  GN
Sbjct: 37  FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF-----------------RGN 79

Query: 416 TALWEAISSKHHSIFRILYHCTAIS---DPYTAGDL----------LCTAEKRNDMSVME 462
           T L  A      +   +L           P+    L          L  A     + ++E
Sbjct: 80  TPLHLACEQGCLASVGVL-----TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134

Query: 463 ELVKYGLNVDSKD-RHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
            LV  G +V++++  +GRTA+ +A+   N ++V+ L+  G+DV
Sbjct: 135 LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV 177

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 72.6 bits (179), Expect = 1e-14
 Identities = 22/152 (14%), Positives = 46/152 (30%), Gaps = 47/152 (30%)

Query: 358 DIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTA 417
              +  G T LH+A+  G+   V +L+   ++V+ ++                  NG TA
Sbjct: 111 KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE----------------PCNGRTA 154

Query: 418 LWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRH 477
           L                H                A    +  ++  L+K G +V+     
Sbjct: 155 L----------------HL---------------AVDLQNPDLVSLLLKCGADVNRVTYQ 183

Query: 478 GRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509
           G +  ++     +  +   L     + +    
Sbjct: 184 GYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP 215

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 66.0 bits (162), Expect = 2e-12
 Identities = 19/148 (12%), Positives = 39/148 (26%), Gaps = 52/148 (35%)

Query: 361 DSKGRTPLHIAASKGH----EECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNT 416
              G + LH+A          E +  +    + ++ ++                     T
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN-----------------LQQT 47

Query: 417 ALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDR 476
            L                H   I                N   + E L+  G + + +D 
Sbjct: 48  PL----------------HLAVI---------------TNQPEIAEALLGAGCDPELRDF 76

Query: 477 HGRTAIEIAMAENNVEMVNFLVMNGSDV 504
            G T + +A  +  +  V  L  + +  
Sbjct: 77  RGNTPLHLACEQGCLASVGVLTQSCTTP 104

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 7/37 (18%), Positives = 13/37 (35%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKH 386
           LLK   D +    +G +P  +   +        L + 
Sbjct: 170 LLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 206

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 86.0 bits (214), Expect = 1e-19
 Identities = 34/155 (21%), Positives = 50/155 (32%), Gaps = 37/155 (23%)

Query: 361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWE 420
            S+  TP   AA K  E+ +  LL+   +V   D                  NG TAL  
Sbjct: 41  VSEYETPWWTAARKADEQALSQLLEDR-DVDAVDE-----------------NGRTALLF 82

Query: 421 AISSKHHSIFRILYHCTAIS-----------DPYTAGDLLCTAEKRNDMSVMEELVKYGL 469
                     R+L                     TA   L  A       V+E LV+ G 
Sbjct: 83  VAGLGSDKCVRLL-----AEAGADLDHRDMRGGLTA---LHMAAGYVRPEVVEALVELGA 134

Query: 470 NVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
           +++ +D  G TA+E+A            +  G  +
Sbjct: 135 DIEVEDERGLTALELAREILKTTPKGNPMQFGRRI 169

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 76.0 bits (188), Expect = 3e-16
 Identities = 28/149 (18%), Positives = 44/149 (29%), Gaps = 28/149 (18%)

Query: 361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWE 420
             +G     I    GH    +     A++V                         T  W 
Sbjct: 11  AGEGAMEYLIEWKDGHSPSWVPSSYIAADV--------------------VSEYETPWWT 50

Query: 421 AISSKHHSIFRILYHCTAI----SDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKD- 475
           A           L     +     +  TA   L           +  L + G ++D +D 
Sbjct: 51  AARKADEQALSQLLEDRDVDAVDENGRTA---LLFVAGLGSDKCVRLLAEAGADLDHRDM 107

Query: 476 RHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
           R G TA+ +A      E+V  LV  G+D+
Sbjct: 108 RGGLTALHMAAGYVRPEVVEALVELGADI 136

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 89.2 bits (222), Expect = 2e-19
 Identities = 19/164 (11%), Positives = 45/164 (27%), Gaps = 32/164 (19%)

Query: 356 DPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGN 415
             D  + +G + LH A     E+  +  ++   +V++ D                     
Sbjct: 203 RLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDN-----------------EHT 245

Query: 416 TALWEAISSKHHSIFRIL---------------YHCTAISDPYTAGDLLCTAEKRNDMSV 460
             L+ ++ +    + + L                  T + D     D +  A   +   V
Sbjct: 246 VPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEV 305

Query: 461 MEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
           ++ L +    V      G         +    +    +   + V
Sbjct: 306 LQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPV 349

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 75.7 bits (187), Expect = 5e-15
 Identities = 27/183 (14%), Positives = 57/183 (31%), Gaps = 37/183 (20%)

Query: 342 GNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDY------ 395
           G  +  D     +L+    D +    +H+AA KG  + V  L++   +  +++       
Sbjct: 1   GPGSMTD---FPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTAL 57

Query: 396 IIFMYNLSYDIIILL--------DMNGNTALWEAISSKHHSIFRILYHCTAIS----DPY 443
            +       D    L          +G   +  A+ +    +   L     +        
Sbjct: 58  HLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVAL-----VEGAKERGQ 112

Query: 444 TAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENN--VEMVNFLVMNG 501
                     + ++  V E      +    K   G+TA+   +      +EM+  LV  G
Sbjct: 113 MP---ESLLNECDEREVNE------IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLG 163

Query: 502 SDV 504
           +  
Sbjct: 164 ASP 166

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 75.3 bits (186), Expect = 7e-15
 Identities = 20/159 (12%), Positives = 43/159 (27%), Gaps = 43/159 (27%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409
           L++    P   D    TPL  A    + E + +++    +                 +  
Sbjct: 159 LVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLR------------LDY 206

Query: 410 LDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGL 469
            +  GN+ L                H                    N   V    V+ G+
Sbjct: 207 ANKQGNSHL----------------HWAI---------------LINWEDVAMRFVEMGI 235

Query: 470 NVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGAN 508
           +V+ +D      + +++    V +   L+      +   
Sbjct: 236 DVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQA 274

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 51.4 bits (124), Expect = 4e-07
 Identities = 6/69 (8%), Positives = 14/69 (20%), Gaps = 17/69 (24%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409
           L +   +     + G         K       + L  ++ V  R                
Sbjct: 309 LQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSR-------------- 354

Query: 410 LDMNGNTAL 418
              +   + 
Sbjct: 355 ---SRARSS 360

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 83.3 bits (207), Expect = 3e-19
 Identities = 23/156 (14%), Positives = 49/156 (31%), Gaps = 31/156 (19%)

Query: 356 DPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGN 415
              +        L  AA++G  E V  LL+  ++ +  +                   G 
Sbjct: 4   GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNR-----------------FGR 46

Query: 416 TALWEAISSKHHSIFRILYHCTAIS--------DPYTAGDLLCTAEKRNDMSVMEELVKY 467
             +          +  +L     +         DP T    +  A +   +  +  L + 
Sbjct: 47  RPIQVM-MMGSAQVAELL-----LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA 100

Query: 468 GLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSD 503
           G  +D  D  GR  +++A  + + ++  +L     D
Sbjct: 101 GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 52.4 bits (127), Expect = 2e-08
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKH 386
           L +A    D+ D+ GR P+ +A  +GH +    L   
Sbjct: 97  LHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 46.7 bits (112), Expect = 2e-06
 Identities = 12/56 (21%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 449 LCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
           L TA  R  +  + +L++ G + ++ +R GR  I++     + ++   L+++G++ 
Sbjct: 16  LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM-MMGSAQVAELLLLHGAEP 70

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 88.3 bits (220), Expect = 3e-19
 Identities = 42/186 (22%), Positives = 72/186 (38%), Gaps = 36/186 (19%)

Query: 335 LLTVASTGNAAFLDELL-KARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLR 393
           LL  A +GN   L  LL    ++    D +  TPLH+AA       V +LL+H ++VH +
Sbjct: 28  LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK 87

Query: 394 DYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAIS----------DPY 443
           D                   G   L  A S  H+ +  +L     +             +
Sbjct: 88  DK-----------------GGLVPLHNACSYGHYEVTELL-----LKHGACVNAMDLWQF 125

Query: 444 TAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSD 503
           T    L  A  +N + V   L+ +G +    + HG++A+++A      E + +     S 
Sbjct: 126 TP---LHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSL 182

Query: 504 VVGANK 509
           +  A +
Sbjct: 183 LQAARE 188

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 81.8 bits (203), Expect = 5e-17
 Identities = 31/188 (16%), Positives = 58/188 (30%), Gaps = 43/188 (22%)

Query: 335 LLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHE---ECVLVLLKHASNVH 391
           LL  A   + A + + L   +          T LH A +  H    +   +LL+  +NV+
Sbjct: 182 LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN 241

Query: 392 LRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAIS----------D 441
            ++                  +  T L  A    H+ +  +L                  
Sbjct: 242 EKNK-----------------DFMTPLHVAAERAHNDVMEVL-----HKHGAKMNALDSL 279

Query: 442 PYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNG 501
             TA   L  A     +     L+ YG +       G TA ++       E V  ++   
Sbjct: 280 GQTA---LHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG-----NEAVQQILSES 331

Query: 502 SDVVGANK 509
           + +  ++ 
Sbjct: 332 TPMRTSDV 339

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 74.5 bits (184), Expect = 1e-14
 Identities = 25/157 (15%), Positives = 48/157 (30%), Gaps = 49/157 (31%)

Query: 349 ELLKARLDPDIGDSKGRTPLHIAASKGH-EECVLVLLKHASNVHLRDYIIFMYNLSYDII 407
           +L        +     +  L  AA  G+ E+ + +L     N H  D             
Sbjct: 9   DLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDG------------ 56

Query: 408 ILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKY 467
                  +T L  A       I                               ++ L+++
Sbjct: 57  -----RKSTPLHLAAGYNRVRI-------------------------------VQLLLQH 80

Query: 468 GLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
           G +V +KD+ G   +  A +  + E+   L+ +G+ V
Sbjct: 81  GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV 117

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 54.4 bits (132), Expect = 5e-08
 Identities = 21/131 (16%), Positives = 36/131 (27%), Gaps = 53/131 (40%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409
           L K     +  DS G+T LH AA  GH +   +LL + S+  +                 
Sbjct: 266 LHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSII---------------- 309

Query: 410 LDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGL 469
             + G TA                                   E       +++++    
Sbjct: 310 -SLQGFTAAQMG------------------------------NE------AVQQILSEST 332

Query: 470 NVDSKDRHGRT 480
            + + D   R 
Sbjct: 333 PMRTSDVDYRL 343

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 85.8 bits (213), Expect = 4e-19
 Identities = 24/152 (15%), Positives = 42/152 (27%), Gaps = 24/152 (15%)

Query: 357 PDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNT 416
           P      G+  +  A           L     +                 II +    +T
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGD-----------------IIYITDMSDT 47

Query: 417 ALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDR 476
             W+  S     +    Y              L  A KR ++S + E +   + V+  D+
Sbjct: 48  NWWKGTSKGRTGLIPSNYVAEQAESIDNP---LHEAAKRGNLSWLRECLDNRVGVNGLDK 104

Query: 477 HGRTAIEIAMAENNVEMVNFLVMNGSDVVGAN 508
            G TA+  A    + ++V  L           
Sbjct: 105 AGSTALYWACHGGHKDIVEMLFTQP----NIE 132

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 82.3 bits (204), Expect = 5e-18
 Identities = 33/196 (16%), Positives = 58/196 (29%), Gaps = 36/196 (18%)

Query: 325 EDGDPNMSVN-----LLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEEC 379
           E+GD     +          S G        L               PLH AA +G+   
Sbjct: 34  EEGDIIYITDMSDTNWWKGTSKGRT-----GLIPSNYVAEQAESIDNPLHEAAKRGNLSW 88

Query: 380 VLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRIL-YHCTA 438
           +   L +   V+  D                   G+TAL+ A    H  I  +L      
Sbjct: 89  LRECLDNRVGVNGLDK-----------------AGSTALYWACHGGHKDIVEMLFTQPNI 131

Query: 439 ---ISDPY--TAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEM 493
                +    TA   L  A  +    +++ L+  G   D ++   + A ++A       +
Sbjct: 132 ELNQQNKLGDTA---LHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASL 188

Query: 494 VNFLVMNGSDVVGANK 509
           +       +    +N 
Sbjct: 189 LKKKQGTDAVRTLSNA 204

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 85.6 bits (213), Expect = 5e-19
 Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 40/170 (23%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKH----ASNVHLRDYIIFMYNLSYD 405
           L+ A   P   D  G+T  H+A       C+  LL        ++  R+Y          
Sbjct: 65  LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY---------- 114

Query: 406 IIILLDMNGNTALWEAISSKHHSIFRILYHCTAIS-----------DPYTAGDLLCTAEK 454
                  +G TAL  A++++     ++L     +               +    L  A +
Sbjct: 115 -------DGLTALHVAVNTECQETVQLL-----LERGADIDAVDIKSGRSP---LIHAVE 159

Query: 455 RNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
            N +S+++ L+++G NV+++   G +A+  A     + +V  LV +G+D 
Sbjct: 160 NNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS 209

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 85.6 bits (213), Expect = 6e-19
 Identities = 28/160 (17%), Positives = 61/160 (38%), Gaps = 34/160 (21%)

Query: 352 KARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLD 411
              LD +  +  G T LH+A +   +E V +LL+  +++   D                 
Sbjct: 104 PGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIK--------------- 148

Query: 412 MNGNTALWEAISSKHHSIFRILYHCTAIS----------DPYTAGDLLCTAEKRNDMSVM 461
            +G + L  A+ +   S+ ++L     +              +A   L +A  R  + ++
Sbjct: 149 -SGRSPLIHAVENNSLSMVQLL-----LQHGANVNAQMYSGSSA---LHSASGRGLLPLV 199

Query: 462 EELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNG 501
             LV+ G +   K+ H  T + +A +   ++++       
Sbjct: 200 RTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRP 239

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 82.9 bits (206), Expect = 4e-18
 Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 30/159 (18%)

Query: 356 DPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGN 415
           + DI ++  +TPLH+A        V +L+   ++    D                  +G 
Sbjct: 38  ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDR-----------------HGQ 80

Query: 416 TALWEAISSKHHSIFRILYHCTAISDP---------YTAGDLLCTAEKRNDMSVMEELVK 466
           TA   A   +  +  R L    A              TA   L  A        ++ L++
Sbjct: 81  TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA---LHVAVNTECQETVQLLLE 137

Query: 467 YGLNVDSKDRH-GRTAIEIAMAENNVEMVNFLVMNGSDV 504
            G ++D+ D   GR+ +  A+  N++ MV  L+ +G++V
Sbjct: 138 RGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV 176

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 65.9 bits (162), Expect = 3e-12
 Identities = 28/145 (19%), Positives = 45/145 (31%), Gaps = 52/145 (35%)

Query: 361 DSKGRTPLHIAASKGHEECVLVLL----KHASNVHLRDYIIFMYNLSYDIIILLDMNGNT 416
           D  G TPLHIA  +G+   V  L+    +    + + +                     T
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN-----------------LRQT 48

Query: 417 ALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDR 476
            L                H   I+                  SV+  LV  G +  + DR
Sbjct: 49  PL----------------HLAVIT---------------TLPSVVRLLVTAGASPMALDR 77

Query: 477 HGRTAIEIAMAENNVEMVNFLVMNG 501
           HG+TA  +A    +   +  L+ + 
Sbjct: 78  HGQTAAHLACEHRSPTCLRALLDSA 102

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 43.2 bits (103), Expect = 1e-04
 Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 27/94 (28%)

Query: 411 DMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLN 470
           D +G+T L  A+   +      L                           +    + G  
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRL---------------------------VNLFQQGGRE 38

Query: 471 VDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
           +D  +   +T + +A+      +V  LV  G+  
Sbjct: 39  LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP 72

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 83.6 bits (207), Expect = 8e-19
 Identities = 23/230 (10%), Positives = 47/230 (20%), Gaps = 61/230 (26%)

Query: 281 KTSALIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVAS 340
           +   +  A      ++   L               G    ES        +   L     
Sbjct: 6   EYRTVSAAAMLGTYEDFLEL------------FEKGYEDKES--VLKSNILYDVLRNNND 51

Query: 341 TGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHE------ECVLVLLKHASNVHLRD 394
                    L+    D      +G T        G        E   + L+  +++    
Sbjct: 52  EARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALY 111

Query: 395 YIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEK 454
                                  +++ I +       ++     I               
Sbjct: 112 K-----------------PYKIVVFKNIFNYFVDENEMIPLYKLI--------------- 139

Query: 455 RNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
                      + GL +  KD+ G TA+E          +  +       
Sbjct: 140 ---------FSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKY 180

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 13/104 (12%), Positives = 31/104 (29%), Gaps = 11/104 (10%)

Query: 412 MNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGD-LLCTAEKRNDMSVMEELVKY--- 467
           M+    +  A     +  F  L+              +L    + N+     ++  +   
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63

Query: 468 -GLNVDSKDRHGRTAIEIAMAENN------VEMVNFLVMNGSDV 504
            G ++ S+ + G T                 E+    +  G+D+
Sbjct: 64  KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADI 107

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 52.0 bits (125), Expect = 6e-08
 Identities = 7/45 (15%), Positives = 16/45 (35%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
             ++ L   I D  G T L           + ++  +    +L++
Sbjct: 140 FSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 85.0 bits (211), Expect = 8e-19
 Identities = 34/155 (21%), Positives = 50/155 (32%), Gaps = 37/155 (23%)

Query: 361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWE 420
            S+  TP   AA K  E+ +  LL+   +V   D                  NG TAL  
Sbjct: 42  VSEYETPWWTAARKADEQALSQLLEDR-DVDAVDE-----------------NGRTALLF 83

Query: 421 AISSKHHSIFRILYHCTAIS-----------DPYTAGDLLCTAEKRNDMSVMEELVKYGL 469
                     R+L                     TA   L  A       V+E LV+ G 
Sbjct: 84  VAGLGSDKCVRLL-----AEAGADLDHRDMRGGLTA---LHMAAGYVRPEVVEALVELGA 135

Query: 470 NVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
           +++ +D  G TA+E+A            +  G  +
Sbjct: 136 DIEVEDERGLTALELAREILKTTPKGNPMQFGRRI 170

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 76.1 bits (188), Expect = 9e-16
 Identities = 28/150 (18%), Positives = 44/150 (29%), Gaps = 28/150 (18%)

Query: 360 GDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALW 419
              +G     I    GH    +     A++V                         T  W
Sbjct: 11  TAGEGAMEYLIEWKDGHSPSWVPSSYIAADV--------------------VSEYETPWW 50

Query: 420 EAISSKHHSIFRILYHCTAI----SDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKD 475
            A           L     +     +  TA   L           +  L + G ++D +D
Sbjct: 51  TAARKADEQALSQLLEDRDVDAVDENGRTA---LLFVAGLGSDKCVRLLAEAGADLDHRD 107

Query: 476 -RHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
            R G TA+ +A      E+V  LV  G+D+
Sbjct: 108 MRGGLTALHMAAGYVRPEVVEALVELGADI 137

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 62.2 bits (152), Expect = 4e-11
 Identities = 16/147 (10%), Positives = 40/147 (27%), Gaps = 38/147 (25%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409
           L++   D ++ D +G T L +A            ++    + L   I  +    ++   +
Sbjct: 130 LVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEV 189

Query: 410 LDMN-----GNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEEL 464
            ++      G           +                            ++        
Sbjct: 190 DEIVEKRGKGKDVE-------YL------------------------VRWKDGGDCEWVK 218

Query: 465 VKYGLNVDSKDRHGRTAIEIAMAENNV 491
             +     +KD      +E A+AE+ +
Sbjct: 219 GVHVAEDVAKD--YEDGLEYAVAESVI 243

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 13/76 (17%)

Query: 320 AESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEEC 379
              G E       +N+L       A   + + K          KG+   ++   K   +C
Sbjct: 168 RRIGLEK-----VINVLEGQVFEYAEVDEIVEK--------RGKGKDVEYLVRWKDGGDC 214

Query: 380 VLVLLKHASNVHLRDY 395
             V   H +    +DY
Sbjct: 215 EWVKGVHVAEDVAKDY 230

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 84.8 bits (211), Expect = 9e-19
 Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 36/160 (22%)

Query: 356 DPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGN 415
           + D      RTPL  AA   H E V  L+K  + V  +D                   G+
Sbjct: 36  NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA-----------------EGS 78

Query: 416 TALWEAISSKHHSIFRILYHCTAIS-----------DPYTAGDLLCTAEKRNDMSVMEEL 464
           T L  A    H+ + + L     +S             +T    +  A +   + +++ L
Sbjct: 79  TCLHLAAKKGHYEVVQYL-----LSNGQMDVNCQDDGGWTP---MIWATEYKHVDLVKLL 130

Query: 465 VKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
           +  G +++ +D      +  A     V++   L+    D+
Sbjct: 131 LSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 83.6 bits (208), Expect = 3e-18
 Identities = 30/158 (18%), Positives = 51/158 (32%), Gaps = 35/158 (22%)

Query: 356 DPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGN 415
           D +  D  G TP+  A    H + V +LL   S++++RD                    N
Sbjct: 103 DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDN-----------------EEN 145

Query: 416 TALWEAISSKHHSIFRILYHCTAIS----------DPYTAGDLLCTAEKRNDMSVMEELV 465
             L  A  S    I  IL     ++             +    L  A + N    +   +
Sbjct: 146 ICLHWAAFSGCVDIAEIL-----LAAKCDLHAVNIHGDSP---LHIAARENRYDCVVLFL 197

Query: 466 KYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSD 503
               +V  K++ G T ++ A   + V     +     D
Sbjct: 198 SRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 70.9 bits (175), Expect = 5e-14
 Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 48/146 (32%)

Query: 356 DPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGN 415
           +  +     R+PLH AA  GH +   +L++  +N+                      +  
Sbjct: 3   NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSE-----------------DQR 45

Query: 416 TALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKD 475
           T L EA  + H                                  ++ L+K G  VD KD
Sbjct: 46  TPLMEAAENNHL-------------------------------EAVKYLIKAGALVDPKD 74

Query: 476 RHGRTAIEIAMAENNVEMVNFLVMNG 501
             G T + +A  + + E+V +L+ NG
Sbjct: 75  AEGSTCLHLAAKKGHYEVVQYLLSNG 100

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 55.9 bits (136), Expect = 7e-09
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 17/84 (20%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409
           LL A+ D    +  G +PLHIAA +   +CV++ L   S+V L++               
Sbjct: 163 LLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNK-------------- 208

Query: 410 LDMNGNTALWEAISSKHHSIFRIL 433
               G T L  A  +        +
Sbjct: 209 ---EGETPLQCASLNSQVWSALQM 229

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 85.7 bits (213), Expect = 1e-18
 Identities = 28/165 (16%), Positives = 56/165 (33%), Gaps = 24/165 (14%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409
           LL + LD    D KG T L+ A   G+ + V + +K    +                   
Sbjct: 81  LLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYG--------------- 125

Query: 410 LDMNGNTALWEAISSKHHSIFRILYHCTAI----SDPYTAGDLLCTAEKRNDMSVMEELV 465
                 T+ + A+     SI              +   +    +    K   + +M  L+
Sbjct: 126 -KTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSC---IHITIKNGHVDMMILLL 181

Query: 466 KYGLNVDSKDRHGRT-AIEIAMAENNVEMVNFLVMNGSDVVGANK 509
            Y  + ++ +       I++A+   ++EM+  L     ++  AN 
Sbjct: 182 DYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL 226

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 80.3 bits (199), Expect = 7e-17
 Identities = 30/184 (16%), Positives = 60/184 (32%), Gaps = 39/184 (21%)

Query: 336 LTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDY 395
           L+  +T  +  L   L ++ D    D  G +  + A +  +   V  LL   +  +L + 
Sbjct: 4   LSRINTWKSKQLKSFLSSK-DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE- 61

Query: 396 IIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAIS----------DPYTA 445
                                 L +A + +   I +IL     +              TA
Sbjct: 62  ------------------NEFPLHQAATLEDTKIVKIL-----LFSGLDDSQFDDKGNTA 98

Query: 446 GDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHG-RTAIEIAMAENNVEMVNFLVMNGSDV 504
              L  A    +M  ++  VK    +    + G +T+   A+  N+V +V++ +      
Sbjct: 99  ---LYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST 155

Query: 505 VGAN 508
               
Sbjct: 156 FDLA 159

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 62.9 bits (154), Expect = 4e-11
 Identities = 18/167 (10%), Positives = 48/167 (28%), Gaps = 34/167 (20%)

Query: 349 ELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIII 408
               + +      +   + +HI    GH + +++LL + ++ +  +              
Sbjct: 146 SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNS------------- 192

Query: 409 LLDMNGNT-ALWEAISSKHHSIFRILYHCTAIS---DPYTAGDLLCTAEKRNDMSVMEEL 464
                     +  AI +K   + + L          + Y+A          +D  + + +
Sbjct: 193 ----LLFIPDIKLAIDNKDIEMLQAL-----FKYDINIYSA---NLENVLLDDAEIAKMI 240

Query: 465 VKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCE 511
           ++  +   S          I       E++     N    +    C 
Sbjct: 241 IEKHVEYKSDSYTKDLD--IVKNNKLDEII---SKNKELRLMYVNCV 282

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 81.3 bits (202), Expect = 2e-18
 Identities = 30/153 (19%), Positives = 59/153 (38%), Gaps = 35/153 (22%)

Query: 361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWE 420
           + +G T LHIA+ KG    V  LL++ S+ +++D+                  G T L E
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDH-----------------AGWTPLHE 49

Query: 421 AISSKHHSIFRILYHCTAIS----------DPYTAGDLLCTAEKRNDMSVMEELVKYGLN 470
           A +  H  +  +L     +              +    L  A K   + +++ L+ YG +
Sbjct: 50  ACNHGHLKVVELL-----LQHKALVNTTGYQNDSP---LHDAAKNGHVDIVKLLLSYGAS 101

Query: 471 VDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSD 503
            ++ +  G   ++    E+   ++     N S 
Sbjct: 102 RNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 57.4 bits (140), Expect = 3e-10
 Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 17/84 (20%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409
           LL+ +   +    +  +PLH AA  GH + V +LL + ++ +  +               
Sbjct: 62  LLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNI-------------- 107

Query: 410 LDMNGNTALWEAISSKHHSIFRIL 433
               G   +         S+  + 
Sbjct: 108 ---FGLRPVDYTDDESMKSLLLLP 128

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 52.0 bits (126), Expect = 3e-08
 Identities = 5/34 (14%), Positives = 14/34 (41%)

Query: 356 DPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
             +  +  G  P+     +  +  +L+  K+ S+
Sbjct: 101 SRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 46.6 bits (112), Expect = 2e-06
 Identities = 14/56 (25%), Positives = 29/56 (51%)

Query: 449 LCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
           L  A  + D+  +E L++ G + + KD  G T +  A    ++++V  L+ + + V
Sbjct: 14  LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 84.4 bits (210), Expect = 3e-18
 Identities = 36/174 (20%), Positives = 63/174 (36%), Gaps = 34/174 (19%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409
            L    D +  D  G T    AA  G  + +  L K  +NV+LR         + +    
Sbjct: 91  FLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK-------TKEDQER 143

Query: 410 LDMNGNTALWEAISSKHHSIFRILYHCTAISDP-----------YTAGDLLCTAEKRNDM 458
           L   G TAL +A    H  + +IL     + +              A   L  A   +D 
Sbjct: 144 LRKGGATALMDAAEKGHVEVLKIL-----LDEMGADVNACDNMGRNA---LIHALLSSDD 195

Query: 459 SVMEELVKY----GLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGAN 508
           S +E +       G +V+ +   G+T + +A+ + ++ +V  L+          
Sbjct: 196 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE----HIE 245

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 82.5 bits (205), Expect = 1e-17
 Identities = 27/157 (17%), Positives = 49/157 (31%), Gaps = 38/157 (24%)

Query: 360 GDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALW 419
              +    L  A      + V  LL+  +NV+ ++                +  G T L 
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE----------------EEGGWTPLH 44

Query: 420 EAISSKHHSIFRIL------------YHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKY 467
            A+      I  +L               T              A     + +++  +  
Sbjct: 45  NAVQMSREDIVELLLRHGADPVLRKKNGATP----------FLLAAIAGSVKLLKLFLSK 94

Query: 468 GLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
           G +V+  D +G TA   A     V+ + FL   G++V
Sbjct: 95  GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 131

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 78.3 bits (194), Expect = 3e-16
 Identities = 36/175 (20%), Positives = 66/175 (37%), Gaps = 40/175 (22%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409
           LL+   DP +    G TP  +AA  G  + + + L   ++V+  D+              
Sbjct: 58  LLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDF-------------- 103

Query: 410 LDMNGNTALWEAISSKHHSIFRIL---------------YHCTAISDPYTAGDLLCTAEK 454
               G TA  EA         + L                         TA   L  A +
Sbjct: 104 ---YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA---LMDAAE 157

Query: 455 RNDMSVMEELV-KYGLNVDSKDRHGRTAIEIAMAENNV----EMVNFLVMNGSDV 504
           +  + V++ L+ + G +V++ D  GR A+  A+  ++      + + L+ +G+DV
Sbjct: 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV 212

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 50.2 bits (121), Expect = 7e-07
 Identities = 9/41 (21%), Positives = 19/41 (46%)

Query: 356 DPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYI 396
           + +  DS G+T L +A     ++   +L K  ++    D +
Sbjct: 245 EINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLV 285

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 47.1 bits (113), Expect = 7e-06
 Identities = 27/127 (21%), Positives = 38/127 (29%), Gaps = 49/127 (38%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLL-KHASNVHLRDYIIFMYNLSYDIII 408
           LL    D ++   +G+TPL +A  K H   V  LL +    ++  D              
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS------------- 251

Query: 409 LLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYG 468
               +G TAL  A+  K   I                                E L K G
Sbjct: 252 ----DGKTALLLAVELKLKKI-------------------------------AELLCKRG 276

Query: 469 LNVDSKD 475
            + D  D
Sbjct: 277 ASTDCGD 283

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 83.3 bits (206), Expect = 4e-18
 Identities = 41/258 (15%), Positives = 81/258 (31%), Gaps = 44/258 (17%)

Query: 284 ALIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGD---------LIAESGEEDGDPNMSVN 334
            L   +     + ++ L  +L+ + K    +            + A    +DG     + 
Sbjct: 5   RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64

Query: 335 LLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
           LL +    ++     L+ A         +G + LHIA  K   +CV +L+++ ++VHLR 
Sbjct: 65  LLQIDK--DSGNPKPLVNA--QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA 120

Query: 395 YIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRIL--------------------Y 434
              F               G   L  A  +K   +   L                     
Sbjct: 121 CGRFFQKHQGT----CFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVL 176

Query: 435 HCTAI----SDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENN 490
           H   +    S   +A   L        + +   L       +  +  G T +++A  E  
Sbjct: 177 HALVMIADNSPENSA---LVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGK 233

Query: 491 VEMVNFLVMNGSDVVGAN 508
           +E+   ++        A+
Sbjct: 234 IEIFRHILQREFSGAAAH 251

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 27/175 (15%), Positives = 54/175 (30%), Gaps = 40/175 (22%)

Query: 364 GRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAIS 423
            R  L    S+G  E +  LL         +Y+ +      D        G T L +A+ 
Sbjct: 2   DRDRLFSVVSRGVPEELTGLL---------EYLRWNSKYLTDSAYTEGSTGKTCLMKAVL 52

Query: 424 SK---HHSIFRILYHCTA--------ISDPYTAGDL-----LCTAEKRNDMSVMEELVKY 467
           +     ++    L             ++   T         L  A ++  +  ++ LV+ 
Sbjct: 53  NLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN 112

Query: 468 GLNVDSKDR-------------HGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509
           G +V  +                G   + +A      ++V +L+ N      A+ 
Sbjct: 113 GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ--PASL 165

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161

 Score = 80.5 bits (199), Expect = 5e-18
 Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 3/155 (1%)

Query: 152 KAESLNQHQLIEQLPKSIC--KSICQHLFLHT-VEKVYLFKDVSKEIIVLLVAKMKAEYI 208
            AE+ N  +  +     I   K+  Q   L    + + LFK++  E +  ++  M  + +
Sbjct: 7   CAEAYNPDEEEDDAESRIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLV 66

Query: 209 PPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYT 268
              E VI Q +  D+ Y+I  G  ++          VG       FGE+  +   P+  T
Sbjct: 67  KEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPRAAT 126

Query: 269 YRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNF 303
               +   L  L        +         + ++F
Sbjct: 127 ITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESF 161

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 82.6 bits (204), Expect = 6e-18
 Identities = 46/207 (22%), Positives = 79/207 (38%), Gaps = 24/207 (11%)

Query: 335 LLTVASTGNAAFLDELL---KARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVH 391
           +  +A +G    L E +   K+       D   RT LH A S GH E V  LL+    V+
Sbjct: 10  ICNLAYSGKLDELKERILADKS--LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 67

Query: 392 LRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILY-HCTAISDPYTAGDL-L 449
            +D                   G + L  A S+    I + L      ++     G   L
Sbjct: 68  DKDD-----------------AGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPL 110

Query: 450 CTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509
             A  +N   +   L++ G N D+KD +  TA+  A A+ N++MV+ L+   +     + 
Sbjct: 111 HYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDT 170

Query: 510 CEFSSTNLNDMLQKREIGHRITVHDDN 536
              +  +L    ++ E    +     +
Sbjct: 171 EGNTPLHLACDEERVEEAKFLVTQGAS 197

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 69.9 bits (171), Expect = 1e-13
 Identities = 34/168 (20%), Positives = 68/168 (40%), Gaps = 21/168 (12%)

Query: 339 ASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIF 398
           AS G    +  LL      +  +  G TPLH AASK   E  ++LL+  +N   +D+   
Sbjct: 81  ASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH--- 137

Query: 399 MYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILY-HCTAISDPYTAGDL-LCTAEKRN 456
                            TA+  A +  +  +  IL  +  + +   T G+  L  A    
Sbjct: 138 --------------YDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEE 183

Query: 457 DMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
            +   + LV  G ++  +++  +T +++A  +  + ++   +  G + 
Sbjct: 184 RVEEAKFLVTQGASIYIENKEEKTPLQVA--KGGLGLILKRLAEGEEA 229

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 66.8 bits (163), Expect = 1e-12
 Identities = 27/183 (14%), Positives = 63/183 (34%), Gaps = 35/183 (19%)

Query: 364 GRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAIS 423
                ++A S   +E    +L   S     D                  +  TAL  A S
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATRTDQ-----------------DSRTALHWACS 49

Query: 424 SKHHSIFRILYHCTAIS----------DPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDS 473
           + H  I   L     +             ++    L  A       +++ L+  G +V++
Sbjct: 50  AGHTEIVEFL-----LQLGVPVNDKDDAGWSP---LHIAASAGXDEIVKALLVKGAHVNA 101

Query: 474 KDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVH 533
            +++G T +  A ++N  E+   L+  G++    +  + ++ +        ++ H +  +
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161

Query: 534 DDN 536
             +
Sbjct: 162 KAS 164

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 16/70 (22%), Positives = 34/70 (48%)

Query: 325 EDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLL 384
           +  D   +  +   A+ GN   +  LL  +   +I D++G TPLH+A  +   E    L+
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192

Query: 385 KHASNVHLRD 394
              +++++ +
Sbjct: 193 TQGASIYIEN 202

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 82.5 bits (205), Expect = 7e-18
 Identities = 29/163 (17%), Positives = 50/163 (30%), Gaps = 35/163 (21%)

Query: 356 DPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGN 415
           D D     G TPL +AA    E  +  L+   ++V+  D                   G 
Sbjct: 116 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD-----------------LGK 158

Query: 416 TALWEAISSKHHSIFRILYHCTAIS----------DPYTAGDLLCTAEKRNDMSVMEELV 465
           +AL  A +  +     +L     +              T    L  A +       + L+
Sbjct: 159 SALHWAAAVNNVDAAVVL-----LKNGANKDMQNNREETP---LFLAAREGSYETAKVLL 210

Query: 466 KYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGAN 508
            +  N D  D   R   +IA    + ++V  L +        +
Sbjct: 211 DHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHHH 253

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 80.6 bits (200), Expect = 3e-17
 Identities = 35/156 (22%), Positives = 63/156 (40%), Gaps = 49/156 (31%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKH-ASNVHLRDYIIFMYNLSYDIII 408
           LL+A  D +I D+ GRTPLH A S   +    +L+++ A+++  R +             
Sbjct: 76  LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH------------- 122

Query: 409 LLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYG 468
               +G T L                   A               +     ++E+L+   
Sbjct: 123 ----DGTTPL----------------ILAA---------------RLAVEGMLEDLINSH 147

Query: 469 LNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
            +V++ D  G++A+  A A NNV+    L+ NG++ 
Sbjct: 148 ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 183

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 64.0 bits (157), Expect = 1e-11
 Identities = 24/149 (16%), Positives = 45/149 (30%), Gaps = 38/149 (25%)

Query: 355 LDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSY--DIIILLDM 412
           +D ++    G TPL IA+  G         +      +    I          +    D 
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFI-----YQGASLHNQTDR 55

Query: 413 NGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVD 472
            G TAL                H  A               + +     + L++   + +
Sbjct: 56  TGETAL----------------HLAA---------------RYSRSDAAKRLLEASADAN 84

Query: 473 SKDRHGRTAIEIAMAENNVEMVNFLVMNG 501
            +D  GRT +  A++ +   +   L+ N 
Sbjct: 85  IQDNMGRTPLHAAVSADAQGVFQILIRNR 113

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 54.0 bits (131), Expect = 3e-08
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 17/84 (20%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409
           LLK   + D+ +++  TPL +AA +G  E   VLL H +N  + D+              
Sbjct: 176 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDH-------------- 221

Query: 410 LDMNGNTALWEAISSKHHSIFRIL 433
                      A    HH I R+L
Sbjct: 222 ---MDRLPRDIAQERMHHDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 45.9 bits (110), Expect = 1e-05
 Identities = 13/42 (30%), Positives = 18/42 (42%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVH 391
           LL    + DI D   R P  IA  + H + V +L     + H
Sbjct: 209 LLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 82.5 bits (204), Expect = 1e-17
 Identities = 41/253 (16%), Positives = 83/253 (32%), Gaps = 36/253 (14%)

Query: 281 KTSALIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGD--------LIAESGEEDGDPNMS 332
           + S      QS  ++  S+L    +  K+L D    D        L A     +G  +  
Sbjct: 14  RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTI 73

Query: 333 VNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHL 392
             LL VA   ++  L + + A         KG+T LHIA  + +   V +L+++ ++V  
Sbjct: 74  ALLLDVARKTDS--LKQFVNA--SYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA 129

Query: 393 RDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRI-------------------- 432
                F               G   L  A  +   +I +                     
Sbjct: 130 AANGDFFKKTKGR---PGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNT 186

Query: 433 -LYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNV 491
            L+    ++D         T+     + +  +L       +  +R G T + +A +   +
Sbjct: 187 VLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKI 246

Query: 492 EMVNFLVMNGSDV 504
            ++ +++      
Sbjct: 247 GVLAYILQREIHE 259

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 67.5 bits (165), Expect = 1e-12
 Identities = 33/200 (16%), Positives = 57/200 (28%), Gaps = 62/200 (31%)

Query: 335 LLTVASTGNAAFLDELLKARL-------DPDIGDSK-GRTPLHIA---ASKGHEECVLVL 383
           +    +  N   L+ LL           D +  D + G+T L  A      G  + + +L
Sbjct: 17  IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALL 76

Query: 384 LKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPY 443
           L  A         +                G TAL  AI                     
Sbjct: 77  LDVARKTDSLKQFVN------ASYTDSYYKGQTALHIAI--------------------- 109

Query: 444 TAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDR--------------HGRTAIEIAMAEN 489
                     +R +M+++  LV+ G +V +                  G   + +A   N
Sbjct: 110 ----------ERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN 159

Query: 490 NVEMVNFLVMNGSDVVGANK 509
            + +V FL+ N       + 
Sbjct: 160 QLAIVKFLLQNSWQPADISA 179

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 30/152 (19%), Positives = 46/152 (30%), Gaps = 38/152 (25%)

Query: 284 ALIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGD--------LIAESGEEDGDPNMSVNL 335
            L  A  + Q   V  L   LQ   +  D++  D         + E  +   D    V  
Sbjct: 151 PLSLAACTNQLAIVKFL---LQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTS 207

Query: 336 LTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDY 395
           +        A L   LK     +I + KG TPL +AAS G    +  +L+          
Sbjct: 208 MYNEILILGAKLHPTLK---LEEITNRKGLTPLALAASSGKIGVLAYILQR--------- 255

Query: 396 IIFMYNLSYDIIILLDMNGNTALWEAISSKHH 427
                          +++       A    HH
Sbjct: 256 ---------------EIHEPECRHAAAHHHHH 272

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 79.7 bits (198), Expect = 1e-17
 Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 35/159 (22%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409
           L+    D +  D+ G TPLH+AA  GH E V VLLK+ ++V+  D+              
Sbjct: 33  LMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH-------------- 78

Query: 410 LDMNGNTALWEAISSKHHSIFRILYHCTAIS----------DPYTAGDLLCTAEKRNDMS 459
               G T L  A    H  I  +L     +           + +T    L  A     + 
Sbjct: 79  ---AGMTPLRLAALFGHLEIVEVL-----LKNGADVNANDMEGHTP---LHLAAMFGHLE 127

Query: 460 VMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLV 498
           ++E L+K G +V+++D+ G+TA +I++   N ++   L 
Sbjct: 128 IVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 68.2 bits (168), Expect = 1e-13
 Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 48/144 (33%)

Query: 361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWE 420
            S     L  AA  G ++ V +L+ + ++V+  D                  +G T L  
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDA-----------------SGWTPLHL 53

Query: 421 AISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRT 480
           A  + H                                 ++E L+K G +V++ D  G T
Sbjct: 54  AAFNGHLE-------------------------------IVEVLLKNGADVNAVDHAGMT 82

Query: 481 AIEIAMAENNVEMVNFLVMNGSDV 504
            + +A    ++E+V  L+ NG+DV
Sbjct: 83  PLRLAALFGHLEIVEVLLKNGADV 106

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 45.8 bits (110), Expect = 6e-06
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKH 386
           LLK   D +  D  G+T   I+   G+E+   +L K 
Sbjct: 132 LLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 80.9 bits (201), Expect = 1e-17
 Identities = 35/156 (22%), Positives = 63/156 (40%), Gaps = 49/156 (31%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKH-ASNVHLRDYIIFMYNLSYDIII 408
           LL+A  D +I D+ GRTPLH A S   +    +L+++ A+++  R +             
Sbjct: 44  LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH------------- 90

Query: 409 LLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYG 468
               +G T L                   A               +     ++E+L+   
Sbjct: 91  ----DGTTPL----------------ILAA---------------RLAVEGMLEDLINSH 115

Query: 469 LNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
            +V++ D  G++A+  A A NNV+    L+ NG++ 
Sbjct: 116 ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 151

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 74.8 bits (185), Expect = 2e-15
 Identities = 28/149 (18%), Positives = 47/149 (31%), Gaps = 48/149 (32%)

Query: 356 DPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGN 415
           D D     G TPL +AA    E  +  L+   ++V+  D                   G 
Sbjct: 84  DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD-----------------LGK 126

Query: 416 TALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKD 475
           +AL                H  A                 N++     L+K G N D ++
Sbjct: 127 SAL----------------HWAA---------------AVNNVDAAVVLLKNGANKDMQN 155

Query: 476 RHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
               T + +A  E + E    L+ + ++ 
Sbjct: 156 NREETPLFLAAREGSYETAKVLLDHFANR 184

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 43.2 bits (103), Expect = 8e-05
 Identities = 16/127 (12%), Positives = 36/127 (28%), Gaps = 47/127 (37%)

Query: 375 GHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILY 434
                +   +   +++H +                 D  G TAL                
Sbjct: 2   DAPAVISDFIYQGASLHNQT----------------DRTGETAL---------------- 29

Query: 435 HCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMV 494
           H  A               + +     + L++   + + +D  GRT +  A++ +   + 
Sbjct: 30  HLAA---------------RYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVF 74

Query: 495 NFLVMNG 501
             L+ N 
Sbjct: 75  QILIRNR 81

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 79.0 bits (196), Expect = 2e-17
 Identities = 29/151 (19%), Positives = 57/151 (37%), Gaps = 36/151 (23%)

Query: 361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWE 420
           + +  TPLH AA       V  LL+H ++VH +D                   G   L  
Sbjct: 39  EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK-----------------GGLVPLHN 81

Query: 421 AISSKHHSIFRILYHCTAIS----------DPYTAGDLLCTAEKRNDMSVMEELVKYGLN 470
           A S  H+ +  +L     +             +T    L  A  +    + + L+++G +
Sbjct: 82  ACSYGHYEVAELL-----VKHGAVVNVADLWKFTP---LHEAAAKGKYEICKLLLQHGAD 133

Query: 471 VDSKDRHGRTAIEIAMAENNVEMVNFLVMNG 501
              K+R G T +++   + + ++ + L  + 
Sbjct: 134 PTKKNRDGNTPLDLV-KDGDTDIQDLLRGDA 163

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 67.0 bits (165), Expect = 3e-13
 Identities = 29/145 (20%), Positives = 48/145 (33%), Gaps = 49/145 (33%)

Query: 361 DSKGRTPLHIAASKGHEECVLVLL-KHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALW 419
           +S+    L  AA  G  E V  L    + N    +                    +T L 
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEG-----------------RQSTPL- 46

Query: 420 EAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGR 479
                          H  A                 N +SV+E L+++G +V +KD+ G 
Sbjct: 47  ---------------HFAA---------------GYNRVSVVEYLLQHGADVHAKDKGGL 76

Query: 480 TAIEIAMAENNVEMVNFLVMNGSDV 504
             +  A +  + E+   LV +G+ V
Sbjct: 77  VPLHNACSYGHYEVAELLVKHGAVV 101

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 17/69 (24%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409
           L+K     ++ D    TPLH AA+KG  E   +LL+H ++   ++               
Sbjct: 94  LVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNR-------------- 139

Query: 410 LDMNGNTAL 418
              +GNT L
Sbjct: 140 ---DGNTPL 145

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 78.6 bits (195), Expect = 2e-17
 Identities = 37/147 (25%), Positives = 57/147 (38%), Gaps = 35/147 (23%)

Query: 361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWE 420
           D  G +PLH+AA  GH     VLL+   +   R                      T L  
Sbjct: 31  DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK-----------------VDRTPLHM 73

Query: 421 AISSKHHSIFRILYHCTAIS----------DPYTAGDLLCTAEKRNDMSVMEELVKYGLN 470
           A S  H +I  +L     +              TA   L  A + N   V+E L+KYG +
Sbjct: 74  AASEGHANIVEVL-----LKHGADVNAKDMLKMTA---LHWATEHNHQEVVELLIKYGAD 125

Query: 471 VDSKDRHGRTAIEIAMAENNVEMVNFL 497
           V ++ +  +TA +I++   N ++   L
Sbjct: 126 VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 64.3 bits (158), Expect = 2e-12
 Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 49/141 (34%)

Query: 364 GRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAIS 423
               L  AA  G ++ V +L+ + +                      D  G + L     
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTT------------------DWLGTSPL----- 38

Query: 424 SKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIE 483
                      H  A               +    S  E L++ G++ D++ +  RT + 
Sbjct: 39  -----------HLAA---------------QYGHFSTTEVLLRAGVSRDARTKVDRTPLH 72

Query: 484 IAMAENNVEMVNFLVMNGSDV 504
           +A +E +  +V  L+ +G+DV
Sbjct: 73  MAASEGHANIVEVLLKHGADV 93

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 53.2 bits (129), Expect = 1e-08
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 17/78 (21%)

Query: 356 DPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGN 415
           D +  D    T LH A    H+E V +L+K+ ++VH +                      
Sbjct: 92  DVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK-----------------FCK 134

Query: 416 TALWEAISSKHHSIFRIL 433
           TA   +I + +  +  IL
Sbjct: 135 TAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 39.7 bits (94), Expect = 6e-04
 Identities = 8/34 (23%), Positives = 14/34 (41%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVL 383
           L+K   D        +T   I+   G+E+   +L
Sbjct: 119 LIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 80.6 bits (200), Expect = 3e-17
 Identities = 30/160 (18%), Positives = 50/160 (31%), Gaps = 35/160 (21%)

Query: 356 DPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGN 415
           D    D +  T LH AA     + V   +   + V                        +
Sbjct: 34  DVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG----------------GDLNS 77

Query: 416 TALWEAISSKHHSIFRILYHCTAIS---DP-------YTAGDLLCTAEKRNDMSVMEELV 465
           T L  A    H S+   L     +    DP        +    +  A +    S++  L+
Sbjct: 78  TPLHWATRQGHLSMVVQL-----MKYGADPSLIDGEGCSC---IHLAAQFGHTSIVAYLI 129

Query: 466 KYGLNVDSKDRHGRTAIEIAMAENN-VEMVNFLVMNGSDV 504
             G +VD  D++G T +  A    + V+    L+     V
Sbjct: 130 AKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV 169

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 79.4 bits (197), Expect = 7e-17
 Identities = 27/153 (17%), Positives = 48/153 (31%), Gaps = 26/153 (16%)

Query: 358 DIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTA 417
              D      +  A   G  E    L++   +V   D                     T 
Sbjct: 3   THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDK-----------------ENVTL 45

Query: 418 LWEAISSKHHSIFRILY------HCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNV 471
           L  A  +    + +                  T    L  A ++  +S++ +L+KYG + 
Sbjct: 46  LHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP---LHWATRQGHLSMVVQLMKYGADP 102

Query: 472 DSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
              D  G + I +A    +  +V +L+  G DV
Sbjct: 103 SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 78.2 bits (194), Expect = 2e-16
 Identities = 32/156 (20%), Positives = 58/156 (37%), Gaps = 48/156 (30%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409
           L+K   DP + D +G + +H+AA  GH   V  L+    +V + D               
Sbjct: 95  LMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQ-------------- 140

Query: 410 LDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGL 469
              NG T L  A                              A + + +     L+ + +
Sbjct: 141 ---NGMTPLMWA------------------------------AYRTHSVDPTRLLLTFNV 167

Query: 470 NVDSKDR-HGRTAIEIAMAENNVEMVNFLVMNGSDV 504
           +V+  D+ H  TA+  A+   N  +++ L+  G++V
Sbjct: 168 SVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV 203

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 79.4 bits (197), Expect = 3e-17
 Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 35/162 (21%)

Query: 353 ARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDM 412
                +  DS  RTPL +A   G E  +  L+++   +  +D                  
Sbjct: 24  LDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDI----------------- 66

Query: 413 NGNTALWEAISSKHHSIFRILYHCTAIS----------DPYTAGDLLCTAEKRNDMSVME 462
            G+TAL  A+ +    I   L     +S             T    L  +       +  
Sbjct: 67  EGSTALIWAVKNNRLGIAEKL-----LSKGSNVNTKDFSGKTP---LMWSIIFGYSEMSY 118

Query: 463 ELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
            L+++G NV+ ++  G T + +A      E+V  L+  G+D+
Sbjct: 119 FLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI 160

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 76.7 bits (190), Expect = 2e-16
 Identities = 28/153 (18%), Positives = 51/153 (33%), Gaps = 35/153 (22%)

Query: 356 DPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGN 415
             +  D +G T L  A           LL   SNV+ +D+                 +G 
Sbjct: 60  KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF-----------------SGK 102

Query: 416 TALWEAISSKHHSIFRILYHCTAIS----------DPYTAGDLLCTAEKRNDMSVMEELV 465
           T L  +I   +  +   L     +           +  T    L  A K     ++++L+
Sbjct: 103 TPLMWSIIFGYSEMSYFL-----LEHGANVNDRNLEGETP---LIVASKYGRSEIVKKLL 154

Query: 466 KYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLV 498
           + G ++ ++D  G TA   A      E++    
Sbjct: 155 ELGADISARDLTGLTAEASARIFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 63.6 bits (156), Expect = 8e-12
 Identities = 31/154 (20%), Positives = 51/154 (33%), Gaps = 41/154 (26%)

Query: 361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWE 420
           D  G     I   K   + +  L  +                        D    T L  
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFLRNYR-----------------------DSYNRTPLMV 41

Query: 421 AISSKHHSIFRILYHCTAIS----------DPYTAGDLLCTAEKRNDMSVMEELVKYGLN 470
           A      +    L     +           +  TA   L  A K N + + E+L+  G N
Sbjct: 42  ACMLGMENAIDKL-----VENFDKLEDKDIEGSTA---LIWAVKNNRLGIAEKLLSKGSN 93

Query: 471 VDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
           V++KD  G+T +  ++     EM  FL+ +G++V
Sbjct: 94  VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANV 127

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 42.8 bits (102), Expect = 1e-04
 Identities = 7/31 (22%), Positives = 11/31 (35%)

Query: 356 DPDIGDSKGRTPLHIAASKGHEECVLVLLKH 386
           D    D  G T    A   G +E + +  + 
Sbjct: 159 DISARDLTGLTAEASARIFGRQEVIKIFTEV 189

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416

 Score = 83.3 bits (205), Expect = 3e-17
 Identities = 32/178 (17%), Positives = 65/178 (36%), Gaps = 5/178 (2%)

Query: 153 AESLNQHQLIEQLPKSIC--KSICQ-HLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIP 209
           AE+ N  +  +     I   K+  Q +      + + LFK++  E +  ++  M  + + 
Sbjct: 115 AEAYNPDEEEDDAESRIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVK 174

Query: 210 PREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTY 269
             E VI Q +  D+ Y+I  G  ++          VG       FGE+  +   P+  T 
Sbjct: 175 EGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPKAATI 234

Query: 270 RTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDL--IAESGEE 325
              +   L  L        +         + ++F++    LK L + +   + +    
Sbjct: 235 TATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESLPFLKSLEVSERLKVVDVIGT 292

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416

 Score = 68.6 bits (167), Expect = 1e-12
 Identities = 28/175 (16%), Positives = 64/175 (36%), Gaps = 11/175 (6%)

Query: 155 SLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDV 214
            L++      + K+  K    +     +E +   K +     + +V  +  +     E +
Sbjct: 244 GLDRVTFRRIIVKNNAKKRKMYESF--IESLPFLKSLEVSERLKVVDVIGTKVYNDGEQI 301

Query: 215 IMQNEAPDDVYIIVSGEVEMI-------DYEMEKEIAVGTLQTGDMFGEVGALCCRPQIY 267
           I Q +  D  +I+ SGEV++        + E    + +     G  FGE+  +  +P+  
Sbjct: 302 IAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFGELALVTNKPRAA 361

Query: 268 TYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKL--KDLNIGDLIA 320
           +       + L +   A    +    E     +  + +Q   L   +++I +  A
Sbjct: 362 SAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYEEQLVALFGTNMDIVEPTA 416

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 80.0 bits (198), Expect = 4e-17
 Identities = 37/193 (19%), Positives = 65/193 (33%), Gaps = 38/193 (19%)

Query: 335 LLTVASTGNAAFLDELLKAR-LDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLR 393
           LL  A   +   L +LLK    +     + G T LHIAA   + E  +VL++ A  +   
Sbjct: 7   LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE 66

Query: 394 DYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRIL------------------YH 435
                               G TAL  A+ +++ ++ R L                    
Sbjct: 67  P-----MTSE-------LYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRP 114

Query: 436 CTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMV- 494
              I         L  A       ++  L+++G ++ ++D  G T + I + + N     
Sbjct: 115 HNLIYYGEHP---LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFAC 171

Query: 495 ---NFLVMNGSDV 504
              N L+      
Sbjct: 172 QMYNLLLSYDGGD 184

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 68.8 bits (169), Expect = 3e-13
 Identities = 29/163 (17%), Positives = 46/163 (28%), Gaps = 50/163 (30%)

Query: 348 DELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDII 407
                    P      G  PL  AA  G EE V +L++H +++  +D             
Sbjct: 105 ATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDS------------ 152

Query: 408 ILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKY 467
                 GNT L   I   + +    +Y                             L+ Y
Sbjct: 153 -----LGNTVLHILILQPNKTFACQMY---------------------------NLLLSY 180

Query: 468 GLNVDSK------DRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
                 K      +  G T  ++A  E N+ M   L+     +
Sbjct: 181 DGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI 223

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 62.2 bits (152), Expect = 4e-11
 Identities = 30/167 (17%), Positives = 57/167 (34%), Gaps = 48/167 (28%)

Query: 364 GRTPLHIAASKGHEECVLVLLK-HASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAI 422
             +PL +AA +   + +  LLK     VH R                    G TAL  A 
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGA-----------------MGETALHIAA 45

Query: 423 SSKHHSIFRILYHCTAIS-------DPYTAGDL-----LCTAEKRNDMSVMEELVKYGLN 470
              +     +L     +        +P T+        L  A    +++++  L+  G +
Sbjct: 46  LYDNLEAAMVL-----MEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGAS 100

Query: 471 VDSKDR-------------HGRTAIEIAMAENNVEMVNFLVMNGSDV 504
           V ++               +G   +  A    + E+V  L+ +G+D+
Sbjct: 101 VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI 147

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 47.2 bits (113), Expect = 4e-06
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 448 LLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGA 507
           LL  A++ +  ++ + L   G  V  +   G TA+ IA   +N+E    L+    ++V  
Sbjct: 7   LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE 66

Query: 508 NK 509
             
Sbjct: 67  PM 68

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 80.5 bits (198), Expect = 1e-16
 Identities = 41/202 (20%), Positives = 71/202 (35%), Gaps = 39/202 (19%)

Query: 347 LDELLKARLDPDI-GDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIF------- 398
            D     +L+ +I  D  G TPLH   S  + E V  L+KH SN    D +         
Sbjct: 113 NDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAV 172

Query: 399 MYNLSYD------IIILL-------DMNGNTALWEAI--SSKHHSIFRILYHCTAI---- 439
               +YD      ++  L       D    T L   I  S          Y+   +    
Sbjct: 173 KSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWI 232

Query: 440 ------------SDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMA 487
                       ++  +  +      K + +  ++        ++++D +G T + IA  
Sbjct: 233 VKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAAR 292

Query: 488 ENNVEMVNFLVMNGSDVVGANK 509
             N+ +V+ L+  G+D   ANK
Sbjct: 293 LGNISIVDALLDYGADPFIANK 314

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 2/107 (1%)

Query: 288 AMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFL 347
            + S      +  K +L              I      +   +   +            L
Sbjct: 209 IITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSG--TNEKESKPNDKNGERKDSILENL 266

Query: 348 DELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
           D         +  DS G T L+IAA  G+   V  LL + ++  + +
Sbjct: 267 DLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIAN 313

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 18/158 (11%)

Query: 340 STGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFM 399
            +G    L + L       + DS  RT LH               K+    +L   + ++
Sbjct: 179 DSGTFEALLDYLYP--CLILEDSMNRTILHHIIITSGMTGCSAAAKY----YLDILMGWI 232

Query: 400 YNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--------YTAGDLLCT 451
                  I        +   +    +  SI   L     I++          T    L  
Sbjct: 233 VKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTC---LNI 289

Query: 452 AEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAEN 489
           A +  ++S+++ L+ YG +    ++ G   ++   A  
Sbjct: 290 AARLGNISIVDALLDYGADPFIANKSGLRPVDFG-AGL 326

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 75.9 bits (188), Expect = 2e-16
 Identities = 32/171 (18%), Positives = 63/171 (36%), Gaps = 51/171 (29%)

Query: 335 LLTVASTGNAAFLDELL-KARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLR 393
           L   A+ G+   +  LL +  + PD  +  G+T L +    G     L LLK  ++ +++
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQ 64

Query: 394 DYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAE 453
           D                  +G + + +A  +                             
Sbjct: 65  DT-----------------SGTSPVHDAARTGF--------------------------- 80

Query: 454 KRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
               +  ++ LV++G +V+  D  G   I +A+ E +  +V+FL    SD+
Sbjct: 81  ----LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDL 126

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 73.2 bits (181), Expect = 2e-15
 Identities = 32/163 (19%), Positives = 60/163 (36%), Gaps = 49/163 (30%)

Query: 336 LTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDY 395
           L V   G+ A   ELLK    P++ D+ G +P+H AA  G  + + VL++H ++V++ D 
Sbjct: 40  LQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG 99

Query: 396 IIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKR 455
                             G   +  A+   H ++   L      +               
Sbjct: 100 -----------------TGALPIHLAVQEGHTAVVSFL-----AA--------------- 122

Query: 456 NDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLV 498
                         ++  +D  G T +E+A+     ++V+ L 
Sbjct: 123 ------------ESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 62.8 bits (154), Expect = 6e-12
 Identities = 23/143 (16%), Positives = 43/143 (30%), Gaps = 50/143 (34%)

Query: 363 KGRTPLHIAASKGHEECVLVLL-KHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEA 421
           +    L  AA++G  + V  LL +   +    +                   G TAL   
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNR-----------------FGKTAL--- 40

Query: 422 ISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTA 481
                                                ++  EL+K G + + +D  G + 
Sbjct: 41  -------------QVMM----------------FGSTAIALELLKQGASPNVQDTSGTSP 71

Query: 482 IEIAMAENNVEMVNFLVMNGSDV 504
           +  A     ++ +  LV +G+DV
Sbjct: 72  VHDAARTGFLDTLKVLVEHGADV 94

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 51.6 bits (125), Expect = 5e-08
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 349 ELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKH 386
             L A  D    D++G TPL +A  +G ++ V +L  H
Sbjct: 118 SFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299

 Score = 78.0 bits (192), Expect = 5e-16
 Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 9/175 (5%)

Query: 153 AESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPRE 212
            E     Q   +  KS      + L    +      K++    I  +V  M         
Sbjct: 15  IEGRGSMQAFRKFTKS---ERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDS 71

Query: 213 DVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTK 272
            +I + +    VY++  G+VE+      + + + T+  G +FGE+  L    +  T +T 
Sbjct: 72  CIIKEGDVGSLVYVMEDGKVEVTK----EGVKLCTMGPGKVFGELAILYNCTRTATVKTL 127

Query: 273 TLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDL--IAESGEE 325
              +L  +        M        +    FL+     + L    L  +A+  EE
Sbjct: 128 VNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKSVPTFQSLPEEILSKLADVLEE 182

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299

 Score = 72.3 bits (177), Expect = 4e-14
 Identities = 24/143 (16%), Positives = 51/143 (35%), Gaps = 2/143 (1%)

Query: 174 CQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVE 233
               ++  ++ V  F+ + +EI+  L   ++  +    E +I Q    D  +II  G+V 
Sbjct: 151 KHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVN 210

Query: 234 MI--DYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQS 291
           +   D   E  + + TL  GD FGE        +            L +   +    +  
Sbjct: 211 VTREDSPNEDPVFLRTLGKGDWFGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGG 270

Query: 292 KQEDNVSILKNFLQQHKKLKDLN 314
             + +    ++   + K   +  
Sbjct: 271 LDDVSNKAYEDAEAKAKYEAEAA 293

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 73.5 bits (182), Expect = 6e-16
 Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 35/148 (23%)

Query: 364 GRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAIS 423
           GRTPLH+AA  GH E V +LL+  ++V+ +D                  NG T L  A  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-----------------NGRTPLHLAAR 44

Query: 424 SKHHSIFRILYHCTAIS----------DPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDS 473
           + H  + ++L     +           +  T    L  A +   + V++ L++ G +V++
Sbjct: 45  NGHLEVVKLL-----LEAGADVNAKDKNGRTP---LHLAARNGHLEVVKLLLEAGADVNA 96

Query: 474 KDRHGRTAIEIAMAENNVEMVNFLVMNG 501
           KD++GRT + +A    ++E+V  L+  G
Sbjct: 97  KDKNGRTPLHLAARNGHLEVVKLLLEAG 124

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 43.1 bits (103), Expect = 2e-05
 Identities = 18/56 (32%), Positives = 36/56 (64%)

Query: 449 LCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
           L  A +   + V++ L++ G +V++KD++GRT + +A    ++E+V  L+  G+DV
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 78.1 bits (193), Expect = 9e-16
 Identities = 36/172 (20%), Positives = 64/172 (37%), Gaps = 41/172 (23%)

Query: 356 DPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGN 415
           D +  D    TPL +A        V  L+K  ++  + +                  +  
Sbjct: 158 DVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNK-----------------SER 200

Query: 416 TALWEAISSKHHSIFRIL-YHCTAISDP-------YTAGDLLCTAEK--RNDMSVMEELV 465
           +AL +A +++   +   +        D         TA  L+  A    R+ ++  + LV
Sbjct: 201 SALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTA--LMIVAHNEGRDQVASAKLLV 258

Query: 466 KYGLNV--------DSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509
           + G  V        DS+   GRTA+  A   +N+ +V +LV       G+NK
Sbjct: 259 EKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE----KGSNK 306

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 70.0 bits (172), Expect = 4e-13
 Identities = 29/216 (13%), Positives = 60/216 (27%), Gaps = 44/216 (20%)

Query: 289 MQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLD 348
           M++++++  +       QH  L+    G +  +    +               GN    D
Sbjct: 21  MENEEKNRKNHQSITSSQHSLLEASYDGYI--KRQRNELQHYSLYPNPQGYGNGNDFLGD 78

Query: 349 ELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIII 408
                   P   + +    LH  A  G       + + + N+                  
Sbjct: 79  FNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNIIDPR-------------- 123

Query: 409 LLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYG 468
               +  T L    S+        L     I                      +E +  G
Sbjct: 124 ----HNRTVLHWIASNSSAEKSEDL-----IVH------------------EAKECIAAG 156

Query: 469 LNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
            +V++ D    T + +A+      +V +L+  G+D 
Sbjct: 157 ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP 192

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 67.7 bits (166), Expect = 3e-12
 Identities = 28/158 (17%), Positives = 47/158 (29%), Gaps = 49/158 (31%)

Query: 348 DELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHA-SNVHLRDYIIFMYNLSYDI 406
                     D    KGRT LH AA   +   V  L+    SN   +D            
Sbjct: 263 KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE----------- 311

Query: 407 IILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVK 466
                 +G T +                   A               +   + V+  L++
Sbjct: 312 ------DGKTPI----------------MLAA---------------QEGRIEVVMYLIQ 334

Query: 467 YGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
            G +V++ D    TA ++A A N+  +V+       + 
Sbjct: 335 QGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 5/96 (5%), Positives = 19/96 (19%), Gaps = 8/96 (8%)

Query: 413 NGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVD 472
           +   +L EA    +    R                         +  + +          
Sbjct: 36  SSQHSLLEASYDGYIKRQRNELQ----HYSLYP---NPQGYGNGNDFLGDFNHTNLQIPT 88

Query: 473 SKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGAN 508
             +      +    A  +  +   +     +++   
Sbjct: 89  EPEPESPIKLHTE-AAGSYAITEPITRESVNIIDPR 123

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 76.1 bits (188), Expect = 1e-15
 Identities = 32/150 (21%), Positives = 53/150 (35%), Gaps = 24/150 (16%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409
           ++    DP + + +G T LH A   GH E V  L++   NV+  D               
Sbjct: 56  IIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS-------------- 101

Query: 410 LDMNGNTALWEAISSKHHSIFRILYHCTA------ISDPYTAGDLLCTAEKRNDMSVMEE 463
              +G T L  A S  +  + + L    A       SD  TA D  C   +       + 
Sbjct: 102 ---DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAAD-KCEEMEEGYTQCSQF 157

Query: 464 LVKYGLNVDSKDRHGRTAIEIAMAENNVEM 493
           L      +   ++    A+     +N+ E+
Sbjct: 158 LYGVQEKMGIMNKGVIYALWDYEPQNDDEL 187

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 73.8 bits (182), Expect = 6e-15
 Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 48/144 (33%)

Query: 361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWE 420
           +      L  ++ +G  + V  ++    +  L +                   G TAL  
Sbjct: 34  NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPND-----------------EGITALHN 76

Query: 421 AISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRT 480
           A+ + H                                 +++ LV++G+NV++ D  G T
Sbjct: 77  AVCAGHTE-------------------------------IVKFLVQFGVNVNAADSDGWT 105

Query: 481 AIEIAMAENNVEMVNFLVMNGSDV 504
            +  A + NNV++  FLV +G+ V
Sbjct: 106 PLHCAASCNNVQVCKFLVESGAAV 129

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 68.4 bits (168), Expect = 4e-13
 Identities = 16/144 (11%), Positives = 34/144 (23%), Gaps = 49/144 (34%)

Query: 361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWE 420
           +  G+  L         +     + H   V                           L  
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP------------------LPLALL-- 41

Query: 421 AISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRT 480
                                          +    +  +++ ++    +    +  G T
Sbjct: 42  --------------LD---------------SSLEGEFDLVQRIIYEVDDPSLPNDEGIT 72

Query: 481 AIEIAMAENNVEMVNFLVMNGSDV 504
           A+  A+   + E+V FLV  G +V
Sbjct: 73  ALHNAVCAGHTEIVKFLVQFGVNV 96

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 4/67 (5%)

Query: 443 YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGS 502
             +   L   ++ N      E + +G+ V          +  +  E   ++V  ++    
Sbjct: 6   QVS---LPPGKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEGEFDLVQRIIYEVD 61

Query: 503 DVVGANK 509
           D    N 
Sbjct: 62  DPSLPND 68

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 72.0 bits (178), Expect = 2e-15
 Identities = 34/147 (23%), Positives = 52/147 (35%), Gaps = 48/147 (32%)

Query: 358 DIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTA 417
             G   G TPLH AA  GH E V  LL   ++V+ R                   +GNT 
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSK-----------------DGNTP 45

Query: 418 LWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRH 477
           L  A  + H                                 +++ L+  G +V+++ + 
Sbjct: 46  LHLAAKNGHA-------------------------------EIVKLLLAKGADVNARSKD 74

Query: 478 GRTAIEIAMAENNVEMVNFLVMNGSDV 504
           G T   +A    + E+V  L   G+DV
Sbjct: 75  GNTPEHLAKKNGHHEIVKLLDAKGADV 101

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 57.0 bits (139), Expect = 2e-10
 Identities = 27/132 (20%), Positives = 42/132 (31%), Gaps = 48/132 (36%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409
           LL    D +     G TPLH+AA  GH E V +LL   ++V+ R                
Sbjct: 28  LLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSK-------------- 73

Query: 410 LDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGL 469
              +GNT    A  + HH                                +++ L   G 
Sbjct: 74  ---DGNTPEHLAKKNGHH-------------------------------EIVKLLDAKGA 99

Query: 470 NVDSKDRHGRTA 481
           +V+++       
Sbjct: 100 DVNARSWGSSHH 111

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 50.5 bits (122), Expect = 5e-08
 Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 17/69 (24%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409
           LL    D +     G TP H+A   GH E V +L    ++V+ R +              
Sbjct: 61  LLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSW-------------- 106

Query: 410 LDMNGNTAL 418
                +   
Sbjct: 107 ---GSSHHH 112

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 72.9 bits (180), Expect = 2e-15
 Identities = 29/176 (16%), Positives = 55/176 (31%), Gaps = 50/176 (28%)

Query: 335 LLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
           L T A+ G    +  LL+A  +P+  +S GR P+ +    G      +LL H +  +  D
Sbjct: 16  LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCAD 74

Query: 395 YIIFMYNLSYDIIILLDMNGNT-ALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAE 453
                                T  + +A                                
Sbjct: 75  P-----------------ATLTRPVHDAAREGF--------------------------- 90

Query: 454 KRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509
               +  +  L + G  +D +D  GR  +++A    + ++  +L        G+N 
Sbjct: 91  ----LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNH 142

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 75.6 bits (186), Expect = 2e-15
 Identities = 23/171 (13%), Positives = 48/171 (28%), Gaps = 26/171 (15%)

Query: 361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWE 420
             +G+T LHIA  +  +  V +L++  ++VH +    F               G   L  
Sbjct: 90  YYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGG---YFYFGELPLSL 146

Query: 421 AISSKHHSIFRIL---------------YHCTAISDPYTAGDLLCTAEKRNDMSVMEELV 465
           A  +    I   L                  T +       D      K     + + L+
Sbjct: 147 AACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTK-FVTKMYDLLL 205

Query: 466 KYGLNVDSK-------DRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509
                +          +  G + + +A     + +   ++        A+ 
Sbjct: 206 IKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHH 256

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 53.2 bits (128), Expect = 6e-08
 Identities = 33/180 (18%), Positives = 56/180 (31%), Gaps = 47/180 (26%)

Query: 364 GRTPLHIAASKG----HEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALW 419
            R  L    S+G     E  +  LL H   +   ++                  G T L 
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFRE-------------PSTGKTCLP 51

Query: 420 EA---ISSKHHSIFRILYHCTA--------ISDPYTAGDL-----LCTAEKRNDMSVMEE 463
           +A   +S+  +    IL             I+ P+          L  A +R     +E 
Sbjct: 52  KALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVEL 111

Query: 464 LVKYGLNVDSKDR--------------HGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509
           LV+ G +V ++ R               G   + +A   N   +V++L  NG       +
Sbjct: 112 LVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRR 171

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246

 Score = 74.9 bits (184), Expect = 3e-15
 Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 4/137 (2%)

Query: 182 VEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEK 241
           +   +LF  +  +   L++  ++ + +P    +I Q +  D  Y++  G V+        
Sbjct: 9   IRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV----N 64

Query: 242 EIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILK 301
           +  V +   G  FGE+  +   P+  T    +   L  L      + +         +  
Sbjct: 65  DNKVNSSGPGSSFGELALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYD 124

Query: 302 NFLQQHKKLKDLNIGDL 318
           + L+    LK L   D 
Sbjct: 125 DLLKSMPVLKSLTTYDR 141

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246

 Score = 72.9 bits (179), Expect = 1e-14
 Identities = 24/137 (17%), Positives = 55/137 (40%), Gaps = 8/137 (5%)

Query: 172 SICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGE 231
              + ++   ++ + + K ++      L   +  +   P E +I + +  ++ Y+I  G 
Sbjct: 117 FKKRLMYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGA 176

Query: 232 VEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQS 291
           V++     + +  +  L+  D FGEV  L   P+  T      +++  L  S     +  
Sbjct: 177 VDVS---KKGQGVINKLKDHDYFGEVALLNDLPRQATVTATKRTKVATLGKSGFQRLLGP 233

Query: 292 KQEDNVSILK-NFLQQH 307
             +    +LK N   +H
Sbjct: 234 AVD----VLKLNDPTRH 246

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 72.8 bits (180), Expect = 3e-15
 Identities = 37/167 (22%), Positives = 57/167 (34%), Gaps = 49/167 (29%)

Query: 336 LTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDY 395
           L V   GN      LL    +PD+ D  G   +H AA  G  + +  LL+  ++V++ D 
Sbjct: 42  LQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN 101

Query: 396 IIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKR 455
                             GN  L  A    H  +                          
Sbjct: 102 -----------------EGNLPLHLAAKEGHLRV-------------------------- 118

Query: 456 NDMSVMEELVKYG-LNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNG 501
                +E LVK+   NV  ++  G TA ++A      E+V+ +  NG
Sbjct: 119 -----VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 66.6 bits (164), Expect = 4e-13
 Identities = 26/142 (18%), Positives = 43/142 (30%), Gaps = 49/142 (34%)

Query: 363 KGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAI 422
                L  AA++G  E +  LL++  NV+ ++                   G TAL    
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQNG-----------------FGRTAL---- 42

Query: 423 SSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAI 482
                           +                 +  +   L+  G N D KDR G   I
Sbjct: 43  ------------QVMKL----------------GNPEIARRLLLRGANPDLKDRTGFAVI 74

Query: 483 EIAMAENNVEMVNFLVMNGSDV 504
             A     ++ +  L+   +DV
Sbjct: 75  HDAARAGFLDTLQTLLEFQADV 96

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 65.5 bits (161), Expect = 1e-12
 Identities = 26/152 (17%), Positives = 52/152 (34%), Gaps = 49/152 (32%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409
           LL+  ++ +  +  GRT L +    G+ E    LL   +N  L+D               
Sbjct: 24  LLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDR-------------- 68

Query: 410 LDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGL 469
               G   +                H  A               +   +  ++ L+++  
Sbjct: 69  ---TGFAVI----------------HDAA---------------RAGFLDTLQTLLEFQA 94

Query: 470 NVDSKDRHGRTAIEIAMAENNVEMVNFLVMNG 501
           +V+ +D  G   + +A  E ++ +V FLV + 
Sbjct: 95  DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187

 Score = 73.2 bits (180), Expect = 3e-15
 Identities = 30/150 (20%), Positives = 62/150 (41%), Gaps = 9/150 (6%)

Query: 179 LHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVE-MIDY 237
           L  V K+ LF D S E +  L + M+    P    ++ + +  D + +I++GEV  + D 
Sbjct: 38  LEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDI 97

Query: 238 EMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNV 297
             +    +  +  G + GE+  +   P+  +      +    L   AL + + +  +   
Sbjct: 98  PNKGIQTIAKVGAGAIIGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGN 157

Query: 298 SILKNFLQQ--------HKKLKDLNIGDLI 319
            +L   LQ         + ++    +G+LI
Sbjct: 158 KVLIRLLQLLTARFRESYDRILPKTLGELI 187

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381

 Score = 76.7 bits (188), Expect = 3e-15
 Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 7/176 (3%)

Query: 153 AESLNQHQLIEQLPKSICKSICQ-HLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPR 211
           AE   +   +  + K I K           + K  LF  +       +   M        
Sbjct: 102 AEVYTEEDAVSYVRKVIPKDYKTMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAG 161

Query: 212 EDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRT 271
           E VI Q    D+ Y++  GEV++          V  +  G  FGE+  +   P+  T + 
Sbjct: 162 ETVIQQGNEGDNFYVVDQGEVDVYV----NGEWVTNISEGGSFGELALIYGTPRAATVKA 217

Query: 272 KTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDL--IAESGEE 325
           KT  +L  +   +    +         + + FL +   L+ L   +   +A++ E 
Sbjct: 218 KTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILESLEKWERLTVADALEP 273

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381

 Score = 74.4 bits (182), Expect = 2e-14
 Identities = 31/148 (20%), Positives = 60/148 (40%), Gaps = 6/148 (4%)

Query: 170 CKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVS 229
                + ++   + KV + + + K   + +   ++       E +++Q E  DD YII  
Sbjct: 238 STLRKRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITE 297

Query: 230 GEVEMI--DYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIE 287
           G   ++      E+ + VG L   D FGE+  L  RP+  T   +   + ++L       
Sbjct: 298 GTASVLQRRSPNEEYVEVGRLGPSDYFGEIALLLNRPRAATVVARGPLKCVKLDRPRFER 357

Query: 288 AMQSKQEDNVSILKNFLQQHKKLKDLNI 315
            +    E    ILK  +Q++     L +
Sbjct: 358 VLGPCSE----ILKRNIQRYNSFISLTV 381

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 73.3 bits (181), Expect = 4e-15
 Identities = 21/157 (13%), Positives = 49/157 (31%), Gaps = 40/157 (25%)

Query: 359 IGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTAL 418
           +   +    L  A  +  ++   +L      V   D                   GNT L
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDT-----------------EGNTPL 43

Query: 419 WEAISSKHHSIFRIL------------YHCTAISDPYTAGDLLCTAEKRNDMSVMEELVK 466
             A+ +    I + L               +              A  +    ++  ++K
Sbjct: 44  NIAVHNNDIEIAKALIDRGADINLQNSISDSP----------YLYAGAQGRTEILAYMLK 93

Query: 467 YG-LNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGS 502
           +   +++  +R+G  A+  A  + +++ V  L+ +G 
Sbjct: 94  HATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR 130

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 72.5 bits (179), Expect = 7e-15
 Identities = 33/189 (17%), Positives = 70/189 (37%), Gaps = 43/189 (22%)

Query: 334 NLLTVASTGNAAFLDELLKAR-LDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHL 392
            LL  A+  +   + E+L+      D  D++G TPL+IA      E    L+   ++++L
Sbjct: 8   ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL 67

Query: 393 RDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAIS-----------D 441
           ++                    ++    A +     I   +     +             
Sbjct: 68  QNS-----------------ISDSPYLYAGAQGRTEILAYM-----LKHATPDLNKHNRY 105

Query: 442 PYTAGDLLCTAEKRNDMSVMEELVKYGL-NVDSKDRHGRTAIEIAMAENN-----VEMVN 495
              A   L  A ++  +  ++ L++ G  ++D ++  G TA+  A+          ++V 
Sbjct: 106 GGNA---LIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162

Query: 496 FLVMNGSDV 504
            L+ NG+D 
Sbjct: 163 LLMENGADQ 171

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 70.6 bits (174), Expect = 4e-14
 Identities = 29/153 (18%), Positives = 51/153 (33%), Gaps = 46/153 (30%)

Query: 349 ELL--KARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKH-ASNVHLRDYIIFMYNLSYD 405
             +   A  D +  +  G   L  AA KGH + V +LL+    ++  ++           
Sbjct: 89  AYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQND---------- 138

Query: 406 IIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELV 465
                   G TAL EA+                                +    +++ L+
Sbjct: 139 -------FGYTALIEAV--------------------------GLREGNQLYQDIVKLLM 165

Query: 466 KYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLV 498
           + G +   KD  GRTA++ A  +   E+   L 
Sbjct: 166 ENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 47.4 bits (114), Expect = 3e-06
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKH 386
           L++   D  I D+ GRT +  A  KG+ E   +L ++
Sbjct: 164 LMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291

 Score = 75.4 bits (185), Expect = 4e-15
 Identities = 35/176 (19%), Positives = 65/176 (36%), Gaps = 7/176 (3%)

Query: 153 AESLNQHQLIEQLPKSICKSICQHLFLHT-VEKVYLFKDVSKEIIVLLVAKMKAEYIPPR 211
           AE   +      + K I K       L   +EK  LF  +       +   M        
Sbjct: 11  AEVYTEEDAASYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAG 70

Query: 212 EDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRT 271
           E VI Q +  D+ Y+I  GE+++            ++  G  FGE+  +   P+  T + 
Sbjct: 71  ETVIQQGDEGDNFYVIDQGEMDVYVNNEW----ATSVGEGGSFGELALIYGTPRAATVKA 126

Query: 272 KTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDL--IAESGEE 325
           KT  +L  +   +    +         + + FL +   L+ L+  +   +A++ E 
Sbjct: 127 KTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILESLDKWERLTVADALEP 182

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291

 Score = 72.4 bits (177), Expect = 4e-14
 Identities = 30/143 (20%), Positives = 60/143 (41%), Gaps = 9/143 (6%)

Query: 176 HLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMI 235
             FL  V    + + + K   + +   ++       + +++Q E  D+ +II+ G   ++
Sbjct: 156 EEFLSKVS---ILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVL 212

Query: 236 --DYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQ 293
               E E+ + VG L   D FGE+  L  RP+  T   +   + ++L        +    
Sbjct: 213 QRRSENEEFVEVGRLGPSDYFGEIALLMNRPKAATVVARGPLKCVKLDRPRFERVLGPCS 272

Query: 294 EDNVSILKNFLQQHKKLKDLNIG 316
           +    ILK  +QQ+     L++ 
Sbjct: 273 D----ILKRNIQQYNSFVSLSVA 291

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138

 Score = 71.6 bits (176), Expect = 4e-15
 Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 6/127 (4%)

Query: 179 LHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE 238
              V  V LF+ +   ++V +V  ++A  +P    +    E  D ++ +V G V +    
Sbjct: 10  WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN 69

Query: 239 MEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVS 298
                    L  G  FGE+  +   P+  T    T   LL L ++       S  E    
Sbjct: 70  ------PVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEI 123

Query: 299 ILKNFLQ 305
             K  L+
Sbjct: 124 FRKTALE 130

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355

 Score = 75.3 bits (185), Expect = 7e-15
 Identities = 36/231 (15%), Positives = 70/231 (30%), Gaps = 63/231 (27%)

Query: 60  AMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEF 119
           AM+W++ T++T GYGD    +    +     M+  +G+     G +              
Sbjct: 165 AMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGIL-------------- 210

Query: 120 RNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFL 179
                 A+ F                        + + +   +          + Q L  
Sbjct: 211 ------ATGF-----------------------YQEVRRGDFVRNWQLVAAVPLFQKL-- 239

Query: 180 HTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEM 239
                          ++V +V  ++A  +P    +    E  D ++ +V G V +     
Sbjct: 240 ------------GPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSV---AT 284

Query: 240 EKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQ 290
              +    L  G  FGE+  +   P+  T    T   LL L ++       
Sbjct: 285 PNPV---ELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCS 332

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 74.1 bits (183), Expect = 1e-14
 Identities = 30/159 (18%), Positives = 46/159 (28%), Gaps = 41/159 (25%)

Query: 356 DPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGN 415
                +S+G TPL IA  +  EE +   +                            +  
Sbjct: 131 HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV-----------------------DIE 167

Query: 416 TALWEAISSKHHSIFRILYHCTAIS----------DPYTAGDLLCTAEKRNDMSVMEELV 465
            A  E          + L      S             TA   L  A  +    V++ L+
Sbjct: 168 AARKEEERIMLRDARQWL-----NSGHINDVRHAKSGGTA---LHVAAAKGYTEVLKLLI 219

Query: 466 KYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
           +   +V+ KD  G T +  A      E    LV N  D+
Sbjct: 220 QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM 258

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 71.8 bits (177), Expect = 5e-14
 Identities = 35/178 (19%), Positives = 60/178 (33%), Gaps = 49/178 (27%)

Query: 335 LLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
            L   S+G+   +  LL+   D +  +  G T LH A    + + V  L+++ +N++  D
Sbjct: 44  FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103

Query: 395 YIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEK 454
                              G   L                H  A                
Sbjct: 104 N-----------------EGWIPL----------------HAAA---------------S 115

Query: 455 RNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLV-MNGSDVVGANKCE 511
              + + E L+  G +V + +  G T ++IA  E   E++   V   G D+  A K E
Sbjct: 116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEE 173

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 69.5 bits (171), Expect = 4e-13
 Identities = 21/147 (14%), Positives = 44/147 (29%), Gaps = 49/147 (33%)

Query: 358 DIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTA 417
            + D+K +    +    G E  +   +       ++                   +    
Sbjct: 2   KMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKF------------------DDGAV 43

Query: 418 LWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRH 477
                                             A    D   +  L++ G +++  +  
Sbjct: 44  F-------LA------------------------ACSSGDTEEVLRLLERGADINYANVD 72

Query: 478 GRTAIEIAMAENNVEMVNFLVMNGSDV 504
           G TA+  A  ++NV+MV FLV NG+++
Sbjct: 73  GLTALHQACIDDNVDMVKFLVENGANI 99

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 64.4 bits (158), Expect = 2e-11
 Identities = 25/155 (16%), Positives = 51/155 (32%), Gaps = 48/155 (30%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409
           L    ++       G T LH+AA+KG+ E + +L++   +V+++DY              
Sbjct: 185 LNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY-------------- 230

Query: 410 LDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGL 469
              +G T L                H  A                         LV+   
Sbjct: 231 ---DGWTPL----------------HAAA---------------HWGKEEACRILVENLC 256

Query: 470 NVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
           ++++ ++ G+TA ++A  +    +           
Sbjct: 257 DMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLH 291

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82

 Score = 68.1 bits (167), Expect = 1e-14
 Identities = 13/54 (24%), Positives = 26/54 (48%)

Query: 57  YISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVV 110
           +  ++YW+  T+ TVGYGD      + M F    ++  +G  A  +  +   ++
Sbjct: 29  WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFLI 82

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 69.3 bits (171), Expect = 2e-14
 Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 35/144 (24%)

Query: 364 GRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAIS 423
               L  AA  G ++ V +L+ + ++V+ +D                   G T L+ A +
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAKDE-----------------YGLTPLYLATA 56

Query: 424 SKHHSIFRILYHCTAIS----------DPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDS 473
             H  I  +L     +             +T    L  A     + + E L+K+G +V++
Sbjct: 57  HGHLEIVEVL-----LKNGADVNAVDAIGFTP---LHLAAFIGHLEIAEVLLKHGADVNA 108

Query: 474 KDRHGRTAIEIAMAENNVEMVNFL 497
           +D+ G+TA +I++   N ++   L
Sbjct: 109 QDKFGKTAFDISIGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 50.1 bits (121), Expect = 1e-07
 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 17/84 (20%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409
           LLK   D +  D+ G TPLH+AA  GH E   VLLKH ++V+ +                
Sbjct: 66  LLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ---------------- 109

Query: 410 LDMNGNTALWEAISSKHHSIFRIL 433
            D  G TA   +I + +  +  IL
Sbjct: 110 -DKFGKTAFDISIGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 45.1 bits (108), Expect = 6e-06
 Identities = 18/56 (32%), Positives = 32/56 (57%)

Query: 449 LCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
           L  A +      +  L+  G +V++KD +G T + +A A  ++E+V  L+ NG+DV
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV 73

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 43.5 bits (104), Expect = 2e-05
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 356 DPDIGDSKGRTPLHIAASKGHEECVLVLLKH 386
           D +  D  G+T   I+   G+E+   +L K 
Sbjct: 105 DVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154

 Score = 68.9 bits (169), Expect = 5e-14
 Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 5/129 (3%)

Query: 153 AESLNQHQLIEQLPKSICKSICQHLFL-HTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPR 211
           AE   +      + K I K       L   +EK  LF  +       +   M        
Sbjct: 10  AEVYTEEDAASYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAG 69

Query: 212 EDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRT 271
           E VI Q +  D+ Y+I  GE+++            ++  G  FGE+  +   P+  T + 
Sbjct: 70  ETVIQQGDEGDNFYVIDQGEMDVY----VNNEWATSVGEGGSFGELALIYGTPRAATVKA 125

Query: 272 KTLSQLLRL 280
           KT  +L  +
Sbjct: 126 KTNVKLWGI 134

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 38/181 (20%), Positives = 59/181 (32%), Gaps = 25/181 (13%)

Query: 335 LLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
           LL  A TG    + + +K   DP   + +G T LH A    +   V  L+   +NV+  D
Sbjct: 25  LLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPD 84

Query: 395 YIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTA------ISDPYTAGDL 448
                             +G T L  A S     I   L    A      +SD  TA + 
Sbjct: 85  S-----------------HGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFE- 126

Query: 449 LCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGAN 508
            C   +         L     ++   +     A+    AE   E ++F       V+  +
Sbjct: 127 KCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDE-LSFREGESVTVLRRD 185

Query: 509 K 509
            
Sbjct: 186 G 186

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 66.5 bits (163), Expect = 2e-12
 Identities = 29/141 (20%), Positives = 46/141 (32%), Gaps = 48/141 (34%)

Query: 364 GRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAIS 423
               L  AA  G  E V   +K  ++    +                   G TAL  AI 
Sbjct: 21  PLVLLLDAALTGELEVVQQAVKEMNDPSQPNE-----------------EGITALHNAIC 63

Query: 424 SKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIE 483
             ++SI                               ++ L+  G NV+S D HG T + 
Sbjct: 64  GANYSI-------------------------------VDFLITAGANVNSPDSHGWTPLH 92

Query: 484 IAMAENNVEMVNFLVMNGSDV 504
            A + N+  +   LV +G+ +
Sbjct: 93  CAASCNDTVICMALVQHGAAI 113

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 441 DPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMN 500
           +P      L  A    ++ V+++ VK   +    +  G TA+  A+   N  +V+FL+  
Sbjct: 20  NPLVL---LLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITA 76

Query: 501 GSDV 504
           G++V
Sbjct: 77  GANV 80

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 16/136 (11%), Positives = 27/136 (19%), Gaps = 51/136 (37%)

Query: 361 DSKGRTPLHIAAS--KGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTAL 418
            S G T         +G+ +C   L     ++ L +                      AL
Sbjct: 118 LSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNS-----------------GAVYAL 160

Query: 419 WEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHG 478
           W+  S++                                           + V  +D   
Sbjct: 161 WDY-SAEFGDELSFR-------------------------------EGESVTVLRRDGPE 188

Query: 479 RTAIEIAMAENNVEMV 494
            T    A        V
Sbjct: 189 ETDWWWAALHGQEGYV 204

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 10/45 (22%), Positives = 11/45 (24%)

Query: 336 LTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECV 380
           L   S      L       +     D    T    AA  G E  V
Sbjct: 160 LWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142

 Score = 67.3 bits (165), Expect = 1e-13
 Identities = 17/131 (12%), Positives = 46/131 (35%), Gaps = 4/131 (3%)

Query: 179 LHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMI--- 235
              +     F  ++ E +  +    + +  P    +  +N   D++ +++ G VE+    
Sbjct: 5   PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSN 64

Query: 236 -DYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQE 294
                     V ++  G +FG    +       + R     +++ +  + L E  ++ Q 
Sbjct: 65  GGAGSAANSTVCSVVPGAIFGVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQA 124

Query: 295 DNVSILKNFLQ 305
               ++ N   
Sbjct: 125 LGQVLMNNVAA 135

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 66.7 bits (164), Expect = 1e-13
 Identities = 21/149 (14%), Positives = 38/149 (25%), Gaps = 48/149 (32%)

Query: 361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWE 420
            S        A   G  + V   +    +V+                      G   L  
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLE-----------------GGRKPLHY 46

Query: 421 AISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRT 480
           A                                      ++E L+  G ++++ D+H  T
Sbjct: 47  AADCGQL-------------------------------EILEFLLLKGADINAPDKHHIT 75

Query: 481 AIEIAMAENNVEMVNFLVMNGSDVVGANK 509
            +  A+ E +V  V  L+  G+D      
Sbjct: 76  PLLSAVYEGHVSCVKLLLSKGADKTVKGP 104

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 64.7 bits (159), Expect = 7e-13
 Identities = 25/145 (17%), Positives = 41/145 (28%), Gaps = 48/145 (33%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409
            +    D +     GR PLH AA  G  E +  LL   ++++  D               
Sbjct: 26  YVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDK-------------- 71

Query: 410 LDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGL 469
              +  T L  A+   H S  ++                               L+  G 
Sbjct: 72  ---HHITPLLSAVYEGHVSCVKL-------------------------------LLSKGA 97

Query: 470 NVDSKDRHGRTAIEIAMAENNVEMV 494
           +   K   G TA E    +    ++
Sbjct: 98  DKTVKGPDGLTAFEATDNQAIKALL 122

>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137

 Score = 67.1 bits (164), Expect = 2e-13
 Identities = 17/121 (14%), Positives = 42/121 (34%), Gaps = 11/121 (9%)

Query: 181 TVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMI--DYE 238
            V +V LF+++ + ++  +  ++K      +  ++ + +  +++  I+ G +E +  D  
Sbjct: 7   GVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGG 66

Query: 239 MEKEIAVGTLQTGDMFGEVGALCCRPQI---------YTYRTKTLSQLLRLKTSALIEAM 289
                    L+ GD  G+                    T +  T  +   L    L    
Sbjct: 67  RSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVA 126

Query: 290 Q 290
            
Sbjct: 127 S 127

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 63.9 bits (157), Expect = 5e-13
 Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 48/138 (34%)

Query: 364 GRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAIS 423
           GRTPLH+AA  GH E V +LL+  ++V+ +D                  NG T L  A +
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-----------------NGRTPLHLA-A 43

Query: 424 SKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIE 483
              H                              + V++ L++ G +V++KD++GRT + 
Sbjct: 44  RNGH------------------------------LEVVKLLLEAGADVNAKDKNGRTPLH 73

Query: 484 IAMAENNVEMVNFLVMNG 501
           +A    ++E+V  L+  G
Sbjct: 74  LAARNGHLEVVKLLLEAG 91

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 56.6 bits (138), Expect = 2e-10
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 17/84 (20%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409
           LL+A  D +  D  GRTPLH+AA  GH E V +LL+  ++V+ +D               
Sbjct: 21  LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-------------- 66

Query: 410 LDMNGNTALWEAISSKHHSIFRIL 433
              NG T L  A  + H  + ++L
Sbjct: 67  ---NGRTPLHLAARNGHLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 48.1 bits (116), Expect = 2e-07
 Identities = 19/37 (51%), Positives = 24/37 (64%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKH 386
           LL+A  D +  D  GRTPLH+AA  GH E V +LL+ 
Sbjct: 54  LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 44.7 bits (107), Expect = 4e-06
 Identities = 18/56 (32%), Positives = 36/56 (64%)

Query: 449 LCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
           L  A +   + V++ L++ G +V++KD++GRT + +A    ++E+V  L+  G+DV
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149

 Score = 65.8 bits (161), Expect = 6e-13
 Identities = 20/111 (18%), Positives = 44/111 (39%), Gaps = 1/111 (0%)

Query: 182 VEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEME- 240
           + +  LF  +  E    L A M    +   + +  + +  D +Y++  G+V++     + 
Sbjct: 7   LRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDG 66

Query: 241 KEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQS 291
           +E  +  +   ++ GE+      P+  T    T  +LL L    L   +  
Sbjct: 67  RENMLAVVGPSELIGELSLFDPGPRTATGTALTEVKLLALGHGDLQPWLNV 117

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154

 Score = 64.3 bits (157), Expect = 2e-12
 Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 4/120 (3%)

Query: 175 QHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEM 234
           Q +    ++  +LF+ +S   +  L+A      +     V  Q E     Y ++SG V++
Sbjct: 7   QRVHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKI 66

Query: 235 IDYEME-KEIAVGTLQTGDMFGEVGALCCRPQIYTY--RTKTLSQLLRLKTSALIEAMQS 291
                E +E  +      + F E       P  Y    +    SQL R    A +  +Q 
Sbjct: 67  YRLTPEGQEKILEVTNERNTFAEAMMFMDTPN-YVATAQAVVPSQLFRFSNKAYLRQLQD 125

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97

 Score = 61.4 bits (149), Expect = 5e-12
 Identities = 21/58 (36%), Positives = 29/58 (50%)

Query: 56  RYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGT 113
           R I A+Y+S+ T+TTVGYGD         IF I Y+   +GL    I  +   V   +
Sbjct: 32  RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPS 89

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114

 Score = 61.8 bits (150), Expect = 6e-12
 Identities = 19/58 (32%), Positives = 28/58 (48%)

Query: 56  RYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGT 113
           R I A+Y+S+ T+TTVG G+         IF I Y+   +GL    I  +   V   +
Sbjct: 49  RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPS 106

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336

 Score = 66.3 bits (162), Expect = 6e-12
 Identities = 13/64 (20%), Positives = 29/64 (45%)

Query: 57  YISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRT 116
           +  ++YW+  T+ TVGYGD      + M F +  ++  +G  A  +  +   ++   +  
Sbjct: 46  WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMK 105

Query: 117 MEFR 120
           +   
Sbjct: 106 LMGL 109

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134

 Score = 62.0 bits (151), Expect = 8e-12
 Identities = 22/119 (18%), Positives = 47/119 (39%), Gaps = 6/119 (5%)

Query: 182 VEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIM-QNEAPDDVYIIVSGEVEMIDYEME 240
           + ++  F +++  +   L + M  E +     +I+   +  D  Y+I++G VE+   + +
Sbjct: 18  MHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPDGK 77

Query: 241 KEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKT-LSQLLRLKTSALIEAMQSKQEDNVS 298
               V  L  G+ FG    L  +      RTK    Q + +        +   ++   S
Sbjct: 78  ----VENLFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVEKSGPS 132

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 61.1 bits (149), Expect = 9e-12
 Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 48/137 (35%)

Query: 361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWE 420
            S     L  AA  G ++ V +L+ + ++V  +D                  NG+T L  
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDK-----------------NGSTPLHL 63

Query: 421 AISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRT 480
           A  + H                                 V++ L++ G +V ++D+ G+T
Sbjct: 64  AARNGHLE-------------------------------VVKLLLEAGADVXAQDKFGKT 92

Query: 481 AIEIAMAENNVEMVNFL 497
           A +I++   N ++   L
Sbjct: 93  AFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 17/84 (20%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409
           L+    D    D  G TPLH+AA  GH E V +LL+  ++V  +D               
Sbjct: 43  LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK-------------- 88

Query: 410 LDMNGNTALWEAISSKHHSIFRIL 433
               G TA   +I + +  +  IL
Sbjct: 89  ---FGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 51/139 (36%)

Query: 371 AASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIF 430
            +S  H      L+   S++                      +    L EA  +      
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM--------------------GSDLGKKLLEAARAGQDD-- 38

Query: 431 RILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENN 490
                                         +  L+  G +V +KD++G T + +A    +
Sbjct: 39  -----------------------------EVRILMANGADVAAKDKNGSTPLHLAARNGH 69

Query: 491 VEMVNFLVMNGSDVVGANK 509
           +E+V  L+  G+DV   +K
Sbjct: 70  LEVVKLLLEAGADVXAQDK 88

>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Length = 343

 Score = 64.8 bits (157), Expect = 2e-11
 Identities = 26/148 (17%), Positives = 56/148 (37%), Gaps = 13/148 (8%)

Query: 16  IILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGD 75
           ++     G +++L+A    H      G  +           +++A  +SI T TT+GYG 
Sbjct: 56  LVSWLLFGLIFWLIA--LIHGDLENPGGDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGF 113

Query: 76  LHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRL 135
                T E    +F ++    +   +   M   ++    R  +   ++  + N V   R 
Sbjct: 114 RCV--TEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKRAQTLLFSHNAVVAMRD 171

Query: 136 PPRLKKQILAYMCLRFKAESLNQHQLIE 163
                      +CL ++  +L +  ++E
Sbjct: 172 G---------KLCLMWRVGNLRKSHIVE 190

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 5/116 (4%)

Query: 166 PKSICKSICQHLFL-HTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDV 224
                KS      +   +      K++    I  +V  M          +I + +    V
Sbjct: 8   LPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLV 67

Query: 225 YIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRL 280
           Y++  G+VE+     ++ + + T+  G +FGE+  L    +  T +T    +L  +
Sbjct: 68  YVMEDGKVEVT----KEGVKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAI 119

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 64.2 bits (156), Expect = 4e-11
 Identities = 21/174 (12%), Positives = 49/174 (28%), Gaps = 17/174 (9%)

Query: 349 ELLKARLDPDIGD--SKGRTPLHIAAS-KGHEECVLVLLKHASNVHLRDYIIFMYNLSYD 405
            L +           ++       AA  +GH   +  LL     +   +   F Y     
Sbjct: 181 RLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEK-Y 239

Query: 406 IIILLDMNGN--TALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEE 463
           +   +  + N    + +A    +      L   +     +     L    +RND  ++++
Sbjct: 240 VNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYM---LRNLIRRNDEVLLDD 296

Query: 464 L--------VKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509
           +        +K      +        + +A+   N      L+   S +     
Sbjct: 297 IRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKA 350

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 61.1 bits (148), Expect = 3e-10
 Identities = 38/279 (13%), Positives = 83/279 (29%), Gaps = 36/279 (12%)

Query: 292 KQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLD--- 348
               N+  ++  L  +    + N   L +++ ++       V     A TG ++ LD   
Sbjct: 55  PGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSE--VICFVAAITGCSSALDTLC 112

Query: 349 ELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIII 408
            LL +     +  ++      +AA  GH   +  L + A    +                
Sbjct: 113 LLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM-------------- 158

Query: 409 LLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGD-----LLCTAEKRNDMSVMEE 463
            +      A   A  + H  +   L                       A  R   +V+  
Sbjct: 159 -IQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINF 217

Query: 464 LVKYGLNVDSKDRH----GRTAIE--IAMAENNVEMVNFLVMNGS-----DVVGANKCEF 512
           L+   + +   + H    G   +   IA   N ++ ++      +     D+V  ++C  
Sbjct: 218 LLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQ 277

Query: 513 SSTNLNDMLQKREIGHRITVHDDNSTQNEVLLKKLEIID 551
               L +++++ +      +    S      L     I 
Sbjct: 278 GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIP 316

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 16/104 (15%), Positives = 27/104 (25%), Gaps = 18/104 (17%)

Query: 335 LLTVASTGNAAFLDELLKARL---------DPDIGDSKGRTPLHIAASKGHEECVLVLLK 385
           +L      N   L + ++  L                     L +A   G++    +LL 
Sbjct: 281 MLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 340

Query: 386 HASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSI 429
             S + L     +  N         +  G   L       HH  
Sbjct: 341 IPSVLALTKANNYYIN---------ETGGRLDLRAVALEHHHHH 375

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148

 Score = 60.0 bits (145), Expect = 6e-11
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 1/87 (1%)

Query: 57  YISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNM-TNLVVEGTRR 115
            + A+Y+S+ T+TTVG G+         +F I Y+   +GL    I  +  N+ +     
Sbjct: 53  PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILS 112

Query: 116 TMEFRNSIEAASNFVGRNRLPPRLKKQ 142
             +                +  +L + 
Sbjct: 113 NRKKETDAYRLEVMEKLEAIEKKLAEH 139

>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333

 Score = 62.0 bits (150), Expect = 1e-10
 Identities = 18/99 (18%), Positives = 35/99 (35%)

Query: 182 VEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEK 241
           +  + +F+    E +V L A ++       + ++ Q E      +I SG  E+     + 
Sbjct: 15  LAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDG 74

Query: 242 EIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRL 280
              +     G + GE+  L   P+  T  T         
Sbjct: 75  VAIIARALPGMIVGEIALLRDSPRSATVTTIEPLTGWTG 113

>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260

 Score = 60.5 bits (147), Expect = 2e-10
 Identities = 30/149 (20%), Positives = 61/149 (40%), Gaps = 9/149 (6%)

Query: 179 LHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE 238
           +  +  + L K  +   +   ++       P +  +I Q E  + +Y IV G V ++  +
Sbjct: 45  MADIGSMVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKD 104

Query: 239 ME-KEIAVGTLQTGDMFGEVGALC-CRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDN 296
            E KE+ +  L  GD  GE+G     + +    R KT  ++  +      + +    + N
Sbjct: 105 EEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLI----QVN 160

Query: 297 VSILKNFLQQH-KKLKDLN--IGDLIAES 322
             IL     Q  ++L+  +  +G+L    
Sbjct: 161 PDILMRLSAQMARRLQVTSEKVGNLAFLL 189

>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Length = 340

 Score = 61.3 bits (148), Expect = 2e-10
 Identities = 26/148 (17%), Positives = 54/148 (36%), Gaps = 14/148 (9%)

Query: 16  IILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGD 75
            +     G +++L+A  Y   G+             +    ++SA  +SI T TT+GYG 
Sbjct: 54  TVTWLFFGMIWWLIA--YIR-GDMDHIEDPSWTPCVTNLNGFVSAFLFSIETETTIGYGY 110

Query: 76  LHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRL 135
               +  +    I  +L    L + +   M   +     +  +   ++  +++ V   R 
Sbjct: 111 RVITD--KCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKRAETLVFSTHAVISMRD 168

Query: 136 PPRLKKQILAYMCLRFKAESLNQHQLIE 163
                      +CL F+   L    ++E
Sbjct: 169 G---------KLCLMFRVGDLRNSHIVE 187

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 61.3 bits (148), Expect = 3e-10
 Identities = 35/161 (21%), Positives = 58/161 (36%), Gaps = 21/161 (13%)

Query: 320 AESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEEC 379
           A+    +G  + +  L+   +  +    + LL+   + +  DS GR PLH A   GH   
Sbjct: 224 ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGL 283

Query: 380 VLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHC--- 436
             + LK  +++  RD                   G   L  A+ + +  I  +L      
Sbjct: 284 ACLFLKRGADLGARDS-----------------EGRDPLTIAMETANADIVTLLRLAKMR 326

Query: 437 TAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRH 477
            A +    AGD     +   D S+M       L+  S D H
Sbjct: 327 EAEAAQGQAGDET-YLDIFRDFSLMASDDPEKLSRRSHDLH 366

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 47.1 bits (111), Expect = 9e-06
 Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 48/150 (32%)

Query: 353 ARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDM 412
           A ++   G     TPL  A +         LL++ +NV+  D                  
Sbjct: 224 ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQAD-----------------S 266

Query: 413 NGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVD 472
            G   L  A    H  +  +                                +K G ++ 
Sbjct: 267 AGRGPLHHATILGHTGLACLF-------------------------------LKRGADLG 295

Query: 473 SKDRHGRTAIEIAMAENNVEMVNFLVMNGS 502
           ++D  GR  + IAM   N ++V  L +   
Sbjct: 296 ARDSEGRDPLTIAMETANADIVTLLRLAKM 325

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 24/146 (16%), Positives = 57/146 (39%), Gaps = 8/146 (5%)

Query: 184 KVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEME-KE 242
              LF  ++ E + L ++  +    P  + +  Q +    +Y++ SG+V +    +  +E
Sbjct: 3   GSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQE 62

Query: 243 IAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKN 302
             +  L  G++FGE+  L    +  +      ++LL L     +  +         +  N
Sbjct: 63  RTLALLGPGELFGEMSLLDEGERSASAVAVEDTELLALFREDYLALI----RRLPLVAHN 118

Query: 303 FLQQH-KKLKDLN--IGDLIAESGEE 325
                 ++L++ +  +  L  E    
Sbjct: 119 LAALLARRLREADLELDLLSFEEARN 144

>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213

 Score = 58.8 bits (143), Expect = 4e-10
 Identities = 18/149 (12%), Positives = 51/149 (34%), Gaps = 13/149 (8%)

Query: 184 KVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEV--EMIDYEMEK 241
              +        +  L+   K       E V  Q++  +DV I++ G +  E +     K
Sbjct: 3   SDKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSEN-GK 61

Query: 242 EIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTL--SQLLRLKTSALIEAMQSKQEDNVSI 299
            + +  ++   +      +      +         S++L +     ++ +      +  +
Sbjct: 62  TLEIDEIKPVQIIASG-FIFSSEPRFPVNVVAGENSKILSIPKEVFLDLLMK----DREL 116

Query: 300 LKNFLQQ-HKKLKDLN--IGDLIAESGEE 325
           L  FL+   +  + ++  +  L  ++  E
Sbjct: 117 LLFFLKDVSEHFRVVSEKLFFLTTKTLRE 145

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469

 Score = 61.5 bits (148), Expect = 4e-10
 Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 4/129 (3%)

Query: 182 VEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEK 241
           ++ V  F+     ++  +      E +     +  Q +   + Y +++G +++   E   
Sbjct: 44  LKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSS 103

Query: 242 E---IAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVS 298
               + + TL  G  FGE   L   P+  T  T+  S+LLR++        +  ++    
Sbjct: 104 HQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAG 162

Query: 299 ILKNFLQQH 307
           +L       
Sbjct: 163 LLAPPYGVM 171

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469

 Score = 58.0 bits (139), Expect = 4e-09
 Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 5/108 (4%)

Query: 175 QHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIM-QNEAPDDVYIIVSGEVE 233
             +    +  +     +S  +   L   +  E       V+  Q E     YII+ G V 
Sbjct: 332 LEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVN 391

Query: 234 MIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLS-QLLRL 280
           ++      +  V TL  GD FG++  +   P+  +   +  +   LR+
Sbjct: 392 VVI---YGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRV 436

>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227

 Score = 58.8 bits (143), Expect = 5e-10
 Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 11/158 (6%)

Query: 174 CQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVE 233
            Q +    ++  +LF+ +S   +  L+A      +     V  Q E     Y ++SG V+
Sbjct: 3   FQRVHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVK 62

Query: 234 MIDYEME-KEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTL--SQLLRLKTSALIEAMQ 290
           +     E +E  +      + F E       P  Y    + +  SQL R    A +  + 
Sbjct: 63  IYRLTPEGQEKILEVTNERNTFAEAMMFMDTPN-YVATAQAVVPSQLFRFSNKAYLRQL- 120

Query: 291 SKQEDNVSILKNFLQQH-KKLKDLN--IGDLIAESGEE 325
              +DN  +    L +   +L      I  L  ++   
Sbjct: 121 ---QDNTPLALALLAKLSTRLHQRIDEIETLSLKNATH 155

>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210

 Score = 58.4 bits (142), Expect = 5e-10
 Identities = 30/141 (21%), Positives = 58/141 (41%), Gaps = 9/141 (6%)

Query: 187 LFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEME-KEIAV 245
           L K  +   +   ++       P +  +I Q E  + +Y IV G V ++  + E KE+ +
Sbjct: 3   LGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMIL 62

Query: 246 GTLQTGDMFGEVGALC-CRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFL 304
             L  GD  GE+G     + +    R KT  ++  +      + +    + N  IL    
Sbjct: 63  SYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLI----QVNPDILMRLS 118

Query: 305 QQH-KKLKDLN--IGDLIAES 322
            Q  ++L+  +  +G+L    
Sbjct: 119 AQMARRLQVTSEKVGNLAFLD 139

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227

 Score = 58.8 bits (143), Expect = 6e-10
 Identities = 33/148 (22%), Positives = 63/148 (42%), Gaps = 8/148 (5%)

Query: 182 VEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEME- 240
           + +  +F+ V    I  L  +++    P    V  + E  D +YII+SG+V++     + 
Sbjct: 8   LARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDG 67

Query: 241 KEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSIL 300
           +E  +  +   DMFGE+      P+  +  T T  + + +   AL   +     D   I 
Sbjct: 68  RENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWI----ADRPEIS 123

Query: 301 KNFLQQ-HKKLKDLN--IGDLIAESGEE 325
           +  L+   ++L+  N  + DLI      
Sbjct: 124 EQLLRVLARRLRRTNNNLADLIFTDVPG 151

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237

 Score = 58.4 bits (142), Expect = 8e-10
 Identities = 26/162 (16%), Positives = 58/162 (35%), Gaps = 11/162 (6%)

Query: 168 SICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYII 227
           +      Q           L + + ++ +  L+++         E + +Q E    ++++
Sbjct: 2   NAMAHEAQKAIAR---NSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVV 58

Query: 228 VSGEVEMIDYEME-KEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALI 286
           + G V++        E  V     G+ FGE  AL   P   +    T  +++ + +   +
Sbjct: 59  IDGWVKLFRMTPTGSEAVVSVFTRGESFGEAVALRNTPYPVSAEAVTPCEVMHIPSPVFV 118

Query: 287 EAMQSKQEDNVSILKNFLQQ-HKKLKDLN--IGDLIAESGEE 325
             M      +  I  + L      L  L   +  L A++G +
Sbjct: 119 SLM----RRDPEICISILATTFGHLHSLVAQLEQLKAQTGAQ 156

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 19/114 (16%), Positives = 49/114 (42%), Gaps = 1/114 (0%)

Query: 179 LHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE 238
           L  +++  LF++V ++ +   +  +      P E V+ Q+   + ++++ +G V +    
Sbjct: 5   LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVS 64

Query: 239 ME-KEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQS 291
           +  +E  +G +    + GE   L  + +  + R  T  + L L        ++ 
Sbjct: 65  LGGRERVLGDIYAPGVVGETAVLAHQERSASVRALTPVRTLMLHREHFELILRR 118

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 58.8 bits (142), Expect = 1e-09
 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 17/96 (17%)

Query: 338 VASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYII 397
           VA+  +   +D +++     D   + G T LH AA     +C+ +LLK  + V   +   
Sbjct: 200 VANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNE-- 257

Query: 398 FMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRIL 433
                           G TAL  A    H     +L
Sbjct: 258 ---------------AGETALDIARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 53.8 bits (129), Expect = 5e-08
 Identities = 12/70 (17%), Positives = 30/70 (42%)

Query: 440 SDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVM 499
           +       L      +  + +++ +++ G ++D+K   G TA+  A   N  + +  L+ 
Sbjct: 188 APEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK 247

Query: 500 NGSDVVGANK 509
             + V   N+
Sbjct: 248 GRALVGTVNE 257

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 51.5 bits (123), Expect = 3e-07
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 339 ASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN-VHLRDYII 397
           A       L  LLK R      +  G T L IA  K H+EC  +L +  +       ++ 
Sbjct: 234 ALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHVD 293

Query: 398 FMYNLSYD 405
           + + +S +
Sbjct: 294 YSWVISTE 301

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 48.1 bits (114), Expect = 4e-06
 Identities = 19/143 (13%), Positives = 43/143 (30%), Gaps = 51/143 (35%)

Query: 360 GDSKGRTPLHIAASKGHEECVLV---LLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNT 416
             +     LH+A    ++  + +   ++++  ++  +                   +GNT
Sbjct: 186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA-----------------ADGNT 228

Query: 417 ALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDR 476
           AL  A                                       ++ L+K    V + + 
Sbjct: 229 ALHYAALYNQPDC-------------------------------LKLLLKGRALVGTVNE 257

Query: 477 HGRTAIEIAMAENNVEMVNFLVM 499
            G TA++IA  +++ E    L  
Sbjct: 258 AGETALDIARKKHHKECEELLEQ 280

>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 20/151 (13%), Positives = 50/151 (33%), Gaps = 18/151 (11%)

Query: 181 TVEKVYLFKDVSKEII--VLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE 238
           T+ ++ LF+ +  E    +L   K+        E +I        +  ++ GE+ ++   
Sbjct: 19  TLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNA 78

Query: 239 ME-KEIAVGTLQTGDMFGEVGALCCRPQIY--TYRTKTLSQLLRLKTSALIEAMQSKQED 295
            E     +  ++   +     +L      Y  +Y   T    + +  + ++  +      
Sbjct: 79  KENIYTVIEQIEAPYLIEPQ-SLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFR---- 133

Query: 296 NVSILKNFLQQ--------HKKLKDLNIGDL 318
                 N++          + +L D    DL
Sbjct: 134 YDIFRLNYMNIVSNRAQNLYSRLWDEPTLDL 164

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 2e-09
 Identities = 92/599 (15%), Positives = 170/599 (28%), Gaps = 163/599 (27%)

Query: 46  PNFTETSLWIRYISAMYWSITTMTTVGYGD--LHAVNTVEMIFIIFYMLFNLGLTAY--- 100
             F + +   + +  M  SI +   +   D  + + + V     +F+ L +         
Sbjct: 27  DAFVD-NFDCKDVQDMPKSILSKEEI---DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82

Query: 101 ----LIGN----MTNLVVEGTRRTMEFRNSIEAASNFVGRNRL---PPRLKKQILAYMCL 149
               L  N    M+ +  E  + +M  R  IE       R+RL        K        
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ------RDRLYNDNQVFAKY------- 129

Query: 150 RFKAESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLF--KDVSKEIIVLLVAKMKAEY 207
                ++++ Q   +L +++ +       L   + V +       K  + L V       
Sbjct: 130 -----NVSRLQPYLKLRQALLE-------LRPAKNVLIDGVLGSGKTWVALDVCL----- 172

Query: 208 IPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQT--GDMFGEVGALCCRPQ 265
                   +Q +    ++ +        +  +E       LQ     +     +      
Sbjct: 173 -----SYKVQCKMDFKIFWLNLKNCNSPETVLEM------LQKLLYQIDPNWTSRSDHSS 221

Query: 266 IYTYRTKTLSQLLRLKTSALIEAMQSKQE----DNV---SILKNFLQQHKKL---KDLNI 315
               R  ++   LR     L+++   +       NV        F    K L   +   +
Sbjct: 222 NIKLRIHSIQAELRR----LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277

Query: 316 GDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGD----SKGRTPLH-- 369
            D ++ +       +     LT            LL   LD    D         P    
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEV------KSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 370 -IAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHS 428
            IA S           KH +   L   I      S ++   L+      +++ +S     
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTII----ESSLNV---LEPAEYRKMFDRLS----- 379

Query: 429 IFR----ILYHCTAISDPYTAGDLLCT----AEKRNDMSVMEELVKYGL-NVDSKDR--- 476
           +F     I         P     LL        K + M V+ +L KY L     K+    
Sbjct: 380 VFPPSAHI---------PT---ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427

Query: 477 -HGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKRE-------IGH 528
                       EN   +   +V    D     K   S    +D++           IGH
Sbjct: 428 IPSIYLELKVKLENEYALHRSIV----DHYNIPKTFDS----DDLIPPYLDQYFYSHIGH 479

Query: 529 RITVHDDNSTQNE--VLLKKLEIIDF---EAK---EGKSKGGNC------QRVSIYRGH 573
               H  N    E   L + +  +DF   E K   +  +   +       Q++  Y+ +
Sbjct: 480 ----HLKNIEHPERMTLFRMV-FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 1e-06
 Identities = 72/489 (14%), Positives = 146/489 (29%), Gaps = 154/489 (31%)

Query: 175 QHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYI-------- 226
            H+   T E  Y +KD+        V     + +      I+  E  D + +        
Sbjct: 5   HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 227 -------------IVS---GEVEMIDYE--MEKEIAVGTLQTG---DMFGE-VGALCCRP 264
                        +V     EV  I+Y+  M   I     Q      M+ E    L    
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP-IKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 265 QIYT----YRTKTLSQLLRLKTSALIEAMQSKQEDNV----------SILKNFLQQHKKL 310
           Q++      R +   +L      AL+E    +   NV          + +   +    K+
Sbjct: 124 QVFAKYNVSRLQPYLKL----RQALLEL---RPAKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 311 KD--------LNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDS 362
           +         LN+          +    M   LL        +  D     +L      +
Sbjct: 177 QCKMDFKIFWLNLK----NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 363 KGRTPLHIAASKGHEECVLVLLKHASNVHLRD-YIIFMYNLSYDIIILLDMNGNTALWEA 421
           + R    +  SK +E C+LVL     NV  ++      +NLS  I++         + + 
Sbjct: 233 ELR---RLLKSKPYENCLLVL----LNV--QNAKAWNAFNLSCKILLT---TRFKQVTDF 280

Query: 422 ISSKHHSIFRILYHCTAISDPYT-----------AGDL-------------LCTAEKRND 457
           +S+   +   + +H   ++                 DL             +     R+ 
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 458 MSV-----------MEELVKYGLNV----DSKDRHGRTAI------------EI---AMA 487
           ++            +  +++  LNV    + +    R ++             +    + 
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400

Query: 488 ENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD---DNSTQ--NEV 542
           +++V +V             NK    S     +++K+     I++     +   +  NE 
Sbjct: 401 KSDVMVV------------VNKLHKYS-----LVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 543 LLKKLEIID 551
            L +  I+D
Sbjct: 444 ALHR-SIVD 451

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Length = 103

 Score = 53.2 bits (128), Expect = 4e-09
 Identities = 15/56 (26%), Positives = 23/56 (41%)

Query: 60  AMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRR 115
           A++WS+ T TTVGYGD + V           M   + + A +   +    V     
Sbjct: 44  AIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREEE 99

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Length = 155

 Score = 53.7 bits (129), Expect = 9e-09
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 60  AMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNM-TNLVVEGTRRTME 118
           A++WS+ T TTVGYGDL+ V        +  M+  +     +   + T  V     R   
Sbjct: 88  ALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRGH 147

Query: 119 FRNSIEAA 126
           F    E A
Sbjct: 148 FVRHSEKA 155

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139

 Score = 53.4 bits (128), Expect = 1e-08
 Identities = 18/87 (20%), Positives = 32/87 (36%)

Query: 57  YISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRT 116
           Y  A++WS+ T TTVGYGDL+ V     +  +  M+  +     +   +    V   +  
Sbjct: 41  YPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQER 100

Query: 117 MEFRNSIEAASNFVGRNRLPPRLKKQI 143
                     +      R    L ++ 
Sbjct: 101 RGHFVRHSEKAAEEAYTRTTRALHERF 127

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 26/158 (16%), Positives = 52/158 (32%), Gaps = 27/158 (17%)

Query: 289 MQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVN------LLTVAS-- 340
            + K  D  + L +  +  K      +    A+  +      ++         L +A   
Sbjct: 120 ARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRS 179

Query: 341 --TGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIF 398
               +   +D L++   + D    KG T LH      + EC+ +LL+  +++ + +    
Sbjct: 180 VDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANE--- 236

Query: 399 MYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHC 436
                         +G T L  A   KH     +L   
Sbjct: 237 --------------SGETPLDIAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 51.5 bits (123), Expect = 3e-07
 Identities = 16/70 (22%), Positives = 31/70 (44%)

Query: 440 SDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVM 499
               TA  L   +  R  + +++ LV+   N+D +   G TA+      +N E +  L+ 
Sbjct: 167 EPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR 226

Query: 500 NGSDVVGANK 509
             + +  AN+
Sbjct: 227 GKASIEIANE 236

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 50.0 bits (119), Expect = 8e-07
 Identities = 18/51 (35%), Positives = 24/51 (47%)

Query: 339 ASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
             T NA  L  LL+ +   +I +  G TPL IA    HE C  +L +  S 
Sbjct: 213 CLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 263

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 17/143 (11%), Positives = 40/143 (27%), Gaps = 51/143 (35%)

Query: 360 GDSKGRTPLHIAASKGHEECVLV---LLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNT 416
           G     T LH+A        + +   L++++ N+  +                    G+T
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQT-----------------GKGST 207

Query: 417 ALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDR 476
           AL                                     ++   ++ L++   +++  + 
Sbjct: 208 ALHYCC-------------------------------LTDNAECLKLLLRGKASIEIANE 236

Query: 477 HGRTAIEIAMAENNVEMVNFLVM 499
            G T ++IA    +      L  
Sbjct: 237 SGETPLDIAKRLKHEHCEELLTQ 259

>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Length = 230

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 33/152 (21%), Positives = 55/152 (36%), Gaps = 8/152 (5%)

Query: 181 TVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEME 240
           TV        +    I   +A       P R DV    +    +Y ++SG V +I  E +
Sbjct: 12  TVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDD 71

Query: 241 -KEIAVGTLQTGDMFGEVGALCCRPQIYTY--RTKTLSQLLRLKTSALIEAMQSKQEDNV 297
            +E+ +G   +G+  GE+  L           RT+T  +L  +    L +  Q+    + 
Sbjct: 72  DRELVLGYFGSGEFVGEM-GLFIESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDA 130

Query: 298 -SILKNFLQQ-HKKLKDLN--IGDLIAESGEE 325
             IL     Q  K+L D       L      +
Sbjct: 131 PRILYAIGVQLSKRLLDTTRKASRLAFLDVTD 162

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Length = 122

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 13/56 (23%), Positives = 24/56 (42%)

Query: 60  AMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRR 115
           A++W+  T TTV YGDL+ V     +  +  M+  +     +   +    V   + 
Sbjct: 65  ALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQE 120

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166

 Score = 53.0 bits (127), Expect = 2e-08
 Identities = 17/85 (20%), Positives = 33/85 (38%)

Query: 59  SAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTME 118
            A++WS+ T TTVGYGDL+ V     +  +  M+  +     +   +    V   ++  +
Sbjct: 70  RALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQ 129

Query: 119 FRNSIEAASNFVGRNRLPPRLKKQI 143
                   +      R    L ++ 
Sbjct: 130 QFVRHSEKAAEEAYTRTTRALHERF 154

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Length = 333

 Score = 53.3 bits (127), Expect = 1e-07
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 16/107 (14%)

Query: 57  YISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRT 116
           ++ A ++S+ T+ TVGYGD+H             +   +   A   G +         + 
Sbjct: 97  FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRAKI 156

Query: 117 MEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIE 163
           M  R++I    N                  M L  +A +  Q+ + E
Sbjct: 157 MFARHAIVRPFN----------------GRMTLMVRAANARQNVIAE 187

>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Length = 207

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 12/142 (8%)

Query: 192 SKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEME-KEIAVGTLQT 250
             + +  L+A         +  +I   +  + ++ I+ G V ++  + + +E+ +G L +
Sbjct: 2   KLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNS 61

Query: 251 GDMFGEVGALCCRPQIYTY----RTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQ 306
           GD FGE+G               R K   ++  +  +   E      + +  IL     Q
Sbjct: 62  GDFFGELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFRELS----QQDSEILYTLGSQ 117

Query: 307 H-KKLKDLN--IGDLIAESGEE 325
              +L+     +GDL       
Sbjct: 118 MADRLRKTTRKVGDLAFLDVTG 139

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 17/100 (17%)

Query: 338 VASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYII 397
           VA+  +   +D +++     D   + G T LH AA     +C+ +LLK  + V   +   
Sbjct: 181 VANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNE-- 238

Query: 398 FMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCT 437
                           G TAL  A    H     +L    
Sbjct: 239 ---------------AGETALDIARKKHHKECEELLEQAQ 263

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 45.7 bits (108), Expect = 4e-05
 Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 11/103 (10%)

Query: 418 LWEAISSKH-HSIFRILYHCTAISDP----------YTAGDLLCTAEKRNDMSVMEELVK 466
           LW AI ++   S+     +      P               L      +  + +++ +++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195

Query: 467 YGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509
            G ++D+K   G TA+  A   N  + +  L+   + V   N+
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNE 238

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Length = 280

 Score = 51.0 bits (121), Expect = 4e-07
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 7/70 (10%)

Query: 57  YISAMYWSITTMTTVGYGDLHAVNTVE-------MIFIIFYMLFNLGLTAYLIGNMTNLV 109
           ++ + Y+   +++T+G GD                I I  Y+L  L     ++     L 
Sbjct: 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELH 261

Query: 110 VEGTRRTMEF 119
                R M +
Sbjct: 262 ELKKFRKMFY 271

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Length = 301

 Score = 50.8 bits (121), Expect = 5e-07
 Identities = 21/124 (16%), Positives = 36/124 (29%), Gaps = 20/124 (16%)

Query: 40  WLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTA 99
             G V  N    S       A ++S+ TM T+GYG L  +  +    +    L  +   A
Sbjct: 70  ACGDVIENARPGSFT----DAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLA 125

Query: 100 YLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQH 159
                +       T   +     + +                       L  +  +L   
Sbjct: 126 VAASLIYARFTRPTAGVLFSSRMVISDFEG----------------KPTLMMRLANLRIE 169

Query: 160 QLIE 163
           Q+IE
Sbjct: 170 QIIE 173

>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Length = 243

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 24/175 (13%), Positives = 56/175 (32%), Gaps = 20/175 (11%)

Query: 157 NQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIM 216
           + H     +P         H+    V +     +V +++       +   +    + +  
Sbjct: 7   HHHHSSGLVP------RGSHM---IVTQDKALANVFRQMATGAFPPVVETF-ERNKTIFF 56

Query: 217 QNEAPDDVYIIVSGEVEMIDYEME-KEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTL- 274
             +  + VY ++ G V++       +EI V  L+   +FG +  L        Y      
Sbjct: 57  PGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRFYHAVAFT 116

Query: 275 -SQLLRLKTSALIEAMQSKQEDNVSILKNFLQQH-KKLKDLN--IGDLIAESGEE 325
             +LL      + +A+    ++N  +    L+    ++      I  L       
Sbjct: 117 PVELLSAPIEQVEQAL----KENPELSMLMLRGLSSRILQTEMMIETLAHRDMGS 167

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Length = 309

 Score = 50.6 bits (120), Expect = 6e-07
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 55  IRYISAMYWSITTMTTVGYGDLHAVNTVE------MIFIIFYMLFNLGLTAYLIGNMTNL 108
              + A+Y+ I T+TTVG+GD  A              + F++L  L   A ++  + N 
Sbjct: 223 WSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNW 282

Query: 109 VVEGTRRTMEFRNSIEAASN 128
           +   +RRT      + A SN
Sbjct: 283 LRVVSRRTRAEMGGLTAQSN 302

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Length = 321

 Score = 50.5 bits (120), Expect = 8e-07
 Identities = 23/148 (15%), Positives = 44/148 (29%), Gaps = 29/148 (19%)

Query: 16  IILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGD 75
           ++L      LY L +   P            N            A ++S+ T+ TVGYGD
Sbjct: 54  LLLNTAFATLYMLGSA--PI----------ANQFPAGFG----GAFFFSVETLATVGYGD 97

Query: 76  LHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRL 135
           +H             +   +   A   G           +  +   ++  + + V   R 
Sbjct: 98  MHPQTVYAHWIATLEIFVGMSSIALATG----CAFIKMSQPKKRAETLMFSEHAVISMR- 152

Query: 136 PPRLKKQILAYMCLRFKAESLNQHQLIE 163
                      + L F+  +L    ++ 
Sbjct: 153 --------DGKLTLMFRVGNLRNSHMVS 172

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Length = 223

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 60  AMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTN 107
           A++W++ T TTVGYGD+     +  +  I  ML  +     LIG ++N
Sbjct: 169 ALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSN 216

>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 19/145 (13%), Positives = 56/145 (38%), Gaps = 12/145 (8%)

Query: 187 LFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEME-KEIAV 245
           ++  +++E   LL  +++         V  + + P++++ +  G+++++   +  +    
Sbjct: 17  VWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHIS 76

Query: 246 GTLQTGDMFGEVGALCCRPQIYTYRTKTL--SQLLRLKTSALIEAMQSKQEDNVSILKNF 303
             ++ G  FG         +  +     +  S++L +   A+   +    + N S  + F
Sbjct: 77  RIVKPGQFFGMRPYF--AEETCSSTAIAVENSKVLAIPVEAIEALL----KGNTSFCRYF 130

Query: 304 LQQH-KKLKDLN--IGDLIAESGEE 325
           L+   K+L         L  +    
Sbjct: 131 LKALAKELGYAERRTVTLTQKHVRG 155

>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 18/143 (12%), Positives = 45/143 (31%), Gaps = 14/143 (9%)

Query: 183 EKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKE 242
            +  +   +            +++       V       + V+++V G + +     E+E
Sbjct: 3   PRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEERE 62

Query: 243 IAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKN 302
           I++  L +GDMF    + C             +++         + +    +   S+   
Sbjct: 63  ISLFYLTSGDMFCMH-SGC------LVEATERTEVRFADIRTFEQKL----QTCPSMAWG 111

Query: 303 FLQQ-HKKLKDLN--IGDLIAES 322
            +    + L      I DL+   
Sbjct: 112 LIAILGRALTSCMRTIEDLMFHD 134

>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 13/73 (17%), Positives = 32/73 (43%)

Query: 184 KVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEI 243
              L + ++ E    ++ + + +    +  +   N   + V+++ SG V +     +KE 
Sbjct: 8   DTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEF 67

Query: 244 AVGTLQTGDMFGE 256
            +  L+ GD+F  
Sbjct: 68  TLAILEAGDIFCT 80

>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 16/168 (9%), Positives = 43/168 (25%), Gaps = 23/168 (13%)

Query: 162 IEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAP 221
           +E L K  C +I                    E +                 VIM  E  
Sbjct: 3   VEGLGKDFCGAII------------PDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEI 50

Query: 222 DDVYIIVSGEVEMIDYEME-KEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRL 280
             +  +V G++++     +  E  +       + G++                 ++    
Sbjct: 51  TSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGKLYPT---GNNIYATAMEPTRTCWF 107

Query: 281 KTSALIEAMQSKQEDNVSILKNFLQQH-KKLKDLN--IGDLIAESGEE 325
              +L          +  ++    + +  K+      + ++   +   
Sbjct: 108 SEKSLRTVF----RTDEDMIFEIFKNYLTKVAYYARQVAEMNTYNPTI 151

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 60  AMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTN 107
           A +W++ +MTTVGYGD+        I      +  +   A  +  + +
Sbjct: 379 AFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVS 426

>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Length = 238

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 14/128 (10%), Positives = 37/128 (28%), Gaps = 9/128 (7%)

Query: 192 SKEIIVLLVAK-MKAEYIPPREDVIMQNEAPDDVYIIVSGEVEM-IDYEMEKEIAVGTLQ 249
           ++E    L    +K +    +E +  Q +  +    +  G  ++    E    + +   +
Sbjct: 6   AEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYK 65

Query: 250 TGDMFGEVGALCCRPQIYTYRTKTL--SQLLRLKTSALIEAMQSKQEDNVSILKNFLQQH 307
              +             Y         +    +K + L E +      N++      Q  
Sbjct: 66  GAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELL----SKNLTHFFYVFQTL 121

Query: 308 -KKLKDLN 314
            K++    
Sbjct: 122 QKQVSYSL 129

>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB: 3unw_A* 3ss3_A 3ss4_A 3ss5_A* Length = 534

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 325 EDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHE 377
           E GD   S   L   S      L E +  ++ P+  +    T ++   S G +
Sbjct: 475 EGGDQRHSFGPLDYESLQQELALKETVWKKVSPESNEDISTTVVYRMESLGEK 527

>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP, cyclic nucleotide, regulation, auto-inhibition, CDC25 homology domain; 2.7A {Mus musculus} Length = 999

 Score = 41.4 bits (96), Expect = 8e-04
 Identities = 48/306 (15%), Positives = 98/306 (32%), Gaps = 26/306 (8%)

Query: 178 FLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDY 237
            L  V+    F+     ++  +      E +     +  Q +   + Y +++G +++   
Sbjct: 43  RLKGVK---AFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVS 99

Query: 238 EMEKE---IAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQE 294
           E       + + TL  G  FGE   L   P+  T  T+  S+LLR+           +QE
Sbjct: 100 ETSSHQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLRI-----------EQE 147

Query: 295 DNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELLKAR 354
           D  ++ + + Q    L     G +   S  +      +V    +   G    +   + +R
Sbjct: 148 DFKALWEKYRQYMAGLLAPPYGVMETGSNNDRIPDKENVPSEKILRAGKILRI--AILSR 205

Query: 355 LDPDIGDSKGRTPLHIAASKGHEECVLV--LLKHASNVHLRDYIIFMYNLSYDIIILLDM 412
               I D K     +     G E   LV  +++  S VH R   + M+ +  +  +L  +
Sbjct: 206 APHMIRDRKYHLKTYRQCCVGTE---LVDWMIQQTSCVHSRTQAVGMWQVLLEDGVLNHV 262

Query: 413 NGNTALWEAISSKHHSIFRILYH-CTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNV 471
           +      +                     +     + L            +  ++  L  
Sbjct: 263 DQERHFQDKYLFYRFLDDEREDAPLPTEEEKKECDEELQDTMLLLSQMGPDAHMRMILRK 322

Query: 472 DSKDRH 477
               R 
Sbjct: 323 PPGQRT 328

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	602
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.98
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.98
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.98
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.98
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.98
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	99.97
3ukn_A	212	Novel protein similar to vertebrate potassium VOL	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.91
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.91
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.9
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.89
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.88
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.87
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.87
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.87
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.87
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.86
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.86
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.84
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	99.79
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.75
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.74
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	99.71
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	99.7
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	99.69
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	99.69
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	99.68
2z69_A	154	DNR protein; beta barrel, dimerization helix, tran	99.66
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	99.64
4ev0_A	216	Transcription regulator, CRP family; CAMP binding,	99.63
3dn7_A	194	Cyclic nucleotide binding regulatory protein; stru	99.62
3fx3_A	237	Cyclic nucleotide-binding protein; helix_TURN_heli	99.61
3e97_A	231	Transcriptional regulator, CRP/FNR family; YP_6044	99.61
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	99.61
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	99.61
3d0s_A	227	Transcriptional regulatory protein; CAMP receptor	99.6
4h33_A	137	LMO2059 protein; bilayers, KVLM, lipidic cubic pha	99.59
1zyb_A	232	Transcription regulator, CRP family; NP_813211.1,	99.59
3dv8_A	220	Transcriptional regulator, CRP/FNR family; cyclic	99.58
1wgp_A	137	Probable cyclic nucleotide-gated ION channel 6; cy	99.58
4ava_A	333	Lysine acetyltransferase; allosteric regulation, d	99.57
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	99.56
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	99.56
2gau_A	232	Transcriptional regulator, CRP/FNR family; structu	99.55
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	99.55
3dkw_A	227	DNR protein; CRP-FNR, HTH, beta barrel, dimerizati	99.55
3iwz_A	230	CAP-like, catabolite activation-like protein; XCC,	99.55
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	99.54
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	99.51
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	99.51
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	99.5
3ryp_A	210	Catabolite gene activator; CAMP receptor protein (	99.5
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	99.5
2a9h_A	155	Voltage-gated potassium channel; potassium channel	99.49
2fmy_A	220	COOA, carbon monoxide oxidation system transcripti	99.49
2oz6_A	207	Virulence factor regulator; winged helix, helix-tu	99.48
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	99.47
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	99.46
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	99.46
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	99.46
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	99.45
3kcc_A	260	Catabolite gene activator; helix-turn-helix, CAMP,	99.44
1ft9_A	222	Carbon monoxide oxidation system transcription reg	99.44
1o5l_A	213	Transcriptional regulator, CRP family; TM1171, str	99.42
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	99.41
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	99.4
3e6c_C	250	CPRK, cyclic nucleotide-binding protein; CPRK, hal	99.39
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	99.37
2q67_A	114	Potassium channel protein; inverted teepee, helix	99.35
4f7z_A	999	RAP guanine nucleotide exchange factor 4; cyclic n	99.34
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	99.3
2bgc_A	238	PRFA; bacterial infection, human pathogen, transcr	99.3
3la7_A	243	Global nitrogen regulator; activator, DNA-binding,	99.29
3cf6_E	694	RAP guanine nucleotide exchange factor (GEF) 4; EP	99.29
3ouf_A	97	Potassium channel protein; ION channel, membrane,	99.27
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	99.25
4f7z_A	999	RAP guanine nucleotide exchange factor 4; cyclic n	99.23
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	99.19
3b02_A	195	Transcriptional regulator, CRP family; structural	99.12
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	99.07
1xl4_A	301	Inward rectifier potassium channel; integral membr	99.01
2zcw_A	202	TTHA1359, transcriptional regulator, FNR/CRP famil	98.99
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	98.95
3um7_A	309	Potassium channel subfamily K member 4; potassium	98.91
1p7b_A	333	Integral membrane channel and cytosolic domains; t	98.89
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	98.79
3um7_A	309	Potassium channel subfamily K member 4; potassium	98.68
3sya_A	340	G protein-activated inward rectifier potassium CH;	98.66
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	98.62
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	98.59
3spc_A	343	Inward-rectifier K+ channel KIR2.2; PIP, membrane	98.52
1lnq_A	336	MTHK channels, potassium channel related protein;	98.33
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	98.09
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	93.53
3kg2_A	823	Glutamate receptor 2; ION channel, membrane protei	85.14

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=5.8e-38  Score=303.50  Aligned_cols=209  Identities=19%  Similarity=0.188  Sum_probs=183.6

Q ss_pred             hhcccccccccccCCCC---CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhc
Q 038432          310 LKDLNIGDLIAESGEED---GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKH  386 (602)
Q Consensus       310 ~~~~~~~~~l~~~~~~~---~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~  386 (602)
                      .+..+..+.|++.+.+.   .+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus        33 ~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  112 (253)
T 1yyh_A           33 EDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN  112 (253)
T ss_dssp             -------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHS
T ss_pred             CCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            34667777777777654   578899999999999999999999999999999999999999999999999999999999


Q ss_pred             cc-CCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHH
Q 038432          387 AS-NVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEE  463 (602)
Q Consensus       387 g~-~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~  463 (602)
                      |+ +++..+                 ..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..|+.+++++
T Consensus       113 ~~~~~~~~~-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~  175 (253)
T 1yyh_A          113 RATDLDARM-----------------HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV  175 (253)
T ss_dssp             TTSCTTCCC-----------------TTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHH
T ss_pred             CCCCccccC-----------------CCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            87 899887                 8999999999999999999999999999987  779999999999999999999


Q ss_pred             HHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeeccC
Q 038432          464 LVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDD  535 (602)
Q Consensus       464 Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~  535 (602)
                      |+++|+++|.+|..|.||||+|+..|+.+++++|+++|+|++.+|..|.||+|+|+..++.++++++.....
T Consensus       176 Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~  247 (253)
T 1yyh_A          176 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHH  247 (253)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC---
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999877653

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-38  Score=310.31  Aligned_cols=203  Identities=23%  Similarity=0.330  Sum_probs=163.2

Q ss_pred             HHhhhhhhcccccccccccCCC----------CCCCCCchhhhHhhhcCcH-HHHHHHHhcCCCCCCCCCCCchHHHHHH
Q 038432          304 LQQHKKLKDLNIGDLIAESGEE----------DGDPNMSVNLLTVASTGNA-AFLDELLKARLDPDIGDSKGRTPLHIAA  372 (602)
Q Consensus       304 l~~~~~~~~~~~~~~l~~~~~~----------~~~~~g~t~L~~A~~~g~~-~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~  372 (602)
                      +..+...++.+.++.|++.+.+          ..+..|.||||.|+..+.. .+++.|++.|+++|.+|.+|+||||+||
T Consensus        15 L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~   94 (269)
T 4b93_B           15 LLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAA   94 (269)
T ss_dssp             HHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            4456666777777777765532          2566789999999988776 5789999999999999999999999999


Q ss_pred             hcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHH
Q 038432          373 SKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLC  450 (602)
Q Consensus       373 ~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~  450 (602)
                      ..|+.++|++|++.|++++..+                 ..|.||+|+|+..++.+++++|+++|++++.  ..|.||||
T Consensus        95 ~~g~~~~v~~Ll~~~a~~~~~~-----------------~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~  157 (269)
T 4b93_B           95 LHGRADLIPLLLKHGANAGARN-----------------ADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLI  157 (269)
T ss_dssp             HTTCTTHHHHHHHTTCCTTCCC-----------------TTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHH
T ss_pred             HcCcHHHHHHHHhcCCCcCccC-----------------CCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            9999999999999999999998                 9999999999999999999999999999987  78999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHH
Q 038432          451 TAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQK  523 (602)
Q Consensus       451 ~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~  523 (602)
                      +|+..|+.+++++|+++|+|+|.+|..|+||||+|+..|+.++|++|+++|||++.+|.+|+||||+|+..++
T Consensus       158 ~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          158 YACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             HHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred             HHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999986654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2.8e-37  Score=292.78  Aligned_cols=207  Identities=19%  Similarity=0.179  Sum_probs=194.4

Q ss_pred             cccccccccccCCCC---CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhccc
Q 038432          312 DLNIGDLIAESGEED---GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHAS  388 (602)
Q Consensus       312 ~~~~~~~l~~~~~~~---~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~  388 (602)
                      ..++.+.|++.+.+.   .+.+|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++++
T Consensus         3 ~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~   82 (223)
T 2f8y_A            3 APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA   82 (223)
T ss_dssp             --CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTT
T ss_pred             cHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            456677777777654   46789999999999999999999999999999999999999999999999999999999987


Q ss_pred             -CCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHH
Q 038432          389 -NVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELV  465 (602)
Q Consensus       389 -~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll  465 (602)
                       +++..+                 ..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..|+.+++++|+
T Consensus        83 ~~~~~~~-----------------~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  145 (223)
T 2f8y_A           83 TDLDARM-----------------HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL  145 (223)
T ss_dssp             SCTTCCC-----------------TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred             CCcccCC-----------------CCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence             888887                 8999999999999999999999999999987  77999999999999999999999


Q ss_pred             HcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeeccC
Q 038432          466 KYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDD  535 (602)
Q Consensus       466 ~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~  535 (602)
                      ++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..++.+++++|...+.
T Consensus       146 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~  215 (223)
T 2f8y_A          146 KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL  215 (223)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999988774

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.3e-37  Score=296.71  Aligned_cols=192  Identities=26%  Similarity=0.309  Sum_probs=184.6

Q ss_pred             CCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchh
Q 038432          326 DGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYD  405 (602)
Q Consensus       326 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~  405 (602)
                      ..+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++..+           
T Consensus        35 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-----------  103 (231)
T 3aji_A           35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVN-----------  103 (231)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-----------
T ss_pred             cCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCC-----------
Confidence            467889999999999999999999999999999999999999999999999999999999999999988           


Q ss_pred             HHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHH
Q 038432          406 IIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIE  483 (602)
Q Consensus       406 ~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh  483 (602)
                            ..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||
T Consensus       104 ------~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  177 (231)
T 3aji_A          104 ------QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLH  177 (231)
T ss_dssp             ------TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHH
T ss_pred             ------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHH
Confidence                  8999999999999999999999999999987  67999999999999999999999999999999999999999


Q ss_pred             HHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432          484 IAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD  534 (602)
Q Consensus       484 ~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~  534 (602)
                      +|+..|+.+++++|+++|+|++.+|..|.||+|+|+..++.+++++|..++
T Consensus       178 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~  228 (231)
T 3aji_A          178 LACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEE  228 (231)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccc
Confidence            999999999999999999999999999999999999999988888877654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=3.8e-37  Score=302.81  Aligned_cols=194  Identities=20%  Similarity=0.232  Sum_probs=156.7

Q ss_pred             CCCCCCchhhhHhhhcCcHHHHHHHHhcCCC---CCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhcc
Q 038432          326 DGDPNMSVNLLTVASTGNAAFLDELLKARLD---PDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNL  402 (602)
Q Consensus       326 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~---~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~  402 (602)
                      ..+.+|.||||+||..|+.+++++|++.|++   +|.+|..|+||||+|+..|+.+++++|+++|++++..+        
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~--------   75 (282)
T 1oy3_D            4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE--------   75 (282)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCC--------
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC--------
Confidence            3567788888888888888888888888777   67788888888888888888888888888888888877        


Q ss_pred             chhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCC-------------------------------------------
Q 038432          403 SYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAI-------------------------------------------  439 (602)
Q Consensus       403 ~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~-------------------------------------------  439 (602)
                               ..|.||||+|+..|+.+++++|+++|++                                           
T Consensus        76 ---------~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (282)
T 1oy3_D           76 ---------RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDED  146 (282)
T ss_dssp             ---------TTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCC
T ss_pred             ---------CCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhh
Confidence                     7888888888888888888888887754                                           


Q ss_pred             ----CCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCC-CcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCC
Q 038432          440 ----SDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRH-GRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEF  512 (602)
Q Consensus       440 ----~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~-g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~  512 (602)
                          ++.  ..|.||||+|+..|+.+++++|+++|++++.++.. |+||||+|+..|+.+++++|+++|+|++.+|..|.
T Consensus       147 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~  226 (282)
T 1oy3_D          147 WRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGR  226 (282)
T ss_dssp             GGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             hhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCC
Confidence                222  46778888888888888888888888888887754 88888888888888888888888888888888888


Q ss_pred             ChhhHHHHHHHHhhhceeeeccCC
Q 038432          513 SSTNLNDMLQKREIGHRITVHDDN  536 (602)
Q Consensus       513 t~l~~a~~~~~~~~~~~l~~~~~~  536 (602)
                      ||||+|+..++.++++.|+.++++
T Consensus       227 tpL~~A~~~~~~~~v~~Ll~~ga~  250 (282)
T 1oy3_D          227 TPLGSALLRPNPILARLLRAHGAP  250 (282)
T ss_dssp             CHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             CHHHHHHHcCCcHHHHHHHHcCCC
Confidence            888888888887777777776643

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=7.4e-37  Score=293.44  Aligned_cols=213  Identities=20%  Similarity=0.205  Sum_probs=185.6

Q ss_pred             Hhhhhhhcccccccccc----cC--CCCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChH
Q 038432          305 QQHKKLKDLNIGDLIAE----SG--EEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEE  378 (602)
Q Consensus       305 ~~~~~~~~~~~~~~l~~----~~--~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~  378 (602)
                      ..+...++.+..+.+++    .+  .+..+..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+
T Consensus        14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~   93 (241)
T 1k1a_A           14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPT   93 (241)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH
Confidence            33444444444444443    23  3346778999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccc----CCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC---CCcchhHHH
Q 038432          379 CVLVLLKHAS----NVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP---YTAGDLLCT  451 (602)
Q Consensus       379 ~v~~Ll~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~---~~g~t~L~~  451 (602)
                      ++++|+++++    +++..+                 ..|.||||+|+..|+.+++++|+++|++++.   ..|.||||+
T Consensus        94 ~~~~Ll~~~~~~~~~~~~~~-----------------~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~  156 (241)
T 1k1a_A           94 CLRALLDSAAPGTLDLEARN-----------------YDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIH  156 (241)
T ss_dssp             HHHHHHHHSCTTSCCTTCCC-----------------TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHH
T ss_pred             HHHHHHHcCCCccccccccC-----------------cCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHH
Confidence            9999999987    777776                 8999999999999999999999999999887   469999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceee
Q 038432          452 AEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRIT  531 (602)
Q Consensus       452 A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~  531 (602)
                      |+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|.||+|+|+..++.++++.+.
T Consensus       157 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~  236 (241)
T 1k1a_A          157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKA  236 (241)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC--
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             ecc
Q 038432          532 VHD  534 (602)
Q Consensus       532 ~~~  534 (602)
                      ...
T Consensus       237 ~~~  239 (241)
T 1k1a_A          237 TRP  239 (241)
T ss_dssp             ---
T ss_pred             cCC
Confidence            664

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=8.1e-37  Score=300.69  Aligned_cols=196  Identities=22%  Similarity=0.242  Sum_probs=185.5

Q ss_pred             ccCCCCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHh
Q 038432          321 ESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMY  400 (602)
Q Consensus       321 ~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~  400 (602)
                      ......++.+|+||||+||..|+.+++++|++.|+++|.+|.+|+||||+|+..|+.+++++|+++|++++..|      
T Consensus        49 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~------  122 (285)
T 3d9h_A           49 SNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT------  122 (285)
T ss_dssp             CCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCC------
T ss_pred             hCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCC------
Confidence            33445578899999999999999999999999999999999999999999999999999999999999999998      


Q ss_pred             ccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC-CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCc
Q 038432          401 NLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP-YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGR  479 (602)
Q Consensus       401 ~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~  479 (602)
                                 ..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.+++++|+++|++++.+|..|.
T Consensus       123 -----------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~  191 (285)
T 3d9h_A          123 -----------ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG  191 (285)
T ss_dssp             -----------TTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTB
T ss_pred             -----------CCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence                       9999999999999999999999999999887 7799999999999999999999999999999999999


Q ss_pred             CHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432          480 TAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD  534 (602)
Q Consensus       480 TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~  534 (602)
                      ||||+|+..|+.+++++|+++|++++. |..|.||||+|+..++.++++.|+..+
T Consensus       192 t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g  245 (285)
T 3d9h_A          192 TPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFG  245 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            999999999999999999999999994 999999999999999999888887765

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=8.7e-38  Score=302.29  Aligned_cols=221  Identities=21%  Similarity=0.231  Sum_probs=169.0

Q ss_pred             CCCCCCCchhhhHhhhcC-------------cHHHHHHHHhcCCCCCC-CCCCCchHHHHHHhcCChHHHHHHHhcccCC
Q 038432          325 EDGDPNMSVNLLTVASTG-------------NAAFLDELLKARLDPDI-GDSKGRTPLHIAASKGHEECVLVLLKHASNV  390 (602)
Q Consensus       325 ~~~~~~g~t~L~~A~~~g-------------~~~~~~~Ll~~g~~~n~-~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~  390 (602)
                      +.++.+|.||||+|+..|             +.++++.|++.|++++. .|..|+||||+|+..|+.++|++|+++|+++
T Consensus         4 n~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~   83 (253)
T 1yyh_A            4 NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA   83 (253)
T ss_dssp             ------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            346788999999999977             89999999999999865 4899999999999999999999999999999


Q ss_pred             CchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCC-CCCC--CCcchhHHHHHhcCCHHHHHHHHHc
Q 038432          391 HLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTA-ISDP--YTAGDLLCTAEKRNDMSVMEELVKY  467 (602)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~-~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~  467 (602)
                      +..+                 ..|.||||+|+..|+.+++++|+++|+ +++.  ..|.||||+|+..|+.+++++|+++
T Consensus        84 ~~~~-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  146 (253)
T 1yyh_A           84 NIQD-----------------NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS  146 (253)
T ss_dssp             TCCC-----------------TTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHT
T ss_pred             CCCC-----------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHc
Confidence            9998                 999999999999999999999999987 6665  7899999999999999999999999


Q ss_pred             CCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeeccCCCchhHHHhhhh
Q 038432          468 GLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNSTQNEVLLKKL  547 (602)
Q Consensus       468 ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  547 (602)
                      |+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.++++.|+.++.            
T Consensus       147 g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga------------  214 (253)
T 1yyh_A          147 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA------------  214 (253)
T ss_dssp             TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC------------
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC------------
Confidence            99999999999999999999999999999999999999999999999999999999998888887762            


Q ss_pred             hhhhhhhhcCCCCCCcceeEEEecCCCccccc
Q 038432          548 EIIDFEAKEGKSKGGNCQRVSIYRGHPLVRKQ  579 (602)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  579 (602)
                       +.    ......|.++.++++..||..+...
T Consensus       215 -~~----~~~d~~g~tpl~~A~~~g~~~i~~~  241 (253)
T 1yyh_A          215 -NR----DITDHMDRLPRDIAQERMHHDIVRL  241 (253)
T ss_dssp             -CT----TCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             -Cc----cccccCCCCHHHHHHHcCCHHHHHH
Confidence             22    2234467888888888888654433

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1.3e-36  Score=289.97  Aligned_cols=188  Identities=21%  Similarity=0.226  Sum_probs=178.5

Q ss_pred             CCchhhhHhhhcCcHHHHHHHHhc-CCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCC-----CchhhHHHHhccc
Q 038432          330 NMSVNLLTVASTGNAAFLDELLKA-RLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNV-----HLRDYIIFMYNLS  403 (602)
Q Consensus       330 ~g~t~L~~A~~~g~~~~~~~Ll~~-g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~-----~~~~~~~~~~~~~  403 (602)
                      .|+||||.|+..|+.++++.|++. |+++|.+|..|+||||+|+..|+.+++++|+++|+++     +..|         
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~---------   72 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSEL---------   72 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTT---------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccC---------
Confidence            478999999999999999999997 9999999999999999999999999999999999987     5555         


Q ss_pred             hhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCCC---------------CcchhHHHHHhcCCHHHHHHHHHcC
Q 038432          404 YDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPY---------------TAGDLLCTAEKRNDMSVMEELVKYG  468 (602)
Q Consensus       404 ~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~---------------~g~t~L~~A~~~~~~~~~~~Ll~~g  468 (602)
                              ..|.||||+|+..|+.+++++|+++|++++..               .|.||||+|+..|+.+++++|+++|
T Consensus        73 --------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  144 (232)
T 2rfa_A           73 --------YEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG  144 (232)
T ss_dssp             --------TTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTT
T ss_pred             --------CCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence                    78999999999999999999999999999872               5999999999999999999999999


Q ss_pred             CCCCCCCCCCcCHHHHHHHcCcHHHH----HHHHHCCCCc------ccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432          469 LNVDSKDRHGRTAIEIAMAENNVEMV----NFLVMNGSDV------VGANKCEFSSTNLNDMLQKREIGHRITVHD  534 (602)
Q Consensus       469 a~~n~~d~~g~TpLh~A~~~~~~~iv----~~Ll~~ga~~------~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~  534 (602)
                      +|+|.+|.+|+||||+|+..|+.+++    ++|+++|+++      +.+|..|.||||+|+..++.++++.|+.++
T Consensus       145 a~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g  220 (232)
T 2rfa_A          145 ADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR  220 (232)
T ss_dssp             CCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            99999999999999999999999988    9999999998      689999999999999999999999988776

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=3.1e-36  Score=270.62  Aligned_cols=157  Identities=29%  Similarity=0.455  Sum_probs=148.0

Q ss_pred             hhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhc
Q 038432          333 VNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDM  412 (602)
Q Consensus       333 t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~  412 (602)
                      ++|+.||+.|+.++++.|++.|+|+|.+|.+|+||||+|+..++.+++++|+++|++++.+|                 .
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d-----------------~   68 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD-----------------S   68 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-----------------T
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhc-----------------c
Confidence            57999999999999999999999999999999999999999999999999999999999998                 9


Q ss_pred             cCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCc
Q 038432          413 NGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENN  490 (602)
Q Consensus       413 ~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~  490 (602)
                      .|.||||+|+..|+.+++++|+++|++++.  ..|+||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|+..|+
T Consensus        69 ~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~  148 (169)
T 4gpm_A           69 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGN  148 (169)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence            999999999999999999999999999987  789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCccc
Q 038432          491 VEMVNFLVMNGSDVVG  506 (602)
Q Consensus       491 ~~iv~~Ll~~ga~~~~  506 (602)
                      .+++++|+++|||++.
T Consensus       149 ~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          149 EEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             HHHHHHHHTC------
T ss_pred             HHHHHHHHHCCCCcCC
Confidence            9999999999999974

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2.3e-36  Score=289.25  Aligned_cols=201  Identities=23%  Similarity=0.244  Sum_probs=123.3

Q ss_pred             hhhhhcccccccccccCCCC--CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHH
Q 038432          307 HKKLKDLNIGDLIAESGEED--GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLL  384 (602)
Q Consensus       307 ~~~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll  384 (602)
                      +...+..+..+.|++.+.+.  .+..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+
T Consensus        18 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll   97 (237)
T 3b7b_A           18 AAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLL   97 (237)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            33334444444444444322  3445566666666666666666666666666666666666666666666666666666


Q ss_pred             hcc-cCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHH
Q 038432          385 KHA-SNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVM  461 (602)
Q Consensus       385 ~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~  461 (602)
                      ++| ++++..+                 ..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..|+.+++
T Consensus        98 ~~~~~~~~~~~-----------------~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~  160 (237)
T 3b7b_A           98 SNGQMDVNCQD-----------------DGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIA  160 (237)
T ss_dssp             TTTCCCTTCCC-----------------TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHH
T ss_pred             hCCCCCcccCC-----------------CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHH
Confidence            655 5555554                 5666666666666666666666666666655  4566666666666666666


Q ss_pred             HHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHH
Q 038432          462 EELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKR  524 (602)
Q Consensus       462 ~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~  524 (602)
                      ++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+|++.+|..|.||+|+|+..++.
T Consensus       161 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~  223 (237)
T 3b7b_A          161 EILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQV  223 (237)
T ss_dssp             HHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHH
T ss_pred             HHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHH
Confidence            666666666666666666666666666666666666666666666666666666666555543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.7e-36  Score=298.16  Aligned_cols=220  Identities=19%  Similarity=0.152  Sum_probs=172.3

Q ss_pred             HHhhhhhhcccccccccccCC-----CCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChH
Q 038432          304 LQQHKKLKDLNIGDLIAESGE-----EDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEE  378 (602)
Q Consensus       304 l~~~~~~~~~~~~~~l~~~~~-----~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~  378 (602)
                      +..+...+..+..+.|++.+.     +.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus        13 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~   92 (282)
T 1oy3_D           13 LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHT   92 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcc
Confidence            444555566666666665443     346788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccCCCchhhHHHH------------------------------hccchhHHHHhhccCCcHHHHHHHcCChh
Q 038432          379 CVLVLLKHASNVHLRDYIIFM------------------------------YNLSYDIIILLDMNGNTALWEAISSKHHS  428 (602)
Q Consensus       379 ~v~~Ll~~g~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~g~tpLh~A~~~~~~~  428 (602)
                      ++++|+++|++.+........                              .......++..+..|.||||+|+..|+.+
T Consensus        93 ~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~  172 (282)
T 1oy3_D           93 CACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAE  172 (282)
T ss_dssp             HHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             hhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHH
Confidence            999999998774332200000                              00000112334688999999999999999


Q ss_pred             HHHHHHhcCCCCCCC---CcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcc
Q 038432          429 IFRILYHCTAISDPY---TAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVV  505 (602)
Q Consensus       429 ~~~~Ll~~g~~~~~~---~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~  505 (602)
                      ++++|+++|++++..   .|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++||+++
T Consensus       173 ~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  252 (282)
T 1oy3_D          173 MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP  252 (282)
T ss_dssp             HHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcC
Confidence            999999999999882   39999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCChhhHHHHHHH
Q 038432          506 GANKCEFSSTNLNDMLQK  523 (602)
Q Consensus       506 ~~d~~g~t~l~~a~~~~~  523 (602)
                      .+|..|.||+++|.....
T Consensus       253 ~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          253 EDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             CCC---------------
T ss_pred             cCCCcccccccccCCccc
Confidence            999999999999976543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=5.3e-36  Score=286.80  Aligned_cols=216  Identities=18%  Similarity=0.181  Sum_probs=197.5

Q ss_pred             CCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccch
Q 038432          325 EDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSY  404 (602)
Q Consensus       325 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~  404 (602)
                      +.++.+|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..+          
T Consensus         5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~----------   74 (237)
T 3b7b_A            5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKD----------   74 (237)
T ss_dssp             CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCC----------
T ss_pred             ccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCC----------
Confidence            3467889999999999999999999999999999999999999999999999999999999999999988          


Q ss_pred             hHHHHhhccCCcHHHHHHHcCChhHHHHHHhcC-CCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCH
Q 038432          405 DIIILLDMNGNTALWEAISSKHHSIFRILYHCT-AISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTA  481 (602)
Q Consensus       405 ~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g-~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~Tp  481 (602)
                             ..|.||||+|+..|+.+++++|+++| ++++.  ..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus        75 -------~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  147 (237)
T 3b7b_A           75 -------AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENIC  147 (237)
T ss_dssp             -------TTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             -------CCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCH
Confidence                   89999999999999999999999999 67765  779999999999999999999999999999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeeccCCCchhHHHhhhhhhhhhhhhcCCCCC
Q 038432          482 IEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEGKSKG  561 (602)
Q Consensus       482 Lh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  561 (602)
                      ||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.++++.|..++.+             .    ......|
T Consensus       148 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad-------------~----~~~d~~g  210 (237)
T 3b7b_A          148 LHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD-------------V----TLKNKEG  210 (237)
T ss_dssp             HHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-------------T----TCCCTTS
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCC-------------C----CccCCCC
Confidence            9999999999999999999999999999999999999999999988888776632             2    2234466


Q ss_pred             CcceeEEEecCCC
Q 038432          562 GNCQRVSIYRGHP  574 (602)
Q Consensus       562 ~~~~~~~~~~~~~  574 (602)
                      .++.++++..|+.
T Consensus       211 ~t~l~~A~~~~~~  223 (237)
T 3b7b_A          211 ETPLQCASLNSQV  223 (237)
T ss_dssp             CCHHHHSCTTCHH
T ss_pred             CCHHHHHHHHHHH
Confidence            7777777776654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=7.5e-36  Score=286.43  Aligned_cols=215  Identities=19%  Similarity=0.201  Sum_probs=192.3

Q ss_pred             CCCCCCchhhhHhhhcCcHHHHHHHHh----cCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhc
Q 038432          326 DGDPNMSVNLLTVASTGNAAFLDELLK----ARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYN  401 (602)
Q Consensus       326 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~----~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~  401 (602)
                      .++.+|.||||+||..|+.++++.|++    .|.++|..|..|.||||+|+..|+.+++++|+++|++++..+       
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-------   76 (241)
T 1k1a_A            4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALD-------   76 (241)
T ss_dssp             ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-------
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccC-------
Confidence            457889999999999999999999997    799999999999999999999999999999999999999998       


Q ss_pred             cchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCC----CCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCC
Q 038432          402 LSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTA----ISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKD  475 (602)
Q Consensus       402 ~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~----~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d  475 (602)
                                ..|.||||+|+..|+.+++++|+++++    +++.  ..|.||||+|+..|+.+++++|+++|++++..|
T Consensus        77 ----------~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~  146 (241)
T 1k1a_A           77 ----------RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVD  146 (241)
T ss_dssp             ----------TTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             ----------CCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCccccc
Confidence                      899999999999999999999999987    5555  789999999999999999999999999999999


Q ss_pred             -CCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeeccCCCchhHHHhhhhhhhhhhh
Q 038432          476 -RHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNSTQNEVLLKKLEIIDFEA  554 (602)
Q Consensus       476 -~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  554 (602)
                       ..|.||||+|+..|+.+++++|+++|+|++.+|..|.||||+|+..++.++++.|+..+.             +.+.  
T Consensus       147 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-------------~~~~--  211 (241)
T 1k1a_A          147 IKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA-------------DSSL--  211 (241)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC-------------CTTC--
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCC-------------CCCC--
Confidence             899999999999999999999999999999999999999999999999999888887763             2222  


Q ss_pred             hcCCCCCCcceeEEEecCCC
Q 038432          555 KEGKSKGGNCQRVSIYRGHP  574 (602)
Q Consensus       555 ~~~~~~~~~~~~~~~~~~~~  574 (602)
                        ....|.++.++++..|+.
T Consensus       212 --~~~~g~tpl~~A~~~~~~  229 (241)
T 1k1a_A          212 --KNCHNDTPLMVARSRRVI  229 (241)
T ss_dssp             --CCTTSCCTTTTCSSHHHH
T ss_pred             --cCCCCCCHHHHHHhcCcH
Confidence              233556666666665553

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-35  Score=291.36  Aligned_cols=234  Identities=18%  Similarity=0.252  Sum_probs=164.1

Q ss_pred             HHHhhhhhhcccccccccccCCCC--C-CCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHH
Q 038432          303 FLQQHKKLKDLNIGDLIAESGEED--G-DPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEEC  379 (602)
Q Consensus       303 ll~~~~~~~~~~~~~~l~~~~~~~--~-~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~  379 (602)
                      .+..+...++.+..+.|++.+.+.  . +..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.++
T Consensus         8 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   87 (285)
T 1wdy_A            8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKL   87 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHH
Confidence            344555666666666666666544  2 5567788888888888888888888888888888888888888888888888


Q ss_pred             HHHHHhcccCCCchh------hHHHHhccchhHHHHh--------------------hccCCcHHHHHHHcCChhHHHHH
Q 038432          380 VLVLLKHASNVHLRD------YIIFMYNLSYDIIILL--------------------DMNGNTALWEAISSKHHSIFRIL  433 (602)
Q Consensus       380 v~~Ll~~g~~~~~~~------~~~~~~~~~~~~~~~~--------------------~~~g~tpLh~A~~~~~~~~~~~L  433 (602)
                      +++|+++|++++..+      ...+...++.+++..+                    +..|.||||+|+..|+.+++++|
T Consensus        88 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  167 (285)
T 1wdy_A           88 LKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL  167 (285)
T ss_dssp             HHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHH
Confidence            888888888887665      2223333333333221                    45566777777777777777777


Q ss_pred             Hhc-CCCCCC--CCcchhHHHHHhcCC----HHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHH-CCCCcc
Q 038432          434 YHC-TAISDP--YTAGDLLCTAEKRND----MSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVM-NGSDVV  505 (602)
Q Consensus       434 l~~-g~~~~~--~~g~t~L~~A~~~~~----~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~-~ga~~~  505 (602)
                      ++. |++++.  ..|.||||.|+..++    .+++++|+++|+++|.+|..|+||||+|+..|+.+++++|++ .|++++
T Consensus       168 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~  247 (285)
T 1wdy_A          168 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN  247 (285)
T ss_dssp             HHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTT
T ss_pred             HHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCcc
Confidence            765 666665  567777777777777    677777777777777777777777777777777777777777 677777


Q ss_pred             cCCCCCCChhhHHHHHHHHhhhceeeeccCC
Q 038432          506 GANKCEFSSTNLNDMLQKREIGHRITVHDDN  536 (602)
Q Consensus       506 ~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~~  536 (602)
                      .+|..|.||||+|+..++.++++.|+.++++
T Consensus       248 ~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~  278 (285)
T 1wdy_A          248 DTDSDGKTALLLAVELKLKKIAELLCKRGAS  278 (285)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHSSC
T ss_pred             ccCCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Confidence            7777777777777777777777766666543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.2e-35  Score=301.73  Aligned_cols=219  Identities=21%  Similarity=0.195  Sum_probs=197.7

Q ss_pred             HHHHHhhhhhhccccccccccc-CC--CCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCCh
Q 038432          301 KNFLQQHKKLKDLNIGDLIAES-GE--EDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHE  377 (602)
Q Consensus       301 ~~ll~~~~~~~~~~~~~~l~~~-~~--~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~  377 (602)
                      ...+..+...++.+..+.++.. +.  +..+..|.||||+|+..|+.+++++|++.|+++|.+|..|.||||+|+..|+.
T Consensus        25 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~  104 (351)
T 3utm_A           25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHY  104 (351)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             chhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCH
Confidence            3455666667777655554443 43  34678899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC---------------
Q 038432          378 ECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP---------------  442 (602)
Q Consensus       378 ~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~---------------  442 (602)
                      +++++|+++|++++..+                 ..|.||||+|+..|+.+++++|+++|++++.               
T Consensus       105 ~iv~~Ll~~g~~~~~~~-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~  167 (351)
T 3utm_A          105 EVTELLLKHGACVNAMD-----------------LWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTP  167 (351)
T ss_dssp             HHHHHHHHTTCCTTCCC-----------------TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSH
T ss_pred             HHHHHHHHCCCCCCCCC-----------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhh
Confidence            99999999999999998                 8999999999999999999999999998763               


Q ss_pred             -----------------------------------------CCcchhHHHHHhc---CCHHHHHHHHHcCCCCCCCCCCC
Q 038432          443 -----------------------------------------YTAGDLLCTAEKR---NDMSVMEELVKYGLNVDSKDRHG  478 (602)
Q Consensus       443 -----------------------------------------~~g~t~L~~A~~~---~~~~~~~~Ll~~ga~~n~~d~~g  478 (602)
                                                               ..|.||||+|+..   +..+++++|+++|+++|.+|..|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g  247 (351)
T 3utm_A          168 ELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDF  247 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTC
T ss_pred             hhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCC
Confidence                                                     3567999999999   55899999999999999999999


Q ss_pred             cCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeeccCC
Q 038432          479 RTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDN  536 (602)
Q Consensus       479 ~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~~  536 (602)
                      +||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.++++.|+..+.+
T Consensus       248 ~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad  305 (351)
T 3utm_A          248 MTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD  305 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999999999888744

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=8.9e-37  Score=300.28  Aligned_cols=207  Identities=18%  Similarity=0.104  Sum_probs=189.1

Q ss_pred             cccccccccccCCCCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCC
Q 038432          312 DLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVH  391 (602)
Q Consensus       312 ~~~~~~~l~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~  391 (602)
                      ..++.++|.+...+.++.+|.||||+|+..|+.+++++|++.|+++|..|  |+||||+|+..|+.+++++|+++|++++
T Consensus        12 ~~~v~~lL~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~   89 (285)
T 3kea_A           12 SKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDS   89 (285)
T ss_dssp             HHHHHHHHHSTTTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHHhCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            33444455555566788999999999999999999999999999999884  9999999999999999999999999999


Q ss_pred             chhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCc-chhHHHHHhcCCHHHHHHHHHcC
Q 038432          392 LRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTA-GDLLCTAEKRNDMSVMEELVKYG  468 (602)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g-~t~L~~A~~~~~~~~~~~Ll~~g  468 (602)
                      ..|                 ..|.||||+|+..|+.+++++|+++|++++.  ..| .||||+|+..|+.+++++|+++|
T Consensus        90 ~~d-----------------~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g  152 (285)
T 3kea_A           90 QFD-----------------DKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI  152 (285)
T ss_dssp             CCC-----------------TTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTS
T ss_pred             CcC-----------------CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence            998                 8999999999999999999999999999987  566 79999999999999999999999


Q ss_pred             CCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCCh-hhHHHHHHHHhhhceeeeccCCCc
Q 038432          469 LNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSS-TNLNDMLQKREIGHRITVHDDNST  538 (602)
Q Consensus       469 a~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~-l~~a~~~~~~~~~~~l~~~~~~~~  538 (602)
                      +++... ..|.||||+|+..|+.+++++|+++|+|++.+|..|.|| ||+|+..++.++++.|+.++.+..
T Consensus       153 ~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~  222 (285)
T 3kea_A          153 PSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY  222 (285)
T ss_dssp             CTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCST
T ss_pred             Cccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            987433 389999999999999999999999999999999999998 999999999999999998876554

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.9e-36  Score=295.83  Aligned_cols=207  Identities=16%  Similarity=0.146  Sum_probs=185.4

Q ss_pred             hhhhhhcccccccccccCCCC--CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHH
Q 038432          306 QHKKLKDLNIGDLIAESGEED--GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVL  383 (602)
Q Consensus       306 ~~~~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~L  383 (602)
                      .+...+..+..+.|++.+.+.  .+.+|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|
T Consensus        65 ~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~L  144 (285)
T 3d9h_A           65 EAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLL  144 (285)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHH
Confidence            344445555555555555433  678899999999999999999999999999999999999999999999999999999


Q ss_pred             HhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHH
Q 038432          384 LKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVM  461 (602)
Q Consensus       384 l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~  461 (602)
                      +++|++++..                  ..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..|+.+++
T Consensus       145 l~~g~~~~~~------------------~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v  206 (285)
T 3d9h_A          145 LQHGASVQPE------------------SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACV  206 (285)
T ss_dssp             HHTTCCSSCS------------------CTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHH
T ss_pred             HHCCCCCCCC------------------CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHH
Confidence            9999999865                  4599999999999999999999999999987  7899999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeec
Q 038432          462 EELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVH  533 (602)
Q Consensus       462 ~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~  533 (602)
                      ++|+++|+++|. |..|+||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|+  ++.++++.|..+
T Consensus       207 ~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~  275 (285)
T 3d9h_A          207 KKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLER  275 (285)
T ss_dssp             HHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHH
T ss_pred             HHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHh
Confidence            999999999995 899999999999999999999999999999999999999999998  445566666555

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.9e-35  Score=275.23  Aligned_cols=188  Identities=20%  Similarity=0.267  Sum_probs=177.9

Q ss_pred             CCCchhhhHhhhcCcHHHHHHHHhcCC-CCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHH
Q 038432          329 PNMSVNLLTVASTGNAAFLDELLKARL-DPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDII  407 (602)
Q Consensus       329 ~~g~t~L~~A~~~g~~~~~~~Ll~~g~-~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~  407 (602)
                      ..+.||||.|+..|+.+.++.|++.+. ++|..|..|.||||+|+..|+.+++++|+++|++++..+             
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-------------   69 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQN-------------   69 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-------------
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC-------------
Confidence            456899999999999999999999765 999999999999999999999999999999999999998             


Q ss_pred             HHhhccCCcHHHHHHHcCChhHHHHHH-hcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCcCHHH
Q 038432          408 ILLDMNGNTALWEAISSKHHSIFRILY-HCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYG-LNVDSKDRHGRTAIE  483 (602)
Q Consensus       408 ~~~~~~g~tpLh~A~~~~~~~~~~~Ll-~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~g-a~~n~~d~~g~TpLh  483 (602)
                          ..|.||||+|+..|+.+++++|+ ..+++++.  ..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||
T Consensus        70 ----~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~  145 (201)
T 3hra_A           70 ----SISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALI  145 (201)
T ss_dssp             ----TTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHH
T ss_pred             ----CCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHH
Confidence                89999999999999999999999 55667776  77999999999999999999999999 999999999999999


Q ss_pred             HHHHcCc-----HHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeec
Q 038432          484 IAMAENN-----VEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVH  533 (602)
Q Consensus       484 ~A~~~~~-----~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~  533 (602)
                      +|+..++     .+++++|+++|+|++.+|..|.||||+|+..++.++++.|..+
T Consensus       146 ~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          146 EAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             HHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred             HHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence            9999998     9999999999999999999999999999999999999888765

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-35  Score=303.84  Aligned_cols=217  Identities=21%  Similarity=0.268  Sum_probs=198.1

Q ss_pred             HHHHhhhhhhccccccccc--------ccCCC--CCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHH
Q 038432          302 NFLQQHKKLKDLNIGDLIA--------ESGEE--DGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIA  371 (602)
Q Consensus       302 ~ll~~~~~~~~~~~~~~l~--------~~~~~--~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A  371 (602)
                      +.+..+...+..+..+.|+        +.+.+  ..+.+|.||||+|+..|+.+++++|++.|++++..|..|.||||+|
T Consensus       127 t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A  206 (373)
T 2fo1_E          127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQA  206 (373)
T ss_dssp             CHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHH
T ss_pred             CHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHH
Confidence            3455566666776666665        45543  4778999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHhcc---cCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcC---ChhHHHHHHhcCCCCCC---
Q 038432          372 ASKGHEECVLVLLKHA---SNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSK---HHSIFRILYHCTAISDP---  442 (602)
Q Consensus       372 ~~~g~~~~v~~Ll~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~---~~~~~~~Ll~~g~~~~~---  442 (602)
                      +..|+.+++++|+++|   ++++..|                 ..|.||||+|+..+   +.+++++|+++|++++.   
T Consensus       207 ~~~g~~~~v~~Ll~~~~~~~~~~~~d-----------------~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~  269 (373)
T 2fo1_E          207 AANRDFGMMVYMLNSTKLKGDIEELD-----------------RNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA  269 (373)
T ss_dssp             HHTTCHHHHHHHTTSHHHHHTTSCCC-----------------TTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSG
T ss_pred             HHCCCHHHHHHHHhcCccccChhhcC-----------------CCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccc
Confidence            9999999999999998   8999988                 99999999999998   89999999999999874   


Q ss_pred             -------CCcchhHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCCh
Q 038432          443 -------YTAGDLLCTAEKRNDMSVMEELVKYG-LNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSS  514 (602)
Q Consensus       443 -------~~g~t~L~~A~~~~~~~~~~~Ll~~g-a~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~  514 (602)
                             ..|.||||+|+..|+.+++++|+++| +++|.+|..|+||||+|+..|+.++|++|+++|+|++.+|..|.||
T Consensus       270 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~  349 (373)
T 2fo1_E          270 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTA  349 (373)
T ss_dssp             GGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCH
T ss_pred             cccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCH
Confidence                   47899999999999999999999876 9999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHhhhceeeeccC
Q 038432          515 TNLNDMLQKREIGHRITVHDD  535 (602)
Q Consensus       515 l~~a~~~~~~~~~~~l~~~~~  535 (602)
                      ||+|+..++.++++.|...++
T Consensus       350 l~~A~~~g~~~iv~~Ll~~~a  370 (373)
T 2fo1_E          350 RQLAQANNHHNIVDIFDRCRP  370 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHTTC-
T ss_pred             HHHHHHcCCHHHHHHHHhcCc
Confidence            999999999999999988763

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.2e-35  Score=282.48  Aligned_cols=200  Identities=21%  Similarity=0.168  Sum_probs=175.3

Q ss_pred             HhhhhhhcccccccccccCCC---CCCCCCchhhhHhhhcCcHHHHHHHHhcC--CCCCC-CCCCCchHHHHHHhcCChH
Q 038432          305 QQHKKLKDLNIGDLIAESGEE---DGDPNMSVNLLTVASTGNAAFLDELLKAR--LDPDI-GDSKGRTPLHIAASKGHEE  378 (602)
Q Consensus       305 ~~~~~~~~~~~~~~l~~~~~~---~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g--~~~n~-~d~~g~t~Lh~A~~~g~~~  378 (602)
                      ..+...++.+..+.+++.+.+   ..+..|.||||+|+..|+.+++++|++.|  .+++. .|..|.||||+|+..|+.+
T Consensus         7 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~   86 (228)
T 2dzn_A            7 HQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLE   86 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHH
T ss_pred             HHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHH
Confidence            334444555555555554433   26788999999999999999999999999  55555 7889999999999999999


Q ss_pred             HHHHHHhcc--cCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHh
Q 038432          379 CVLVLLKHA--SNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEK  454 (602)
Q Consensus       379 ~v~~Ll~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~  454 (602)
                      ++++|+++|  ++++..+                 ..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+.
T Consensus        87 ~~~~Ll~~g~~~~~~~~~-----------------~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~  149 (228)
T 2dzn_A           87 VVKSLYDRPLKPDLNKIT-----------------NQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAAS  149 (228)
T ss_dssp             HHHHHHSSSSCCCTTCCC-----------------TTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH
T ss_pred             HHHHHHhCCCCcccccCC-----------------cCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            999999998  8888887                 8899999999999999999999999999887  789999999999


Q ss_pred             cCCHHHHHHHHHcC-CCCCCCCCCCcCHHHHHHHcCcHHHHHHHH-HCCCCcccCCCCCCChhhHHHHH
Q 038432          455 RNDMSVMEELVKYG-LNVDSKDRHGRTAIEIAMAENNVEMVNFLV-MNGSDVVGANKCEFSSTNLNDML  521 (602)
Q Consensus       455 ~~~~~~~~~Ll~~g-a~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll-~~ga~~~~~d~~g~t~l~~a~~~  521 (602)
                      .|+.+++++|+++| +++|.+|..|+||||+|+..|+.+++++|+ ++|+|++.+|..|.||+|+|...
T Consensus       150 ~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          150 VGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE  218 (228)
T ss_dssp             TTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST
T ss_pred             cCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH
Confidence            99999999999999 999999999999999999999999999999 88999999999999999999543

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=9.6e-37  Score=291.74  Aligned_cols=191  Identities=22%  Similarity=0.262  Sum_probs=175.5

Q ss_pred             CCCCCchhhhHhhhcCcHHHHHHHHhcCC----CCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhcc
Q 038432          327 GDPNMSVNLLTVASTGNAAFLDELLKARL----DPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNL  402 (602)
Q Consensus       327 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~----~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~  402 (602)
                      .+.+|.||||+|+..|+.++++.|++.+.    ++|.+|..|.||||+|+..|+.+++++|+++|++++..+        
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--------   75 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRD--------   75 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCC--------
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC--------
Confidence            56789999999999999999999998754    799999999999999999999999999999999999998        


Q ss_pred             chhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCC------CC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCC
Q 038432          403 SYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAIS------DP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSK  474 (602)
Q Consensus       403 ~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~------~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~  474 (602)
                               ..|.||||+|+..|+.+++++|+++|++.      +.  ..|.||||+|+..|+.+++++|+++|++++.+
T Consensus        76 ---------~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  146 (236)
T 1ikn_D           76 ---------FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ  146 (236)
T ss_dssp             ---------TTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCC
T ss_pred             ---------CCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC
Confidence                     89999999999999999999999999753      22  67999999999999999999999999999999


Q ss_pred             CC-CCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432          475 DR-HGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD  534 (602)
Q Consensus       475 d~-~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~  534 (602)
                      |. .|.||||+|+..|+.+++++|+++|+|++.+|..|.||+|+|+..++.++++.|+.++
T Consensus       147 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~g  207 (236)
T 1ikn_D          147 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT  207 (236)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTS
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcc
Confidence            98 9999999999999999999999999999999999999999999999999999988877

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.9e-35  Score=302.11  Aligned_cols=231  Identities=13%  Similarity=0.049  Sum_probs=182.2

Q ss_pred             HHHHhhhhhhcccccccccccCCCC--CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHH
Q 038432          302 NFLQQHKKLKDLNIGDLIAESGEED--GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEEC  379 (602)
Q Consensus       302 ~ll~~~~~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~  379 (602)
                      ..+..+...++.+..+.|++.+.+.  .+..|.||||+|+..|+.+++++|++.|++++.  .+|.||||+|+..|+.++
T Consensus        22 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~~g~~~~   99 (364)
T 3ljn_A           22 EKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVMANKTDL   99 (364)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHHcCCHHH
Confidence            3455566666667777776665433  566777777777777777777777777775443  467777777777777777


Q ss_pred             HHHHHhc----ccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcC--ChhHHHHHHhcCCCCCC--CCcchhHHH
Q 038432          380 VLVLLKH----ASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSK--HHSIFRILYHCTAISDP--YTAGDLLCT  451 (602)
Q Consensus       380 v~~Ll~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~--~~~~~~~Ll~~g~~~~~--~~g~t~L~~  451 (602)
                      +++|+++    |++++.............-..+..|..|.||||+|+..|  +.+++++|+++|++++.  ..|.||||+
T Consensus       100 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~  179 (364)
T 3ljn_A          100 VVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMR  179 (364)
T ss_dssp             HHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            7777777    555544000000000000000013478999999999999  99999999999999987  789999999


Q ss_pred             HHhcCCHHHHHHHHHcCCC-----CCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhh
Q 038432          452 AEKRNDMSVMEELVKYGLN-----VDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREI  526 (602)
Q Consensus       452 A~~~~~~~~~~~Ll~~ga~-----~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~  526 (602)
                      |+..|+.+++++|+++|++     +|.+|..|+||||+|+..|+.++|++|+++|+|++.+|..|.||||+|+..++.++
T Consensus       180 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~  259 (364)
T 3ljn_A          180 AMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLL  259 (364)
T ss_dssp             HHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHH
T ss_pred             HHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHH
Confidence            9999999999999999999     99999999999999999999999999999999999999999999999999999999


Q ss_pred             hceeeecc
Q 038432          527 GHRITVHD  534 (602)
Q Consensus       527 ~~~l~~~~  534 (602)
                      ++.|+.++
T Consensus       260 v~~Ll~~~  267 (364)
T 3ljn_A          260 TKELLQKT  267 (364)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHcC
Confidence            99998875

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=5.9e-36  Score=290.03  Aligned_cols=198  Identities=21%  Similarity=0.170  Sum_probs=175.9

Q ss_pred             CchhhhHhhhcCcHH----HHHHHHhcCCCCCC----CCCCCchHHHHHHhc---CChHHHHHHHhcccCCCchhhHHHH
Q 038432          331 MSVNLLTVASTGNAA----FLDELLKARLDPDI----GDSKGRTPLHIAASK---GHEECVLVLLKHASNVHLRDYIIFM  399 (602)
Q Consensus       331 g~t~L~~A~~~g~~~----~~~~Ll~~g~~~n~----~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~~~  399 (602)
                      |+||||.|+..|+.+    ++++|++.|+++|.    .|..|+||||+|+..   |+.+++++|+++|++++..+...  
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~--   79 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV--   79 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG--
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc--
Confidence            789999999999997    66777789999998    899999999999999   99999999999999887432000  


Q ss_pred             hccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCCC--C-------------cchhHHHHHhcCCHHHHHHH
Q 038432          400 YNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPY--T-------------AGDLLCTAEKRNDMSVMEEL  464 (602)
Q Consensus       400 ~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~--~-------------g~t~L~~A~~~~~~~~~~~L  464 (602)
                       ..   .....|..|.||||+|+..|+.+++++|+++|++++..  .             |.||||+|+..|+.+++++|
T Consensus        80 -~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~L  155 (256)
T 2etb_A           80 -NA---QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYL  155 (256)
T ss_dssp             -GC---CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred             -cc---ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence             00   00011367999999999999999999999999999882  2             99999999999999999999


Q ss_pred             HH---cCCCCCCCCCCCcCHHHHHHH--cCcHH-------HHHHHHHCCCCc-------ccCCCCCCChhhHHHHHHHHh
Q 038432          465 VK---YGLNVDSKDRHGRTAIEIAMA--ENNVE-------MVNFLVMNGSDV-------VGANKCEFSSTNLNDMLQKRE  525 (602)
Q Consensus       465 l~---~ga~~n~~d~~g~TpLh~A~~--~~~~~-------iv~~Ll~~ga~~-------~~~d~~g~t~l~~a~~~~~~~  525 (602)
                      ++   +|+++|.+|.+|+||||+|+.  .++.+       ++++|+++|+|+       +.+|..|.||||+|+..++.+
T Consensus       156 l~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~  235 (256)
T 2etb_A          156 LENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIE  235 (256)
T ss_dssp             HHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred             HhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHH
Confidence            99   999999999999999999999  88888       999999999999       999999999999999999999


Q ss_pred             hhceeeecc
Q 038432          526 IGHRITVHD  534 (602)
Q Consensus       526 ~~~~l~~~~  534 (602)
                      +++.|+.++
T Consensus       236 ~v~~Ll~~g  244 (256)
T 2etb_A          236 IFRHILQRE  244 (256)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhCC
Confidence            999988776

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=3.3e-35  Score=279.41  Aligned_cols=190  Identities=21%  Similarity=0.186  Sum_probs=173.3

Q ss_pred             CchhhhHhhhcCcHHHHHHHHhcCCCCCC-CCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHH
Q 038432          331 MSVNLLTVASTGNAAFLDELLKARLDPDI-GDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL  409 (602)
Q Consensus       331 g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~-~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~  409 (602)
                      |.||||.|+..|+.++++.|++.|.+++. .|..|.||||+|+..|+.+++++|+++|++++...              .
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~--------------~   67 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD--------------Y   67 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGG--------------C
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccc--------------c
Confidence            68999999999999999999999887654 89999999999999999999999999995444321              0


Q ss_pred             hhccCCcHHHHHHHcCChhHHHHHHhcC--CCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHH
Q 038432          410 LDMNGNTALWEAISSKHHSIFRILYHCT--AISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIA  485 (602)
Q Consensus       410 ~~~~g~tpLh~A~~~~~~~~~~~Ll~~g--~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A  485 (602)
                      .+..|.||||+|+..|+.+++++|+++|  ++++.  ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus        68 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A  147 (228)
T 2dzn_A           68 PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA  147 (228)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHH
Confidence            1388999999999999999999999999  77665  7899999999999999999999999999999999999999999


Q ss_pred             HHcCcHHHHHHHHHCC-CCcccCCCCCCChhhHHHHHHHHhhhceee-ecc
Q 038432          486 MAENNVEMVNFLVMNG-SDVVGANKCEFSSTNLNDMLQKREIGHRIT-VHD  534 (602)
Q Consensus       486 ~~~~~~~iv~~Ll~~g-a~~~~~d~~g~t~l~~a~~~~~~~~~~~l~-~~~  534 (602)
                      +..|+.+++++|+++| ++++.+|..|.||||+|+..++.++++.|+ ..+
T Consensus       148 ~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~g  198 (228)
T 2dzn_A          148 ASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG  198 (228)
T ss_dssp             HHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             HHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC
Confidence            9999999999999999 999999999999999999999999888887 544

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1e-35  Score=289.44  Aligned_cols=191  Identities=16%  Similarity=0.164  Sum_probs=153.7

Q ss_pred             CCCCCchhhhHhhhcCcHHHHHHHHhcCCC--------CCCCCCCCchHHHHHHhcCCh-HHHHHHHhcccCCCchhhHH
Q 038432          327 GDPNMSVNLLTVASTGNAAFLDELLKARLD--------PDIGDSKGRTPLHIAASKGHE-ECVLVLLKHASNVHLRDYII  397 (602)
Q Consensus       327 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~--------~n~~d~~g~t~Lh~A~~~g~~-~~v~~Ll~~g~~~~~~~~~~  397 (602)
                      ++..+.+||+.||..|+.+++++|++.|++        ++..|..|.||||.|+..++. .++++|++.|+++|..|   
T Consensus         7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d---   83 (269)
T 4b93_B            7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTS---   83 (269)
T ss_dssp             CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCC---
T ss_pred             cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcC---
Confidence            456678999999999999999999998865        456788899999999988775 58899999999999998   


Q ss_pred             HHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCC
Q 038432          398 FMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKD  475 (602)
Q Consensus       398 ~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d  475 (602)
                                    .+|.||||+|+..|+.+++++|++.|++++.  ..|.||+|.|+..++.+++++|+++|+++|.+|
T Consensus        84 --------------~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d  149 (269)
T 4b93_B           84 --------------QDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKD  149 (269)
T ss_dssp             --------------TTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC
T ss_pred             --------------CCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCC
Confidence                          9999999999999999999999999999987  789999999999999999999999999999999


Q ss_pred             CCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432          476 RHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD  534 (602)
Q Consensus       476 ~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~  534 (602)
                      ..|+||||+||..|+.++|++|+++|+|++.+|..|.||||+|+..++.++++.|+..+
T Consensus       150 ~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~G  208 (269)
T 4b93_B          150 LSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHG  208 (269)
T ss_dssp             TTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCC
Confidence            99999999999999999999999999999999999999999999999999998888776

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-34  Score=304.11  Aligned_cols=231  Identities=23%  Similarity=0.287  Sum_probs=126.5

Q ss_pred             HHhhhhhhcccccccccccCCCC--CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHH
Q 038432          304 LQQHKKLKDLNIGDLIAESGEED--GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVL  381 (602)
Q Consensus       304 l~~~~~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~  381 (602)
                      +..+...+..++.+.|++.+.+.  .+..|.||||.|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.++|+
T Consensus        18 L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~   97 (437)
T 1n11_A           18 LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVK   97 (437)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence            33344444455555554444322  3444555555555555555555555555555555555555555555555555555


Q ss_pred             HHHhcccCCCchh------hHHH---------------------------------HhccchhHHHHh----------hc
Q 038432          382 VLLKHASNVHLRD------YIIF---------------------------------MYNLSYDIIILL----------DM  412 (602)
Q Consensus       382 ~Ll~~g~~~~~~~------~~~~---------------------------------~~~~~~~~~~~~----------~~  412 (602)
                      +|+++|++++..+      ...+                                 ...++.+++..+          +.
T Consensus        98 ~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~  177 (437)
T 1n11_A           98 LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK  177 (437)
T ss_dssp             HHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCS
T ss_pred             HHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCC
Confidence            5555555555443      1222                                 222333333221          33


Q ss_pred             cCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCc
Q 038432          413 NGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENN  490 (602)
Q Consensus       413 ~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~  490 (602)
                      .|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..|+.+++++|+++|+++|..|..|.||||+|+..|+
T Consensus       178 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~  257 (437)
T 1n11_A          178 NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGH  257 (437)
T ss_dssp             SCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCC
Confidence            455555555555555555555555555544  345566666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432          491 VEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD  534 (602)
Q Consensus       491 ~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~  534 (602)
                      .+++++|+++|++++..|..|.||||+|+..++.++++.|..++
T Consensus       258 ~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  301 (437)
T 1n11_A          258 AEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG  301 (437)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence            66666666666666666666666666666666666666555543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-34  Score=302.59  Aligned_cols=211  Identities=20%  Similarity=0.251  Sum_probs=174.1

Q ss_pred             hhhhhhcccccccccccCCCC--CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHH
Q 038432          306 QHKKLKDLNIGDLIAESGEED--GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVL  383 (602)
Q Consensus       306 ~~~~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~L  383 (602)
                      .+...++.++.+.|++.+.+.  .+.+|.||||+|+..|+.++++.|++.|+++|..+..|.||||+|+..|+.+++++|
T Consensus       185 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  264 (437)
T 1n11_A          185 VAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALL  264 (437)
T ss_dssp             HHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence            344445555666666655433  456778888888888888888888888888888888888888888888888888888


Q ss_pred             HhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHH
Q 038432          384 LKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVM  461 (602)
Q Consensus       384 l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~  461 (602)
                      +++|++++..+                 ..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..|+.+++
T Consensus       265 l~~~~~~~~~~-----------------~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v  327 (437)
T 1n11_A          265 LSKQANGNLGN-----------------KSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV  327 (437)
T ss_dssp             HTTTCCTTCCC-----------------TTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHH
T ss_pred             HhcCCCCCCCC-----------------CCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHH
Confidence            88888888877                 8888999999988999999999988888876  6788899999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeec
Q 038432          462 EELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVH  533 (602)
Q Consensus       462 ~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~  533 (602)
                      ++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|+|++.+|.+|.||+++|+..++.++++.|...
T Consensus       328 ~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~  399 (437)
T 1n11_A          328 KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVV  399 (437)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhc
Confidence            999999999988888899999999999999999999999999988888999999998888887776666433

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1e-34  Score=288.15  Aligned_cols=176  Identities=23%  Similarity=0.244  Sum_probs=140.9

Q ss_pred             CCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHH
Q 038432          328 DPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDII  407 (602)
Q Consensus       328 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~  407 (602)
                      +.+|.||||.||..|+.++++.|++.|+++|..|..|.||||+||..|+.+++++|+++|++++..|             
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~-------------  103 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD-------------  103 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC-------------
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC-------------
Confidence            3456677777777777777777777777777777777777777777777777777777777777766             


Q ss_pred             HHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC---------------------------------------------
Q 038432          408 ILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP---------------------------------------------  442 (602)
Q Consensus       408 ~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~---------------------------------------------  442 (602)
                          ..|.||||+|+..|+.+++++|+++|++++.                                             
T Consensus       104 ----~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~  179 (299)
T 1s70_B          104 ----NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLR  179 (299)
T ss_dssp             ----TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             ----CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHH
Confidence                6777777777777777777777777766543                                             


Q ss_pred             -----------------CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcc
Q 038432          443 -----------------YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVV  505 (602)
Q Consensus       443 -----------------~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~  505 (602)
                                       ..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|+|++
T Consensus       180 ~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~  259 (299)
T 1s70_B          180 DARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME  259 (299)
T ss_dssp             HHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCC
Confidence                             247788999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCChhhHHHH
Q 038432          506 GANKCEFSSTNLNDM  520 (602)
Q Consensus       506 ~~d~~g~t~l~~a~~  520 (602)
                      .+|..|.||+|+|+.
T Consensus       260 ~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          260 AVNKVGQTAFDVADE  274 (299)
T ss_dssp             CCCTTSCCTTTSCCS
T ss_pred             CcCCCCCCHHHHHHH
Confidence            999999999999853

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.4e-34  Score=274.07  Aligned_cols=190  Identities=24%  Similarity=0.209  Sum_probs=180.1

Q ss_pred             CCCchhhhHhhhcCcHHHHHHHHhcCC-CCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHH
Q 038432          329 PNMSVNLLTVASTGNAAFLDELLKARL-DPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDII  407 (602)
Q Consensus       329 ~~g~t~L~~A~~~g~~~~~~~Ll~~g~-~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~  407 (602)
                      ..+.+|||.|+..|+.+.++.|++.+. .++..|..|.||||+|+..|+.+++++|+++|++++..|             
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-------------   70 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD-------------   70 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC-------------
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcC-------------
Confidence            346799999999999999999998754 478889999999999999999999999999999999998             


Q ss_pred             HHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHH
Q 038432          408 ILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIA  485 (602)
Q Consensus       408 ~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A  485 (602)
                          ..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus        71 ----~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A  146 (231)
T 3aji_A           71 ----DAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRA  146 (231)
T ss_dssp             ----TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             ----CCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence                8999999999999999999999999999987  7799999999999999999999999999999999999999999


Q ss_pred             HHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeeccC
Q 038432          486 MAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDD  535 (602)
Q Consensus       486 ~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~  535 (602)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..++.++++.|+..+.
T Consensus       147 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  196 (231)
T 3aji_A          147 AAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA  196 (231)
T ss_dssp             HHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCC
Confidence            99999999999999999999999999999999999999999888887763

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2.2e-34  Score=290.88  Aligned_cols=230  Identities=20%  Similarity=0.236  Sum_probs=196.9

Q ss_pred             HHHHhhhhhhcccccccccccCCCC--CC-CCCchhhhHhhhcCcHHHHHHHHhcCCCCC--------------------
Q 038432          302 NFLQQHKKLKDLNIGDLIAESGEED--GD-PNMSVNLLTVASTGNAAFLDELLKARLDPD--------------------  358 (602)
Q Consensus       302 ~ll~~~~~~~~~~~~~~l~~~~~~~--~~-~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n--------------------  358 (602)
                      +.+..+.+.++.++++.|++.++++  ++ ..|+||||+||..|+.+++++|+++|++++                    
T Consensus        27 t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~  106 (337)
T 4g8k_A           27 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVK  106 (337)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccch
Confidence            4567788889999999999998766  33 358999999999999999999999887654                    


Q ss_pred             -------------CCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcC
Q 038432          359 -------------IGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSK  425 (602)
Q Consensus       359 -------------~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~  425 (602)
                                   ..|..|.||||+|+..|+.+++++|+++|++++..+       .........+..|.||||+|+..|
T Consensus       107 ~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~-------~~~~~~~~~~~~g~T~L~~A~~~g  179 (337)
T 4g8k_A          107 LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR-------KTKEDQERLRKGGATALMDAAEKG  179 (337)
T ss_dssp             HHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC-------CCC-----CTTCSCCHHHHHHHHT
T ss_pred             hhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhh-------ccccccccccCCCCcHHHHHHHCC
Confidence                         456778899999999999999999999999988654       111222334578999999999999


Q ss_pred             ChhHHHHHHh-cCCCCCC--CCcchhHHHHHhcCC----HHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHH
Q 038432          426 HHSIFRILYH-CTAISDP--YTAGDLLCTAEKRND----MSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLV  498 (602)
Q Consensus       426 ~~~~~~~Ll~-~g~~~~~--~~g~t~L~~A~~~~~----~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll  498 (602)
                      +.+++++|++ .|++++.  ..|.||+|.++..+.    ..++++|+++|+++|.+|..|+||||+|+..|+.+++++|+
T Consensus       180 ~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll  259 (337)
T 4g8k_A          180 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL  259 (337)
T ss_dssp             CHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHH
Confidence            9999999996 5999987  788999998776544    46889999999999999999999999999999999999999


Q ss_pred             HC-CCCcccCCCCCCChhhHHHHHHHHhhhceeeeccCCCc
Q 038432          499 MN-GSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNST  538 (602)
Q Consensus       499 ~~-ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~  538 (602)
                      +. |++++.+|.+|+||||+|+..++.++++.|+.++++..
T Consensus       260 ~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n  300 (337)
T 4g8k_A          260 EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD  300 (337)
T ss_dssp             TSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST
T ss_pred             HhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            85 89999999999999999999999999999998876544

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2.7e-35  Score=301.40  Aligned_cols=237  Identities=18%  Similarity=0.196  Sum_probs=204.6

Q ss_pred             HHhhhhhhcccccccccccCCCCCC-CCCchhhhHhhhcCcHHHHHHHH--------hcCCCCCCCCCCCchHHHHHHhc
Q 038432          304 LQQHKKLKDLNIGDLIAESGEEDGD-PNMSVNLLTVASTGNAAFLDELL--------KARLDPDIGDSKGRTPLHIAASK  374 (602)
Q Consensus       304 l~~~~~~~~~~~~~~l~~~~~~~~~-~~g~t~L~~A~~~g~~~~~~~Ll--------~~g~~~n~~d~~g~t~Lh~A~~~  374 (602)
                      +..+.. +...+.+.+.....+..+ ..|.||||+||..|+.++++.|+        +.|+++|.+|..|.||||+|+..
T Consensus        98 L~~Aa~-~~~~~~~~L~~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~  176 (373)
T 2fo1_E           98 LHTEAA-GSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLA  176 (373)
T ss_dssp             HHHHHH-SSSCCCSCCSTTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHHhc-CCchHHHHhccccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHc
Confidence            344444 334666777665556666 68999999999999998877776        78999999999999999999999


Q ss_pred             CChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcC---CCCCC--CCcchhH
Q 038432          375 GHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCT---AISDP--YTAGDLL  449 (602)
Q Consensus       375 g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g---~~~~~--~~g~t~L  449 (602)
                      |+.++|++|+++|++++..+                 ..|.||||+|+..|+.+++++|+++|   ++++.  ..|.|||
T Consensus       177 g~~~iv~~Ll~~ga~~~~~~-----------------~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L  239 (373)
T 2fo1_E          177 RRRRLVAYLMKAGADPTIYN-----------------KSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTAL  239 (373)
T ss_dssp             TCHHHHHHHHHTTCCSCCCC-----------------TTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHH
T ss_pred             ChHHHHHHHHHCCCCCcccC-----------------CCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHH
Confidence            99999999999999999998                 89999999999999999999999988   67776  7899999


Q ss_pred             HHHHhcC---CHHHHHHHHHcCCCCCC--------CCCCCcCHHHHHHHcCcHHHHHHHHHCC-CCcccCCCCCCChhhH
Q 038432          450 CTAEKRN---DMSVMEELVKYGLNVDS--------KDRHGRTAIEIAMAENNVEMVNFLVMNG-SDVVGANKCEFSSTNL  517 (602)
Q Consensus       450 ~~A~~~~---~~~~~~~Ll~~ga~~n~--------~d~~g~TpLh~A~~~~~~~iv~~Ll~~g-a~~~~~d~~g~t~l~~  517 (602)
                      |+|+..+   +.+++++|+++|++++.        .|..|.||||+|+..|+.++|++|+++| ++++.+|..|.||||+
T Consensus       240 ~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~  319 (373)
T 2fo1_E          240 MIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIML  319 (373)
T ss_dssp             HHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHH
T ss_pred             HHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHH
Confidence            9999998   89999999999999986        6779999999999999999999999875 9999999999999999


Q ss_pred             HHHHHHHhhhceeeeccCCCchhHHHhhhhhhhhhhhhcCCCCCCcceeEEEecCCCc
Q 038432          518 NDMLQKREIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEGKSKGGNCQRVSIYRGHPL  575 (602)
Q Consensus       518 a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  575 (602)
                      |+..++.++++.|+.++.+             .+    .....|.++.++++..||..
T Consensus       320 A~~~g~~~iv~~Ll~~gad-------------~~----~~d~~g~t~l~~A~~~g~~~  360 (373)
T 2fo1_E          320 AAQEGRIEVVMYLIQQGAS-------------VE----AVDATDHTARQLAQANNHHN  360 (373)
T ss_dssp             HHHHTCHHHHHHHHHTTCC-------------SS----CCCSSSCCHHHHHHHTTCHH
T ss_pred             HHHcCCHHHHHHHHHcCCC-------------cc----CCCCCCCCHHHHHHHcCCHH
Confidence            9999999999988877632             21    22345667777777777653

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=2.1e-34  Score=275.89  Aligned_cols=214  Identities=20%  Similarity=0.170  Sum_probs=193.2

Q ss_pred             HHhhhhhhcccccccccccCCCC--CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCC-CCCchHHHHHHhcCChHHH
Q 038432          304 LQQHKKLKDLNIGDLIAESGEED--GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGD-SKGRTPLHIAASKGHEECV  380 (602)
Q Consensus       304 l~~~~~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d-~~g~t~Lh~A~~~g~~~~v  380 (602)
                      +..+...++.+..+.+++.+.+.  .+..|.||||.|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++
T Consensus        13 l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v   92 (240)
T 3eu9_A           13 IVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMV   92 (240)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHH
T ss_pred             HHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHH
Confidence            33455666677777777766544  67789999999999999999999999999988665 4599999999999999999


Q ss_pred             HHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCC-
Q 038432          381 LVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRND-  457 (602)
Q Consensus       381 ~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~-  457 (602)
                      ++|+++|++++..+                 ..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..++ 
T Consensus        93 ~~Ll~~g~~~~~~~-----------------~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~  155 (240)
T 3eu9_A           93 VQLMKYGADPSLID-----------------GEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHS  155 (240)
T ss_dssp             HHHHHTTCCTTCCC-----------------TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCS
T ss_pred             HHHHHcCCCCcccC-----------------CCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCh
Confidence            99999999999887                 8999999999999999999999999999887  789999999997766 


Q ss_pred             HHHHHHHHHcCCCCCCCCC-CCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432          458 MSVMEELVKYGLNVDSKDR-HGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD  534 (602)
Q Consensus       458 ~~~~~~Ll~~ga~~n~~d~-~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~  534 (602)
                      .+++++|++.|++++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..++.++++.|...+
T Consensus       156 ~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~  233 (240)
T 3eu9_A          156 VDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR  233 (240)
T ss_dssp             STTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence            8999999999999999997 9999999999999999999999999999999999999999999999999999988776

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=3.8e-34  Score=256.99  Aligned_cols=154  Identities=23%  Similarity=0.311  Sum_probs=147.6

Q ss_pred             hHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--C
Q 038432          366 TPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--Y  443 (602)
Q Consensus       366 t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~  443 (602)
                      ++|+.||..|+.++|++|+++|+|+|.+|                 ..|.||||+|+..++.+++++|+++|++++.  .
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d-----------------~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~   68 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASD-----------------SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS   68 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCC-----------------TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcC-----------------CCCCCHHHHHHHcCCHHHHHHHHhcccchhhhcc
Confidence            57999999999999999999999999998                 9999999999999999999999999999988  7


Q ss_pred             CcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHH
Q 038432          444 TAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQK  523 (602)
Q Consensus       444 ~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~  523 (602)
                      .|+||||+|+..|+.+++++|+++|+|+|.+|.+|+||||+|+..|+.++|++|+++|+|++.+|.+|+||||+|+..++
T Consensus        69 ~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~  148 (169)
T 4gpm_A           69 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGN  148 (169)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhceeeeccCC
Q 038432          524 REIGHRITVHDDN  536 (602)
Q Consensus       524 ~~~~~~l~~~~~~  536 (602)
                      .++++.|+.++++
T Consensus       149 ~~iv~~Ll~~GA~  161 (169)
T 4gpm_A          149 EEVVKLLEKQGGW  161 (169)
T ss_dssp             HHHHHHHHTC---
T ss_pred             HHHHHHHHHCCCC
Confidence            9999999988743

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=4.1e-35  Score=288.40  Aligned_cols=209  Identities=18%  Similarity=0.176  Sum_probs=191.3

Q ss_pred             HHHHhhhhhhcccccccccccCCCCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHH
Q 038432          302 NFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVL  381 (602)
Q Consensus       302 ~ll~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~  381 (602)
                      +.+..+...+..+..+.|++.+++....+|.||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.++++
T Consensus        33 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~  112 (285)
T 3kea_A           33 SASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVK  112 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence            35666777888888899999888776668999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcccCCCchhhHHHHhccchhHHHHhhccC-CcHHHHHHHcCChhHHHHHHhcCCCCCCC-CcchhHHHHHhcCCHH
Q 038432          382 VLLKHASNVHLRDYIIFMYNLSYDIIILLDMNG-NTALWEAISSKHHSIFRILYHCTAISDPY-TAGDLLCTAEKRNDMS  459 (602)
Q Consensus       382 ~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g-~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~-~g~t~L~~A~~~~~~~  459 (602)
                      +|+++|++++..+                 ..| .||||+|+..|+.+++++|+++|++.... .|.||||+|+..|+.+
T Consensus       113 ~Ll~~ga~~~~~~-----------------~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~  175 (285)
T 3kea_A          113 LFVKKNWRLMFYG-----------------KTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVD  175 (285)
T ss_dssp             HHHHHCGGGGGCS-----------------SSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHH
T ss_pred             HHHhcCCCCCccC-----------------CCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHH
Confidence            9999999999988                 888 79999999999999999999999988664 9999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCcCH-HHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432          460 VMEELVKYGLNVDSKDRHGRTA-IEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD  534 (602)
Q Consensus       460 ~~~~Ll~~ga~~n~~d~~g~Tp-Lh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~  534 (602)
                      ++++|+++|+++|.+|..|+|| ||+|+..|+.+++++|+++|+|++.+|.       .|+..++.++++.|+.++
T Consensus       176 ~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g  244 (285)
T 3kea_A          176 MMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKH  244 (285)
T ss_dssp             HHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcC
Confidence            9999999999999999999998 9999999999999999999999999984       445566777777776654

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=7.5e-35  Score=285.09  Aligned_cols=205  Identities=18%  Similarity=0.166  Sum_probs=175.4

Q ss_pred             CCCCCCCchhhhHhhhcCcHHHHHHHHh----cCCCCC----CCCCCCchHHHHHHhc---CChHHHHHHHhcccCCCch
Q 038432          325 EDGDPNMSVNLLTVASTGNAAFLDELLK----ARLDPD----IGDSKGRTPLHIAASK---GHEECVLVLLKHASNVHLR  393 (602)
Q Consensus       325 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~----~g~~~n----~~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~~~~  393 (602)
                      +..+..|.||||.|+..|+.++++.|++    .+++++    ..|..|+||||+|+..   |+.++|++|+++|++++..
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~   86 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL   86 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence            3467889999999999999999888886    566666    4588999999999987   9999999999999875432


Q ss_pred             hhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCCC----------------CcchhHHHHHhcCC
Q 038432          394 DYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPY----------------TAGDLLCTAEKRND  457 (602)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~----------------~g~t~L~~A~~~~~  457 (602)
                      ...   ....   ....|..|.||||+|+..|+.+++++|+++|++++..                .|.||||+|+..|+
T Consensus        87 ~~~---i~~~---~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~  160 (273)
T 2pnn_A           87 KQF---VNAS---YTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ  160 (273)
T ss_dssp             HHH---HTCC---CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTC
T ss_pred             hHH---hhcc---cccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCC
Confidence            100   0000   0002368999999999999999999999999999882                59999999999999


Q ss_pred             HHHHHHHHH---cCCCCCCCCCCCcCHHHHHHHcCc---------HHHHHHHHHCCCCcc-------cCCCCCCChhhHH
Q 038432          458 MSVMEELVK---YGLNVDSKDRHGRTAIEIAMAENN---------VEMVNFLVMNGSDVV-------GANKCEFSSTNLN  518 (602)
Q Consensus       458 ~~~~~~Ll~---~ga~~n~~d~~g~TpLh~A~~~~~---------~~iv~~Ll~~ga~~~-------~~d~~g~t~l~~a  518 (602)
                      .+++++|++   +|+++|.+|.+|+||||+|+..|+         .+++++|+++|++++       .+|..|.||||+|
T Consensus       161 ~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A  240 (273)
T 2pnn_A          161 LAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA  240 (273)
T ss_dssp             HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHH
T ss_pred             HHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHH
Confidence            999999999   999999999999999999999998         899999999999997       5999999999999


Q ss_pred             HHHHHHhhhceeeeccC
Q 038432          519 DMLQKREIGHRITVHDD  535 (602)
Q Consensus       519 ~~~~~~~~~~~l~~~~~  535 (602)
                      +..++.++++.|+.+++
T Consensus       241 ~~~g~~~iv~~Ll~~ga  257 (273)
T 2pnn_A          241 ASSGKIGVLAYILQREI  257 (273)
T ss_dssp             HHTTCHHHHHHHHHHHT
T ss_pred             HHhChHHHHHHHHHCCC
Confidence            99999999999988774

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.8e-33  Score=285.64  Aligned_cols=217  Identities=24%  Similarity=0.227  Sum_probs=189.6

Q ss_pred             HHHhhhhhhcccccccccccCCCC--CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHH
Q 038432          303 FLQQHKKLKDLNIGDLIAESGEED--GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECV  380 (602)
Q Consensus       303 ll~~~~~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v  380 (602)
                      .+..+...+..++.+.|++.+.+.  .+..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++
T Consensus        61 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v  140 (351)
T 3utm_A           61 PLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVC  140 (351)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence            455566677788888888887655  778899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccCCCchhh---------------------------HHHHhccchhHHH----------HhhccCCcHHHHHHH
Q 038432          381 LVLLKHASNVHLRDY---------------------------IIFMYNLSYDIII----------LLDMNGNTALWEAIS  423 (602)
Q Consensus       381 ~~Ll~~g~~~~~~~~---------------------------~~~~~~~~~~~~~----------~~~~~g~tpLh~A~~  423 (602)
                      ++|+++|++++..+.                           .......+.+.+.          ..+..|.||||+|+.
T Consensus       141 ~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~  220 (351)
T 3utm_A          141 SLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVA  220 (351)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHH
T ss_pred             HHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHH
Confidence            999999999987651                           0111111111111          125678999999999


Q ss_pred             c---CChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHH
Q 038432          424 S---KHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLV  498 (602)
Q Consensus       424 ~---~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll  498 (602)
                      .   +..+++++|+++|++++.  ..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+
T Consensus       221 ~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll  300 (351)
T 3utm_A          221 SLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL  300 (351)
T ss_dssp             CCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            9   558999999999999987  78999999999999999999999999999999999999999999999999999999


Q ss_pred             HCCCCcccCCCCCCChhhHHH
Q 038432          499 MNGSDVVGANKCEFSSTNLND  519 (602)
Q Consensus       499 ~~ga~~~~~d~~g~t~l~~a~  519 (602)
                      ++|+|++.+|..|.||+++|.
T Consensus       301 ~~gad~~~~~~~g~tal~~a~  321 (351)
T 3utm_A          301 SYGSDPSIISLQGFTAAQMGN  321 (351)
T ss_dssp             HTTCCTTCCCTTSCCHHHHSC
T ss_pred             HcCCCCCCcCCCCCChhhhhh
Confidence            999999999999999999983

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.1e-34  Score=296.29  Aligned_cols=192  Identities=17%  Similarity=0.196  Sum_probs=179.5

Q ss_pred             CCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchh
Q 038432          326 DGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYD  405 (602)
Q Consensus       326 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~  405 (602)
                      ..+.+|.||||+||..|+.+++++|++.|+++|.+|..|.||||+||..|+.++|++|+++|++++.             
T Consensus        15 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-------------   81 (364)
T 3ljn_A           15 KSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL-------------   81 (364)
T ss_dssp             -CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC-------------
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc-------------
Confidence            3577899999999999999999999999999999999999999999999999999999999997764             


Q ss_pred             HHHHhhccCCcHHHHHHHcCChhHHHHHHhc----CCCCCC-------------------CCcchhHHHHHhcC--CHHH
Q 038432          406 IIILLDMNGNTALWEAISSKHHSIFRILYHC----TAISDP-------------------YTAGDLLCTAEKRN--DMSV  460 (602)
Q Consensus       406 ~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~----g~~~~~-------------------~~g~t~L~~A~~~~--~~~~  460 (602)
                            ..|.||||+|+..|+.+++++|+++    |++++.                   ..|.||||+|+..|  +.++
T Consensus        82 ------~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~  155 (364)
T 3ljn_A           82 ------WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEM  155 (364)
T ss_dssp             ------BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHH
T ss_pred             ------cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHH
Confidence                  4699999999999999999999998    665542                   46899999999999  9999


Q ss_pred             HHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCC-----cccCCCCCCChhhHHHHHHHHhhhceeeeccC
Q 038432          461 MEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSD-----VVGANKCEFSSTNLNDMLQKREIGHRITVHDD  535 (602)
Q Consensus       461 ~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~-----~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~  535 (602)
                      +++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++     ++.+|..|.||||+|+..++.++++.|+.++.
T Consensus       156 v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga  235 (364)
T 3ljn_A          156 IKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGI  235 (364)
T ss_dssp             HHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTC
T ss_pred             HHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999     99999999999999999999999999988764


Q ss_pred             C
Q 038432          536 N  536 (602)
Q Consensus       536 ~  536 (602)
                      +
T Consensus       236 d  236 (364)
T 3ljn_A          236 D  236 (364)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=8.6e-34  Score=286.57  Aligned_cols=206  Identities=21%  Similarity=0.272  Sum_probs=178.6

Q ss_pred             CCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCC-CCchHHHHHHhcCChHHHHHHHhcccCCCchhh------HHHHh
Q 038432          328 DPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDS-KGRTPLHIAASKGHEECVLVLLKHASNVHLRDY------IIFMY  400 (602)
Q Consensus       328 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~-~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~------~~~~~  400 (602)
                      +.+|.|+||.|++.|++++|++|+++|+|+|.++. .|+||||+||..|+.++|++|+++|++++..+.      .....
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~  101 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAI  101 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHh
Confidence            34578999999999999999999999999999875 599999999999999999999999999988761      11111


Q ss_pred             ccchhH----------HHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC------------CCcchhHHHHHhcCCH
Q 038432          401 NLSYDI----------IILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP------------YTAGDLLCTAEKRNDM  458 (602)
Q Consensus       401 ~~~~~~----------~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~------------~~g~t~L~~A~~~~~~  458 (602)
                      ......          ++..|..|.||||+|+..|+.+++++|+++|++++.            ..|.||||+|+..|+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~  181 (337)
T 4g8k_A          102 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV  181 (337)
T ss_dssp             HTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCH
T ss_pred             cccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCH
Confidence            111111          234578899999999999999999999999998864            3588999999999999


Q ss_pred             HHHHHHHH-cCCCCCCCCCCCcCHHHHHHHcCc----HHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeec
Q 038432          459 SVMEELVK-YGLNVDSKDRHGRTAIEIAMAENN----VEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVH  533 (602)
Q Consensus       459 ~~~~~Ll~-~ga~~n~~d~~g~TpLh~A~~~~~----~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~  533 (602)
                      +++++|++ .|+++|.+|..|.||||.++..++    ..++++|+++|+|++.+|..|.||||+|+..++.++++.|...
T Consensus       182 ~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~  261 (337)
T 4g8k_A          182 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ  261 (337)
T ss_dssp             HHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS
T ss_pred             HHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh
Confidence            99999996 699999999999999999886544    4689999999999999999999999999999999988887764

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=2.4e-34  Score=279.41  Aligned_cols=200  Identities=21%  Similarity=0.172  Sum_probs=172.9

Q ss_pred             CCCchhhhHhhhcCcHHHHHHHH----hcCCCCCCCC----CCCchHHHHHH---hcCChHHHHHHHhcccCCCchhhHH
Q 038432          329 PNMSVNLLTVASTGNAAFLDELL----KARLDPDIGD----SKGRTPLHIAA---SKGHEECVLVLLKHASNVHLRDYII  397 (602)
Q Consensus       329 ~~g~t~L~~A~~~g~~~~~~~Ll----~~g~~~n~~d----~~g~t~Lh~A~---~~g~~~~v~~Ll~~g~~~~~~~~~~  397 (602)
                      ..|+++||.|++.|+.+.++.|+    +.|++++..+    ..|.||||+|+   ..|+.+++++|++.|++++......
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   82 (260)
T 3jxi_A            3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI   82 (260)
T ss_dssp             CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred             cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence            45789999999999999555544    5899999765    77999999999   7799999999999997754432000


Q ss_pred             HHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCCC----------------CcchhHHHHHhcCCHHHH
Q 038432          398 FMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPY----------------TAGDLLCTAEKRNDMSVM  461 (602)
Q Consensus       398 ~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~----------------~g~t~L~~A~~~~~~~~~  461 (602)
                         .   ..+...|..|.||||+|+..|+.+++++|+++|++++..                .|.||||+|+..|+.+++
T Consensus        83 ---~---~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v  156 (260)
T 3jxi_A           83 ---N---SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIV  156 (260)
T ss_dssp             ---T---CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHH
T ss_pred             ---c---ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHH
Confidence               0   000011358999999999999999999999999999884                499999999999999999


Q ss_pred             HHHHH---cCCCCCCCCCCCcCHHHHHHHcCc---------HHHHHHHHHCCCCc-------ccCCCCCCChhhHHHHHH
Q 038432          462 EELVK---YGLNVDSKDRHGRTAIEIAMAENN---------VEMVNFLVMNGSDV-------VGANKCEFSSTNLNDMLQ  522 (602)
Q Consensus       462 ~~Ll~---~ga~~n~~d~~g~TpLh~A~~~~~---------~~iv~~Ll~~ga~~-------~~~d~~g~t~l~~a~~~~  522 (602)
                      ++|++   +|+++|.+|..|+||||+|+..++         .+++++|+++|+++       +.+|..|.||||+|+..+
T Consensus       157 ~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g  236 (260)
T 3jxi_A          157 HYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG  236 (260)
T ss_dssp             HHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred             HHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcC
Confidence            99999   999999999999999999998887         79999999999999       789999999999999999


Q ss_pred             HHhhhceeeecc
Q 038432          523 KREIGHRITVHD  534 (602)
Q Consensus       523 ~~~~~~~l~~~~  534 (602)
                      +.++++.|+.++
T Consensus       237 ~~~~v~~Ll~~g  248 (260)
T 3jxi_A          237 KIGIFQHIIRRE  248 (260)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhC
Confidence            999999988776

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=9.3e-34  Score=270.98  Aligned_cols=208  Identities=19%  Similarity=0.197  Sum_probs=182.4

Q ss_pred             HHHhhhhhhcccccccccccCC------CCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCC
Q 038432          303 FLQQHKKLKDLNIGDLIAESGE------EDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGH  376 (602)
Q Consensus       303 ll~~~~~~~~~~~~~~l~~~~~------~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~  376 (602)
                      .+..+...+..+..+.+++.+.      +..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+
T Consensus        11 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   90 (236)
T 1ikn_D           11 FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGC   90 (236)
T ss_dssp             TTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTC
T ss_pred             hhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence            3556677788888888887653      4477889999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--C-CcchhHHHHH
Q 038432          377 EECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--Y-TAGDLLCTAE  453 (602)
Q Consensus       377 ~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~-~g~t~L~~A~  453 (602)
                      .+++++|+++|++++...           .++..+..|.||||+|+..|+.+++++|+++|++++.  . .|.||||+|+
T Consensus        91 ~~~v~~Ll~~~~~~~~~~-----------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~  159 (236)
T 1ikn_D           91 LASVGVLTQSCTTPHLHS-----------ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV  159 (236)
T ss_dssp             HHHHHHHHHSTTTTSSSC-----------GGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH
T ss_pred             HHHHHHHHhcccchhHHH-----------HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH
Confidence            999999999998753221           1122247899999999999999999999999999987  3 8999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcc--cCCCCCCChhhHHHHH
Q 038432          454 KRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVV--GANKCEFSSTNLNDML  521 (602)
Q Consensus       454 ~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~--~~d~~g~t~l~~a~~~  521 (602)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++..  ..+..|.||.+.+...
T Consensus       160 ~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  229 (236)
T 1ikn_D          160 DLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF  229 (236)
T ss_dssp             HTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred             HcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhccc
Confidence            9999999999999999999999999999999999999999999999999886  8899999999887543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.6e-33  Score=274.65  Aligned_cols=229  Identities=21%  Similarity=0.279  Sum_probs=151.3

Q ss_pred             CCchhhhHhhhcCcHHHHHHHHhcCCCCCCC-CCCCchHHHHHHhcCChHHHHHHHhcccCCCchh------hHHHHhcc
Q 038432          330 NMSVNLLTVASTGNAAFLDELLKARLDPDIG-DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD------YIIFMYNL  402 (602)
Q Consensus       330 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~-d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~------~~~~~~~~  402 (602)
                      +|.||||.|+..|+.+++++|++.|++++.. +..|.||||+|+..|+.+++++|+++|++++..+      ...+...+
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   83 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence            5789999999999999999999999999988 8889999999999999999999999999999876      22233334


Q ss_pred             chhHHHHh----------hccCCcHHHHHHHcCChhHHHHHHhcCCCCCC------------CCcchhHHHHHhcCCHHH
Q 038432          403 SYDIIILL----------DMNGNTALWEAISSKHHSIFRILYHCTAISDP------------YTAGDLLCTAEKRNDMSV  460 (602)
Q Consensus       403 ~~~~~~~~----------~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~------------~~g~t~L~~A~~~~~~~~  460 (602)
                      +.+++..+          |..|.||||+|+..|+.+++++|+++|++++.            ..|.||||.|+..|+.++
T Consensus        84 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  163 (285)
T 1wdy_A           84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  163 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred             CHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHH
Confidence            44443322          44455666666666666666666666555542            235556666666666666


Q ss_pred             HHHHHHc-CCCCCCCCCCCcCHHHHHHHcCc----HHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeeccC
Q 038432          461 MEELVKY-GLNVDSKDRHGRTAIEIAMAENN----VEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDD  535 (602)
Q Consensus       461 ~~~Ll~~-ga~~n~~d~~g~TpLh~A~~~~~----~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~  535 (602)
                      +++|+++ |++++.+|..|.||||+|+..++    .+++++|+++|++++.+|..|.||||+|+..++.++++.|+..  
T Consensus       164 v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--  241 (285)
T 1wdy_A          164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ--  241 (285)
T ss_dssp             HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS--
T ss_pred             HHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc--
Confidence            6666654 66666666666666666666555    5566666666666666666666666666666555555555441  


Q ss_pred             CCchhHHHhhhhhhhhhhhhcCCCCCCcceeEEEecCCC
Q 038432          536 NSTQNEVLLKKLEIIDFEAKEGKSKGGNCQRVSIYRGHP  574 (602)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  574 (602)
                                    .+.........|.++.+.++..|+.
T Consensus       242 --------------~g~~~~~~~~~g~t~l~~A~~~~~~  266 (285)
T 1wdy_A          242 --------------EHIEINDTDSDGKTALLLAVELKLK  266 (285)
T ss_dssp             --------------SSCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             --------------cCCCccccCCCCCcHHHHHHHcCcH
Confidence                          1111222334556666666666654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=4.7e-33  Score=252.20  Aligned_cols=167  Identities=21%  Similarity=0.242  Sum_probs=154.2

Q ss_pred             CchhhhHhhhcCcHHHHHHHHhcCCC-CCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHH
Q 038432          331 MSVNLLTVASTGNAAFLDELLKARLD-PDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL  409 (602)
Q Consensus       331 g~t~L~~A~~~g~~~~~~~Ll~~g~~-~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~  409 (602)
                      +.||||.|+..|+.++++.|++.|.+ ++.+|..|+||||+|+..|+.+++++|+++|++++..+               
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~---------------   66 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILA---------------   66 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC---------------
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhc---------------
Confidence            46899999999999999999999877 89999999999999999999999999999999999998               


Q ss_pred             hhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHH
Q 038432          410 LDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMA  487 (602)
Q Consensus       410 ~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~  487 (602)
                        ..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus        67 --~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  144 (172)
T 3v30_A           67 --KERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVA  144 (172)
T ss_dssp             --TTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             --ccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence              8999999999999999999999999999987  789999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHCCCCcccCCCCCCCh
Q 038432          488 ENNVEMVNFLVMNGSDVVGANKCEFSS  514 (602)
Q Consensus       488 ~~~~~iv~~Ll~~ga~~~~~d~~g~t~  514 (602)
                      .|+.+++++|+++|+++..++..|.||
T Consensus       145 ~~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          145 LGYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             HTCHHHHHHHHHHHHHHSCC-------
T ss_pred             hCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence            999999999999999999999999988

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=2e-32  Score=262.15  Aligned_cols=192  Identities=18%  Similarity=0.114  Sum_probs=180.9

Q ss_pred             CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhH
Q 038432          327 GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDI  406 (602)
Q Consensus       327 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~  406 (602)
                      .+..|.|||+.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..+            
T Consensus         5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~------------   72 (240)
T 3eu9_A            5 IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG------------   72 (240)
T ss_dssp             CSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCB------------
T ss_pred             cccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhc------------
Confidence            46678999999999999999999999999999999999999999999999999999999999998765            


Q ss_pred             HHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHH
Q 038432          407 IILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEI  484 (602)
Q Consensus       407 ~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~  484 (602)
                          +..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus        73 ----~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~  148 (240)
T 3eu9_A           73 ----GDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMW  148 (240)
T ss_dssp             ----TTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ----CCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHH
Confidence                35699999999999999999999999999987  788999999999999999999999999999999999999999


Q ss_pred             HHHcCc-HHHHHHHHHCCCCcccCCC-CCCChhhHHHHHHHHhhhceeeecc
Q 038432          485 AMAENN-VEMVNFLVMNGSDVVGANK-CEFSSTNLNDMLQKREIGHRITVHD  534 (602)
Q Consensus       485 A~~~~~-~~iv~~Ll~~ga~~~~~d~-~g~t~l~~a~~~~~~~~~~~l~~~~  534 (602)
                      |+..++ .+++++|++.|++++..+. .|.||||+|+..++.++++.|+.++
T Consensus       149 a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  200 (240)
T 3eu9_A          149 AAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAG  200 (240)
T ss_dssp             HHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence            997766 8999999999999999998 9999999999999999888887765

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=1.9e-33  Score=275.09  Aligned_cols=186  Identities=17%  Similarity=0.189  Sum_probs=176.6

Q ss_pred             chhhhHhhhcCcHHHHHHHHhcCCC--CCCCCCCCchHHHHHHhcCChHHHHHHHhccc-CCCchhhHHHHhccchhHHH
Q 038432          332 SVNLLTVASTGNAAFLDELLKARLD--PDIGDSKGRTPLHIAASKGHEECVLVLLKHAS-NVHLRDYIIFMYNLSYDIII  408 (602)
Q Consensus       332 ~t~L~~A~~~g~~~~~~~Ll~~g~~--~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~~~~~~~~~~~~  408 (602)
                      .+++|.|+..|+.+.++.+++.+.+  +|.+|.+|+||||+||..|+.++|++|++.|+ +++..+              
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~--------------  142 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQN--------------  142 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCC--------------
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCC--------------
Confidence            5789999999999999999988766  89999999999999999999999999999998 999988              


Q ss_pred             HhhccCCcHHHHHH-----HcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCH
Q 038432          409 LLDMNGNTALWEAI-----SSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTA  481 (602)
Q Consensus       409 ~~~~~g~tpLh~A~-----~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~Tp  481 (602)
                         ..|.||||+|+     ..++.+++++|++.|++.+.  ..|.||||+|+..|+.+++++|+++|+|+|.+|.+|+||
T Consensus       143 ---~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~Tp  219 (276)
T 4hbd_A          143 ---RAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTA  219 (276)
T ss_dssp             ---TTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             ---CCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH
Confidence               99999999999     66899999999999988876  679999999999999999999999999999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHH-CCCCcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432          482 IEIAMAENNVEMVNFLVM-NGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD  534 (602)
Q Consensus       482 Lh~A~~~~~~~iv~~Ll~-~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~  534 (602)
                      ||+|+..|+.+++++|++ .|+|++.+|.+|.||||+|+..++.++++.|+.+.
T Consensus       220 Lh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          220 LMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            999999999999999999 89999999999999999999999999999887664

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.98  E-value=5.2e-33  Score=279.00  Aligned_cols=183  Identities=19%  Similarity=0.193  Sum_probs=158.5

Q ss_pred             cccccccccCCCC---CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCC---hHHHHHHHhcc
Q 038432          314 NIGDLIAESGEED---GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGH---EECVLVLLKHA  387 (602)
Q Consensus       314 ~~~~~l~~~~~~~---~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~---~~~v~~Ll~~g  387 (602)
                      .+.+.+.+.+.+.   ++.+|.||||+||..|+.+++++|++.|+++|.+|..|+||||+|+..|+   .++++.|++.+
T Consensus       111 ~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~  190 (327)
T 1sw6_A          111 EVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL  190 (327)
T ss_dssp             HHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhh
Confidence            4455566666543   67899999999999999999999999999999999999999999999999   79999999986


Q ss_pred             -cCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHH----cCChhHHHHHHhc--------------------CCCCCC
Q 038432          388 -SNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAIS----SKHHSIFRILYHC--------------------TAISDP  442 (602)
Q Consensus       388 -~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~----~~~~~~~~~Ll~~--------------------g~~~~~  442 (602)
                       ++++..|                 ..|+||||+|+.    .|+.+++++|++.                    |++++.
T Consensus       191 ~~~~~~~d-----------------~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~  253 (327)
T 1sw6_A          191 YPCLILED-----------------SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND  253 (327)
T ss_dssp             GGGGGEEC-----------------TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------
T ss_pred             hccccCCC-----------------CCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccc
Confidence             7888887                 999999999999    8999999999987                    777776


Q ss_pred             --CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHH
Q 038432          443 --YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDM  520 (602)
Q Consensus       443 --~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~  520 (602)
                        ..|.||||.|+.      +++|+++  ++|.+|..|+||||+|+..|+.++|++|+++|||++.+|..|+||||+|+.
T Consensus       254 ~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~  325 (327)
T 1sw6_A          254 KNGERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG  325 (327)
T ss_dssp             ------CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC
T ss_pred             ccccCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHh
Confidence              789999999996      8999998  689999999999999999999999999999999999999999999999975


Q ss_pred             H
Q 038432          521 L  521 (602)
Q Consensus       521 ~  521 (602)
                      .
T Consensus       326 ~  326 (327)
T 1sw6_A          326 L  326 (327)
T ss_dssp             -
T ss_pred             c
Confidence            4

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.98  E-value=3.7e-32  Score=243.62  Aligned_cols=156  Identities=24%  Similarity=0.306  Sum_probs=148.3

Q ss_pred             CCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHH
Q 038432          330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL  409 (602)
Q Consensus       330 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~  409 (602)
                      ...||||.|+..|+.++++.|++.|+++|.+|..|+||||+|+. |+.+++++|+++|++++..+               
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~---------------   67 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKD---------------   67 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCC---------------
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCC---------------
Confidence            45799999999999999999999999999999999999999999 99999999999999999998               


Q ss_pred             hhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCC-CCCCCCCCcCHHHHHH
Q 038432          410 LDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLN-VDSKDRHGRTAIEIAM  486 (602)
Q Consensus       410 ~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~-~n~~d~~g~TpLh~A~  486 (602)
                        ..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+
T Consensus        68 --~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~  145 (162)
T 1ihb_A           68 --RTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR  145 (162)
T ss_dssp             --TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH
T ss_pred             --CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHH
Confidence              8999999999999999999999999999887  7899999999999999999999999998 6999999999999999


Q ss_pred             HcCcHHHHHHHHHCCCC
Q 038432          487 AENNVEMVNFLVMNGSD  503 (602)
Q Consensus       487 ~~~~~~iv~~Ll~~ga~  503 (602)
                      ..|+.+++++|+++|||
T Consensus       146 ~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          146 LYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HTTCHHHHHHHHHTC--
T ss_pred             HcCCHHHHHHHHHhCCC
Confidence            99999999999999986

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.98  E-value=5.4e-32  Score=243.88  Aligned_cols=159  Identities=20%  Similarity=0.266  Sum_probs=147.7

Q ss_pred             CCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHH
Q 038432          330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL  409 (602)
Q Consensus       330 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~  409 (602)
                      .|.||||.|+..|+.++++.|++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++..+               
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~---------------   66 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG---------------   66 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC---------------
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcC---------------
Confidence            57899999999999999999999999999999999999999999999999999999999999887               


Q ss_pred             hhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHH
Q 038432          410 LDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMA  487 (602)
Q Consensus       410 ~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~  487 (602)
                        ..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus        67 --~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~  144 (167)
T 3v31_A           67 --KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVA  144 (167)
T ss_dssp             --TTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             --CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence              8999999999999999999999999998887  678999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHCCCCcc
Q 038432          488 ENNVEMVNFLVMNGSDVV  505 (602)
Q Consensus       488 ~~~~~iv~~Ll~~ga~~~  505 (602)
                      .|+.+++++|+++++++.
T Consensus       145 ~~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A          145 LGYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             HTCHHHHHHHHHHHHHHC
T ss_pred             cCcHHHHHHHHHHHHHHH
Confidence            999999999998877654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.98  E-value=1.2e-31  Score=242.05  Aligned_cols=158  Identities=29%  Similarity=0.389  Sum_probs=145.5

Q ss_pred             CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhH
Q 038432          327 GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDI  406 (602)
Q Consensus       327 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~  406 (602)
                      ..+.+.++|+.||+.|+.+++++|++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++..|            
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~------------   77 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD------------   77 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC------------
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC------------
Confidence            34567899999999999999999999999999999999999999999999999999999999999987            


Q ss_pred             HHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHH
Q 038432          407 IILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEI  484 (602)
Q Consensus       407 ~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~  484 (602)
                           ..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus        78 -----~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~  152 (169)
T 2y1l_E           78 -----HAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDI  152 (169)
T ss_dssp             -----TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             -----CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence                 8999999999999999999999999998887  678999999999999999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHHHHCC
Q 038432          485 AMAENNVEMVNFLVMNG  501 (602)
Q Consensus       485 A~~~~~~~iv~~Ll~~g  501 (602)
                      |+..|+.+++++|+++|
T Consensus       153 A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          153 SIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHTTCHHHHHHHHTC-
T ss_pred             HHHhCCHHHHHHHHHcC
Confidence            99999999999999876

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.98  E-value=4.8e-32  Score=250.27  Aligned_cols=158  Identities=21%  Similarity=0.251  Sum_probs=85.1

Q ss_pred             CCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcC
Q 038432          358 DIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCT  437 (602)
Q Consensus       358 n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g  437 (602)
                      |.+|..|+||||+||..|+.+++++|+++|++++..+                 ..|.||||+|+..|+.+++++|+++|
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g   91 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKD-----------------IEGSTALIWAVKNNRLGIAEKLLSKG   91 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCC-----------------TTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccccccc-----------------ccCccHHHHHHHcCCHHHHHHHHHCC
Confidence            3445555555555555555555555555555555444                 45555555555555555555555555


Q ss_pred             CCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChh
Q 038432          438 AISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSST  515 (602)
Q Consensus       438 ~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l  515 (602)
                      ++++.  ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+
T Consensus        92 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l  171 (192)
T 2rfm_A           92 SNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAE  171 (192)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHH
T ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence            55444  3455555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             hHHHHHHHHhhhceeee
Q 038432          516 NLNDMLQKREIGHRITV  532 (602)
Q Consensus       516 ~~a~~~~~~~~~~~l~~  532 (602)
                      |+|+..++.++++.|..
T Consensus       172 ~~A~~~~~~~~v~~Ll~  188 (192)
T 2rfm_A          172 ASARIFGRQEVIKIFTE  188 (192)
T ss_dssp             HHHHHTTCHHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHh
Confidence            55555555555555443

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=3.7e-32  Score=250.99  Aligned_cols=161  Identities=20%  Similarity=0.197  Sum_probs=155.5

Q ss_pred             CCCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccc
Q 038432          324 EEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLS  403 (602)
Q Consensus       324 ~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~  403 (602)
                      .+.++..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..|         
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~---------   98 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKD---------   98 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC---------
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCC---------
Confidence            45578899999999999999999999999999999999999999999999999999999999999999998         


Q ss_pred             hhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCH
Q 038432          404 YDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTA  481 (602)
Q Consensus       404 ~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~Tp  481 (602)
                              ..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus        99 --------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  170 (192)
T 2rfm_A           99 --------FSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTA  170 (192)
T ss_dssp             --------TTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBH
T ss_pred             --------CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence                    8999999999999999999999999999987  789999999999999999999999999999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHHCC
Q 038432          482 IEIAMAENNVEMVNFLVMNG  501 (602)
Q Consensus       482 Lh~A~~~~~~~iv~~Ll~~g  501 (602)
                      ||+|+..|+.+++++|+++|
T Consensus       171 l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          171 EASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCcHHHHHHHHhcc
Confidence            99999999999999999875

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=2.5e-31  Score=251.64  Aligned_cols=185  Identities=20%  Similarity=0.165  Sum_probs=169.8

Q ss_pred             HHhhhhhhcccccccccccCCCC--CCCCCchhhhHhhhcCcHHHHHHHHhcCC-CCCCCCCCCchHHHHHHhcCChHHH
Q 038432          304 LQQHKKLKDLNIGDLIAESGEED--GDPNMSVNLLTVASTGNAAFLDELLKARL-DPDIGDSKGRTPLHIAASKGHEECV  380 (602)
Q Consensus       304 l~~~~~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~-~~n~~d~~g~t~Lh~A~~~g~~~~v  380 (602)
                      +..+...++.+..+.|++.+.+.  .+..|.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+..|+.+++
T Consensus        29 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~  108 (223)
T 2f8y_A           29 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGML  108 (223)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHH
Confidence            34455556666666666666443  67889999999999999999999999987 8999999999999999999999999


Q ss_pred             HHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCH
Q 038432          381 LVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDM  458 (602)
Q Consensus       381 ~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~  458 (602)
                      ++|+++|++++..+                 ..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..|+.
T Consensus       109 ~~Ll~~g~~~~~~~-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  171 (223)
T 2f8y_A          109 EDLINSHADVNAVD-----------------DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSY  171 (223)
T ss_dssp             HHHHHTTCCTTCBC-----------------TTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHcCCCCcCcC-----------------CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCH
Confidence            99999999999998                 8999999999999999999999999999987  7899999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcc
Q 038432          459 SVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVV  505 (602)
Q Consensus       459 ~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~  505 (602)
                      +++++|+++|++++.+|..|.||||+|+..++.+++++|+++|+...
T Consensus       172 ~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          172 ETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred             HHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence            99999999999999999999999999999999999999999999764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=2.8e-31  Score=246.96  Aligned_cols=178  Identities=18%  Similarity=0.211  Sum_probs=160.3

Q ss_pred             hhhhhcccccccccccCC---CCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHH
Q 038432          307 HKKLKDLNIGDLIAESGE---EDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVL  383 (602)
Q Consensus       307 ~~~~~~~~~~~~l~~~~~---~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~L  383 (602)
                      +...++.+..+.++..+.   +..+.+|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|
T Consensus        12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L   91 (201)
T 3hra_A           12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYM   91 (201)
T ss_dssp             HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            344444444444444432   34678899999999999999999999999999999999999999999999999999999


Q ss_pred             H-hcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcC-CCCCC--CCcchhHHHHHhcCC--
Q 038432          384 L-KHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCT-AISDP--YTAGDLLCTAEKRND--  457 (602)
Q Consensus       384 l-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g-~~~~~--~~g~t~L~~A~~~~~--  457 (602)
                      + ..+++++..+                 ..|.||||+|+..|+.+++++|+++| ++++.  ..|.||||+|+..++  
T Consensus        92 l~~~~~~~~~~~-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~  154 (201)
T 3hra_A           92 LKHATPDLNKHN-----------------RYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGN  154 (201)
T ss_dssp             HHHSCCCTTCCC-----------------TTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCS
T ss_pred             HhccCccccccc-----------------CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccch
Confidence            9 5677999888                 89999999999999999999999999 88876  789999999999998  


Q ss_pred             ---HHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCC
Q 038432          458 ---MSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNG  501 (602)
Q Consensus       458 ---~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~g  501 (602)
                         .+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus       155 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          155 QLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             hhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence               99999999999999999999999999999999999999999987

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=3.7e-34  Score=271.53  Aligned_cols=185  Identities=19%  Similarity=0.093  Sum_probs=172.5

Q ss_pred             CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhH
Q 038432          327 GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDI  406 (602)
Q Consensus       327 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~  406 (602)
                      .+.+|.||||.|+..|+.++++.|++.|+++|.+|..|+||||+||..|+.+++++|+++|+++|..|            
T Consensus        17 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d------------   84 (229)
T 2vge_A           17 ARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPD------------   84 (229)
T ss_dssp             TTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC------------
T ss_pred             cccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC------------
Confidence            45678899999999999999999999999999999999999999999999999999999999999998            


Q ss_pred             HHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC---CCcchhHHHH--HhcCCHHHHHHHHHcCCCCCCCCCCCcCH
Q 038432          407 IILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP---YTAGDLLCTA--EKRNDMSVMEELVKYGLNVDSKDRHGRTA  481 (602)
Q Consensus       407 ~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~---~~g~t~L~~A--~~~~~~~~~~~Ll~~ga~~n~~d~~g~Tp  481 (602)
                           ..|.||||+|+..|+.+++++|+++|++++.   ..|.||||+|  +..|+.+++++|+++|++++.+|..|.||
T Consensus        85 -----~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~  159 (229)
T 2vge_A           85 -----SHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYA  159 (229)
T ss_dssp             -----TTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEE
T ss_pred             -----CCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHH
Confidence                 8999999999999999999999999999987   4899999999  99999999999999999999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHHCCCC--cccCCCCCCChhhHHHHHHHHhhhceee
Q 038432          482 IEIAMAENNVEMVNFLVMNGSD--VVGANKCEFSSTNLNDMLQKREIGHRIT  531 (602)
Q Consensus       482 Lh~A~~~~~~~iv~~Ll~~ga~--~~~~d~~g~t~l~~a~~~~~~~~~~~l~  531 (602)
                      +|.++..+.   .++|++.|++  ++.+|.+|+||||+|+..|+.++++...
T Consensus       160 l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          160 LWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             SSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             HHHHhhccc---cccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence            997665543   3688899999  7889999999999999999999887643

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=4.1e-32  Score=265.60  Aligned_cols=213  Identities=15%  Similarity=0.139  Sum_probs=164.7

Q ss_pred             HHHHHhhhhhhccccccccccc----CCCC------CCCCCchhhhHhhhc---CcHHHHHHHHhcCCCC-------CC-
Q 038432          301 KNFLQQHKKLKDLNIGDLIAES----GEED------GDPNMSVNLLTVAST---GNAAFLDELLKARLDP-------DI-  359 (602)
Q Consensus       301 ~~ll~~~~~~~~~~~~~~l~~~----~~~~------~~~~g~t~L~~A~~~---g~~~~~~~Ll~~g~~~-------n~-  359 (602)
                      ...+..+...++.+..+.|++.    +.+.      .+..|.||||+|+..   |+.+++++|++.|+++       |. 
T Consensus        14 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~   93 (273)
T 2pnn_A           14 RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNAS   93 (273)
T ss_dssp             HHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCC
T ss_pred             chHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcc
Confidence            3456667777888888877753    3322      377899999999976   9999999999988653       22 


Q ss_pred             ---CCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHh-
Q 038432          360 ---GDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYH-  435 (602)
Q Consensus       360 ---~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~-  435 (602)
                         .|..|.||||+|+..|+.++|++|+++|++++..+........   .....+..|.||||+|+..|+.+++++|++ 
T Consensus        94 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~---~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  170 (273)
T 2pnn_A           94 YTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKT---KGRPGFYFGELPLSLAACTNQLAIVKFLLQN  170 (273)
T ss_dssp             CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSC---SSSCCCCSCBSHHHHHHHTTCHHHHHHHHHC
T ss_pred             cccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccc---cccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence               5679999999999999999999999999999998700000000   000001179999999999999999999999 


Q ss_pred             --cCCCCCC--CCcchhHHHHHhcCC---------HHHHHHHHHcCCCCC-------CCCCCCcCHHHHHHHcCcHHHHH
Q 038432          436 --CTAISDP--YTAGDLLCTAEKRND---------MSVMEELVKYGLNVD-------SKDRHGRTAIEIAMAENNVEMVN  495 (602)
Q Consensus       436 --~g~~~~~--~~g~t~L~~A~~~~~---------~~~~~~Ll~~ga~~n-------~~d~~g~TpLh~A~~~~~~~iv~  495 (602)
                        +|++++.  ..|+||||+|+..|+         .+++++|+++|+++|       .+|..|+||||+|+..|+.++++
T Consensus       171 ~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~  250 (273)
T 2pnn_A          171 SWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLA  250 (273)
T ss_dssp             SSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHH
Confidence              9999987  789999999999998         899999999999997       48999999999999999999999


Q ss_pred             HHHHCCC-CcccCCCCCCChhh
Q 038432          496 FLVMNGS-DVVGANKCEFSSTN  516 (602)
Q Consensus       496 ~Ll~~ga-~~~~~d~~g~t~l~  516 (602)
                      +|+++|| |+......+.+|-+
T Consensus       251 ~Ll~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          251 YILQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             HHHHHHTC--------------
T ss_pred             HHHHCCCCCchhhhhhhhhccC
Confidence            9999999 89888888877643

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=1.4e-31  Score=244.04  Aligned_cols=166  Identities=22%  Similarity=0.235  Sum_probs=155.6

Q ss_pred             CCCchhhhHhhhcCcHHHHHHHHhc-CCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHH
Q 038432          329 PNMSVNLLTVASTGNAAFLDELLKA-RLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDII  407 (602)
Q Consensus       329 ~~g~t~L~~A~~~g~~~~~~~Ll~~-g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~  407 (602)
                      +++.++||.||..|+.++++.|++. +.+++..|..|+||||+||..|+.+++++|+++|++++..+             
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-------------   69 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN-------------   69 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcC-------------
Confidence            5678999999999999999999997 67899999999999999999999999999999999999998             


Q ss_pred             HHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHH
Q 038432          408 ILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIA  485 (602)
Q Consensus       408 ~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A  485 (602)
                          ..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus        70 ----~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A  145 (179)
T 3f6q_A           70 ----RGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA  145 (179)
T ss_dssp             ----TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGS
T ss_pred             ----CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHH
Confidence                8999999999999999999999999999987  7899999999999999999999999999999999999999999


Q ss_pred             HHcCcHHHHHHHHHCCCCcccCCCCC
Q 038432          486 MAENNVEMVNFLVMNGSDVVGANKCE  511 (602)
Q Consensus       486 ~~~~~~~iv~~Ll~~ga~~~~~d~~g  511 (602)
                      +..++.+++++|+++|++++..+..+
T Consensus       146 ~~~~~~~~~~~L~~~g~~~~~~~~~~  171 (179)
T 3f6q_A          146 KAPLRELLRERAEKMGQNLNRIPYKD  171 (179)
T ss_dssp             CHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred             HHHHHHHHHHHHHHhhcCcccCCccc
Confidence            99999999999999999999877665

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}

Probab=99.97  E-value=6.4e-30  Score=236.99  Aligned_cols=194  Identities=16%  Similarity=0.324  Sum_probs=180.9

Q ss_pred             hhhHhHHHHhhhHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcchhHHHHhhCCHHHHHHHHHHhhHhhhhhhccccc
Q 038432          111 EGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKD  190 (602)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~ri~~y~~~~~~~~~~~~~~~l~~lp~~l~~~v~~~~~~~~l~~~~~f~~  190 (602)
                      +.+++..+|++++..+++||+.+++|++|+.||++|++|.|+.+..+++++++.||++||.++..+.+.++++++|+|++
T Consensus         2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~~   81 (198)
T 2ptm_A            2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFVG   81 (198)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchhc
Confidence            46778999999999999999999999999999999999999877788999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehhhhhcCCCceeEEE
Q 038432          191 VSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYR  270 (602)
Q Consensus       191 ~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~~ll~~~~~~~tv~  270 (602)
                      +|++++..++..++.+.|.||++|+++|+.++.+|||.+|.|+++..++ +  .+..+++|++||+.+++.+.+++.+++
T Consensus        82 l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~g-~--~~~~l~~G~~fGe~~~~~~~~~~~~~~  158 (198)
T 2ptm_A           82 ADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDG-V--IATSLSDGSYFGEICLLTRERRVASVK  158 (198)
T ss_dssp             CCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTTS-C--EEEEECTTCEESCHHHHHSSCCSSEEE
T ss_pred             CCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEecCC-e--EEEEecCCCEechHHHcCCCccceEEE
Confidence            9999999999999999999999999999999999999999999997332 2  788999999999999999999999999


Q ss_pred             EcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhh
Q 038432          271 TKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQH  307 (602)
Q Consensus       271 a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~  307 (602)
                      |.++|+++.+++++|.+++..+|+....+.+.+..+.
T Consensus       159 a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl  195 (198)
T 2ptm_A          159 CETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRRL  195 (198)
T ss_dssp             ESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTCC
T ss_pred             EeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888777665543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=6.1e-31  Score=236.96  Aligned_cols=155  Identities=20%  Similarity=0.244  Sum_probs=149.5

Q ss_pred             CCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC
Q 038432          363 KGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP  442 (602)
Q Consensus       363 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~  442 (602)
                      .|.||||.|+..|+.+++++|++.|++++..|                 ..|.||||+|+..|+.+++++|+++|++++.
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~   64 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTD-----------------EEGFTPLMWAAAHGQIAVVEFLLQNGADPQL   64 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCC-----------------TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCC-----------------CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC
Confidence            58999999999999999999999999999998                 8999999999999999999999999999986


Q ss_pred             --CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHH
Q 038432          443 --YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDM  520 (602)
Q Consensus       443 --~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~  520 (602)
                        ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+|++.+|..|.||+|+|+.
T Consensus        65 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~  144 (167)
T 3v31_A           65 LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVA  144 (167)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence              788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhceeeecc
Q 038432          521 LQKREIGHRITVHD  534 (602)
Q Consensus       521 ~~~~~~~~~l~~~~  534 (602)
                      .++.++++.|..+.
T Consensus       145 ~~~~~~~~~L~~~~  158 (167)
T 3v31_A          145 LGYRSVQQVIESHL  158 (167)
T ss_dssp             HTCHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHH
Confidence            99999988887664

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=9.7e-31  Score=236.13  Aligned_cols=156  Identities=23%  Similarity=0.278  Sum_probs=148.4

Q ss_pred             CCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCC
Q 038432          361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAIS  440 (602)
Q Consensus       361 d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~  440 (602)
                      ...+.||||.||..|+.+++++|+++|++++..|                 ..|.||||+|+..|+.+++++|+++|+++
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   73 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAED-----------------ASGWTPLHLAAFNGHLEIVEVLLKNGADV   73 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC-----------------TTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCC-----------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            4567899999999999999999999999999998                 89999999999999999999999999998


Q ss_pred             CC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHH
Q 038432          441 DP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLN  518 (602)
Q Consensus       441 ~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a  518 (602)
                      +.  ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+|++.+|..|.||+|+|
T Consensus        74 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  153 (169)
T 2y1l_E           74 NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDIS  153 (169)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            87  7799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhceeeec
Q 038432          519 DMLQKREIGHRITVH  533 (602)
Q Consensus       519 ~~~~~~~~~~~l~~~  533 (602)
                      +..++.++++.|...
T Consensus       154 ~~~~~~~~~~~L~~~  168 (169)
T 2y1l_E          154 IDNGNEDLAEILQKL  168 (169)
T ss_dssp             HHTTCHHHHHHHHTC
T ss_pred             HHhCCHHHHHHHHHc
Confidence            999999998887654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=1.8e-30  Score=230.23  Aligned_cols=148  Identities=28%  Similarity=0.349  Sum_probs=94.0

Q ss_pred             chhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhh
Q 038432          332 SVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLD  411 (602)
Q Consensus       332 ~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~  411 (602)
                      .++||.|+..|+.+++++|++.|++++ .|..|.||||+|+..|+.+++++|+++|++++..+                 
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-----------------   64 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART-----------------   64 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCC-----------------
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC-----------------
Confidence            466777777777777777777766655 46667777777777777777777777777776665                 


Q ss_pred             ccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcC
Q 038432          412 MNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAEN  489 (602)
Q Consensus       412 ~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~  489 (602)
                      ..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus        65 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~  144 (153)
T 1awc_B           65 KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNG  144 (153)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence            6666666666666666666666666655554  44555555555555555555555555555555555555555555555


Q ss_pred             cHHHHHHH
Q 038432          490 NVEMVNFL  497 (602)
Q Consensus       490 ~~~iv~~L  497 (602)
                      +.+++++|
T Consensus       145 ~~~i~~~L  152 (153)
T 1awc_B          145 NEDLAEIL  152 (153)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHh
Confidence            55555554

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=2.1e-31  Score=257.91  Aligned_cols=185  Identities=19%  Similarity=0.213  Sum_probs=161.9

Q ss_pred             HHhhhhhhccccccccc----ccCCCC------CCCCCchhhhHhhhc---CcHHHHHHHHhcCCCCCCC----------
Q 038432          304 LQQHKKLKDLNIGDLIA----ESGEED------GDPNMSVNLLTVAST---GNAAFLDELLKARLDPDIG----------  360 (602)
Q Consensus       304 l~~~~~~~~~~~~~~l~----~~~~~~------~~~~g~t~L~~A~~~---g~~~~~~~Ll~~g~~~n~~----------  360 (602)
                      +..+...++.+..+.++    +.+.+.      .+.+|.||||+|+..   |+.+++++|++.|++++..          
T Consensus         6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~   85 (256)
T 2etb_A            6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTD   85 (256)
T ss_dssp             HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccccc
Confidence            44455555555443333    344432      477899999999999   9999999999998887643          


Q ss_pred             -CCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhcc-------------CCcHHHHHHHcCC
Q 038432          361 -DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMN-------------GNTALWEAISSKH  426 (602)
Q Consensus       361 -d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-------------g~tpLh~A~~~~~  426 (602)
                       |..|.||||+|+..|+.+++++|+++|++++..+                 ..             |.||||+|+..|+
T Consensus        86 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~-----------------~~~~~~~~~~~~~~~g~tpL~~A~~~~~  148 (256)
T 2etb_A           86 EFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA-----------------CGRFFQKHQGTCFYFGELPLSLAACTKQ  148 (256)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-----------------CSGGGSCCSSSCCCSCSSHHHHHHHTTC
T ss_pred             ccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccc-----------------ccccccccccccccCCCCHHHHHHHcCC
Confidence             4789999999999999999999999999999987                 44             9999999999999


Q ss_pred             hhHHHHHHh---cCCCCCC--CCcchhHHHHHh--cCCHH-------HHHHHHHcCCCC-------CCCCCCCcCHHHHH
Q 038432          427 HSIFRILYH---CTAISDP--YTAGDLLCTAEK--RNDMS-------VMEELVKYGLNV-------DSKDRHGRTAIEIA  485 (602)
Q Consensus       427 ~~~~~~Ll~---~g~~~~~--~~g~t~L~~A~~--~~~~~-------~~~~Ll~~ga~~-------n~~d~~g~TpLh~A  485 (602)
                      .+++++|++   +|++++.  ..|+||||+|+.  .++.+       ++++|+++|+++       +.+|..|+||||+|
T Consensus       149 ~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A  228 (256)
T 2etb_A          149 WDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLA  228 (256)
T ss_dssp             HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHH
T ss_pred             HHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHH
Confidence            999999999   9999987  789999999999  88888       999999999999       99999999999999


Q ss_pred             HHcCcHHHHHHHHHCCCCcc
Q 038432          486 MAENNVEMVNFLVMNGSDVV  505 (602)
Q Consensus       486 ~~~~~~~iv~~Ll~~ga~~~  505 (602)
                      +..|+.+++++|+++|++..
T Consensus       229 ~~~g~~~~v~~Ll~~g~~~~  248 (256)
T 2etb_A          229 AKEGKIEIFRHILQREFSGA  248 (256)
T ss_dssp             HHTTCHHHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHhCCCCCC
Confidence            99999999999999998764

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=7.2e-31  Score=236.00  Aligned_cols=157  Identities=22%  Similarity=0.320  Sum_probs=134.6

Q ss_pred             CCCCchhhhHhhhcCcHHHHHHHHh-cCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhH
Q 038432          328 DPNMSVNLLTVASTGNAAFLDELLK-ARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDI  406 (602)
Q Consensus       328 ~~~g~t~L~~A~~~g~~~~~~~Ll~-~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~  406 (602)
                      +.+|.||||.|+..|+.++++.|++ .+.+++..+..|.||||+|+..|+.+++++|+++|++++..|            
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~------------   72 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKD------------   72 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC------------
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccC------------
Confidence            5667899999999999999999988 466788888889999999999999999999999999999887            


Q ss_pred             HHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHH
Q 038432          407 IILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEI  484 (602)
Q Consensus       407 ~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~  484 (602)
                           ..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+
T Consensus        73 -----~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~  147 (165)
T 3twr_A           73 -----KGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL  147 (165)
T ss_dssp             -----TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGG
T ss_pred             -----CCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHh
Confidence                 8899999999999999999999888888876  678888888888888888888888888888888888888888


Q ss_pred             HHHcCcHHHHHHHHHCCC
Q 038432          485 AMAENNVEMVNFLVMNGS  502 (602)
Q Consensus       485 A~~~~~~~iv~~Ll~~ga  502 (602)
                      |+. ++.+++++|+++||
T Consensus       148 a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          148 VKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             SCT-TCHHHHHHHHTC--
T ss_pred             Hhc-CChHHHHHHhhccc
Confidence            766 88888888888876

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=2e-30  Score=229.88  Aligned_cols=149  Identities=23%  Similarity=0.256  Sum_probs=142.4

Q ss_pred             CchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC-
Q 038432          364 GRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP-  442 (602)
Q Consensus       364 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~-  442 (602)
                      +.||||.|+..|+.+++++|+++|++++. +                 ..|.||||+|+..|+.+++++|+++|++++. 
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~-~-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~   63 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFTT-D-----------------WLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR   63 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCCC-C-----------------TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCC
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCCc-C-----------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC
Confidence            56899999999999999999999998873 5                 7899999999999999999999999999987 


Q ss_pred             -CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHH
Q 038432          443 -YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDML  521 (602)
Q Consensus       443 -~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~  521 (602)
                       ..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||+|+|+..
T Consensus        64 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  143 (153)
T 1awc_B           64 TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDN  143 (153)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence             7799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcee
Q 038432          522 QKREIGHRI  530 (602)
Q Consensus       522 ~~~~~~~~l  530 (602)
                      ++.+++++|
T Consensus       144 ~~~~i~~~L  152 (153)
T 1awc_B          144 GNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHHHh
Confidence            999888765

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=1.4e-30  Score=233.31  Aligned_cols=156  Identities=22%  Similarity=0.250  Sum_probs=147.7

Q ss_pred             CCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCC
Q 038432          362 SKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISD  441 (602)
Q Consensus       362 ~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~  441 (602)
                      ....||||.|+..|+.+++++|+++|++++..+                 ..|.||||+|+. |+.+++++|+++|++++
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-----------------~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~   64 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQN-----------------GFGRTALQVMKL-GNPEIARRLLLRGANPD   64 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCC-----------------TTSCCHHHHCCS-SCHHHHHHHHHTTCCTT
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCCccccC-----------------ccCccHHHHHHc-CcHHHHHHHHHcCCCCC
Confidence            356799999999999999999999999999998                 899999999999 99999999999999998


Q ss_pred             C--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCC-cccCCCCCCChhhHH
Q 038432          442 P--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSD-VVGANKCEFSSTNLN  518 (602)
Q Consensus       442 ~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~-~~~~d~~g~t~l~~a  518 (602)
                      .  ..|.||||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|
T Consensus        65 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A  144 (162)
T 1ihb_A           65 LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA  144 (162)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHH
Confidence            7  7899999999999999999999999999999999999999999999999999999999998 599999999999999


Q ss_pred             HHHHHHhhhceeeeccC
Q 038432          519 DMLQKREIGHRITVHDD  535 (602)
Q Consensus       519 ~~~~~~~~~~~l~~~~~  535 (602)
                      +..++.++++.|+.+++
T Consensus       145 ~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A          145 RLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             HHTTCHHHHHHHHHTC-
T ss_pred             HHcCCHHHHHHHHHhCC
Confidence            99999999999887763

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*

Probab=99.97  E-value=2.7e-29  Score=233.53  Aligned_cols=196  Identities=16%  Similarity=0.308  Sum_probs=180.1

Q ss_pred             HhhhHhHHHHhhhHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcchhHHHHhhCCHHHHHHHHHHhhHhhhhhhcccc
Q 038432          110 VEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFK  189 (602)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~ri~~y~~~~~~~~~~~~~~~l~~lp~~l~~~v~~~~~~~~l~~~~~f~  189 (602)
                      ++++.+..+|++++..+++||+.++||++|+.||++|++|.|..+..+++++++.||+.||.++..+.+.++++++|+|.
T Consensus         2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f~   81 (202)
T 3bpz_A            2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLFA   81 (202)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCchh
Confidence            35678899999999999999999999999999999999999987778899999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehhhhhcCCCceeEE
Q 038432          190 DVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTY  269 (602)
Q Consensus       190 ~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~~ll~~~~~~~tv  269 (602)
                      +++++++..++..++.+.|.||++|+++|+.++.+|||.+|.|+++..+ +++   ..+++|++||+.+++.+.++++++
T Consensus        82 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~-g~~---~~l~~G~~fGe~~~~~~~~~~~~v  157 (202)
T 3bpz_A           82 NADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKG-NKE---MKLSDGSYFGEICLLTRGRRTASV  157 (202)
T ss_dssp             TSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECTT-SCC---EEEETTCEECHHHHHHCSBCSSEE
T ss_pred             cCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEECC-CeE---EEEcCCCEeccHHHhcCCCcccEE
Confidence            9999999999999999999999999999999999999999999998533 333   268999999999999999999999


Q ss_pred             EEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432          270 RTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK  309 (602)
Q Consensus       270 ~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~  309 (602)
                      +|.++|+++.+++++|.+++..+|.....+.+.+..+...
T Consensus       158 ~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~~  197 (202)
T 3bpz_A          158 RADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLDR  197 (202)
T ss_dssp             EESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHHHHH
T ss_pred             EEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988887776665544

>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B

Probab=99.97  E-value=1e-29  Score=238.32  Aligned_cols=196  Identities=18%  Similarity=0.296  Sum_probs=175.3

Q ss_pred             HHHHhhhHhHHHHhhhHHHHHhhhhcCCCChhHHHHHHHHHHHHHHh-hcchhHHHHhhCCHHHHHHHHHHhhHhhhhhh
Q 038432          107 NLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKA-ESLNQHQLIEQLPKSICKSICQHLFLHTVEKV  185 (602)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~ri~~y~~~~~~~-~~~~~~~~l~~lp~~l~~~v~~~~~~~~l~~~  185 (602)
                      .++++.+++..+|++++..+++||++++||++|+.||++|++|.|.. ++.+++++++.||++||.++..+++..++ ++
T Consensus         2 ~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~~   80 (212)
T 3ukn_A            2 AMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-QL   80 (212)
T ss_dssp             ----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-GS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-hc
Confidence            56788899999999999999999999999999999999999999985 56778899999999999999999998887 89


Q ss_pred             cccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehhhhhcCC--
Q 038432          186 YLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCR--  263 (602)
Q Consensus       186 ~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~~ll~~~--  263 (602)
                      |+|++++++++..++..++.+.|.||++|+++||.++.+|||.+|.|+++..    +..+..+++|++||+.+++.+.  
T Consensus        81 ~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~----~~~~~~l~~G~~fGe~~~~~~~~~  156 (212)
T 3ukn_A           81 PLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKD----NTVLAILGKGDLIGSDSLTKEQVI  156 (212)
T ss_dssp             GGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESS----SCEEEEECTTCEEECSCCSSSSCC
T ss_pred             HHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEEC----CeEEEEecCCCCcCcHHhccCCCC
Confidence            9999999999999999999999999999999999999999999999999962    2678999999999999999998  


Q ss_pred             CceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhh
Q 038432          264 PQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQH  307 (602)
Q Consensus       264 ~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~  307 (602)
                      +++++++|.++|+++.+++++|.+++..+|+....+++.+..+.
T Consensus       157 ~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l  200 (212)
T 3ukn_A          157 KTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDL  200 (212)
T ss_dssp             BBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHE
T ss_pred             CcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhh
Confidence            89999999999999999999999999999999988888776654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=9.5e-31  Score=253.95  Aligned_cols=200  Identities=14%  Similarity=0.050  Sum_probs=160.4

Q ss_pred             HHhhhhhhcccccccccc----cCCCC------CCCCCchhhhHhh---hcCcHHHHHHHHhcCCC-----------CCC
Q 038432          304 LQQHKKLKDLNIGDLIAE----SGEED------GDPNMSVNLLTVA---STGNAAFLDELLKARLD-----------PDI  359 (602)
Q Consensus       304 l~~~~~~~~~~~~~~l~~----~~~~~------~~~~g~t~L~~A~---~~g~~~~~~~Ll~~g~~-----------~n~  359 (602)
                      +..+...++.+..+.+++    .+.+.      .+..|.||||+|+   ..|+.+++++|++.|++           .+.
T Consensus         9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~   88 (260)
T 3jxi_A            9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD   88 (260)
T ss_dssp             HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence            444555555665554444    44433      2366999999999   78999999999998744           445


Q ss_pred             CCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHh---c
Q 038432          360 GDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYH---C  436 (602)
Q Consensus       360 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~---~  436 (602)
                      .|..|+||||+||..|+.++|++|+++|++++..+.......   .-....+..|.||||+|+..|+.+++++|++   +
T Consensus        89 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~---~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  165 (260)
T 3jxi_A           89 VYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQP---KDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK  165 (260)
T ss_dssp             SSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSS---SCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCc---ccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence            566999999999999999999999999999998860000000   0000000369999999999999999999999   9


Q ss_pred             CCCCCC--CCcchhHHHHHhcCC---------HHHHHHHHHcCCCC-------CCCCCCCcCHHHHHHHcCcHHHHHHHH
Q 038432          437 TAISDP--YTAGDLLCTAEKRND---------MSVMEELVKYGLNV-------DSKDRHGRTAIEIAMAENNVEMVNFLV  498 (602)
Q Consensus       437 g~~~~~--~~g~t~L~~A~~~~~---------~~~~~~Ll~~ga~~-------n~~d~~g~TpLh~A~~~~~~~iv~~Ll  498 (602)
                      |++++.  ..|+||||+|+..++         .+++++|+++|+++       +.+|..|+||||+|+..|+.+++++|+
T Consensus       166 ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll  245 (260)
T 3jxi_A          166 QADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHII  245 (260)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999987  789999999998888         79999999999999       679999999999999999999999999


Q ss_pred             HCCCCccc
Q 038432          499 MNGSDVVG  506 (602)
Q Consensus       499 ~~ga~~~~  506 (602)
                      ++|++...
T Consensus       246 ~~g~~~~~  253 (260)
T 3jxi_A          246 RREIADAA  253 (260)
T ss_dssp             HHHHHHHC
T ss_pred             HhCCCccc
Confidence            99987653

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=1.1e-29  Score=225.86  Aligned_cols=151  Identities=21%  Similarity=0.283  Sum_probs=138.8

Q ss_pred             CchhhhHhhhcCcHHHHHHHHhc-CCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHH
Q 038432          331 MSVNLLTVASTGNAAFLDELLKA-RLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL  409 (602)
Q Consensus       331 g~t~L~~A~~~g~~~~~~~Ll~~-g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~  409 (602)
                      +.||||.|+..|+.++++.|++. +.+++..|..|.||||+ +..|+.+++++|+++|++++..|               
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~---------------   65 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQD---------------   65 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCC---------------
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcC---------------
Confidence            56899999999999999999988 45899999999999999 99999999999999999999988               


Q ss_pred             hhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHH
Q 038432          410 LDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMA  487 (602)
Q Consensus       410 ~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~  487 (602)
                        ..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..|+.+++++|+++ ++++.+|.+|.||||+|+.
T Consensus        66 --~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~  142 (156)
T 1bd8_A           66 --TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQ  142 (156)
T ss_dssp             --TTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHH
T ss_pred             --CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHH
Confidence              8999999999999999999999999998887  6788999999999999999999988 9999999999999999999


Q ss_pred             cCcHHHHHHHHHC
Q 038432          488 ENNVEMVNFLVMN  500 (602)
Q Consensus       488 ~~~~~iv~~Ll~~  500 (602)
                      .|+.+++++|+++
T Consensus       143 ~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          143 RGAQDLVDILQGH  155 (156)
T ss_dssp             SCCHHHHHHHHTT
T ss_pred             cCcHHHHHHHHhh
Confidence            9999999999864

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=2.4e-31  Score=254.50  Aligned_cols=177  Identities=18%  Similarity=0.082  Sum_probs=133.5

Q ss_pred             CCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHH
Q 038432          329 PNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIII  408 (602)
Q Consensus       329 ~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~  408 (602)
                      ..|.||||.|++.|+.+.++.|+++|++++.. ..|.||||.|+..|+.+++++|++.|++++..|              
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d--------------   67 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPN--------------   67 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCC--------------
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcC--------------
Confidence            45899999999999999999999999999864 789999999999999999999999999999998              


Q ss_pred             HhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCc-CHHHHH
Q 038432          409 LLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGR-TAIEIA  485 (602)
Q Consensus       409 ~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~-TpLh~A  485 (602)
                         ..|.||||+|+..|+.+++++|+++|++++.  ..|+||||+|+..|+.+++++|+++|++++.+|..|. ||||+|
T Consensus        68 ---~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a  144 (239)
T 1ycs_B           68 ---DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKC  144 (239)
T ss_dssp             ---TTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHC
T ss_pred             ---CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHH
Confidence               9999999999999999999999999999987  7899999999999999999999999999999998887 999999


Q ss_pred             --HHcCcHHHHHHHHHCCCCcccC---------CCCCCChhhHHHHHHH
Q 038432          486 --MAENNVEMVNFLVMNGSDVVGA---------NKCEFSSTNLNDMLQK  523 (602)
Q Consensus       486 --~~~~~~~iv~~Ll~~ga~~~~~---------d~~g~t~l~~a~~~~~  523 (602)
                        +..|+.+++++|+++|++++..         |..|.+|++++...|.
T Consensus       145 ~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          145 EEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             CSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence              7889999999999999999877         5568888888755443

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=5.5e-30  Score=231.93  Aligned_cols=154  Identities=21%  Similarity=0.229  Sum_probs=145.6

Q ss_pred             CchHHHHHHhcCChHHHHHHHhcccC-CCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC
Q 038432          364 GRTPLHIAASKGHEECVLVLLKHASN-VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP  442 (602)
Q Consensus       364 g~t~Lh~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~  442 (602)
                      +.||||.|+..|+.++++.|++.+.+ ++..+                 ..|.||||+|+..|+.+++++|+++|++++.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~   64 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPD-----------------ERGFTPLIWASAFGEIETVRFLLEWGADPHI   64 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCC-----------------TTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCC-----------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCchh
Confidence            46899999999999999999999877 77776                 8999999999999999999999999999987


Q ss_pred             --CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHH
Q 038432          443 --YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDM  520 (602)
Q Consensus       443 --~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~  520 (602)
                        ..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus        65 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  144 (172)
T 3v30_A           65 LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVA  144 (172)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             hcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence              789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhceeeecc
Q 038432          521 LQKREIGHRITVHD  534 (602)
Q Consensus       521 ~~~~~~~~~l~~~~  534 (602)
                      .++.++++.|..++
T Consensus       145 ~~~~~~~~~L~~~~  158 (172)
T 3v30_A          145 LGYRKVQQVIENHI  158 (172)
T ss_dssp             HTCHHHHHHHHHHH
T ss_pred             hCcHHHHHHHHHHH
Confidence            99999888887665

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.96  E-value=7.9e-30  Score=252.86  Aligned_cols=181  Identities=19%  Similarity=0.194  Sum_probs=163.1

Q ss_pred             HhhhcCcHHHHHHHHhcCCCCCC---------CCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHH
Q 038432          337 TVASTGNAAFLDELLKARLDPDI---------GDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDII  407 (602)
Q Consensus       337 ~A~~~g~~~~~~~Ll~~g~~~n~---------~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~  407 (602)
                      .++..++.+.++.++....++..         .+..|.||||.||..|+.++|++|+++|+++|..|             
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~-------------   70 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYAN-------------   70 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBC-------------
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccC-------------
Confidence            46777888888888876544332         24568899999999999999999999999999998             


Q ss_pred             HHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCC---------
Q 038432          408 ILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDR---------  476 (602)
Q Consensus       408 ~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~---------  476 (602)
                          ..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..|+.+++++|+++|++++..|.         
T Consensus        71 ----~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  146 (299)
T 1s70_B           71 ----VDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIA  146 (299)
T ss_dssp             ----TTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             ----CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHH
Confidence                8999999999999999999999999999987  7799999999999999999999999999987764         


Q ss_pred             ---------------------------------------------------CCcCHHHHHHHcCcHHHHHHHHHCCCCcc
Q 038432          477 ---------------------------------------------------HGRTAIEIAMAENNVEMVNFLVMNGSDVV  505 (602)
Q Consensus       477 ---------------------------------------------------~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~  505 (602)
                                                                         .|.||||+|+..|+.+++++|+++|+|++
T Consensus       147 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~  226 (299)
T 1s70_B          147 EEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN  226 (299)
T ss_dssp             CSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT
T ss_pred             HhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC
Confidence                                                               46688899999999999999999999999


Q ss_pred             cCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432          506 GANKCEFSSTNLNDMLQKREIGHRITVHD  534 (602)
Q Consensus       506 ~~d~~g~t~l~~a~~~~~~~~~~~l~~~~  534 (602)
                      .+|..|.||||+|+..++.++++.|+..+
T Consensus       227 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  255 (299)
T 1s70_B          227 IKDYDGWTPLHAAAHWGKEEACRILVENL  255 (299)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CcCCCCCcHHHHHHhcCCHHHHHHHHHcC
Confidence            99999999999999999999888888766

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=1.1e-29  Score=248.28  Aligned_cols=161  Identities=22%  Similarity=0.268  Sum_probs=153.8

Q ss_pred             CCCCCCCCchhhhHhhhcCcHHHHHHHHhcCC-CCCCCCCCCchHHHHHH-----hcCChHHHHHHHhcccCCCchhhHH
Q 038432          324 EEDGDPNMSVNLLTVASTGNAAFLDELLKARL-DPDIGDSKGRTPLHIAA-----SKGHEECVLVLLKHASNVHLRDYII  397 (602)
Q Consensus       324 ~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~-~~n~~d~~g~t~Lh~A~-----~~g~~~~v~~Ll~~g~~~~~~~~~~  397 (602)
                      .+..+.+|.||||+|+..|+.+++++|++.|+ +++..|..|.||||+|+     ..++.+++++|++.|++++..+   
T Consensus       104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~---  180 (276)
T 4hbd_A          104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKAS---  180 (276)
T ss_dssp             HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCT---
T ss_pred             CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccC---
Confidence            45578899999999999999999999999998 99999999999999999     6789999999999999999887   


Q ss_pred             HHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHH-cCCCCCCC
Q 038432          398 FMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVK-YGLNVDSK  474 (602)
Q Consensus       398 ~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~-~ga~~n~~  474 (602)
                                    ..|.||||+|+..|+.+++++|+++|++++.  ..|+||||+|+..|+.+++++|++ .|+|+|.+
T Consensus       181 --------------~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~  246 (276)
T 4hbd_A          181 --------------QAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLT  246 (276)
T ss_dssp             --------------TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCC
T ss_pred             --------------CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCc
Confidence                          8999999999999999999999999999987  789999999999999999999999 89999999


Q ss_pred             CCCCcCHHHHHHHcCcHHHHHHHHHCC
Q 038432          475 DRHGRTAIEIAMAENNVEMVNFLVMNG  501 (602)
Q Consensus       475 d~~g~TpLh~A~~~~~~~iv~~Ll~~g  501 (602)
                      |..|+||||+|+..|+.+++++|++++
T Consensus       247 d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          247 DRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            999999999999999999999999864

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=1.2e-29  Score=231.18  Aligned_cols=158  Identities=16%  Similarity=0.175  Sum_probs=147.3

Q ss_pred             CCCchHHHHHHhcCChHHHHHHHhc-ccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCC
Q 038432          362 SKGRTPLHIAASKGHEECVLVLLKH-ASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAIS  440 (602)
Q Consensus       362 ~~g~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~  440 (602)
                      .++.+|||.||..|+.+++++|++. +.+++..+                 ..|.||||+|+..|+.+++++|+++|+++
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   65 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGD-----------------DHGFSPLHWACREGRSAVVEMLIMRGARI   65 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCC-----------------TTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccC-----------------CCCCCHHHHHHHcCcHHHHHHHHHcCCCC
Confidence            4678999999999999999999998 77889887                 89999999999999999999999999999


Q ss_pred             CC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHH
Q 038432          441 DP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLN  518 (602)
Q Consensus       441 ~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a  518 (602)
                      +.  ..|.||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|
T Consensus        66 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A  145 (179)
T 3f6q_A           66 NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA  145 (179)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGS
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHH
Confidence            87  7899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhceeeeccCC
Q 038432          519 DMLQKREIGHRITVHDDN  536 (602)
Q Consensus       519 ~~~~~~~~~~~l~~~~~~  536 (602)
                      +..++.++++.+...+.+
T Consensus       146 ~~~~~~~~~~~L~~~g~~  163 (179)
T 3f6q_A          146 KAPLRELLRERAEKMGQN  163 (179)
T ss_dssp             CHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHhhcC
Confidence            999999988888877643

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=6e-30  Score=229.98  Aligned_cols=157  Identities=23%  Similarity=0.163  Sum_probs=144.8

Q ss_pred             CCCCCchHHHHHHhcCChHHHHHHHh-cccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCC
Q 038432          360 GDSKGRTPLHIAASKGHEECVLVLLK-HASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTA  438 (602)
Q Consensus       360 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~  438 (602)
                      .|.+|.||||.|+..|+.++++.|++ .+.+++..+                 ..|.||||+|+..|+.+++++|+++|+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~   66 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIE-----------------GRQSTPLHFAAGYNRVSVVEYLLQHGA   66 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTT-----------------TTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccc-----------------cCCCCHHHHHHHcChHHHHHHHHhcCC
Confidence            46789999999999999999999998 466777776                 889999999999999999999999999


Q ss_pred             CCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhh
Q 038432          439 ISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTN  516 (602)
Q Consensus       439 ~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~  516 (602)
                      +++.  ..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||+|
T Consensus        67 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~  146 (165)
T 3twr_A           67 DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD  146 (165)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGG
T ss_pred             CCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhH
Confidence            9987  78999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhceeeecc
Q 038432          517 LNDMLQKREIGHRITVHD  534 (602)
Q Consensus       517 ~a~~~~~~~~~~~l~~~~  534 (602)
                      +|.. ++.+++++|...+
T Consensus       147 ~a~~-~~~~i~~~L~~~g  163 (165)
T 3twr_A          147 LVKD-GDTDIQDLLRGDA  163 (165)
T ss_dssp             GSCT-TCHHHHHHHHTC-
T ss_pred             hHhc-CChHHHHHHhhcc
Confidence            9876 7778888776554

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.96  E-value=2.1e-30  Score=259.93  Aligned_cols=178  Identities=17%  Similarity=0.141  Sum_probs=149.6

Q ss_pred             chhhhHhhhcCcHHHHHHHHhcCCCCCC-CCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHh
Q 038432          332 SVNLLTVASTGNAAFLDELLKARLDPDI-GDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILL  410 (602)
Q Consensus       332 ~t~L~~A~~~g~~~~~~~Ll~~g~~~n~-~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~  410 (602)
                      .+.+|.|+..+..++++.|++.|+++|. +|..|+||||+||..|+.++|++|+++|++++.+|                
T Consensus        98 ~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d----------------  161 (327)
T 1sw6_A           98 QQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD----------------  161 (327)
T ss_dssp             ------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCC----------------
T ss_pred             cchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcC----------------
Confidence            3456889989999999999999999999 89999999999999999999999999999999998                


Q ss_pred             hccCCcHHHHHHHcCC---hhHHHHHHhcC-CCCCC--CCcchhHHHHHh----cCCHHHHHHHHHc-------------
Q 038432          411 DMNGNTALWEAISSKH---HSIFRILYHCT-AISDP--YTAGDLLCTAEK----RNDMSVMEELVKY-------------  467 (602)
Q Consensus       411 ~~~g~tpLh~A~~~~~---~~~~~~Ll~~g-~~~~~--~~g~t~L~~A~~----~~~~~~~~~Ll~~-------------  467 (602)
                       ..|.||||+|+..|+   .++++.|++.+ ++++.  ..|+||||+|+.    .|+.+++++|++.             
T Consensus       162 -~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i  240 (327)
T 1sw6_A          162 -NMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPI  240 (327)
T ss_dssp             -TTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCE
T ss_pred             -CCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHH
Confidence             999999999999998   78888888887 56665  889999999999    8999999999987             


Q ss_pred             -------CCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432          468 -------GLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD  534 (602)
Q Consensus       468 -------ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~  534 (602)
                             |+++|.+|..|.||||.|+.      +++|+++  +++.+|..|+||||+|+..++.++++.|+.++
T Consensus       241 ~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~G  306 (327)
T 1sw6_A          241 QSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYG  306 (327)
T ss_dssp             EEC----------------CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTT
T ss_pred             HhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence                   89999999999999999996      9999998  68999999999999999999999998888776

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=4.2e-29  Score=222.15  Aligned_cols=151  Identities=21%  Similarity=0.206  Sum_probs=143.5

Q ss_pred             CchHHHHHHhcCChHHHHHHHhc-ccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC
Q 038432          364 GRTPLHIAASKGHEECVLVLLKH-ASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP  442 (602)
Q Consensus       364 g~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~  442 (602)
                      |.||||.|+..|+.+++++|++. +.+++..+                 ..|.||||+ +..|+.+++++|+++|++++.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-----------------~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~   63 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALN-----------------RFGKTALQV-MMFGSTAIALELLKQGASPNV   63 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCC-----------------TTSCCHHHH-SCTTCHHHHHHHHHTTCCTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccC-----------------CCCCcHHHH-HHcCCHHHHHHHHHCCCCCCC
Confidence            57999999999999999999998 45888887                 899999999 999999999999999999987


Q ss_pred             --CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHH
Q 038432          443 --YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDM  520 (602)
Q Consensus       443 --~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~  520 (602)
                        ..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++ ++++.+|..|.||||+|+.
T Consensus        64 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~  142 (156)
T 1bd8_A           64 QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQ  142 (156)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHH
Confidence              7899999999999999999999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             HHHHhhhceeeec
Q 038432          521 LQKREIGHRITVH  533 (602)
Q Consensus       521 ~~~~~~~~~l~~~  533 (602)
                      .++.++++.|..+
T Consensus       143 ~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          143 RGAQDLVDILQGH  155 (156)
T ss_dssp             SCCHHHHHHHHTT
T ss_pred             cCcHHHHHHHHhh
Confidence            9999998887643

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=6.9e-30  Score=242.12  Aligned_cols=197  Identities=18%  Similarity=0.064  Sum_probs=160.5

Q ss_pred             HHHHHhcCCCCCCC---CCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHH
Q 038432          347 LDELLKARLDPDIG---DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAIS  423 (602)
Q Consensus       347 ~~~Ll~~g~~~n~~---d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~  423 (602)
                      ++.|++.|++++..   +.+|.||||+|+..|+.+++++|++.|++++..|                 ..|.||||+|+.
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d-----------------~~g~tpLh~A~~   63 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPN-----------------EEGITALHNAIC   63 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCC-----------------TTSCCHHHHHHH
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCC-----------------CCCCCHHHHHHH
Confidence            46788899887765   4567889999999999999999999999999998                 999999999999


Q ss_pred             cCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCcCHHHHH--HHcCcHHHHHHHH
Q 038432          424 SKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKD-RHGRTAIEIA--MAENNVEMVNFLV  498 (602)
Q Consensus       424 ~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d-~~g~TpLh~A--~~~~~~~iv~~Ll  498 (602)
                      .|+.+++++|+++|++++.  ..|.||||+|+..|+.+++++|+++|++++.+| .+|+||||+|  +..|+.+++++|+
T Consensus        64 ~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll  143 (229)
T 2vge_A           64 GANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLA  143 (229)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHH
Confidence            9999999999999999987  789999999999999999999999999999997 6999999999  9999999999999


Q ss_pred             HCCCCcccCCCCCCChhhHHHHHHHHhhhceeeeccCCCchhHHHhhhhhhhhhhhhcCCCCCCcceeEEEecCCCcccc
Q 038432          499 MNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEGKSKGGNCQRVSIYRGHPLVRK  578 (602)
Q Consensus       499 ~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  578 (602)
                      ++|+|++.+|..|.||++.++...   ..+.+...+             ++  .........|.++.+.++..|+.-...
T Consensus       144 ~~ga~~~~~~~~~~~~l~~~~~~~---~~~~ll~~g-------------a~--~~~~~~d~~G~TpL~~A~~~g~~~~v~  205 (229)
T 2vge_A          144 DVEQSMGLMNSGAVYALWDYSAEF---GDELSFREG-------------ES--VTVLRRDGPEETDWWWAALHGQEGYVP  205 (229)
T ss_dssp             HHHHHTTTSGGGEEEESSCBCCSS---TTBCCBCTT-------------CE--EEEEESSCTTCSSEEEEEETTEEEEEE
T ss_pred             HcCCCcccccCCchHHHHHHhhcc---ccccCcccc-------------cc--ccccccCCCcccHHHHHHHcCCcceee
Confidence            999999999999999999653322   222333222             22  112334557899999999999964433

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=7.2e-29  Score=215.05  Aligned_cols=132  Identities=16%  Similarity=0.185  Sum_probs=122.8

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHH
Q 038432          354 RLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRIL  433 (602)
Q Consensus       354 g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L  433 (602)
                      ++++|..|..|.||||+|+..|+.+++++|+++|++++..+                 ..|.||||+|+. |+.+++++|
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-----------------~~g~t~L~~A~~-~~~~~v~~L   63 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALN-----------------RFGRRPIQVMMM-GSAQVAELL   63 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-----------------TTCCTTTTTSTT-SCHHHHHHH
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcC-----------------CCCCCHHHHHHc-CCHHHHHHH
Confidence            57888999999999999999999999999999999999887                 889999999999 999999999


Q ss_pred             HhcCCCCCC--CC-cchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCC
Q 038432          434 YHCTAISDP--YT-AGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSD  503 (602)
Q Consensus       434 l~~g~~~~~--~~-g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~  503 (602)
                      +++|++++.  .. |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|||
T Consensus        64 l~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           64 LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999998887  55 89999999999999999999999999999999999999999999999999999999986

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=99.96  E-value=2e-29  Score=255.16  Aligned_cols=214  Identities=20%  Similarity=0.307  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCCchHHHHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHH
Q 038432           15 DIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFN   94 (602)
Q Consensus        15 ~l~~~H~~aC~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g   94 (602)
                      +++++|++||++|.+....                +.+.+..|..|+||+++||||+||||+.|.|..+++++++++++|
T Consensus       136 ~~~~~~~~a~~~~~~e~~~----------------~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g  199 (355)
T 3beh_A          136 FGVVLFAVALAAYVIERDI----------------QPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSG  199 (355)
T ss_dssp             HHHHHHHHHHHHHHHHTTT----------------CHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCC----------------CCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHH
Confidence            6678899999999886321                112345799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhHhHHHHhhhHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcchhHHHHhhCCHHHHHHHH
Q 038432           95 LGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICKSIC  174 (602)
Q Consensus        95 ~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~ri~~y~~~~~~~~~~~~~~~l~~lp~~l~~~v~  174 (602)
                      ++++++++|.+.+.+.+..++                            ++++                           
T Consensus       200 ~~~~~~~~~~i~~~~~~~~~~----------------------------~~~~---------------------------  224 (355)
T 3beh_A          200 IGIFGLWAGILATGFYQEVRR----------------------------GDFV---------------------------  224 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH----------------------------HHHH---------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----------------------------Hhhc---------------------------
Confidence            999999999998766432110                            0010                           


Q ss_pred             HHhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCee
Q 038432          175 QHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMF  254 (602)
Q Consensus       175 ~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~f  254 (602)
                        ...+.++++|+|++++++.++.+...++.+.|+|||+|+++||.++.+|+|.+|.|+++..+      ...+++|++|
T Consensus       225 --~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~------~~~l~~G~~f  296 (355)
T 3beh_A          225 --RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN------PVELGPGAFF  296 (355)
T ss_dssp             --HHHC--------------------------------------------------------------------------
T ss_pred             --ccchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC------eeEECCCCEE
Confidence              02367889999999999999999999999999999999999999999999999999998654      2478999999


Q ss_pred             ehhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhh
Q 038432          255 GEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQH  307 (602)
Q Consensus       255 Ge~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~  307 (602)
                      |+.+++.+.+++.+++|.++|+++.++++++.++++++|+....+.+.+.++.
T Consensus       297 Ge~~~l~~~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~rl  349 (355)
T 3beh_A          297 GEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERR  349 (355)
T ss_dssp             -----------------------------------------------------
T ss_pred             eehHHhCCCCcceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998877776655543

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=5e-29  Score=221.60  Aligned_cols=143  Identities=16%  Similarity=0.184  Sum_probs=99.6

Q ss_pred             CCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcC
Q 038432          358 DIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCT  437 (602)
Q Consensus       358 n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g  437 (602)
                      +..+..|.||||+|+..|+.+++++|+++|++++..+                 ..|.||||+|+ .|+.+++++|+++|
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-----------------~~g~t~L~~A~-~~~~~~v~~Ll~~g   67 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPN-----------------SYGRRPIQVMM-MGSARVAELLLLHG   67 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCC-----------------SSSCCTTTSSC-TTCHHHHHHHHTTT
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCC-----------------CCCCCHHHHHH-cCCHHHHHHHHHcC
Confidence            3445667777777777777777777777777777766                 67777777764 67777777777777


Q ss_pred             CCCCC--CCcch-hHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCCh
Q 038432          438 AISDP--YTAGD-LLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSS  514 (602)
Q Consensus       438 ~~~~~--~~g~t-~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~  514 (602)
                      ++++.  ..|.| |||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus        68 ~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  147 (156)
T 1bi7_B           68 AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDA  147 (156)
T ss_dssp             CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-------------
T ss_pred             CCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcc
Confidence            77666  56666 8888888888888899999999999999999999999999999999999999999999999999999


Q ss_pred             hhHH
Q 038432          515 TNLN  518 (602)
Q Consensus       515 l~~a  518 (602)
                      .+-+
T Consensus       148 ~~~~  151 (156)
T 1bi7_B          148 AEGP  151 (156)
T ss_dssp             ----
T ss_pred             cccC
Confidence            8754

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=3e-29  Score=228.99  Aligned_cols=160  Identities=12%  Similarity=0.068  Sum_probs=136.4

Q ss_pred             CchhhhHhhhcCcHHHHHHHHhcCCCCCCCC-CCCchHHHHHHhcCCh----HHHHHHHhcccCCCchhhHHHHhccchh
Q 038432          331 MSVNLLTVASTGNAAFLDELLKARLDPDIGD-SKGRTPLHIAASKGHE----ECVLVLLKHASNVHLRDYIIFMYNLSYD  405 (602)
Q Consensus       331 g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d-~~g~t~Lh~A~~~g~~----~~v~~Ll~~g~~~~~~~~~~~~~~~~~~  405 (602)
                      +.++|+.|++.|+.+.++.++..+  ++..+ ..|+||||+|+..|+.    +++++|+++|+|+|.+|           
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d-----------   72 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKG--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRT-----------   72 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHS--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCC-----------
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcC--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCC-----------
Confidence            367899999999999999999876  45555 7799999999999975    59999999999999998           


Q ss_pred             HHHHhhccCCcHHHHHHHcCC------hhHHHHHHhcCCCCCC--CCcc-hhHHHHHhcC-----CHHHHHHHHH-cCCC
Q 038432          406 IIILLDMNGNTALWEAISSKH------HSIFRILYHCTAISDP--YTAG-DLLCTAEKRN-----DMSVMEELVK-YGLN  470 (602)
Q Consensus       406 ~~~~~~~~g~tpLh~A~~~~~------~~~~~~Ll~~g~~~~~--~~g~-t~L~~A~~~~-----~~~~~~~Ll~-~ga~  470 (602)
                            ..|+||||+|+..|+      .+++++|+++|+++|.  ..|. ||||+|+..+     ..+++++|++ +|+|
T Consensus        73 ------~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad  146 (186)
T 3t8k_A           73 ------KEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ  146 (186)
T ss_dssp             ------TTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC
T ss_pred             ------CCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC
Confidence                  999999999999987      5678899999998887  6777 8999888844     3568888888 8999


Q ss_pred             CCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCC
Q 038432          471 VDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK  509 (602)
Q Consensus       471 ~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~  509 (602)
                      +|.+|..|.||||+|+..|+.++|++|.++..+.+.+++
T Consensus       147 ~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~~  185 (186)
T 3t8k_A          147 LLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN  185 (186)
T ss_dssp             TTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC-
T ss_pred             CcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhcccC
Confidence            999999999999999999999999988887666665553

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=1.1e-28  Score=235.87  Aligned_cols=156  Identities=15%  Similarity=0.150  Sum_probs=112.9

Q ss_pred             CCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCC
Q 038432          361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAIS  440 (602)
Q Consensus       361 d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~  440 (602)
                      +..|.||||.|+..|+.++++.|+++|++++..                  ..|.||||.|+..|+.+++++|++.|+++
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~------------------~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~   63 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN------------------PLPLALLLDSSLEGEFDLVQRIIYEVDDP   63 (239)
T ss_dssp             -----------------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcccC------------------chhhHHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            457999999999999999999999999999864                  67899999999999999999999999999


Q ss_pred             CC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCC-ChhhH
Q 038432          441 DP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEF-SSTNL  517 (602)
Q Consensus       441 ~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~-t~l~~  517 (602)
                      +.  ..|.||||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+..|+.+++++|+++|+|++.+|..|. ||+|+
T Consensus        64 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~  143 (239)
T 1ycs_B           64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADK  143 (239)
T ss_dssp             CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHH
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHH
Confidence            87  7899999999999999999999999999999999999999999999999999999999999999999887 99999


Q ss_pred             H--HHHHHHhhhceeeecc
Q 038432          518 N--DMLQKREIGHRITVHD  534 (602)
Q Consensus       518 a--~~~~~~~~~~~l~~~~  534 (602)
                      |  +..++.++++.|...+
T Consensus       144 a~~~~~g~~~~~~~Ll~~~  162 (239)
T 1ycs_B          144 CEEMEEGYTQCSQFLYGVQ  162 (239)
T ss_dssp             CCSSSTTCCCHHHHHHHHH
T ss_pred             HHHhhhccHHHHHHHHHhh
Confidence            8  5666677776666554

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=8.8e-28  Score=213.54  Aligned_cols=142  Identities=20%  Similarity=0.140  Sum_probs=118.3

Q ss_pred             CCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchh
Q 038432          326 DGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYD  405 (602)
Q Consensus       326 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~  405 (602)
                      ..+..|.||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+ .|+.+++++|+++|++++..|           
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d-----------   74 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCAD-----------   74 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCC-----------
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcC-----------
Confidence            34667899999999999999999999999999999999999999985 999999999999999999998           


Q ss_pred             HHHHhhccCCc-HHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHH
Q 038432          406 IIILLDMNGNT-ALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAI  482 (602)
Q Consensus       406 ~~~~~~~~g~t-pLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpL  482 (602)
                            ..|.| |||+|+..|+.+++++|+++|++++.  ..|.||||+|+..|+.+++++|+++|++++.+|..|.||.
T Consensus        75 ------~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~  148 (156)
T 1bi7_B           75 ------PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAA  148 (156)
T ss_dssp             ------TTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC--------------
T ss_pred             ------CCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCccc
Confidence                  89999 99999999999999999999999987  7899999999999999999999999999999999999998


Q ss_pred             HHH
Q 038432          483 EIA  485 (602)
Q Consensus       483 h~A  485 (602)
                      +-+
T Consensus       149 ~~~  151 (156)
T 1bi7_B          149 EGP  151 (156)
T ss_dssp             ---
T ss_pred             ccC
Confidence            854

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=7.2e-28  Score=219.87  Aligned_cols=153  Identities=10%  Similarity=0.080  Sum_probs=136.7

Q ss_pred             CchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCCh----hHHHHHHhcCCC
Q 038432          364 GRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHH----SIFRILYHCTAI  439 (602)
Q Consensus       364 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~----~~~~~Ll~~g~~  439 (602)
                      +.++|+.|+..|+.+.++.+++.+.  +..+                +..|+||||+|+.+|+.    +++++|+++|++
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~----------------~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad   67 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKE----------------SVLKSNILYDVLRNNNDEARYKISMFLINKGAD   67 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS--SCHH----------------HHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc--cccc----------------ccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC
Confidence            5689999999999999999998764  3443                36799999999999975    599999999999


Q ss_pred             CCC--CCcchhHHHHHhcCC------HHHHHHHHHcCCCCCCCCCCCc-CHHHHHHHcC-----cHHHHHHHHH-CCCCc
Q 038432          440 SDP--YTAGDLLCTAEKRND------MSVMEELVKYGLNVDSKDRHGR-TAIEIAMAEN-----NVEMVNFLVM-NGSDV  504 (602)
Q Consensus       440 ~~~--~~g~t~L~~A~~~~~------~~~~~~Ll~~ga~~n~~d~~g~-TpLh~A~~~~-----~~~iv~~Ll~-~ga~~  504 (602)
                      +|.  ..|+||||+|+..|+      .+++++|+++|+|+|.+|..|+ ||||+|+..+     +.+++++|++ +|+|+
T Consensus        68 vn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~  147 (186)
T 3t8k_A           68 IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL  147 (186)
T ss_dssp             SSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT
T ss_pred             CCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC
Confidence            998  789999999999987      6789999999999999999999 9999999944     4679999999 99999


Q ss_pred             ccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432          505 VGANKCEFSSTNLNDMLQKREIGHRITVHD  534 (602)
Q Consensus       505 ~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~  534 (602)
                      +.+|..|.||||+|+..++.++++.|....
T Consensus       148 ~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          148 LIKDKWGLTALEFVKRCQKPIALKMMEDYI  177 (186)
T ss_dssp             TCCCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999999988887776543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=4.3e-26  Score=194.49  Aligned_cols=124  Identities=32%  Similarity=0.528  Sum_probs=119.1

Q ss_pred             CCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC
Q 038432          363 KGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP  442 (602)
Q Consensus       363 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~  442 (602)
                      +|+||||+|+..|+.+++++|+++|++++..+                 ..|.||||+|+..|+.+++++|+++|++++.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-----------------~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~   63 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKD-----------------KNGRTPLHLAARNGHLEVVKLLLEAGADVNA   63 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCC-----------------TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcC-----------------CCCCcHHHHHHHcCcHHHHHHHHHcCCCCcc
Confidence            58999999999999999999999999999887                 8999999999999999999999999999887


Q ss_pred             --CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCC
Q 038432          443 --YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSD  503 (602)
Q Consensus       443 --~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~  503 (602)
                        ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|||
T Consensus        64 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             cCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence              6799999999999999999999999999999999999999999999999999999999986

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=1.1e-26  Score=201.26  Aligned_cols=122  Identities=14%  Similarity=0.085  Sum_probs=118.0

Q ss_pred             ccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCC-CcCHHHHHHHc
Q 038432          412 MNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRH-GRTAIEIAMAE  488 (602)
Q Consensus       412 ~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~-g~TpLh~A~~~  488 (602)
                      ..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+. |+.+++++|+++|+++|.+|.. |+||||+|+..
T Consensus        10 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~   88 (136)
T 1d9s_A           10 GSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAARE   88 (136)
T ss_dssp             CCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHc
Confidence            9999999999999999999999999999987  789999999999 9999999999999999999999 99999999999


Q ss_pred             CcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432          489 NNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD  534 (602)
Q Consensus       489 ~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~  534 (602)
                      |+.+++++|+++|++++.+|..|.||||+|+..++.++++.|+.++
T Consensus        89 ~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G  134 (136)
T 1d9s_A           89 GFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT  134 (136)
T ss_dssp             TCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999998887665

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=3.8e-26  Score=197.81  Aligned_cols=121  Identities=25%  Similarity=0.330  Sum_probs=75.7

Q ss_pred             CchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC-
Q 038432          364 GRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP-  442 (602)
Q Consensus       364 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~-  442 (602)
                      |.||||+|+..|+.+++++|+++|++++..|                 ..|.||||+|+..|+.+++++|+++|++++. 
T Consensus        14 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~   76 (136)
T 2jab_A           14 LGKKLLEAARAGQDDEVRILMANGADVNAKD-----------------EYGLTPLYLATAHGHLEIVEVLLKNGADVNAV   76 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC-----------------TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             ccHHHHHHHHhCCHHHHHHHHHcCCCCCCcC-----------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcC
Confidence            4444444444444444444444444444444                 4444444444444444444444444444443 


Q ss_pred             -CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCC
Q 038432          443 -YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNG  501 (602)
Q Consensus       443 -~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~g  501 (602)
                       ..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|+++|
T Consensus        77 d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           77 DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence             34555555555566666677777888888888999999999999999999999999876

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.93  E-value=4.5e-28  Score=245.32  Aligned_cols=153  Identities=16%  Similarity=0.076  Sum_probs=111.9

Q ss_pred             CCchhhhHhhhcCcHHHHHHHHhcCCCC---CCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhH
Q 038432          330 NMSVNLLTVASTGNAAFLDELLKARLDP---DIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDI  406 (602)
Q Consensus       330 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~---n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~  406 (602)
                      ++.||||.||..|+.+++++|++.|+..   +..+..|.||||+||..|+.++|++|+++|++++..+            
T Consensus        91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~------------  158 (376)
T 2aja_A           91 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM------------  158 (376)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHH------------
T ss_pred             CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccc------------
Confidence            4468888888888888888888887632   2345567888888888888888888888887643222            


Q ss_pred             HHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC----CCcchhHHHHH-hcCCHHHHHHHHHcCCCCCCCCCCCcCH
Q 038432          407 IILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP----YTAGDLLCTAE-KRNDMSVMEELVKYGLNVDSKDRHGRTA  481 (602)
Q Consensus       407 ~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~----~~g~t~L~~A~-~~~~~~~~~~Ll~~ga~~n~~d~~g~Tp  481 (602)
                        ..+.+ .||||+|+..|+.+++++|+++|++++.    ..|.||||+|+ ..|+.+++++|+++|++       |.||
T Consensus       159 --i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-------~~ta  228 (376)
T 2aja_A          159 --IQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM-------LAYA  228 (376)
T ss_dssp             --HSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-------HHHH
T ss_pred             --cCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc-------cchH
Confidence              00122 7888888888888888888888887542    56778888888 88888888888887642       7788


Q ss_pred             HHHHHHcCcHHHHHHHHHCCCCc
Q 038432          482 IEIAMAENNVEMVNFLVMNGSDV  504 (602)
Q Consensus       482 Lh~A~~~~~~~iv~~Ll~~ga~~  504 (602)
                      ||+|+..|+.+++++|+++|+++
T Consensus       229 L~~Aa~~g~~evv~lL~~~ga~~  251 (376)
T 2aja_A          229 EIHEFEYGEKYVNPFIARHVNRL  251 (376)
T ss_dssp             HHCTTTTTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHhcCccc
Confidence            88888888888888888777654

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=2e-26  Score=199.88  Aligned_cols=133  Identities=23%  Similarity=0.321  Sum_probs=94.6

Q ss_pred             CCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHH
Q 038432          354 RLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRIL  433 (602)
Q Consensus       354 g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L  433 (602)
                      |+|+ .+|..|+||||+|+..|+.+++++|+++|++++..|                 ..|.||||+|+..|        
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-----------------~~g~t~L~~A~~~~--------   54 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKD-----------------HAGWTPLHEACNHG--------   54 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC-----------------TTSCCHHHHHHHTT--------
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCC-----------------CCCCCHHHHHHHcC--------
Confidence            4555 556666666666666666666666666666666665                 55555555555554        


Q ss_pred             HhcCCCCCCCCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCC
Q 038432          434 YHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFS  513 (602)
Q Consensus       434 l~~g~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t  513 (602)
                                             +.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus        55 -----------------------~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t  111 (137)
T 3c5r_A           55 -----------------------HLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLR  111 (137)
T ss_dssp             -----------------------CHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             -----------------------CHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence                                   455566666777778888888888999888888888888888888888888888899


Q ss_pred             hhhHHHHHHHHhhhceeeeccC
Q 038432          514 STNLNDMLQKREIGHRITVHDD  535 (602)
Q Consensus       514 ~l~~a~~~~~~~~~~~l~~~~~  535 (602)
                      |+|+|+..+..+++..+.....
T Consensus       112 pl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A          112 PVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             GGGGCCCHHHHHHHSCC-----
T ss_pred             HHHHHhhccHHHHHhhcccccc
Confidence            9998888888888887776553

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=7.2e-26  Score=196.39  Aligned_cols=102  Identities=17%  Similarity=0.119  Sum_probs=89.7

Q ss_pred             CCCCCC-CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChh
Q 038432          437 TAISDP-YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSST  515 (602)
Q Consensus       437 g~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l  515 (602)
                      |+|+.. ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus         1 G~d~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L   80 (137)
T 3c5r_A            1 GIDPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPL   80 (137)
T ss_dssp             ---CCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHH
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHH
Confidence            344433 6777888888888888889999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhhhceeeeccCCCc
Q 038432          516 NLNDMLQKREIGHRITVHDDNST  538 (602)
Q Consensus       516 ~~a~~~~~~~~~~~l~~~~~~~~  538 (602)
                      |+|+..++.++++.|+..+.+..
T Consensus        81 ~~A~~~~~~~~v~~Ll~~ga~~~  103 (137)
T 3c5r_A           81 HDAAKNGHVDIVKLLLSYGASRN  103 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCC
Confidence            99999999999999998765543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.92  E-value=9.4e-27  Score=212.79  Aligned_cols=138  Identities=24%  Similarity=0.210  Sum_probs=105.5

Q ss_pred             CCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCC
Q 038432          361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAIS  440 (602)
Q Consensus       361 d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~  440 (602)
                      +..|.||||+|+..|+.++++.|++ |++++..|                 ..|.||||+|+..|+.+++++|+++|+++
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  102 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVD-----------------ENGRTALLFVAGLGSDKCVRLLAEAGADL  102 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCC-----------------TTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcC-----------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            4467778888888888888887777 77777776                 77778888888777777777777777777


Q ss_pred             CC---CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhH
Q 038432          441 DP---YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNL  517 (602)
Q Consensus       441 ~~---~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~  517 (602)
                      +.   ..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..++.                 ..+.+|+++
T Consensus       103 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~  165 (183)
T 3deo_A          103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQF  165 (183)
T ss_dssp             TCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHH
T ss_pred             CcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHH
Confidence            65   4577888888888888888888888888888888888888888774432                 456788888


Q ss_pred             HHHHHHHhhhceeeec
Q 038432          518 NDMLQKREIGHRITVH  533 (602)
Q Consensus       518 a~~~~~~~~~~~l~~~  533 (602)
                      |+..+..++++.|..+
T Consensus       166 a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          166 GRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHcCHHHHHHHHHHh
Confidence            8888888877776543

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.92  E-value=3.9e-25  Score=191.45  Aligned_cols=125  Identities=26%  Similarity=0.263  Sum_probs=118.2

Q ss_pred             CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhH
Q 038432          327 GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDI  406 (602)
Q Consensus       327 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~  406 (602)
                      ....+.||||.|+..|+.+++++|++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++..|            
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d------------   77 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD------------   77 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC------------
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCC------------
Confidence            34567899999999999999999999999999999999999999999999999999999999999998            


Q ss_pred             HHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcC
Q 038432          407 IILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYG  468 (602)
Q Consensus       407 ~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~g  468 (602)
                           ..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..|+.+++++|+++|
T Consensus        78 -----~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           78 -----AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             -----TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             -----CCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence                 8999999999999999999999999999987  78999999999999999999999986

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=6.8e-25  Score=187.02  Aligned_cols=124  Identities=31%  Similarity=0.419  Sum_probs=120.2

Q ss_pred             CCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHH
Q 038432          330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL  409 (602)
Q Consensus       330 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~  409 (602)
                      +|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..+               
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~---------------   65 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD---------------   65 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC---------------
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccC---------------
Confidence            58999999999999999999999999999999999999999999999999999999999999998               


Q ss_pred             hhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCC
Q 038432          410 LDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLN  470 (602)
Q Consensus       410 ~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~  470 (602)
                        ..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..|+.+++++|+++|||
T Consensus        66 --~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           66 --KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             --TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             --CCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence              8999999999999999999999999999987  6899999999999999999999999986

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.92  E-value=2.5e-27  Score=239.77  Aligned_cols=206  Identities=12%  Similarity=0.014  Sum_probs=161.7

Q ss_pred             HHHHhhhhhhcccccccccccCCC-----CCCCCCchhhhHhhhcCcHHHHHHHHhcCCCC---CCCCCCCchHHHHHHh
Q 038432          302 NFLQQHKKLKDLNIGDLIAESGEE-----DGDPNMSVNLLTVASTGNAAFLDELLKARLDP---DIGDSKGRTPLHIAAS  373 (602)
Q Consensus       302 ~ll~~~~~~~~~~~~~~l~~~~~~-----~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~---n~~d~~g~t~Lh~A~~  373 (602)
                      +.+..+...++.+..+.|++.+..     ..+..|.||||+||..|+.+++++|++.|+++   +..+.+ .||||+||.
T Consensus        94 T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~  172 (376)
T 2aja_A           94 VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAE  172 (376)
T ss_dssp             HHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHH
Confidence            556778888888999988887752     23456889999999999999999999999763   333333 999999999


Q ss_pred             cCChHHHHHHHhcccCCCc--hhhHHHHhccchhHHHHhhccCCcHHHHHH-HcCChhHHHHHHhcCCCCCCCCcchhHH
Q 038432          374 KGHEECVLVLLKHASNVHL--RDYIIFMYNLSYDIIILLDMNGNTALWEAI-SSKHHSIFRILYHCTAISDPYTAGDLLC  450 (602)
Q Consensus       374 ~g~~~~v~~Ll~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~-~~~~~~~~~~Ll~~g~~~~~~~g~t~L~  450 (602)
                      .|+.++|++|+++|++++.  .|                 ..|.||||+|+ ..|+.+++++|+++|+     .|.||||
T Consensus       173 ~G~~eiv~~Ll~~ga~~~~~~~d-----------------~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-----~~~taL~  230 (376)
T 2aja_A          173 NGHLHVLNRLCELAPTEATAMIQ-----------------AENYYAFRWAAVGRGHHNVINFLLDCPV-----MLAYAEI  230 (376)
T ss_dssp             TTCHHHHHHHHHSCGGGHHHHHH-----------------HHHHHHHHHHHSTTCCHHHHHHHTTSHH-----HHHHHHH
T ss_pred             CCCHHHHHHHHHcCCccchhccC-----------------CCCCCHHHHHHHHCCCHHHHHHHHhCCC-----ccchHHH
Confidence            9999999999999999887  66                 78999999999 9999999999999886     3899999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCc---------------------------HHHHHHHHHCCC-
Q 038432          451 TAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENN---------------------------VEMVNFLVMNGS-  502 (602)
Q Consensus       451 ~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~---------------------------~~iv~~Ll~~ga-  502 (602)
                      .|+..|+.+++++|+++|++++..|    ++++.|+..|+                           .+.+++|++.++ 
T Consensus       231 ~Aa~~g~~evv~lL~~~ga~~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~v  306 (376)
T 2aja_A          231 HEFEYGEKYVNPFIARHVNRLKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGI  306 (376)
T ss_dssp             CTTTTTTTTHHHHHHHHHHHHHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTT
T ss_pred             HHHHCCCHHHHHHHHhcCccccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhh
Confidence            9999999999999999998876543    23444443333                           445566665321 


Q ss_pred             ----CcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432          503 ----DVVGANKCEFSSTNLNDMLQKREIGHRITVHD  534 (602)
Q Consensus       503 ----~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~  534 (602)
                          +.....+.+.||||+|+..|+.++++.|+..+
T Consensus       307 k~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~  342 (376)
T 2aja_A          307 KALAPTATIPGDANELLRLALRLGNQGACALLLSIP  342 (376)
T ss_dssp             GGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH
T ss_pred             hhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh
Confidence                11122235678999999999999999998754

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=2.6e-26  Score=219.95  Aligned_cols=166  Identities=22%  Similarity=0.164  Sum_probs=121.2

Q ss_pred             CCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHH
Q 038432          330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL  409 (602)
Q Consensus       330 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~  409 (602)
                      .+.+++..++..|+.+.+..+...+.++   +..|.||||+||..|+.+++++|++ |+++|..|               
T Consensus        14 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d---------------   74 (244)
T 3ui2_A           14 EGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLLE-DRDVDAVD---------------   74 (244)
T ss_dssp             TTEEEEEEEESSCCCCEEEEGGGSCHHH---HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBC---------------
T ss_pred             CCccHHHHHHHcCCCccccccccccccc---ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcC---------------
Confidence            3456666666666655544443333322   3467788888888888888888888 78888776               


Q ss_pred             hhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC---CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHH
Q 038432          410 LDMNGNTALWEAISSKHHSIFRILYHCTAISDP---YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAM  486 (602)
Q Consensus       410 ~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~---~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~  486 (602)
                        ..|.||||+|+..|+.+++++|+++|++++.   ..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+
T Consensus        75 --~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~  152 (244)
T 3ui2_A           75 --ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR  152 (244)
T ss_dssp             --TTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             --CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence              7788888888888888888888888887765   34778888888888888888888888888888888888888887


Q ss_pred             HcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeec
Q 038432          487 AENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVH  533 (602)
Q Consensus       487 ~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~  533 (602)
                      ..+                 .+..+.|||++|+..++.++++.|...
T Consensus       153 ~~~-----------------~~~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          153 EIL-----------------KTTPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             HHH-----------------TTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-----------------hccCCCCHHHHHHHcChHHHHHHHHHh
Confidence            522                 225678888888888888777776644

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=6e-25  Score=200.78  Aligned_cols=139  Identities=22%  Similarity=0.195  Sum_probs=128.6

Q ss_pred             CCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHH
Q 038432          328 DPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDII  407 (602)
Q Consensus       328 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~  407 (602)
                      +.+|.||||.|+..|+.++++.|++ |+++|.+|..|+||||+|+..|+.+++++|+++|++++..+             
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~-------------  106 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD-------------  106 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-------------
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCC-------------
Confidence            3478999999999999999999999 99999999999999999999999999999999999999886             


Q ss_pred             HHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHH
Q 038432          408 ILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIA  485 (602)
Q Consensus       408 ~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A  485 (602)
                         +..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..++.                 ..+.|||++|
T Consensus       107 ---~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a  166 (183)
T 3deo_A          107 ---MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFG  166 (183)
T ss_dssp             ---SSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHH
T ss_pred             ---CCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHH
Confidence               47899999999999999999999999999987  7899999999875432                 4578999999


Q ss_pred             HHcCcHHHHHHHHHC
Q 038432          486 MAENNVEMVNFLVMN  500 (602)
Q Consensus       486 ~~~~~~~iv~~Ll~~  500 (602)
                      +..|+.+++++|.++
T Consensus       167 ~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          167 RRIGLEKVINVLEGQ  181 (183)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHcCHHHHHHHHHHh
Confidence            999999999999875

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=6.5e-25  Score=210.26  Aligned_cols=142  Identities=21%  Similarity=0.188  Sum_probs=130.8

Q ss_pred             CCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHH
Q 038432          329 PNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIII  408 (602)
Q Consensus       329 ~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~  408 (602)
                      .+|.||||.|+..|+.++++.|++ |+++|.+|..|+||||+||..|+.++|++|+++|+++|..+              
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~--------------  107 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD--------------  107 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCC--------------
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCC--------------
Confidence            467899999999999999999999 99999999999999999999999999999999999999886              


Q ss_pred             HhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHH
Q 038432          409 LLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAM  486 (602)
Q Consensus       409 ~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~  486 (602)
                        +..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..++                 +..+.||||+|+
T Consensus       108 --~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~  168 (244)
T 3ui2_A          108 --MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK-----------------TTPKGNPMQFGR  168 (244)
T ss_dssp             --SSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHH
T ss_pred             --CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHH
Confidence              46799999999999999999999999999987  889999999986332                 256899999999


Q ss_pred             HcCcHHHHHHHHHCCCCc
Q 038432          487 AENNVEMVNFLVMNGSDV  504 (602)
Q Consensus       487 ~~~~~~iv~~Ll~~ga~~  504 (602)
                      ..|+.+++++|++++.+.
T Consensus       169 ~~g~~~iv~~L~~~~~~~  186 (244)
T 3ui2_A          169 RIGLEKVINVLEGQVFEY  186 (244)
T ss_dssp             HHHHHHHHHHHHHHHEEE
T ss_pred             HcChHHHHHHHHHhcccc
Confidence            999999999999976654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.91  E-value=1.6e-24  Score=213.69  Aligned_cols=140  Identities=14%  Similarity=0.074  Sum_probs=124.4

Q ss_pred             CCCchHHHHHHhcCChHHHHHHHhcccCCCc------hhhHHHHhccchhHHHHhhccCCcHHHHHHHc---CChhHHHH
Q 038432          362 SKGRTPLHIAASKGHEECVLVLLKHASNVHL------RDYIIFMYNLSYDIIILLDMNGNTALWEAISS---KHHSIFRI  432 (602)
Q Consensus       362 ~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~---~~~~~~~~  432 (602)
                      ..+.++||.|+..|+.+.++.|++.|++++.      .+                 ..|.||||+|+..   |+.+++++
T Consensus       149 ~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~-----------------~~g~t~Lh~A~~~~~~~~~~iv~~  211 (301)
T 2b0o_E          149 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQ-----------------APEELVLHLAVKVANQASLPLVDF  211 (301)
T ss_dssp             C-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSC-----------------SCEECHHHHHHHTCCTTTHHHHHH
T ss_pred             CchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccC-----------------CCCccHHHHHHHhcccCcHHHHHH
Confidence            3456889999999999999999999999987      45                 8899999999997   89999999


Q ss_pred             HHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCC
Q 038432          433 LYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKC  510 (602)
Q Consensus       433 Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~  510 (602)
                      |+++|++++.  ..|+||||+|+..|+.+++++|+++|+|++.+|.+|.||||+|+..|+.+++++|+++|++      .
T Consensus       212 Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~  285 (301)
T 2b0o_E          212 IIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------T  285 (301)
T ss_dssp             HHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------T
T ss_pred             HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------C
Confidence            9999999987  7899999999999999999999999999999999999999999999999999999999987      5


Q ss_pred             CCChhhHHHHHHHH
Q 038432          511 EFSSTNLNDMLQKR  524 (602)
Q Consensus       511 g~t~l~~a~~~~~~  524 (602)
                      |.||||+|+..|+.
T Consensus       286 g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          286 FAFPLHVDYSWVIS  299 (301)
T ss_dssp             TSSCCC--------
T ss_pred             CCChhHHHHhcCCc
Confidence            89999999987764

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.91  E-value=2.3e-24  Score=183.04  Aligned_cols=116  Identities=15%  Similarity=0.135  Sum_probs=107.1

Q ss_pred             hccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHc
Q 038432          411 DMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAE  488 (602)
Q Consensus       411 ~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~  488 (602)
                      +..|.||||+|+..|+.+++++|++.|++++.  ..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            36789999999999999999999999999987  6899999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhh
Q 038432          489 NNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREI  526 (602)
Q Consensus       489 ~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~  526 (602)
                      |+.+++++|+++|++++.+|..|.||+|+|...+..++
T Consensus        84 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~l  121 (123)
T 3aaa_C           84 GHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL  121 (123)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHH
Confidence            99999999999999999999999999999965554443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.91  E-value=5e-25  Score=208.08  Aligned_cols=133  Identities=19%  Similarity=0.202  Sum_probs=69.9

Q ss_pred             CCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhc-CCCCC
Q 038432          363 KGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHC-TAISD  441 (602)
Q Consensus       363 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~-g~~~~  441 (602)
                      .|.||||+||..|+.+++++|++.|++++..|                 ..|.||||+|+..|+.+++++|+++ |++++
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~  134 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECLDNRVGVNGLD-----------------KAGSTALYWACHGGHKDIVEMLFTQPNIELN  134 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-----------------TTSCCHHHHHHHTTCHHHHHHHTTSTTCCCC
T ss_pred             ccccccccccccCcHHHHHHHHhCCCCccccC-----------------CCCCCHHHHHHHcCCHHHHHHHHcCCCCCcc
Confidence            34444444444444444444444444444443                 4444444444444444444444444 44443


Q ss_pred             C--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCC
Q 038432          442 P--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEF  512 (602)
Q Consensus       442 ~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~  512 (602)
                      .  ..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..++.++++.|++.|++.+.+|..|.
T Consensus       135 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~~  207 (222)
T 3ehr_A          135 QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDY  207 (222)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhhh
Confidence            3  3445555555555666667777778888888889999999999999999999999999988887776654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.90  E-value=3e-24  Score=211.72  Aligned_cols=139  Identities=15%  Similarity=0.096  Sum_probs=124.0

Q ss_pred             CCchhhhHhhhcCcHHHHHHHHhcCCCCCC------CCCCCchHHHHHHhc---CChHHHHHHHhcccCCCchhhHHHHh
Q 038432          330 NMSVNLLTVASTGNAAFLDELLKARLDPDI------GDSKGRTPLHIAASK---GHEECVLVLLKHASNVHLRDYIIFMY  400 (602)
Q Consensus       330 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~------~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~~~~  400 (602)
                      .+.++|+.|+..|+.+.++.|++.|++++.      .|..|+||||+|+..   |+.+++++|+++|+++|..|      
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d------  223 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA------  223 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCC------
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCC------
Confidence            346789999999999999999999999998      699999999999997   89999999999999999998      


Q ss_pred             ccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCC
Q 038432          401 NLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHG  478 (602)
Q Consensus       401 ~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g  478 (602)
                                 ..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..|+.+++++|+++|++      .|
T Consensus       224 -----------~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g  286 (301)
T 2b0o_E          224 -----------ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TF  286 (301)
T ss_dssp             -----------TTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TT
T ss_pred             -----------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CC
Confidence                       9999999999999999999999999999987  7899999999999999999999999986      58


Q ss_pred             cCHHHHHHHcCcH
Q 038432          479 RTAIEIAMAENNV  491 (602)
Q Consensus       479 ~TpLh~A~~~~~~  491 (602)
                      .||||+|+..|+.
T Consensus       287 ~tpLh~A~~~g~~  299 (301)
T 2b0o_E          287 AFPLHVDYSWVIS  299 (301)
T ss_dssp             SSCCC--------
T ss_pred             CChhHHHHhcCCc
Confidence            9999999998864

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=4e-24  Score=181.57  Aligned_cols=115  Identities=18%  Similarity=0.104  Sum_probs=76.6

Q ss_pred             CCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCC
Q 038432          362 SKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISD  441 (602)
Q Consensus       362 ~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~  441 (602)
                      ..|.||||+|+..|+.+++++|++.|++++..|                 ..|.||||+|+..|+.+++++|+++|++++
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~   67 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTL-----------------EGGRKPLHYAADCGQLEILEFLLLKGADIN   67 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCC-----------------TTSSCHHHHHHHTTCHHHHHHHHTTTCCTT
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcCccC-----------------CCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            445566666666666666666666666666555                 556666666666666666666666666555


Q ss_pred             C--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHH
Q 038432          442 P--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEM  493 (602)
Q Consensus       442 ~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~i  493 (602)
                      .  ..|+||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..+..++
T Consensus        68 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~l  121 (123)
T 3aaa_C           68 APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL  121 (123)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHH
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHH
Confidence            4  456666666667777777888888888999999999999999954444433

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.89  E-value=2.8e-23  Score=196.03  Aligned_cols=125  Identities=14%  Similarity=0.107  Sum_probs=115.0

Q ss_pred             hccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCcCHHHHHHH
Q 038432          411 DMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKY-GLNVDSKDRHGRTAIEIAMA  487 (602)
Q Consensus       411 ~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~-ga~~n~~d~~g~TpLh~A~~  487 (602)
                      +..|.||||+|+..|+.+++++|++.|++++.  ..|.||||+|+..|+.+++++|+++ |+++|.+|..|+||||+|+.
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW  149 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence            48899999999999999999999999999986  7899999999999999999999998 99999999999999999999


Q ss_pred             cCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeeccC
Q 038432          488 ENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDD  535 (602)
Q Consensus       488 ~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~  535 (602)
                      .|+.+++++|+++|++++.+|..|.||||+|+..+..++++.+...+.
T Consensus       150 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~  197 (222)
T 3ehr_A          150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDA  197 (222)
T ss_dssp             HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence            999999999999999999999999999999999999999999887763

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.87  E-value=2e-22  Score=203.06  Aligned_cols=146  Identities=18%  Similarity=0.247  Sum_probs=100.0

Q ss_pred             CCCCchhhhHhhhc-CcHHHHHHHHhcCCCCCCCC--CCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccch
Q 038432          328 DPNMSVNLLTVAST-GNAAFLDELLKARLDPDIGD--SKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSY  404 (602)
Q Consensus       328 ~~~g~t~L~~A~~~-g~~~~~~~Ll~~g~~~n~~d--~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~  404 (602)
                      ...+.|+||.|+.. |+.++++.|++.|+++|..+  ..|.||||+|+..|+.++|++|+++|+++|..|          
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d----------  265 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQAD----------  265 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCC----------
Confidence            44567899999998 99999999999999999888  789999999999999999999999999999887          


Q ss_pred             hHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCCCCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHH
Q 038432          405 DIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEI  484 (602)
Q Consensus       405 ~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~  484 (602)
                             ..|.||||+|+..|+.++                               +++|+++|++++.+|.+|.||||+
T Consensus       266 -------~~G~TpLh~A~~~g~~~~-------------------------------v~~LL~~Gad~~~~d~~G~TpL~~  307 (368)
T 3jue_A          266 -------SAGRGPLHHATILGHTGL-------------------------------ACLFLKRGADLGARDSEGRDPLTI  307 (368)
T ss_dssp             -------TTSCCHHHHHHHHTCHHH-------------------------------HHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             -------CCCCCHHHHHHHcCcHHH-------------------------------HHHHHHCcCCCCCcCCCCCCHHHH
Confidence                   778888888877766655                               455555666666677777777777


Q ss_pred             HHHcCcHHHHHHHHHCC---CCcccCCCCCCChhhHHHHH
Q 038432          485 AMAENNVEMVNFLVMNG---SDVVGANKCEFSSTNLNDML  521 (602)
Q Consensus       485 A~~~~~~~iv~~Ll~~g---a~~~~~d~~g~t~l~~a~~~  521 (602)
                      |+..++.+++++|++.|   ++....+..+.|+++++...
T Consensus       308 A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          308 AMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HHHTTCHHHHHHHHHHHC----------------------
T ss_pred             HHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            77777777777777643   34445555666777666544

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.87  E-value=1.5e-21  Score=190.15  Aligned_cols=129  Identities=15%  Similarity=0.068  Sum_probs=115.7

Q ss_pred             chHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHc---CChhHHHHHHhcCCCCC
Q 038432          365 RTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISS---KHHSIFRILYHCTAISD  441 (602)
Q Consensus       365 ~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~---~~~~~~~~Ll~~g~~~~  441 (602)
                      .++|+.|+..|+.+.++.+++.|++++..-           .++..+..|.||||+|+..   |+.+++++|+++|++++
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~-----------~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in  199 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKI-----------PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD  199 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBC-----------CCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhc-----------cccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcc
Confidence            578999999999999999999999965330           0001127899999999999   89999999999999998


Q ss_pred             C--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCc
Q 038432          442 P--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV  504 (602)
Q Consensus       442 ~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~  504 (602)
                      .  ..|+||||+|+..|+.+++++|+++|+|+|.+|.+|.||||+|+..|+.+++++|+++|++.
T Consensus       200 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          200 KQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            7  78999999999999999999999999999999999999999999999999999999999854

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.87  E-value=2.8e-22  Score=202.02  Aligned_cols=122  Identities=15%  Similarity=0.125  Sum_probs=104.0

Q ss_pred             cCCcHHHHHHHc-CChhHHHHHHhcCCCCCC----CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHH
Q 038432          413 NGNTALWEAISS-KHHSIFRILYHCTAISDP----YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMA  487 (602)
Q Consensus       413 ~g~tpLh~A~~~-~~~~~~~~Ll~~g~~~~~----~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~  487 (602)
                      .+.||||.|+.. |+.++++.|+++|++++.    ..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+.
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~  277 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI  277 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            345666666666 666666666666666654    356777777788888888999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432          488 ENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD  534 (602)
Q Consensus       488 ~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~  534 (602)
                      .|+.+++++|+++|+|++.+|.+|.||||+|+..++.+++++|...+
T Consensus       278 ~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~  324 (368)
T 3jue_A          278 LGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAK  324 (368)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999998665

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.86  E-value=1.2e-21  Score=157.13  Aligned_cols=91  Identities=26%  Similarity=0.433  Sum_probs=81.4

Q ss_pred             cCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCc
Q 038432          413 NGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENN  490 (602)
Q Consensus       413 ~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~  490 (602)
                      +|+||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            478999999999999999999999998887  678899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCC
Q 038432          491 VEMVNFLVMNGSD  503 (602)
Q Consensus       491 ~~iv~~Ll~~ga~  503 (602)
                      .+++++|+++||+
T Consensus        81 ~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           81 LEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999885

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.86  E-value=1.1e-21  Score=191.13  Aligned_cols=190  Identities=15%  Similarity=0.097  Sum_probs=144.1

Q ss_pred             HHHHHHHhcCCCCCC-----CCCCCchHHHHHHhcCChHHHHHHHhccc-----CCCchh-------hHHHHhc-cch-h
Q 038432          345 AFLDELLKARLDPDI-----GDSKGRTPLHIAASKGHEECVLVLLKHAS-----NVHLRD-------YIIFMYN-LSY-D  405 (602)
Q Consensus       345 ~~~~~Ll~~g~~~n~-----~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~-----~~~~~~-------~~~~~~~-~~~-~  405 (602)
                      ++....-+.|..+..     .|..+.++++.+...|+..+.+++...-.     .++..+       +....+. ..+ .
T Consensus        42 ~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~  121 (278)
T 1dcq_A           42 ECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYAR  121 (278)
T ss_dssp             HHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSC
T ss_pred             HHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhccc
Confidence            343333344655553     57778888999888888877766643311     111111       0000000 000 0


Q ss_pred             HHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--------CCcchhHHHHHhc---CCHHHHHHHHHcCCCCCCC
Q 038432          406 IIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--------YTAGDLLCTAEKR---NDMSVMEELVKYGLNVDSK  474 (602)
Q Consensus       406 ~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--------~~g~t~L~~A~~~---~~~~~~~~Ll~~ga~~n~~  474 (602)
                      ..........++|+.|+..|+.+.++.+++.|++++.        ..|.||||+|+..   |+.+++++|+++|+++|.+
T Consensus       122 ~~~~~~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~  201 (278)
T 1dcq_A          122 KKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ  201 (278)
T ss_dssp             CCSSSHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCC
T ss_pred             ccccccchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcccc
Confidence            0000012234799999999999999999999998652        5799999999999   8999999999999999999


Q ss_pred             CCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432          475 DRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD  534 (602)
Q Consensus       475 d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~  534 (602)
                      |..|+||||+|+..|+.+++++|+++|||++.+|..|.||||+|+..++.++++.|...+
T Consensus       202 d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  261 (278)
T 1dcq_A          202 TGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQAL  261 (278)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999999999999988888776

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.86  E-value=9.5e-22  Score=157.68  Aligned_cols=93  Identities=35%  Similarity=0.497  Sum_probs=88.8

Q ss_pred             CCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHH
Q 038432          330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL  409 (602)
Q Consensus       330 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~  409 (602)
                      +|+||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|               
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d---------------   65 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD---------------   65 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC---------------
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC---------------
Confidence            47999999999999999999999999999999999999999999999999999999999999998               


Q ss_pred             hhccCCcHHHHHHHcCChhHHHHHHhcCCC
Q 038432          410 LDMNGNTALWEAISSKHHSIFRILYHCTAI  439 (602)
Q Consensus       410 ~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~  439 (602)
                        ..|.||||+|+..|+.+++++|+++|++
T Consensus        66 --~~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           66 --KNGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             --TTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             --CCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence              9999999999999999999999999875

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.86  E-value=4.6e-22  Score=166.52  Aligned_cols=106  Identities=22%  Similarity=0.255  Sum_probs=99.9

Q ss_pred             hhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHH
Q 038432          410 LDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMA  487 (602)
Q Consensus       410 ~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~  487 (602)
                      .|..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~   84 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK   84 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            358999999999999999999999999999887  789999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHCCCCcccCCCCCCChh
Q 038432          488 ENNVEMVNFLVMNGSDVVGANKCEFSST  515 (602)
Q Consensus       488 ~~~~~iv~~Ll~~ga~~~~~d~~g~t~l  515 (602)
                      .++.+++++|+++|+|++.++..|.||-
T Consensus        85 ~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           85 NGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             CCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            9999999999999999999999999984

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.84  E-value=2.3e-21  Score=162.20  Aligned_cols=105  Identities=29%  Similarity=0.366  Sum_probs=61.2

Q ss_pred             CCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCC
Q 038432          360 GDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAI  439 (602)
Q Consensus       360 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~  439 (602)
                      +|.+|+||||+||..|+.+++++|+++|++++..|                 ..|.||||+|+..|+.+++++|+++|++
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d-----------------~~g~t~L~~A~~~~~~~~~~~Ll~~g~~   67 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARS-----------------KDGNTPLHLAAKNGHAEIVKLLLAKGAD   67 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCC-----------------SSSCCTTHHHHTTTCHHHHHHHTTTTCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC-----------------CCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            45555555555555555555555555555555554                 5555555555555555555555555555


Q ss_pred             CCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCH
Q 038432          440 SDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTA  481 (602)
Q Consensus       440 ~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~Tp  481 (602)
                      ++.  ..|.||||+|+..|+.+++++|+++|+++|.++..|.||
T Consensus        68 ~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           68 VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             TTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             CcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            544  445566666666666666666666666666666666665

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}

Probab=99.79  E-value=1.3e-18  Score=154.82  Aligned_cols=142  Identities=23%  Similarity=0.307  Sum_probs=124.6

Q ss_pred             hHHHHhhCCHHHHHHHHHHhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEe
Q 038432          158 QHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDY  237 (602)
Q Consensus       158 ~~~~l~~lp~~l~~~v~~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~  237 (602)
                      .+++++.+|+++|.++..+++.++++++|+|++++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++. 
T Consensus         5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-   83 (160)
T 4f8a_A            5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ-   83 (160)
T ss_dssp             ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE-
T ss_pred             hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE-
Confidence            3568999999999999999999999999999999999999999999999999999999999999999999999999987 


Q ss_pred             ccCceeEEEEeCCCCeeehhhhhcC--CCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHH
Q 038432          238 EMEKEIAVGTLQTGDMFGEVGALCC--RPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNF  303 (602)
Q Consensus       238 ~~~~~~~~~~l~~g~~fGe~~ll~~--~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l  303 (602)
                         ++..+..+++|++||+.+++.+  .++..+++|.++|.++.+++++|.+++..+|.....+.+.+
T Consensus        84 ---~~~~~~~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l  148 (160)
T 4f8a_A           84 ---DDEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNL  148 (160)
T ss_dssp             ---TTEEEEEEETTCEEECCTTTCSSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred             ---CCEEEEEecCCCEeCcHHHhcCcccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence               2368889999999999999988  68899999999999999999999999999999887776654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.75  E-value=2.5e-18  Score=142.27  Aligned_cols=88  Identities=20%  Similarity=0.336  Sum_probs=63.5

Q ss_pred             CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHH
Q 038432          443 YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQ  522 (602)
Q Consensus       443 ~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~  522 (602)
                      .+|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+
T Consensus        22 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~  101 (110)
T 2zgd_A           22 SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNG  101 (110)
T ss_dssp             CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcC
Confidence            45666666666667777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHhhhcee
Q 038432          523 KREIGHRI  530 (602)
Q Consensus       523 ~~~~~~~l  530 (602)
                      +.++++.|
T Consensus       102 ~~~~~~~L  109 (110)
T 2zgd_A          102 NEDLAEIL  109 (110)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHh
Confidence            76666543

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.74  E-value=3.5e-18  Score=141.39  Aligned_cols=90  Identities=31%  Similarity=0.421  Sum_probs=85.8

Q ss_pred             CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhH
Q 038432          327 GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDI  406 (602)
Q Consensus       327 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~  406 (602)
                      .+.+|.||||.|+..|+.+++++|++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++..|            
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d------------   87 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD------------   87 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC------------
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc------------
Confidence            57789999999999999999999999999999999999999999999999999999999999999998            


Q ss_pred             HHHhhccCCcHHHHHHHcCChhHHHHH
Q 038432          407 IILLDMNGNTALWEAISSKHHSIFRIL  433 (602)
Q Consensus       407 ~~~~~~~g~tpLh~A~~~~~~~~~~~L  433 (602)
                           ..|.||||+|+..|+.+++++|
T Consensus        88 -----~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           88 -----KFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             -----TTSCCHHHHHHHHTCHHHHHHH
T ss_pred             -----cCCCcHHHHHHHcCCHHHHHHh
Confidence                 9999999999999999999987

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}

Probab=99.71  E-value=1.8e-16  Score=137.76  Aligned_cols=130  Identities=14%  Similarity=0.192  Sum_probs=115.8

Q ss_pred             HhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeE---EEEeCCCCee
Q 038432          179 LHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIA---VGTLQTGDMF  254 (602)
Q Consensus       179 ~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~---~~~l~~g~~f  254 (602)
                      .++++++|+|++++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++... ++++..   +..+.+|++|
T Consensus         5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f   84 (142)
T 3mdp_A            5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF   84 (142)
T ss_dssp             TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred             HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence            468899999999999999999999999999999999999999999999999999998644 345667   8999999999


Q ss_pred             ehhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhh
Q 038432          255 GEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHK  308 (602)
Q Consensus       255 Ge~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~  308 (602)
                      |+.+++.+.+++.+++|.++|+++.++++.|.+++..+|.....+++.+.....
T Consensus        85 G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~  138 (142)
T 3mdp_A           85 GVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVL  138 (142)
T ss_dssp             CGGGSSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             chHHHcCCCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999888888766544

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*

Probab=99.70  E-value=8.3e-17  Score=139.30  Aligned_cols=130  Identities=18%  Similarity=0.178  Sum_probs=116.5

Q ss_pred             hCCHHHHHHHHHHhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCcee
Q 038432          164 QLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEI  243 (602)
Q Consensus       164 ~lp~~l~~~v~~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~  243 (602)
                      ++|+.+|.+.......++++++++|++++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|++... +   .
T Consensus         7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~-g---~   82 (139)
T 3ocp_A            7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKE-G---V   82 (139)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEET-T---E
T ss_pred             cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEEC-C---E
Confidence            57788888888888899999999999999999999999999999999999999999999999999999999652 2   4


Q ss_pred             EEEEeCCCCeeehhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHH
Q 038432          244 AVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNV  297 (602)
Q Consensus       244 ~~~~l~~g~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~  297 (602)
                      .+..+.+|++||+.+++.+.++..+++|.++|.++.+++++|.+++..+|....
T Consensus        83 ~~~~~~~G~~fGe~~~l~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r  136 (139)
T 3ocp_A           83 KLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKH  136 (139)
T ss_dssp             EEEEECTTCEESCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHHTC------
T ss_pred             EEEEeCCCCEeccHHHHCCCCcceEEEECcceEEEEEcHHHHHHHHhhChHhhh
Confidence            788999999999999999999999999999999999999999999999997654

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*

Probab=99.69  E-value=9.2e-17  Score=142.88  Aligned_cols=125  Identities=18%  Similarity=0.257  Sum_probs=115.9

Q ss_pred             HHHHhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCC
Q 038432          173 ICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGD  252 (602)
Q Consensus       173 v~~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~  252 (602)
                      -......++++++|+|.+++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++...++++..+..+.+|+
T Consensus        31 ~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~~G~  110 (161)
T 3idb_B           31 DQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRG  110 (161)
T ss_dssp             HHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEEEEEEESCC
T ss_pred             HHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEEEEEcCCCC
Confidence            33445668999999999999999999999999999999999999999999999999999999986677888999999999


Q ss_pred             eeehhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHH
Q 038432          253 MFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNV  297 (602)
Q Consensus       253 ~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~  297 (602)
                      +||+.+++.+.++..+++|.+++.++.+++++|.+++..+|....
T Consensus       111 ~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~  155 (161)
T 3idb_B          111 SFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKR  155 (161)
T ss_dssp             EECGGGGTCCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSC
T ss_pred             EechHHHHcCCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHH
Confidence            999999999999999999999999999999999999999987543

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}

Probab=99.69  E-value=3.2e-16  Score=142.96  Aligned_cols=146  Identities=17%  Similarity=0.251  Sum_probs=127.0

Q ss_pred             hHHHHhhCCHHHH----HHHHHHhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEE
Q 038432          158 QHQLIEQLPKSIC----KSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVE  233 (602)
Q Consensus       158 ~~~~l~~lp~~l~----~~v~~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~  233 (602)
                      +..+++.++|.+-    .+.......++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+
T Consensus        13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~   92 (187)
T 3gyd_A           13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN   92 (187)
T ss_dssp             HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred             cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence            3445555555432    233445566889999999999999999999999999999999999999999999999999999


Q ss_pred             EEEec-cCceeEEEEeCCCCeeehhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHH
Q 038432          234 MIDYE-MEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNF  303 (602)
Q Consensus       234 i~~~~-~~~~~~~~~l~~g~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l  303 (602)
                      ++... ++++..+..+.+|++||+.+++.+.+++.+++|.++++++.++++.|.+++..+|.....+++.+
T Consensus        93 v~~~~~~g~~~~~~~~~~G~~fGe~~~l~~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l  163 (187)
T 3gyd_A           93 VIKDIPNKGIQTIAKVGAGAIIGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRL  163 (187)
T ss_dssp             EEEEETTTEEEEEEEEETTCEESHHHHHHCCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             EEEECCCCCeEEEEEccCCCeeeeHHHhCCCCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHHHH
Confidence            99754 55778899999999999999999999999999999999999999999999999999988887443

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}

Probab=99.68  E-value=6.4e-16  Score=135.36  Aligned_cols=132  Identities=17%  Similarity=0.250  Sum_probs=121.4

Q ss_pred             HhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehh
Q 038432          179 LHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEV  257 (602)
Q Consensus       179 ~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~  257 (602)
                      .++++++|+|..++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++... ++++..+..+.+|++||+.
T Consensus         4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~   83 (149)
T 2pqq_A            4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGEL   83 (149)
T ss_dssp             GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGG
T ss_pred             HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechH
Confidence            468899999999999999999999999999999999999999999999999999998754 4678889999999999999


Q ss_pred             hhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhhh
Q 038432          258 GALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKL  310 (602)
Q Consensus       258 ~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~~  310 (602)
                      +++.+.++..+++|.++|+++.+++++|.+++..+|.....+++.+..+....
T Consensus        84 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~  136 (149)
T 2pqq_A           84 SLFDPGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVARRLRKT  136 (149)
T ss_dssp             GGTSCEECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988887776655443

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}

Probab=99.66  E-value=1.3e-15  Score=134.28  Aligned_cols=131  Identities=18%  Similarity=0.232  Sum_probs=117.1

Q ss_pred             HhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehh
Q 038432          179 LHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEV  257 (602)
Q Consensus       179 ~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~  257 (602)
                      .++++++++|..++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++... ++++..+..+.+|++||+.
T Consensus        11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~   90 (154)
T 2z69_A           11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA   90 (154)
T ss_dssp             HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGG
T ss_pred             HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccH
Confidence            467899999999999999999999999999999999999999999999999999998654 3567789999999999999


Q ss_pred             hhhcCCC-ceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432          258 GALCCRP-QIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK  309 (602)
Q Consensus       258 ~ll~~~~-~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~  309 (602)
                      +++.+.+ +..+++|.++|+++.++++.|.+++..+|.....+++.+..+...
T Consensus        91 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~rl~~  143 (154)
T 2z69_A           91 MMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQ  143 (154)
T ss_dssp             GGGSSCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHTC
T ss_pred             hhccCCCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence            9999988 999999999999999999999999999999998888877665443

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A

Probab=99.64  E-value=2.1e-15  Score=130.24  Aligned_cols=125  Identities=22%  Similarity=0.311  Sum_probs=114.4

Q ss_pred             hHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehh
Q 038432          178 FLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEV  257 (602)
Q Consensus       178 ~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~  257 (602)
                      ..++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++...      ...+.+|++||+.
T Consensus         9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~------~~~~~~G~~~G~~   82 (138)
T 1vp6_A            9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN------PVELGPGAFFGEM   82 (138)
T ss_dssp             HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS------CEEECTTCEECHH
T ss_pred             HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC------cceECCCCEeeeh
Confidence            3467999999999999999999999999999999999999999999999999999998643      2478999999999


Q ss_pred             hhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhh
Q 038432          258 GALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHK  308 (602)
Q Consensus       258 ~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~  308 (602)
                      +++.+.++..+++|.++|+++.++++.|.+++..+|.....+.+.+.++..
T Consensus        83 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r~~  133 (138)
T 1vp6_A           83 ALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERRG  133 (138)
T ss_dssp             HHHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHCC
T ss_pred             HhccCCCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999888877666543

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}

Probab=99.63  E-value=5.2e-15  Score=138.44  Aligned_cols=128  Identities=16%  Similarity=0.239  Sum_probs=116.0

Q ss_pred             hhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEe-ccCceeEEEEeCCCCeeehhhhh
Q 038432          182 VEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDY-EMEKEIAVGTLQTGDMFGEVGAL  260 (602)
Q Consensus       182 l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~-~~~~~~~~~~l~~g~~fGe~~ll  260 (602)
                      |+++|+|.+++++.+..+...++.+.|++|++|+.+|++++.+|||.+|.|+++.. .++++..+..+++|++||+.+++
T Consensus         1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~   80 (216)
T 4ev0_A            1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL   80 (216)
T ss_dssp             ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred             CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhc
Confidence            46889999999999999999999999999999999999999999999999999975 45678899999999999999999


Q ss_pred             cCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432          261 CCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK  309 (602)
Q Consensus       261 ~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~  309 (602)
                      .+.+++.++.|.++++++.++++.|.+++..+|.....+.+.+..+...
T Consensus        81 ~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~  129 (216)
T 4ev0_A           81 DEGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARRLRE  129 (216)
T ss_dssp             HCCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988887776665443

>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}

Probab=99.62  E-value=6.2e-15  Score=135.41  Aligned_cols=130  Identities=11%  Similarity=0.049  Sum_probs=118.1

Q ss_pred             hHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEe-ccCceeEEEEeCCCCeeeh
Q 038432          178 FLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDY-EMEKEIAVGTLQTGDMFGE  256 (602)
Q Consensus       178 ~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~-~~~~~~~~~~l~~g~~fGe  256 (602)
                      ...++++++.|.+++++.+..+...++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++..+..+.+|++||+
T Consensus         5 ~~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge   84 (194)
T 3dn7_A            5 HTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSD   84 (194)
T ss_dssp             CHHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEee
Confidence            356788999999999999999999999999999999999999999999999999999975 4567889999999999998


Q ss_pred             h-hhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhh
Q 038432          257 V-GALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQH  307 (602)
Q Consensus       257 ~-~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~  307 (602)
                      . +++.+.+++.+++|.++++++.++++.|.+++..+|.....+.+.+..+.
T Consensus        85 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l  136 (194)
T 3dn7_A           85 YMAFQKQQPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQKSF  136 (194)
T ss_dssp             HHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred             hHHHhcCCCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            7 78889999999999999999999999999999999998877766655443

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*

Probab=99.61  E-value=8e-15  Score=139.32  Aligned_cols=133  Identities=17%  Similarity=0.257  Sum_probs=122.2

Q ss_pred             hhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEe-ccCceeEEEEeCCCCeee
Q 038432          177 LFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDY-EMEKEIAVGTLQTGDMFG  255 (602)
Q Consensus       177 ~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~-~~~~~~~~~~l~~g~~fG  255 (602)
                      ...++++++|+|..++++.+..+...++.+.|++|++|+.+|++++.+|||.+|.|+++.. .++++..+..+++|++||
T Consensus         8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G   87 (237)
T 3fx3_A            8 AQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFG   87 (237)
T ss_dssp             HHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEEC
T ss_pred             HHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEec
Confidence            3457899999999999999999999999999999999999999999999999999999975 456788999999999999


Q ss_pred             hhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432          256 EVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK  309 (602)
Q Consensus       256 e~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~  309 (602)
                      +.+++.+.+++.++.|.+++.++.++++.|.+++..+|.....+++.+..+...
T Consensus        88 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~  141 (237)
T 3fx3_A           88 EAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGHLHS  141 (237)
T ss_dssp             HHHHHHTCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHhcCCCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988887776665443

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}

Probab=99.61  E-value=6.8e-15  Score=139.24  Aligned_cols=131  Identities=15%  Similarity=0.206  Sum_probs=119.9

Q ss_pred             HhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehh
Q 038432          179 LHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEV  257 (602)
Q Consensus       179 ~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~  257 (602)
                      .++++++|+|.+++++.+..++..++.+.|++|++|+.+|++++.+|||.+|.|+++... ++++..+..+.+|++||+.
T Consensus         5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~   84 (231)
T 3e97_A            5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGET   84 (231)
T ss_dssp             HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTT
T ss_pred             HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeH
Confidence            467899999999999999999999999999999999999999999999999999999754 5578889999999999999


Q ss_pred             hhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432          258 GALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK  309 (602)
Q Consensus       258 ~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~  309 (602)
                      +++.+.+++.++.|.++++++.++++.|.+++..+|.....+++.+..+...
T Consensus        85 ~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~  136 (231)
T 3e97_A           85 AVLAHQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRVTF  136 (231)
T ss_dssp             TTTCCCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988888776665443

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*

Probab=99.61  E-value=6.4e-15  Score=129.80  Aligned_cols=117  Identities=20%  Similarity=0.253  Sum_probs=108.0

Q ss_pred             HhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeee
Q 038432          176 HLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG  255 (602)
Q Consensus       176 ~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fG  255 (602)
                      ....++++++|+|.+++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++.. +   ..+..+.+|++||
T Consensus        34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~-~---~~~~~~~~G~~fG  109 (154)
T 3pna_A           34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVN-N---EWATSVGEGGSFG  109 (154)
T ss_dssp             HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEET-T---EEEEEECTTCEEC
T ss_pred             HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEC-C---EEEEEecCCCEee
Confidence            34557899999999999999999999999999999999999999999999999999999972 2   4678899999999


Q ss_pred             hhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHH
Q 038432          256 EVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDN  296 (602)
Q Consensus       256 e~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~  296 (602)
                      +.+++.+.++..++.|.++|.++.++++.|.+++..++...
T Consensus       110 e~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~  150 (154)
T 3pna_A          110 ELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRK  150 (154)
T ss_dssp             CHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC
T ss_pred             ehHhhcCCCcceEEEECcceEEEEEeHHHHHHHHHhChHHH
Confidence            99999999999999999999999999999999999888654

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}

Probab=99.61  E-value=4.8e-15  Score=146.21  Aligned_cols=144  Identities=17%  Similarity=0.182  Sum_probs=128.3

Q ss_pred             HHHhhCCHHHHHHHHHHhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEecc
Q 038432          160 QLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEM  239 (602)
Q Consensus       160 ~~l~~lp~~l~~~v~~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~  239 (602)
                      ....++|+..|.+.......+.++++++|++++++.+..++..++.+.|++|++|+++||.++.+|||.+|.|++...+ 
T Consensus        19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~g-   97 (299)
T 3shr_A           19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEG-   97 (299)
T ss_dssp             ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEETT-
T ss_pred             cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEECC-
Confidence            3455789999999888999999999999999999999999999999999999999999999999999999999996522 


Q ss_pred             CceeEEEEeCCCCeeehhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhh
Q 038432          240 EKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQH  307 (602)
Q Consensus       240 ~~~~~~~~l~~g~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~  307 (602)
                         ..+..+.+|++||+.+++.+.++.++++|.++|.++.+++++|.+++...|.........++...
T Consensus        98 ---~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l~~~  162 (299)
T 3shr_A           98 ---VKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKSV  162 (299)
T ss_dssp             ---EEEEEECTTCEESCSGGGTTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             ---EEEEEeCCCCeeeHhHHhcCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHHhhC
Confidence               57889999999999999999999999999999999999999999999999877666555555443

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*

Probab=99.60  E-value=6.1e-15  Score=139.15  Aligned_cols=131  Identities=21%  Similarity=0.312  Sum_probs=120.3

Q ss_pred             HhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehh
Q 038432          179 LHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEV  257 (602)
Q Consensus       179 ~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~  257 (602)
                      .++++++|+|..++++.+..+...++.+.|++|++|+.+||+++.+|||.+|.|+++... ++++..+..+.+|++||+.
T Consensus         5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~   84 (227)
T 3d0s_A            5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL   84 (227)
T ss_dssp             HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCH
T ss_pred             HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeH
Confidence            457899999999999999999999999999999999999999999999999999999754 4678889999999999999


Q ss_pred             hhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432          258 GALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK  309 (602)
Q Consensus       258 ~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~  309 (602)
                      +++.+.+++.+++|.++|+++.++++.|.+++..+|.....+++.+..+...
T Consensus        85 ~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~  136 (227)
T 3d0s_A           85 SIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRR  136 (227)
T ss_dssp             HHHSCSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988887776655443

>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A

Probab=99.59  E-value=2.2e-15  Score=127.91  Aligned_cols=93  Identities=22%  Similarity=0.380  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHhhhHHHHHhhhhcCCC
Q 038432           56 RYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRL  135 (602)
Q Consensus        56 ~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~l  135 (602)
                      .|.+|+||+++|+|||||||++|.|..+++++++++++|+.+++++++.+.+.+........+.++..+..+...+..++
T Consensus        43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  122 (137)
T 4h33_A           43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDL  122 (137)
T ss_dssp             SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC--------------------
T ss_pred             CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            48899999999999999999999999999999999999999999999999988876554443333332222333344455


Q ss_pred             ChhHHHHHHHHHH
Q 038432          136 PPRLKKQILAYMC  148 (602)
Q Consensus       136 ~~~l~~ri~~y~~  148 (602)
                      +++....+++|++
T Consensus       123 ~~~~i~~l~~~l~  135 (137)
T 4h33_A          123 TKEEIAVVEQFLT  135 (137)
T ss_dssp             -------------
T ss_pred             cHHHHHHHHHHHh
Confidence            5665556666553

>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2

Probab=99.59  E-value=2.5e-14  Score=135.34  Aligned_cols=132  Identities=8%  Similarity=0.143  Sum_probs=120.5

Q ss_pred             hHhhhhhhcccccCCHHHHHHHHHh--ccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEe-ccCceeEEEEeCCCCee
Q 038432          178 FLHTVEKVYLFKDVSKEIIVLLVAK--MKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDY-EMEKEIAVGTLQTGDMF  254 (602)
Q Consensus       178 ~~~~l~~~~~f~~~s~~~l~~l~~~--~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~-~~~~~~~~~~l~~g~~f  254 (602)
                      ...++.++|+|..++++.+..++..  ++.+.|++|++|+++|+.++.+|||.+|.|+++.. .++++..+..+.+|++|
T Consensus        16 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~f   95 (232)
T 1zyb_A           16 MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLI   95 (232)
T ss_dssp             HHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEE
T ss_pred             HHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCee
Confidence            3467899999999999999999998  99999999999999999999999999999999864 45678899999999999


Q ss_pred             ehhhhhcCCC-ceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432          255 GEVGALCCRP-QIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK  309 (602)
Q Consensus       255 Ge~~ll~~~~-~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~  309 (602)
                      |+.+++.+.+ +..+++|.++++++.++++.|.+++..+|+....+++.+..+...
T Consensus        96 G~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~  151 (232)
T 1zyb_A           96 EPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQN  151 (232)
T ss_dssp             CGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHHHH
T ss_pred             eehHHhCCCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence            9999999988 899999999999999999999999999999988888776665443

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}

Probab=99.58  E-value=2.5e-14  Score=134.14  Aligned_cols=129  Identities=11%  Similarity=0.049  Sum_probs=117.5

Q ss_pred             hhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEe-ccCceeEEEEeCCCCe--eeh
Q 038432          180 HTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDY-EMEKEIAVGTLQTGDM--FGE  256 (602)
Q Consensus       180 ~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~-~~~~~~~~~~l~~g~~--fGe  256 (602)
                      ++++++|+|..++++.+..+...++.+.|++|++|+.+|+.++.+|||.+|.|+++.. .++++..+..+++|++  ||+
T Consensus         3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~   82 (220)
T 3dv8_A            3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSA   82 (220)
T ss_dssp             --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGG
T ss_pred             chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhH
Confidence            5789999999999999999999999999999999999999999999999999999975 4457888999999999  799


Q ss_pred             hhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhh
Q 038432          257 VGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHK  308 (602)
Q Consensus       257 ~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~  308 (602)
                      .+++.+.+++.++.|.++++++.++.+.|.+++..+|.....+++.+..+..
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~  134 (220)
T 3dv8_A           83 SCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRFS  134 (220)
T ss_dssp             GGGCTTCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998887776655543

>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2

Probab=99.58  E-value=2.8e-15  Score=129.24  Aligned_cols=116  Identities=15%  Similarity=0.235  Sum_probs=104.0

Q ss_pred             hhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEE--EeCCCCeeehh
Q 038432          180 HTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVG--TLQTGDMFGEV  257 (602)
Q Consensus       180 ~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~--~l~~g~~fGe~  257 (602)
                      ++++++|+|..++++.+..++..++.+.|++|++|+++||.++.+|||.+|.|++....++++..+.  .+.+|++||+.
T Consensus         6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~   85 (137)
T 1wgp_A            6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE   85 (137)
T ss_dssp             CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred             HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH
Confidence            5788999999999999999999999999999999999999999999999999997644555665555  99999999999


Q ss_pred             hh---hcCCC------ceeEEEEcceeEEEEeeHHHHHHHHHhChHH
Q 038432          258 GA---LCCRP------QIYTYRTKTLSQLLRLKTSALIEAMQSKQED  295 (602)
Q Consensus       258 ~l---l~~~~------~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~  295 (602)
                      ++   +.+.+      ++.+++|.++++++.+++++|.+++.++|..
T Consensus        86 ~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l  132 (137)
T 1wgp_A           86 LLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRS  132 (137)
T ss_dssp             HHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCC
T ss_pred             HHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhh
Confidence            85   77774      5789999999999999999999999888753

>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*

Probab=99.57  E-value=2.3e-14  Score=143.64  Aligned_cols=130  Identities=16%  Similarity=0.126  Sum_probs=119.8

Q ss_pred             hHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehh
Q 038432          178 FLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEV  257 (602)
Q Consensus       178 ~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~  257 (602)
                      ..++++++|+|+.++++.+..++..++.+.|++|++|+++||.++.+|||.+|.|+++....+....+..+.+|++||+.
T Consensus        11 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~G~~fGe~   90 (333)
T 4ava_A           11 RVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEI   90 (333)
T ss_dssp             CHHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCEEEEEECTTCEESHH
T ss_pred             hHHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEecCCCEeeHH
Confidence            34788999999999999999999999999999999999999999999999999999997655444489999999999999


Q ss_pred             hhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhh
Q 038432          258 GALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHK  308 (602)
Q Consensus       258 ~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~  308 (602)
                      +++.+.+++.+++|.+++.++.++++.|.+++ ++|.....+++.+.+...
T Consensus        91 ~l~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~~  140 (333)
T 4ava_A           91 ALLRDSPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRLA  140 (333)
T ss_dssp             HHHHTCBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHHH
T ss_pred             HhcCCCCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999 999999888887776655

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}

Probab=99.56  E-value=2.2e-14  Score=124.08  Aligned_cols=106  Identities=22%  Similarity=0.405  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCCchHHHHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHH
Q 038432           15 DIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFN   94 (602)
Q Consensus        15 ~l~~~H~~aC~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g   94 (602)
                      ++++.+++||++|....       .|               .|.+|+||+++|+||+||||+.|.|..+++++++++++|
T Consensus        33 ~~~~~~~~g~~~~~~~e-------~~---------------~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g   90 (148)
T 3vou_A           33 LTFLTLTSGTIFYSTVE-------GL---------------RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIG   90 (148)
T ss_dssp             HHHHHHHHHHHHHHHTS-------CC---------------CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhc-------CC---------------CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHH
Confidence            56666777777776431       12               488999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH------HHHh----hhHhHHHHhhhHHHHHhhhhcCCCChhHHHH
Q 038432           95 LGLTAYLIGNMTN------LVVE----GTRRTMEFRNSIEAASNFVGRNRLPPRLKKQ  142 (602)
Q Consensus        95 ~~~~~~~i~~i~~------~~~~----~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~r  142 (602)
                      +.+++++++.+..      +...    .+....+..++++.+++++++++.|++|+.|
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i~~~~~~~~~~~~L~~R  148 (148)
T 3vou_A           91 IGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAIEKKLAEHSRQGSLVPR  148 (148)
T ss_dssp             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC
Confidence            9999999999876      3322    2344455567788899999999999998765

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}

Probab=99.56  E-value=1.5e-14  Score=142.54  Aligned_cols=137  Identities=17%  Similarity=0.204  Sum_probs=125.8

Q ss_pred             HhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec--cCceeEEEEeCCCCe
Q 038432          176 HLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE--MEKEIAVGTLQTGDM  253 (602)
Q Consensus       176 ~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~--~~~~~~~~~l~~g~~  253 (602)
                      .....+++++|+|..++++.+..++..++.+.|.+|++|+++||.++.+|+|.+|.|+++...  ++++..+..+++|++
T Consensus       153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~  232 (299)
T 3shr_A          153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDW  232 (299)
T ss_dssp             HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCE
T ss_pred             HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCE
Confidence            455678899999999999999999999999999999999999999999999999999999765  557788999999999


Q ss_pred             eehhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhhhhc
Q 038432          254 FGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKD  312 (602)
Q Consensus       254 fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~~~~  312 (602)
                      ||+.+++.+.+++++++|.+++.++.+++++|.+++..+|+....+++.+..+......
T Consensus       233 fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r~~~~~~  291 (299)
T 3shr_A          233 FGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKAKYEAE  291 (299)
T ss_dssp             ECGGGGSSSEECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred             eChHHHhCCCCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhhhhcchh
Confidence            99999999999999999999999999999999999999999998888888777665543

>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2

Probab=99.55  E-value=4.4e-14  Score=133.70  Aligned_cols=127  Identities=12%  Similarity=0.124  Sum_probs=114.6

Q ss_pred             hhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehhhhhc
Q 038432          183 EKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEVGALC  261 (602)
Q Consensus       183 ~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~~ll~  261 (602)
                      .++|+|..++++.+..+...++.+.|++|++|+++|++++.+|||.+|.|+++... ++++..+..+.+|++||+.+++.
T Consensus        13 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~   92 (232)
T 2gau_A           13 LLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFA   92 (232)
T ss_dssp             GSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHH
T ss_pred             cccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhC
Confidence            46899999999999999999999999999999999999999999999999998643 45778899999999999999999


Q ss_pred             CCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432          262 CRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK  309 (602)
Q Consensus       262 ~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~  309 (602)
                      +.+++.++.|.++++++.++.+.|.+++..+|.....+++.+..+...
T Consensus        93 ~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~  140 (232)
T 2gau_A           93 EETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKELGY  140 (232)
T ss_dssp             TSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988888776665443

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}

Probab=99.55  E-value=2.3e-15  Score=129.21  Aligned_cols=124  Identities=15%  Similarity=0.126  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHhhHhhhhhhcccccCCHHHHHHHHHhccceecC-CCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEE
Q 038432          167 KSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIP-PREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAV  245 (602)
Q Consensus       167 ~~l~~~v~~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~-~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~  245 (602)
                      |+.|.+-......++++++++|..++++.+..++..++.+.|. +|++|+++|+.++.+|||.+|.|+++.. +++.   
T Consensus         3 p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~-~g~~---   78 (134)
T 2d93_A            3 SGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHP-DGKV---   78 (134)
T ss_dssp             CSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECS-SSCE---
T ss_pred             hhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcC-CCcE---
Confidence            3334333344555788999999999999999999999999999 9999999999999999999999999963 3333   


Q ss_pred             EEeCCCCeeehhhhhcCCCceeEE-EEcceeEEEEeeHHHHHHHHHhChH
Q 038432          246 GTLQTGDMFGEVGALCCRPQIYTY-RTKTLSQLLRLKTSALIEAMQSKQE  294 (602)
Q Consensus       246 ~~l~~g~~fGe~~ll~~~~~~~tv-~a~~~~~l~~l~~~~~~~~l~~~~~  294 (602)
                      ..+.+|++||+.+++.+.++..++ .|.+.+.++.++++.|.+++...++
T Consensus        79 ~~l~~G~~fG~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~  128 (134)
T 2d93_A           79 ENLFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVEK  128 (134)
T ss_dssp             EEECTTCEESCCSSSCCEECCSEEEESSSSEEEEEEEHHHHHHHSSCCSS
T ss_pred             EEecCCCccChhHhcCCCcceeEEEEEecceEEEEEeHHHHHHHHHHHHh
Confidence            568999999999999999888888 9999999999999999988876653

>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}

Probab=99.55  E-value=1.4e-14  Score=136.58  Aligned_cols=130  Identities=18%  Similarity=0.230  Sum_probs=119.4

Q ss_pred             HhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehh
Q 038432          179 LHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEV  257 (602)
Q Consensus       179 ~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~  257 (602)
                      .++++++|+|.+++++.+..+...++.+.|++|++|+.+|++++.+|||.+|.|+++... ++++..+..+++|++||+.
T Consensus         8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~   87 (227)
T 3dkw_A            8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA   87 (227)
T ss_dssp             HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESCT
T ss_pred             HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeH
Confidence            468899999999999999999999999999999999999999999999999999998643 4577889999999999999


Q ss_pred             hhhcCCC-ceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhh
Q 038432          258 GALCCRP-QIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHK  308 (602)
Q Consensus       258 ~ll~~~~-~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~  308 (602)
                      +++.+.+ +..++.|.+++.++.++++.|.+++..+|.....+++.+..+..
T Consensus        88 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~  139 (227)
T 3dkw_A           88 MMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLH  139 (227)
T ss_dssp             TTTTTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHHHH
T ss_pred             HhcCCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence            9999999 89999999999999999999999999999998887777665543

>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}

Probab=99.55  E-value=9.7e-14  Score=131.14  Aligned_cols=131  Identities=21%  Similarity=0.296  Sum_probs=108.3

Q ss_pred             HhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehh
Q 038432          179 LHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEV  257 (602)
Q Consensus       179 ~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~  257 (602)
                      ...+++.++|..++++.+..+...++.+.|++|++|+.+|++++.+|||.+|.|+++... ++++..+..+.+|++||+.
T Consensus        10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~   89 (230)
T 3iwz_A           10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEM   89 (230)
T ss_dssp             ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCG
T ss_pred             hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEeh
Confidence            457889999999999999999999999999999999999999999999999999999644 5678899999999999999


Q ss_pred             hhhcCC-CceeEEEEcceeEEEEeeHHHHHHHHHhC-----hHHHHHHHHHHHHhhhh
Q 038432          258 GALCCR-PQIYTYRTKTLSQLLRLKTSALIEAMQSK-----QEDNVSILKNFLQQHKK  309 (602)
Q Consensus       258 ~ll~~~-~~~~tv~a~~~~~l~~l~~~~~~~~l~~~-----~~~~~~il~~ll~~~~~  309 (602)
                      +++.+. +++.++.|.++++++.++.+.|.+++..+     |.....+++.+..+...
T Consensus        90 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~~l~~  147 (230)
T 3iwz_A           90 GLFIESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSKRLLD  147 (230)
T ss_dssp             GGTSCCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcCCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHH
Confidence            999875 78899999999999999999999999999     98888777766655433

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*

Probab=99.54  E-value=2.3e-14  Score=147.33  Aligned_cols=124  Identities=18%  Similarity=0.264  Sum_probs=115.4

Q ss_pred             HHHHhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCC
Q 038432          173 ICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGD  252 (602)
Q Consensus       173 v~~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~  252 (602)
                      -......+.++++++|++++++.+..++..++.+.|.+|++|+++||.++.+|||.+|.|+++...++++..+..+.+|+
T Consensus       138 ~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~v~~l~~G~  217 (416)
T 3tnp_B          138 DQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRG  217 (416)
T ss_dssp             HHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEEEEEEESCC
T ss_pred             HHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEEEEEecCCC
Confidence            34456678899999999999999999999999999999999999999999999999999999987677788999999999


Q ss_pred             eeehhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHH
Q 038432          253 MFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDN  296 (602)
Q Consensus       253 ~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~  296 (602)
                      +||+.+++.+.++.++++|.++|.++.++++.|.+++..++...
T Consensus       218 ~fGe~all~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~  261 (416)
T 3tnp_B          218 SFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKK  261 (416)
T ss_dssp             EECGGGGTSCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred             EEeeHHHhcCCCcccEEEEccCeEEEEEeehhhhhhhhcchhHH
Confidence            99999999999999999999999999999999999998887654

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*

Probab=99.51  E-value=1.9e-13  Score=134.12  Aligned_cols=129  Identities=19%  Similarity=0.270  Sum_probs=117.4

Q ss_pred             HhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeee
Q 038432          176 HLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG  255 (602)
Q Consensus       176 ~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fG  255 (602)
                      ....++++++|+|+.++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++. ++   ..+..+.+|++||
T Consensus        35 ~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~g---~~~~~l~~G~~fG  110 (291)
T 2qcs_B           35 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NN---EWATSVGEGGSFG  110 (291)
T ss_dssp             HHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE-TT---EEEEEECTTCEEC
T ss_pred             HHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE-CC---eEEEEcCCCCccc
Confidence            4556789999999999999999999999999999999999999999999999999999987 22   5788999999999


Q ss_pred             hhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhh
Q 038432          256 EVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHK  308 (602)
Q Consensus       256 e~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~  308 (602)
                      +.+++.+.++..+++|.+++.++.++++.|.+++..+|.........++.+..
T Consensus       111 e~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (291)
T 2qcs_B          111 ELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVS  163 (291)
T ss_dssp             GGGGTCCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTCG
T ss_pred             hHHHhcCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHhhch
Confidence            99999999999999999999999999999999999999888777766665443

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=99.51  E-value=6.9e-14  Score=133.63  Aligned_cols=126  Identities=16%  Similarity=0.298  Sum_probs=113.1

Q ss_pred             hHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehh
Q 038432          178 FLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEV  257 (602)
Q Consensus       178 ~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~  257 (602)
                      ..+.++++|+|++++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++..+    ..+..+++|++||+.
T Consensus         5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~~~----~~~~~~~~g~~fGe~   80 (246)
T 3of1_A            5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVND----NKVNSSGPGSSFGEL   80 (246)
T ss_dssp             HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEESTT----SCCEEECTTCEECHH
T ss_pred             HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEECC----EEEEecCCCCeeehh
Confidence            3568899999999999999999999999999999999999999999999999999998632    236889999999999


Q ss_pred             hhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhh
Q 038432          258 GALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQH  307 (602)
Q Consensus       258 ~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~  307 (602)
                      +++.+.+++++++|.+++.++.++++.|.+++..+|.........++...
T Consensus        81 ~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (246)
T 3of1_A           81 ALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLKSM  130 (246)
T ss_dssp             HHHHTCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHHHHC
T ss_pred             HHhcCCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999977666655555443

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*

Probab=99.50  E-value=3.2e-13  Score=132.52  Aligned_cols=128  Identities=17%  Similarity=0.319  Sum_probs=114.9

Q ss_pred             HhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEecc--CceeEEEEeCCCCe
Q 038432          176 HLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEM--EKEIAVGTLQTGDM  253 (602)
Q Consensus       176 ~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~--~~~~~~~~l~~g~~  253 (602)
                      .+...++.++++|..+++..+..++..++.+.|.+|++|+++|+.++.+|+|.+|.|++.....  +++..+..+++|++
T Consensus       153 ~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~  232 (291)
T 2qcs_B          153 KMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDY  232 (291)
T ss_dssp             HHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCE
T ss_pred             HHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCE
Confidence            4455778899999999999999999999999999999999999999999999999999986443  24578999999999


Q ss_pred             eehhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHH
Q 038432          254 FGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNF  303 (602)
Q Consensus       254 fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l  303 (602)
                      ||+.+++.+.+++++++|.+.++++.+++++|.+++..+|+.....+..+
T Consensus       233 fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~  282 (291)
T 2qcs_B          233 FGEIALLMNRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQY  282 (291)
T ss_dssp             ECSGGGTCCCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHH
T ss_pred             ecHHHHcCCCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998665555443

>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...

Probab=99.50  E-value=3.2e-13  Score=125.57  Aligned_cols=124  Identities=19%  Similarity=0.277  Sum_probs=109.3

Q ss_pred             cccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEe-ccCceeEEEEeCCCCeeehhhhhcCC-
Q 038432          186 YLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDY-EMEKEIAVGTLQTGDMFGEVGALCCR-  263 (602)
Q Consensus       186 ~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~-~~~~~~~~~~l~~g~~fGe~~ll~~~-  263 (602)
                      ++++.+|++.+..+...++.+.|++|++|+.+|+.++.+|||.+|.|+++.. .++++..+..+.+|++||+.+++.+. 
T Consensus         2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~   81 (210)
T 3ryp_A            2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ   81 (210)
T ss_dssp             -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTC
T ss_pred             cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCC
Confidence            4567799999999999999999999999999999999999999999999975 45678899999999999999999988 


Q ss_pred             CceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432          264 PQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK  309 (602)
Q Consensus       264 ~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~  309 (602)
                      ++..++.|.++++++.++.+.|.+++..+|+....+++.+..+...
T Consensus        82 ~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~  127 (210)
T 3ryp_A           82 ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQV  127 (210)
T ss_dssp             BCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999988887766655433

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=99.50  E-value=1.7e-13  Score=130.92  Aligned_cols=117  Identities=17%  Similarity=0.268  Sum_probs=108.4

Q ss_pred             hhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeeh
Q 038432          177 LFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGE  256 (602)
Q Consensus       177 ~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe  256 (602)
                      +...+++++++|..+++..+..++..++.+.|.+|++|+++|+.++.+|+|.+|.|+++....+   .+..+++|++||+
T Consensus       122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~---~~~~l~~g~~fGe  198 (246)
T 3of1_A          122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG---VINKLKDHDYFGE  198 (246)
T ss_dssp             HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE---EEEEEETTCEECH
T ss_pred             HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc---eEEEcCCCCcccH
Confidence            4456788999999999999999999999999999999999999999999999999999976542   7889999999999


Q ss_pred             hhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHH
Q 038432          257 VGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDN  296 (602)
Q Consensus       257 ~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~  296 (602)
                      .+++.+.++.++++|.+++.++.+++++|.+++...|+..
T Consensus       199 ~~~~~~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~  238 (246)
T 3of1_A          199 VALLNDLPRQATVTATKRTKVATLGKSGFQRLLGPAVDVL  238 (246)
T ss_dssp             HHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHH
T ss_pred             HHHhCCCCcccEEEECCCEEEEEEeHHHHHHHhccHHHHH
Confidence            9999999999999999999999999999999999887654

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1

Probab=99.49  E-value=5.2e-14  Score=121.53  Aligned_cols=63  Identities=27%  Similarity=0.445  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 038432           54 WIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRT  116 (602)
Q Consensus        54 ~~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~~~~~  116 (602)
                      +..|.+|+||+++|+||+||||+.|.|..+++++++++++|+.+++++++.+.+.+.+...+.
T Consensus        82 ~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~  144 (155)
T 2a9h_A           82 LISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQER  144 (155)
T ss_dssp             TTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC--
T ss_pred             cCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346899999999999999999999999999999999999999999999999999888765433

>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*

Probab=99.49  E-value=1.1e-13  Score=129.71  Aligned_cols=124  Identities=13%  Similarity=0.147  Sum_probs=112.9

Q ss_pred             HhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehhh
Q 038432          179 LHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVG  258 (602)
Q Consensus       179 ~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~~  258 (602)
                      +.+++++|+|..++++.+..+...++.+.|++|++|+.+||.++.+|||.+|.|+++...++++..+..+.+|++||+  
T Consensus         3 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~~G~--   80 (220)
T 2fmy_A            3 QMRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFCT--   80 (220)
T ss_dssp             TTCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEEEEEEETTCEEES--
T ss_pred             hhhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEeCC--
Confidence            357889999999999999999999999999999999999999999999999999997556678889999999999999  


Q ss_pred             hhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432          259 ALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK  309 (602)
Q Consensus       259 ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~  309 (602)
                           +++.++.|.++++++.++.+.|.+++..+|+....+++.+..+...
T Consensus        81 -----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~  126 (220)
T 2fmy_A           81 -----HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLLKN  126 (220)
T ss_dssp             -----CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHH
T ss_pred             -----ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence                 7889999999999999999999999999999988887776555433

>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2

Probab=99.48  E-value=7.9e-13  Score=122.60  Aligned_cols=119  Identities=18%  Similarity=0.290  Sum_probs=106.5

Q ss_pred             CCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehhhhhcCC----Cc
Q 038432          191 VSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEVGALCCR----PQ  265 (602)
Q Consensus       191 ~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~~ll~~~----~~  265 (602)
                      +|++.+..+...++.+.|++|++|+.+|+.++.+|||.+|.|+++... ++++..+..+.+|++||+.+++.+.    ++
T Consensus         1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~   80 (207)
T 2oz6_A            1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQER   80 (207)
T ss_dssp             CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBC
T ss_pred             CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCCc
Confidence            588999999999999999999999999999999999999999999754 4678899999999999999999988    78


Q ss_pred             eeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432          266 IYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK  309 (602)
Q Consensus       266 ~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~  309 (602)
                      +.++.|.++++++.++.+.|.+++..+|.....+++.+..+...
T Consensus        81 ~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~  124 (207)
T 2oz6_A           81 SAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRK  124 (207)
T ss_dssp             CSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888777766655433

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}

Probab=99.47  E-value=2e-13  Score=138.85  Aligned_cols=131  Identities=20%  Similarity=0.256  Sum_probs=118.5

Q ss_pred             HhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeee
Q 038432          176 HLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG  255 (602)
Q Consensus       176 ~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fG  255 (602)
                      ....+.++++++|++++++.+..++..++.+.|.+|++|+++||.++.+|+|.+|.|+++..    ...+..+.+|++||
T Consensus       126 ~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~~----~~~v~~l~~G~~fG  201 (381)
T 4din_B          126 TALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVN----GEWVTNISEGGSFG  201 (381)
T ss_dssp             HHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEET----TEEEEEEESSCCBC
T ss_pred             HHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEEC----CeEeeeCCCCCEEE
Confidence            44567899999999999999999999999999999999999999999999999999999962    24678899999999


Q ss_pred             hhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhhh
Q 038432          256 EVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKL  310 (602)
Q Consensus       256 e~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~~  310 (602)
                      +.+++.+.++.++++|.++|.++.++++.|.+++..+|......+..++.+....
T Consensus       202 e~all~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~~v~~f  256 (381)
T 4din_B          202 ELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSIL  256 (381)
T ss_dssp             GGGGTSCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCSTT
T ss_pred             chHHhcCCCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhhhhHHH
Confidence            9999999999999999999999999999999999999988877777666654433

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...

Probab=99.46  E-value=2.8e-13  Score=112.53  Aligned_cols=60  Identities=25%  Similarity=0.421  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 038432           55 IRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTR  114 (602)
Q Consensus        55 ~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~~~  114 (602)
                      ..|.+|+||+++|+||+||||+.|.|..+++++++++++|+.++++.++.+.+.+.+..+
T Consensus        60 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~  119 (122)
T 2ih3_C           60 ITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ  119 (122)
T ss_dssp             CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            358999999999999999999999999999999999999999999999999998877553

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}

Probab=99.46  E-value=1.8e-13  Score=117.11  Aligned_cols=58  Identities=28%  Similarity=0.469  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038432           56 RYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGT  113 (602)
Q Consensus        56 ~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~~  113 (602)
                      .|..|+||+++|+|||||||+.|.|..+++++++++++|+.+++++++.+...+.+..
T Consensus        40 ~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~   97 (139)
T 3eff_K           40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGRE   97 (139)
T ss_dssp             CHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHH
T ss_pred             CHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5889999999999999999999999999999999999999999999999988775543

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*

Probab=99.46  E-value=1.9e-13  Score=140.49  Aligned_cols=128  Identities=16%  Similarity=0.251  Sum_probs=111.0

Q ss_pred             HhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEecc-------CceeEEEEe
Q 038432          176 HLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEM-------EKEIAVGTL  248 (602)
Q Consensus       176 ~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~-------~~~~~~~~l  248 (602)
                      .++..+++++++|..+++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++....       +++..+..+
T Consensus       263 ~~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l  342 (416)
T 3tnp_B          263 KMYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARC  342 (416)
T ss_dssp             SSSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEE
T ss_pred             HHHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEe
Confidence            3455678999999999999999999999999999999999999999999999999999986543       567789999


Q ss_pred             CCCCeeehhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHH
Q 038432          249 QTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNF  303 (602)
Q Consensus       249 ~~g~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l  303 (602)
                      ++|++||+.+++.+.++.++++|.+.+.++.|+++.|.+++..+|+.....+..+
T Consensus       343 ~~G~~fGE~all~~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~~  397 (416)
T 3tnp_B          343 FRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATY  397 (416)
T ss_dssp             CTTCEESGGGGTCCSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC----
T ss_pred             CCCCEecHHHHhCCCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999987665544443

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}

Probab=99.45  E-value=3.4e-13  Score=137.15  Aligned_cols=129  Identities=20%  Similarity=0.334  Sum_probs=116.2

Q ss_pred             HHhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEecc--CceeEEEEeCCCC
Q 038432          175 QHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEM--EKEIAVGTLQTGD  252 (602)
Q Consensus       175 ~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~--~~~~~~~~l~~g~  252 (602)
                      ..++..+++++++|..+++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++....  ++...+..+++|+
T Consensus       243 ~~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd  322 (381)
T 4din_B          243 RKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSD  322 (381)
T ss_dssp             HHHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTC
T ss_pred             HHHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCC
Confidence            34566788999999999999999999999999999999999999999999999999999997542  2356799999999


Q ss_pred             eeehhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHH
Q 038432          253 MFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNF  303 (602)
Q Consensus       253 ~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l  303 (602)
                      +||+.+++.+.++.++++|.+.+.++.++++.|.+++..+|+.....+..+
T Consensus       323 ~fGe~all~~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~  373 (381)
T 4din_B          323 YFGEIALLLNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRY  373 (381)
T ss_dssp             EECTTGGGSCCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHH
T ss_pred             EechHHHhCCCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998766555443

>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}

Probab=99.44  E-value=1.3e-12  Score=125.64  Aligned_cols=121  Identities=19%  Similarity=0.290  Sum_probs=107.4

Q ss_pred             ccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEe-ccCceeEEEEeCCCCeeehhhhhcCC-Cce
Q 038432          189 KDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDY-EMEKEIAVGTLQTGDMFGEVGALCCR-PQI  266 (602)
Q Consensus       189 ~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~-~~~~~~~~~~l~~g~~fGe~~ll~~~-~~~  266 (602)
                      ..++++.+..+...++.+.|++|++|+.+|+.++.+|||.+|.|+++.. .++++..+..+.+|++||+.+++.+. +++
T Consensus        55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~~~~~  134 (260)
T 3kcc_A           55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS  134 (260)
T ss_dssp             ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBCC
T ss_pred             CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCCCCCc
Confidence            4589999999999999999999999999999999999999999999975 45678899999999999999999988 789


Q ss_pred             eEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432          267 YTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK  309 (602)
Q Consensus       267 ~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~  309 (602)
                      .+++|.++|.++.++++.|.+++..+|.....+++.+..+...
T Consensus       135 ~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~~l~~  177 (260)
T 3kcc_A          135 AWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQV  177 (260)
T ss_dssp             SEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHH
T ss_pred             eEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988877766655433

>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1

Probab=99.44  E-value=2.4e-13  Score=127.69  Aligned_cols=122  Identities=11%  Similarity=0.082  Sum_probs=110.2

Q ss_pred             hhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehhhhh
Q 038432          181 TVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGAL  260 (602)
Q Consensus       181 ~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~~ll  260 (602)
                      +++++|+|..++++.+..++..++.+.|++|++|+.+|++++.+|||.+|.|+++...++++..+..+.+|++||     
T Consensus         1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~fG-----   75 (222)
T 1ft9_A            1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFC-----   75 (222)
T ss_dssp             -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEE-----
T ss_pred             CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEec-----
Confidence            467889999999999999999999999999999999999999999999999999855566888999999999999     


Q ss_pred             cCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432          261 CCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK  309 (602)
Q Consensus       261 ~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~  309 (602)
                        .+++.++.|.++++++.++++.|.+++..+|.....+++.+..+...
T Consensus        76 --~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~  122 (222)
T 1ft9_A           76 --MHSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRALTS  122 (222)
T ss_dssp             --SCSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             --CCCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence              67889999999999999999999999999999888887776655433

>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2

Probab=99.42  E-value=9.1e-13  Score=122.76  Aligned_cols=125  Identities=13%  Similarity=0.122  Sum_probs=106.0

Q ss_pred             hcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEe-ccCceeEEEEeCCCCeeehhhhhcCC
Q 038432          185 VYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDY-EMEKEIAVGTLQTGDMFGEVGALCCR  263 (602)
Q Consensus       185 ~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~-~~~~~~~~~~l~~g~~fGe~~ll~~~  263 (602)
                      -|.|...++.....+...++.+.|++|++|+.+|+.++.+|||.+|.|+++.. .++++..+..+.+|++||+.+++.+.
T Consensus         4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~   83 (213)
T 1o5l_A            4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSE   83 (213)
T ss_dssp             ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSS
T ss_pred             cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcCC
Confidence            47788888999999999999999999999999999999999999999999875 45678899999999999999999876


Q ss_pred             -CceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432          264 -PQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK  309 (602)
Q Consensus       264 -~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~  309 (602)
                       ++..++.|.++++++.++++.|.+++..+|.....+++.+..+...
T Consensus        84 ~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~~~~  130 (213)
T 1o5l_A           84 PRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEHFRV  130 (213)
T ss_dssp             CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence             8899999999999999999999999999999988888776665443

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2

Probab=99.41  E-value=9.5e-13  Score=138.43  Aligned_cols=134  Identities=16%  Similarity=0.186  Sum_probs=120.5

Q ss_pred             CCHHHHHHHHHHhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccC---c
Q 038432          165 LPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEME---K  241 (602)
Q Consensus       165 lp~~l~~~v~~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~---~  241 (602)
                      .|+..|.+.......+.++++++|.+++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++....+   +
T Consensus        27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~  106 (469)
T 1o7f_A           27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD  106 (469)
T ss_dssp             SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGG
T ss_pred             CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCc
Confidence            4666677777777888999999999999999999999999999999999999999999999999999999975433   2


Q ss_pred             eeEEEEeCCCCeeehhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHH
Q 038432          242 EIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSI  299 (602)
Q Consensus       242 ~~~~~~l~~g~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~i  299 (602)
                      +..+..+++|++||+.+ +.+.+++++++|.++|.++.++++.|.+++..+|.....+
T Consensus       107 ~~~~~~~~~G~~fGe~~-l~~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l  163 (469)
T 1o7f_A          107 AVTICTLGIGTAFGESI-LDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGL  163 (469)
T ss_dssp             CEEEEEECTTCEECGGG-GGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTT
T ss_pred             ceEEEEccCCCCcchhh-hCCCCccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHH
Confidence            48899999999999999 9999999999999999999999999999999988755433

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=99.40  E-value=7.5e-13  Score=123.96  Aligned_cols=81  Identities=25%  Similarity=0.426  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCCchHHHHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHH
Q 038432           15 DIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFN   94 (602)
Q Consensus        15 ~l~~~H~~aC~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g   94 (602)
                      +++++|+.||++|++...   .++             +.+.+|..|+||+++|+||+||||+.|.|..+++++++++++|
T Consensus       140 ~~~~~~~~~~~~~~~e~~---~~~-------------~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G  203 (223)
T 1orq_C          140 VMLTVLYGAFAIYIVEYP---DPN-------------SSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTG  203 (223)
T ss_dssp             HHHHHHHHHHHHHHTTSS---STT-------------CSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhC---CcC-------------CCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHH
Confidence            566788999998876421   111             1233799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 038432           95 LGLTAYLIGNMTNLVVE  111 (602)
Q Consensus        95 ~~~~~~~i~~i~~~~~~  111 (602)
                      +.++++++|.+.+.+.+
T Consensus       204 ~~~~~~~i~~i~~~~~~  220 (223)
T 1orq_C          204 ISALTLLIGTVSNMFQK  220 (223)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999988765

>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A

Probab=99.39  E-value=1.9e-12  Score=123.80  Aligned_cols=127  Identities=12%  Similarity=0.054  Sum_probs=112.8

Q ss_pred             hhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEe-ccCceeEEEEeCCCCeeehhh
Q 038432          180 HTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDY-EMEKEIAVGTLQTGDMFGEVG  258 (602)
Q Consensus       180 ~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~-~~~~~~~~~~l~~g~~fGe~~  258 (602)
                      .++.++..|..+|++.+..+...++.+.|++|++|+.+|++++.+|||.+|.|+++.. .++++..+..+.+|++||+  
T Consensus         9 ~~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--   86 (250)
T 3e6c_C            9 DFCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--   86 (250)
T ss_dssp             CCCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--
T ss_pred             hhhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--
Confidence            3445555558899999999999999999999999999999999999999999999875 4567889999999999999  


Q ss_pred             hhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432          259 ALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK  309 (602)
Q Consensus       259 ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~  309 (602)
                      ++.+. ++.++.|.++++++.++.+.|.+++..+|+....+++.+..+...
T Consensus        87 ~l~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~  136 (250)
T 3e6c_C           87 LYPTG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAY  136 (250)
T ss_dssp             CSCCS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHHHH
T ss_pred             ecCCC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence            77777 999999999999999999999999999999988887776665444

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2

Probab=99.37  E-value=2.4e-12  Score=135.35  Aligned_cols=123  Identities=17%  Similarity=0.243  Sum_probs=108.0

Q ss_pred             HHhhHhhhhhhcccccCCHHHHHHHHHhccc-eecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCe
Q 038432          175 QHLFLHTVEKVYLFKDVSKEIIVLLVAKMKA-EYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDM  253 (602)
Q Consensus       175 ~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~-~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~  253 (602)
                      .....++++++++|.+++++.+..++..+.. +.|++|++|+++||.++.+|||.+|.|+++..+.   ..+..+.+|++
T Consensus       332 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~---~~~~~l~~G~~  408 (469)
T 1o7f_A          332 LEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK---GVVCTLHEGDD  408 (469)
T ss_dssp             HHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTT---EEEEEEETTCE
T ss_pred             HHHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCC---eeEEEecCCCE
Confidence            3445678999999999999999999999985 5899999999999999999999999999987433   47889999999


Q ss_pred             eehhhhhcCCCceeEEEEcc-eeEEEEeeHHHHHHHHHhChHHHHHHH
Q 038432          254 FGEVGALCCRPQIYTYRTKT-LSQLLRLKTSALIEAMQSKQEDNVSIL  300 (602)
Q Consensus       254 fGe~~ll~~~~~~~tv~a~~-~~~l~~l~~~~~~~~l~~~~~~~~~il  300 (602)
                      ||+.+++.+.++.++++|.+ +|+++.+++++|.+++..+|.....+.
T Consensus       409 fGe~~ll~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~  456 (469)
T 1o7f_A          409 FGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLK  456 (469)
T ss_dssp             ECGGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC-----
T ss_pred             EEEehhhcCCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHH
Confidence            99999999999999999998 799999999999999999997665543

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A

Probab=99.35  E-value=4.5e-12  Score=103.64  Aligned_cols=58  Identities=33%  Similarity=0.539  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038432           56 RYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGT  113 (602)
Q Consensus        56 ~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~~  113 (602)
                      .|.+|+||+++|+||+||||+.|.|..+++++++.+++|+.++++.++.+.+.+....
T Consensus        49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~  106 (114)
T 2q67_A           49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPS  106 (114)
T ss_dssp             CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred             CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999999999998775444

>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E

Probab=99.34  E-value=4.5e-12  Score=145.29  Aligned_cols=127  Identities=17%  Similarity=0.218  Sum_probs=112.3

Q ss_pred             HHHHHHHHhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec---cCceeEE
Q 038432          169 ICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE---MEKEIAV  245 (602)
Q Consensus       169 l~~~v~~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~---~~~~~~~  245 (602)
                      -|.+-..+.....|+.+++|+++++..+..|+..++.+.|++|++||++||.++.+|+|.+|.|+|+..+   .+.+..+
T Consensus        31 ~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v  110 (999)
T 4f7z_A           31 ERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTI  110 (999)
T ss_dssp             SCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCEEE
T ss_pred             cCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCceeE
Confidence            3433333455578899999999999999999999999999999999999999999999999999998643   2356789


Q ss_pred             EEeCCCCeeehhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHH
Q 038432          246 GTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDN  296 (602)
Q Consensus       246 ~~l~~g~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~  296 (602)
                      ..+.+|++||+ +++.+.||+++++|.++|+++++++.+|..++..+|+..
T Consensus       111 ~~l~~G~sFGE-all~n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~  160 (999)
T 4f7z_A          111 CTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYM  160 (999)
T ss_dssp             EEEETTCEECG-GGGGTCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred             EEecCCcchhh-hhccCCCcceEEEeccceEEEEEEHHHHHHHHHhChHHH
Confidence            99999999999 899999999999999999999999999999998887654

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A

Probab=99.30  E-value=5.3e-13  Score=107.39  Aligned_cols=84  Identities=21%  Similarity=0.182  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCCchHHHHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHH
Q 038432           15 DIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFN   94 (602)
Q Consensus        15 ~l~~~H~~aC~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g   94 (602)
                      +++++...+++|+++....   +             .+.+..|.+|+||+++|+||+||||+.|.+..+++++++++++|
T Consensus        15 ~~~~~~~~a~~~~~~E~~~---~-------------~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G   78 (103)
T 2k1e_A           15 LQKVLEEASKKAVEAERGA---P-------------GAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAG   78 (103)
T ss_dssp             HHHHHHHHHHHHHHHHTTS---T-------------TCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhccCC---C-------------CcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHH
Confidence            5556666788888765321   1             11123577999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhH
Q 038432           95 LGLTAYLIGNMTNLVVEGTR  114 (602)
Q Consensus        95 ~~~~~~~i~~i~~~~~~~~~  114 (602)
                      +.+++++++.+...+.+..+
T Consensus        79 ~~~~~~~~~~i~~~~~~~~~   98 (103)
T 2k1e_A           79 IEVFALVTAALATDFVRREE   98 (103)
T ss_dssp             HHHHHHTHHHHHTTGGGHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999987766543

>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A

Probab=99.30  E-value=3.9e-11  Score=113.76  Aligned_cols=119  Identities=11%  Similarity=0.123  Sum_probs=102.8

Q ss_pred             cCCHHHHHHHHH--hccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEe-ccCceeEEEEeCCCCeeehhhhhcCCCc-
Q 038432          190 DVSKEIIVLLVA--KMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDY-EMEKEIAVGTLQTGDMFGEVGALCCRPQ-  265 (602)
Q Consensus       190 ~~s~~~l~~l~~--~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~-~~~~~~~~~~l~~g~~fGe~~ll~~~~~-  265 (602)
                      +++++.+..+..  .++.+.|++|++|+.+||.++.+|||.+|.|+++.. .++++.++..+ +|++||+.+++.+.+. 
T Consensus         3 ~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~~~~   81 (238)
T 2bgc_A            3 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTETSV   81 (238)
T ss_dssp             -CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCCBS
T ss_pred             CCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCCCcC
Confidence            578888888885  589999999999999999999999999999999875 44577888888 9999999999998864 


Q ss_pred             -eeEEEEc-ceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432          266 -IYTYRTK-TLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK  309 (602)
Q Consensus       266 -~~tv~a~-~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~  309 (602)
                       ..++.+. +.++++.++++.|.+++..+|.....+++.+..+...
T Consensus        82 ~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~  127 (238)
T 2bgc_A           82 GYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSY  127 (238)
T ss_dssp             CCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             cceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence             6777777 5999999999999999999999988888776665443

>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*

Probab=99.29  E-value=4e-11  Score=114.03  Aligned_cols=116  Identities=17%  Similarity=0.291  Sum_probs=103.1

Q ss_pred             HHHHHHHHHhcc---ceecCCCCeEEccCCCCCeEEEEEEeEEEEEEe-ccCceeEEEEeCCCCeeehhhhhcCCCc--e
Q 038432          193 KEIIVLLVAKMK---AEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDY-EMEKEIAVGTLQTGDMFGEVGALCCRPQ--I  266 (602)
Q Consensus       193 ~~~l~~l~~~~~---~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~-~~~~~~~~~~l~~g~~fGe~~ll~~~~~--~  266 (602)
                      +++++.+.....   .+.|++|++|+.+|+.++.+|||.+|.|+++.. .++++..+..+.+|++||+.+++.+.+.  .
T Consensus        30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~~~  109 (243)
T 3la7_A           30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRF  109 (243)
T ss_dssp             HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSBCC
T ss_pred             HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCcce
Confidence            677788888888   999999999999999999999999999999864 4567889999999999999999998874  4


Q ss_pred             eEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhh
Q 038432          267 YTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHK  308 (602)
Q Consensus       267 ~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~  308 (602)
                      .+++|.++++++.++.+.|.+++..+|.....+++.+..+..
T Consensus       110 ~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~  151 (243)
T 3la7_A          110 YHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSRIL  151 (243)
T ss_dssp             EEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999998888776655543

>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}

Probab=99.29  E-value=1.1e-11  Score=134.62  Aligned_cols=127  Identities=17%  Similarity=0.230  Sum_probs=112.3

Q ss_pred             CHHHHHHHHHHhhHhhhhhhcccccCCHHHHHHHHHhcc-ceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeE
Q 038432          166 PKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMK-AEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIA  244 (602)
Q Consensus       166 p~~l~~~v~~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~-~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~  244 (602)
                      ++..|.+.......+.+.++++|.+++++.+..++..+. .+.|++|++|+++||.++.+|||.+|.|+++..+  + ..
T Consensus        18 ~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~g--~-~i   94 (694)
T 3cf6_E           18 PPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYG--K-GV   94 (694)
T ss_dssp             CGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEETT--T-EE
T ss_pred             ChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEeC--C-EE
Confidence            344444444445567899999999999999999999998 6899999999999999999999999999999753  2 58


Q ss_pred             EEEeCCCCeeehhhhhcCCCceeEEEEcc-eeEEEEeeHHHHHHHHHhChHH
Q 038432          245 VGTLQTGDMFGEVGALCCRPQIYTYRTKT-LSQLLRLKTSALIEAMQSKQED  295 (602)
Q Consensus       245 ~~~l~~g~~fGe~~ll~~~~~~~tv~a~~-~~~l~~l~~~~~~~~l~~~~~~  295 (602)
                      +..+.+|++||+.+++.+.+++++++|.+ .|+++.+++++|.+++..+|..
T Consensus        95 l~~l~~Gd~fGe~al~~~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l  146 (694)
T 3cf6_E           95 VCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEAN  146 (694)
T ss_dssp             EEEEETTCEECHHHHHHTCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCC
T ss_pred             EEEeCCCCEeehHHHhCCCCceEEEEEeeCceEEEEEeHHHHHHHHHHCHHH
Confidence            89999999999999999999999999999 5999999999999999998865

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A

Probab=99.27  E-value=3.8e-11  Score=94.95  Aligned_cols=56  Identities=38%  Similarity=0.633  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038432           56 RYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVE  111 (602)
Q Consensus        56 ~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~  111 (602)
                      .|.+|+||+++|+||+||||+.|.+..+++++++.+++|..+++++++.+...++.
T Consensus        32 ~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~   87 (97)
T 3ouf_A           32 RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL   87 (97)
T ss_dssp             CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred             CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            47899999999999999999999999999999999999999999999999876654

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A

Probab=99.25  E-value=4.6e-11  Score=91.30  Aligned_cols=54  Identities=24%  Similarity=0.592  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038432           56 RYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLV  109 (602)
Q Consensus        56 ~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~  109 (602)
                      .|.+|+||+++|+||+||||+.|.|..+++++++.+++|..++++.++.+.+.+
T Consensus        28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l   81 (82)
T 3ldc_A           28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL   81 (82)
T ss_dssp             CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999998764

>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E

Probab=99.23  E-value=8.2e-11  Score=134.90  Aligned_cols=114  Identities=18%  Similarity=0.230  Sum_probs=102.1

Q ss_pred             HhhHhhhhhhcccccCCHHHHHHHHHhccce-ecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCee
Q 038432          176 HLFLHTVEKVYLFKDVSKEIIVLLVAKMKAE-YIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMF  254 (602)
Q Consensus       176 ~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~-~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~f  254 (602)
                      +...+.+.++|.|.+++...+..|+..+... ++..|++|+++||.++++|||.+|.|+|+....   ..+..+++||+|
T Consensus       333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~---~~v~~L~~Gd~F  409 (999)
T 4f7z_A          333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK---GVVCTLHEGDDF  409 (999)
T ss_dssp             HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTT---EEEEEEETTCEE
T ss_pred             HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCC---cceEEecCCCcc
Confidence            4456789999999999999999999999864 567899999999999999999999999986433   568899999999


Q ss_pred             ehhhhhcCCCceeEEEEcce-eEEEEeeHHHHHHHHHhC
Q 038432          255 GEVGALCCRPQIYTYRTKTL-SQLLRLKTSALIEAMQSK  292 (602)
Q Consensus       255 Ge~~ll~~~~~~~tv~a~~~-~~l~~l~~~~~~~~l~~~  292 (602)
                      |+.+++.+.|+.+++++.++ |+++.+++++|.+++...
T Consensus       410 GElALL~~~PR~aTV~a~~d~c~fl~i~k~df~~il~~~  448 (999)
T 4f7z_A          410 GKLALVNDAPRAASIVLREDNCHFLRVDKEDGNRILRDV  448 (999)
T ss_dssp             CGGGGTCSCBCSSEEEESSSSEEEEEEEHHHHHHHHHHH
T ss_pred             cchhhccCCCeeEEEEEecCceEEEEeeHHHHHHHHhHH
Confidence            99999999999999999885 999999999999887643

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=99.19  E-value=1.5e-11  Score=128.61  Aligned_cols=84  Identities=19%  Similarity=0.184  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCCchHHHHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHH
Q 038432           15 DIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFN   94 (602)
Q Consensus        15 ~l~~~H~~aC~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g   94 (602)
                      +++.++++||++|++...   .             ..+.+..|..|+||+++||||+||||+.|.+..+++|+++++++|
T Consensus       350 l~i~~~if~~~~~~~e~~---~-------------~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G  413 (514)
T 2r9r_B          350 LFIGVILFSSAVYFAEAD---E-------------RDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAG  413 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTT---C-------------TTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhheeecc---C-------------CCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHH
Confidence            344566777777755211   1             122334688999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhH
Q 038432           95 LGLTAYLIGNMTNLVVEGTR  114 (602)
Q Consensus        95 ~~~~~~~i~~i~~~~~~~~~  114 (602)
                      +++++++++.+.+.+.....
T Consensus       414 ~~~l~l~iavI~~~f~~~~~  433 (514)
T 2r9r_B          414 VLTIALPVPVIVSNFNYFYH  433 (514)
T ss_dssp             HHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999987776654

>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A

Probab=99.12  E-value=3.5e-10  Score=103.52  Aligned_cols=95  Identities=22%  Similarity=0.320  Sum_probs=83.4

Q ss_pred             eecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehhhhhcCCCceeEEEEcceeEEEEeeHHH
Q 038432          206 EYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSA  284 (602)
Q Consensus       206 ~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~  284 (602)
                      +.|++|++|+++|++++.+|||.+|.|+++... ++++..+..+.+|++||+ +++.+.+++.++.|.++++++.++++.
T Consensus         2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~~~   80 (195)
T 3b02_A            2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQGLEPRA   80 (195)
T ss_dssp             EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEEEECGGG
T ss_pred             eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEEEECCcEEEEEEcHHH
Confidence            578999999999999999999999999998754 557888999999999999 999999999999999999999999999


Q ss_pred             HHHHHHhChHHHHHHHHHHHHhh
Q 038432          285 LIEAMQSKQEDNVSILKNFLQQH  307 (602)
Q Consensus       285 ~~~~l~~~~~~~~~il~~ll~~~  307 (602)
                      |.      |+....+++.+..+.
T Consensus        81 ~~------p~~~~~~~~~l~~~l   97 (195)
T 3b02_A           81 MD------HEALHRVARNLARQM   97 (195)
T ss_dssp             CC------HHHHHHHHHHHHHHH
T ss_pred             cC------HHHHHHHHHHHHHHH
Confidence            97      666666665555443

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A

Probab=99.07  E-value=5.3e-12  Score=111.25  Aligned_cols=61  Identities=28%  Similarity=0.484  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Q 038432           55 IRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRR  115 (602)
Q Consensus        55 ~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~~~~  115 (602)
                      ..|..|+||+++|+|||||||+.|.|..+++++++++++|+++++++++.+...+.+....
T Consensus        66 ~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~  126 (166)
T 3pjs_K           66 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQ  126 (166)
T ss_dssp             CSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHH
T ss_pred             CCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3578899999999999999999999999999999999999999999999999887765443

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*

Probab=99.01  E-value=8.3e-10  Score=106.40  Aligned_cols=57  Identities=19%  Similarity=0.307  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038432           55 IRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVE  111 (602)
Q Consensus        55 ~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~  111 (602)
                      ..|..|+||+++|+||+||||+.|.+..+++++++.+++|++++++++|.+...+..
T Consensus        81 ~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~  137 (301)
T 1xl4_A           81 GSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR  137 (301)
T ss_dssp             TCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            458899999999999999999999999999999999999999999999998876644

>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}

Probab=98.99  E-value=1.2e-09  Score=100.49  Aligned_cols=100  Identities=17%  Similarity=0.218  Sum_probs=82.3

Q ss_pred             HHHhccceecCCCCeEEccCCCC--CeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehhhhhcCCCceeEEEEccee
Q 038432          199 LVAKMKAEYIPPREDVIMQNEAP--DDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLS  275 (602)
Q Consensus       199 l~~~~~~~~~~~g~~i~~~g~~~--~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~~ll~~~~~~~tv~a~~~~  275 (602)
                      |...++.+.|++|++|+.+|+++  +.+|||.+|.|+++... ++++..+..+.+|++||+ +++.+.+++.++.|.+++
T Consensus         1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~   79 (202)
T 2zcw_A            1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERIYFAEAATDV   79 (202)
T ss_dssp             -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBCSEEEESSCE
T ss_pred             CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcceEEEEcccE
Confidence            34667889999999999999999  99999999999998654 567888999999999999 888899999999999999


Q ss_pred             EEEEeeHHHHHHHHHhChHHHHHHHHHHHHh
Q 038432          276 QLLRLKTSALIEAMQSKQEDNVSILKNFLQQ  306 (602)
Q Consensus       276 ~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~  306 (602)
                      .++.+ .+.|.      |+....+++.+..+
T Consensus        80 ~v~~i-~~~~~------p~~~~~~~~~l~~~  103 (202)
T 2zcw_A           80 RLEPL-PENPD------PELLKDLAQHLSQG  103 (202)
T ss_dssp             EEEEC-CSSCC------HHHHHHHHHHHHHH
T ss_pred             EEEEE-hHhcC------HHHHHHHHHHHHHH
Confidence            99999 88775      66555555554443

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}

Probab=98.95  E-value=1.9e-09  Score=104.70  Aligned_cols=58  Identities=21%  Similarity=0.358  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038432           56 RYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGT  113 (602)
Q Consensus        56 ~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~~  113 (602)
                      .|..|+||+++|+|||||||+.|.+..+++++++.+++|++++++++|.+...+....
T Consensus        78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~  135 (321)
T 2qks_A           78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPK  135 (321)
T ss_dssp             THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5889999999999999999999999999999999999999999999999998776654

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=98.91  E-value=3.4e-09  Score=101.40  Aligned_cols=57  Identities=28%  Similarity=0.473  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038432           56 RYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEG  112 (602)
Q Consensus        56 ~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~  112 (602)
                      .|..|+||+++|+|||||||+.|.|..+++|+++.+++|+.+++++++.+.+.+...
T Consensus       115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~  171 (309)
T 3um7_A          115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS  171 (309)
T ss_dssp             SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            699999999999999999999999999999999999999999999999999887654

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*

Probab=98.89  E-value=1.2e-09  Score=106.28  Aligned_cols=58  Identities=21%  Similarity=0.398  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038432           56 RYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGT  113 (602)
Q Consensus        56 ~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~~  113 (602)
                      .|..|+||+++|+||+||||+.|.+..+++++++.+++|++++++++|.+...+....
T Consensus        96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~  153 (333)
T 1p7b_A           96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPR  153 (333)
T ss_dssp             STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999998876654

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=98.79  E-value=1.4e-08  Score=108.80  Aligned_cols=80  Identities=16%  Similarity=0.436  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCCchHHHHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHH
Q 038432           15 DIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFN   94 (602)
Q Consensus        15 ~l~~~H~~aC~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g   94 (602)
                      +++++++.+|+|+++.....  +..|               .|+.|+||+++|+||+||||+.|.|..+++|+++++++|
T Consensus        27 ~~~~~~~~~~~~~~~~~~~e--~~~~---------------~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g   89 (565)
T 4gx0_A           27 LLVMLLAYASIFRYLMWHLE--GRAY---------------SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSG   89 (565)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--CCCC---------------CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhc--CCCC---------------chhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHH
Confidence            66667777888777653211  1112               367999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-HHHHHHh
Q 038432           95 LGLTAYLIGN-MTNLVVE  111 (602)
Q Consensus        95 ~~~~~~~i~~-i~~~~~~  111 (602)
                      ++++++.++. +..++..
T Consensus        90 ~~~~~~~~~~~~~~~~~~  107 (565)
T 4gx0_A           90 VIFLDIILPFGFVSMFLA  107 (565)
T ss_dssp             HHHHHTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            9999999998 5555443

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=98.68  E-value=3.1e-08  Score=94.79  Aligned_cols=58  Identities=28%  Similarity=0.456  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHhhcccCccccccchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038432           56 RYISAMYWSITTMTTVGYGDLHAVNTVEM------IFIIFYMLFNLGLTAYLIGNMTNLVVEGT  113 (602)
Q Consensus        56 ~Y~~s~ywa~~t~~tvGygd~~~~~~~e~------~~~~~~~~~g~~~~~~~i~~i~~~~~~~~  113 (602)
                      .|++|+||+++|+|||||||+.|.+..++      +++++++++|+.+++++++.+.+.+....
T Consensus       224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~  287 (309)
T 3um7_A          224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVS  287 (309)
T ss_dssp             CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred             CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999998886      59999999999999999999888776554

>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*

Probab=98.66  E-value=1.3e-07  Score=91.74  Aligned_cols=93  Identities=22%  Similarity=0.364  Sum_probs=68.4

Q ss_pred             HHHHHHH--HHHHHHHHhhcCCC----CCCccccccCCCCCCCchHHHHHHHHHHHHHHHhhcccCccccc--cchhHHH
Q 038432           15 DIILVHC--AGCLYYLLADRYPH----KGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAV--NTVEMIF   86 (602)
Q Consensus        15 ~l~~~H~--~aC~~~~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~Y~~s~ywa~~t~~tvGygd~~~~--~~~e~~~   86 (602)
                      +.+++.|  +|++||+++...++    .+..|.+-.       .....+..++||++.|+||+||||+.|.  +...+++
T Consensus        51 ~~y~~swl~Fa~ly~~ia~~~Gdl~~~~~~~~~~Cv-------~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l  123 (340)
T 3sya_A           51 MVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTPCV-------TNLNGFVSAFLFSIETETTIGYGYRVITDKCPEGIIL  123 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTTCSSCSSCCCSB-------SCCCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccccccccccccchh-------ccccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHH
Confidence            4455555  68899988743222    122333211       0123467899999999999999999996  6789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 038432           87 IIFYMLFNLGLTAYLIGNMTNLVVEGTR  114 (602)
Q Consensus        87 ~~~~~~~g~~~~~~~i~~i~~~~~~~~~  114 (602)
                      +.+.+++|+++.|+++|.+..-+....+
T Consensus       124 ~~~~~l~G~~l~a~~~giv~ak~srp~~  151 (340)
T 3sya_A          124 LLIQSVLGSIVNAFMVGCMFVKISQPKK  151 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence            9999999999999999999887766543

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=98.62  E-value=5.5e-08  Score=91.60  Aligned_cols=56  Identities=20%  Similarity=0.438  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038432           56 RYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVE  111 (602)
Q Consensus        56 ~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~  111 (602)
                      .|..|+||+++|+||+||||+.|.|..+++|+++.+++|+.+++++++.+...+..
T Consensus        93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~  148 (280)
T 3ukm_A           93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV  148 (280)
T ss_dssp             SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999998865543

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=98.59  E-value=4.6e-08  Score=92.12  Aligned_cols=58  Identities=19%  Similarity=0.336  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHhhcccCccccccch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038432           56 RYISAMYWSITTMTTVGYGDLHAVNTV-------EMIFIIFYMLFNLGLTAYLIGNMTNLVVEGT  113 (602)
Q Consensus        56 ~Y~~s~ywa~~t~~tvGygd~~~~~~~-------e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~~  113 (602)
                      .|++|+||+++|+|||||||+.|.+..       .++++++++++|..+++++++.+.++.....
T Consensus       201 s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~  265 (280)
T 3ukm_A          201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKK  265 (280)
T ss_dssp             CHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             chhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            378999999999999999999999885       4999999999999999999999987665543

>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*

Probab=98.52  E-value=3.7e-07  Score=88.58  Aligned_cols=92  Identities=20%  Similarity=0.309  Sum_probs=67.2

Q ss_pred             HHHHHHH--HHHHHHHHhhcCCC-----CCCccccccCCCCCCCchHHHHHHHHHHHHHHHhhcccCcccc--ccchhHH
Q 038432           15 DIILVHC--AGCLYYLLADRYPH-----KGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHA--VNTVEMI   85 (602)
Q Consensus        15 ~l~~~H~--~aC~~~~~~~~~~~-----~~~~w~~~~~~~~~~~~~~~~Y~~s~ywa~~t~~tvGygd~~~--~~~~e~~   85 (602)
                      +.+++.|  +|.+||+++...++     .++.|.+-.       .....+..++||++.|+||+||||+.|  .+...++
T Consensus        53 ~~y~~swl~Fally~~ia~~~gdl~~~~~~~~~~~Cv-------~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~  125 (343)
T 3spc_A           53 LAFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKPCV-------LQVNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVF  125 (343)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTGGGCTTCCSSCCCSE-------ETCCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCccccccccccccccc-------cccCCHHHHhheeeeeeEeecCCCccCCCCCHHHHH
Confidence            4444455  57888877644221     122343210       112468899999999999999999986  4888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038432           86 FIIFYMLFNLGLTAYLIGNMTNLVVEGT  113 (602)
Q Consensus        86 ~~~~~~~~g~~~~~~~i~~i~~~~~~~~  113 (602)
                      ++.+.+++|+++.|+++|.+..-+....
T Consensus       126 l~~~~~l~G~~l~a~~~giv~ak~srp~  153 (343)
T 3spc_A          126 MVVVQSIVGCIIDSFMIGAIMAKMARPK  153 (343)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            9999999999999999999987666544

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=98.33  E-value=3.5e-08  Score=98.35  Aligned_cols=57  Identities=23%  Similarity=0.609  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038432           56 RYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEG  112 (602)
Q Consensus        56 ~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~  112 (602)
                      .|..|+||+++|+||+||||+.|.|..+++|+++++++|+.+++++++.+...+...
T Consensus        45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~  101 (336)
T 1lnq_A           45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR  101 (336)
T ss_dssp             CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred             CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355799999999999999999999999999999999999999999999998766553

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=98.09  E-value=3.4e-06  Score=81.64  Aligned_cols=61  Identities=11%  Similarity=0.163  Sum_probs=49.9

Q ss_pred             hHHHHHHHHHHHHHHHhhcccC-ccc-cccchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038432           53 LWIRYISAMYWSITTMTTVGYG-DLH-AVNTVE----MIFIIFYMLFNLGLTAYLIGNMTNLVVEGT  113 (602)
Q Consensus        53 ~~~~Y~~s~ywa~~t~~tvGyg-d~~-~~~~~e----~~~~~~~~~~g~~~~~~~i~~i~~~~~~~~  113 (602)
                      .+..+..|+||++.++||+||| |+. |.+...    ..|..++++.|+++.+.+++.+.+-+....
T Consensus       177 ~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~  243 (285)
T 3rvy_A          177 WFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILN  243 (285)
T ss_dssp             HHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             ccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677899999999999999999 985 766544    788899999999999999999988766544

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}

Probab=93.53  E-value=0.24  Score=45.44  Aligned_cols=58  Identities=10%  Similarity=0.230  Sum_probs=38.6

Q ss_pred             hHHHHHHHHHHHHHHHhhcccCcccc----ccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038432           53 LWIRYISAMYWSITTMTTVGYGDLHA----VNTVE-MIFIIFYMLFNLGLTAYLIGNMTNLVV  110 (602)
Q Consensus        53 ~~~~Y~~s~ywa~~t~~tvGygd~~~----~~~~e-~~~~~~~~~~g~~~~~~~i~~i~~~~~  110 (602)
                      .+.....|++|...++|+.||+|+..    .+... ..|..++.+.+.++...+++.+.+-+.
T Consensus       162 ~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~  224 (229)
T 4dxw_A          162 RWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVI  224 (229)
T ss_dssp             TTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678899999999999999998621    11222 334445555666667777777665444

>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}

Probab=85.14  E-value=0.8  Score=50.94  Aligned_cols=98  Identities=11%  Similarity=0.222  Sum_probs=59.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCC-----CCCCchHHHHHHHHHHHHHHHhhcccCccccccchhH
Q 038432           10 DVRFCDIILVHCAGCLYYLLADRYPHKGETWLGSVNPN-----FTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEM   84 (602)
Q Consensus        10 ~i~~~~l~~~H~~aC~~~~~~~~~~~~~~~w~~~~~~~-----~~~~~~~~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~   84 (602)
                      .+++.+++++..++++++++....   +..|......+     ............++||++.+++..| ++..|.+...|
T Consensus       515 ~vW~~i~~~~~~~~~~l~~~~~~~---p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~p~~~~~R  590 (823)
T 3kg2_A          515 EIWMCIVFAYIGVSVVLFLVSRFS---PYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQG-ADISPRSLSGR  590 (823)
T ss_dssp             HHHHHHHHHHHHHHTTGGGTC--------------------------CHHHHHHHHHHHTTTTSCC-------CCCHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcC---hhhccCcccccccccccccccccccHHHHHHHHHHHHHhcC-CCcCCcchhhh
Confidence            345556666666666666554432   23444221100     0111223456789999999998888 78899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038432           85 IFIIFYMLFNLGLTAYLIGNMTNLVVE  111 (602)
Q Consensus        85 ~~~~~~~~~g~~~~~~~i~~i~~~~~~  111 (602)
                      ++.+++++++.++.+...+++..++..
T Consensus       591 ~~~~~w~~~~lil~~~Yta~L~s~Lt~  617 (823)
T 3kg2_A          591 IVGGVWWFFTLIIISSYTANLAAFLTV  617 (823)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	602
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-20
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-06
d1q3ea_	193	b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu	1e-16
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-15
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-04
d1lnqa2	80	f.14.1.1 (A:19-98) Potassium channel-related prote	2e-15
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-13
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-12
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-13
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-07
d1r3jc_	103	f.14.1.1 (C:) Potassium channel protein {Streptomy	8e-12
d1cx4a2	147	b.82.3.2 (A:266-412) Regulatory subunit of Protein	3e-11
d1p7ba2	116	f.14.1.1 (A:36-151) Inward rectifier potassium cha	9e-11
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.003
d1xl4a2	116	f.14.1.1 (A:23-138) Inward rectifier potassium cha	3e-10
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	5e-10
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	8e-09
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	9e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	7e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-07
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-04
d1o7fa3	124	b.82.3.2 (A:322-445) Regulatory domain of Epac2, d	6e-07
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-06
d1zyba2	147	b.82.3.2 (A:1-147) Probable transcription regulato	5e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.002
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	4e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.002
d2h8pc1	57	f.14.1.1 (C:22-78) Potassium channel protein {Stre	0.002

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.2 bits (225), Expect = 3e-20
 Identities = 40/214 (18%), Positives = 81/214 (37%), Gaps = 18/214 (8%)

Query: 335 LLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
           L   +  G+   +  LL+    P++ + K  TPLH+AA  GH E    LL++ + V+ + 
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 63

Query: 395 -------YIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGD 447
                  +       +  + +LL+ N N  L          I     H   +        
Sbjct: 64  KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEA 123

Query: 448 -----------LLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNF 496
                       L  A K   + V E L++   + ++  ++G T + +A+  NN+++V  
Sbjct: 124 SQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKL 183

Query: 497 LVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRI 530
           L+  G          ++  ++     + E+   +
Sbjct: 184 LLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 217

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (172), Expect = 1e-13
 Identities = 26/162 (16%), Positives = 55/162 (33%), Gaps = 18/162 (11%)

Query: 366 TPLHIAASKGHEECVLVLLKHASNVHLRDY------IIFMYNLSYDIIILL--------- 410
           TPLH+A+  GH   V  LL+  ++ ++ +        +       ++   L         
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 411 -DMNGNTALWEAISSKHHSIFRIL--YHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKY 467
              +  T L  A    H ++ ++L   +             L  A +   +  +  L++ 
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 121

Query: 468 GLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509
             +     + G T + +A     V +   L+   +    A K
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK 163

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (162), Expect = 2e-12
 Identities = 34/179 (18%), Positives = 62/179 (34%), Gaps = 19/179 (10%)

Query: 328 DPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHA 387
                  L   A  G     + LL+    P+     G TPLH+A    + + V +LL   
Sbjct: 129 TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG 188

Query: 388 SNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGD 447
            + H   +                 NG T L  A       + R L      ++  +   
Sbjct: 189 GSPHSPAW-----------------NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG 231

Query: 448 L--LCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
           +  L  A +     ++  L+    N +  ++ G T + +   E +V + + L+ +G  V
Sbjct: 232 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV 290

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (160), Expect = 4e-12
 Identities = 36/195 (18%), Positives = 70/195 (35%), Gaps = 18/195 (9%)

Query: 328 DPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHA 387
             N    L       N   +  LL     P      G TPLHIAA +   E    LL++ 
Sbjct: 162 GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 221

Query: 388 SNVHLRDY----------------IIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFR 431
            + +                    ++ +         L + +G T L       H  +  
Sbjct: 222 GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVAD 281

Query: 432 ILYHCTAISDPYTAGDL--LCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAEN 489
           +L     + D  T      L  A    ++ +++ L+++  +V++K + G + +  A  + 
Sbjct: 282 VLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQG 341

Query: 490 NVEMVNFLVMNGSDV 504
           + ++V  L+ NG+  
Sbjct: 342 HTDIVTLLLKNGASP 356

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 3e-08
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 17/77 (22%)

Query: 357 PDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNT 416
            +     G +PLH AA +GH + V +LLK+ ++ +                     +G T
Sbjct: 323 VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS-----------------DGTT 365

Query: 417 ALWEAISSKHHSIFRIL 433
            L  A    + S+  +L
Sbjct: 366 PLAIAKRLGYISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 335 LLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECV---LVLLKHASNVH 391
           L   A  G+   +  LLK    P+   S G TPL IA   G+        V+    S V 
Sbjct: 334 LHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVL 393

Query: 392 LRD 394
           + D
Sbjct: 394 VSD 396

>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.6 bits (187), Expect = 1e-16
 Identities = 31/187 (16%), Positives = 71/187 (37%), Gaps = 4/187 (2%)

Query: 115 RTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICKSIC 174
              +++   +    ++  ++LP   +++I  Y   R++ +  ++  ++ +L   + + I 
Sbjct: 3   SRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEIV 62

Query: 175 QHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEM 234
                  V  + LF +     +  ++ K+K E   P + +I +      +Y I  G V +
Sbjct: 63  NFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSV 122

Query: 235 IDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQE 294
               + K      L  G  FGE+  L    +  + R  T  +L  L      E ++    
Sbjct: 123 ----LTKGNKEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPM 178

Query: 295 DNVSILK 301
              +   
Sbjct: 179 MRRAFET 185

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.5 bits (184), Expect = 1e-15
 Identities = 46/259 (17%), Positives = 80/259 (30%), Gaps = 42/259 (16%)

Query: 293 QEDNVSILKNFLQQHKKLKDLNIGDLIAESG---EEDGDPNMSVNLLTVASTGNAAFLDE 349
             +    L+ FLQ+    +   +   +         +G  +          +      D 
Sbjct: 32  DNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDA 91

Query: 350 LLKARLDPDIG-DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDY------------- 395
               +L+ +I  D  G TPLH   S  + E V  L+KH SN    D              
Sbjct: 92  FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSV 151

Query: 396 -------IIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHC------------ 436
                     + +  Y  +IL D    T L   I +   +                    
Sbjct: 152 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK 211

Query: 437 ----TAISDPYTAGDLLCTAEKRNDMSVMEELVKY--GLNVDSKDRHGRTAIEIAMAENN 490
                                +R D  +    +K+     ++++D +G T + IA    N
Sbjct: 212 QNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGN 271

Query: 491 VEMVNFLVMNGSDVVGANK 509
           + +V+ L+  G+D   ANK
Sbjct: 272 ISIVDALLDYGADPFIANK 290

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.7 bits (130), Expect = 9e-09
 Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 2/107 (1%)

Query: 288 AMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFL 347
            + S      +  K +L              I     E        N     S      L
Sbjct: 185 IITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDL 244

Query: 348 DELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
             ++      +  DS G T L+IAA  G+   V  LL + ++  + +
Sbjct: 245 KWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIAN 289

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.0 bits (123), Expect = 9e-08
 Identities = 22/133 (16%), Positives = 45/133 (33%), Gaps = 9/133 (6%)

Query: 358 DIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTA 417
            + DS  RT LH               K+    +L   + ++       I        + 
Sbjct: 171 ILEDSMNRTILHHIIITSGMTGCSAAAKY----YLDILMGWIVKKQNRPIQSGTNEKESK 226

Query: 418 LWEAISSKHHSIFRILYHCTAISDPYTAGD-----LLCTAEKRNDMSVMEELVKYGLNVD 472
             +    +  SI   L     I++   A D      L  A +  ++S+++ L+ YG +  
Sbjct: 227 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF 286

Query: 473 SKDRHGRTAIEIA 485
             ++ G   ++  
Sbjct: 287 IANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.6 bits (91), Expect = 8e-04
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 448 LLCTAEKRNDMSVMEELVKYGLNVDSK-DRHGRTAIEIAMAENNVEMVNFLVMNGSDVVG 506
               +       V +      LN++   D HG T +    +  N+E+V  LV +GS+ + 
Sbjct: 76  QQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLY 135

Query: 507 ANKCEFS 513
            +    S
Sbjct: 136 GDNMGES 142

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

 Score = 69.3 bits (170), Expect = 2e-15
 Identities = 13/53 (24%), Positives = 26/53 (49%)

Query: 57  YISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLV 109
           +  ++YW+  T+ TVGYGD      + M F +  ++  +G  A  +  +   +
Sbjct: 28  WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFL 80

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.3 bits (163), Expect = 3e-13
 Identities = 30/151 (19%), Positives = 59/151 (39%), Gaps = 20/151 (13%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409
           LL      +  +  G TPLH AASK   E  ++LL+  +N   +D+              
Sbjct: 89  LLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH-------------- 134

Query: 410 LDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTA--GDLLCTAEKRNDMSVMEELVKY 467
                 TA+  A +  +  +  IL +  A ++         L  A     +   + LV  
Sbjct: 135 ---YEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQ 191

Query: 468 GLNVDSKDRHGRTAIEIAMAENNVEMVNFLV 498
           G ++  +++  +T +++A       ++  +V
Sbjct: 192 GASIYIENKEEKTPLQVA-KGGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (153), Expect = 6e-12
 Identities = 48/197 (24%), Positives = 78/197 (39%), Gaps = 19/197 (9%)

Query: 332 SVNLLTVASTGNAAFLDELLKA-RLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNV 390
           ++ +  +A +G    L E + A +      D   RT LH A S GH E V  LL+    V
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 391 HLRDYIIFMY------NLSYDIIILL----------DMNGNTALWEAISSKHHSIFRILY 434
           + +D   +            +I+  L          + NG T L  A S   H I  +L 
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 123

Query: 435 HCTAISDPYTAGDL--LCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVE 492
              A  D     +   +  A  + ++ ++  L+ Y  + + +D  G T + +A  E  VE
Sbjct: 124 EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVE 183

Query: 493 MVNFLVMNGSDVVGANK 509
               LV  G+ +   NK
Sbjct: 184 EAKLLVSQGASIYIENK 200

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 1/58 (1%)

Query: 328 DPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLK 385
           D   +  L              L+       I + + +TPL +A   G    +  +++
Sbjct: 166 DTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMVE 222

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.1 bits (165), Expect = 3e-13
 Identities = 27/151 (17%), Positives = 58/151 (38%), Gaps = 15/151 (9%)

Query: 357 PDIGDSKGRTPLHIAASKGHEECVLVLLKHA-SNVHLRDYIIFMYNLSYDIIILLDMNGN 415
            +     G T L  AA KGH E + +LL    ++V+  D +     +   +    D +  
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS--DDSDV 198

Query: 416 TALWEAISSKHHSI-FRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELV-KYGLNVDS 473
            A+   +      +  R     T           L  A ++  + +++ L+ +  + ++ 
Sbjct: 199 EAITHLLLDHGADVNVRGERGKTP----------LILAVEKKHLGLVQRLLEQEHIEIND 248

Query: 474 KDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
            D  G+TA+ +A+     ++   L   G+  
Sbjct: 249 TDSDGKTALLLAVELKLKKIAELLCKRGAST 279

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 2e-09
 Identities = 33/172 (19%), Positives = 64/172 (37%), Gaps = 7/172 (4%)

Query: 335 LLTVASTGNAAFLDELLKARLDPDIGDSK-GRTPLHIAASKGHEECVLVLLKHASNVHLR 393
           L+      +   + +LL+   + +  + + G TPLH A     E+ V +LL+H ++  LR
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68

Query: 394 DYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAE 453
                        ++         L   +S          Y  TA  +    G +     
Sbjct: 69  KKNGATPF-----LLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 454 KRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMN-GSDV 504
                + +    K   + +   + G TA+  A  + +VE++  L+   G+DV
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV 175

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 8e-09
 Identities = 35/152 (23%), Positives = 57/152 (37%), Gaps = 30/152 (19%)

Query: 283 SALIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTG 342
           +AL++A +    + + IL   L +     D+N  D         G   +   LL+   + 
Sbjct: 150 TALMDAAEKGHVEVLKIL---LDEMGA--DVNACD-------NMGRNALIHALLSSDDSD 197

Query: 343 NAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHAS-NVHLRDYIIFMYN 401
             A    LL    D ++   +G+TPL +A  K H   V  LL+     ++  D       
Sbjct: 198 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS------ 251

Query: 402 LSYDIIILLDMNGNTALWEAISSKHHSIFRIL 433
                      +G TAL  A+  K   I  +L
Sbjct: 252 -----------DGKTALLLAVELKLKKIAELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 4e-08
 Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 335 LLTVASTGNAAFLDELL-KARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLR 393
           L+      +   +  LL +  ++ +  DS G+T L +A     ++   +L K  ++    
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282

Query: 394 DYI 396
           D +
Sbjct: 283 DLV 285

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 5e-07
 Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 18/150 (12%)

Query: 363 KGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAI 422
           +    L  A      + V  LL+  +NV+ ++                +  G T L  A+
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE----------------EEGGWTPLHNAV 47

Query: 423 SSKHHSIFR--ILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRT 480
                 I    + +    +            A     + +++  +  G +V+  D +G T
Sbjct: 48  QMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFT 107

Query: 481 AIEIAMAENNVEMVNFLVMNGSDVVGANKC 510
           A   A     V+ + FL   G++V    K 
Sbjct: 108 AFMEAAVYGKVKALKFLYKRGANVNLRRKT 137

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 59.9 bits (145), Expect = 8e-12
 Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 15/100 (15%)

Query: 16  IILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGD 75
           +++V  AG    +LA+R         G+             Y  A++WS+ T TTVGYGD
Sbjct: 15  LVIVLLAGSYLAVLAER---------GAPGAQLI------TYPRALWWSVETATTVGYGD 59

Query: 76  LHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRR 115
           L+ V        +  M+  +     +   +    V   + 
Sbjct: 60  LYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQE 99

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.4 bits (143), Expect = 3e-11
 Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 8/145 (5%)

Query: 182 VEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMI------ 235
           +E +   K +     + +V  +  +     E +I Q ++ D  +I+ SGEV +       
Sbjct: 4   IESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMKRKGK 63

Query: 236 -DYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQE 294
            D E    + +     G  FGE+  +  +P+  +       + L +   A    +    E
Sbjct: 64  SDIEENGAVEIARCLRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCME 123

Query: 295 DNVSILKNFLQQHKKLKDLNIGDLI 319
                +  + +Q   L   N+ D++
Sbjct: 124 IMKRNIATYEEQLVALFGTNM-DIV 147

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

 Score = 57.3 bits (138), Expect = 9e-11
 Identities = 12/51 (23%), Positives = 22/51 (43%)

Query: 57  YISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTN 107
           ++ A ++S+ T+ TVGYGD+H             +   +   A   G +  
Sbjct: 62  FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFA 112

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 61.1 bits (147), Expect = 1e-10
 Identities = 36/295 (12%), Positives = 77/295 (26%), Gaps = 42/295 (14%)

Query: 286 IEAMQSKQEDNVSILKNFLQQHKKLK--------DLNIGDLIAESGEEDGDPNMSVNLLT 337
           +  M    ++ + I     +  ++++          N       S          V    
Sbjct: 37  LSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFV 96

Query: 338 VASTGNAAFLD---ELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
            A TG ++ LD    LL +     +  ++      +AA  GH   +  L + A    +  
Sbjct: 97  AAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM 156

Query: 395 YIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGD-----LL 449
                                 A   A  + H  +   L                     
Sbjct: 157 I---------------QAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFR 201

Query: 450 CTAEKRNDMSVMEELVKYGLNVDSKDRHGR-------TAIEIAMAENNVEMVNFLVMNGS 502
             A  R   +V+  L+   + +   + H                     EM +   ++  
Sbjct: 202 WAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNP 261

Query: 503 ----DVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNSTQNEVLLKKLEIIDFE 553
               D+V  ++C      L +++++ +      +    S      L     I  +
Sbjct: 262 DGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGD 316

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 44.1 bits (103), Expect = 3e-05
 Identities = 22/260 (8%), Positives = 58/260 (22%), Gaps = 58/260 (22%)

Query: 283 SALIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTG 342
                A  +     +  L   L   + +K +   +  A                  A  G
Sbjct: 92  VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQA--------------FRLAAENG 137

Query: 343 NAAFLDELLKARLDPDIGD--SKGRTPLHIAASKGHEECVLVLLKHASNV---------- 390
           +   L+ L +      +    ++      +AA  GH   +  L + A             
Sbjct: 138 HLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENY 197

Query: 391 --HLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAIS-------- 440
                  +   ++   + ++   +    A           +   +               
Sbjct: 198 YAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFK 257

Query: 441 -------------DPYTAGDLLCTAEKRNDMSVMEELVKY---------GLNVDSKDRHG 478
                             G  +     R +  V+ + +++              +     
Sbjct: 258 LSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDA 317

Query: 479 RTAIEIAMAENNVEMVNFLV 498
              + +A+   N      L+
Sbjct: 318 NELLRLALRLGNQGACALLL 337

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.9 bits (87), Expect = 0.003
 Identities = 11/73 (15%), Positives = 19/73 (26%), Gaps = 5/73 (6%)

Query: 319 IAESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIG-----DSKGRTPLHIAAS 373
           +    E      M  NL+          +  LL       +             L +A  
Sbjct: 267 LVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALR 326

Query: 374 KGHEECVLVLLKH 386
            G++    +LL  
Sbjct: 327 LGNQGACALLLSI 339

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

 Score = 55.4 bits (133), Expect = 3e-10
 Identities = 11/56 (19%), Positives = 22/56 (39%)

Query: 52  SLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTN 107
           +    +  A ++S+ TM T+GYG L  +  +    +    L  +   A     +  
Sbjct: 56  ARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYA 111

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.0 bits (133), Expect = 5e-10
 Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 17/149 (11%)

Query: 366 TPLHIAASKGHEECVLVLLKHASNV---------------HLRDYIIFMYNLSYDIIILL 410
             L  AA  G ++ V +L+ + +                 +       +   +       
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 411 DMNGNTALWEAISSKHHSIFRILYHCTA--ISDPYTAGDLLCTAEKRNDMSVMEELVKYG 468
                T L  A S  H +I  +L    A   +        L  A + N   V+E L+KYG
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 469 LNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
            +V ++ +  +TA +I++   N ++   L
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (90), Expect = 2e-04
 Identities = 6/28 (21%), Positives = 11/28 (39%)

Query: 356 DPDIGDSKGRTPLHIAASKGHEECVLVL 383
           D        +T   I+   G+E+   +L
Sbjct: 125 DVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 55.1 bits (131), Expect = 6e-09
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 17/76 (22%)

Query: 361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWE 420
           D  G+TP+ +AA +G  E V+ L++  ++V   D                    +TA   
Sbjct: 218 DEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDA-----------------TDHTARQL 260

Query: 421 AISSKHHSIFRILYHC 436
           A ++ HH+I  I   C
Sbjct: 261 AQANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 54.4 bits (129), Expect = 1e-08
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 411 DMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGD---LLCTAEKRNDMSVMEELVKY 467
              G TAL  A    +  I + L      +      D    +  A +   + V+  L++ 
Sbjct: 184 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ 243

Query: 468 GLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
           G +V++ D    TA ++A A N+  +V+  
Sbjct: 244 GASVEAVDATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.5 bits (119), Expect = 2e-07
 Identities = 9/58 (15%), Positives = 21/58 (36%)

Query: 328 DPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLK 385
           D +    ++  A  G    +  L++     +  D+   T   +A +  H   V +  +
Sbjct: 218 DEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 12/102 (11%)

Query: 336 LTVASTGNAAFLDELLKARLDPDIGDSK-GRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
           L   + G+ A  + + +     +I D +  RT LH  AS    E    L+ H +   +  
Sbjct: 6   LHTEAAGSYAITEPITRE--SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAA 63

Query: 395 YIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHC 436
                       +  +D + NT L  A+ ++   +   L   
Sbjct: 64  GA---------DVNAMDCDENTPLMLAVLARRRRLVAYLMKA 96

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 22/130 (16%), Positives = 44/130 (33%)

Query: 375 GHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILY 434
                ++ +L         + +      +  I+   +     A  + +  K   +     
Sbjct: 118 RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA 177

Query: 435 HCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMV 494
                        L   A+  N   V   + + G N D +D  G+T I +A  E  +E+V
Sbjct: 178 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVV 237

Query: 495 NFLVMNGSDV 504
            +L+  G+ V
Sbjct: 238 MYLIQQGASV 247

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 452 AEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSD 503
            E     ++ E + +  +N+    RH RT +    + ++ E    L+++ + 
Sbjct: 8   TEAAGSYAITEPITRESVNI-IDPRHNRTVLHWIASNSSAEKSEDLIVHEAK 58

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (125), Expect = 8e-09
 Identities = 26/154 (16%), Positives = 49/154 (31%), Gaps = 18/154 (11%)

Query: 366 TPLHIAASKGHEECVLVLLKHASNVHLRD------------------YIIFMYNLSYDII 407
             L  AA++G  E +  LL++  NV+ ++                    + +   + D+ 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 408 ILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKY 467
                        A                 I D      L   A++ +   V   +   
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 468 GLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNG 501
             NV  ++  G TA ++A      E+V+ +  NG
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 9e-05
 Identities = 7/29 (24%), Positives = 12/29 (41%)

Query: 358 DIGDSKGRTPLHIAASKGHEECVLVLLKH 386
              + KG T   +A   G  E V ++  +
Sbjct: 127 GHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.6 bits (127), Expect = 2e-08
 Identities = 24/216 (11%), Positives = 48/216 (22%), Gaps = 18/216 (8%)

Query: 361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWE 420
              G T LH+A    HE  +  LL  ++     D              L +  G TAL  
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLD--------------LQNDLGQTALHL 51

Query: 421 AISSKH--HSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHG 478
           A                   +         L  A +    +    L++   +        
Sbjct: 52  AAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDT 111

Query: 479 RTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNST 538
                     +         ++        +          +  +   GH          
Sbjct: 112 YLTQSQDCTPDTSHA--PAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHK 169

Query: 539 QNEVLLKKLEIIDFEAKEGKSKGGNCQRVSIYRGHP 574
             E++    +      K   + G     +++     
Sbjct: 170 DAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAA 205

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (126), Expect = 2e-08
 Identities = 22/162 (13%), Positives = 45/162 (27%)

Query: 342 GNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYN 401
                   LL+ R       S          +         +    +  +  +     + 
Sbjct: 89  RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWR 148

Query: 402 LSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVM 461
           L  +                  ++   + R         +P      L  A +    SV+
Sbjct: 149 LQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVL 208

Query: 462 EELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSD 503
           E L+K G +  ++   GRT +  A+   N  +   L  +G+ 
Sbjct: 209 ELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP 250

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 29/162 (17%), Positives = 53/162 (32%), Gaps = 6/162 (3%)

Query: 339 ASTGNAAFLDELLKARLDP---DIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDY 395
               +  FLD LL         D+ +  G+T LH+AA  G    V  L    + V + + 
Sbjct: 17  VIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAER 76

Query: 396 IIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKR 455
                      +          L +   S            +    P T+        + 
Sbjct: 77  GGHTALHLACRVRAHTC--ACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQP 134

Query: 456 NDMSVMEE-LVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNF 496
           N  +  E     + L +++++  G T + +A+   + EMV  
Sbjct: 135 NPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRL 176

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 51.7 bits (122), Expect = 4e-08
 Identities = 33/181 (18%), Positives = 65/181 (35%), Gaps = 15/181 (8%)

Query: 347 LDELLKARLDPDI-GDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYD 405
           + +LL    + +   D  G T LH+AA     +    LL   ++ + +D        +  
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA- 63

Query: 406 IIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELV 465
                          A +     I          +  +     L  A +     ++E+L+
Sbjct: 64  -------------VAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 110

Query: 466 KYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKRE 525
               ++++ D  G+TA+  A A NN E VN L+M+ ++    +  + +   L       E
Sbjct: 111 TADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYE 170

Query: 526 I 526
            
Sbjct: 171 A 171

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 48.2 bits (113), Expect = 7e-07
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 2/89 (2%)

Query: 411 DMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGD--LLCTAEKRNDMSVMEELVKYG 468
           D +G TAL  A +  +     IL    A  D     D   L  A +       + L+   
Sbjct: 120 DNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNF 179

Query: 469 LNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
            N +  D   R   ++A    + ++V  L
Sbjct: 180 ANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVL 383
           LL    + +I D   R P  +A+ + H + V +L
Sbjct: 175 LLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.1 bits (123), Expect = 4e-08
 Identities = 34/224 (15%), Positives = 58/224 (25%), Gaps = 62/224 (27%)

Query: 339 ASTGNAAFLDELLKAR-LDPDIGDSKGRTPLHIAASKGHEECVLVLLKH----------- 386
                   + ELL ++       D  GR PLH + S    E    LL             
Sbjct: 8   CMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPD 67

Query: 387 ---------------------------------ASNVHLRDYIIFMYNLSYDIIILL--- 410
                                             +N  +    + +    +++   L   
Sbjct: 68  DSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN 127

Query: 411 -------DMNGNTALWEAISSKHHSIFRILYH----CTAISDPYTAGDLLCTAEKRNDMS 459
                  D      L  A S     +  +L           D      L     + +  +
Sbjct: 128 GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDA 187

Query: 460 VMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSD 503
            +  + KYG   D  D  G  A ++A+   N ++  F + N  D
Sbjct: 188 AVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 3e-04
 Identities = 26/176 (14%), Positives = 53/176 (30%), Gaps = 25/176 (14%)

Query: 366 TPLHIAASKGHEECVLVLLK-HASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISS 424
            PLH A  +     V  LL    S +  +D                  +G   L  ++S 
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQ-----------------DGRIPLHWSVSF 44

Query: 425 KHHSIFRILY-------HCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRH 477
           + H I   L              D       +  +    ++           +++     
Sbjct: 45  QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ 104

Query: 478 GRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVH 533
           G T + +A+ +   E+  FL+ NG+ V   +K      +    +   ++   +   
Sbjct: 105 GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL 160

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 1e-07
 Identities = 19/153 (12%), Positives = 50/153 (32%), Gaps = 17/153 (11%)

Query: 363 KGRTPLHIAASKGHEECVLVLL-KHASNVHLRD----------------YIIFMYNLSYD 405
           +    L  AA++G  + V  LL +   +    +                  + +      
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGAS 60

Query: 406 IIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELV 465
             +      +     A +    ++  ++ H   ++ P   G L      +   + +   +
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 466 KYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLV 498
               ++  +D  G T +E+A+     ++V+ L 
Sbjct: 121 AAESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 6e-06
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 356 DPDIGDSKGRTPLHIAASKGHEECVLVLLKH 386
           D    D++G TPL +A  +G ++ V +L  H
Sbjct: 125 DLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.9 bits (120), Expect = 2e-07
 Identities = 42/266 (15%), Positives = 84/266 (31%), Gaps = 50/266 (18%)

Query: 289 MQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLD 348
           M   ++     LK ++     L+   +     +   +DG        L   S+G+   + 
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAV-----FLAACSSGDTEEVL 57

Query: 349 ELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFM--------- 399
            LL+   D +  +  G T LH A    + + V  L+++ +N++  D   ++         
Sbjct: 58  RLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG 117

Query: 400 -------YNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGD----- 447
                         +  ++  G+T L  A       + +   +   +       +     
Sbjct: 118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM 177

Query: 448 ------------------------LLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIE 483
                                    L  A  +    V++ L++   +V+ KD  G T + 
Sbjct: 178 LRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLH 237

Query: 484 IAMAENNVEMVNFLVMNGSDVVGANK 509
            A      E    LV N  D+   NK
Sbjct: 238 AAAHWGKEEACRILVENLCDMEAVNK 263

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.6 bits (114), Expect = 9e-07
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 17/94 (18%)

Query: 328 DPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHA 387
             +    L   A+ G    L  L++AR D +I D  G TPLH AA  G EE   +L+++ 
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255

Query: 388 SNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEA 421
            ++   +                   G TA   A
Sbjct: 256 CDMEAVNK-----------------VGQTAFDVA 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.4 bits (98), Expect = 8e-05
 Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 49/137 (35%)

Query: 361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWE 420
              G T LH+AA+KG+ E + +L++   +V+++DY                 +G T L  
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY-----------------DGWTPLHA 238

Query: 421 AISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRT 480
           A         RI                               LV+   ++++ ++ G+T
Sbjct: 239 AAHWGKEEACRI-------------------------------LVENLCDMEAVNKVGQT 267

Query: 481 AIEIAMAENNVEMVNFL 497
           A ++A  E+ +  +  L
Sbjct: 268 AFDVA-DEDILGYLEEL 283

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 3e-07
 Identities = 36/193 (18%), Positives = 75/193 (38%), Gaps = 27/193 (13%)

Query: 339 ASTGNAAFLDELLKARL----DPDIGDSKGRTPLHIAASKGHEECVLVLLKHAS------ 388
              GN   +  L+        + DI ++  +TPLH+A        V +L+   +      
Sbjct: 11  VVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALD 70

Query: 389 --------------NVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILY 434
                         +      ++         +   + +G TAL  A++++     ++L 
Sbjct: 71  RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLL 130

Query: 435 HCTAISDPYTAGD---LLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNV 491
              A  D          L  A + N +S+++ L+++G NV+++   G +A+  A     +
Sbjct: 131 ERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLL 190

Query: 492 EMVNFLVMNGSDV 504
            +V  LV +G+D 
Sbjct: 191 PLVRTLVRSGADS 203

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 4e-06
 Identities = 10/52 (19%), Positives = 23/52 (44%)

Query: 329 PNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECV 380
            + S  L + +  G    +  L+++  D  + +    TPL +A S+   + +
Sbjct: 175 YSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 4e-04
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 17/69 (24%)

Query: 363 KGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAI 422
            G + LH A+ +G    V  L++  ++  L++                  + +T L  A 
Sbjct: 176 SGSSALHSASGRGLLPLVRTLVRSGADSSLKNC-----------------HNDTPLMVAR 218

Query: 423 SSKHHSIFR 431
           S +   I R
Sbjct: 219 SRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 4e-04
 Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 21/84 (25%)

Query: 364 GRTPLHIAASKGHEECVLVLLK----HASNVHLRDYIIFMYNLSYDIIILLDMNGNTALW 419
           G TPLHIA  +G+   V  L+         + + +                     T L 
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN-----------------LRQTPLH 45

Query: 420 EAISSKHHSIFRILYHCTAISDPY 443
            A+ +   S+ R+L    A     
Sbjct: 46  LAVITTLPSVVRLLVTAGASPMAL 69

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 5e-07
 Identities = 30/194 (15%), Positives = 57/194 (29%), Gaps = 29/194 (14%)

Query: 339 ASTGNAAFLDELLKARL----DPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
                 A   E+++         +  ++  +TPLH+A      E    LL    +  LRD
Sbjct: 10  IIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRD 69

Query: 395 YIIFMYNLSYDIIILLDM----------------------NGNTALWEAISSKHHSIFRI 432
           +              L                        NG+T L  A    +  I  +
Sbjct: 70  FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVEL 129

Query: 433 LYHCTAISDPYTAGD---LLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAEN 489
           L    A  +     +    L  A    +  ++  L+K G +V+     G +  ++     
Sbjct: 130 LVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRP 189

Query: 490 NVEMVNFLVMNGSD 503
           +  +   L     +
Sbjct: 190 STRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 4e-04
 Identities = 17/150 (11%), Positives = 37/150 (24%), Gaps = 29/150 (19%)

Query: 364 GRTPLHIAASKGHEECVLVLLK----HASNVHLRDYIIFMYNLSYDIIILLDMNGNTALW 419
           G + LH+A     +   + +++      + ++ ++                     T L 
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN-----------------LQQTPLH 44

Query: 420 EAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRH-- 477
            A+ +    I   L       +                  +    V              
Sbjct: 45  LAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSIL 104

Query: 478 ------GRTAIEIAMAENNVEMVNFLVMNG 501
                 G T + +A     + +V  LV  G
Sbjct: 105 KATNYNGHTCLHLASIHGYLGIVELLVSLG 134

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.7 bits (110), Expect = 6e-07
 Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 5/114 (4%)

Query: 184 KVYLFKDVSKEIIVLLVAKMKAE-YIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKE 242
            +     +S  +   L   +  E +      +  Q E     YII+ G V ++ Y     
Sbjct: 14  HIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVV 73

Query: 243 IAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLS-QLLRLKTSALIEAMQSKQED 295
               TL  GD FG++  +   P+  +   +  +   LR+        ++  + +
Sbjct: 74  ---CTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEAN 124

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 18/136 (13%), Positives = 39/136 (28%), Gaps = 18/136 (13%)

Query: 366 TPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSK 425
             L  ++ +G  + V  ++    +  L +        +       ++      +    + 
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 426 HHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRH-GRTAIEI 484
             S      HC                   N++ V + LV+ G  V +      +TA + 
Sbjct: 63  ADSDGWTPLHCA---------------ASCNNVQVCKFLVESGAAVFAMTYSDMQTAADK 107

Query: 485 AMA--ENNVEMVNFLV 498
                E   +   FL 
Sbjct: 108 CEEMEEGYTQCSQFLY 123

>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 147

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable transcription regulator BT4300, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 44.2 bits (103), Expect = 5e-06
 Identities = 16/141 (11%), Positives = 48/141 (34%), Gaps = 9/141 (6%)

Query: 179 LHTVEKVYLFKDVSKEIIVLLVAKMKAEYI--PPREDVIMQNEAPDDVYIIVSGEVEMID 236
             T+ ++ LF+ +  E    ++ K+K  +I     E +I        +  ++ GE+ ++ 
Sbjct: 5   FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVT 64

Query: 237 YEME-KEIAVGTLQTGDMFGEVGALCC-RPQIYTYRTKTLSQLLRLKTSALIEAMQSKQE 294
              E     +  ++   +               +Y   T    + +  + ++  +     
Sbjct: 65  NAKENIYTVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFR--- 121

Query: 295 DNVSILKNFLQQ-HKKLKDLN 314
                  N++     + ++L 
Sbjct: 122 -YDIFRLNYMNIVSNRAQNLY 141

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 1e-05
 Identities = 20/132 (15%), Positives = 39/132 (29%), Gaps = 15/132 (11%)

Query: 366 TPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSK 425
             L  AA++G  E V  LL+  +N +  +           +                +  
Sbjct: 5   DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCA 64

Query: 426 HHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIA 485
             +      H  A         +L  A  R D+               +D  GR  +++A
Sbjct: 65  DPATLTRPVHDAAREGFLDTLVVLHRAGARLDV---------------RDAWGRLPVDLA 109

Query: 486 MAENNVEMVNFL 497
               + ++  +L
Sbjct: 110 EELGHRDVARYL 121

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (81), Expect = 0.002
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 357 PDIGDSKGRTPLHIAASKGHEECVLVLLKHA 387
            D+ D+ GR P+ +A   GH +    L   A
Sbjct: 95  LDVRDAWGRLPVDLAEELGHRDVARYLRAAA 125

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.3 bits (98), Expect = 3e-05
 Identities = 16/107 (14%), Positives = 32/107 (29%), Gaps = 19/107 (17%)

Query: 351 LKARLDPDIGDSKGRTPLHIAA---SKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDII 407
           L  ++    G     T LH+A     +     V  L++++ N+  +            + 
Sbjct: 32  LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLT 91

Query: 408 I----------------LLDMNGNTALWEAISSKHHSIFRILYHCTA 438
                            + + +G T L  A   KH     +L    +
Sbjct: 92  DNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS 138

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.9 bits (97), Expect = 4e-05
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 357 PDIGDSKGRTPLHIAASKGHEECVLVLLKH-ASNVHLRDYIIFMYNL 402
            +I +  G TPL IA    HE C  +L +  +   +   ++ + + L
Sbjct: 107 IEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVEYEWRL 153

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 19/150 (12%), Positives = 41/150 (27%), Gaps = 19/150 (12%)

Query: 362 SKGRTPLHI---AASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTAL 418
           +     LH    A        +L       ++  +             +        TAL
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKI-----------PLANGHEPDETAL 49

Query: 419 WEAISSKHHS---IFRILYHCTA--ISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDS 473
             A+ S   +   I   L   +             L      ++   ++ L++   +++ 
Sbjct: 50  HLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEI 109

Query: 474 KDRHGRTAIEIAMAENNVEMVNFLVMNGSD 503
            +  G T ++IA    +      L    S 
Sbjct: 110 ANESGETPLDIAKRLKHEHCEELLTQALSG 139

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 15/129 (11%), Positives = 31/129 (24%), Gaps = 15/129 (11%)

Query: 366 TPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSK 425
                A   G  + V   +    +V+                  L++     L  A  + 
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 63

Query: 426 HHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIA 485
                                           +S ++ L+  G +   K   G TA+E  
Sbjct: 64  PDKHHITPLLSA---------------VYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT 108

Query: 486 MAENNVEMV 494
             +    ++
Sbjct: 109 DNQAIKALL 117

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 57

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 34.4 bits (79), Expect = 0.002
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 60 AMYWSITTMTTVGY 73
          A++W+  T TTVGY
Sbjct: 44 ALWWACETATTVGY 57

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	602
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.98
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.98
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1q3ea_	193	HCN pacemaker channel {Mouse (Mus musculus) [TaxId	99.97
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.94
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.94
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.94
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.94
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.9
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.88
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.87
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.86
d1cx4a1	136	Regulatory subunit of Protein kinase A {Rat (Rattu	99.77
d1cx4a2	147	Regulatory subunit of Protein kinase A {Rat (Rattu	99.76
d1ne6a1	136	Regulatory subunit of Protein kinase A {Cow (Bos t	99.74
d1ne6a2	132	Regulatory subunit of Protein kinase A {Cow (Bos t	99.73
d1vp6a_	133	Putative ion channel CnbD {Mesorhizobium loti [Tax	99.73
d1o7fa2	155	Regulatory domain of Epac2, domains 1 and 3 {Mouse	99.7
d1o7fa3	124	Regulatory domain of Epac2, domains 1 and 3 {Mouse	99.7
d1zyba2	147	Probable transcription regulator BT4300, N-termina	99.7
d1wgpa_	137	Probable cyclic nucleotide-gated ion channel 6 {Th	99.69
d2gaua2	142	Transcriptional regulator PG0396, N-terminal domai	99.63
d1i5za2	132	Catabolite gene activator protein, N-terminal doma	99.55
d2oz6a2	134	Cyclic AMP receptor-like protein Vfr {Pseudomonas	99.54
d1ft9a2	132	CO-sensing protein CooA, N-terminal domain {Rhodos	99.52
d3e5ua2	139	Chlorophenol reduction protein CprK {Desulfitobact	99.5
d1o5la1	129	CRP-like transcriptional regulator TM1171, N-termi	99.47
d1r3jc_	103	Potassium channel protein {Streptomyces coelicolor	99.47
d2zcwa2	112	Transcriptional regulator TTHA1359, N-terminal dom	99.38
d1xl4a2	116	Inward rectifier potassium channel kirbac3.1 {Magn	99.34
d1p7ba2	116	Inward rectifier potassium channel Kirbac1.1 {Burk	99.21
d1lnqa2	80	Potassium channel-related protein MthK {Archaeon M	98.92
d2h8pc1	57	Potassium channel protein {Streptomyces coelicolor	97.72
d2bgca2	131	Listeriolysin regulatory protein PrfA, N-terminal	91.02

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-36  Score=290.69  Aligned_cols=193  Identities=20%  Similarity=0.238  Sum_probs=177.5

Q ss_pred             CCCCCchhhhHhhhcCcHHHHHHHHhcCCC---CCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccc
Q 038432          327 GDPNMSVNLLTVASTGNAAFLDELLKARLD---PDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLS  403 (602)
Q Consensus       327 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~---~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~  403 (602)
                      -+.+|.||||+||+.|+.+++++|++.|++   +|.+|..|+||||+||..|+.+++++|+++|++++..|         
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d---------   75 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE---------   75 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCC---------
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccc---------
Confidence            367899999999999999999999999988   66788999999999999999999999999999999998         


Q ss_pred             hhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCC-------------------------------------------
Q 038432          404 YDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAIS-------------------------------------------  440 (602)
Q Consensus       404 ~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~-------------------------------------------  440 (602)
                              ..|.||||+|+..++.+++++|++.+...                                           
T Consensus        76 --------~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (255)
T d1oy3d_          76 --------RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDW  147 (255)
T ss_dssp             --------TTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCG
T ss_pred             --------cccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhc
Confidence                    99999999999999999999998654311                                           


Q ss_pred             ----CC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCC-CCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCC
Q 038432          441 ----DP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDS-KDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFS  513 (602)
Q Consensus       441 ----~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~-~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t  513 (602)
                          +.  ..|.||||+|+..|+.+++++|+++|++.+. .+..|.||||+|+..|+.+++++|+++|+|++.+|..|+|
T Consensus       148 ~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t  227 (255)
T d1oy3d_         148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRT  227 (255)
T ss_dssp             GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CcccccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCC
Confidence                11  4688999999999999999999999999885 4678999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHhhhceeeeccCC
Q 038432          514 STNLNDMLQKREIGHRITVHDDN  536 (602)
Q Consensus       514 ~l~~a~~~~~~~~~~~l~~~~~~  536 (602)
                      |||+|+..++.++++.|+.+++.
T Consensus       228 ~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         228 PLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCC
Confidence            99999999999999999988853

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=278.95  Aligned_cols=188  Identities=27%  Similarity=0.335  Sum_probs=178.9

Q ss_pred             CCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchh
Q 038432          326 DGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYD  405 (602)
Q Consensus       326 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~  405 (602)
                      .+|.+|+||||+||..|+.++++++++.+.+....+..+.++++.|+..|+.+++++|+++|++++..|           
T Consensus        32 ~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d-----------  100 (223)
T d1uoha_          32 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVN-----------  100 (223)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-----------
T ss_pred             CcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCceeEeeC-----------
Confidence            478899999999999999999999999999999999999999999999999999999999999999998           


Q ss_pred             HHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHH
Q 038432          406 IIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIE  483 (602)
Q Consensus       406 ~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh  483 (602)
                            ..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..++.+++++|++.|+++|.+|.+|+||||
T Consensus       101 ------~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~  174 (223)
T d1uoha_         101 ------QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLH  174 (223)
T ss_dssp             ------TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHH
T ss_pred             ------CCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceec
Confidence                  9999999999999999999999999999887  78999999999999999999999999999999999999999


Q ss_pred             HHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceee
Q 038432          484 IAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRIT  531 (602)
Q Consensus       484 ~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~  531 (602)
                      +|+..|+.++|++|+++|||++.+|.+|+||||+|+ .++.++++.|+
T Consensus       175 ~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll  221 (223)
T d1uoha_         175 LACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMV  221 (223)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCC-TTHHHHHHHHH
T ss_pred             cccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-CCCHHHHhccc
Confidence            999999999999999999999999999999999985 57777776654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=6.6e-34  Score=276.55  Aligned_cols=205  Identities=22%  Similarity=0.299  Sum_probs=181.3

Q ss_pred             hhcccccccccccCCCCCC-CCCchhhhHhhhcCcHHHHHHH--------HhcCCCCCCCCCCCchHHHHHHhcCChHHH
Q 038432          310 LKDLNIGDLIAESGEEDGD-PNMSVNLLTVASTGNAAFLDEL--------LKARLDPDIGDSKGRTPLHIAASKGHEECV  380 (602)
Q Consensus       310 ~~~~~~~~~l~~~~~~~~~-~~g~t~L~~A~~~g~~~~~~~L--------l~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v  380 (602)
                      .+...+.+.+.+.+.+..+ .+|+||||+||..|+.++++.|        ++.|+|+|.+|.+|+||||+|+..|+.++|
T Consensus        11 ~~~~~~~~~l~~~~~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv   90 (277)
T d2fo1e1          11 AGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLV   90 (277)
T ss_dssp             HSSSCCCSCCSTTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             CCCHHHHHHHHhcCCCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccccc
Confidence            4667777778777777655 4699999999999999988776        567999999999999999999999999999


Q ss_pred             HHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCC----------------------
Q 038432          381 LVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTA----------------------  438 (602)
Q Consensus       381 ~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~----------------------  438 (602)
                      ++|+++|+|++.++                 ..|.||||+|+..++.++++.+...+.                      
T Consensus        91 ~~Ll~~Gad~n~~~-----------------~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (277)
T d2fo1e1          91 AYLMKAGADPTIYN-----------------KSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHN  153 (277)
T ss_dssp             HHHHHTTCCSCCCC-----------------TTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHS
T ss_pred             cccccccccccccc-----------------ccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhc
Confidence            99999999999998                 899999999999999988888864321                      


Q ss_pred             ---------------------------CCCCCCcchhHHHHHhcCCHHHHHHHH-HcCCCCCCCCCCCcCHHHHHHHcCc
Q 038432          439 ---------------------------ISDPYTAGDLLCTAEKRNDMSVMEELV-KYGLNVDSKDRHGRTAIEIAMAENN  490 (602)
Q Consensus       439 ---------------------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~ga~~n~~d~~g~TpLh~A~~~~~  490 (602)
                                                 +.....|.||||.++..++.+++++++ ..+.+++.+|..|+||||+|+..|+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~  233 (277)
T d2fo1e1         154 EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR  233 (277)
T ss_dssp             CSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCC
Confidence                                       001146789999999999999998755 6789999999999999999999999


Q ss_pred             HHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceee
Q 038432          491 VEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRIT  531 (602)
Q Consensus       491 ~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~  531 (602)
                      .++|++|+++|+|++.+|.+|+||||+|+..++.++++.|.
T Consensus       234 ~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~  274 (277)
T d2fo1e1         234 IEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD  274 (277)
T ss_dssp             HHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999998775

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-34  Score=267.97  Aligned_cols=188  Identities=22%  Similarity=0.262  Sum_probs=169.0

Q ss_pred             CCchhhhHhhhcCcHHH----HHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchh
Q 038432          330 NMSVNLLTVASTGNAAF----LDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYD  405 (602)
Q Consensus       330 ~g~t~L~~A~~~g~~~~----~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~  405 (602)
                      +|.||||+|+..|+.++    ++.+...|+++|.+|.+|+||||+||..|+.+++++|+++|+|++..|           
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d-----------   69 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRD-----------   69 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCC-----------
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccccccccc-----------
Confidence            58999999999999644    555666799999999999999999999999999999999999999998           


Q ss_pred             HHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--------CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCC-C
Q 038432          406 IIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--------YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKD-R  476 (602)
Q Consensus       406 ~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--------~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d-~  476 (602)
                            ..|.||||+|+..|+.++++.|++.+.+...        ..|.||||.|+..++.+++++|+..|++++..+ .
T Consensus        70 ------~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~  143 (221)
T d1iknd_          70 ------FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPC  143 (221)
T ss_dssp             ------TTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT
T ss_pred             ------cccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCccccccccc
Confidence                  9999999999999999999999998765433        568899999999999999999999999998776 5


Q ss_pred             CCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432          477 HGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD  534 (602)
Q Consensus       477 ~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~  534 (602)
                      +|.||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|+..++.++++.+....
T Consensus       144 ~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~  201 (221)
T d1iknd_         144 NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT  201 (221)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTS
T ss_pred             CCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            7999999999999999999999999999999999999999999998888888776654

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.1e-33  Score=265.83  Aligned_cols=201  Identities=20%  Similarity=0.157  Sum_probs=166.8

Q ss_pred             HHHhhhhhhcccccccccccCC-----CCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCCh
Q 038432          303 FLQQHKKLKDLNIGDLIAESGE-----EDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHE  377 (602)
Q Consensus       303 ll~~~~~~~~~~~~~~l~~~~~-----~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~  377 (602)
                      .++.+...+..+..++|++.++     +.++.+|.||||+||..|+.++++.|++.|++++.+|.+|.||||+|+..|+.
T Consensus        12 ~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~   91 (255)
T d1oy3d_          12 ALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAH   91 (255)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhccCch
Confidence            4455556666666666665543     34678899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCCchh--hH----------------------------HHHhccchhHHHHhhccCCcHHHHHHHcCCh
Q 038432          378 ECVLVLLKHASNVHLRD--YI----------------------------IFMYNLSYDIIILLDMNGNTALWEAISSKHH  427 (602)
Q Consensus       378 ~~v~~Ll~~g~~~~~~~--~~----------------------------~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~  427 (602)
                      +++++|++.+.......  ..                            ..........++..|..|.||||+|+..|+.
T Consensus        92 ~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~  171 (255)
T d1oy3d_          92 TCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDA  171 (255)
T ss_dssp             HHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccccccccccc
Confidence            99999998754432211  00                            0000011111234578899999999999999


Q ss_pred             hHHHHHHhcCCCCCC---CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCC
Q 038432          428 SIFRILYHCTAISDP---YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSD  503 (602)
Q Consensus       428 ~~~~~Ll~~g~~~~~---~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~  503 (602)
                      +++++|++++++.+.   ..|.||||+|+..|+.+++++|+++|+|+|.+|.+|+||||+|+..++.+++++|+++||+
T Consensus       172 ~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         172 EMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             ccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            999999999998875   6799999999999999999999999999999999999999999999999999999999997

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-32  Score=281.21  Aligned_cols=228  Identities=18%  Similarity=0.244  Sum_probs=187.8

Q ss_pred             HHhhhhhhcccccccccccCCCC--CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHH
Q 038432          304 LQQHKKLKDLNIGDLIAESGEED--GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVL  381 (602)
Q Consensus       304 l~~~~~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~  381 (602)
                      ++.+...++.+.++.|++.++++  .+.+|.||||+||..|+.+++++|+++|+++|.+|.+|+||||+|+..|+.++++
T Consensus         4 L~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~~~~   83 (408)
T d1n11a_           4 LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVK   83 (408)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            55677778888888888888644  7888999999999999999999999999999999999999999998887776666


Q ss_pred             HHHhc------------------------------------------------------------------ccCCCchh-
Q 038432          382 VLLKH------------------------------------------------------------------ASNVHLRD-  394 (602)
Q Consensus       382 ~Ll~~------------------------------------------------------------------g~~~~~~~-  394 (602)
                      +|+..                                                                  |++++..+ 
T Consensus        84 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~  163 (408)
T d1n11a_          84 LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK  163 (408)
T ss_dssp             HHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCS
T ss_pred             HHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCC
Confidence            55543                                                                  33333221 


Q ss_pred             -----hHHHHhccchhH---------------------------------------------------------------
Q 038432          395 -----YIIFMYNLSYDI---------------------------------------------------------------  406 (602)
Q Consensus       395 -----~~~~~~~~~~~~---------------------------------------------------------------  406 (602)
                           ...+...++.++                                                               
T Consensus       164 ~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~  243 (408)
T d1n11a_         164 NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGH  243 (408)
T ss_dssp             SCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             cCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCc
Confidence                 000001111111                                                               


Q ss_pred             ---HH----------HhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCC
Q 038432          407 ---II----------LLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNV  471 (602)
Q Consensus       407 ---~~----------~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~  471 (602)
                         +.          ..+..|.|||+.|+..++.+++++|+++|++++.  ..+.||||.++..++.+++++++++|+++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~i  323 (408)
T d1n11a_         244 AEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV  323 (408)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCT
T ss_pred             HhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccccccc
Confidence               00          1155677888888999999999999999998887  67889999999999999999999999999


Q ss_pred             CCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceee
Q 038432          472 DSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRIT  531 (602)
Q Consensus       472 n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~  531 (602)
                      |.+|.+|+||||+|++.|+.++|++|+++|||++.+|.+|+||||+|+..|+.+++++|.
T Consensus       324 n~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~  383 (408)
T d1n11a_         324 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK  383 (408)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999888763

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=2.3e-32  Score=257.65  Aligned_cols=199  Identities=21%  Similarity=0.173  Sum_probs=159.8

Q ss_pred             hhhhHhhhcCcHHHHHHHHhc-CCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchh---------hHHHHhcc
Q 038432          333 VNLLTVASTGNAAFLDELLKA-RLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD---------YIIFMYNL  402 (602)
Q Consensus       333 t~L~~A~~~g~~~~~~~Ll~~-g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~---------~~~~~~~~  402 (602)
                      +|||+||..|+.+.++.|++. +.+++.+|.+|+||||+|+..|+.+++++|+++|++++..+         ...+....
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~   81 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG   81 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccc
Confidence            678888888888888777764 56777778888888888888888888888888887776554         11112222


Q ss_pred             chhHHH------------HhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcC
Q 038432          403 SYDIII------------LLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYG  468 (602)
Q Consensus       403 ~~~~~~------------~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~g  468 (602)
                      ..+.+.            ..+..+.||++.++..++.++++.|++.|.+.+.  ..|+||||+|+..|+.+++++|++.|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  161 (229)
T d1ixva_          82 NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG  161 (229)
T ss_dssp             CHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccc
Confidence            222221            1256788999999999999999999999998876  78999999999999999999999987


Q ss_pred             -CCCCCCCCCCcCHHHHHHHcCcHHHHHHHHH-CCCCcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432          469 -LNVDSKDRHGRTAIEIAMAENNVEMVNFLVM-NGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD  534 (602)
Q Consensus       469 -a~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~-~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~  534 (602)
                       .++|.+|.+|+||||+|+..|+.++|++|++ .|+|++.+|.+|+||||+|+.   .++++.|+..+
T Consensus       162 ~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g  226 (229)
T d1ixva_         162 KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNV  226 (229)
T ss_dssp             CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHC
T ss_pred             cccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcC
Confidence             6889999999999999999999999999997 599999999999999999963   34555555443

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.98  E-value=2.6e-32  Score=267.36  Aligned_cols=175  Identities=23%  Similarity=0.249  Sum_probs=157.5

Q ss_pred             CCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHH
Q 038432          328 DPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDII  407 (602)
Q Consensus       328 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~  407 (602)
                      +.++.|+|+.||..|+.+++++|+++|+|+|.+|.+|.||||+|+..|+.++|++|+++|++++..+             
T Consensus        37 ~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~-------------  103 (291)
T d1s70b_          37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD-------------  103 (291)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC-------------
T ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccccccc-------------
Confidence            3456799999999999999999999999999999999999999999999999999999999988876             


Q ss_pred             HHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC---------------------------------------------
Q 038432          408 ILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP---------------------------------------------  442 (602)
Q Consensus       408 ~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~---------------------------------------------  442 (602)
                          ..+.|||+.|+..++.++++.|+++|+..+.                                             
T Consensus       104 ----~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~  179 (291)
T d1s70b_         104 ----NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLR  179 (291)
T ss_dssp             ----TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             ----ccccccccccccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccc
Confidence                6677777777777777777777766543221                                             


Q ss_pred             -----------------CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcc
Q 038432          443 -----------------YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVV  505 (602)
Q Consensus       443 -----------------~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~  505 (602)
                                       ..|.||||.|+..|+.++++.|+++|+|+|.+|.+|+||||+|+..|+.++|++|+++|||++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~  259 (291)
T d1s70b_         180 DARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME  259 (291)
T ss_dssp             HHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             cchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence                             467899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCChhhHHH
Q 038432          506 GANKCEFSSTNLND  519 (602)
Q Consensus       506 ~~d~~g~t~l~~a~  519 (602)
                      .+|..|+||||+|+
T Consensus       260 ~~d~~G~TaL~~A~  273 (291)
T d1s70b_         260 AVNKVGQTAFDVAD  273 (291)
T ss_dssp             CCCTTSCCTTTSCC
T ss_pred             CcCCCCCCHHHHHH
Confidence            99999999999995

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.5e-32  Score=253.28  Aligned_cols=186  Identities=24%  Similarity=0.221  Sum_probs=176.3

Q ss_pred             chhhhHhhhcCcHHHHHHHHh-cCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHh
Q 038432          332 SVNLLTVASTGNAAFLDELLK-ARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILL  410 (602)
Q Consensus       332 ~t~L~~A~~~g~~~~~~~Ll~-~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~  410 (602)
                      .+.++.+|..|+.+.++.++. .+.+++.+|.+|+||||+||..|+.+++++|++.+.+....+                
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~----------------   67 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD----------------   67 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCC----------------
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccccc----------------
Confidence            578999999999999988775 577899999999999999999999999999999999988887                


Q ss_pred             hccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHc
Q 038432          411 DMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAE  488 (602)
Q Consensus       411 ~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~  488 (602)
                       ..+.++++.|+..++.+++++|+++|++++.  ..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..
T Consensus        68 -~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~  146 (223)
T d1uoha_          68 -DAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAK  146 (223)
T ss_dssp             -TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             -ccccccccccccccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhc
Confidence             8899999999999999999999999999887  7899999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432          489 NNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD  534 (602)
Q Consensus       489 ~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~  534 (602)
                      ++.+++++|++.|++++.+|.+|+||||+|+..++.++++.|+..+
T Consensus       147 ~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~G  192 (223)
T d1uoha_         147 GNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG  192 (223)
T ss_dssp             TCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCC
Confidence            9999999999999999999999999999999999999888887665

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.8e-31  Score=245.55  Aligned_cols=200  Identities=21%  Similarity=0.196  Sum_probs=169.7

Q ss_pred             CCCchhhhHhhhcCcHHHHHHHHh----cCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchh------hHHH
Q 038432          329 PNMSVNLLTVASTGNAAFLDELLK----ARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD------YIIF  398 (602)
Q Consensus       329 ~~g~t~L~~A~~~g~~~~~~~Ll~----~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~------~~~~  398 (602)
                      .+|.||||+||..|+.++++.|++    .|+++|.+|..|+||||+|+..|+.+++++|+++|++++..+      ...+
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            369999999999999999998875    799999999999999999999999999999999999988766      1112


Q ss_pred             HhccchhHHH--------------HhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC---CCcchhHHHHHhcCCHHHH
Q 038432          399 MYNLSYDIII--------------LLDMNGNTALWEAISSKHHSIFRILYHCTAISDP---YTAGDLLCTAEKRNDMSVM  461 (602)
Q Consensus       399 ~~~~~~~~~~--------------~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~---~~g~t~L~~A~~~~~~~~~  461 (602)
                      ....+.+.+.              .....+.+|||.+.........+.|.....+...   ..+.+||+.|+..+...++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence            2222222221              1134456777777777777777777776665544   6788999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhc
Q 038432          462 EELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGH  528 (602)
Q Consensus       462 ~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~  528 (602)
                      +.++++|.+++.+|..|.||||+|+..|+.+++++|+++|||++.+|.+|+||||+|+..++.++++
T Consensus       161 ~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         161 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999988764

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.7e-31  Score=269.67  Aligned_cols=226  Identities=22%  Similarity=0.260  Sum_probs=185.1

Q ss_pred             chhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhh------HHHH------
Q 038432          332 SVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDY------IIFM------  399 (602)
Q Consensus       332 ~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~------~~~~------  399 (602)
                      .||||.||..|+.+++++|++.|+++|..|..|+||||+||..|+.++|++|+++|++++..+.      ..+.      
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~   80 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTN   80 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHH
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            3899999999999999999999999999999999999999999999999999999999987661      0000      


Q ss_pred             ------------------------------------------------------------hccchhHHH----------H
Q 038432          400 ------------------------------------------------------------YNLSYDIII----------L  409 (602)
Q Consensus       400 ------------------------------------------------------------~~~~~~~~~----------~  409 (602)
                                                                                  ...+.+.+.          .
T Consensus        81 ~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~  160 (408)
T d1n11a_          81 MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA  160 (408)
T ss_dssp             HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence                                                                        111122222          1


Q ss_pred             hhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC-----------------------------------------------
Q 038432          410 LDMNGNTALWEAISSKHHSIFRILYHCTAISDP-----------------------------------------------  442 (602)
Q Consensus       410 ~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~-----------------------------------------------  442 (602)
                      .+..|.+|||+|+..|+.+++++|+++|++++.                                               
T Consensus       161 ~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~  240 (408)
T d1n11a_         161 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQ  240 (408)
T ss_dssp             CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHH
Confidence            256788999999999999999999998886642                                               


Q ss_pred             ---------------------CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCC
Q 038432          443 ---------------------YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNG  501 (602)
Q Consensus       443 ---------------------~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~g  501 (602)
                                           ..|.|||+.|+..++.+++++|+++|++++..+..+.||||.|+..++.++++++++.|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g  320 (408)
T d1n11a_         241 EGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ  320 (408)
T ss_dssp             TTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT
T ss_pred             hCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeecccc
Confidence                                 13456677777888888889999999999998889999999999999999999999999


Q ss_pred             CCcccCCCCCCChhhHHHHHHHHhhhceeeeccCCCchhHHHhhhhhhhhhhhhcCCCCCCcceeEEEecCCC
Q 038432          502 SDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEGKSKGGNCQRVSIYRGHP  574 (602)
Q Consensus       502 a~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  574 (602)
                      ++++.+|.+|.||||+|+..++.++++.|+.+++             +.+    ..+..|.++.+.|+..||.
T Consensus       321 ~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GA-------------d~n----~~d~~G~t~L~~A~~~~~~  376 (408)
T d1n11a_         321 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA-------------SPN----EVSSDGTTPLAIAKRLGYI  376 (408)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-------------CSC----CCCSSSCCHHHHHHHTTCH
T ss_pred             ccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC-------------CCC----CCCCCCCCHHHHHHHcCCH
Confidence            9999999999999999999999998888887763             222    2344677777777777774

>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=4.6e-30  Score=234.14  Aligned_cols=191  Identities=16%  Similarity=0.297  Sum_probs=178.2

Q ss_pred             hHhHHHHhhhHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcchhHHHHhhCCHHHHHHHHHHhhHhhhhhhcccccCC
Q 038432          113 TRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVS  192 (602)
Q Consensus       113 ~~~~~~~~~~~~~~~~~m~~~~l~~~l~~ri~~y~~~~~~~~~~~~~~~l~~lp~~l~~~v~~~~~~~~l~~~~~f~~~s  192 (602)
                      +++..+|++++..+++||+.+++|++++.||++|++|.|..+..++.++++.+|++|+.++..+++.++++++|+|++++
T Consensus         1 ds~~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~~   80 (193)
T d1q3ea_           1 DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANAD   80 (193)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTSC
T ss_pred             ChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhhh
Confidence            35788999999999999999999999999999999999988888889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehhhhhcCCCceeEEEEc
Q 038432          193 KEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTK  272 (602)
Q Consensus       193 ~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~~ll~~~~~~~tv~a~  272 (602)
                      +.++..|+..++...|.||++|+.+||.++.+|||.+|.|++...+.    ....+++|++||+.+++.+.+++++++|.
T Consensus        81 ~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~~----~~~~l~~G~~fGe~~~~~~~~~~~~~~a~  156 (193)
T d1q3ea_          81 PNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGN----KEMKLSDGSYFGEICLLTRGRRTASVRAD  156 (193)
T ss_dssp             HHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC-CC----CEEEECTTCEECHHHHHHCSBCSSEEEES
T ss_pred             HHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeecCCc----ceeeeccceeeeeeeccCCCcccccceec
Confidence            99999999999999999999999999999999999999999986433    24578999999999999999999999999


Q ss_pred             ceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhh
Q 038432          273 TLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQH  307 (602)
Q Consensus       273 ~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~  307 (602)
                      +.|+++.+++++|.+++..+|+....+.+.+.+++
T Consensus       157 ~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~RL  191 (193)
T d1q3ea_         157 TYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRL  191 (193)
T ss_dssp             SCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHHH
T ss_pred             CceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHc
Confidence            99999999999999999999998888877666554

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.6e-30  Score=251.04  Aligned_cols=207  Identities=19%  Similarity=0.258  Sum_probs=150.7

Q ss_pred             chhhhHhhhcCcHHHHHHHHhcCCCCCCCC-CCCchHHHHHHhcCChHHHHHHHhcccCCCchh----------------
Q 038432          332 SVNLLTVASTGNAAFLDELLKARLDPDIGD-SKGRTPLHIAASKGHEECVLVLLKHASNVHLRD----------------  394 (602)
Q Consensus       332 ~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d-~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~----------------  394 (602)
                      .|+||.|++.|+.+++++|+++|+|+|.++ ..|+||||+|+..|+.+++++|++.+.+.+..+                
T Consensus         6 ~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (285)
T d1wdya_           6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSV   85 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCc
Confidence            455666666666666666666666655443 345566666666666666666655554443322                


Q ss_pred             -----------------------hHHHHhccch--------------------hHHHHhhccCCcHHHHHHHcCChhHHH
Q 038432          395 -----------------------YIIFMYNLSY--------------------DIIILLDMNGNTALWEAISSKHHSIFR  431 (602)
Q Consensus       395 -----------------------~~~~~~~~~~--------------------~~~~~~~~~g~tpLh~A~~~~~~~~~~  431 (602)
                                             ...+...+..                    ......+..|.||||+|+..|+.++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  165 (285)
T d1wdya_          86 KLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK  165 (285)
T ss_dssp             HHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHH
T ss_pred             cccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHH
Confidence                                   1111111111                    112233667999999999999999999


Q ss_pred             HHHhc-CCCCCC--CCcchhHHHHHh----cCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHH-CCCC
Q 038432          432 ILYHC-TAISDP--YTAGDLLCTAEK----RNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVM-NGSD  503 (602)
Q Consensus       432 ~Ll~~-g~~~~~--~~g~t~L~~A~~----~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~-~ga~  503 (602)
                      +|+++ |++++.  ..|.++++.+..    .+..+++++|+++|+++|.+|.+|.||||+|+..|+.+++++|++ .|+|
T Consensus       166 ~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~d  245 (285)
T d1wdya_         166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE  245 (285)
T ss_dssp             HHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC
T ss_pred             HHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCC
Confidence            99965 788877  566666655433    334679999999999999999999999999999999999999998 5999


Q ss_pred             cccCCCCCCChhhHHHHHHHHhhhceeeeccCCCc
Q 038432          504 VVGANKCEFSSTNLNDMLQKREIGHRITVHDDNST  538 (602)
Q Consensus       504 ~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~  538 (602)
                      ++.+|.+|.||||+|+..++.+++++|+..+++..
T Consensus       246 in~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n  280 (285)
T d1wdya_         246 INDTDSDGKTALLLAVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred             CcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            99999999999999999999999999998886543

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.5e-29  Score=221.51  Aligned_cols=151  Identities=26%  Similarity=0.323  Sum_probs=143.8

Q ss_pred             hhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhc
Q 038432          333 VNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDM  412 (602)
Q Consensus       333 t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~  412 (602)
                      +|||.||..|+.++++.|+++|+|+|.+|.+|.||||+|+ .|+.+++++|+++|++++..+                 .
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~-----------------~   64 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKD-----------------R   64 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCC-----------------T
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-ccccccccccccccccccccc-----------------c
Confidence            7999999999999999999999999999999999999886 789999999999999999988                 8


Q ss_pred             cCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCC-CCCCCCCCCcCHHHHHHHcC
Q 038432          413 NGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGL-NVDSKDRHGRTAIEIAMAEN  489 (602)
Q Consensus       413 ~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga-~~n~~d~~g~TpLh~A~~~~  489 (602)
                      .|.+||+.++..++.++++.|++.+.+++.  ..|.+|||.|+..++.+++++|+++|+ +++.+|.+|.||||+|+..+
T Consensus        65 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~  144 (156)
T d1ihba_          65 TGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG  144 (156)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcC
Confidence            999999999999999999999999998876  788999999999999999999999886 89999999999999999999


Q ss_pred             cHHHHHHHHHCC
Q 038432          490 NVEMVNFLVMNG  501 (602)
Q Consensus       490 ~~~iv~~Ll~~g  501 (602)
                      +.+++++|+++|
T Consensus       145 ~~~iv~~Ll~~G  156 (156)
T d1ihba_         145 RNEVVSLMQANG  156 (156)
T ss_dssp             CHHHHHHHHHTC
T ss_pred             CHHHHHHHHhcC
Confidence            999999999987

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=1.3e-29  Score=235.07  Aligned_cols=187  Identities=20%  Similarity=0.168  Sum_probs=170.1

Q ss_pred             CCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHH
Q 038432          328 DPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDII  407 (602)
Q Consensus       328 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~  407 (602)
                      +.+|.||||+||..|+.++++.|++.|+++|.++..+.++++.++..++..................             
T Consensus        20 d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------   86 (209)
T d1ot8a_          20 DKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNAR-------------   86 (209)
T ss_dssp             HHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCC-------------
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccc-------------
Confidence            5678999999999999999999999999999999999999999999999888777766544333222             


Q ss_pred             HHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHH
Q 038432          408 ILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIA  485 (602)
Q Consensus       408 ~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A  485 (602)
                         ...|.++.+.+.........+.|.+.+++++.  ..|.|||+.|+..+..++++.++++++++|.+|.+|.||||+|
T Consensus        87 ---~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A  163 (209)
T d1ot8a_          87 ---MHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLA  163 (209)
T ss_dssp             ---CTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             ---cccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchh
Confidence               36788999999999999999999999998877  7889999999999999999999999999999999999999999


Q ss_pred             HHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhcee
Q 038432          486 MAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRI  530 (602)
Q Consensus       486 ~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l  530 (602)
                      +..|+.++|++|+++|||++.+|..|+||||+|++.++.+++++|
T Consensus       164 ~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         164 AREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            999999999999999999999999999999999999999998875

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.2e-28  Score=214.17  Aligned_cols=149  Identities=21%  Similarity=0.290  Sum_probs=135.1

Q ss_pred             hhhhHhhhcCcHHHHHHHHhc-CCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhh
Q 038432          333 VNLLTVASTGNAAFLDELLKA-RLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLD  411 (602)
Q Consensus       333 t~L~~A~~~g~~~~~~~Ll~~-g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~  411 (602)
                      ..|+.||..|+.++++.|++. ++++|..|..|+||||+|+. |+.+++++|++++++++..+                 
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~-----------------   65 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQD-----------------   65 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCC-----------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-cccccccccccccccccccc-----------------
Confidence            459999999999999999985 78999999999999998864 88999999999999999887                 


Q ss_pred             ccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcC
Q 038432          412 MNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAEN  489 (602)
Q Consensus       412 ~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~  489 (602)
                      ..|.+|++.|+..++.+++++++++|++++.  ..|.||||+|+..|+.+++++|+ .|++++.+|.+|+||||+|+..|
T Consensus        66 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g  144 (156)
T d1bd8a_          66 TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRG  144 (156)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSC
T ss_pred             cccccccccccccccccccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcC
Confidence            8899999999999999999999999988877  67889999999999999998777 68899999999999999999999


Q ss_pred             cHHHHHHHHHC
Q 038432          490 NVEMVNFLVMN  500 (602)
Q Consensus       490 ~~~iv~~Ll~~  500 (602)
                      +.+++++|++|
T Consensus       145 ~~~iv~~Ll~h  155 (156)
T d1bd8a_         145 AQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHTT
T ss_pred             CHHHHHHHHhh
Confidence            99999999875

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=4.5e-28  Score=212.61  Aligned_cols=149  Identities=23%  Similarity=0.259  Sum_probs=139.6

Q ss_pred             CchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC-
Q 038432          364 GRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP-  442 (602)
Q Consensus       364 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~-  442 (602)
                      ..||||.||+.|+.++|++|+++|++++ .|                 ..|.||||+|+..++.++++.++........ 
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~-----------------~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~   63 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAPFT-TD-----------------WLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR   63 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CC-----------------TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCC
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCCcc-cc-----------------cCCCcccccccccccccccccccccccccccc
Confidence            3599999999999999999999999887 45                 8899999999999999999999988876655 


Q ss_pred             -CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHH
Q 038432          443 -YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDML  521 (602)
Q Consensus       443 -~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~  521 (602)
                       ..+.++++.++...+.++++++..+|++++.+|.+|+||||+|+..|+.+++++|+++|+|++.+|.+|.||||+|+..
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~  143 (153)
T d1awcb_          64 TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDN  143 (153)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             ccccccccccccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHc
Confidence             7778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcee
Q 038432          522 QKREIGHRI  530 (602)
Q Consensus       522 ~~~~~~~~l  530 (602)
                      ++.+++++|
T Consensus       144 g~~eiv~lL  152 (153)
T d1awcb_         144 GNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHHhC
Confidence            999988765

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=3.8e-30  Score=257.20  Aligned_cols=192  Identities=14%  Similarity=0.050  Sum_probs=158.8

Q ss_pred             CCCCCchhhhHhhhcCcHHHHHH---HHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccc
Q 038432          327 GDPNMSVNLLTVASTGNAAFLDE---LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLS  403 (602)
Q Consensus       327 ~~~~g~t~L~~A~~~g~~~~~~~---Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~  403 (602)
                      ++..|.||||+||.+|+.++++.   |++.|+++|.+|.+|+||||+||..|+.++|++|+++|++++..+         
T Consensus        86 ~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~---------  156 (346)
T d2ajaa1          86 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM---------  156 (346)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHH---------
T ss_pred             ccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccc---------
Confidence            56788999999999999877765   678999999999999999999999999999999999999998875         


Q ss_pred             hhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC-----CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCC----
Q 038432          404 YDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP-----YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSK----  474 (602)
Q Consensus       404 ~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~-----~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~----  474 (602)
                            .+.+|.||||+|+.+|+.++|++|++.|++...     ..+.||+|.|+.+|+.+++++|+++|++++..    
T Consensus       157 ------~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~  230 (346)
T d2ajaa1         157 ------IQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHE  230 (346)
T ss_dssp             ------HSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCT
T ss_pred             ------cccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHH
Confidence                  114589999999999999999999999986532     45678888999999999999999887543211    


Q ss_pred             -----------------------------CCC----------------CcCHHHHHHHcCcHHHHHHHHHCCCC-----c
Q 038432          475 -----------------------------DRH----------------GRTAIEIAMAENNVEMVNFLVMNGSD-----V  504 (602)
Q Consensus       475 -----------------------------d~~----------------g~TpLh~A~~~~~~~iv~~Ll~~ga~-----~  504 (602)
                                                   +.+                +.|+|+.|+..++.+++++|++.|+.     .
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~  310 (346)
T d2ajaa1         231 FEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPT  310 (346)
T ss_dssp             TTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSC
T ss_pred             HHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhccc
Confidence                                         111                23678888888999999999998764     3


Q ss_pred             ccCCCCCCChhhHHHHHHHHhhhceeeec
Q 038432          505 VGANKCEFSSTNLNDMLQKREIGHRITVH  533 (602)
Q Consensus       505 ~~~d~~g~t~l~~a~~~~~~~~~~~l~~~  533 (602)
                      +..+.+|+||||+|++.|+.+++++|+..
T Consensus       311 ~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         311 ATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             CSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             ccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            44556899999999999999999998864

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.7e-28  Score=226.49  Aligned_cols=188  Identities=20%  Similarity=0.206  Sum_probs=159.8

Q ss_pred             Hhhhhhhccccccccc----ccCC--CCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChH
Q 038432          305 QQHKKLKDLNIGDLIA----ESGE--EDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEE  378 (602)
Q Consensus       305 ~~~~~~~~~~~~~~l~----~~~~--~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~  378 (602)
                      +.+...+.......++    ..+.  +.++.+|+||||+||..|+.+++++|++.|+|++.+|..|.||||+|+..|+.+
T Consensus         7 h~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~   86 (221)
T d1iknd_           7 HLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLA   86 (221)
T ss_dssp             HHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3344444444433333    3333  347889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC---CCcchhHHHHHhc
Q 038432          379 CVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP---YTAGDLLCTAEKR  455 (602)
Q Consensus       379 ~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~---~~g~t~L~~A~~~  455 (602)
                      +++.|++.+.+.....           ........|.||||.|+..++.+++++|++.|++++.   .+|.||||+|+..
T Consensus        87 ~~~~l~~~~~~~~~~~-----------~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~  155 (221)
T d1iknd_          87 SVGVLTQSCTTPHLHS-----------ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL  155 (221)
T ss_dssp             HHHHHHHSTTTTSSSC-----------GGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT
T ss_pred             ccchhhhhcccccccc-----------cccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCcccccccc
Confidence            9999999876654332           1112235689999999999999999999999998876   5799999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCC
Q 038432          456 NDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSD  503 (602)
Q Consensus       456 ~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~  503 (602)
                      |+.+++++|+++|+|+|.+|.+|+||||+|+..++.+++++|++.+.+
T Consensus       156 g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         156 QNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             TCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             ccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            999999999999999999999999999999999999999999998765

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.7e-28  Score=213.22  Aligned_cols=150  Identities=23%  Similarity=0.276  Sum_probs=143.3

Q ss_pred             hHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--C
Q 038432          366 TPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--Y  443 (602)
Q Consensus       366 t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~  443 (602)
                      +|||+||..|+.++|++|+++|+|+|.+|                 ..|.||||+|+ .|+.+++++|+++|++++.  .
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d-----------------~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~   64 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQN-----------------GFGRTALQVMK-LGNPEIARRLLLRGANPDLKDR   64 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCC-----------------TTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccC-----------------Ccccccccccc-cccccccccccccccccccccc
Confidence            89999999999999999999999999998                 99999999886 7899999999999999987  7


Q ss_pred             CcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCC-CcccCCCCCCChhhHHHHHH
Q 038432          444 TAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGS-DVVGANKCEFSSTNLNDMLQ  522 (602)
Q Consensus       444 ~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga-~~~~~d~~g~t~l~~a~~~~  522 (602)
                      .+.+|++.++..++.+.++.|++++.+++..|..|.+|||+|+..++.+++++|+++|+ +++.+|.+|.||||+|+..+
T Consensus        65 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~  144 (156)
T d1ihba_          65 TGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG  144 (156)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcC
Confidence            88999999999999999999999999999999999999999999999999999999876 89999999999999999999


Q ss_pred             HHhhhceeeec
Q 038432          523 KREIGHRITVH  533 (602)
Q Consensus       523 ~~~~~~~l~~~  533 (602)
                      +.+++++|+.+
T Consensus       145 ~~~iv~~Ll~~  155 (156)
T d1ihba_         145 RNEVVSLMQAN  155 (156)
T ss_dssp             CHHHHHHHHHT
T ss_pred             CHHHHHHHHhc
Confidence            99999888765

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=2.1e-27  Score=208.30  Aligned_cols=148  Identities=28%  Similarity=0.349  Sum_probs=140.8

Q ss_pred             chhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhh
Q 038432          332 SVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLD  411 (602)
Q Consensus       332 ~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~  411 (602)
                      .||||.||+.|+.++++.|+++|++++ .|..|+||||+|+..++.++++.++......+..+                 
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~-----------------   64 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART-----------------   64 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCC-----------------
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccc-----------------
Confidence            499999999999999999999999887 68999999999999999999999999888777666                 


Q ss_pred             ccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcC
Q 038432          412 MNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAEN  489 (602)
Q Consensus       412 ~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~  489 (602)
                      ..+.++++.++...+.+++++++++|++.+.  ..|+||||+|+..|+.+++++|+++|+|+|.+|.+|.||||+|+.+|
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g  144 (153)
T d1awcb_          65 KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNG  144 (153)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cccccccccccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcC
Confidence            7889999999999999999999999998876  88999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHH
Q 038432          490 NVEMVNFL  497 (602)
Q Consensus       490 ~~~iv~~L  497 (602)
                      +.+++++|
T Consensus       145 ~~eiv~lL  152 (153)
T d1awcb_         145 NEDLAEIL  152 (153)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHhC
Confidence            99999987

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4e-27  Score=229.17  Aligned_cols=192  Identities=21%  Similarity=0.288  Sum_probs=163.6

Q ss_pred             HHHHHhhhhhhcccccccccccCCCC---CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCC-----------------
Q 038432          301 KNFLQQHKKLKDLNIGDLIAESGEED---GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIG-----------------  360 (602)
Q Consensus       301 ~~ll~~~~~~~~~~~~~~l~~~~~~~---~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~-----------------  360 (602)
                      .+++..+.+.++.+..+.|++.++++   .+..|.||||+|+..|+.++++.|++.+.+.+..                 
T Consensus         6 ~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (285)
T d1wdya_           6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSV   85 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCc
Confidence            45677788889999999999998765   3446999999999999999999998876544221                 


Q ss_pred             -----------------------------------------------------------CCCCchHHHHHHhcCChHHHH
Q 038432          361 -----------------------------------------------------------DSKGRTPLHIAASKGHEECVL  381 (602)
Q Consensus       361 -----------------------------------------------------------d~~g~t~Lh~A~~~g~~~~v~  381 (602)
                                                                                 +..|.||||+|+..|+.++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  165 (285)
T d1wdya_          86 KLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK  165 (285)
T ss_dssp             HHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHH
T ss_pred             cccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHH
Confidence                                                                       123667888888888888888


Q ss_pred             HHHhc-ccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHc----CChhHHHHHHhcCCCCCC--CCcchhHHHHHh
Q 038432          382 VLLKH-ASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISS----KHHSIFRILYHCTAISDP--YTAGDLLCTAEK  454 (602)
Q Consensus       382 ~Ll~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~----~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~  454 (602)
                      +|+++ |++++..+                 ..|.++++.+...    +..+++++|+++|++++.  ..|.||||.|+.
T Consensus       166 ~Ll~~~~~~i~~~~-----------------~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~  228 (285)
T d1wdya_         166 ILLDEMGADVNACD-----------------NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE  228 (285)
T ss_dssp             HHHHTSCCCTTCCC-----------------TTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHH
T ss_pred             HHHhccCCCccccc-----------------CCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhh
Confidence            88864 78888777                 8888888776554    345799999999999987  689999999999


Q ss_pred             cCCHHHHHHHHH-cCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCC
Q 038432          455 RNDMSVMEELVK-YGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK  509 (602)
Q Consensus       455 ~~~~~~~~~Ll~-~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~  509 (602)
                      .|+.+++++|++ .|+|+|.+|.+|.||||+|++.|+.++|++|+++|||+|++|.
T Consensus       229 ~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         229 KKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             TTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             cCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            999999999997 5999999999999999999999999999999999999999884

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-27  Score=210.41  Aligned_cols=149  Identities=21%  Similarity=0.209  Sum_probs=140.3

Q ss_pred             hHHHHHHhcCChHHHHHHHhc-ccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--
Q 038432          366 TPLHIAASKGHEECVLVLLKH-ASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--  442 (602)
Q Consensus       366 t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--  442 (602)
                      ++||.||..|+.++|+.|++. ++++|..|                 ..|+||||+|+. |+.+++++|++++++++.  
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d-----------------~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~   65 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALN-----------------RFGKTALQVMMF-GSTAIALELLKQGASPNVQD   65 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCC-----------------TTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccC-----------------CCCCcccccccc-cccccccccccccccccccc
Confidence            459999999999999999985 88999998                 999999999875 889999999999999887  


Q ss_pred             CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHH
Q 038432          443 YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQ  522 (602)
Q Consensus       443 ~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~  522 (602)
                      ..|.+|++.++..++.++++.++++|+++|.+|.+|.||||+||..|+.+++++|+ .|+|++.+|.+|+||||+|+..+
T Consensus        66 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g  144 (156)
T d1bd8a_          66 TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRG  144 (156)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSC
T ss_pred             cccccccccccccccccccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcC
Confidence            77899999999999999999999999999999999999999999999999999887 79999999999999999999999


Q ss_pred             HHhhhceeeec
Q 038432          523 KREIGHRITVH  533 (602)
Q Consensus       523 ~~~~~~~l~~~  533 (602)
                      +.+++++|+.+
T Consensus       145 ~~~iv~~Ll~h  155 (156)
T d1bd8a_         145 AQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHTT
T ss_pred             CHHHHHHHHhh
Confidence            99999988764

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3.7e-27  Score=221.59  Aligned_cols=176  Identities=21%  Similarity=0.196  Sum_probs=149.9

Q ss_pred             CCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCC---CCCCCchHHHHHHhcCChHHHHHHHhcccCCCchh-------
Q 038432          325 EDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDI---GDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD-------  394 (602)
Q Consensus       325 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~---~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~-------  394 (602)
                      +.++.+|.||||+|+..|+.+++++|++.|++++.   .+..|.||+|+|+..+..++++.++..+.+.+...       
T Consensus        28 ~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (229)
T d1ixva_          28 LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVT  107 (229)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCC
T ss_pred             cccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34788999999999999999999999999999874   57789999999999999999999998877654432       


Q ss_pred             -hHHHHhccchhHHHH----------hhccCCcHHHHHHHcCChhHHHHHHhcCC-CCCC--CCcchhHHHHHhcCCHHH
Q 038432          395 -YIIFMYNLSYDIIIL----------LDMNGNTALWEAISSKHHSIFRILYHCTA-ISDP--YTAGDLLCTAEKRNDMSV  460 (602)
Q Consensus       395 -~~~~~~~~~~~~~~~----------~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~-~~~~--~~g~t~L~~A~~~~~~~~  460 (602)
                       ........+.+++..          .|..|+||||+|+..|+.+++++|++.|. +++.  ..|+||||+|+..|+.++
T Consensus       108 ~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~  187 (229)
T d1ixva_         108 CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDA  187 (229)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHH
Confidence             223333444444432          37889999999999999999999999984 5554  889999999999999999


Q ss_pred             HHHHHH-cCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCC
Q 038432          461 MEELVK-YGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSD  503 (602)
Q Consensus       461 ~~~Ll~-~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~  503 (602)
                      +++|++ .|+|++.+|.+|+||||+|+.   .+++++|+++|+|
T Consensus       188 v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         188 AVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             HHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             HHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence            999996 699999999999999999984   5899999999997

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=5.7e-27  Score=229.74  Aligned_cols=175  Identities=19%  Similarity=0.195  Sum_probs=94.1

Q ss_pred             CCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCCh---HHHHHHHhc-ccCCCchhhHHHHhccc
Q 038432          328 DPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHE---ECVLVLLKH-ASNVHLRDYIIFMYNLS  403 (602)
Q Consensus       328 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~---~~v~~Ll~~-g~~~~~~~~~~~~~~~~  403 (602)
                      |.+|+||||+||..|+.++++.|++.|+|++.+|..|+||||.||..++.   ..+..+++. +.+++..|         
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d---------  174 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED---------  174 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEEC---------
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcc---------
Confidence            44555566666666666666665555566555555566666655554431   111111111 12223332         


Q ss_pred             hhHHHHhhccCCcHHHHHHHcCCh----h--------HHHHHHhcCCCCCC---CCcchhHHHHHhcCCHHHHHHH-H--
Q 038432          404 YDIIILLDMNGNTALWEAISSKHH----S--------IFRILYHCTAISDP---YTAGDLLCTAEKRNDMSVMEEL-V--  465 (602)
Q Consensus       404 ~~~~~~~~~~g~tpLh~A~~~~~~----~--------~~~~Ll~~g~~~~~---~~g~t~L~~A~~~~~~~~~~~L-l--  465 (602)
                              ..|+||||+++..+..    .        ++.++++.+.....   ..+.++++.+........++.+ +  
T Consensus       175 --------~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (301)
T d1sw6a_         175 --------SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKW  246 (301)
T ss_dssp             --------TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHH
T ss_pred             --------cccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHH
Confidence                    5555666555543321    1        22233333332221   2223333333222222211111 0  


Q ss_pred             HcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHH
Q 038432          466 KYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLND  519 (602)
Q Consensus       466 ~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~  519 (602)
                      ..+..+|.+|.+|+||||+||+.|+.++|++|+++|||++.+|+.|.||||+|+
T Consensus       247 ~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         247 IIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             HHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            012237899999999999999999999999999999999999999999999984

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.94  E-value=2e-27  Score=232.26  Aligned_cols=195  Identities=17%  Similarity=0.171  Sum_probs=163.3

Q ss_pred             HHHhhhhhhcccccccccccCCCC--CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHH
Q 038432          303 FLQQHKKLKDLNIGDLIAESGEED--GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECV  380 (602)
Q Consensus       303 ll~~~~~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v  380 (602)
                      .+..+...++.+.++.|++.|+++  ++.+|.||||+|+..|+.+++++|+++|++.+..+..+.|||++|+..++.+++
T Consensus        43 ~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~  122 (291)
T d1s70b_          43 VFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIA  122 (291)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccchh
Confidence            345566677788888888888654  688899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccCCCchhh------HHHHhccchhHH-------------------------------------HHhhccCCcH
Q 038432          381 LVLLKHASNVHLRDY------IIFMYNLSYDII-------------------------------------ILLDMNGNTA  417 (602)
Q Consensus       381 ~~Ll~~g~~~~~~~~------~~~~~~~~~~~~-------------------------------------~~~~~~g~tp  417 (602)
                      +.|+++|++.+..+.      ..+......+.+                                     ...+..|.||
T Consensus       123 ~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  202 (291)
T d1s70b_         123 EYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTA  202 (291)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCH
T ss_pred             hcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCCh
Confidence            999999988876650      000000000000                                     1126779999


Q ss_pred             HHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHH
Q 038432          418 LWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVN  495 (602)
Q Consensus       418 Lh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~  495 (602)
                      ||.|+..|+.++++.|+++|++++.  ..|+||||+|+..|+.+++++|+++|+|+|.+|.+|+||||+|++    ++++
T Consensus       203 L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e----~~~~  278 (291)
T d1s70b_         203 LHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE----DILG  278 (291)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS----GGGH
T ss_pred             hhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH----HHHH
Confidence            9999999999999999999999986  789999999999999999999999999999999999999999975    5777


Q ss_pred             HHHHCC
Q 038432          496 FLVMNG  501 (602)
Q Consensus       496 ~Ll~~g  501 (602)
                      +|.+..
T Consensus       279 ~L~~~~  284 (291)
T d1s70b_         279 YLEELQ  284 (291)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            776643

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.94  E-value=4.2e-26  Score=220.89  Aligned_cols=199  Identities=20%  Similarity=0.215  Sum_probs=159.5

Q ss_pred             HHHHhhhhhhccccccccc--------ccCCC--CCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHH
Q 038432          302 NFLQQHKKLKDLNIGDLIA--------ESGEE--DGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIA  371 (602)
Q Consensus       302 ~ll~~~~~~~~~~~~~~l~--------~~~~~--~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A  371 (602)
                      +.++.+...+..+.++.|+        +.|++  .++.+|.||||+|+..|+.+++++|+++|+|+|.+|.+|.|||++|
T Consensus        35 T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a  114 (277)
T d2fo1e1          35 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQA  114 (277)
T ss_dssp             CHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccccccccccccccccccccch
Confidence            3455566677777777764        33444  3788999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHhcc---cCCCchh------hHHHHhccchh---------------------HHHHhhccCCcHHHHH
Q 038432          372 ASKGHEECVLVLLKHA---SNVHLRD------YIIFMYNLSYD---------------------IIILLDMNGNTALWEA  421 (602)
Q Consensus       372 ~~~g~~~~v~~Ll~~g---~~~~~~~------~~~~~~~~~~~---------------------~~~~~~~~g~tpLh~A  421 (602)
                      +..++.++++.+...+   ..++..+      ..........+                     ..+..+..|.||||++
T Consensus       115 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~  194 (277)
T d2fo1e1         115 AANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA  194 (277)
T ss_dssp             HHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHH
T ss_pred             hhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccc
Confidence            9999999999988653   2333322      00001111000                     0112356799999999


Q ss_pred             HHcCChhHHHHHH-hcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHH
Q 038432          422 ISSKHHSIFRILY-HCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLV  498 (602)
Q Consensus       422 ~~~~~~~~~~~Ll-~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll  498 (602)
                      +..++.++++.++ ..+.+.+.  ..|.||||+|+..|+.+++++|+++|+|+|.+|.+|+||||+|+..|+.++|++|+
T Consensus       195 ~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~  274 (277)
T d2fo1e1         195 AQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD  274 (277)
T ss_dssp             HSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999998755 56666665  78999999999999999999999999999999999999999999999999999998


Q ss_pred             HC
Q 038432          499 MN  500 (602)
Q Consensus       499 ~~  500 (602)
                      +.
T Consensus       275 ~c  276 (277)
T d2fo1e1         275 RC  276 (277)
T ss_dssp             TT
T ss_pred             Hh
Confidence            63

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.9e-26  Score=192.72  Aligned_cols=118  Identities=18%  Similarity=0.215  Sum_probs=83.1

Q ss_pred             CchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC-
Q 038432          364 GRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP-  442 (602)
Q Consensus       364 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~-  442 (602)
                      +.++||+|+..|+.++|++|+++|+|+|..+                 ..|.||||.|+ .|+.+++++|+++|++++. 
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~-----------------~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~   64 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPN-----------------SYGRRPIQVMM-MGSARVAELLLLHGAEPNCA   64 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCC-----------------SSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcccccc-----------------ccccccccccc-cccccccccccccccccccc
Confidence            3456666666666666666666666666665                 66666666553 4666666666666666554 


Q ss_pred             -CCc-chhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHH
Q 038432          443 -YTA-GDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVM  499 (602)
Q Consensus       443 -~~g-~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~  499 (602)
                       ..+ .||||+|+..|+.+++++|+++|+|+|.+|.+|+||||+|+..|+.+++++|++
T Consensus        65 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          65 DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence             222 356777777777777888888888888888888888888888888888888864

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=6e-26  Score=188.56  Aligned_cols=104  Identities=15%  Similarity=0.157  Sum_probs=101.7

Q ss_pred             CcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHH
Q 038432          415 NTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVE  492 (602)
Q Consensus       415 ~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~  492 (602)
                      .|||++|++.|+.+++++|+++|++++.  ..|+||||+|+..|+.+++++|+++|+|+|.+|.+|+||||+|+..|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            3899999999999999999999999988  78999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCcccCCCCCCChhhHH
Q 038432          493 MVNFLVMNGSDVVGANKCEFSSTNLN  518 (602)
Q Consensus       493 iv~~Ll~~ga~~~~~d~~g~t~l~~a  518 (602)
                      ++++|+++|+|++.+|.+|.||||+|
T Consensus        83 ~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             hhhhhhcccccceeeCCCCCCHHHHH
Confidence            99999999999999999999999998

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.92  E-value=7.5e-26  Score=209.34  Aligned_cols=198  Identities=22%  Similarity=0.230  Sum_probs=176.0

Q ss_pred             HHHHHHHHhcCCCCCC-CCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHH
Q 038432          344 AAFLDELLKARLDPDI-GDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAI  422 (602)
Q Consensus       344 ~~~~~~Ll~~g~~~n~-~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~  422 (602)
                      .|+++.|+++|+|+|. .|.+|.||||+||..|+.+++++|++.|++++.++                 ..+.++++.++
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~-----------------~~~~~~~~~~~   64 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQD-----------------NTGRTPLHAAV   64 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-----------------TTSCCHHHHHH
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccc-----------------ccccccccccc
Confidence            4799999999999998 58999999999999999999999999999999998                 99999999999


Q ss_pred             HcCChhHHHHHHhcCCCCCC---CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHH
Q 038432          423 SSKHHSIFRILYHCTAISDP---YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVM  499 (602)
Q Consensus       423 ~~~~~~~~~~Ll~~g~~~~~---~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~  499 (602)
                      ..++................   ..+.++.+.+.........+.|..++++++.+|..|+||||+|+..+..++++.|++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~  144 (209)
T d1ot8a_          65 AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLM  144 (209)
T ss_dssp             HTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecc
Confidence            99999888777766554433   678889999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccCCCCCCChhhHHHHHHHHhhhceeeeccCCCchhHHHhhhhhhhhhhhhcCCCCCCcceeEEEecCCCc
Q 038432          500 NGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEGKSKGGNCQRVSIYRGHPL  575 (602)
Q Consensus       500 ~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  575 (602)
                      ++++++.+|..|.||||+|+..|+.++++.|+..+             ++.+    .....|.++.++++..||..
T Consensus       145 ~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g-------------ad~n----~~d~~g~Tpl~~A~~~~~~~  203 (209)
T d1ot8a_         145 HHANRDAQDDKDETPLFLAAREGSYEASKALLDNF-------------ANRE----ITDHMDRLPRDVASERLHHD  203 (209)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-------------CCTT----CCCTTSCCHHHHHHHTTCHH
T ss_pred             ccccccccccccccccchhccccHHHHHHHHHHCC-------------CCCC----CcCCCCCCHHHHHHHcCCHH
Confidence            99999999999999999999999999988888766             2222    23346778888888888863

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=4.6e-26  Score=189.31  Aligned_cols=105  Identities=19%  Similarity=0.125  Sum_probs=101.7

Q ss_pred             chHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--
Q 038432          365 RTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--  442 (602)
Q Consensus       365 ~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--  442 (602)
                      .|||++|++.|+.++|++|+++|+|++..+                 ..|+||||+|+..|+.+++++|+++|++++.  
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~-----------------~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d   65 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTL-----------------EGGRKPLHYAADCGQLEILEFLLLKGADINAPD   65 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCS-----------------SSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCS
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcccccc-----------------ccccccccccccccccccccccccccceeeecc
Confidence            589999999999999999999999999998                 9999999999999999999999999999987  


Q ss_pred             CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHH
Q 038432          443 YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAM  486 (602)
Q Consensus       443 ~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~  486 (602)
                      ..|+||||+|+.+|+.+++++|+++|+|+|.+|.+|.||||+|.
T Consensus        66 ~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          66 KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             SSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             cccccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            78999999999999999999999999999999999999999984

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.5e-25  Score=185.37  Aligned_cols=119  Identities=14%  Similarity=0.085  Sum_probs=111.6

Q ss_pred             cCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCc-CHHHHHHHcC
Q 038432          413 NGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGR-TAIEIAMAEN  489 (602)
Q Consensus       413 ~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~-TpLh~A~~~~  489 (602)
                      .+.++||+|+..|+.+++++|+++|++++.  ..|.||||.|+ .|+.+++++|+++|+++|.+|..|. ||||+|+..|
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g   80 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG   80 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHT
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            356899999999999999999999999987  78999999775 7999999999999999999999876 6999999999


Q ss_pred             cHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeee
Q 038432          490 NVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITV  532 (602)
Q Consensus       490 ~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~  532 (602)
                      +.+++++|+++|+|++.+|..|+||+|+|+..++.+++++|..
T Consensus        81 ~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          81 FLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999999999999999999999999999988764

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.4e-24  Score=181.19  Aligned_cols=118  Identities=22%  Similarity=0.197  Sum_probs=89.5

Q ss_pred             hHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--C
Q 038432          366 TPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--Y  443 (602)
Q Consensus       366 t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~  443 (602)
                      ++||.||..|+.++|++|+++|+|+|.+|                 ..|+||||+|+..|+.+++++|+++|++++.  .
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d-----------------~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~   65 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPN-----------------DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS   65 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCC-----------------TTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccc-----------------cccccccccccccccccccccccccccccccccc
Confidence            67888888888888888888888888887                 8888888888888888888888777777765  6


Q ss_pred             CcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCC-CCcCHHHHH--HHcCcHHHHHHHHHC
Q 038432          444 TAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDR-HGRTAIEIA--MAENNVEMVNFLVMN  500 (602)
Q Consensus       444 ~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~-~g~TpLh~A--~~~~~~~iv~~Ll~~  500 (602)
                      +|+||||+|+.+|+.+++++|+++|+++|..+. .|+||++++  +..|+.+++++|++.
T Consensus        66 ~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          66 DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             cCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            677777777777777777777777777776653 466665554  455667777777653

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.8e-24  Score=180.86  Aligned_cols=120  Identities=22%  Similarity=0.214  Sum_probs=111.0

Q ss_pred             chhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhh
Q 038432          332 SVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLD  411 (602)
Q Consensus       332 ~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~  411 (602)
                      .++|+.||..|+.++++.|+++|+|+|.+|.+|+||||+||..|+.+++++|+++|++++..|                 
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d-----------------   64 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD-----------------   64 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCC-----------------
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccccccccccccccccccccccccc-----------------
Confidence            368999999999999999999999999999999999999999999999999999999999998                 


Q ss_pred             ccCCcHHHHHHHcCChhHHHHHHhcCCCCCC---CCcchhHHH--HHhcCCHHHHHHHHHcC
Q 038432          412 MNGNTALWEAISSKHHSIFRILYHCTAISDP---YTAGDLLCT--AEKRNDMSVMEELVKYG  468 (602)
Q Consensus       412 ~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~---~~g~t~L~~--A~~~~~~~~~~~Ll~~g  468 (602)
                      .+|+||||+|+..|+.+++++|+++|++++.   ..+.||+++  |+..|+.+++++|++.+
T Consensus        65 ~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          65 SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             ccCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            9999999999999999999999999999986   457787665  46789999999998753

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.8e-24  Score=197.67  Aligned_cols=171  Identities=20%  Similarity=0.264  Sum_probs=142.7

Q ss_pred             CCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCc----hh------
Q 038432          325 EDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHL----RD------  394 (602)
Q Consensus       325 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~----~~------  394 (602)
                      +.++.+|+||||+|+..|+.++++.|++.|++++..+..|.++++.|...++.++++.+.........    ..      
T Consensus        34 n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (228)
T d1k1aa_          34 DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA  113 (228)
T ss_dssp             CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH
T ss_pred             CccCCCCCccceehhcccccccccccccccccccccccccccccccccccccccchhhhhhccccccccccccccccccc
Confidence            34778899999999999999999999999999999999999999999999999999988765322211    11      


Q ss_pred             hHHHHhccch-----------hHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHH
Q 038432          395 YIIFMYNLSY-----------DIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVM  461 (602)
Q Consensus       395 ~~~~~~~~~~-----------~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~  461 (602)
                      ..........           +.....+..|.+||+.|+..+...+++.++++|.+.+.  ..|.||||+|+..|+.+++
T Consensus       114 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v  193 (228)
T d1k1aa_         114 LHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLV  193 (228)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHH
T ss_pred             cccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHH
Confidence            0011111111           11112356789999999999999999999999998887  7899999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHH
Q 038432          462 EELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVN  495 (602)
Q Consensus       462 ~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~  495 (602)
                      ++|+++|+|+|.+|.+|+||||+|+++|+.++||
T Consensus       194 ~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         194 RTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            9999999999999999999999999999999985

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.90  E-value=1.6e-25  Score=223.33  Aligned_cols=184  Identities=14%  Similarity=0.066  Sum_probs=144.8

Q ss_pred             HHHhhhhhhcc---cccccccccCCCC--CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCC--CCCchHHHHHHhcC
Q 038432          303 FLQQHKKLKDL---NIGDLIAESGEED--GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGD--SKGRTPLHIAASKG  375 (602)
Q Consensus       303 ll~~~~~~~~~---~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d--~~g~t~Lh~A~~~g  375 (602)
                      .+..+...++.   +..+.|.+.++++  .+.+|.||||+||+.|+.+++++|++.|++++..+  .+|+||||+||..|
T Consensus        93 ~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g  172 (346)
T d2ajaa1          93 ICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENG  172 (346)
T ss_dssp             HHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHh
Confidence            34444555543   3345577777654  67789999999999999999999999999998875  46999999999999


Q ss_pred             ChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC-------------
Q 038432          376 HEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP-------------  442 (602)
Q Consensus       376 ~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~-------------  442 (602)
                      +.++|++|++.|++....+              ..+..|.||+|.|+.+|+.+++++|+++|++++.             
T Consensus       173 ~~~iv~~Ll~~~~~~~~~~--------------~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~  238 (346)
T d2ajaa1         173 HLHVLNRLCELAPTEATAM--------------IQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYV  238 (346)
T ss_dssp             CHHHHHHHHHSCGGGHHHH--------------HHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTH
T ss_pred             hHHHHHHHHHcCCcccccc--------------cccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhh
Confidence            9999999999998764332              2235677889999999999999999998764321             


Q ss_pred             ----------------------C----------------CcchhHHHHHhcCCHHHHHHHHHcCCC-----CCCCCCCCc
Q 038432          443 ----------------------Y----------------TAGDLLCTAEKRNDMSVMEELVKYGLN-----VDSKDRHGR  479 (602)
Q Consensus       443 ----------------------~----------------~g~t~L~~A~~~~~~~~~~~Ll~~ga~-----~n~~d~~g~  479 (602)
                                            .                .+.++++.|+..|..+++++|++.++.     .+..+.+|+
T Consensus       239 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~  318 (346)
T d2ajaa1         239 NPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDAN  318 (346)
T ss_dssp             HHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCC
T ss_pred             hHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCC
Confidence                                  0                122567888889999999999987753     455667899


Q ss_pred             CHHHHHHHcCcHHHHHHHHHC
Q 038432          480 TAIEIAMAENNVEMVNFLVMN  500 (602)
Q Consensus       480 TpLh~A~~~~~~~iv~~Ll~~  500 (602)
                      ||||+||+.|+.++|++||+.
T Consensus       319 T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         319 ELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHHHHHTCTTHHHHHTTS
T ss_pred             cHHHHHHHcCcHHHHHHHhCC
Confidence            999999999999999999974

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.6e-23  Score=204.91  Aligned_cols=174  Identities=16%  Similarity=0.150  Sum_probs=113.1

Q ss_pred             HHHHhhhhhhcccccccccccCCCC--CCCCCchhhhHhhhcCcH-------HHHHHHHhcCCCCCCCCCCCchHHHHHH
Q 038432          302 NFLQQHKKLKDLNIGDLIAESGEED--GDPNMSVNLLTVASTGNA-------AFLDELLKARLDPDIGDSKGRTPLHIAA  372 (602)
Q Consensus       302 ~ll~~~~~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g~~-------~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~  372 (602)
                      +.++.+...++.++.+.|++.+++.  ++..|+||||.||..++.       ++++++.   .+++..|..|+||||+|+
T Consensus       109 T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~~~d~~g~t~lh~~~  185 (301)
T d1sw6a_         109 TPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLILEDSMNRTILHHII  185 (301)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGGEECTTCCCHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hhhhhcccccCCHHHHHH
Confidence            4677788889999999999999765  788899999999987652       3444433   346677899999999999


Q ss_pred             hcCChH----HHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHH-----HHHhcCCCCCCC
Q 038432          373 SKGHEE----CVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFR-----ILYHCTAISDPY  443 (602)
Q Consensus       373 ~~g~~~----~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~-----~Ll~~g~~~~~~  443 (602)
                      ..+..+    ++++.++...        ..+..............+.++++.+........+.     .++....+....
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~  257 (301)
T d1sw6a_         186 ITSGMTGCSAAAKYYLDILM--------GWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS  257 (301)
T ss_dssp             HHHTSTTCHHHHHHHHHHHH--------HHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCT
T ss_pred             HHhCccccHHHHHHHHHHHH--------HHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCC
Confidence            777643    4444443221        11111111111112334455666655544433332     233444444458


Q ss_pred             CcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHH
Q 038432          444 TAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAM  486 (602)
Q Consensus       444 ~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~  486 (602)
                      .|+||||+|++.|+.+++++|+++|||+|.+|..|.||||+|+
T Consensus       258 ~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         258 NGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            8999999999999999999999999999999999999999985

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=2.8e-22  Score=173.79  Aligned_cols=127  Identities=15%  Similarity=0.075  Sum_probs=103.8

Q ss_pred             HHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHc---CChhHHHHHHhcCCCCCC-
Q 038432          367 PLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISS---KHHSIFRILYHCTAISDP-  442 (602)
Q Consensus       367 ~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~---~~~~~~~~Ll~~g~~~~~-  442 (602)
                      .|..|++.++...+..++..|+|++...           .....+..|+||||+|+..   |+.+++++|+++|++++. 
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~-----------~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~   77 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKI-----------PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ   77 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBC-----------CCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCC
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCC-----------CcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhh
Confidence            3456677888888888888887776541           0000126799999999975   678899999999999887 


Q ss_pred             -CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCc
Q 038432          443 -YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV  504 (602)
Q Consensus       443 -~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~  504 (602)
                       ..|+||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|+..|+.+++++|++.++..
T Consensus        78 d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          78 TGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             hhhhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence             77999999999999999999999999999999999999999999999999999999876543

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=5.7e-22  Score=171.75  Aligned_cols=120  Identities=18%  Similarity=0.114  Sum_probs=109.2

Q ss_pred             hhhHhhhcCcHHHHHHHHhcCCCCCCC------CCCCchHHHHHHhc---CChHHHHHHHhcccCCCchhhHHHHhccch
Q 038432          334 NLLTVASTGNAAFLDELLKARLDPDIG------DSKGRTPLHIAASK---GHEECVLVLLKHASNVHLRDYIIFMYNLSY  404 (602)
Q Consensus       334 ~L~~A~~~g~~~~~~~Ll~~g~~~n~~------d~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~  404 (602)
                      .|+.|++.+++..+..++..|.|++..      +..|+||||+|+..   |+.++|++|+++|+++|.+|          
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d----------   78 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQT----------   78 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCC----------
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhh----------
Confidence            456788999999999999999887654      67899999999974   67899999999999999998          


Q ss_pred             hHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCC
Q 038432          405 DIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLN  470 (602)
Q Consensus       405 ~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~  470 (602)
                             ..|+||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..|+.+++++|++.++.
T Consensus        79 -------~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          79 -------GKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             -------TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             -------hhhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence                   9999999999999999999999999999987  7899999999999999999999997654

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=3.7e-18  Score=144.86  Aligned_cols=122  Identities=18%  Similarity=0.273  Sum_probs=114.4

Q ss_pred             hhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeeh
Q 038432          177 LFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGE  256 (602)
Q Consensus       177 ~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe  256 (602)
                      ...+.|+++|+|++++++.+..++..++...|.+|++|+.+||.++.+|||.+|.|+++...++.+..+..+.+|++||+
T Consensus        13 ~l~~~l~~~~~F~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~y~I~~G~v~v~~~~~~~~~~~~~l~~g~~fg~   92 (136)
T d1cx4a1          13 RLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGE   92 (136)
T ss_dssp             HHHHHHTTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEEETTEEEEEEEEESSCEECH
T ss_pred             HHHHHHhCCHhhhcCCHHHHHHHhcceEEEEECCCCEEEECCCcchhhhhhhhheeEEeeccccceeeeeccCCccccch
Confidence            34478999999999999999999999999999999999999999999999999999998877777888899999999999


Q ss_pred             hhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHH
Q 038432          257 VGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVS  298 (602)
Q Consensus       257 ~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~  298 (602)
                      .+++.+.|+..+++|.++|.++.++++.|.+++..++.....
T Consensus        93 ~~l~~~~~~~~s~~a~~~~~~~~i~~~~f~~ll~~~~~~~r~  134 (136)
T d1cx4a1          93 LALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRK  134 (136)
T ss_dssp             HHHHHCCCCCSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCcceEEEEECCCEEEEEEeHHHHHHHHHhCHHHHHh
Confidence            999999999999999999999999999999999999876644

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=7.3e-18  Score=145.25  Aligned_cols=130  Identities=16%  Similarity=0.233  Sum_probs=116.8

Q ss_pred             hhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEecc-------CceeEEEEeCCCC
Q 038432          180 HTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEM-------EKEIAVGTLQTGD  252 (602)
Q Consensus       180 ~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~-------~~~~~~~~l~~g~  252 (602)
                      .+|+++|+|++++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++....       ++...+..+++|+
T Consensus         2 ~~l~~~p~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~v~~~~~~~~~~~~~~~~~i~~~~~g~   81 (147)
T d1cx4a2           2 SFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMKRKGKSDIEENGAVEIARCLRGQ   81 (147)
T ss_dssp             HHHHTCGGGTTSCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEEEEEEEEEEC--------CCEEEEEEECTTC
T ss_pred             hhHhcCHhhcCCCHHHHHHHHHhCEEEEECCCCEEEeCCCCCceeEEEecceEEEEEecCCCccccccceeeeeeccCCc
Confidence            578999999999999999999999999999999999999999999999999999986432       3456788999999


Q ss_pred             eeehhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432          253 MFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK  309 (602)
Q Consensus       253 ~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~  309 (602)
                      +||+.+++.+.+++++++|.++|+++.+++++|.+++.++|+...+.+....++...
T Consensus        82 ~fGe~~~~~~~~~~~t~~a~~~~~~~~i~~~~f~~ll~~~~~i~~~~~~~~~~~L~~  138 (147)
T d1cx4a2          82 YFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYEEQLVA  138 (147)
T ss_dssp             EESCHHHHHTCCCSSEEEEEEEEEEEEEEHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred             EeeehhhcCCCCceEEEEECCCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998877766665554443

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.74  E-value=2e-17  Score=139.85  Aligned_cols=117  Identities=20%  Similarity=0.262  Sum_probs=107.7

Q ss_pred             hHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehh
Q 038432          178 FLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEV  257 (602)
Q Consensus       178 ~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~  257 (602)
                      ..+.+++.++|++++++++..++..++.+.|++|++|+.+||.++.+|||.+|.|++...+    ..+..+++|++||+.
T Consensus        18 l~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~gd~~~~~yiI~~G~v~v~~~~----~~~~~l~~G~~fGe~   93 (136)
T d1ne6a1          18 LAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNN----EWATSVGEGGSFGEL   93 (136)
T ss_dssp             HHHHHHHCGGGTSCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEETT----EEEEEECTTCEECCH
T ss_pred             HHHHHhCCHhhhhCCHHHHHHHhcceEEEEECCCCEEEeCCCCcceeeeecCCceeeeccc----cccceeccccccccH
Confidence            3568889999999999999999999999999999999999999999999999999998633    356789999999999


Q ss_pred             hhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHH
Q 038432          258 GALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVS  298 (602)
Q Consensus       258 ~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~  298 (602)
                      +++.+.++.++++|.++|.++.+++++|.+++..++.....
T Consensus        94 ~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~~~~~r~  134 (136)
T d1ne6a1          94 ALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRK  134 (136)
T ss_dssp             HHHHCCCCCSEEEESSCEEEEEEEHHHHHHHTHHHHHHHHH
T ss_pred             HHcCCCcceEEEEEccCEEEEEEEHHHHHHHHhhCHHHHHh
Confidence            99999999999999999999999999999999998866433

>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.73  E-value=1.4e-17  Score=140.39  Aligned_cols=119  Identities=19%  Similarity=0.327  Sum_probs=109.5

Q ss_pred             hhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccC-ce-eEEEEeCCCCeeehh
Q 038432          180 HTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEME-KE-IAVGTLQTGDMFGEV  257 (602)
Q Consensus       180 ~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~-~~-~~~~~l~~g~~fGe~  257 (602)
                      ++|+++|+|++++++.+..++..++.+.|.+|++|+++||.++.+|+|.+|.|+++....+ ++ ..+..+++|++||+.
T Consensus         2 ~~L~~i~~f~~L~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yii~~G~v~~~~~~~~~~~~~~~~~~~~g~~fG~~   81 (132)
T d1ne6a2           2 EFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEI   81 (132)
T ss_dssp             HHHHTSGGGGGSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECCEEEEEESSSSCCEEEEEEECTTCEECHH
T ss_pred             hhHhCCHhhhCCCHHHHHHHHHhCEEEEECCCCEEEEcCCcchHHHHHHhhhheeeccCCccccchhhhhccccceeeEe
Confidence            6899999999999999999999999999999999999999999999999999999875543 33 458899999999999


Q ss_pred             hhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHH
Q 038432          258 GALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVS  298 (602)
Q Consensus       258 ~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~  298 (602)
                      +++.+.+++.+++|.++++++.+++++|.+++..+|+...+
T Consensus        82 ~~~~~~~~~~t~~a~~~~~~~~i~~~~~~~ll~~~p~~~~~  122 (132)
T d1ne6a2          82 ALLMNRPRAATVVARGPLKCVKLDRPRFERVLGPCSDILKR  122 (132)
T ss_dssp             HHHHTSSCSSEEEESSCEEEEEEEHHHHHHHTGGGHHHHHH
T ss_pred             eecCCCceeEEEEEcccEEEEEEEHHHHHHHHHHCHHHHHH
Confidence            99999999999999999999999999999999999976433

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

Probab=99.73  E-value=1.9e-17  Score=139.67  Aligned_cols=121  Identities=23%  Similarity=0.331  Sum_probs=112.4

Q ss_pred             hhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehhhh
Q 038432          180 HTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGA  259 (602)
Q Consensus       180 ~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~~l  259 (602)
                      ++|+++|+|+++|++++..++..++.+.|++|++|+++|++++.+|+|.+|.|+++..+.      ..+.+|++||+.++
T Consensus        11 ~~l~~~p~F~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~I~~G~v~v~~~~~------~~l~~G~~~G~~~~   84 (133)
T d1vp6a_          11 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP------VELGPGAFFGEMAL   84 (133)
T ss_dssp             HHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSSC------EEECTTCEECHHHH
T ss_pred             HHHHCCCccccCCHHHHHHHHHhCEEEEECCCCEEEeCCCCCccceeeeccccEEEEeee------eeeccCcccccccc
Confidence            789999999999999999999999999999999999999999999999999999975433      25899999999999


Q ss_pred             hcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHh
Q 038432          260 LCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQ  306 (602)
Q Consensus       260 l~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~  306 (602)
                      +.+.++..+++|.+.|+++.+++++|.+++..+|+....+++.+.++
T Consensus        85 l~~~~~~~~~~a~~~~~i~~i~~~~~~~l~~~~p~~~~~~~~~~~~R  131 (133)
T d1vp6a_          85 ISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALER  131 (133)
T ss_dssp             HHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             cCCCcccceEEECCCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999998887766554

>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=7e-17  Score=140.07  Aligned_cols=135  Identities=17%  Similarity=0.228  Sum_probs=118.2

Q ss_pred             HHHhhCCHHHHHHHHHHhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEecc
Q 038432          160 QLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEM  239 (602)
Q Consensus       160 ~~l~~lp~~l~~~v~~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~  239 (602)
                      +.|+.-| .-|.+...+...++++++++|+.++++.+..++..++.+.|++|++|+++||.++.+|||.+|.|+++....
T Consensus         5 ~~L~k~p-~~Rt~~~~~~i~~~L~~~~~F~~l~~~~l~~l~~~~~~~~~~~ge~I~~~gd~~~~~y~I~~G~v~v~~~~~   83 (155)
T d1o7fa2           5 ACLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSET   83 (155)
T ss_dssp             HHHTSCS-TTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSS
T ss_pred             HHhcCCh-hhCCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEECCCCEEEeCCCcceeeEEEeccchheeeecc
Confidence            3455533 346666667777899999999999999999999999999999999999999999999999999999875332


Q ss_pred             ---CceeEEEEeCCCCeeehhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHH
Q 038432          240 ---EKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDN  296 (602)
Q Consensus       240 ---~~~~~~~~l~~g~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~  296 (602)
                         ++...+..+++|++||+ +++.+.+++.++++.++++++.+++++|.+++.++|+..
T Consensus        84 ~~~~~~~~v~~l~~g~~fGe-~~l~~~~~~~tv~a~~~~~l~~i~~~~f~~il~~~~~~~  142 (155)
T d1o7fa2          84 SSHQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYM  142 (155)
T ss_dssp             SCGGGCEEEEEECTTCEECG-GGGGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGT
T ss_pred             cccccccccccccccccchh-hhhcCCCceEEEEECCCEEEEEEeHHHHHHHHHHCHHHH
Confidence               35677899999999998 899999999999999999999999999999999988643

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=2e-16  Score=131.58  Aligned_cols=115  Identities=18%  Similarity=0.252  Sum_probs=103.7

Q ss_pred             hhHhhhhhhcccccCCHHHHHHHHHhcccee-cCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeee
Q 038432          177 LFLHTVEKVYLFKDVSKEIIVLLVAKMKAEY-IPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG  255 (602)
Q Consensus       177 ~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~-~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fG  255 (602)
                      ...+.|+++|+|+++|++.+.+|+..++.+. +++|++|+++||.++.+|+|.+|.|++...+.   .....+++|++||
T Consensus         7 ~i~~~L~~~~~F~~l~~~~l~~l~~~~~~~~~~~~ge~I~~~gd~~~~lyii~~G~v~~~~~~~---~~~~~~~~G~~fG   83 (124)
T d1o7fa3           7 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK---GVVCTLHEGDDFG   83 (124)
T ss_dssp             HHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTT---EEEEEEETTCEEC
T ss_pred             HHHHHHhCCHhhhcCCHHHHHHHHhhCeEEEEcCCCCEEEECCCcCceEEEEEcceEEEEEeee---eecccccCCcchh
Confidence            4567899999999999999999999998755 56899999999999999999999999986443   4567889999999


Q ss_pred             hhhhhcCCCceeEEEEcce-eEEEEeeHHHHHHHHHhChH
Q 038432          256 EVGALCCRPQIYTYRTKTL-SQLLRLKTSALIEAMQSKQE  294 (602)
Q Consensus       256 e~~ll~~~~~~~tv~a~~~-~~l~~l~~~~~~~~l~~~~~  294 (602)
                      +.+++.+.+++.+++|.+. |.++.+++++|.++++++|+
T Consensus        84 e~~ll~~~~r~~t~~a~~~~~~l~~i~~~~f~~il~~~~~  123 (124)
T d1o7fa3          84 KLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEA  123 (124)
T ss_dssp             GGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTC
T ss_pred             hhHhhCCCceeeEEEEEeCcEEEEEEcHHHHHHHHhhccC
Confidence            9999999999999999986 89999999999999998874

>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable transcription regulator BT4300, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.70  E-value=2.9e-16  Score=134.96  Aligned_cols=133  Identities=10%  Similarity=0.149  Sum_probs=119.2

Q ss_pred             HhhhhhhcccccCCHHHHHHHHHhcc--ceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeee
Q 038432          179 LHTVEKVYLFKDVSKEIIVLLVAKMK--AEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFG  255 (602)
Q Consensus       179 ~~~l~~~~~f~~~s~~~l~~l~~~~~--~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fG  255 (602)
                      .+.|.++|+|++++++.+..|+..++  .+.|.+|++|+.+||+++.+|||.+|.|+++... ++++..+..+.+|++||
T Consensus         5 ~d~L~~~~lF~~l~~~~~~~ll~~~~~~~~~~~~g~~i~~~g~~~~~iy~i~~G~v~v~~~~~~g~~~~~~~~~~g~~fG   84 (147)
T d1zyba2           5 FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIE   84 (147)
T ss_dssp             HTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEEC
T ss_pred             HHHHhCCcccccCCHHHHHHHHhhCceEEEEECCCCEEEeccCCccEEEEEecceEEEEEEcCCCCEEEEEEcCCCCEec
Confidence            46889999999999999999998876  4679999999999999999999999999998754 45778899999999999


Q ss_pred             hhhhhcCCCc-eeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhhhh
Q 038432          256 EVGALCCRPQ-IYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLK  311 (602)
Q Consensus       256 e~~ll~~~~~-~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~~~  311 (602)
                      +.+++.+.++ +.++.+.+.|.++.+++..|.+++..+|.....+++.+..+...+.
T Consensus        85 e~~~~~~~~~~~~~v~a~~~~~vl~i~~~~~~~~~~~~p~~~~~~~~~ls~r~~~l~  141 (147)
T d1zyba2          85 PQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLY  141 (147)
T ss_dssp             GGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhcccccccceeeecceeeeeehhHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence            9999988775 7899999999999999999999999999999888887777665543

>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.69  E-value=3.5e-17  Score=138.50  Aligned_cols=114  Identities=14%  Similarity=0.213  Sum_probs=100.4

Q ss_pred             hhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccC--ceeEEEEeCCCCeeehh
Q 038432          180 HTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEME--KEIAVGTLQTGDMFGEV  257 (602)
Q Consensus       180 ~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~--~~~~~~~l~~g~~fGe~  257 (602)
                      ..|+++|+|++++++++.+|+..++.+.|+||++|+++||+++.+|||.+|.|+++...++  .......+++|++|||.
T Consensus         6 s~l~~vp~F~~l~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~ly~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGE~   85 (137)
T d1wgpa_           6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE   85 (137)
T ss_dssp             CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred             HHHHCCHhHhCCCHHHHHHHHHhcEEEEECCCCEEEecccccceeehhccCceEEEEecCCCceeeeeeeccCCcEEcch
Confidence            4689999999999999999999999999999999999999999999999999999865443  33557789999999999


Q ss_pred             hhhc---------CCCceeEEEEcceeEEEEeeHHHHHHHHHhCh
Q 038432          258 GALC---------CRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQ  293 (602)
Q Consensus       258 ~ll~---------~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~  293 (602)
                      +++.         ..+++++++|.++|+++.+.+++|.+++.+++
T Consensus        86 ~ll~~~~~~~~~~~~~r~~tv~a~t~~~l~~L~~~dl~~il~~~~  130 (137)
T d1wgpa_          86 LLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFR  130 (137)
T ss_dssp             HHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHC
T ss_pred             hHhccCCCcccccccccCcEEEEeeeEEEEEEEHHHHHHHHHHhc
Confidence            8863         22456799999999999999999999887654

>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Transcriptional regulator PG0396, N-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

Probab=99.63  E-value=2.3e-15  Score=128.43  Aligned_cols=124  Identities=12%  Similarity=0.150  Sum_probs=112.3

Q ss_pred             ccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehhhhhcCCCc
Q 038432          187 LFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEVGALCCRPQ  265 (602)
Q Consensus       187 ~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~~ll~~~~~  265 (602)
                      +|+.++++.+..+...++.+.|++|++|+.+|++++.+|+|.+|.|+++..+ ++++.++..+++|++||+.+++.+.++
T Consensus         8 lf~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~ly~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~~   87 (142)
T d2gaua2           8 VWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAEETC   87 (142)
T ss_dssp             HHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHHTSCC
T ss_pred             HHccCCHHHHHHHHhcCEEEEECCCCEEEeCCCccceEEEEEecceeeEeeccccceeeeecccccchhhhhhhhccCCc
Confidence            6899999999999999999999999999999999999999999999999644 446788899999999999999999999


Q ss_pred             eeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhhh
Q 038432          266 IYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKL  310 (602)
Q Consensus       266 ~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~~  310 (602)
                      ..+++|.+++.++.++.+.+.+++.++|.....+++.+.++....
T Consensus        88 ~~~~~a~~~s~v~~i~~~~~~~l~~~~~~~~~~~~~~l~~rl~~~  132 (142)
T d2gaua2          88 SSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKELGYA  132 (142)
T ss_dssp             SSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             eeEEEecCCEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988888776665443

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=4.1e-14  Score=118.89  Aligned_cols=118  Identities=18%  Similarity=0.299  Sum_probs=106.2

Q ss_pred             CHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehhhhhcC-CCceeEE
Q 038432          192 SKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEVGALCC-RPQIYTY  269 (602)
Q Consensus       192 s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~~ll~~-~~~~~tv  269 (602)
                      |++.++.+...++.+.|++|++|+++||+.+.+|||.+|.|+++..+ .+++..+..+.+|++||+.+++.+ .++..++
T Consensus         2 sd~~le~l~~~~~~~~~~~g~~i~~~g~~~~~iy~i~~G~v~~~~~~~~g~e~~l~~~~~G~~~G~~~~~~~~~~~~~~~   81 (132)
T d1i5za2           2 TDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWV   81 (132)
T ss_dssp             CCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEECCEEEEEECTTCCEEEEEEECTTCEESCTTTTSSSCBCCSEE
T ss_pred             CHHHHHHHHHhCEEEEECcCCEEEcCCCCCCEEEEEEEccceeeeccccchhhhhhhhCcccccchHHHhcCCccceEEE
Confidence            56788999999999999999999999999999999999999998654 457888999999999999988875 6779999


Q ss_pred             EEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432          270 RTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK  309 (602)
Q Consensus       270 ~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~  309 (602)
                      +|.+.|.++.++.+.|.+++..+|.....+++.+.++...
T Consensus        82 ~a~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~l~~rl~~  121 (132)
T d1i5za2          82 RAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQV  121 (132)
T ss_dssp             EESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHH
T ss_pred             EEccceEEEEEcHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998888877665544

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.54  E-value=8.4e-14  Score=117.15  Aligned_cols=117  Identities=18%  Similarity=0.296  Sum_probs=103.2

Q ss_pred             HHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehhhhhcC----CCceeE
Q 038432          194 EIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEVGALCC----RPQIYT  268 (602)
Q Consensus       194 ~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~~ll~~----~~~~~t  268 (602)
                      +.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++... ++++..+..+.+|++||+.+++.+    .+++.+
T Consensus         3 ~~le~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~~   82 (134)
T d2oz6a2           3 KHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERSAW   82 (134)
T ss_dssp             HHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBCCSE
T ss_pred             HHHHHHHHhCEEEEECCCCEEEeCCCcCCEEEEEEEcccceeeeecccccceeeeccCCCccchHHHhcCccccccceeE
Confidence            457888999999999999999999999999999999999998654 457888999999999999998864    357789


Q ss_pred             EEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhhh
Q 038432          269 YRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKL  310 (602)
Q Consensus       269 v~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~~  310 (602)
                      ++|.+.|+++.++.+.|.+++..+|+....+++.+..+....
T Consensus        83 ~~a~~~~~vl~i~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~  124 (134)
T d2oz6a2          83 VRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKT  124 (134)
T ss_dssp             EEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988888776665543

>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: CO-sensing protein CooA, N-terminal domain
domain: CO-sensing protein CooA, N-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=99.52  E-value=1.6e-14  Score=121.17  Aligned_cols=119  Identities=11%  Similarity=0.088  Sum_probs=109.1

Q ss_pred             hhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehhhhhcCC
Q 038432          184 KVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCR  263 (602)
Q Consensus       184 ~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~~ll~~~  263 (602)
                      +.++|+.++++.++.+...++.+.|.+|++|+.+|+.++++|+|.+|.++++..+++++..+..+.+|++||+.      
T Consensus         3 r~~~~~~L~~~~~~~~~~~~~~~~~~kG~~i~~~g~~~~~ly~v~~G~v~~~~~~~g~e~~l~~~~~g~~f~~~------   76 (132)
T d1ft9a2           3 RFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFCMH------   76 (132)
T ss_dssp             CCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEESC------
T ss_pred             CcChhHhCCHHHHHHHHHhCEEEEecCCcEEECCCCCCCEEEEEEeCeEeeeccccccceeecccccccccccc------
Confidence            46788999999999999999999999999999999999999999999999998777888899999999999874      


Q ss_pred             CceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432          264 PQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK  309 (602)
Q Consensus       264 ~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~  309 (602)
                       .+++++|.++|+++.++++.|.+++.++|.....+++.+..+...
T Consensus        77 -~~~~v~A~~~s~v~~i~~~~~~~ll~~~p~~~~~l~~~l~~rl~~  121 (132)
T d1ft9a2          77 -SGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRALTS  121 (132)
T ss_dssp             -SSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             -ccccceeccceeeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             467899999999999999999999999999999988887766554

>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Chlorophenol reduction protein CprK
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=99.50  E-value=9.4e-14  Score=117.59  Aligned_cols=126  Identities=11%  Similarity=0.036  Sum_probs=111.0

Q ss_pred             hhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehhhhh
Q 038432          182 VEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEVGAL  260 (602)
Q Consensus       182 l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~~ll  260 (602)
                      ...+..+.-++.+.++.++...+.+.|++|++|+.+||+++.+|||.+|.|+++... ++++.++..+++|++||+..  
T Consensus         3 ~~~~~p~~~~p~e~l~~l~~~~~~~~y~kg~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~l~~~~~g~~~g~~~--   80 (139)
T d3e5ua2           3 CGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGKLY--   80 (139)
T ss_dssp             CCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCCS--
T ss_pred             hhhcCCCCCCCHHHHHHHHHhCEEEEECCCCEEEeCCCCCCEEEEEEeccceEEEeeccccccceeeccccceeehhh--
Confidence            445556777888889999999999999999999999999999999999999998654 45788999999999999854  


Q ss_pred             cCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhhh
Q 038432          261 CCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKL  310 (602)
Q Consensus       261 ~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~~  310 (602)
                       ..++..++.|.++++++.++++.|.++++.+|+....+++.+..+....
T Consensus        81 -~~~~~~~~~a~~~~~v~~i~~~~f~~l~~~~p~l~~~il~~~~~r~~~~  129 (139)
T d3e5ua2          81 -PTGNNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAYY  129 (139)
T ss_dssp             -CCSCEEEEEESSCEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHHHHH
T ss_pred             -hhcccccccccccceEEEeeHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence             4567889999999999999999999999999999999999887775443

>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: CRP-like transcriptional regulator TM1171, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.47  E-value=2.5e-13  Score=113.47  Aligned_cols=114  Identities=15%  Similarity=0.193  Sum_probs=101.4

Q ss_pred             HHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEE-eccCceeEEEEeCCCCeeehhhhhcCCCc-eeEEEEcc
Q 038432          196 IVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMID-YEMEKEIAVGTLQTGDMFGEVGALCCRPQ-IYTYRTKT  273 (602)
Q Consensus       196 l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~-~~~~~~~~~~~l~~g~~fGe~~ll~~~~~-~~tv~a~~  273 (602)
                      +++++...+.+.|++|++|+++||+++.+|+|.+|.++++. ..++++..+..+++|++||+.+++.+.++ +.+++|.+
T Consensus         3 l~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~   82 (129)
T d1o5la1           3 LKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSEPRFPVNVVAGE   82 (129)
T ss_dssp             GGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSSCBCSSEEEESS
T ss_pred             HHHHHhCCEEEEECCCCEEEECCCcCcEEEEEeccccEEEEeecccccchhhhcccccccchHHHhccCCCccEEEEeec
Confidence            35677888999999999999999999999999999999976 44557888999999999999999988875 68999999


Q ss_pred             eeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432          274 LSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK  309 (602)
Q Consensus       274 ~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~  309 (602)
                      +++++.++.+.|.+++..+|+....+++.+..+...
T Consensus        83 ~~~vl~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  118 (129)
T d1o5la1          83 NSKILSIPKEVFLDLLMKDRELLLFFLKDVSEHFRV  118 (129)
T ss_dssp             SEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             ccEEEEEcHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988888877665443

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.47  E-value=9.1e-14  Score=109.75  Aligned_cols=59  Identities=27%  Similarity=0.448  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 038432           56 RYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTR  114 (602)
Q Consensus        56 ~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~~~  114 (602)
                      .|.+|+||+++|+||+||||+.|.|..+|+++++++++|+.+++++++.+...+.+..+
T Consensus        40 s~~~aly~~~vT~tTvGYGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~   98 (103)
T d1r3jc_          40 TYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ   98 (103)
T ss_dssp             SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhheeeecccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48899999999999999999999999999999999999999999999999987766543

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

Probab=99.34  E-value=2.3e-12  Score=104.35  Aligned_cols=55  Identities=20%  Similarity=0.343  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038432           56 RYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVV  110 (602)
Q Consensus        56 ~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~  110 (602)
                      .|.+|+||++.|+||+||||+.|.+..+++++++.+++|++++++++|.+...+.
T Consensus        60 ~~~~a~yfs~~T~tTvGYGDi~P~t~~~r~~~~~~~~~G~~~~a~~~g~i~~~fs  114 (116)
T d1xl4a2          60 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT  114 (116)
T ss_dssp             CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5889999999999999999999999999999999999999999999998876543

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=99.21  E-value=6.8e-12  Score=101.42  Aligned_cols=54  Identities=22%  Similarity=0.435  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038432           56 RYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLV  109 (602)
Q Consensus        56 ~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~  109 (602)
                      .|.+|+||++.|+||+||||+.|.+..+++++++.+++|.+++++++|.+..-+
T Consensus        61 ~~~~a~yfs~~T~tTvGYGDi~P~t~~~~~~~~~~~~~g~~~~a~~~g~i~~~~  114 (116)
T d1p7ba2          61 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARF  114 (116)
T ss_dssp             STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999887644

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=98.92  E-value=2.5e-11  Score=90.37  Aligned_cols=51  Identities=25%  Similarity=0.637  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038432           57 YISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTN  107 (602)
Q Consensus        57 Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~  107 (602)
                      |.+|+||++.|+||+||||+.|.|..+|+++++++++|..++++.++.+.+
T Consensus        28 ~~dalyf~~~T~tTiGyGD~~P~t~~~r~~~~~~~l~g~~~~~~~i~~i~~   78 (80)
T d1lnqa2          28 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLE   78 (80)
T ss_dssp             SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTT
T ss_pred             HHHHHHHHhhheeeccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            557999999999999999999999999999999999999999999998764

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.72  E-value=1.9e-05  Score=52.27  Aligned_cols=46  Identities=28%  Similarity=0.422  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCCchHHHHHHHHHHHHHHHhhccc
Q 038432           12 RFCDIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGY   73 (602)
Q Consensus        12 ~~~~l~~~H~~aC~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~Y~~s~ywa~~t~~tvGy   73 (602)
                      .+.+++++-.++++.|++-...                .++.+....+++||+++|||||||
T Consensus        12 ~~~~~i~i~~~s~~~y~~E~~~----------------~~~~f~sip~a~WWaivT~TTVGY   57 (57)
T d2h8pc1          12 TVLLVIVLLAGSYLAVLAERGA----------------PGAQLITYPRALWWACETATTVGY   57 (57)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTS----------------TTCCCCSHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHhcCC----------------CCccccccchhhhhheeeeecccC
Confidence            3335555556777777664321                112244577999999999999998

>d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: Listeriolysin regulatory protein PrfA, N-terminal domain
domain: Listeriolysin regulatory protein PrfA, N-terminal domain
species: Bacteria (Listeria monocytogenes) [TaxId: 1639]

Probab=91.02  E-value=1.8  Score=30.63  Aligned_cols=102  Identities=11%  Similarity=0.121  Sum_probs=75.2

Q ss_pred             HhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehhhhhcCCCc--eeEEEE-cceeEE
Q 038432          201 AKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQ--IYTYRT-KTLSQL  277 (602)
Q Consensus       201 ~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~~ll~~~~~--~~tv~a-~~~~~l  277 (602)
                      ..+++..|.+.|+|+.+=|+.....|+..|..++.....+....--.+-.|.+.=..+++.....  -+.... .+....
T Consensus         9 ngikpk~f~kke~ifnqwdp~eycifl~dgiakltsiseng~imnlqyykgafiimsg~idt~~~lgyynlevise~ata   88 (131)
T d2bgca2           9 NGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATA   88 (131)
T ss_dssp             TTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEEESSEEEESBCTTTCCBSCCCEEEECSSEEEE
T ss_pred             cCCChhhhchhheeecccCcceeEEeeecchHHhcccccCCcEEeeeeccccEEEEecccccCCccceeeeeeehhccee
Confidence            34678999999999999999999999999999998766655555556677887766666654432  233333 345677


Q ss_pred             EEeeHHHHHHHHHhChHHHHHHHHH
Q 038432          278 LRLKTSALIEAMQSKQEDNVSILKN  302 (602)
Q Consensus       278 ~~l~~~~~~~~l~~~~~~~~~il~~  302 (602)
                      +.+.-.++.+++..+-...-.++..
T Consensus        89 yvikisdlk~lvs~dl~~~fyi~~t  113 (131)
T d2bgca2          89 YVIKINELKELLSKNLTHFFYVFQT  113 (131)
T ss_dssp             EEEEHHHHHHHHHHCHHHHHHHHHH
T ss_pred             eeEEHHHHHHHHHHhHHHHHHHHHH
Confidence            8899999999988876655444444