Citrus Sinensis ID: 038446

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-
Protein Sequence
MGALSTQTQGLKASSTAIFNQKFSSSEKTSASFRLSLFKNPISDFSGFSSKQSSFLGFSLNHVRRKHRGLVVSPCCVLPLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTETGLELNEENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVMTVRVALTQKLREKIPSIAAVQLID
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHccccccccccccccccEEEEccccccccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccccccccccEEEEEEEccEEEEEEcccccccccHHHHHHHHHHHHHHHHcccccEEEEcccccccccHHHHHHHHHHHHHcccccccccccEEEEEEcccEEEEEEcccccHHHHHHHHHHHHHHHHccccEEEEEcc
Secondary Structure Prediction (SSPRO)
cccEccEEEEEEcccEEEEEcHccccccccHHHccHHHHHHHHHHHHHcccccEEEcccccccccccccccccccEcccccHHHHHHHHHHHcHHHHHccccEEEEEccccEEEEEEEcccccccccHHHHHHHHHHHHHHHcHHHEEEEEcccccccccccHHHHHHHHHHccHHHccccccEEEEEEEcccEEEEEEcccHHHHHHHHHHHHHHHHHHcHHHHEEEEcc
Coil and Loop (DISEMBL)
mgalstqtqglkasstaifnqkfsssektsASFRLSlfknpisdfsgfsskqssfLGFSLnhvrrkhrglvvspccvlplteeNVERVLDEVrpglmadggnvalhEIDGLVVVLKLQgacgscpsstmtlKMGIETRLRDKIPEILEVEQILdtetglelNEENIEKVLAEIRPylagtgggileliQIDDYVVRVRLSGPAAGVMTVRVALTQKLREKIPSIAAVQLID
Flexible Loop (DISEMBL)
mgalstqtqglkasstaifnqkfsssEKTSASFRLSLFKNPISDFSGFSSKQSSFLGFSLNHVRRKHRGLVVSPCCVLPLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGscpsstmtlkmGIETRLRDKIPEILEVEQildtetglelnEENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVMTVRVALTqklrekipsiaavqlid
Low Complexity Region (SEG)
MGALSTQTQGLKASSTAIFNQKFSSSEKTSASFRLSLFKNPIsdfsgfsskqssflgfslNHVRRKHRGLVVSPCCVLPLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTETGLELNEENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVMTVRVALTQKLREKIPSIAAVQLID
Disordered region (IsUnstruct)
*************************************F***************SFLGFSLNHVRRKHRGLVVSPCCVLPLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTETGLELNEENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVMTVRVALTQKLREKIPSIAAV****
Disordered Region (DISOPRED)
***************TAIFNQKFSSSEKTSASFRLSLFKNPISDFSGFSSKQSSFLGFSLNHVR****************TEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTETGLELN****************GTGGGILELIQIDDYVVRVRLSGPAAGVMTVRVALTQKLREKIPSIAAVQLID
Disordered Region (DISEMBL)
*************SSTAIFNQK********ASFRLSLFKNPISDFSGFSSKQSSFLGFSLNHVRRKHRGLVVSPCCVLPLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTETGLELNEENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVMTVRVALTQKLREKIPSIAAVQLID
Disordered Region (DISPRO)
*GALSTQTQGLKASSTAIFNQKFSSSEKTSASFRLSLFKNPISDFSGFSSKQSSFLGF****************CCVLPLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTETGLELNEENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVMTVRVALTQKLREKIPSIAAVQLID
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGALSTQTQGLKASSTAIFNQKFSSSEKTSASFRLSLFKNPISDFSGFSSKQSSFLGFSLNHVRRKHRGLVVSPCCVLPLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTETGLELNEENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVMTVRVALTQKLREKIPSIAAVQLID
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	231	2.2.26 [Sep-21-2011]
Q84RQ7	236	NifU-like protein 3, chlo	yes	no	0.969	0.949	0.674	1e-79
Q93W20	235	NifU-like protein 2, chlo	no	no	0.770	0.757	0.7	5e-64
Q84LK7	226	NifU-like protein 1, chlo	no	no	0.662	0.676	0.692	1e-53
Q93W77	231	NifU-like protein 1, chlo	no	no	0.597	0.597	0.375	2e-19
P33179	112	Nitrogen fixation protein	N/A	no	0.294	0.607	0.608	1e-16
Q43885	300	Nitrogen fixation protein	no	no	0.294	0.226	0.594	2e-15
P20628	300	Nitrogen fixation protein	no	no	0.294	0.226	0.594	2e-15
B4H303	282	NFU1 iron-sulfur cluster	N/A	no	0.428	0.351	0.407	2e-12
B5DKJ8	286	NFU1 iron-sulfur cluster	yes	no	0.428	0.346	0.407	4e-12
Q8SY96	283	NFU1 iron-sulfur cluster	yes	no	0.406	0.332	0.4	5e-12

>sp|Q84RQ7|NIFU3_ARATH NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=NIFU3 PE=2 SV=1

 Score =  296 bits (757), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 164/243 (67%), Positives = 190/243 (78%), Gaps = 19/243 (7%)

Query: 1   MGALSTQTQGLKASSTAIFNQKFSSSEKTSASFRLSLF--KNPISDFSGFSSKQSSFL-- 56
           MG++S QT+          N   S++EK + +FR SL   KN ISD  G SSK S+FL  
Sbjct: 1   MGSVSGQTR------ITTMNLSLSTAEK-NPNFRSSLLNSKNAISDTLGVSSKCSTFLRG 53

Query: 57  -----GFS-LNHVRR-KHRGLVVSPCCVLPLTEENVERVLDEVRPGLMADGGNVALHEID 109
                 FS L H R  + R +     CV+PLTEENVERVLDEVRP LMADGGNVALHEID
Sbjct: 54  QFQRIHFSWLQHTRPLRKRTVFGHVSCVMPLTEENVERVLDEVRPSLMADGGNVALHEID 113

Query: 110 GLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTET-GLELNEENIEK 168
           GLVVVLKLQGACGSCPSS+MTLKMGIE+RLRDKIPEI+ VEQ L++ET GLELN+ENIEK
Sbjct: 114 GLVVVLKLQGACGSCPSSSMTLKMGIESRLRDKIPEIMSVEQFLESETGGLELNDENIEK 173

Query: 169 VLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVMTVRVALTQKLREKIPSIAAVQ 228
           VL+E+RPYL+GTGGG LEL++ID YVV+VRL+GPAAGVMTVRVALTQKLRE IPSI AVQ
Sbjct: 174 VLSELRPYLSGTGGGGLELVEIDGYVVKVRLTGPAAGVMTVRVALTQKLRETIPSIGAVQ 233

Query: 229 LID 231
           L++
Sbjct: 234 LLE 236

Molecular scaffold for [Fe-S] cluster assembly of chloroplastic iron-sulfur proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93W20|NIFU2_ARATH NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=NIFU2 PE=1 SV=1

 Score =  244 bits (622), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 126/180 (70%), Positives = 146/180 (81%), Gaps = 2/180 (1%)

Query: 53  SSFLGFSLNHVRRKHRGLVVSPCCVL--PLTEENVERVLDEVRPGLMADGGNVALHEIDG 110
           S FL       R K    V +P  +L  PLTEENVE VLDE+RP LM+DGGNVALHEIDG
Sbjct: 56  SRFLSSRQLFRRSKVVKAVATPDPILEVPLTEENVESVLDEIRPYLMSDGGNVALHEIDG 115

Query: 111 LVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTETGLELNEENIEKVL 170
            +V +KLQGACGSCPSSTMT+KMGIE RL +KIPEI+ VE + D ETGLELNEENIEKVL
Sbjct: 116 NIVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEETGLELNEENIEKVL 175

Query: 171 AEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVMTVRVALTQKLREKIPSIAAVQLI 230
            EIRPYL GT  G L+L++I+D +V++R++GPAAGVMTVRVA+TQKLREKIPSIAAVQLI
Sbjct: 176 EEIRPYLIGTADGSLDLVEIEDPIVKIRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLI 235

Molecular scaffold for [Fe-S] cluster assembly of chloroplastic iron-sulfur proteins. Required for biogenesis of ferredoxin, a major photosynthetic electron carrier containing [2Fe-2S] cluster. Required for the assembly of photosystem I complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84LK7|NIFU1_ORYSJ NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=NIFU1 PE=1 SV=1

 Score =  209 bits (532), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 106/153 (69%), Positives = 125/153 (81%)

Query: 78  LPLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIET 137
           LPLT  NVE VLD+VRP L ADGG+VALHEI G VV LKLQGACGSCPSS +T+K GIE 
Sbjct: 73  LPLTAGNVESVLDQVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIER 132

Query: 138 RLRDKIPEILEVEQILDTETGLELNEENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRV 197
           RL +KIP++  VE + D ETGLELNEEN+EKVL EIRPYLAGTGGG L+ + I   +V+V
Sbjct: 133 RLMEKIPDVAAVEPVTDKETGLELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKV 192

Query: 198 RLSGPAAGVMTVRVALTQKLREKIPSIAAVQLI 230
           RL+GPAA V TVR+A+++KLREKIPSI  VQL+
Sbjct: 193 RLTGPAAVVRTVRIAVSKKLREKIPSIQIVQLL 225

Molecular scaffold for [Fe-S] cluster assembly of chloroplastic iron-sulfur proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q93W77|NIFU1_ARATH NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=NIFU1 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 88/141 (62%), Gaps = 3/141 (2%)

Query: 80  LTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRL 139
           LT +NV+ VL++VRP L++DGGNV +  ++  VV LKLQGAC SCPSS+ T+ MGIE  L
Sbjct: 85  LTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIERVL 144

Query: 140 RDKIPEIL-EVEQILDTETGLELNEENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRVR 198
           ++K  + L ++ Q+ D E   ++  E +   L  +RP +   GG + E++ ++     V+
Sbjct: 145 KEKFGDALKDIRQVFDEEVK-QITVEAVNAHLDILRPAIKNYGGSV-EVLSVEGEDCVVK 202

Query: 199 LSGPAAGVMTVRVALTQKLRE 219
             GP +  M ++ A+ +K ++
Sbjct: 203 YVGPESIGMGIQAAIKEKFKD 223

Molecular scaffold for [Fe-S] cluster assembly of chloroplastic iron-sulfur proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|P33179|NIFU_ANASL Nitrogen fixation protein NifU (Fragment) OS=Anabaena sp. (strain L31) GN=nifU PE=3 SV=1

 Score = 86.7 bits (213), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/69 (60%), Positives = 56/69 (81%), Gaps = 1/69 (1%)

Query: 85  VERVLDE-VRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKI 143
           +++VLDE VRP L+ADGG+V L+++DG +V + LQGACGSCPSST TLK+ IE+RLRD+I
Sbjct: 44  IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCPSSTATLKIAIESRLRDRI 103

Query: 144 PEILEVEQI 152
              L VE +
Sbjct: 104 NPSLVVEAV 112

May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.

Anabaena sp. (strain L31) (taxid: 29412)

>sp|Q43885|NIFU_TRIAZ Nitrogen fixation protein NifU OS=Trichormus azollae GN=nifU PE=3 SV=1

 Score = 82.4 bits (202), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 55/69 (79%), Gaps = 1/69 (1%)

Query: 85  VERVLDE-VRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKI 143
           +++VLDE VRP L+ADGG+V L+++DG +V + LQGACGSC SST TLK+ IE+RLRD+I
Sbjct: 232 IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRI 291

Query: 144 PEILEVEQI 152
              L VE +
Sbjct: 292 NPSLVVEAV 300

May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.

Anabaena azollae (taxid: 1164)

>sp|P20628|NIFU_NOSS1 Nitrogen fixation protein NifU OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=nifU PE=3 SV=1

 Score = 82.4 bits (202), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 55/69 (79%), Gaps = 1/69 (1%)

Query: 85  VERVLDE-VRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKI 143
           +++VLDE VRP L+ADGG+V L+++DG +V + LQGACGSC SST TLK+ IE+RLRD+I
Sbjct: 232 IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRI 291

Query: 144 PEILEVEQI 152
              L VE +
Sbjct: 292 NPSLVVEAV 300

May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|B4H303|NFU1_DROPE NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila persimilis GN=GL13432 PE=3 SV=1

 Score = 72.4 bits (176), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 60/103 (58%), Gaps = 4/103 (3%)

Query: 85  VERVLD-EVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKI 143
           ++ +LD  +RP +  DGG++     +  VV LK+QG+C SCPSS +TLK G++  L+  I
Sbjct: 178 IKELLDTRIRPTVQEDGGDIVFISYENGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYI 237

Query: 144 PEILEVEQILDTETGLELNE-ENIEKVLAEIRPYLA--GTGGG 183
           PE+  VEQ+ D    +   E E  EK L +  P  A  G GGG
Sbjct: 238 PEVESVEQVFDDADRMADKEFERFEKNLKQKEPAGAPVGIGGG 280

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.

Drosophila persimilis (taxid: 7234)

>sp|B5DKJ8|NFU1_DROPS NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=GA22888 PE=3 SV=1

 Score = 71.6 bits (174), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 60/103 (58%), Gaps = 4/103 (3%)

Query: 85  VERVLD-EVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKI 143
           ++ +LD  +RP +  DGG++     +  VV LK+QG+C SCPSS +TLK G++  L+  I
Sbjct: 182 IKELLDTRIRPTVQEDGGDIVFISYENGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYI 241

Query: 144 PEILEVEQILDTETGLELNE-ENIEKVLAEIRPYLA--GTGGG 183
           PE+  VEQ+ D    +   E E  EK L +  P  A  G GGG
Sbjct: 242 PEVESVEQVFDDVDRMADKEFERFEKNLKQKEPAGAPVGIGGG 284

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q8SY96|NFU1_DROME NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila melanogaster GN=CG32500 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 11/105 (10%)

Query: 85  VERVLD-EVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKI 143
           ++ +LD  +RP +  DGG++     +G VV LK+QG+C SCPSS +TLK G++  L+  I
Sbjct: 182 IKELLDTRIRPTVQEDGGDIVFMGYEGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYI 241

Query: 144 PEILEVEQILD-----TETGLELNEENIEKVLAEIRPYLAGTGGG 183
           PE+  VEQ+ D      E+  E  E+N+ K L +  P    +GGG
Sbjct: 242 PEVESVEQVFDEADRMIESEFERFEKNL-KTLKQQEP----SGGG 281

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
255582605	220	Nitrogen fixation protein nifU, putative	0.909	0.954	0.775	6e-92
225446006	237	PREDICTED: nifU-like protein 3, chloropl	0.913	0.890	0.765	2e-88
449461189	227	PREDICTED: nifU-like protein 3, chloropl	0.974	0.991	0.741	4e-87
118487917	224	unknown [Populus trichocarpa]	0.913	0.941	0.740	5e-87
357449361	242	NifU-like protein [Medicago truncatula]	0.987	0.942	0.705	3e-85
356556204	236	PREDICTED: nifU-like protein 3, chloropl	0.948	0.927	0.702	4e-85
356530300	235	PREDICTED: nifU-like protein 3, chloropl	0.952	0.936	0.7	3e-83
224126127	167	predicted protein [Populus trichocarpa]	0.718	0.994	0.885	3e-80
297803520	238	hypothetical protein ARALYDRAFT_492226 [	0.969	0.941	0.677	1e-79
18416645	236	NifU-like protein 3 [Arabidopsis thalian	0.969	0.949	0.674	7e-78

>gi|255582605|ref|XP_002532084.1| Nitrogen fixation protein nifU, putative [Ricinus communis] gi|223528244|gb|EEF30298.1| Nitrogen fixation protein nifU, putative [Ricinus communis]

 Score =  342 bits (878), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 173/223 (77%), Positives = 189/223 (84%), Gaps = 13/223 (5%)

Query: 19  FNQKFSSSEKTSASFRLSLFKNPISDFSGFSSKQSSFL----------GFSLNHVRRKHR 68
            N   S SE+T     LSLFK P+SDF  FSS++++FL             LN   RK  
Sbjct: 1   MNPSLSLSERTHC---LSLFKKPVSDFCIFSSRKNAFLRGQFHIRHFSSIKLNRAPRKFA 57

Query: 69  GLVVSPCCVLPLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSST 128
           GLVVSP CVLPLTEENVE+VLDEVRPGLMADGGNV LHEIDGLVVVLKLQGACGSCPSST
Sbjct: 58  GLVVSPSCVLPLTEENVEKVLDEVRPGLMADGGNVVLHEIDGLVVVLKLQGACGSCPSST 117

Query: 129 MTLKMGIETRLRDKIPEILEVEQILDTETGLELNEENIEKVLAEIRPYLAGTGGGILELI 188
           MTLKMGIETRLRDKIPEI+ VEQILDTETGLELN+EN+EKVLAEIRPYLAGTGGG+LEL+
Sbjct: 118 MTLKMGIETRLRDKIPEIMAVEQILDTETGLELNDENVEKVLAEIRPYLAGTGGGVLELV 177

Query: 189 QIDDYVVRVRLSGPAAGVMTVRVALTQKLREKIPSIAAVQLID 231
           QIDDY+V+VRLSGPAAGVMTVRVALTQKLR+KIP+IAAVQLID
Sbjct: 178 QIDDYIVKVRLSGPAAGVMTVRVALTQKLRDKIPAIAAVQLID 220

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446006|ref|XP_002268218.1| PREDICTED: nifU-like protein 3, chloroplastic [Vitis vinifera] gi|297735420|emb|CBI17860.3| unnamed protein product [Vitis vinifera]

 Score =  330 bits (847), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 170/222 (76%), Positives = 186/222 (83%), Gaps = 11/222 (4%)

Query: 20  NQKFSSSEKTSASFRLSLFKNPISDFSGFSSKQSSF----------LGFSLNHVRRKHRG 69
           N  F SS    +S  LS+ K PISD S FSS+ +SF          LG     V+ +  G
Sbjct: 16  NSSFPSSLWIPSS-HLSISKKPISDCSAFSSRDNSFMRGQFQSRHLLGCCSRRVQSRRAG 74

Query: 70  LVVSPCCVLPLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTM 129
           ++V P CVLPLTEENVE+VLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTM
Sbjct: 75  ILVLPSCVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTM 134

Query: 130 TLKMGIETRLRDKIPEILEVEQILDTETGLELNEENIEKVLAEIRPYLAGTGGGILELIQ 189
           TLKMGIETRLRDKIPEI  VEQILDTETGLELNEEN+EKVLAEIRPYLAGTGGG+LEL+Q
Sbjct: 135 TLKMGIETRLRDKIPEIEAVEQILDTETGLELNEENVEKVLAEIRPYLAGTGGGVLELVQ 194

Query: 190 IDDYVVRVRLSGPAAGVMTVRVALTQKLREKIPSIAAVQLID 231
           I+DYV++VRLSGPAAGVMTVRVALTQKLREKIP+IAAVQLID
Sbjct: 195 INDYVIKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLID 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461189|ref|XP_004148324.1| PREDICTED: nifU-like protein 3, chloroplastic-like [Cucumis sativus] gi|449510563|ref|XP_004163700.1| PREDICTED: nifU-like protein 3, chloroplastic-like [Cucumis sativus]

 Score =  326 bits (836), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 172/232 (74%), Positives = 192/232 (82%), Gaps = 7/232 (3%)

Query: 1   MGALSTQTQGLKASSTAIFNQKFSSSEKTSASFRLSLFKNPISDFSG-FSSKQSSFLGFS 59
           +   ST+ Q  K  ST I    + S    ++   LS FK+  S F G F S+   FL F+
Sbjct: 2   VATFSTRAQPFK--STPIAATLYRSPSHPASPSYLSFFKS--SFFRGQFCSRH--FLRFN 55

Query: 60  LNHVRRKHRGLVVSPCCVLPLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQG 119
            +  R +H G VVSP CVLPLTEENVE+VLDEVRPGLMADGGNVALHEIDGLVV+LKLQG
Sbjct: 56  SSCTRIRHLGNVVSPSCVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQG 115

Query: 120 ACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTETGLELNEENIEKVLAEIRPYLAG 179
           ACGSCPSSTMTLKMGIETRLRDKIPEILEVEQI+DTETGLELNEEN+EKVL+EIRPYLAG
Sbjct: 116 ACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVLSEIRPYLAG 175

Query: 180 TGGGILELIQIDDYVVRVRLSGPAAGVMTVRVALTQKLREKIPSIAAVQLID 231
           TGGGILE+I+I DYVV+VRLSGPAAGVMTVRVALTQKLREKIP+IAAVQLI+
Sbjct: 176 TGGGILEVIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 227

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487917|gb|ABK95780.1| unknown [Populus trichocarpa]

 Score =  326 bits (835), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 168/227 (74%), Positives = 188/227 (82%), Gaps = 16/227 (7%)

Query: 18  IFNQKFSSSEKTSASFRLSLFK-NPISDFSGFSSKQSSFL------------GFSLNHVR 64
           + N   S ++KT  S    LFK + +SD  G SSKQ++FL             F LN  R
Sbjct: 1   MLNPFLSLAQKTQQSL---LFKTDAVSDSCGLSSKQNAFLRGQFQFHSRHFLHFKLNRGR 57

Query: 65  RKHRGLVVSPCCVLPLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSC 124
            K  G+VVSP CVLPLTEENVE+VLDEVRPGLM DGGNVALHEIDGLVVVLKLQGACGSC
Sbjct: 58  MKCTGVVVSPSCVLPLTEENVEKVLDEVRPGLMRDGGNVALHEIDGLVVVLKLQGACGSC 117

Query: 125 PSSTMTLKMGIETRLRDKIPEILEVEQILDTETGLELNEENIEKVLAEIRPYLAGTGGGI 184
           PSS+MTLKMGIET+LRDKIPEI++VEQI+DTETGLELNEEN+EK LAEIRPYLAGTGGG+
Sbjct: 118 PSSSMTLKMGIETKLRDKIPEIMDVEQIMDTETGLELNEENVEKALAEIRPYLAGTGGGV 177

Query: 185 LELIQIDDYVVRVRLSGPAAGVMTVRVALTQKLREKIPSIAAVQLID 231
           LEL+QI+DYVV+VRLSGPAAGVMTVRVALTQKLRE IP+IAAVQLID
Sbjct: 178 LELVQINDYVVKVRLSGPAAGVMTVRVALTQKLRETIPAIAAVQLID 224

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357449361|ref|XP_003594957.1| NifU-like protein [Medicago truncatula] gi|355484005|gb|AES65208.1| NifU-like protein [Medicago truncatula]

 Score =  320 bits (820), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 170/241 (70%), Positives = 187/241 (77%), Gaps = 13/241 (5%)

Query: 2   GALSTQTQGLKASSTAIFNQKFSSSEKTSASFRLSLFKNPISDFSGFSSKQSSFL-GFSL 60
           GALST T     + T I    + S    S  F   LFKN I+    FSS +S FL G  +
Sbjct: 4   GALSTPTTQCLKTRTTIVTMLYPSHRLLSTHF--CLFKNLIAGNRRFSSNESCFLRGHQI 61

Query: 61  N----------HVRRKHRGLVVSPCCVLPLTEENVERVLDEVRPGLMADGGNVALHEIDG 110
           N             R   G VVSP CVLPLTEENVE+VLDEVRPGLMADGGNVALHEIDG
Sbjct: 62  NIKQVFGLISRRAPRNKAGFVVSPRCVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDG 121

Query: 111 LVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTETGLELNEENIEKVL 170
           LVV+LKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTETGLEL E+N+E VL
Sbjct: 122 LVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTETGLELTEDNVESVL 181

Query: 171 AEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVMTVRVALTQKLREKIPSIAAVQLI 230
           +EIRPYL GTGGG LEL++I+DY+V+VRLSGPAAGVMTVRVALTQKLR+KIPSIAAVQLI
Sbjct: 182 SEIRPYLIGTGGGTLELVEINDYIVKVRLSGPAAGVMTVRVALTQKLRDKIPSIAAVQLI 241

Query: 231 D 231
           +
Sbjct: 242 E 242

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556204|ref|XP_003546416.1| PREDICTED: nifU-like protein 3, chloroplastic-like [Glycine max]

 Score =  320 bits (819), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 168/239 (70%), Positives = 183/239 (76%), Gaps = 20/239 (8%)

Query: 4   LSTQTQGLKASSTAIFNQKFSSSEKTSASFRLSLFKNPISDFSGFSSKQS---------- 53
           L+  TQ LKA+ T               + RL   KNP+S+  GFSSK++          
Sbjct: 7   LTPTTQSLKATRTIAM---------LYPTHRLLSLKNPVSNTRGFSSKENIFIRGQQINI 57

Query: 54  -SFLGFSLNHVRRKHRGLVVSPCCVLPLTEENVERVLDEVRPGLMADGGNVALHEIDGLV 112
             F G    H  R   G VVSP C LPLTEENVE+VLDEVRPGLMADGGNVALHEIDGLV
Sbjct: 58  KQFFGLISGHSPRNKAGGVVSPRCGLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLV 117

Query: 113 VVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTETGLELNEENIEKVLAE 172
           VVLKLQGACGSCPSS MTLKMGIETRLRDKIPEILEVEQI+DTETGLEL EEN+E VL+E
Sbjct: 118 VVLKLQGACGSCPSSAMTLKMGIETRLRDKIPEILEVEQIMDTETGLELTEENVENVLSE 177

Query: 173 IRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVMTVRVALTQKLREKIPSIAAVQLID 231
           IRPYL GTGGGILEL+QI DYVV+VRLSGPAAGV TVRVALTQKLR+KIP+IAAVQLID
Sbjct: 178 IRPYLVGTGGGILELVQIKDYVVKVRLSGPAAGVTTVRVALTQKLRDKIPAIAAVQLID 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530300|ref|XP_003533720.1| PREDICTED: nifU-like protein 3, chloroplastic-like isoform 1 [Glycine max] gi|356530302|ref|XP_003533721.1| PREDICTED: nifU-like protein 3, chloroplastic-like isoform 2 [Glycine max]

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 168/240 (70%), Positives = 189/240 (78%), Gaps = 20/240 (8%)

Query: 3   ALST-QTQGLKASSTAIFNQKFSSSEKTSASFRLSLFKNPISDFSGFSSKQSSFL-GFSL 60
           ALST  TQ LKA+ T         +     + RL   KNP+S+  GFSSK++ F+ G  +
Sbjct: 5   ALSTPTTQSLKATRT---------NAMLYPTHRLLSLKNPVSNTRGFSSKENIFIRGHQI 55

Query: 61  NHVR---------RKHRGLVVSPCCVLPLTEENVERVLDEVRPGLMADGGNVALHEIDGL 111
           N  +          +++  VVSP C LPLTEENVE+VLDEVRPGLMADGGNVALHEIDGL
Sbjct: 56  NIKQFFGLISGRTPRNKAGVVSPRCGLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGL 115

Query: 112 VVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTETGLELNEENIEKVLA 171
           VVVLKLQGACGSCPSS MTLKMGIETRLRDKIPEILEVEQI+DTETGLEL EEN+E VL+
Sbjct: 116 VVVLKLQGACGSCPSSAMTLKMGIETRLRDKIPEILEVEQIMDTETGLELTEENVENVLS 175

Query: 172 EIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVMTVRVALTQKLREKIPSIAAVQLID 231
           EIRPYL GTGGGILEL+QI DY V+VRLSGPAAGV TVRVALTQKLR+KIP+IAAVQLID
Sbjct: 176 EIRPYLVGTGGGILELVQIKDYTVKVRLSGPAAGVTTVRVALTQKLRDKIPAIAAVQLID 235

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126127|ref|XP_002329667.1| predicted protein [Populus trichocarpa] gi|222870548|gb|EEF07679.1| predicted protein [Populus trichocarpa]

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 147/166 (88%), Positives = 160/166 (96%)

Query: 66  KHRGLVVSPCCVLPLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCP 125
           K  G+VVSP CVLPLTEENVE+VLDEVRPGLM DGGNVALHEIDGLVVVLKLQGACGSCP
Sbjct: 2   KCTGVVVSPSCVLPLTEENVEKVLDEVRPGLMRDGGNVALHEIDGLVVVLKLQGACGSCP 61

Query: 126 SSTMTLKMGIETRLRDKIPEILEVEQILDTETGLELNEENIEKVLAEIRPYLAGTGGGIL 185
           SS+MTLKMGIET+LRDKIPEI++VEQI+DTETGLELNEEN+EK LAEIRPYLAGTGGG+L
Sbjct: 62  SSSMTLKMGIETKLRDKIPEIMDVEQIMDTETGLELNEENVEKALAEIRPYLAGTGGGVL 121

Query: 186 ELIQIDDYVVRVRLSGPAAGVMTVRVALTQKLREKIPSIAAVQLID 231
           EL+QI+DYVV+VRLSGPAAGVMTVRVALTQKLRE IP+IAAVQLID
Sbjct: 122 ELVQINDYVVKVRLSGPAAGVMTVRVALTQKLRETIPAIAAVQLID 167

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803520|ref|XP_002869644.1| hypothetical protein ARALYDRAFT_492226 [Arabidopsis lyrata subsp. lyrata] gi|297315480|gb|EFH45903.1| hypothetical protein ARALYDRAFT_492226 [Arabidopsis lyrata subsp. lyrata]

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 166/245 (67%), Positives = 191/245 (77%), Gaps = 21/245 (8%)

Query: 1   MGALSTQTQGLKASSTAIFNQKFSSSEKTSASFRLSLF--KNPISDFSGFSSKQSSFL-- 56
           MG +S QT+          N   SS+EK + +FRLSL   KN ISD  G SSK S+FL  
Sbjct: 1   MGLVSGQTR------ITTMNLSLSSAEK-NPNFRLSLLNSKNAISDSLGVSSKCSTFLRG 53

Query: 57  -----GFSLNH----VRRKHRGLVVSPCCVLPLTEENVERVLDEVRPGLMADGGNVALHE 107
                 FSL H    +R + R +     CV+PLTEENVERVLDEVRP LMADGGNVALHE
Sbjct: 54  QFQRIHFSLVHHTRPLRTRSRSVFGHVSCVMPLTEENVERVLDEVRPSLMADGGNVALHE 113

Query: 108 IDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTET-GLELNEENI 166
           IDGLVVVLKLQGACGSCPSS+MTLKMGIE+RLRDKIPEI+ VEQ L++ET GLELN+ENI
Sbjct: 114 IDGLVVVLKLQGACGSCPSSSMTLKMGIESRLRDKIPEIMSVEQFLESETGGLELNDENI 173

Query: 167 EKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVMTVRVALTQKLREKIPSIAA 226
           EKVL+E+RPYL+GTGGG LEL++ID Y+V+VRLSGPAAGVMTVRVALTQKLRE IPSI A
Sbjct: 174 EKVLSELRPYLSGTGGGGLELVEIDGYIVKVRLSGPAAGVMTVRVALTQKLRENIPSIGA 233

Query: 227 VQLID 231
           VQL++
Sbjct: 234 VQLLE 238

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416645|ref|NP_567735.1| NifU-like protein 3 [Arabidopsis thaliana] gi|75147908|sp|Q84RQ7.1|NIFU3_ARATH RecName: Full=NifU-like protein 3, chloroplastic; Short=AtCNfu3; Short=AtCnfU-IVa; Flags: Precursor gi|28207820|emb|CAD55560.1| NFU3 protein [Arabidopsis thaliana] gi|88196759|gb|ABD43022.1| At4g25910 [Arabidopsis thaliana] gi|222423670|dbj|BAH19802.1| AT4G25910 [Arabidopsis thaliana] gi|332659732|gb|AEE85132.1| NifU-like protein 3 [Arabidopsis thaliana]

 Score =  296 bits (757), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 164/243 (67%), Positives = 190/243 (78%), Gaps = 19/243 (7%)

Query: 1   MGALSTQTQGLKASSTAIFNQKFSSSEKTSASFRLSLF--KNPISDFSGFSSKQSSFL-- 56
           MG++S QT+          N   S++EK + +FR SL   KN ISD  G SSK S+FL  
Sbjct: 1   MGSVSGQTR------ITTMNLSLSTAEK-NPNFRSSLLNSKNAISDTLGVSSKCSTFLRG 53

Query: 57  -----GFS-LNHVRR-KHRGLVVSPCCVLPLTEENVERVLDEVRPGLMADGGNVALHEID 109
                 FS L H R  + R +     CV+PLTEENVERVLDEVRP LMADGGNVALHEID
Sbjct: 54  QFQRIHFSWLQHTRPLRKRTVFGHVSCVMPLTEENVERVLDEVRPSLMADGGNVALHEID 113

Query: 110 GLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTET-GLELNEENIEK 168
           GLVVVLKLQGACGSCPSS+MTLKMGIE+RLRDKIPEI+ VEQ L++ET GLELN+ENIEK
Sbjct: 114 GLVVVLKLQGACGSCPSSSMTLKMGIESRLRDKIPEIMSVEQFLESETGGLELNDENIEK 173

Query: 169 VLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVMTVRVALTQKLREKIPSIAAVQ 228
           VL+E+RPYL+GTGGG LEL++ID YVV+VRL+GPAAGVMTVRVALTQKLRE IPSI AVQ
Sbjct: 174 VLSELRPYLSGTGGGGLELVEIDGYVVKVRLTGPAAGVMTVRVALTQKLRETIPSIGAVQ 233

Query: 229 LID 231
           L++
Sbjct: 234 LLE 236

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
TAIR|locus:2120745	236	NFU3 "NFU domain protein 3" [A	0.675	0.661	0.847	1.7e-66
TAIR|locus:2158849	235	NFU2 "NIFU-like protein 2" [Ar	0.679	0.668	0.757	5.7e-59
UNIPROTKB|P74558	76	ssl2667 "NifU protein" [Synech	0.329	1.0	0.710	6.8e-24
TAIR|locus:2141400	231	NFU1 "NFU domain protein 1" [A	0.597	0.597	0.375	2.7e-20
UNIPROTKB|Q81XP7	78	BAS4821 "NifU domain protein"	0.320	0.948	0.540	1.1e-16
TIGR_CMR|BA_5186	78	BA_5186 "nifU domain protein"	0.320	0.948	0.540	1.1e-16
UNIPROTKB|Q74FX2	74	GSU0480 "Thioredoxin/NifU-like	0.298	0.932	0.597	2.9e-16
TIGR_CMR|GSU_0480	74	GSU_0480 "NifU-like domain pro	0.298	0.932	0.597	2.9e-16
UNIPROTKB|Q3Z623	72	DET1632 "NifU-like protein" [D	0.285	0.916	0.632	1.6e-15
TIGR_CMR|DET_1632	72	DET_1632 "nifU protein, homolo	0.285	0.916	0.632	1.6e-15

TAIR|locus:2120745 NFU3 "NFU domain protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 133/157 (84%), Positives = 149/157 (94%)

Query:    76 CVLPLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGI 135
             CV+PLTEENVERVLDEVRP LMADGGNVALHEIDGLVVVLKLQGACGSCPSS+MTLKMGI
Sbjct:    80 CVMPLTEENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGI 139

Query:   136 ETRLRDKIPEILEVEQILDTETG-LELNEENIEKVLAEIRPYLAGTGGGILELIQIDDYV 194
             E+RLRDKIPEI+ VEQ L++ETG LELN+ENIEKVL+E+RPYL+GTGGG LEL++ID YV
Sbjct:   140 ESRLRDKIPEIMSVEQFLESETGGLELNDENIEKVLSELRPYLSGTGGGGLELVEIDGYV 199

Query:   195 VRVRLSGPAAGVMTVRVALTQKLREKIPSIAAVQLID 231
             V+VRL+GPAAGVMTVRVALTQKLRE IPSI AVQL++
Sbjct:   200 VKVRLTGPAAGVMTVRVALTQKLRETIPSIGAVQLLE 236

GO:0005506 "iron ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA;IGI;ISS

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005198 "structural molecule activity" evidence=TAS

GO:0009658 "chloroplast organization" evidence=ISS

GO:0009570 "chloroplast stroma" evidence=IDA

TAIR|locus:2158849 NFU2 "NIFU-like protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 119/157 (75%), Positives = 138/157 (87%)

Query:    74 PCCVLPLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKM 133
             P   +PLTEENVE VLDE+RP LM+DGGNVALHEIDG +V +KLQGACGSCPSSTMT+KM
Sbjct:    79 PILEVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKM 138

Query:   134 GIETRLRDKIPEILEVEQILDTETGLELNEENIEKVLAEIRPYLAGTGGGILELIQIDDY 193
             GIE RL +KIPEI+ VE + D ETGLELNEENIEKVL EIRPYL GT  G L+L++I+D 
Sbjct:   139 GIERRLMEKIPEIVAVEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDP 198

Query:   194 VVRVRLSGPAAGVMTVRVALTQKLREKIPSIAAVQLI 230
             +V++R++GPAAGVMTVRVA+TQKLREKIPSIAAVQLI
Sbjct:   199 IVKIRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLI 235

GO:0005506 "iron ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA;IGI;IMP

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005198 "structural molecule activity" evidence=TAS

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009570 "chloroplast stroma" evidence=IDA

UNIPROTKB|P74558 ssl2667 "NifU protein" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 54/76 (71%), Positives = 64/76 (84%)

Query:    78 LPLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIET 137
             + LT  NVE VLDE+RP LMADGGNV + E+DG +V ++LQGACGSCPSSTMTLKMGIE 
Sbjct:     1 MELTLNNVETVLDELRPYLMADGGNVEVVELDGPIVKVRLQGACGSCPSSTMTLKMGIER 60

Query:   138 RLRDKIPEILEVEQIL 153
             +LR+ IPEI EVEQ+L
Sbjct:    61 KLREMIPEIAEVEQVL 76

GO:0016226 "iron-sulfur cluster assembly" evidence=IDA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IDA

TAIR|locus:2141400 NFU1 "NFU domain protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 53/141 (37%), Positives = 88/141 (62%)

Query:    80 LTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRL 139
             LT +NV+ VL++VRP L++DGGNV +  ++  VV LKLQGAC SCPSS+ T+ MGIE  L
Sbjct:    85 LTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIERVL 144

Query:   140 RDKIPEIL-EVEQILDTETGLELNEENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRVR 198
             ++K  + L ++ Q+ D E   ++  E +   L  +RP +   GG + E++ ++     V+
Sbjct:   145 KEKFGDALKDIRQVFDEEVK-QITVEAVNAHLDILRPAIKNYGGSV-EVLSVEGEDCVVK 202

Query:   199 LSGPAAGVMTVRVALTQKLRE 219
               GP +  M ++ A+ +K ++
Sbjct:   203 YVGPESIGMGIQAAIKEKFKD 223

GO:0005506 "iron ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA;IGI;ISS

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005198 "structural molecule activity" evidence=TAS

GO:0009658 "chloroplast organization" evidence=ISS

UNIPROTKB|Q81XP7 BAS4821 "NifU domain protein" [Bacillus anthracis (taxid:1392)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 40/74 (54%), Positives = 56/74 (75%)

Query:    79 PLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETR 138
             P  +E V  VLD++RP L+ DGG+V L +I+  +V L+L GACGSCPSST+TLK GIE  
Sbjct:     4 PHMQEQVLEVLDKLRPFLLRDGGDVELVDIEEGIVKLRLMGACGSCPSSTITLKAGIERA 63

Query:   139 LRDKIPEILEVEQI 152
             L +++P ++EVEQ+
Sbjct:    64 LLEEVPGVIEVEQV 77

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_5186 BA_5186 "nifU domain protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 40/74 (54%), Positives = 56/74 (75%)

Query:    79 PLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETR 138
             P  +E V  VLD++RP L+ DGG+V L +I+  +V L+L GACGSCPSST+TLK GIE  
Sbjct:     4 PHMQEQVLEVLDKLRPFLLRDGGDVELVDIEEGIVKLRLMGACGSCPSSTITLKAGIERA 63

Query:   139 LRDKIPEILEVEQI 152
             L +++P ++EVEQ+
Sbjct:    64 LLEEVPGVIEVEQV 77

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q74FX2 GSU0480 "Thioredoxin/NifU-like domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 43/72 (59%), Positives = 54/72 (75%)

Query:    83 ENVERVLDEVRPGLMADGGNVALHEI--DGLVVVLKLQGACGSCPSSTMTLKMGIETRLR 140
             E+V++VLD VRP L ADGG+V L E+  DG+V V KL GACG CP STMTLKMGIE  L+
Sbjct:     3 EDVKKVLDLVRPALQADGGDVELVEVTEDGVVKV-KLVGACGHCPMSTMTLKMGIERTLK 61

Query:   141 DKIPEILEVEQI 152
             +K+P + EV  +
Sbjct:    62 EKVPGVKEVVSV 73

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_0480 GSU_0480 "NifU-like domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 43/72 (59%), Positives = 54/72 (75%)

Query:    83 ENVERVLDEVRPGLMADGGNVALHEI--DGLVVVLKLQGACGSCPSSTMTLKMGIETRLR 140
             E+V++VLD VRP L ADGG+V L E+  DG+V V KL GACG CP STMTLKMGIE  L+
Sbjct:     3 EDVKKVLDLVRPALQADGGDVELVEVTEDGVVKV-KLVGACGHCPMSTMTLKMGIERTLK 61

Query:   141 DKIPEILEVEQI 152
             +K+P + EV  +
Sbjct:    62 EKVPGVKEVVSV 73

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3Z623 DET1632 "NifU-like protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 43/68 (63%), Positives = 50/68 (73%)

Query:    83 ENVERVLDEVRPGLMADGGNVALHEI-DGLVVVLKLQGACGSCPSSTMTLKMGIETRLRD 141
             E VE VLD++RP L ADGGNV L E+ DG+V V KL GAC  CP STMTLK GIE  L+ 
Sbjct:     3 EKVEAVLDKIRPALEADGGNVELVEVVDGVVKV-KLVGACAGCPMSTMTLKNGIEKILKR 61

Query:   142 KIPEILEV 149
             +IPE+ EV
Sbjct:    62 EIPEVKEV 69

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_1632 DET_1632 "nifU protein, homolog" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 43/68 (63%), Positives = 50/68 (73%)

Query:    83 ENVERVLDEVRPGLMADGGNVALHEI-DGLVVVLKLQGACGSCPSSTMTLKMGIETRLRD 141
             E VE VLD++RP L ADGGNV L E+ DG+V V KL GAC  CP STMTLK GIE  L+ 
Sbjct:     3 EKVEAVLDKIRPALEADGGNVELVEVVDGVVKV-KLVGACAGCPMSTMTLKNGIEKILKR 61

Query:   142 KIPEILEV 149
             +IPE+ EV
Sbjct:    62 EIPEVKEV 69

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84RQ7	NIFU3_ARATH	No assigned EC number	0.6748	0.9696	0.9491	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_1210153 SubName- Full=Putative uncharacterized protein; (167 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	231
pfam01106	68	pfam01106, NifU, NifU-like domain	1e-27
COG0694	93	COG0694, COG0694, Thioredoxin-like proteins and do	6e-27
TIGR02000	290	TIGR02000, NifU_proper, Fe-S cluster assembly prot	1e-16
TIGR03341	190	TIGR03341, YhgI_GntY, IscR-regulated protein YhgI	7e-13
pfam01106	68	pfam01106, NifU, NifU-like domain	5e-09
PRK11190	192	PRK11190, PRK11190, Fe/S biogenesis protein NfuA;	1e-06
COG0694	93	COG0694, COG0694, Thioredoxin-like proteins and do	9e-06
TIGR02000	290	TIGR02000, NifU_proper, Fe-S cluster assembly prot	4e-05
TIGR03341	190	TIGR03341, YhgI_GntY, IscR-regulated protein YhgI	0.002

>gnl|CDD|144628 pfam01106, NifU, NifU-like domain

 Score = 99.6 bits (249), Expect = 1e-27
 Identities = 36/68 (52%), Positives = 51/68 (75%)

Query: 85  VERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIP 144
           +E V+DE+RP L  DGG++ L ++DG +V ++LQGACG C SSTMTLK GIE +LR+++ 
Sbjct: 1   IEEVIDEIRPMLQRDGGDIELVDVDGDIVKVRLQGACGGCMSSTMTLKGGIERKLRERLG 60

Query: 145 EILEVEQI 152
           E L V  +
Sbjct: 61  ESLRVIPV 68

This is an alignment of the carboxy-terminal domain. This is the only common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown. Length = 68

>gnl|CDD|223766 COG0694, COG0694, Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]

 Score = 98.9 bits (247), Expect = 6e-27
 Identities = 44/79 (55%), Positives = 55/79 (69%), Gaps = 3/79 (3%)

Query: 83  ENVERVLDE-VRPGLMADGGNVALHEIDGL--VVVLKLQGACGSCPSSTMTLKMGIETRL 139
           E VE VLDE +RP L  DGG+V L  ID    VV L+L GAC  CPSST+TLK GIE +L
Sbjct: 12  ERVEEVLDEKIRPQLAMDGGDVELVGIDEEDGVVYLRLGGACSGCPSSTVTLKNGIERQL 71

Query: 140 RDKIPEILEVEQILDTETG 158
           +++IPE+ EVEQ+ +   G
Sbjct: 72  KEEIPEVKEVEQVTEHARG 90

Length = 93

>gnl|CDD|233679 TIGR02000, NifU_proper, Fe-S cluster assembly protein NifU

 Score = 76.4 bits (188), Expect = 1e-16
 Identities = 34/66 (51%), Positives = 49/66 (74%), Gaps = 1/66 (1%)

Query: 85  VERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIP 144
           +++VL+EVRP L ADGG+V L+++DG +V + L GAC  C  STMTL  GI+ RLR+++ 
Sbjct: 224 IQKVLEEVRPVLQADGGDVELYDVDGKIVYVVLTGACSGCSMSTMTL-KGIQQRLRERLG 282

Query: 145 EILEVE 150
           E + VE
Sbjct: 283 EFVVVE 288

Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Central intermediary metabolism, Nitrogen fixation]. Length = 290

>gnl|CDD|132384 TIGR03341, YhgI_GntY, IscR-regulated protein YhgI

 Score = 64.7 bits (158), Expect = 7e-13
 Identities = 31/79 (39%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 82  EENVERVL-DEVRPGLMADGGNVALHEI-DGLVVVLKLQGACGSCPSSTMTLKMGIETRL 139
           EE +  VL  E+ P L + GG V L EI D  V VL+  G C  C    +TLK G+E  L
Sbjct: 107 EERINYVLQSEINPQLASHGGKVTLVEITDDGVAVLQFGGGCNGCSMVDVTLKDGVEKTL 166

Query: 140 RDKIPEILEVEQILDTETG 158
            ++ PE+  V    D   G
Sbjct: 167 LERFPELKGVRDATDHTRG 185

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 190

>gnl|CDD|144628 pfam01106, NifU, NifU-like domain

 Score = 51.1 bits (123), Expect = 5e-09
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 166 IEKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVM----TVRVALTQKLREKI 221
           IE+V+ EIRP L   GG I EL+ +D  +V+VRL G   G M    T++  + +KLRE++
Sbjct: 1   IEEVIDEIRPMLQRDGGDI-ELVDVDGDIVKVRLQGACGGCMSSTMTLKGGIERKLRERL 59

Query: 222 PSIAAV 227
                V
Sbjct: 60  GESLRV 65

This is an alignment of the carboxy-terminal domain. This is the only common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown. Length = 68

>gnl|CDD|183027 PRK11190, PRK11190, Fe/S biogenesis protein NfuA; Provisional

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 5/80 (6%)

Query: 83  ENVERVLD-EVRPGLMADGGNVALHEI--DGLVVVLKLQGACGSCPSSTMTLKMGIETRL 139
           E VE VL  ++ P L   GG V+L EI  DG   +L+  G C  C    +TLK GIE +L
Sbjct: 109 ERVEYVLQSQINPQLAGHGGRVSLMEITEDG-YAILQFGGGCNGCSMVDVTLKEGIEKQL 167

Query: 140 RDKIP-EILEVEQILDTETG 158
            ++ P E+  V  + + + G
Sbjct: 168 LNEFPGELKGVRDLTEHQRG 187

Length = 192

>gnl|CDD|223766 COG0694, COG0694, Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]

 Score = 42.7 bits (101), Expect = 9e-06
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 8/71 (11%)

Query: 164 ENIEKVL-AEIRPYLAGTGGGILELIQID--DYVVRVRLSGPAAG----VMTVRVALTQK 216
           E +E+VL  +IRP LA  GG + EL+ ID  D VV +RL G  +G     +T++  + ++
Sbjct: 12  ERVEEVLDEKIRPQLAMDGGDV-ELVGIDEEDGVVYLRLGGACSGCPSSTVTLKNGIERQ 70

Query: 217 LREKIPSIAAV 227
           L+E+IP +  V
Sbjct: 71  LKEEIPEVKEV 81

Length = 93

>gnl|CDD|233679 TIGR02000, NifU_proper, Fe-S cluster assembly protein NifU

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 4/59 (6%)

Query: 166 IEKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVMTVRVALT---QKLREKI 221
           I+KVL E+RP L   GG + EL  +D  +V V L+G  +G     + L    Q+LRE++
Sbjct: 224 IQKVLEEVRPVLQADGGDV-ELYDVDGKIVYVVLTGACSGCSMSTMTLKGIQQRLRERL 281

Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Central intermediary metabolism, Nitrogen fixation]. Length = 290

>gnl|CDD|132384 TIGR03341, YhgI_GntY, IscR-regulated protein YhgI

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 7/71 (9%)

Query: 163 EENIEKVL-AEIRPYLAGTGGGILELIQI-DDYVVRVRLSGPAAGVMTVRVALTQ----K 216
           EE I  VL +EI P LA  GG +  L++I DD V  ++  G   G   V V L       
Sbjct: 107 EERINYVLQSEINPQLASHGGKV-TLVEITDDGVAVLQFGGGCNGCSMVDVTLKDGVEKT 165

Query: 217 LREKIPSIAAV 227
           L E+ P +  V
Sbjct: 166 LLERFPELKGV 176

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 190

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	231
PF01106	68	NifU: NifU-like domain; InterPro: IPR001075 Iron-s	99.88
COG0694	93	Thioredoxin-like proteins and domains [Posttransla	99.88
KOG2358	213	consensus NifU-like domain-containing proteins [Po	99.85
PF01106	68	NifU: NifU-like domain; InterPro: IPR001075 Iron-s	99.84
TIGR03341	190	YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR0	99.83
PRK11190	192	Fe/S biogenesis protein NfuA; Provisional	99.82
COG0694	93	Thioredoxin-like proteins and domains [Posttransla	99.81
TIGR02000	290	NifU_proper Fe-S cluster assembly protein NifU. Th	99.8
TIGR02000	290	NifU_proper Fe-S cluster assembly protein NifU. Th	99.74
TIGR03341	190	YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR0	99.74
PRK11190	192	Fe/S biogenesis protein NfuA; Provisional	99.73
KOG2358	213	consensus NifU-like domain-containing proteins [Po	99.37
PF01883	72	DUF59: Domain of unknown function DUF59; InterPro:	95.73
PF01883	72	DUF59: Domain of unknown function DUF59; InterPro:	95.36
TIGR03406	174	FeS_long_SufT probable FeS assembly SUF system pro	83.0

>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron

Probab=99.88  E-value=8e-23  Score=149.77  Aligned_cols=68  Identities=53%  Similarity=0.906  Sum_probs=64.4

Q ss_pred             HHHHHHHhcCccccCCCeEEEEEEeCcEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeeeee
Q 038446           85 VERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQI  152 (231)
Q Consensus        85 V~~vL~~IRP~L~~dGGdVeLv~Ve~~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~~v  152 (231)
                      |+++|++|||+|++||||++|++|++++|||||+|+|++||++.+|++++||++|++++|++.+|.++
T Consensus         1 V~~~l~~IrP~L~~dGGdv~lv~v~~~~V~V~l~GaC~gC~~s~~Tl~~~Ie~~L~~~~~~v~~V~~v   68 (68)
T PF01106_consen    1 VEEVLEEIRPYLQSDGGDVELVDVDDGVVYVRLTGACSGCPSSDMTLKQGIEQALREAVPEVKRVVPV   68 (68)
T ss_dssp             HHHHHHHCHHHHHHTTEEEEEEEEETTEEEEEEESSCCSSCCHHHHHHHHHHHHHHHHSTT-SEEEEC
T ss_pred             CHHHHHHhChHHHhcCCcEEEEEecCCEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCCceEEEC
Confidence            68899999999999999999999999999999999999999999999999999999999999998763

These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.

>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=1.8e-22  Score=156.59  Aligned_cols=76  Identities=55%  Similarity=0.874  Sum_probs=71.5

Q ss_pred             HHHHHHHHH-HhcCccccCCCeEEEEEEe--CcEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeeeeeccccc
Q 038446           82 EENVERVLD-EVRPGLMADGGNVALHEID--GLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTET  157 (231)
Q Consensus        82 ~e~V~~vL~-~IRP~L~~dGGdVeLv~Ve--~~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~~v~~~~~  157 (231)
                      .++|+.+|+ +|||+|++|||||+|++|+  +|+|+++|+|+|+|||++.+|||++||++|++.+|++.+|+++.++..
T Consensus        11 ~e~v~~~l~~~irP~l~~dGGdve~~~i~~~~g~V~l~l~GaC~gC~sS~~TLk~gIE~~L~~~i~ev~~V~~v~~~~~   89 (93)
T COG0694          11 LERVEEVLDEKIRPQLAMDGGDVELVGIDEEDGVVYLRLGGACSGCPSSTVTLKNGIERQLKEEIPEVKEVEQVTEHAR   89 (93)
T ss_pred             HHHHHHHHHhccCcceeccCCeEEEEEEecCCCeEEEEeCCcCCCCcccHHHHHHHHHHHHHHhCCccceEEEccCccc
Confidence            578999998 7999999999999999999  789999999999999999999999999999999999999999877653

>KOG2358 consensus NifU-like domain-containing proteins [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=2.9e-22  Score=173.91  Aligned_cols=161  Identities=38%  Similarity=0.502  Sum_probs=136.2

Q ss_pred             cccccCCcC---CCccccccccccc---ccccccccceeecccccCCC--CCCCcHHHHHHHHHHhcCccccCCCeEEEE
Q 038446           35 LSLFKNPIS---DFSGFSSKQSSFL---GFSLNHVRRKHRGLVVSPCC--VLPLTEENVERVLDEVRPGLMADGGNVALH  106 (231)
Q Consensus        35 ~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~--~~~lt~e~V~~vL~~IRP~L~~dGGdVeLv  106 (231)
                      +.+.++++.   ....|+..++.|+   ...+.+..+.+..++..|+.  -.+++++.++.+|+..+|++.+|||++.+-
T Consensus        24 ~f~p~~~i~~~~~~~~~~~~~s~~~s~La~s~~~~~~gvv~~~~g~dfvtv~k~~ee~~w~~L~p~i~~~~sd~g~~g~p  103 (213)
T KOG2358|consen   24 LFLPGKQILSERGLGDFATPCSAFFSPLAKSILFRDGGVVKVFFGPDFVTVTKLTEENVWSVLDPEIPSLMSDGGNVGLP  103 (213)
T ss_pred             cccCCCcccccccccccccccchhhcHHHHHHHhhcCCcEEEEecCCeEEEeccchhhhHhhhchhhHHHHhccccccch
Confidence            334667777   4666777777663   33444555677778888884  458989999999999999999999999999


Q ss_pred             EEeCcEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeeeeecccccccchhhHHHHHHHHhccceecccCCCcEE
Q 038446          107 EIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTETGLELNEENIEKVLAEIRPYLAGTGGGILE  186 (231)
Q Consensus       107 ~Ve~~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~~v~~~~~~~~lt~e~V~~vL~~IRP~L~~hdGGdvE  186 (231)
                      .|++..+.++++|+|..||.+.+++|+.||.                                  +|||.++. ||||++
T Consensus       104 li~g~~~~~~~~~~~e~d~e~t~~ikeliet----------------------------------RiRp~i~e-dggdi~  148 (213)
T KOG2358|consen  104 LIDGNIVVLKLQGACESDPESTMTIKELIET----------------------------------RIRPKIQE-DGGDED  148 (213)
T ss_pred             hhccchhhhhhcccccCChhHHHHHHHHHHH----------------------------------hhhhhhhc-cCCcee
Confidence            9999999999999999999998888776663                                  36777888 799999


Q ss_pred             EEEEeC--CEEEEEecCCCCCch----hHHHHHHHHHHhhCCCcceEEeC
Q 038446          187 LIQIDD--YVVRVRLSGPAAGVM----TVRVALTQKLREKIPSIAAVQLI  230 (231)
Q Consensus       187 lV~v~~--~vv~VrL~GaC~gC~----Tlk~~Ie~~Lr~~iPei~~V~~v  230 (231)
                      ++++|+  ++++.||+|+|.+|+    |||++||..|+.++|++|.|+.+
T Consensus       149 y~g~e~g~g~v~lklqgact~cpss~vtlk~Gie~mL~~y~~eVK~v~qv  198 (213)
T KOG2358|consen  149 YVGFETGLGLVSLKLQGACTECPSSLVTLKNGIENMLEIYVPEVKGVIQV  198 (213)
T ss_pred             eccccCccchHHHHHhhhhccCCcccchhhhhHHHHHHhhcceeeEEEec
Confidence            999998  599999999999995    99999999999999999999875

>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron

Probab=99.84  E-value=4.9e-21  Score=140.33  Aligned_cols=64  Identities=45%  Similarity=0.773  Sum_probs=59.8

Q ss_pred             HHHHHHhccceecccCCCcEEEEEEeCCEEEEEecCCCCCch----hHHHHHHHHHHhhCCCcceEEeC
Q 038446          166 IEKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVM----TVRVALTQKLREKIPSIAAVQLI  230 (231)
Q Consensus       166 V~~vL~~IRP~L~~hdGGdvElV~v~~~vv~VrL~GaC~gC~----Tlk~~Ie~~Lr~~iPei~~V~~v  230 (231)
                      |+++|++|||+|++| |||++|+++++++|+|||+|+|++|+    |++++||++|++++|++++|+++
T Consensus         1 V~~~l~~IrP~L~~d-GGdv~lv~v~~~~V~V~l~GaC~gC~~s~~Tl~~~Ie~~L~~~~~~v~~V~~v   68 (68)
T PF01106_consen    1 VEEVLEEIRPYLQSD-GGDVELVDVDDGVVYVRLTGACSGCPSSDMTLKQGIEQALREAVPEVKRVVPV   68 (68)
T ss_dssp             HHHHHHHCHHHHHHT-TEEEEEEEEETTEEEEEEESSCCSSCCHHHHHHHHHHHHHHHHSTT-SEEEEC
T ss_pred             CHHHHHHhChHHHhc-CCcEEEEEecCCEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCCceEEEC
Confidence            678999999999995 99999999999999999999999994    99999999999999999999875

These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.

>TIGR03341 YhgI_GntY IscR-regulated protein YhgI

Probab=99.83  E-value=9.8e-21  Score=163.20  Aligned_cols=78  Identities=38%  Similarity=0.662  Sum_probs=72.8

Q ss_pred             cHHHHHHHHH-HhcCccccCCCeEEEEEEe-CcEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeeeeecccccc
Q 038446           81 TEENVERVLD-EVRPGLMADGGNVALHEID-GLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTETG  158 (231)
Q Consensus        81 t~e~V~~vL~-~IRP~L~~dGGdVeLv~Ve-~~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~~v~~~~~~  158 (231)
                      ..++|+.+|+ +|||+|++|||||+|++|+ +++|+|||+|+|++||++.+||+++||++|++.+|++.+|+.+++|..+
T Consensus       106 ~~~~i~~~l~~~irP~l~~dGGdielv~v~~~~~v~v~l~GaC~gC~~s~~Tl~~~ie~~l~~~~p~v~~V~~~~~~~~~  185 (190)
T TIGR03341       106 LEERINYVLQSEINPQLASHGGKVTLVEITDDGVAVLQFGGGCNGCSMVDVTLKDGVEKTLLERFPELKGVRDATDHTRG  185 (190)
T ss_pred             HHHHHHHHHHhccCHHHHhcCCceEEEEEcCCCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCcceEEEecCcccc
Confidence            3678999998 7999999999999999998 4799999999999999999999999999999999999999999888654

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.

>PRK11190 Fe/S biogenesis protein NfuA; Provisional

Probab=99.82  E-value=1.7e-20  Score=162.12  Aligned_cols=77  Identities=36%  Similarity=0.658  Sum_probs=72.5

Q ss_pred             HHHHHHHHH-HhcCccccCCCeEEEEEEe-CcEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcc-cceeeeeecccccc
Q 038446           82 EENVERVLD-EVRPGLMADGGNVALHEID-GLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIP-EILEVEQILDTETG  158 (231)
Q Consensus        82 ~e~V~~vL~-~IRP~L~~dGGdVeLv~Ve-~~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iP-ei~~V~~v~~~~~~  158 (231)
                      .++|+.+|+ +|||+|++|||||+|++|+ +++|+|||+|+|++||++.+||+++||.+|++.+| ++.+|+.+++|+.+
T Consensus       108 ~~~i~~~l~~~irP~l~~dGGdielv~v~~~~~v~v~l~GaC~gC~~s~~Tl~~~Ie~~l~~~~p~~i~~v~~v~~~~~~  187 (192)
T PRK11190        108 MERVEYVLQSQINPQLAGHGGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPGELKGVRDLTEHQRG  187 (192)
T ss_pred             HHHHHHHHHhccChhHHhcCCcEEEEEEcCCCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCHhhceEEEecccccC
Confidence            678999997 7999999999999999998 57999999999999999999999999999999999 99999999888654

>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=1.1e-19  Score=141.00  Aligned_cols=67  Identities=42%  Similarity=0.684  Sum_probs=63.3

Q ss_pred             hHHHHHHHH-hccceecccCCCcEEEEEEe--CCEEEEEecCCCCCch----hHHHHHHHHHHhhCCCcceEEeC
Q 038446          163 EENIEKVLA-EIRPYLAGTGGGILELIQID--DYVVRVRLSGPAAGVM----TVRVALTQKLREKIPSIAAVQLI  230 (231)
Q Consensus       163 ~e~V~~vL~-~IRP~L~~hdGGdvElV~v~--~~vv~VrL~GaC~gC~----Tlk~~Ie~~Lr~~iPei~~V~~v  230 (231)
                      .++|+++|+ +|||+|++ ||||++|++|+  +|+|++||.|||+||+    |||++||++|++.+|++++|+.+
T Consensus        11 ~e~v~~~l~~~irP~l~~-dGGdve~~~i~~~~g~V~l~l~GaC~gC~sS~~TLk~gIE~~L~~~i~ev~~V~~v   84 (93)
T COG0694          11 LERVEEVLDEKIRPQLAM-DGGDVELVGIDEEDGVVYLRLGGACSGCPSSTVTLKNGIERQLKEEIPEVKEVEQV   84 (93)
T ss_pred             HHHHHHHHHhccCcceec-cCCeEEEEEEecCCCeEEEEeCCcCCCCcccHHHHHHHHHHHHHHhCCccceEEEc
Confidence            589999998 99999999 59999999998  7899999999999994    99999999999999999999876

>TIGR02000 NifU_proper Fe-S cluster assembly protein NifU

Probab=99.80  E-value=4e-20  Score=168.42  Aligned_cols=120  Identities=28%  Similarity=0.454  Sum_probs=89.0

Q ss_pred             EEEEeCcEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccce---eeeeecccc----cccchh----hHHHHHHHHhc
Q 038446          105 LHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEIL---EVEQILDTE----TGLELN----EENIEKVLAEI  173 (231)
Q Consensus       105 Lv~Ve~~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~---~V~~v~~~~----~~~~lt----~e~V~~vL~~I  173 (231)
                      ..++++...+++.++.|++|-.   .++..++..+.+. +...   ...+.+++.    .+.+|+    .++|+++|++|
T Consensus       156 ~~t~~el~~~t~agt~CG~C~~---~~~~il~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~i  231 (290)
T TIGR02000       156 LTTLEEVTNYTKAGGGCGSCHE---KIEDVLKEVLANK-GATNPANAGGSKPTNKPNSGQKRPLTNVQRIQLIQKVLEEV  231 (290)
T ss_pred             CCcHHHHHhhccCCCCCcchHH---HHHHHHHHHHHhc-cccccccccccCcccccccCcchhcChHHHHHHHHHHHHHh
Confidence            3456666778899999999954   3444444444432 1110   112221111    112344    58899999999


Q ss_pred             cceecccCCCcEEEEEEeCCEEEEEecCCCCCch----hHHHHHHHHHHhhCCCcceEEeC
Q 038446          174 RPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVM----TVRVALTQKLREKIPSIAAVQLI  230 (231)
Q Consensus       174 RP~L~~hdGGdvElV~v~~~vv~VrL~GaC~gC~----Tlk~~Ie~~Lr~~iPei~~V~~v  230 (231)
                      ||||++| |||+||++|++++|+|||+|+|+||+    ||++ ||++|++++|++.+|+.|
T Consensus       232 rP~l~~d-GGdv~lv~v~~~~v~v~l~GaC~gC~~s~~Tl~~-Ie~~l~~~~p~~~~V~~v  290 (290)
T TIGR02000       232 RPVLQAD-GGDVELYDVDGKIVYVVLTGACSGCSMSTMTLKG-IQQRLRERLGEFVVVEAV  290 (290)
T ss_pred             CchHhhc-CCcEEEEEEeCCEEEEEEeeCCCCCcchHHHHHH-HHHHHHHhCCCceEEEeC
Confidence            9999995 99999999999999999999999994    9998 999999999999999875

Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens.

>TIGR02000 NifU_proper Fe-S cluster assembly protein NifU

Probab=99.74  E-value=3e-18  Score=156.15  Aligned_cols=70  Identities=49%  Similarity=0.818  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHhcCccccCCCeEEEEEEeCcEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeeeee
Q 038446           82 EENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQI  152 (231)
Q Consensus        82 ~e~V~~vL~~IRP~L~~dGGdVeLv~Ve~~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~~v  152 (231)
                      .++|+.+|++|||+|++|||||+|++|++++|||||+|+|++||++.+||+. ||++|++.+|++..|.++
T Consensus       221 ~~~v~~~l~~irP~l~~dGGdv~lv~v~~~~v~v~l~GaC~gC~~s~~Tl~~-Ie~~l~~~~p~~~~V~~v  290 (290)
T TIGR02000       221 IQLIQKVLEEVRPVLQADGGDVELYDVDGKIVYVVLTGACSGCSMSTMTLKG-IQQRLRERLGEFVVVEAV  290 (290)
T ss_pred             HHHHHHHHHHhCchHhhcCCcEEEEEEeCCEEEEEEeeCCCCCcchHHHHHH-HHHHHHHhCCCceEEEeC
Confidence            3689999989999999999999999999999999999999999999999998 999999999999988753

Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens.

>TIGR03341 YhgI_GntY IscR-regulated protein YhgI

Probab=99.74  E-value=3.4e-18  Score=147.44  Aligned_cols=68  Identities=34%  Similarity=0.523  Sum_probs=63.3

Q ss_pred             hhHHHHHHHH-hccceecccCCCcEEEEEEe-CCEEEEEecCCCCCch----hHHHHHHHHHHhhCCCcceEEeC
Q 038446          162 NEENIEKVLA-EIRPYLAGTGGGILELIQID-DYVVRVRLSGPAAGVM----TVRVALTQKLREKIPSIAAVQLI  230 (231)
Q Consensus       162 t~e~V~~vL~-~IRP~L~~hdGGdvElV~v~-~~vv~VrL~GaC~gC~----Tlk~~Ie~~Lr~~iPei~~V~~v  230 (231)
                      ..++|+++|+ +|||+|++| |||+|||+|+ +++|+|||+|+|++|+    |||++||++|++++|++++|+.+
T Consensus       106 ~~~~i~~~l~~~irP~l~~d-GGdielv~v~~~~~v~v~l~GaC~gC~~s~~Tl~~~ie~~l~~~~p~v~~V~~~  179 (190)
T TIGR03341       106 LEERINYVLQSEINPQLASH-GGKVTLVEITDDGVAVLQFGGGCNGCSMVDVTLKDGVEKTLLERFPELKGVRDA  179 (190)
T ss_pred             HHHHHHHHHHhccCHHHHhc-CCceEEEEEcCCCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCcceEEEe
Confidence            3689999998 899999995 9999999997 5799999999999995    99999999999999999999875

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.

>PRK11190 Fe/S biogenesis protein NfuA; Provisional

Probab=99.73  E-value=4.9e-18  Score=146.78  Aligned_cols=68  Identities=29%  Similarity=0.512  Sum_probs=63.4

Q ss_pred             hhHHHHHHHH-hccceecccCCCcEEEEEEe-CCEEEEEecCCCCCch----hHHHHHHHHHHhhCC-CcceEEeC
Q 038446          162 NEENIEKVLA-EIRPYLAGTGGGILELIQID-DYVVRVRLSGPAAGVM----TVRVALTQKLREKIP-SIAAVQLI  230 (231)
Q Consensus       162 t~e~V~~vL~-~IRP~L~~hdGGdvElV~v~-~~vv~VrL~GaC~gC~----Tlk~~Ie~~Lr~~iP-ei~~V~~v  230 (231)
                      ..++|+++|+ +|||+|++| |||+||++|+ +++|+|||+|+|+||+    |||++||++|++++| +|++|+.+
T Consensus       107 ~~~~i~~~l~~~irP~l~~d-GGdielv~v~~~~~v~v~l~GaC~gC~~s~~Tl~~~Ie~~l~~~~p~~i~~v~~v  181 (192)
T PRK11190        107 LMERVEYVLQSQINPQLAGH-GGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPGELKGVRDL  181 (192)
T ss_pred             HHHHHHHHHHhccChhHHhc-CCcEEEEEEcCCCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCHhhceEEEe
Confidence            3689999997 999999995 9999999997 6899999999999995    999999999999999 99999875

>KOG2358 consensus NifU-like domain-containing proteins [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=1.8e-13  Score=119.32  Aligned_cols=74  Identities=41%  Similarity=0.669  Sum_probs=68.8

Q ss_pred             HHHHHHHH-HhcCccccCCCeEEEEEEeC--cEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeeeeecccc
Q 038446           83 ENVERVLD-EVRPGLMADGGNVALHEIDG--LVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTE  156 (231)
Q Consensus        83 e~V~~vL~-~IRP~L~~dGGdVeLv~Ve~--~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~~v~~~~  156 (231)
                      ..++..|+ +|||.++.||||++++++|+  +.|++|++|+|.+||++..||+++||..|+.++|+++.|+++.+.+
T Consensus       126 ~~ikelietRiRp~i~edggdi~y~g~e~g~g~v~lklqgact~cpss~vtlk~Gie~mL~~y~~eVK~v~qv~d~e  202 (213)
T KOG2358|consen  126 MTIKELIETRIRPKIQEDGGDEDYVGFETGLGLVSLKLQGACTECPSSLVTLKNGIENMLEIYVPEVKGVIQVPDAE  202 (213)
T ss_pred             HHHHHHHHHhhhhhhhccCCceeeccccCccchHHHHHhhhhccCCcccchhhhhHHHHHHhhcceeeEEEeccCcc
Confidence            45777776 69999999999999999998  5999999999999999999999999999999999999999988765

>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function

Probab=95.73  E-value=0.087  Score=37.86  Aligned_cols=65  Identities=22%  Similarity=0.358  Sum_probs=47.8

Q ss_pred             HHHHHHHH-hccceeccc--CCCcEEEEEEeCCEEEEEecCCCCCch---hHHHHHHHHHHhhCCCcceEEe
Q 038446          164 ENIEKVLA-EIRPYLAGT--GGGILELIQIDDYVVRVRLSGPAAGVM---TVRVALTQKLREKIPSIAAVQL  229 (231)
Q Consensus       164 e~V~~vL~-~IRP~L~~h--dGGdvElV~v~~~vv~VrL~GaC~gC~---Tlk~~Ie~~Lr~~iPei~~V~~  229 (231)
                      +.|.++|. -.-|++...  +-|-+.=+.++++.|+|.+.=+..+|+   .++..|+++|+ .+|+++.|++
T Consensus         2 ~~V~~aL~~v~dP~~~~~iv~~g~V~~i~i~~~~V~v~l~l~~~~~~~~~~l~~~i~~~l~-~l~gv~~V~V   72 (72)
T PF01883_consen    2 QAVRDALKQVKDPELGKDIVELGMVRDISIEGGKVSVSLELPTPACPAAEPLREEIREALK-ALPGVKSVKV   72 (72)
T ss_dssp             HHHHHHHTT-BETTTSSBTTTTTSEEEEEECTCEEEEEE--SSTTHTTHHHHHHHHHHHHH-TSTT-SEEEE
T ss_pred             HHHHHHHhCCCCCCCCCCHHHcCCeeEEEEECCEEEEEEEECCCCchHHHHHHHHHHHHHH-hCCCCceEeC
Confidence            55667775 355655442  247888899999999999999988885   78899999999 7999998864

The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.

>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function

Probab=95.36  E-value=0.099  Score=37.57  Aligned_cols=67  Identities=25%  Similarity=0.387  Sum_probs=51.5

Q ss_pred             HHHHHHHHHH-hcCccc---cCCCeEEEEEEeCcEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeee
Q 038446           82 EENVERVLDE-VRPGLM---ADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVE  150 (231)
Q Consensus        82 ~e~V~~vL~~-IRP~L~---~dGGdVeLv~Ve~~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~  150 (231)
                      +++|..+|.. .-|++.   -+=|-|.=+.++++.|++.+.-...+|| ....++..|+++|+ .+|++.+|.
T Consensus         1 k~~V~~aL~~v~dP~~~~~iv~~g~V~~i~i~~~~V~v~l~l~~~~~~-~~~~l~~~i~~~l~-~l~gv~~V~   71 (72)
T PF01883_consen    1 KQAVRDALKQVKDPELGKDIVELGMVRDISIEGGKVSVSLELPTPACP-AAEPLREEIREALK-ALPGVKSVK   71 (72)
T ss_dssp             HHHHHHHHTT-BETTTSSBTTTTTSEEEEEECTCEEEEEE--SSTTHT-THHHHHHHHHHHHH-TSTT-SEEE
T ss_pred             CHHHHHHHhCCCCCCCCCCHHHcCCeeEEEEECCEEEEEEEECCCCch-HHHHHHHHHHHHHH-hCCCCceEe
Confidence            3678888864 556555   3447788899999999999999999999 67889999999999 788877664

The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.

>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT

Probab=83.00  E-value=21  Score=30.76  Aligned_cols=70  Identities=17%  Similarity=0.228  Sum_probs=49.5

Q ss_pred             cchhhHHHHHHHH-hccceeccc--CCCcEEEEEEeC---C--EEEEEecCCCCCch---hHHHHHHHHHHhhCCCcceE
Q 038446          159 LELNEENIEKVLA-EIRPYLAGT--GGGILELIQIDD---Y--VVRVRLSGPAAGVM---TVRVALTQKLREKIPSIAAV  227 (231)
Q Consensus       159 ~~lt~e~V~~vL~-~IRP~L~~h--dGGdvElV~v~~---~--vv~VrL~GaC~gC~---Tlk~~Ie~~Lr~~iPei~~V  227 (231)
                      .+.++++|.++|+ -.-|.+...  +-|-|.=+.+++   +  .|+|.++=...+|.   .++..|+++|.. +|.++.|
T Consensus        71 ~~~~ee~V~eaL~tV~DPei~~nIVeLGlV~~I~Id~~~~~~~~V~I~mtLt~p~c~~~~~L~~dV~~aL~~-l~gV~~V  149 (174)
T TIGR03406        71 GEDNEDQVWEQLRTVYDPEIPVNIVDLGLVYGCRVEKLGEGQFRVDIEMTLTAPGCGMGPVLVEDVEDKVLA-VPNVDEV  149 (174)
T ss_pred             ccccHHHHHHHHcCCCCCCCCCChHHcCCeEEEEEecccCCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHHh-CCCceeE
Confidence            3456788999997 466766541  135565567765   5  78888887777773   788888888864 7888876


Q ss_pred             Ee
Q 038446          228 QL  229 (231)
Q Consensus       228 ~~  229 (231)
                      .+
T Consensus       150 ~V  151 (174)
T TIGR03406       150 EV  151 (174)
T ss_pred             EE
Confidence            53

The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	231
2z51_A	154	Crystal Structure Of Arabidopsis Cnfu Involved In I		6e-64
2jnv_A	91	Solution Structure Of C-Terminal Domain Of Nifu-Lik		4e-26
2jnv_A	91	Solution Structure Of C-Terminal Domain Of Nifu-Lik		5e-07
1th5_A	74	Solution Structure Of C-Terminal Domain Of Nifu-Lik		5e-22
1xhj_A	88	Solution Structure Of The Staphylococcus Epidermidi		3e-14
1veh_A	92	Solution Structure Of Rsgi Ruh-018, A Nifu-Like Dom		1e-10

>pdb|2Z51|A Chain A, Crystal Structure Of Arabidopsis Cnfu Involved In Iron- Sulfur Cluster Biosynthesis Length = 154

Iteration: 1
 Score =  240 bits (612), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 119/153 (77%), Positives = 137/153 (89%)
Query: 78  LPLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIET 137
           +PLTEENVE VLDE+RP LM+DGGNVALHEIDG VV +KLQGACGSCPSSTMT+KMGIE 
Sbjct: 2   VPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIER 61
Query: 138 RLRDKIPEILEVEQILDTETGLELNEENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRV 197
           RL +KIPEI+ VE + D ETGLELNEENIEKVL EIRPYL GT  G L+L++I+D +V++
Sbjct: 62  RLMEKIPEIVAVEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKI 121
Query: 198 RLSGPAAGVMTVRVALTQKLREKIPSIAAVQLI 230
           R++GPAAGVMTVRVA+TQKLREKIPSIAAVQLI
Sbjct: 122 RITGPAAGVMTVRVAVTQKLREKIPSIAAVQLI 154

>pdb|2JNV|A Chain A, Solution Structure Of C-Terminal Domain Of Nifu-Like Protein From Oryza Sativa Length = 91

Iteration: 1
 Score =  114 bits (285), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 58/83 (69%), Positives = 66/83 (79%)
Query: 78  LPLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIET 137
           LPLT  NVE VLD+VRP L ADGG+VALHEI G VV LKLQGACGSCPSS +T+K GIE 
Sbjct: 3   LPLTAGNVESVLDQVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIER 62
Query: 138 RLRDKIPEILEVEQILDTETGLE 160
           RL +KIP++  VE + D ETGLE
Sbjct: 63  RLMEKIPDVAAVEPVTDKETGLE 85

>pdb|2JNV|A Chain A, Solution Structure Of C-Terminal Domain Of Nifu-Like Protein From Oryza Sativa Length = 91

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 158 GLELNEENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPA----AGVMTVRVAL 213
           GL L   N+E VL ++RPYL   GG +  L +I   VVR++L G      + ++T++  +
Sbjct: 2   GLPLTAGNVESVLDQVRPYLTADGGDV-ALHEIAGNVVRLKLQGACGSCPSSLITIKRGI 60
Query: 214 TQKLREKIPSIAAVQ 228
            ++L EKIP +AAV+
Sbjct: 61  ERRLMEKIPDVAAVE 75

>pdb|1TH5|A Chain A, Solution Structure Of C-Terminal Domain Of Nifu-Like Protein From Oryza Sativa Length = 74

Iteration: 1
 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 50/73 (68%), Positives = 61/73 (83%)
Query: 159 LELNEENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVMTVRVALTQKLR 218
           LELNEEN+EKVL EIRPYLAGTGGG L+ + I   +V+VRL+GPAA V TVR+A+++KLR
Sbjct: 2   LELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVRTVRIAVSKKLR 61
Query: 219 EKIPSIAAVQLID 231
           EKIPSI  VQL+ 
Sbjct: 62  EKIPSIQIVQLLS 74

>pdb|1XHJ|A Chain A, Solution Structure Of The Staphylococcus Epidermidis Protein Se0630. Northest Structural Genomics Consortium Target Ser8 Length = 88

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 53/75 (70%)
Query: 79  PLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETR 138
           P   + V  V++ +RP L+ DGG+  L +++  +V L+L GACG+CPSST+TLK GIE  
Sbjct: 6   PTMFDQVAEVIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERA 65
Query: 139 LRDKIPEILEVEQIL 153
           L +++P ++EVEQ+ 
Sbjct: 66  LHEEVPGVIEVEQVF 80

>pdb|1VEH|A Chain A, Solution Structure Of Rsgi Ruh-018, A Nifu-Like Domain Of Hirip5 Protein From Mouse Cdna Length = 92

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 85  VERVLD-EVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKI 143
           ++ +LD  +RP +  DGG+V     +  +V LKLQG+C SCPSS +TLK GI+  L+  I
Sbjct: 18  IKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYI 77
Query: 144 PEILEVEQILDTETG 158
           PE+  VEQ+    +G
Sbjct: 78  PEVEGVEQVSGPSSG 92

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	231
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	4e-64
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	1e-12
1xhj_A	88	Nitrogen fixation protein NIFU; alpha-beta, NIFU-l	2e-36
1xhj_A	88	Nitrogen fixation protein NIFU; alpha-beta, NIFU-l	3e-11
1veh_A	92	NIFU-like protein hirip5; structural genomics, mou	1e-33
1veh_A	92	NIFU-like protein hirip5; structural genomics, mou	1e-06
1th5_A	74	NIFU1; iron-sulfur cluster binding, structural gen	9e-31
1th5_A	74	NIFU1; iron-sulfur cluster binding, structural gen	1e-25

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A Length = 154

 Score =  195 bits (497), Expect = 4e-64
 Identities = 119/154 (77%), Positives = 138/154 (89%)

Query: 77  VLPLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIE 136
           ++PLTEENVE VLDE+RP LM+DGGNVALHEIDG VV +KLQGACGSCPSSTMT+KMGIE
Sbjct: 1   MVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIE 60

Query: 137 TRLRDKIPEILEVEQILDTETGLELNEENIEKVLAEIRPYLAGTGGGILELIQIDDYVVR 196
            RL +KIPEI+ VE + D ETGLELNEENIEKVL EIRPYL GT  G L+L++I+D +V+
Sbjct: 61  RRLMEKIPEIVAVEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVK 120

Query: 197 VRLSGPAAGVMTVRVALTQKLREKIPSIAAVQLI 230
           +R++GPAAGVMTVRVA+TQKLREKIPSIAAVQLI
Sbjct: 121 IRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLI 154

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A Length = 154

 Score = 62.5 bits (152), Expect = 1e-12
 Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 5/77 (6%)

Query: 159 LELNEENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAG----VMTVRVALT 214
           + L EEN+E VL EIRPYL   GG +  L +ID  VVRV+L G         MT+++ + 
Sbjct: 2   VPLTEENVESVLDEIRPYLMSDGGNV-ALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIE 60

Query: 215 QKLREKIPSIAAVQLID 231
           ++L EKIP I AV+ + 
Sbjct: 61  RRLMEKIPEIVAVEALP 77

>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1 Length = 88

 Score =  122 bits (309), Expect = 2e-36
 Identities = 34/78 (43%), Positives = 53/78 (67%)

Query: 79  PLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETR 138
           P   + V  V++ +RP L+ DGG+  L +++  +V L+L GACG+CPSST+TLK GIE  
Sbjct: 6   PTMFDQVAEVIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERA 65

Query: 139 LRDKIPEILEVEQILDTE 156
           L +++P ++EVEQ+    
Sbjct: 66  LHEEVPGVIEVEQVFLEH 83

>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1 Length = 88

 Score = 56.9 bits (138), Expect = 3e-11
 Identities = 16/72 (22%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 163 EENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAG----VMTVRVALTQKLR 218
            + + +V+  +RP+L   GG    L+ ++D +V+++L G         +T++  + + L 
Sbjct: 9   FDQVAEVIERLRPFLLRDGGDC-TLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALH 67

Query: 219 EKIPSIAAVQLI 230
           E++P +  V+ +
Sbjct: 68  EEVPGVIEVEQV 79

>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1 Length = 92

 Score =  115 bits (290), Expect = 1e-33
 Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 1/79 (1%)

Query: 81  TEENVERVLDE-VRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRL 139
               ++ +LD  +RP +  DGG+V     +  +V LKLQG+C SCPSS +TLK GI+  L
Sbjct: 14  VVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNML 73

Query: 140 RDKIPEILEVEQILDTETG 158
           +  IPE+  VEQ+    +G
Sbjct: 74  QFYIPEVEGVEQVSGPSSG 92

>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1 Length = 92

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 6/74 (8%)

Query: 163 EENIEKVLAE-IRPYLAGTGGGILELIQIDDYVVRVRLSGPAAG----VMTVRVALTQKL 217
              I+++L   IRP +   GG +      +D +VR++L G        ++T++  +   L
Sbjct: 15  VAMIKELLDTRIRPTVQEDGGDV-IYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNML 73

Query: 218 REKIPSIAAVQLID 231
           +  IP +  V+ + 
Sbjct: 74  QFYIPEVEGVEQVS 87

>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1 Length = 74

 Score =  107 bits (269), Expect = 9e-31
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 5/77 (6%)

Query: 77  VLPLTEENVERVLDEVRPGLMAD-GGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGI 135
           +L L EENVE+VL+E+RP L    GG +    I G +V ++L G      +   T+++ +
Sbjct: 1   MLELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPA----AVVRTVRIAV 56

Query: 136 ETRLRDKIPEILEVEQI 152
             +LR+KIP I  V+ +
Sbjct: 57  SKKLREKIPSIQIVQLL 73

>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1 Length = 74

 Score = 94.3 bits (235), Expect = 1e-25
 Identities = 50/72 (69%), Positives = 61/72 (84%)

Query: 159 LELNEENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVMTVRVALTQKLR 218
           LELNEEN+EKVL EIRPYLAGTGGG L+ + I   +V+VRL+GPAA V TVR+A+++KLR
Sbjct: 2   LELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVRTVRIAVSKKLR 61

Query: 219 EKIPSIAAVQLI 230
           EKIPSI  VQL+
Sbjct: 62  EKIPSIQIVQLL 73

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	231
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	100.0
1xhj_A	88	Nitrogen fixation protein NIFU; alpha-beta, NIFU-l	99.91
1th5_A	74	NIFU1; iron-sulfur cluster binding, structural gen	99.9
1veh_A	92	NIFU-like protein hirip5; structural genomics, mou	99.89
1xhj_A	88	Nitrogen fixation protein NIFU; alpha-beta, NIFU-l	99.86
1th5_A	74	NIFU1; iron-sulfur cluster binding, structural gen	99.85
1veh_A	92	NIFU-like protein hirip5; structural genomics, mou	99.83
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	99.79
3cq1_A	103	Putative uncharacterized protein TTHB138; DTDP-4-k	97.06
3cq1_A	103	Putative uncharacterized protein TTHB138; DTDP-4-k	97.05
1uwd_A	103	Hypothetical protein TM0487; similar to PAAD prote	96.43
1uwd_A	103	Hypothetical protein TM0487; similar to PAAD prote	96.12
3lno_A	108	Putative uncharacterized protein; alpha-beta fold,	95.5
3lno_A	108	Putative uncharacterized protein; alpha-beta fold,	94.84

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A

Probab=100.00  E-value=1.1e-49  Score=331.85  Aligned_cols=154  Identities=77%  Similarity=1.154  Sum_probs=148.2

Q ss_pred             CCCCcHHHHHHHHHHhcCccccCCCeEEEEEEeCcEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeeeeecccc
Q 038446           77 VLPLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTE  156 (231)
Q Consensus        77 ~~~lt~e~V~~vL~~IRP~L~~dGGdVeLv~Ve~~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~~v~~~~  156 (231)
                      ++|++.++|+++|++|||+|++|||||+|++|++++|||||+|+|++||++.+||+++||++|++++|++..|.++.+++
T Consensus         1 ~~~~~~e~v~~~L~~iRP~l~~dGGdvelv~v~~~~V~v~l~GaC~gC~ss~~Tlk~~Ie~~L~~~vpev~~V~~v~~~~   80 (154)
T 2z51_A            1 MVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEE   80 (154)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHTTEEEEEEEEETTEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTTCCEEEECCSSC
T ss_pred             CCcchHHHHHHHHHHhChHHHhcCCeEEEEEEECCEEEEEEECCCCCCCccHhHHHHHHHHHHHHhCCCceEEEEccCch
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             cccchhhHHHHHHHHhccceecccCCCcEEEEEEeCCEEEEEecCCCCCchhHHHHHHHHHHhhCCCcceEEeC
Q 038446          157 TGLELNEENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVMTVRVALTQKLREKIPSIAAVQLI  230 (231)
Q Consensus       157 ~~~~lt~e~V~~vL~~IRP~L~~hdGGdvElV~v~~~vv~VrL~GaC~gC~Tlk~~Ie~~Lr~~iPei~~V~~v  230 (231)
                      +++++++++|+++|++|||||+++||||+||++|++++|+|||+|+|++|+|+|++||++||+++|+|++|+.+
T Consensus        81 e~l~L~~~~v~~~L~~iRP~L~~~dGGdvelv~v~~~~v~v~l~Gac~~~~Tlk~~Ie~~l~e~vP~i~~V~~~  154 (154)
T 2z51_A           81 TGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKIRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLI  154 (154)
T ss_dssp             CSCCSSHHHHHHHHHHHGGGCCGGGCCEEEEEEEETTEEEEEEESGGGGCHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEEECCEEEEEEecCCcccHhHHHHHHHHHHHHCCCccEEEeC
Confidence            88899999999999999999997349999999999999999999999999999999999999999999999874

>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1

Probab=99.91  E-value=8.1e-25  Score=167.05  Aligned_cols=74  Identities=45%  Similarity=0.847  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHhcCccccCCCeEEEEEEeCcEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeeeeeccc
Q 038446           82 EENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDT  155 (231)
Q Consensus        82 ~e~V~~vL~~IRP~L~~dGGdVeLv~Ve~~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~~v~~~  155 (231)
                      .++|+++|++|||+|++|||||+|++|++++|||||+|+|+|||+|.+||+++||++|++++|++..|.++.++
T Consensus         9 ~~~I~~~L~~IRP~L~~dGGdvelv~v~~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V~~v~~~   82 (88)
T 1xhj_A            9 FDQVAEVIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQVFLE   82 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEEECC
T ss_pred             HHHHHHHHHHhcHHHHhcCCeEEEEEEECCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEEEecccc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999987654

>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1

Probab=99.90  E-value=2.1e-24  Score=159.93  Aligned_cols=71  Identities=68%  Similarity=0.996  Sum_probs=67.7

Q ss_pred             chhhHHHHHHHHhccceecccCC-CcEEEEEEeCCEEEEEecCCCCCchhHHHHHHHHHHhhCCCcceEEeCC
Q 038446          160 ELNEENIEKVLAEIRPYLAGTGG-GILELIQIDDYVVRVRLSGPAAGVMTVRVALTQKLREKIPSIAAVQLID  231 (231)
Q Consensus       160 ~lt~e~V~~vL~~IRP~L~~hdG-GdvElV~v~~~vv~VrL~GaC~gC~Tlk~~Ie~~Lr~~iPei~~V~~v~  231 (231)
                      +++.++|+++|++|||||++| | ||+||++|++++|+|||+|+|++|+|||++||++|++++|++++|+.++
T Consensus         3 ~~~~~~V~~~L~~iRP~L~~d-GGGdvelv~v~~g~V~v~l~GaC~gc~Tlk~gIe~~L~~~vpei~~V~~v~   74 (74)
T 1th5_A            3 ELNEENVEKVLNEIRPYLAGT-GGGGLQFLMIKGPIVKVRLTGPAAVVRTVRIAVSKKLREKIPSIQIVQLLS   74 (74)
T ss_dssp             CCSHHHHHHHHTTTHHHHTTT-TCCCCCCCEEETTEEEECCCSSSSSSSSHHHHHHHHHHHHCTTCSEEEECC
T ss_pred             hHHHHHHHHHHHHHhHHHHhc-CCCcEEEEEEeCCEEEEEEecCCcchHHHHHHHHHHHHHHCCCCcEEEeCC
Confidence            567899999999999999996 7 9999999999999999999999999999999999999999999999874

>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1

Probab=99.89  E-value=6.7e-24  Score=163.13  Aligned_cols=76  Identities=42%  Similarity=0.685  Sum_probs=71.8

Q ss_pred             cHHHHHHHHHH-hcCccccCCCeEEEEEEeCcEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeeeeecccc
Q 038446           81 TEENVERVLDE-VRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTE  156 (231)
Q Consensus        81 t~e~V~~vL~~-IRP~L~~dGGdVeLv~Ve~~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~~v~~~~  156 (231)
                      ..++|+.+|++ |||+|++|||||+|++|++++|||||+|+|++||++.+||+++||++|++++|++..|+.+.+++
T Consensus        14 ~~~~I~~~L~~~IRP~L~~dGGdvelv~v~~g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~~V~~v~~~~   90 (92)
T 1veh_A           14 VVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQVSGPS   90 (92)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHSCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEEECSCSC
T ss_pred             HHHHHHHHHHHHhhHHHHhcCCeEEEEEEeCCEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCCEEEEcCCCC
Confidence            36789999985 99999999999999999999999999999999999999999999999999999999999887665

>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1

Probab=99.86  E-value=1.6e-22  Score=154.33  Aligned_cols=67  Identities=24%  Similarity=0.579  Sum_probs=64.0

Q ss_pred             hHHHHHHHHhccceecccCCCcEEEEEEeCCEEEEEecCCCCCch----hHHHHHHHHHHhhCCCcceEEeC
Q 038446          163 EENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVM----TVRVALTQKLREKIPSIAAVQLI  230 (231)
Q Consensus       163 ~e~V~~vL~~IRP~L~~hdGGdvElV~v~~~vv~VrL~GaC~gC~----Tlk~~Ie~~Lr~~iPei~~V~~v  230 (231)
                      .++|+++|++|||+|++ ||||+||++|++++|+|||+|+|+||+    |||++||++|++++|+|+.|+.+
T Consensus         9 ~~~I~~~L~~IRP~L~~-dGGdvelv~v~~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V~~v   79 (88)
T 1xhj_A            9 FDQVAEVIERLRPFLLR-DGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQV   79 (88)
T ss_dssp             HHHHHHHHHHHHHHHHH-HSCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred             HHHHHHHHHHhcHHHHh-cCCeEEEEEEECCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEEEec
Confidence            68999999999999999 599999999999999999999999994    99999999999999999999875

>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1

Probab=99.85  E-value=3.8e-22  Score=147.82  Aligned_cols=71  Identities=39%  Similarity=0.687  Sum_probs=67.7

Q ss_pred             CCCcHHHHHHHHHHhcCccccCC-CeEEEEEEeCcEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeeeee
Q 038446           78 LPLTEENVERVLDEVRPGLMADG-GNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQI  152 (231)
Q Consensus        78 ~~lt~e~V~~vL~~IRP~L~~dG-GdVeLv~Ve~~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~~v  152 (231)
                      ++++.++|+++|++|||+|++|| ||++|++|++++|+|||+|+|++|    +||+++||++|++++|++.+|+++
T Consensus         2 ~~~~~~~V~~~L~~iRP~L~~dGGGdvelv~v~~g~V~v~l~GaC~gc----~Tlk~gIe~~L~~~vpei~~V~~v   73 (74)
T 1th5_A            2 LELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVV----RTVRIAVSKKLREKIPSIQIVQLL   73 (74)
T ss_dssp             CCCSHHHHHHHHTTTHHHHTTTTCCCCCCCEEETTEEEECCCSSSSSS----SSHHHHHHHHHHHHCTTCSEEEEC
T ss_pred             hhHHHHHHHHHHHHHhHHHHhcCCCcEEEEEEeCCEEEEEEecCCcch----HHHHHHHHHHHHHHCCCCcEEEeC
Confidence            47889999999999999999999 999999999999999999999999    699999999999999999998865

>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1

Probab=99.83  E-value=2.7e-21  Score=148.61  Aligned_cols=68  Identities=25%  Similarity=0.427  Sum_probs=64.2

Q ss_pred             hhHHHHHHHH-hccceecccCCCcEEEEEEeCCEEEEEecCCCCCch----hHHHHHHHHHHhhCCCcceEEeC
Q 038446          162 NEENIEKVLA-EIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVM----TVRVALTQKLREKIPSIAAVQLI  230 (231)
Q Consensus       162 t~e~V~~vL~-~IRP~L~~hdGGdvElV~v~~~vv~VrL~GaC~gC~----Tlk~~Ie~~Lr~~iPei~~V~~v  230 (231)
                      ..++|+++|+ +|||+|++| |||+||++|++++|+|||+|+|+||+    |||++||++|++++|++++|+.+
T Consensus        14 ~~~~I~~~L~~~IRP~L~~d-GGdvelv~v~~g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~~V~~v   86 (92)
T 1veh_A           14 VVAMIKELLDTRIRPTVQED-GGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQV   86 (92)
T ss_dssp             HHHHHHHHHHHTTHHHHHHH-SCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEEEC
T ss_pred             HHHHHHHHHHHHhhHHHHhc-CCeEEEEEEeCCEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCCEEEEc
Confidence            3688999998 699999995 99999999999999999999999994    99999999999999999999876

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A

Probab=99.79  E-value=2.9e-19  Score=148.60  Aligned_cols=76  Identities=36%  Similarity=0.632  Sum_probs=70.3

Q ss_pred             ccCCCCCCCcHHHHHHHHHHhcCcccc-CCCeEEEEEEeCcEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeee
Q 038446           72 VSPCCVLPLTEENVERVLDEVRPGLMA-DGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVE  150 (231)
Q Consensus        72 ~~p~~~~~lt~e~V~~vL~~IRP~L~~-dGGdVeLv~Ve~~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~  150 (231)
                      ..|...+++++++|+++|++|||+|++ ||||+||++|++++|+|||+|+|++|    +|++++||++|++++|++.+|+
T Consensus        77 ~~~~e~l~L~~~~v~~~L~~iRP~L~~~dGGdvelv~v~~~~v~v~l~Gac~~~----~Tlk~~Ie~~l~e~vP~i~~V~  152 (154)
T 2z51_A           77 PDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKIRITGPAAGV----MTVRVAVTQKLREKIPSIAAVQ  152 (154)
T ss_dssp             CSSCCSCCSSHHHHHHHHHHHGGGCCGGGCCEEEEEEEETTEEEEEEESGGGGC----HHHHHHHHHHHHHHCTTCCEEE
T ss_pred             cCchhhhHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEEECCEEEEEEecCCccc----HhHHHHHHHHHHHHCCCccEEE
Confidence            344556799999999999999999997 99999999999999999999999988    7999999999999999999987


Q ss_pred             e
Q 038446          151 Q  151 (231)
Q Consensus       151 ~  151 (231)
                      .
T Consensus       153 ~  153 (154)
T 2z51_A          153 L  153 (154)
T ss_dssp             E
T ss_pred             e
Confidence            5

>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*

Probab=97.06  E-value=0.0027  Score=48.12  Aligned_cols=66  Identities=20%  Similarity=0.278  Sum_probs=55.8

Q ss_pred             hhHHHHHHHHh-ccceecccCC---CcEEEEEEeCCEEEEEecCCCCCch---hHHHHHHHHHHhhCCCcceEEe
Q 038446          162 NEENIEKVLAE-IRPYLAGTGG---GILELIQIDDYVVRVRLSGPAAGVM---TVRVALTQKLREKIPSIAAVQL  229 (231)
Q Consensus       162 t~e~V~~vL~~-IRP~L~~hdG---GdvElV~v~~~vv~VrL~GaC~gC~---Tlk~~Ie~~Lr~~iPei~~V~~  229 (231)
                      +++.|.++|+. +.|.+.. +-   |-|.=+.++++.|+|.++-.+.+|+   +++..|+++|+ .+|++..|.+
T Consensus         7 ~~~~V~~aL~~V~DPel~~-~iv~lG~V~~v~v~~~~V~v~l~lt~~~cp~~~~l~~~i~~al~-~l~gv~~V~V   79 (103)
T 3cq1_A            7 LEAQAWALLEAVYDPELGL-DVVNLGLIYDLVVEPPRAYVRMTLTTPGCPLHDSLGEAVRQALS-RLPGVEEVEV   79 (103)
T ss_dssp             HHHHHHHHHTTCBCTTTCS-BTTTTTCEEEEEEETTEEEEEECCSSSSCCSSCHHHHHHHHHHH-TSTTCCEEEE
T ss_pred             HHHHHHHHHhCCCCCCCCc-CchhcCceEEEEEECCEEEEEEEECCCCCcHHHHHHHHHHHHHH-hCCCceeEEE
Confidence            46788888974 7788877 45   8888899999999999999999996   89999999997 5899988764

>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*

Probab=97.05  E-value=0.0021  Score=48.66  Aligned_cols=68  Identities=21%  Similarity=0.280  Sum_probs=58.1

Q ss_pred             cHHHHHHHHHH-hcCccccCC---CeEEEEEEeCcEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeee
Q 038446           81 TEENVERVLDE-VRPGLMADG---GNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVE  150 (231)
Q Consensus        81 t~e~V~~vL~~-IRP~L~~dG---GdVeLv~Ve~~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~  150 (231)
                      ++++|..+|+. +-|.+..+-   |-|.=++++++.|+|.+...+.+||. ...++..|+++|+ .+|.+.+|.
T Consensus         7 ~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~~V~v~l~lt~~~cp~-~~~l~~~i~~al~-~l~gv~~V~   78 (103)
T 3cq1_A            7 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPL-HDSLGEAVRQALS-RLPGVEEVE   78 (103)
T ss_dssp             HHHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEETTEEEEEECCSSSSCCS-SCHHHHHHHHHHH-TSTTCCEEE
T ss_pred             HHHHHHHHHhCCCCCCCCcCchhcCceEEEEEECCEEEEEEEECCCCCcH-HHHHHHHHHHHHH-hCCCceeEE
Confidence            57889999986 789888766   88988999999999999999999998 5688899999997 478776654

>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A

Probab=96.43  E-value=0.011  Score=44.63  Aligned_cols=69  Identities=26%  Similarity=0.235  Sum_probs=56.0

Q ss_pred             CcHHHHHHHHHHhc-CccccCC---CeEEEEEEeC-cEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeee
Q 038446           80 LTEENVERVLDEVR-PGLMADG---GNVALHEIDG-LVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVE  150 (231)
Q Consensus        80 lt~e~V~~vL~~IR-P~L~~dG---GdVeLv~Ve~-~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~  150 (231)
                      ++.++|..+|+.|. |.+..+-   |-|.=+++++ +.|+|.+.-.+.+||. ...++..|+++|++ +|.+.+|.
T Consensus         6 ~~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~~~V~v~l~lt~~~cp~-~~~l~~~i~~al~~-l~gv~~v~   79 (103)
T 1uwd_A            6 VTKEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPL-AGMILSDAEEAIKK-IEGVNNVE   79 (103)
T ss_dssp             CCHHHHHHHHTTCBCTTTSSBTTTTTCCCCEEECTTCEEEEEECCSSSCCSS-HHHHHHHHHHHHHT-SSSCCEEE
T ss_pred             chHHHHHHHHcCCCCCCCCcChhhcCCeeEEEEcCCCEEEEEEEECCCCCcH-HHHHHHHHHHHHHh-CCCcceEE
Confidence            56889999998755 8887554   6677788886 8999999999999997 67888999999974 77776654

>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A

Probab=96.12  E-value=0.012  Score=44.31  Aligned_cols=66  Identities=21%  Similarity=0.252  Sum_probs=52.1

Q ss_pred             hhHHHHHHHHhcc-ceecccCC---CcEEEEEEeC-CEEEEEecCCCCCch---hHHHHHHHHHHhhCCCcceEEe
Q 038446          162 NEENIEKVLAEIR-PYLAGTGG---GILELIQIDD-YVVRVRLSGPAAGVM---TVRVALTQKLREKIPSIAAVQL  229 (231)
Q Consensus       162 t~e~V~~vL~~IR-P~L~~hdG---GdvElV~v~~-~vv~VrL~GaC~gC~---Tlk~~Ie~~Lr~~iPei~~V~~  229 (231)
                      +.+.|.++|+.+. |.+.. +-   |-|.=+.+++ +.|+|.++-...+|+   .++..|+++|+ .+|++..|.+
T Consensus         7 ~~~~V~~aL~~V~DPel~~-~iv~lG~V~~v~v~~~~~V~v~l~lt~~~cp~~~~l~~~i~~al~-~l~gv~~v~V   80 (103)
T 1uwd_A            7 TKEDVLNALKNVIDFELGL-DVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGMILSDAEEAIK-KIEGVNNVEV   80 (103)
T ss_dssp             CHHHHHHHHTTCBCTTTSS-BTTTTTCCCCEEECTTCEEEEEECCSSSCCSSHHHHHHHHHHHHH-TSSSCCEEEE
T ss_pred             hHHHHHHHHcCCCCCCCCc-ChhhcCCeeEEEEcCCCEEEEEEEECCCCCcHHHHHHHHHHHHHH-hCCCcceEEE
Confidence            4677888888544 87766 34   6677778885 899999999999995   88899999997 4899887764

>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0

Probab=95.50  E-value=0.03  Score=42.74  Aligned_cols=69  Identities=14%  Similarity=0.251  Sum_probs=53.8

Q ss_pred             hhhHHHHHHHHh-ccceeccc--CCCcEEEEEEeC-CEEEEEecCCCCCch---hHHHHHHHHHHhhCCCcceEEe
Q 038446          161 LNEENIEKVLAE-IRPYLAGT--GGGILELIQIDD-YVVRVRLSGPAAGVM---TVRVALTQKLREKIPSIAAVQL  229 (231)
Q Consensus       161 lt~e~V~~vL~~-IRP~L~~h--dGGdvElV~v~~-~vv~VrL~GaC~gC~---Tlk~~Ie~~Lr~~iPei~~V~~  229 (231)
                      .+.+.|.++|.. .-|.+...  +-|-|.=+.+++ +.|.|.++=...+|+   .++..|+++|+..+|++..|.+
T Consensus         8 ~~~~~V~~aL~~V~DPe~~~~Iv~lG~V~~I~v~~~~~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V   83 (108)
T 3lno_A            8 AFENKLYANLEAVIDPELGVDIVNLGLVYDVTADENNNAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEV   83 (108)
T ss_dssp             HHHHHHHHHGGGCEETTTTEEHHHHTCEEEEEECTTCCEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEE
T ss_pred             hhHHHHHHHHcCCCCCCCCCCHHHcCCceEEEECCCCeEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEE
Confidence            456777888874 56766541  247788888885 899999999999995   8899999999777999988764

>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0

Probab=94.84  E-value=0.05  Score=41.49  Aligned_cols=71  Identities=23%  Similarity=0.281  Sum_probs=55.8

Q ss_pred             CcHHHHHHHHHH-hcCccccC---CCeEEEEEEeC-cEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeeee
Q 038446           80 LTEENVERVLDE-VRPGLMAD---GGNVALHEIDG-LVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQ  151 (231)
Q Consensus        80 lt~e~V~~vL~~-IRP~L~~d---GGdVeLv~Ve~-~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~~  151 (231)
                      .+.++|..+|.. +-|.+..+   -|-|.=+.+++ +.|+|.+.-...+||.. ..++..|+++|+..+|.+.+|..
T Consensus         8 ~~~~~V~~aL~~V~DPe~~~~Iv~lG~V~~I~v~~~~~V~V~ltlt~p~cp~~-~~i~~~i~~al~~~l~Gv~~V~V   83 (108)
T 3lno_A            8 AFENKLYANLEAVIDPELGVDIVNLGLVYDVTADENNNAVITMTMTSIGCPMA-GQIVSDVKKVLSTNVPEVNEIEV   83 (108)
T ss_dssp             HHHHHHHHHGGGCEETTTTEEHHHHTCEEEEEECTTCCEEEEECCSCTTCTTH-HHHHHHHHHHHHHHCTTCCCEEE
T ss_pred             hhHHHHHHHHcCCCCCCCCCCHHHcCCceEEEECCCCeEEEEEEECCCCCcHH-HHHHHHHHHHHHHhCCCCceEEE
Confidence            356788888876 57776532   47788888885 89999999999999975 58889999999667898877653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	231
d1xhja_	88	d.52.8.1 (A:) Nitrogen fixation protein NifU homol	3e-28
d1xhja_	88	d.52.8.1 (A:) Nitrogen fixation protein NifU homol	1e-14
d1th5a1	73	d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {	5e-26
d1th5a1	73	d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {	1e-23
d1veha_	92	d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {	1e-25
d1veha_	92	d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {	2e-07

>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]} Length = 88

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: Nitrogen fixation protein NifU homolog SE0630
species: Staphylococcus epidermidis [TaxId: 1282]

 Score =  100 bits (251), Expect = 3e-28
 Identities = 33/73 (45%), Positives = 52/73 (71%)

Query: 82  EENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRD 141
            + V  V++ +RP L+ DGG+  L +++  +V L+L GACG+CPSST+TLK GIE  L +
Sbjct: 9   FDQVAEVIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHE 68

Query: 142 KIPEILEVEQILD 154
           ++P ++EVEQ+  
Sbjct: 69  EVPGVIEVEQVFL 81

>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]} Length = 88

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: Nitrogen fixation protein NifU homolog SE0630
species: Staphylococcus epidermidis [TaxId: 1282]

 Score = 64.8 bits (158), Expect = 1e-14
 Identities = 16/73 (21%), Positives = 39/73 (53%), Gaps = 5/73 (6%)

Query: 163 EENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAG----VMTVRVALTQKLR 218
            + + +V+  +RP+L   GG    L+ ++D +V+++L G         +T++  + + L 
Sbjct: 9   FDQVAEVIERLRPFLLRDGGDC-TLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALH 67

Query: 219 EKIPSIAAVQLID 231
           E++P +  V+ + 
Sbjct: 68  EEVPGVIEVEQVF 80

>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]} Length = 73

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: NifU-like protein 1, NIFUL1
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 94.0 bits (234), Expect = 5e-26
 Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 5/76 (6%)

Query: 78  LPLTEENVERVLDEVRPGLMA-DGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIE 136
           L L EENVE+VL+E+RP L    GG +    I G +V ++L G          T+++ + 
Sbjct: 1   LELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVV----RTVRIAVS 56

Query: 137 TRLRDKIPEILEVEQI 152
            +LR+KIP I  V+ +
Sbjct: 57  KKLREKIPSIQIVQLL 72

>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]} Length = 73

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: NifU-like protein 1, NIFUL1
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 87.9 bits (218), Expect = 1e-23
 Identities = 50/73 (68%), Positives = 61/73 (83%)

Query: 159 LELNEENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVMTVRVALTQKLR 218
           LELNEEN+EKVL EIRPYLAGTGGG L+ + I   +V+VRL+GPAA V TVR+A+++KLR
Sbjct: 1   LELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVRTVRIAVSKKLR 60

Query: 219 EKIPSIAAVQLID 231
           EKIPSI  VQL+ 
Sbjct: 61  EKIPSIQIVQLLS 73

>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 92

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: HIRA-interacting protein 5, HIRIP5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.8 bits (233), Expect = 1e-25
 Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 1/79 (1%)

Query: 81  TEENVERVLDE-VRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRL 139
               ++ +LD  +RP +  DGG+V     +  +V LKLQG+C SCPSS +TLK GI+  L
Sbjct: 14  VVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNML 73

Query: 140 RDKIPEILEVEQILDTETG 158
           +  IPE+  VEQ+    +G
Sbjct: 74  QFYIPEVEGVEQVSGPSSG 92

>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 92

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: HIRA-interacting protein 5, HIRIP5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.6 bits (108), Expect = 2e-07
 Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 9/84 (10%)

Query: 156 ETGLELNEE---NIEKVL-AEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAG----VM 207
            +G E ++E    I+++L   IRP +   GG +      +D +VR++L G        ++
Sbjct: 5   SSGSEEDDEVVAMIKELLDTRIRPTVQEDGGDV-IYRGFEDGIVRLKLQGSCTSCPSSII 63

Query: 208 TVRVALTQKLREKIPSIAAVQLID 231
           T++  +   L+  IP +  V+ + 
Sbjct: 64  TLKSGIQNMLQFYIPEVEGVEQVS 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	231
d1th5a1	73	NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [	99.91
d1xhja_	88	Nitrogen fixation protein NifU homolog SE0630 {Sta	99.9
d1veha_	92	HIRA-interacting protein 5, HIRIP5 {Mouse (Mus mus	99.88
d1xhja_	88	Nitrogen fixation protein NifU homolog SE0630 {Sta	99.85
d1th5a1	73	NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [	99.85
d1veha_	92	HIRA-interacting protein 5, HIRIP5 {Mouse (Mus mus	99.83
d2cu6a1	91	Hypothetical protein TTHB138 {Thermus thermophilus	93.14
d2cu6a1	91	Hypothetical protein TTHB138 {Thermus thermophilus	92.86
d1uwda_	102	Hypothetical protein TM0487 {Thermotoga maritima [	92.4
d1uwda_	102	Hypothetical protein TM0487 {Thermotoga maritima [	91.09
d1p6ta1	72	Potential copper-translocating P-type ATPase CopA	87.99
d1osda_	72	Mercuric ion binding protein MerP {Ralstonia metal	85.73
d1q8la_	84	Menkes copper-transporting ATPase {Human (Homo sap	83.89
d2ggpb1	72	Copper transporter domain ccc2a {Baker's yeast (Sa	83.11

>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: NifU-like protein 1, NIFUL1
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.91  E-value=1.5e-25  Score=163.98  Aligned_cols=73  Identities=68%  Similarity=1.017  Sum_probs=68.8

Q ss_pred             cchhhHHHHHHHHhccceecccCCCcEEEEEEeCCEEEEEecCCCCCchhHHHHHHHHHHhhCCCcceEEeCC
Q 038446          159 LELNEENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVMTVRVALTQKLREKIPSIAAVQLID  231 (231)
Q Consensus       159 ~~lt~e~V~~vL~~IRP~L~~hdGGdvElV~v~~~vv~VrL~GaC~gC~Tlk~~Ie~~Lr~~iPei~~V~~v~  231 (231)
                      +++++++|+++|++|||||+.+||||++|+++++++|+|||+|+|+||+|||++||++|++++|+|+.|+.++
T Consensus         1 mel~ee~V~~vL~eirP~l~a~dGGdvelv~i~~~~v~v~l~GaC~gC~Tl~~gIe~~L~~~iPei~~V~~v~   73 (73)
T d1th5a1           1 LELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVRTVRIAVSKKLREKIPSIQIVQLLS   73 (73)
T ss_dssp             CCCSHHHHHHHHTTTHHHHTTTTCCCCCCCEEETTEEEECCCSSSSSSSSHHHHHHHHHHHHCTTCSEEEECC
T ss_pred             CCCCHHHHHHHHHHhcccccccCCceEEEEEecCCEEEEEecCCCcccchHHHHHHHHHHHHCCCccEEEecC
Confidence            4678999999999999999843599999999999999999999999999999999999999999999999886

>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: Nitrogen fixation protein NifU homolog SE0630
species: Staphylococcus epidermidis [TaxId: 1282]

Probab=99.90  E-value=1.8e-24  Score=163.25  Aligned_cols=79  Identities=43%  Similarity=0.822  Sum_probs=72.7

Q ss_pred             CCCCCCCcHHHHHHHHHHhcCccccCCCeEEEEEEeCcEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeeeeec
Q 038446           74 PCCVLPLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIL  153 (231)
Q Consensus        74 p~~~~~lt~e~V~~vL~~IRP~L~~dGGdVeLv~Ve~~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~~v~  153 (231)
                      |....++ .++|+++|++|||+|++|||||+|++|++++|||||+|+|++||++.+|++++||+.|++++|++..|+.+.
T Consensus         2 p~~~~~l-~~~I~~vLe~IRP~l~~dGGdvelv~v~~g~V~v~l~GaC~gC~~s~~Tlk~~Ie~~L~~~vpev~~V~~V~   80 (88)
T d1xhja_           2 PTENPTM-FDQVAEVIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQVF   80 (88)
T ss_dssp             CCCCSCH-HHHHHHHHHHHHHHHHHHSCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEEE
T ss_pred             CCCcHHH-HHHHHHHHHHhhHHHHhCCCcEEEEeccCCEEEEEecCCCCCCccHHHHHHHHHHHHHHHHCCCCceEEEec
Confidence            3344444 789999999999999999999999999999999999999999999999999999999999999999998863

>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: HIRA-interacting protein 5, HIRIP5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=8.6e-24  Score=160.71  Aligned_cols=77  Identities=42%  Similarity=0.685  Sum_probs=72.5

Q ss_pred             cHHHHHHHHH-HhcCccccCCCeEEEEEEeCcEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeeeeeccccc
Q 038446           81 TEENVERVLD-EVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTET  157 (231)
Q Consensus        81 t~e~V~~vL~-~IRP~L~~dGGdVeLv~Ve~~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~~v~~~~~  157 (231)
                      ..++|+.+|+ +|||+|++|||||+|++|++++|||+|.|+|++||++.+||+++||+.|++++|++..|+.+.+|+.
T Consensus        14 ~~~~I~~vL~~~IrP~l~~dGGdv~lv~v~~g~V~v~l~GaC~gCp~s~~Tlk~~Ie~~L~~~vpev~~V~~v~~~~~   91 (92)
T d1veha_          14 VVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQVSGPSS   91 (92)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHSCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEEECSCSCC
T ss_pred             HHHHHHHHHHHhcChHHHHcCCceEEEEeeCCeEEEEEccCCCCChhHHHHHHHHHHHHHHHHCCCcceEEEcCCCCC
Confidence            3578999998 5999999999999999999999999999999999999999999999999999999999999887754

>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: Nitrogen fixation protein NifU homolog SE0630
species: Staphylococcus epidermidis [TaxId: 1282]

Probab=99.85  E-value=4.2e-22  Score=150.17  Aligned_cols=68  Identities=24%  Similarity=0.559  Sum_probs=64.4

Q ss_pred             hhHHHHHHHHhccceecccCCCcEEEEEEeCCEEEEEecCCCCCch----hHHHHHHHHHHhhCCCcceEEeC
Q 038446          162 NEENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVM----TVRVALTQKLREKIPSIAAVQLI  230 (231)
Q Consensus       162 t~e~V~~vL~~IRP~L~~hdGGdvElV~v~~~vv~VrL~GaC~gC~----Tlk~~Ie~~Lr~~iPei~~V~~v  230 (231)
                      ..++|+++|++|||||++| |||++|+++++++|+|||+|+|+||+    |+|++||++|++++|+++.|+.|
T Consensus         8 l~~~I~~vLe~IRP~l~~d-GGdvelv~v~~g~V~v~l~GaC~gC~~s~~Tlk~~Ie~~L~~~vpev~~V~~V   79 (88)
T d1xhja_           8 MFDQVAEVIERLRPFLLRD-GGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQV   79 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-SCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred             HHHHHHHHHHHhhHHHHhC-CCcEEEEeccCCEEEEEecCCCCCCccHHHHHHHHHHHHHHHHCCCCceEEEe
Confidence            3689999999999999995 99999999999999999999999994    99999999999999999999875

>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: NifU-like protein 1, NIFUL1
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.85  E-value=1.6e-22  Score=147.79  Aligned_cols=71  Identities=39%  Similarity=0.691  Sum_probs=66.9

Q ss_pred             CCCcHHHHHHHHHHhcCccc-cCCCeEEEEEEeCcEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeeeee
Q 038446           78 LPLTEENVERVLDEVRPGLM-ADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQI  152 (231)
Q Consensus        78 ~~lt~e~V~~vL~~IRP~L~-~dGGdVeLv~Ve~~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~~v  152 (231)
                      |++++|+|+.+|++|||+|+ +|||||+|+++++++|+|||+|+|++|+    |++++||+.|++++|++..|+.+
T Consensus         1 mel~ee~V~~vL~eirP~l~a~dGGdvelv~i~~~~v~v~l~GaC~gC~----Tl~~gIe~~L~~~iPei~~V~~v   72 (73)
T d1th5a1           1 LELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVR----TVRIAVSKKLREKIPSIQIVQLL   72 (73)
T ss_dssp             CCCSHHHHHHHHTTTHHHHTTTTCCCCCCCEEETTEEEECCCSSSSSSS----SHHHHHHHHHHHHCTTCSEEEEC
T ss_pred             CCCCHHHHHHHHHHhcccccccCCceEEEEEecCCEEEEEecCCCcccc----hHHHHHHHHHHHHCCCccEEEec
Confidence            57899999999999999998 6999999999999999999999999993    99999999999999999888754

>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: HIRA-interacting protein 5, HIRIP5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=2.2e-21  Score=147.29  Aligned_cols=71  Identities=24%  Similarity=0.411  Sum_probs=65.8

Q ss_pred             chhhHHHHHHHH-hccceecccCCCcEEEEEEeCCEEEEEecCCCCCch----hHHHHHHHHHHhhCCCcceEEeCC
Q 038446          160 ELNEENIEKVLA-EIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVM----TVRVALTQKLREKIPSIAAVQLID  231 (231)
Q Consensus       160 ~lt~e~V~~vL~-~IRP~L~~hdGGdvElV~v~~~vv~VrL~GaC~gC~----Tlk~~Ie~~Lr~~iPei~~V~~v~  231 (231)
                      +-..++|+++|+ +|||||++| ||||+|++|++++|+|||+|+|++|+    |||++||++||+++|+|+.|+.++
T Consensus        12 ~e~~~~I~~vL~~~IrP~l~~d-GGdv~lv~v~~g~V~v~l~GaC~gCp~s~~Tlk~~Ie~~L~~~vpev~~V~~v~   87 (92)
T d1veha_          12 DEVVAMIKELLDTRIRPTVQED-GGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQVS   87 (92)
T ss_dssp             CHHHHHHHHHHHHTTHHHHHHH-SCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEEECS
T ss_pred             HHHHHHHHHHHHHhcChHHHHc-CCceEEEEeeCCeEEEEEccCCCCChhHHHHHHHHHHHHHHHHCCCcceEEEcC
Confidence            344689999998 799999996 99999999999999999999999995    999999999999999999999874

>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TTHB138
species: Thermus thermophilus [TaxId: 274]

Probab=93.14  E-value=0.22  Score=35.19  Aligned_cols=66  Identities=20%  Similarity=0.279  Sum_probs=49.8

Q ss_pred             hHHHHHHHH-hccceeccc--CCCcEEEEEEeCCEEEEEecCCCCCch---hHHHHHHHHHHhhCCCcceEEe
Q 038446          163 EENIEKVLA-EIRPYLAGT--GGGILELIQIDDYVVRVRLSGPAAGVM---TVRVALTQKLREKIPSIAAVQL  229 (231)
Q Consensus       163 ~e~V~~vL~-~IRP~L~~h--dGGdvElV~v~~~vv~VrL~GaC~gC~---Tlk~~Ie~~Lr~~iPei~~V~~  229 (231)
                      +++|.++|. -+-|.+...  +=|=|.=+.++++.++|.+.=...+|+   .+++.|+++|+ .+|++..|.+
T Consensus         3 e~~v~eaL~~V~DPe~~~dIv~LGlV~~i~i~~~~v~v~l~lt~~~cp~~~~i~~~i~~al~-~l~gv~~V~V   74 (91)
T d2cu6a1           3 EAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPLHDSLGEAVRQALS-RLPGVEEVEV   74 (91)
T ss_dssp             HHHHHHHHTTCEETTTTEETTTTTCEEEEEEETTEEEEEECCSSSSCCSSCHHHHHHHHHHH-TSTTCCEEEE
T ss_pred             HHHHHHHHhcCCCCCCCcChhhccceeEEEEeccccEEEEEcCCCCCcHHHHHHHHHHHHHH-cCCCCceEEE
Confidence            355666665 345544331  347788889999999999999999996   78899999997 4899988754

>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TTHB138
species: Thermus thermophilus [TaxId: 274]

Probab=92.86  E-value=0.23  Score=35.12  Aligned_cols=68  Identities=19%  Similarity=0.268  Sum_probs=53.3

Q ss_pred             HHHHHHHHHH-hcCccc---cCCCeEEEEEEeCcEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeeee
Q 038446           82 EENVERVLDE-VRPGLM---ADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQ  151 (231)
Q Consensus        82 ~e~V~~vL~~-IRP~L~---~dGGdVeLv~Ve~~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~~  151 (231)
                      +++|..+|.. +-|.+.   -+=|=|.=+.|+++.+++.+.-...+||... .+.+.|+++|+. +|.+.+|..
T Consensus         3 e~~v~eaL~~V~DPe~~~dIv~LGlV~~i~i~~~~v~v~l~lt~~~cp~~~-~i~~~i~~al~~-l~gv~~V~V   74 (91)
T d2cu6a1           3 EAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPLHD-SLGEAVRQALSR-LPGVEEVEV   74 (91)
T ss_dssp             HHHHHHHHTTCEETTTTEETTTTTCEEEEEEETTEEEEEECCSSSSCCSSC-HHHHHHHHHHHT-STTCCEEEE
T ss_pred             HHHHHHHHhcCCCCCCCcChhhccceeEEEEeccccEEEEEcCCCCCcHHH-HHHHHHHHHHHc-CCCCceEEE
Confidence            7788888875 667655   3446688889999999999999999999764 577888888874 788777643

>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TM0487
species: Thermotoga maritima [TaxId: 2336]

Probab=92.40  E-value=0.16  Score=36.91  Aligned_cols=69  Identities=22%  Similarity=0.252  Sum_probs=51.4

Q ss_pred             chhhHHHHHHHH-hccceeccc--CCCcEEEEEEeC-CEEEEEecCCCCCch---hHHHHHHHHHHhhCCCcceEEe
Q 038446          160 ELNEENIEKVLA-EIRPYLAGT--GGGILELIQIDD-YVVRVRLSGPAAGVM---TVRVALTQKLREKIPSIAAVQL  229 (231)
Q Consensus       160 ~lt~e~V~~vL~-~IRP~L~~h--dGGdvElV~v~~-~vv~VrL~GaC~gC~---Tlk~~Ie~~Lr~~iPei~~V~~  229 (231)
                      +++++.|.++|. -+-|.+...  +=|=|.=+.|++ |.|+|.+.=.+.+|+   .++..|+++|+ ++|++..|.+
T Consensus         4 ~vt~~~V~~aL~~V~DPe~~~dIV~LGlV~~i~I~~~g~V~v~~~lt~~~Cp~~~~i~~~i~~al~-~~~gV~~v~V   79 (102)
T d1uwda_           4 KVTKEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGMILSDAEEAIK-KIEGVNNVEV   79 (102)
T ss_dssp             CCCHHHHHHHHTTCBCTTTSSBTTTTTCCCCEEECTTCEEEEEECCSSSCCSSHHHHHHHHHHHHH-TSSSCCEEEE
T ss_pred             ccCHHHHHHHHhCCCCCCCCcceeeccceeeEEeccccceEEEEecCCCCCchHHHHHHHHHHHHH-cCCCCceEEE
Confidence            356778888886 466765431  335566677876 799999998888885   78889999998 4899987764

>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TM0487
species: Thermotoga maritima [TaxId: 2336]

Probab=91.09  E-value=0.42  Score=34.58  Aligned_cols=72  Identities=22%  Similarity=0.192  Sum_probs=54.1

Q ss_pred             CCCcHHHHHHHHHH-hcCcccc---CCCeEEEEEEeC-cEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeeee
Q 038446           78 LPLTEENVERVLDE-VRPGLMA---DGGNVALHEIDG-LVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQ  151 (231)
Q Consensus        78 ~~lt~e~V~~vL~~-IRP~L~~---dGGdVeLv~Ve~-~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~~  151 (231)
                      ..+++++|..+|.. +-|.+..   +=|=|.=+.|++ +.|++.+.-.+.+||.. ..+...|+++|++ +|.+.+|..
T Consensus         3 ~~vt~~~V~~aL~~V~DPe~~~dIV~LGlV~~i~I~~~g~V~v~~~lt~~~Cp~~-~~i~~~i~~al~~-~~gV~~v~V   79 (102)
T d1uwda_           3 KKVTKEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLA-GMILSDAEEAIKK-IEGVNNVEV   79 (102)
T ss_dssp             SCCCHHHHHHHHTTCBCTTTSSBTTTTTCCCCEEECTTCEEEEEECCSSSCCSSH-HHHHHHHHHHHHT-SSSCCEEEE
T ss_pred             cccCHHHHHHHHhCCCCCCCCcceeeccceeeEEeccccceEEEEecCCCCCchH-HHHHHHHHHHHHc-CCCCceEEE
Confidence            35789999999975 6676642   234455567877 79999999999999974 5677888988884 788776543

>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

Probab=87.99  E-value=0.24  Score=32.92  Aligned_cols=55  Identities=22%  Similarity=0.479  Sum_probs=36.5

Q ss_pred             CcEEEEEEcc-CCCCCCCchHhHHHHHHHHHhhhcccceeeeeecccc------cccchhhHHHHHHHHh
Q 038446          110 GLVVVLKLQG-ACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTE------TGLELNEENIEKVLAE  172 (231)
Q Consensus       110 ~~~V~VrL~G-aC~gCpss~~TLk~~IE~~L~e~iPei~~V~~v~~~~------~~~~lt~e~V~~vL~~  172 (231)
                      ...+.++..| .|.+|..       .||++|++ +|.+.+|.......      +....+.+.|.+.|++
T Consensus         5 ~~~~~l~V~Gm~C~~C~~-------~Ie~~l~~-~~gV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~~   66 (72)
T d1p6ta1           5 QKEIAMQVSGMTCAACAA-------RIEKGLKR-MPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEK   66 (72)
T ss_dssp             CEEEEEEEESCCSSHHHH-------HHHHHHTT-SSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHHH
T ss_pred             ceEEEEEECCeecHHHHH-------HHHHHHHc-CCCcEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4577888888 8999987       89999986 68887775433221      1223445666666653

>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Mercuric ion binding protein MerP
species: Ralstonia metallidurans CH34 [TaxId: 266264]

Probab=85.73  E-value=0.46  Score=31.58  Aligned_cols=53  Identities=19%  Similarity=0.492  Sum_probs=35.4

Q ss_pred             EEEEEEcc-CCCCCCCchHhHHHHHHHHHhhhcccceeeeeecccc------cccchhhHHHHHHHHh
Q 038446          112 VVVLKLQG-ACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTE------TGLELNEENIEKVLAE  172 (231)
Q Consensus       112 ~V~VrL~G-aC~gCpss~~TLk~~IE~~L~e~iPei~~V~~v~~~~------~~~~lt~e~V~~vL~~  172 (231)
                      ++.++..| .|++|.+       .|++.|+. +|.+..+.......      +....+.+.|.+.|+.
T Consensus         4 t~~l~V~Gm~C~~C~~-------~Ie~~l~~-~~gV~~v~v~~~~~~~~v~~~~~~~~~~~i~~~i~~   63 (72)
T d1osda_           4 TVTLSVPGMTCSACPI-------TVKKAISK-VEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATAD   63 (72)
T ss_dssp             EEEEECTTCCSTTHHH-------HHHHHHHT-STTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHH
T ss_pred             EEEEEECCcccHHHHH-------HHHHHHHc-CCCcEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHh
Confidence            57778887 8999987       88988886 88887765432221      1123445667777653

>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.89  E-value=1.1  Score=30.54  Aligned_cols=54  Identities=24%  Similarity=0.509  Sum_probs=35.6

Q ss_pred             cEEEEEEcc-CCCCCCCchHhHHHHHHHHHhhhcccceeeeeecccc------cccchhhHHHHHHHHh
Q 038446          111 LVVVLKLQG-ACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTE------TGLELNEENIEKVLAE  172 (231)
Q Consensus       111 ~~V~VrL~G-aC~gCpss~~TLk~~IE~~L~e~iPei~~V~~v~~~~------~~~~lt~e~V~~vL~~  172 (231)
                      ..+.++..| .|.+|..       .||.+|.+ +|.+..|.......      +....+.+.|.++|+.
T Consensus         9 ~~v~l~V~GMtC~~C~~-------~Ie~~l~~-~~GV~~v~vn~~~~~v~v~~~~~~~~~~~i~~~I~~   69 (84)
T d1q8la_           9 VVLKMKVEGMTCHSCTS-------TIEGKIGK-LQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEA   69 (84)
T ss_dssp             EEEEEEECCTTTCSSCH-------HHHHHHHT-CTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHH
T ss_pred             EEEEEEECCeEcHHHHH-------HHHHHHhc-CCCceEEEEECCCCEEceeecccccCHHHHHHHHHH
Confidence            467788888 9999998       88988885 88887765422211      1122445677777763

>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper transporter domain ccc2a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.11  E-value=1  Score=29.71  Aligned_cols=53  Identities=26%  Similarity=0.580  Sum_probs=34.0

Q ss_pred             EEEEEEcc-CCCCCCCchHhHHHHHHHHHhhhcccceeeeeecccc----c-ccchhhHHHHHHHHh
Q 038446          112 VVVLKLQG-ACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTE----T-GLELNEENIEKVLAE  172 (231)
Q Consensus       112 ~V~VrL~G-aC~gCpss~~TLk~~IE~~L~e~iPei~~V~~v~~~~----~-~~~lt~e~V~~vL~~  172 (231)
                      .+.++..| .|.+|..       .||++|+. +|.+.+|.......    . ..+.+.+.|.+.|++
T Consensus         3 ~v~l~V~GM~C~~C~~-------~Ie~~l~~-~~gV~~v~V~~~~~~~~v~~~~~~~~~~i~~~i~~   61 (72)
T d2ggpb1           3 EVILAVHGMTCSACTN-------TINTQLRA-LKGVTKCDISLVTNECQVTYDNEVTADSIKEIIED   61 (72)
T ss_dssp             EEEEECTTCCSSTTTH-------HHHHHHTT-STTEEEEEECTTTCEEEEEECSSCCHHHHHHHHHH
T ss_pred             EEEEEECCcccHHHHH-------HHHHHHhc-CCCceEEEEECCCCEEEEEECCCCCHHHHHHHHHH
Confidence            46677777 8999998       88999986 67777665322111    0 112455667777754