Citrus Sinensis ID: 038455

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Protein Sequence
MNEMQGYKACLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVMCNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTKQ
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEccccccEEEEEccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEcccccEEEEEEcccccccccccccccccccHHHcccHHHHccEEccccccccccccccHHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccccc
Coil and Loop (DISEMBL)
MNEMQGYKACLETERTALLAIKSFFIsvsdvgyddkilpswvgeddgmpsdccdawegvmcnATTRRVMQLSLNYTRrlkyydrtsasfmnmslfhpfeelqsldlsenwftgiyenraydsfgslkQLKMLNLGfnyvndsilpylntLTSLTTLNlsynkiegsrtkq
Flexible Loop (DISEMBL)
MNEMQGYKACLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVMCNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSlttlnlsynkiegsrtkq
Low Complexity Region (SEG)
MNEMQGYKACLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVMCNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYlntltslttlnlsYNKIEGSRTKQ
Disordered region (IsUnstruct)
******YKACLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVMCNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYN*********
Disordered Region (DISOPRED)
***********ETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVMCNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT**
Disordered Region (DISEMBL)
MNEMQGYKACLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVMCNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTKQ
Disordered Region (DISPRO)
**EMQGYKACLETERTALLAIKSFFISVSD***DDKILPSWVGEDDGMPSDCCDAWEGVMCNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGS****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNEMQGYKACLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVMCNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTKQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	170	2.2.26 [Sep-21-2011]
Q0WR59	1048	Probable inactive recepto	no	no	0.847	0.137	0.296	3e-06
Q6R2K1	699	Protein STRUBBELIG-RECEPT	no	no	0.647	0.157	0.296	4e-06
Q9LP24	1120	Probable leucine-rich rep	no	no	0.829	0.125	0.301	7e-06
Q93Y06	669	Probable inactive recepto	no	no	0.835	0.212	0.297	1e-05
Q9LRT1	1016	Probably inactive leucine	no	no	0.7	0.117	0.335	2e-05
Q9S7I6	1151	LRR receptor-like serine/	no	no	0.376	0.055	0.426	2e-05
Q05091	330	Polygalacturonase inhibit	N/A	no	0.817	0.421	0.273	3e-05
Q9SH71	587	Putative inactive recepto	no	no	0.605	0.175	0.319	6e-05
Q9SGP2	996	Receptor-like protein kin	no	no	0.752	0.128	0.273	7e-05
Q6XAT2	967	LRR receptor-like serine/	no	no	0.829	0.145	0.277	0.0001

>sp|Q0WR59|Y5020_ARATH Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana GN=At5g10020 PE=1 SV=2

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 69/162 (42%), Gaps = 18/162 (11%)

Query: 5   QGYKACLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGM-PSDCCDAWEGVMCNA 63
            G  A  ETE  +LL    F   + D     +I  SW        PS C + W G+ C+ 
Sbjct: 17  HGANAVTETELRSLL---EFRKGIRDETSHQRI--SWSDTSSLTDPSTCPNDWPGISCDP 71

Query: 64  TTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSF 123
            T  ++ ++L+         R  +  +  S       L++L LS N F+G    R   S 
Sbjct: 72  ETGSIIAINLDR--------RGLSGELKFSTLSGLTRLRNLSLSGNSFSG----RVVPSL 119

Query: 124 GSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165
           G +  L+ L+L  N     I   ++ L SL  LNLS NK EG
Sbjct: 120 GGISSLQHLDLSDNGFYGPIPGRISELWSLNHLNLSSNKFEG 161

Arabidopsis thaliana (taxid: 3702)

>sp|Q6R2K1|SRF5_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 15/125 (12%)

Query: 52  CCDAWEGVMCNATTRRVMQLS-----------LNYTRRLKYYDRTSASFMNMSLFHPFEE 100
           C D+WEGV C  ++   +QLS           L+  + L  +D +  +      +     
Sbjct: 56  CEDSWEGVKCKGSSVTELQLSGFELGGSRGYLLSNLKSLTTFDLSKNNLKGNIPYQLPPN 115

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           + +LD SEN   G   N  Y S   +K L+ +NLG N +N  +      L+ L TL+ S 
Sbjct: 116 IANLDFSENELDG---NVPY-SLSQMKNLQSINLGQNKLNGELPDMFQKLSKLETLDFSL 171

Query: 161 NKIEG 165
           NK+ G
Sbjct: 172 NKLSG 176

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 28/169 (16%)

Query: 14  ERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVMCNATTRRVMQLSL 73
           E  ALL  KS F + S        L SWV + +   S  C +W GV CN+    + +L+L
Sbjct: 33  EANALLKWKSTFTNSSK-------LSSWVHDANTNTSFSCTSWYGVSCNSRGS-IEELNL 84

Query: 74  NYT------RRLKYYDRTSASFMNMSL----------FHPFEELQSLDLSENWFTGIYEN 117
             T      +   +   ++ +++++S+          F    +L   DLS N  TG    
Sbjct: 85  TNTGIEGTFQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTG---- 140

Query: 118 RAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGS 166
               S G+LK L +L L  NY+   I   L  + S+T L LS NK+ GS
Sbjct: 141 EISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGS 189

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q93Y06|Y5720_ARATH Probable inactive receptor kinase At5g67200 OS=Arabidopsis thaliana GN=At5g67200 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 82/175 (46%), Gaps = 33/175 (18%)

Query: 7   YKACLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVMCNATTR 66
           + + L ++  ALL+ KS     +D+  D+K+L S          D C  W GV C     
Sbjct: 27  FNSLLPSDAVALLSFKS----TADL--DNKLLYSLTER-----YDYCQ-WRGVKC--AQG 72

Query: 67  RVMQLSLNYTRRLKYYDRTSASFM---------NMSLFHPFEEL------QSLDLSENWF 111
           R+++L L+      Y+   + S +         N SLF P  +L      +SL LS N F
Sbjct: 73  RIVRLVLSGVGLRGYFSSATLSRLDQLRVLSLENNSLFGPIPDLSHLVNLKSLFLSRNQF 132

Query: 112 TGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGS 166
           +G +      S  SL +L +L++  N  + SI   +N L  LT+LNL +N+  G+
Sbjct: 133 SGAFP----PSILSLHRLMILSISHNNFSGSIPSEINALDRLTSLNLDFNRFNGT 183

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 70/143 (48%), Gaps = 24/143 (16%)

Query: 38  LPSWVGEDDGMPSDCCDAWEGVMCNATTRRVMQLSLN-------------YTRRLKYYDR 84
           L SW  EDD  P   C +W  V CN  T RV++LSL+               +RLK    
Sbjct: 54  LESWT-EDDNTP---C-SWSYVKCNPKTSRVIELSLDGLALTGKINRGIQKLQRLKVLSL 108

Query: 85  TSASFM-NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSI 143
           ++ +F  N++       LQ LDLS N  +G    +   S GS+  L+ L+L  N  + ++
Sbjct: 109 SNNNFTGNINALSNNNHLQKLDLSHNNLSG----QIPSSLGSITSLQHLDLTGNSFSGTL 164

Query: 144 LPYL-NTLTSLTTLNLSYNKIEG 165
              L N  +SL  L+LS+N +EG
Sbjct: 165 SDDLFNNCSSLRYLSLSHNHLEG 187

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7I6|RPK2_ARATH LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana GN=RPK2 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 99  EELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNL 158
           E+L+ LDL  N  TG       D F  L+ L+++NLGFN V+  I   L  LT L  LNL
Sbjct: 168 EKLEVLDLEGNLMTGSLP----DQFTGLRNLRVMNLGFNRVSGEIPNSLQNLTKLEILNL 223

Query: 159 SYNKIEGS 166
             NK+ G+
Sbjct: 224 GGNKLNGT 231

Key regulator of anther development (e.g. lignification pattern), including tapetum degradation during pollen maturation (e.g. germination capacity). Together with RPK1, required for pattern formation along the radial axis (e.g. the apical embryonic domain cell types that generate cotyledon primordia), and the apical-basal axis (e.g. differentiation of the basal pole during early embryogenesis).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q05091|PGIP_PYRCO Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1

 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 33/172 (19%)

Query: 10  CLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVMCNATTRRVM 69
           C   ++  LL IK  F        D  +L SW  +     +DCCD W  V C++TT R+ 
Sbjct: 27  CNPDDKKVLLQIKKAF-------GDPYVLASWKSD-----TDCCD-WYCVTCDSTTNRIN 73

Query: 70  QLS----------------LNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTG 113
            L+                L Y   L+++ + + +          + L+SL LS    +G
Sbjct: 74  SLTIFAGQVSGQIPALVGDLPYLETLEFHKQPNLTGPIQPAIAKLKGLKSLRLSWTNLSG 133

Query: 114 IYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165
                  D    LK L  L+L FN +  +I   L+ L +L  L L  NK+ G
Sbjct: 134 ----SVPDFLSQLKNLTFLDLSFNNLTGAIPSSLSELPNLGALRLDRNKLTG 181

Inhibitor of fungal polygalacturonase. It is an important factor for plant resistance to phytopathogenic fungi.

Pyrus communis (taxid: 23211)

>sp|Q9SH71|Y1421_ARATH Putative inactive receptor-like protein kinase At1g64210 OS=Arabidopsis thaliana GN=At1g64210 PE=3 SV=1

 Score = 47.0 bits (110), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 57/141 (40%), Gaps = 38/141 (26%)

Query: 50  SDCCDAWEGVMCNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPF-----EELQSL 104
           SD C +W GV CN    R++ +            R  A   N  L  PF       L+ L
Sbjct: 47  SDVCHSWTGVTCNENGDRIVSV------------RLPAVGFN-GLIPPFTISRLSSLKFL 93

Query: 105 DLSENWFTG--------------IYENRAYDS------FGSLKQLKMLNLGFNYVNDSIL 144
            L +N FTG              +Y    + S      F  LK LK+L+L  N  N SI 
Sbjct: 94  SLRKNHFTGDFPSDFTNLKSLTHLYLQHNHLSGPLLAIFSELKNLKVLDLSNNGFNGSIP 153

Query: 145 PYLNTLTSLTTLNLSYNKIEG 165
             L+ LTSL  LNL+ N   G
Sbjct: 154 TSLSGLTSLQVLNLANNSFSG 174

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SGP2|HSL1_ARATH Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 67/168 (39%), Gaps = 40/168 (23%)

Query: 35  DKILPSWVGEDDGMPSDCCDAWEGVMCNATTRRVMQLSLNYTRRLKYYDRTSASFMNM-- 92
           D  L SW   D    S C   W GV C      V  + L+       +        N+  
Sbjct: 34  DSYLSSWNSND---ASPC--RWSGVSCAGDFSSVTSVDLSSANLAGPFPSVICRLSNLAH 88

Query: 93  -SLFH-------PF-----EELQSLDLSENWFTGIYENRAYD------------------ 121
            SL++       P      + LQ+LDLS+N  TG       D                  
Sbjct: 89  LSLYNNSINSTLPLNIAACKSLQTLDLSQNLLTGELPQTLADIPTLVHLDLTGNNFSGDI 148

Query: 122 --SFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSR 167
             SFG  + L++L+L +N ++ +I P+L  +++L  LNLSYN    SR
Sbjct: 149 PASFGKFENLEVLSLVYNLLDGTIPPFLGNISTLKMLNLSYNPFSPSR 196

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 75/180 (41%), Gaps = 39/180 (21%)

Query: 6   GYKACLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVMCNATT 65
           G  + +  E  AL+AIK+ F +V+++  D      W   DD    D C +W GV C+  +
Sbjct: 23  GSVSPMNNEGKALMAIKASFSNVANMLLD------W---DDVHNHDFC-SWRGVFCDNVS 72

Query: 66  RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENR------- 118
             V+ L+L+               MN         LQS+DL  N   G   +        
Sbjct: 73  LNVVSLNLSNLNLGGEISSALGDLMN---------LQSIDLQGNKLGGQIPDEIGNCVSL 123

Query: 119 AYDSFGS-------------LKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165
           AY  F +             LKQL+ LNL  N +   I   L  + +L TL+L+ N++ G
Sbjct: 124 AYVDFSTNLLFGDIPFSISKLKQLEFLNLKNNQLTGPIPATLTQIPNLKTLDLARNQLTG 183

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
297745031	869	unnamed protein product [Vitis vinifera]	0.929	0.181	0.485	2e-35
225465991	1031	PREDICTED: LRR receptor-like serine/thre	0.847	0.139	0.477	1e-29
359482735	1097	PREDICTED: receptor-like protein 12-like	0.923	0.143	0.426	1e-25
240256417	908	receptor like protein 56 [Arabidopsis th	0.911	0.170	0.421	1e-25
10177158	888	disease resistance protein-like [Arabido	0.911	0.174	0.421	1e-25
297821945	910	leucine-rich repeat family protein [Arab	0.911	0.170	0.402	1e-25
240254535	935	receptor like protein 21 [Arabidopsis th	0.911	0.165	0.402	2e-25
4432858	910	putative disease resistance protein [Ara	0.911	0.170	0.402	2e-25
359482749	1067	PREDICTED: leucine-rich repeat receptor	0.952	0.151	0.419	5e-25
359483099	1231	PREDICTED: probable LRR receptor-like se	0.952	0.131	0.403	2e-24

>gi|297745031|emb|CBI38623.3| unnamed protein product [Vitis vinifera]

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/171 (48%), Positives = 110/171 (64%), Gaps = 13/171 (7%)

Query: 3   EMQGYKACLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVMCN 62
           ++ GYK CLE ER  LL  K F  S ++    D++LPSWV +++   SDCC  WE V+CN
Sbjct: 18  QIHGYKCCLEKERMGLLEFKRFLRSNNEDA--DRLLPSWVNDEE---SDCC-YWERVVCN 71

Query: 63  ATTRRVMQLSLNYTRRLKYYDRT-------SASFMNMSLFHPFEELQSLDLSENWFTGIY 115
           +TT  V QLSLN  R++++Y R           F+N+SLFHPFEEL SLDLSENWF    
Sbjct: 72  STTGTVTQLSLNNIRQIEFYHRVYGLAPPKKTWFLNVSLFHPFEELVSLDLSENWFADSL 131

Query: 116 ENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGS 166
           E++ ++    LK+L+MLN+G NY N+SI P +  LTSL  L L   K+EGS
Sbjct: 132 EDQGFEKLKGLKKLEMLNIGQNYFNNSIFPSVGALTSLRVLILRETKLEGS 182

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465991|ref|XP_002264576.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/157 (47%), Positives = 100/157 (63%), Gaps = 13/157 (8%)

Query: 17  ALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVMCNATTRRVMQLSLNYT 76
            LL  K F  S ++    D++LPSWV +++   SDCC  WE V+CN+TT  V QLSLN  
Sbjct: 2   GLLEFKRFLRSNNEDA--DRLLPSWVNDEE---SDCC-YWERVVCNSTTGTVTQLSLNNI 55

Query: 77  RRLKYYDRT-------SASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQL 129
           R++++Y R           F+N+SLFHPFEEL SLDLSENWF    E++ ++    LK+L
Sbjct: 56  RQIEFYHRVYGLAPPKKTWFLNVSLFHPFEELVSLDLSENWFADSLEDQGFEKLKGLKKL 115

Query: 130 KMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGS 166
           +MLN+G NY N+SI P +  LTSL  L L   K+EGS
Sbjct: 116 EMLNIGQNYFNNSIFPSVGALTSLRVLILRETKLEGS 152

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482735|ref|XP_003632821.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/171 (42%), Positives = 103/171 (60%), Gaps = 14/171 (8%)

Query: 8   KACLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVMCNATTRR 67
           K C+E E+  LL  K+F + ++D  + D +LPSW+   D   S+CC+ WE V+CN TT +
Sbjct: 24  KGCIEEEKMGLLEFKAF-LKLND-EHADFLLPSWL---DNNTSECCN-WERVICNPTTGQ 77

Query: 68  VMQLSLNYTRRLK--------YYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRA 119
           V +L LN  R+ +        YY+      +N+SLF PFEEL  L+LS N F G  EN  
Sbjct: 78  VKKLFLNDIRQQQNFLEDNWYYYENAKFWLLNVSLFLPFEELHHLNLSANSFDGFIENEG 137

Query: 120 YDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTKQ 170
           + S   LK+L++LNLG+N+ N +I+  L+ LTSL TL +S N IEG    Q
Sbjct: 138 FKSLSKLKKLEILNLGYNWFNKTIIKQLSGLTSLKTLVVSNNYIEGLFPSQ 188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256417|ref|NP_199740.4| receptor like protein 56 [Arabidopsis thaliana] gi|332008410|gb|AED95793.1| receptor like protein 56 [Arabidopsis thaliana]

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/166 (42%), Positives = 99/166 (59%), Gaps = 11/166 (6%)

Query: 1   MNEMQGYKACLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVM 60
           +  + G+ +C+E ER ALL +K F +S  +    D +LP+W  +     SDCC  WE + 
Sbjct: 4   LGHLHGFSSCIEKERKALLELKKFVMSRCEECEYDSVLPTWTNDTK---SDCCQ-WENIK 59

Query: 61  CNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYEN-RA 119
           CN T+RR+  LSL YT    YY     S +N+SL HPFEE++SLDLS +   G+ ++   
Sbjct: 60  CNRTSRRLTGLSL-YT---SYY--LEISLLNLSLLHPFEEVRSLDLSNSRLNGLVDDVEG 113

Query: 120 YDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165
           Y S   L+ L++LN   N  N+SI P+LN  TSLTTL+L  N + G
Sbjct: 114 YKSLRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYG 159

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177158|dbj|BAB10347.1| disease resistance protein-like [Arabidopsis thaliana]

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/166 (42%), Positives = 99/166 (59%), Gaps = 11/166 (6%)

Query: 1   MNEMQGYKACLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVM 60
           +  + G+ +C+E ER ALL +K F +S  +    D +LP+W  +     SDCC  WE + 
Sbjct: 4   LGHLHGFSSCIEKERKALLELKKFVMSRCEECEYDSVLPTWTNDTK---SDCCQ-WENIK 59

Query: 61  CNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYEN-RA 119
           CN T+RR+  LSL YT    YY     S +N+SL HPFEE++SLDLS +   G+ ++   
Sbjct: 60  CNRTSRRLTGLSL-YT---SYY--LEISLLNLSLLHPFEEVRSLDLSNSRLNGLVDDVEG 113

Query: 120 YDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165
           Y S   L+ L++LN   N  N+SI P+LN  TSLTTL+L  N + G
Sbjct: 114 YKSLRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYG 159

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821945|ref|XP_002878855.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297324694|gb|EFH55114.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 104/169 (61%), Gaps = 14/169 (8%)

Query: 1   MNEMQGYKACLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVM 60
           + ++ G K C+  ER ALL +K + +S S     D +LP+W  +     SDCC  W+G+ 
Sbjct: 4   LGQLHGCKGCIMKEREALLELKKYLMSRSRESGLDYVLPTWTNDTK---SDCCQ-WDGIK 59

Query: 61  CNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSE---NWFTGIYEN 117
           CN T+RRV+ LS+       Y+  +S   +N+SL HPFEE++SL+LS    N F G +++
Sbjct: 60  CNRTSRRVIGLSVGDM----YFKESSP--LNLSLLHPFEEVRSLNLSTEGYNEFNGFFDD 113

Query: 118 -RAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165
              Y S   L+ L++++L  NY N SI P+LN  TSLTT+ L+YN+++G
Sbjct: 114 VEGYRSLSRLRNLQIMDLSTNYFNYSIFPFLNAATSLTTIFLTYNEMDG 162

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240254535|ref|NP_180117.4| receptor like protein 21 [Arabidopsis thaliana] gi|330252611|gb|AEC07705.1| receptor like protein 21 [Arabidopsis thaliana]

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 104/169 (61%), Gaps = 14/169 (8%)

Query: 1   MNEMQGYKACLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVM 60
           + ++ G  +C+E ER ALL +K + +S S     D +LP+W  +     SDCC  W+G+ 
Sbjct: 4   LGQLHGCTSCIEKEREALLELKKYLMSRSRESGLDYVLPTWTNDTK---SDCCQ-WDGIK 59

Query: 61  CNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSE---NWFTGIYEN 117
           CN T+ RV++LS+       Y+  +S   +N+SL HPFEE++SL+LS    N F G +++
Sbjct: 60  CNRTSGRVIELSVGDM----YFKESSP--LNLSLLHPFEEVRSLNLSTEGYNEFNGFFDD 113

Query: 118 -RAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165
              Y S   L+ LK+++L  NY N S  P+LN  TSLTTL L+YN+++G
Sbjct: 114 VEGYRSLSGLRNLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDG 162

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4432858|gb|AAD20706.1| putative disease resistance protein [Arabidopsis thaliana]

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 104/169 (61%), Gaps = 14/169 (8%)

Query: 1   MNEMQGYKACLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVM 60
           + ++ G  +C+E ER ALL +K + +S S     D +LP+W  +     SDCC  W+G+ 
Sbjct: 4   LGQLHGCTSCIEKEREALLELKKYLMSRSRESGLDYVLPTWTNDTK---SDCCQ-WDGIK 59

Query: 61  CNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSE---NWFTGIYEN 117
           CN T+ RV++LS+       Y+  +S   +N+SL HPFEE++SL+LS    N F G +++
Sbjct: 60  CNRTSGRVIELSVGDM----YFKESSP--LNLSLLHPFEEVRSLNLSTEGYNEFNGFFDD 113

Query: 118 -RAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165
              Y S   L+ LK+++L  NY N S  P+LN  TSLTTL L+YN+++G
Sbjct: 114 VEGYRSLSGLRNLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDG 162

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482749|ref|XP_002262614.2| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/174 (41%), Positives = 99/174 (56%), Gaps = 12/174 (6%)

Query: 3   EMQGYKACLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVMCN 62
           ++ G K C+E E+  LL  K+F    ++  + D +LPSW+   D   S+CC+ WE V+CN
Sbjct: 19  QICGCKGCIEEEKMGLLEFKAFLKLNNE--HADFLLPSWI---DNNTSECCN-WERVICN 72

Query: 63  ATTRRVMQLSLNYTRRLK------YYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYE 116
            TT RV +L  N   R        YY+      +N+SLF PFEEL  L+LS N F G  E
Sbjct: 73  PTTGRVKKLFFNDITRQHLEDNWYYYENVKFWLLNVSLFLPFEELHHLNLSANSFDGFIE 132

Query: 117 NRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTKQ 170
           N  + S   LK+L++LNL  N  N +I+  L+ LTSL TL +SYN IEG    Q
Sbjct: 133 NEGFKSLSKLKKLEILNLRDNQFNKTIIKQLSGLTSLKTLVVSYNYIEGLFPSQ 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483099|ref|XP_002262931.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/176 (40%), Positives = 102/176 (57%), Gaps = 14/176 (7%)

Query: 3   EMQGYKACLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVMCN 62
           ++ G K C+E E+  LL  K+F + ++D G+ D +LPSW+   D   SDCC+ WE V+CN
Sbjct: 19  QICGCKGCIEEEKMGLLEFKAF-LKLND-GHADFLLPSWI---DNNISDCCN-WERVICN 72

Query: 63  ATTRRVMQLSLNYTRRLK--------YYDRTSASFMNMSLFHPFEELQSLDLSENWFTGI 114
            TT RV +LSLN  R+ +        YY+      +N+SLF PFEEL  L+LS N F G 
Sbjct: 73  PTTGRVKKLSLNDIRQQQNMLEVNWYYYENVKFWLLNVSLFLPFEELHHLNLSANSFDGF 132

Query: 115 YENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTKQ 170
            EN  +    SLK+L++L++  N  + S L  L  +TSL TL +    ++GS   Q
Sbjct: 133 IENEGFKGLSSLKKLEILDISGNEFDKSALKSLGAITSLKTLAIRSMGLDGSFPIQ 188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.894	0.155	0.380	4.6e-23
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.911	0.170	0.367	8.6e-23
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.911	0.165	0.349	3.1e-22
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.9	0.158	0.317	3.2e-19
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.829	0.130	0.324	1.7e-13
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.558	0.106	0.392	2.5e-12
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.588	0.1	0.274	1.7e-06
TAIR|locus:2119445	719	AT4G13820 [Arabidopsis thalian	0.647	0.152	0.328	2.4e-06
TAIR|locus:2119535	725	RLP48 "receptor like protein 4	0.629	0.147	0.341	3.9e-06
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.623	0.104	0.358	4.6e-06

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 4.6e-23, P = 4.6e-23
 Identities = 64/168 (38%), Positives = 97/168 (57%)

Query:     3 EMQGYKACLETERTALLAIKSFFIS-VSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVMC 61
             +++GYK C+E ER ALL +K + IS  +D G D  +LP+W  +     S+CC  WEG+ C
Sbjct:    20 QLRGYKCCIEKERKALLELKKYMISKTADWGLDS-VLPTWTNDTK---SNCC-RWEGLKC 74

Query:    62 NATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSE---NWFTGIYEN- 117
             N T+ R+++LS+  T   K      +S +N+SL HPFEEL+SL+LS    N F G++++ 
Sbjct:    75 NQTSGRIIELSIGQTN-FK-----ESSLLNLSLLHPFEELRSLNLSGEIYNEFNGLFDDV 128

Query:   118 RAYDSFGSLKQLKMLNLGFNYVNDSILPYXXXXXXXXXXXXXYNKIEG 165
               Y+S   L+ L++L+L  N  N+SI P+              N I G
Sbjct:   129 EGYESLRRLRNLEILDLSSNSFNNSIFPFLNAATSLTTLFIQSNYIGG 176

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 8.6e-23, P = 8.6e-23
 Identities = 61/166 (36%), Positives = 89/166 (53%)

Query:     1 MNEMQGYKACLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVM 60
             +  + G+ +C+E ER ALL +K F +S  +    D +LP+W  +     SDCC  WE + 
Sbjct:     4 LGHLHGFSSCIEKERKALLELKKFVMSRCEECEYDSVLPTWTNDTK---SDCCQ-WENIK 59

Query:    61 CNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYEN-RA 119
             CN T+RR+  LSL YT    YY     S +N+SL HPFEE++SLDLS +   G+ ++   
Sbjct:    60 CNRTSRRLTGLSL-YT---SYY--LEISLLNLSLLHPFEEVRSLDLSNSRLNGLVDDVEG 113

Query:   120 YDSFGSLKQLKMLNLGFNYVNDSILPYXXXXXXXXXXXXXYNKIEG 165
             Y S   L+ L++LN   N  N+SI P+              N + G
Sbjct:   114 YKSLRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYG 159

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 3.1e-22, P = 3.1e-22
 Identities = 59/169 (34%), Positives = 94/169 (55%)

Query:     1 MNEMQGYKACLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVM 60
             + ++ G  +C+E ER ALL +K + +S S     D +LP+W  +     SDCC  W+G+ 
Sbjct:     4 LGQLHGCTSCIEKEREALLELKKYLMSRSRESGLDYVLPTWTNDTK---SDCCQ-WDGIK 59

Query:    61 CNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSE---NWFTGIYEN 117
             CN T+ RV++LS+       Y+  +S   +N+SL HPFEE++SL+LS    N F G +++
Sbjct:    60 CNRTSGRVIELSVGDM----YFKESSP--LNLSLLHPFEEVRSLNLSTEGYNEFNGFFDD 113

Query:   118 -RAYDSFGSLKQLKMLNLGFNYVNDSILPYXXXXXXXXXXXXXYNKIEG 165
                Y S   L+ LK+++L  NY N S  P+             YN+++G
Sbjct:   114 VEGYRSLSGLRNLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDG 162

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 3.2e-19, P = 3.2e-19
 Identities = 53/167 (31%), Positives = 92/167 (55%)

Query:     1 MNEMQGYKACLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVM 60
             M ++ GYK+C++ E+ AL  ++   IS ++    + +LP+W  +     SDCC  W+GV 
Sbjct:    18 MGQLHGYKSCIDEEKIALFELRKHMISRTE---SESVLPTWTNDTT---SDCC-RWKGVA 70

Query:    61 CNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYEN-RA 119
             CN  + RV ++S      L   D    S +N+SL HPFE+++SL+LS +  +G++++   
Sbjct:    71 CNRVSGRVTEISFG---GLSLKDN---SLLNLSLLHPFEDVRSLNLSSSRCSGLFDDVEG 124

Query:   120 YDSFGSLKQLKMLNLGFNYVNDSILPYXXXXXXXXXXXXXYNKIEGS 166
             Y S   L++L++L+L  N  N+SI  +              N ++GS
Sbjct:   125 YKSLRKLRKLEILDLASNKFNNSIFHFLSAATSLTTLFLRSNNMDGS 171

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 1.7e-13, P = 1.7e-13
 Identities = 50/154 (32%), Positives = 81/154 (52%)

Query:    18 LLAIKSFFISVSDVGYDDK----ILPSWVGEDDGMPSDCCDAWEGVMCN-ATTRRVMQLS 72
             LL +KS+  ++ D   +++    IL SW   +     DCC  WE V C+ A    V+ LS
Sbjct:     3 LLQLKSYLKNLVDAEEEEEEGLSILKSWTHHE----GDCC-RWERVKCSDAINGHVIGLS 57

Query:    73 LNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYEN-RAYDSFGSLKQLKM 131
             L+    + +  +T +  +N+SL H F +LQSL+LS NWFT + ++   + SFG+L +L  
Sbjct:    58 LDRLVPVAFESQTRS--LNLSLLHSFPQLQSLNLSWNWFTNLSDHFLGFKSFGTLDKLTT 115

Query:   132 LNLGFNYVNDSILPYXXXXXXXXXXXXXYNKIEG 165
             L+   N  ++SI+P+              N +EG
Sbjct:   116 LDFSHNMFDNSIVPFLNAATSIRSLHLESNYMEG 149

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 2.5e-12, P = 2.5e-12
 Identities = 40/102 (39%), Positives = 63/102 (61%)

Query:    48 MPSD--CCDAWEGVMCNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLD 105
             M SD  CC  W  + C+ T++RV+ +SL+    ++  D      +N++ F+PFEELQSL+
Sbjct:     1 MSSDRSCCH-WRRIKCDITSKRVIGISLSL-ESIRPPDPLPQ--LNLTFFYPFEELQSLN 56

Query:   106 LSENWFTGIYENR-AYDSFGSLKQLKMLNLGFNYVNDSILPY 146
             LS  +F G ++ R      GSL+ L+ L+LG N+ + S+LPY
Sbjct:    57 LSSGYFKGWFDERKGGKGLGSLRNLETLDLGVNFYDTSVLPY 98

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 31/113 (27%), Positives = 56/113 (49%)

Query:    58 GVMCNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSEN------WF 111
             GV CN  + R+  ++      ++         +N+SL HPFE+++SLDLS +       F
Sbjct:     2 GVECNRKSGRITNIAFGIGFIIEN------PLLNLSLLHPFEDVRSLDLSSSRSCEDCGF 55

Query:   112 TGIYEN-RAYDSFGSLKQLKMLNLGFNYVNDSILPYXXXXXXXXXXXXXYNKI 163
             +G++++   Y S   L+ L++L+L  +  N+SI P+             YN +
Sbjct:    56 SGLFDDVEGYKSLSRLRNLEILDLSSHRFNNSIFPFLNAATSLTTLFLTYNNM 108

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119445 AT4G13820 [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 2.4e-06, P = 2.4e-06
 Identities = 42/128 (32%), Positives = 65/128 (50%)

Query:    10 CLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVMCNATTRRVM 69
             C + ++ ALL  K+ F  V +    + I+     E     +DCC +W+G+ C+  T +V+
Sbjct:    29 CRQDQKNALLEFKNEFY-VHEFN-SNGIVGVKKTEKWRNNTDCC-SWDGISCDPKTGKVV 85

Query:    70 QLSL--NYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLK 127
             +L L  ++      YD         SLF   + L +LDL  N F+GI      DS GSLK
Sbjct:    86 ELDLMNSFLNGPLRYDS--------SLFR-LQHLHNLDLGSNNFSGILP----DSIGSLK 132

Query:   128 QLKMLNLG 135
              L++L+LG
Sbjct:   133 YLRVLSLG 140

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000303 "response to superoxide" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

TAIR|locus:2119535 RLP48 "receptor like protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 3.9e-06, P = 3.9e-06
 Identities = 43/126 (34%), Positives = 64/126 (50%)

Query:    10 CLETERTALLAIKS-FFISVSDVGYD-DKILPSWVGEDDGMPSDCCDAWEGVMCNATTRR 67
             CL  +R ALL  K+ F++   D     +K   +W  +     +DCC +W  V C+  T +
Sbjct:    34 CLPDQRDALLEFKNEFYVQEFDPHMKCEKATETWRNK-----TDCC-SWNRVSCDPKTGK 87

Query:    68 VMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLK 127
             V++L L  +  L    R+     N SLF   + LQSL+LS N  +GI      DS G+LK
Sbjct:    88 VVELDL-MSSCLNGPLRS-----NSSLFR-LQHLQSLELSSNNISGILP----DSIGNLK 136

Query:   128 QLKMLN 133
              L+ L+
Sbjct:   137 YLRSLS 142

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 4.6e-06, P = 4.6e-06
 Identities = 48/134 (35%), Positives = 63/134 (47%)

Query:    12 ETERTALLAIKSFFISVSDVGYDDK--ILPSWVGEDDGMPSDCCDAWEGVMCNATTRRVM 69
             ET+R ALL  KS    VS+    DK  +L SW   +   P   C+ W+GV C    +RV 
Sbjct:    23 ETDRQALLQFKS---QVSE----DKRVVLSSW---NHSFP--LCN-WKGVTCGRKNKRVT 69

Query:    70 QLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQL 129
              L L    RL+     S S  N+S       L SLDL EN+F G          G L +L
Sbjct:    70 HLELG---RLQLGGVISPSIGNLSF------LVSLDLYENFFGGTIPQEV----GQLSRL 116

Query:   130 KMLNLGFNYVNDSI 143
             + L++G NY+   I
Sbjct:   117 EYLDMGINYLRGPI 130

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00030803001 SubName- Full=Chromosome undetermined scaffold_52, whole genome shotgun sequence; (268 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	170
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-06
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	2e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-05
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	8e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.004

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.9 bits (102), Expect = 2e-06
 Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 6/64 (9%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY-LNTLTSLTTLNLS 159
           L+SLDLS N  T I +     +F  L  LK+L+L  N +  SI P   + L SL +L+LS
Sbjct: 2   LKSLDLSNNRLTVIPD----GAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLS 56

Query: 160 YNKI 163
            N +
Sbjct: 57  GNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLN 157
              LQS++LS N   G        S GS+  L++L+L +N  N SI   L  LTSL  LN
Sbjct: 441 LRHLQSINLSGNSIRGNIP----PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496

Query: 158 LSYNKIEG 165
           L+ N + G
Sbjct: 497 LNGNSLSG 504

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.6 bits (108), Expect = 4e-06
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L++LDLS N  +G       +  GS   LK+L+LG N +   I   L  LTSL  L L+ 
Sbjct: 142 LETLDLSNNMLSG----EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197

Query: 161 NKIEG 165
           N++ G
Sbjct: 198 NQLVG 202

Length = 968

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 39.4 bits (93), Expect = 2e-05
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 127 KQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164
             L+ L+L  N + D  LP L+ L +L TL+LS NKI 
Sbjct: 1   TNLETLDLSNNQITD--LPPLSNLPNLETLDLSGNKIT 36

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 4/67 (5%)

Query: 99  EELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNL 158
           + L++LDLS N F+G    +     GSL +L  L L  N ++  I   L++   L +L+L
Sbjct: 475 KRLENLDLSRNQFSGAVPRK----LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530

Query: 159 SYNKIEG 165
           S+N++ G
Sbjct: 531 SHNQLSG 537

Length = 968

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 38.1 bits (89), Expect = 8e-05
 Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 10/52 (19%)

Query: 11 LETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVMCN 62
          L  +R ALLA KS              L SW        SD C  W GV C+
Sbjct: 1  LNDDRDALLAFKSSLNGDP-----SGALSSWNPSS----SDPCS-WTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 121 DSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGS 166
           +    L+ L+ +NL  N +  +I P L ++TSL  L+LSYN   GS
Sbjct: 436 NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 99  EELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNL 158
           ++L SLDLS N  +G    +   SF  +  L  L+L  N ++  I   L  + SL  +N+
Sbjct: 523 KKLVSLDLSHNQLSG----QIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNI 578

Query: 159 SYNKIEGS 166
           S+N + GS
Sbjct: 579 SHNHLHGS 586

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)

Query: 100 ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLS 159
            LQ L L+ N F G       DSFGS K+L+ L+L  N  + ++   L +L+ L  L LS
Sbjct: 453 SLQMLSLARNKFFG----GLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLS 507

Query: 160 YNKIEG 165
            NK+ G
Sbjct: 508 ENKLSG 513

Length = 968

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 33.2 bits (77), Expect = 0.004
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 6/41 (14%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND 141
           L++LDLS N  T +          +L  L+ L+L  N + D
Sbjct: 3   LETLDLSNNQITDL------PPLSNLPNLETLDLSGNKITD 37

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	170
PLN03150	623	hypothetical protein; Provisional	99.76
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.73
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.15
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.14
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.89
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.87
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.84
PLN03150	623	hypothetical protein; Provisional	98.79
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.66
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.61
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.59
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.53
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.53
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.52
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.46
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.4
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.27
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.23
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.18
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.18
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.17
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.11
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.07
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.0
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.98
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.87
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.84
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.77
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.77
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.72
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.65
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.59
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.55
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.5
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.46
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.45
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.45
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.26
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.24
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.17
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.17
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.01
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.89
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.52
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.41
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.41
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.32
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.16
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.08
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.02
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.83
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.81
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	95.66
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.48
smart00370	26	LRR Leucine-rich repeats, outliers.	95.48
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.26
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	94.94
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	94.81
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.31
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	93.29
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.24
smart00370	26	LRR Leucine-rich repeats, outliers.	93.24
KOG2982	418	consensus Uncharacterized conserved protein [Funct	92.79
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.56
KOG2123	388	consensus Uncharacterized conserved protein [Funct	92.07
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	92.07
PRK15386	426	type III secretion protein GogB; Provisional	91.19
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	90.99
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	89.19
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	89.03
PRK15386	426	type III secretion protein GogB; Provisional	88.88
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	88.17
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	87.29
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	86.01
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	82.42
KOG3864	221	consensus Uncharacterized conserved protein [Funct	80.72

>PLN03150 hypothetical protein; Provisional

Probab=99.76  E-value=6e-18  Score=144.50  Aligned_cols=138  Identities=30%  Similarity=0.371  Sum_probs=112.1

Q ss_pred             cCCcHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEecCC--C--CCeEEeecCCcCccceec
Q 038455            8 KACLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVMCNAT--T--RRVMQLSLNYTRRLKYYD   83 (170)
Q Consensus         8 ~~~~~~~~~aL~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~~~c~~w~gv~c~~~--~--~~v~~L~L~~~~~l~~~~   83 (170)
                      ..+.+.|..||+.+|..+..+.        ..+|.+ +.+ ....|. |.||.|...  .  ..|+.|+|+++. +.+. 
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~--------~~~W~g-~~C-~p~~~~-w~Gv~C~~~~~~~~~~v~~L~L~~n~-L~g~-  433 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPL--------RFGWNG-DPC-VPQQHP-WSGADCQFDSTKGKWFIDGLGLDNQG-LRGF-  433 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCcc--------cCCCCC-CCC-CCcccc-cccceeeccCCCCceEEEEEECCCCC-cccc-
Confidence            3466789999999999985443        247976 100 001126 999999521  1  258899999887 5443 


Q ss_pred             CCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcC
Q 038455           84 RTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKI  163 (170)
Q Consensus        84 ~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l  163 (170)
                             .+..+..|++|+.|+|++|.+.|.+|.    .++.+++|+.|+|++|+++|.+|+.++.+++|+.|+|++|++
T Consensus       434 -------ip~~i~~L~~L~~L~Ls~N~l~g~iP~----~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l  502 (623)
T PLN03150        434 -------IPNDISKLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL  502 (623)
T ss_pred             -------CCHHHhCCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc
Confidence                   355688999999999999999999998    899999999999999999999999999999999999999999


Q ss_pred             cccCCC
Q 038455          164 EGSRTK  169 (170)
Q Consensus       164 ~g~iP~  169 (170)
                      +|.+|.
T Consensus       503 ~g~iP~  508 (623)
T PLN03150        503 SGRVPA  508 (623)
T ss_pred             cccCCh
Confidence            999996

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.73  E-value=2.8e-17  Score=146.39  Aligned_cols=141  Identities=32%  Similarity=0.477  Sum_probs=84.5

Q ss_pred             cHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEecCCCCCeEEeecCCcC-------------
Q 038455           11 LETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVMCNATTRRVMQLSLNYTR-------------   77 (170)
Q Consensus        11 ~~~~~~aL~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~~~c~~w~gv~c~~~~~~v~~L~L~~~~-------------   77 (170)
                      .+.|+.||++||..+.++.      ..+.+|+.     ..+||. |.||.|+. .++|+.|+|+++.             
T Consensus        27 ~~~~~~~l~~~~~~~~~~~------~~~~~w~~-----~~~~c~-w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~   93 (968)
T PLN00113         27 HAEELELLLSFKSSINDPL------KYLSNWNS-----SADVCL-WQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLP   93 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCc------ccCCCCCC-----CCCCCc-CcceecCC-CCcEEEEEecCCCccccCChHHhCCC
Confidence            5689999999999997665      46789986     468999 99999985 5689999998765             


Q ss_pred             ccceecCCCCC---CCCCCcCCCCCCCCEEeccCCccCc----------------------cccCccccccCCCCCCCEE
Q 038455           78 RLKYYDRTSAS---FMNMSLFHPFEELQSLDLSENWFTG----------------------IYENRAYDSFGSLKQLKML  132 (170)
Q Consensus        78 ~l~~~~~~~~~---~~~~~~~~~l~~L~~L~ls~N~l~~----------------------~~p~~~~~~~~~l~~L~~L  132 (170)
                      +|+.+++..+.   .++...+..+++|++|++++|.+++                      .+|.    .++.+++|+.|
T Consensus        94 ~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~----~~~~l~~L~~L  169 (968)
T PLN00113         94 YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPN----DIGSFSSLKVL  169 (968)
T ss_pred             CCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCCh----HHhcCCCCCEE
Confidence            12222222111   1222223344455555555444443                      3333    44555555555


Q ss_pred             ECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455          133 NLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus       133 ~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      ++++|.+.+.+|..+..+++|++|+|++|.+++.+|
T Consensus       170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p  205 (968)
T PLN00113        170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP  205 (968)
T ss_pred             ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCC
Confidence            555555555555555555555555555555554444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.15  E-value=1.9e-11  Score=73.71  Aligned_cols=61  Identities=36%  Similarity=0.447  Sum_probs=52.2

Q ss_pred             CCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcC
Q 038455           99 EELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKI  163 (170)
Q Consensus        99 ~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l  163 (170)
                      ++|++|++++|+++...+.    .|..+++|++|++++|.+....|..|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~----~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPD----SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTT----TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHH----HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4688999999999886556    788899999999999999876677889999999999999875

...

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.14  E-value=6e-11  Score=106.12  Aligned_cols=75  Identities=31%  Similarity=0.384  Sum_probs=62.3

Q ss_pred             CCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCCC
Q 038455           91 NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTK  169 (170)
Q Consensus        91 ~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~  169 (170)
                      .+..+..+++|++|++++|.+++.+|.    .+..+++|+.|+|++|++.+.+|..+..++.|+.|++++|+++|.+|.
T Consensus       515 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        515 IPDELSSCKKLVSLDLSHNQLSGQIPA----SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             CChHHcCccCCCEEECCCCcccccCCh----hHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence            345677788888888888888888887    788888888888888888888888888888888888888888888885

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.89  E-value=3.5e-09  Score=59.30  Aligned_cols=41  Identities=41%  Similarity=0.776  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHhhccC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEec
Q 038455           12 ETERTALLAIKSFFIS-VSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVMCN   62 (170)
Q Consensus        12 ~~~~~aL~~~~~~~~~-~~~~~~~~~~l~~W~~~~~~~~~~~c~~w~gv~c~   62 (170)
                      +.|++||++||+++.. +.      ..+.+|+...   ..++|+ |.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~------~~l~~W~~~~---~~~~C~-W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPS------GVLSSWNPSS---DSDPCS-WSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-------CCCTT--TT-----S-CCC-STTEEE-
T ss_pred             cHHHHHHHHHHHhcccccC------cccccCCCcC---CCCCee-eccEEeC
Confidence            5799999999999974 54      5799999810   278999 9999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.87  E-value=2.6e-10  Score=82.18  Aligned_cols=84  Identities=26%  Similarity=0.448  Sum_probs=66.1

Q ss_pred             CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCCh
Q 038455           65 TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSIL  144 (170)
Q Consensus        65 ~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p  144 (170)
                      -..++.|.|+++. ++..         ++.+..|.+|+.|++++|++.. +|.    .++.+++|+.|+++-|++. ..|
T Consensus        32 ~s~ITrLtLSHNK-l~~v---------ppnia~l~nlevln~~nnqie~-lp~----~issl~klr~lnvgmnrl~-~lp   95 (264)
T KOG0617|consen   32 MSNITRLTLSHNK-LTVV---------PPNIAELKNLEVLNLSNNQIEE-LPT----SISSLPKLRILNVGMNRLN-ILP   95 (264)
T ss_pred             hhhhhhhhcccCc-eeec---------CCcHHHhhhhhhhhcccchhhh-cCh----hhhhchhhhheecchhhhh-cCc
Confidence            3468888899888 5444         4556778888888888888876 565    7888888888888888887 788


Q ss_pred             hhccCCCCCCEEeCCCCcCc
Q 038455          145 PYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus       145 ~~~~~l~~L~~L~L~~N~l~  164 (170)
                      ..|+.++.|++|||.+|++.
T Consensus        96 rgfgs~p~levldltynnl~  115 (264)
T KOG0617|consen   96 RGFGSFPALEVLDLTYNNLN  115 (264)
T ss_pred             cccCCCchhhhhhccccccc
Confidence            88888888888888888775

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.84  E-value=3.9e-09  Score=63.46  Aligned_cols=60  Identities=30%  Similarity=0.434  Sum_probs=52.4

Q ss_pred             CeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCC
Q 038455           67 RVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYV  139 (170)
Q Consensus        67 ~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l  139 (170)
                      +++.|+++++. ++.+        ++..|..+++|++|++++|.++...|.    .|..+++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~-l~~i--------~~~~f~~l~~L~~L~l~~N~l~~i~~~----~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNK-LTEI--------PPDSFSNLPNLETLDLSNNNLTSIPPD----AFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSST-ESEE--------CTTTTTTGTTESEEEETSSSESEEETT----TTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCC-CCcc--------CHHHHcCCCCCCEeEccCCccCccCHH----HHcCCCCCCEEeCcCCcC
Confidence            57888999887 5444        667899999999999999999987777    899999999999999975

...

>PLN03150 hypothetical protein; Provisional

Probab=98.79  E-value=1.2e-08  Score=87.68  Aligned_cols=90  Identities=23%  Similarity=0.257  Sum_probs=74.8

Q ss_pred             CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh
Q 038455           66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP  145 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~  145 (170)
                      .+++.|+|+++. +.+.        .+..++.+++|+.|+|++|++++.+|.    .++.+++|+.|+|++|.++|.+|.
T Consensus       442 ~~L~~L~Ls~N~-l~g~--------iP~~~~~l~~L~~LdLs~N~lsg~iP~----~l~~L~~L~~L~Ls~N~l~g~iP~  508 (623)
T PLN03150        442 RHLQSINLSGNS-IRGN--------IPPSLGSITSLEVLDLSYNSFNGSIPE----SLGQLTSLRILNLNGNSLSGRVPA  508 (623)
T ss_pred             CCCCEEECCCCc-ccCc--------CChHHhCCCCCCEEECCCCCCCCCCch----HHhcCCCCCEEECcCCcccccCCh
Confidence            457778888776 4332        355688999999999999999999998    999999999999999999999999


Q ss_pred             hccCC-CCCCEEeCCCCcCcccCC
Q 038455          146 YLNTL-TSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus       146 ~~~~l-~~L~~L~L~~N~l~g~iP  168 (170)
                      .++.+ .++..+++.+|.....+|
T Consensus       509 ~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        509 ALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             HHhhccccCceEEecCCccccCCC
Confidence            88764 467889999997654444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.66  E-value=2.1e-08  Score=72.93  Aligned_cols=82  Identities=27%  Similarity=0.344  Sum_probs=35.3

Q ss_pred             CeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCcccccc-CCCCCCCEEECCCCCCCCC-Ch
Q 038455           67 RVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSF-GSLKQLKMLNLGFNYVNDS-IL  144 (170)
Q Consensus        67 ~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~-~~l~~L~~L~Ls~N~l~g~-~p  144 (170)
                      +++.|+|+++. ++.+          ..+..+++|+.|++++|.++.. ..    .+ ..+++|+.|++++|+|... .-
T Consensus        43 ~L~~L~Ls~N~-I~~l----------~~l~~L~~L~~L~L~~N~I~~i-~~----~l~~~lp~L~~L~L~~N~I~~l~~l  106 (175)
T PF14580_consen   43 KLEVLDLSNNQ-ITKL----------EGLPGLPRLKTLDLSNNRISSI-SE----GLDKNLPNLQELYLSNNKISDLNEL  106 (175)
T ss_dssp             T--EEE-TTS---S------------TT----TT--EEE--SS---S--CH----HHHHH-TT--EEE-TTS---SCCCC
T ss_pred             CCCEEECCCCC-Cccc----------cCccChhhhhhcccCCCCCCcc-cc----chHHhCCcCCEEECcCCcCCChHHh
Confidence            46667777776 4333          3466788888899999988864 32    33 3578888999999888642 22


Q ss_pred             hhccCCCCCCEEeCCCCcCc
Q 038455          145 PYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus       145 ~~~~~l~~L~~L~L~~N~l~  164 (170)
                      ..+..+++|++|+|.+|+++
T Consensus       107 ~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen  107 EPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             GGGGG-TT--EEE-TT-GGG
T ss_pred             HHHHcCCCcceeeccCCccc
Confidence            46778888999999988886

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.61  E-value=3.7e-08  Score=71.62  Aligned_cols=80  Identities=34%  Similarity=0.426  Sum_probs=28.8

Q ss_pred             CeEEeecCCcCccceecCCCCCCCCCCcCC-CCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh
Q 038455           67 RVMQLSLNYTRRLKYYDRTSASFMNMSLFH-PFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP  145 (170)
Q Consensus        67 ~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~-~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~  145 (170)
                      ++.+|+|.++. ++.+          ..++ .+.+|+.|++++|.++. ++     .+..++.|+.|++++|+|+ .+.+
T Consensus        20 ~~~~L~L~~n~-I~~I----------e~L~~~l~~L~~L~Ls~N~I~~-l~-----~l~~L~~L~~L~L~~N~I~-~i~~   81 (175)
T PF14580_consen   20 KLRELNLRGNQ-ISTI----------ENLGATLDKLEVLDLSNNQITK-LE-----GLPGLPRLKTLDLSNNRIS-SISE   81 (175)
T ss_dssp             ---------------------------S--TT-TT--EEE-TTS--S---T-----T----TT--EEE--SS----S-CH
T ss_pred             ccccccccccc-cccc----------cchhhhhcCCCEEECCCCCCcc-cc-----CccChhhhhhcccCCCCCC-cccc
Confidence            56788888887 4332          2344 57889999999999987 44     6888999999999999999 4544


Q ss_pred             hc-cCCCCCCEEeCCCCcCc
Q 038455          146 YL-NTLTSLTTLNLSYNKIE  164 (170)
Q Consensus       146 ~~-~~l~~L~~L~L~~N~l~  164 (170)
                      .+ ..+++|+.|++++|+|.
T Consensus        82 ~l~~~lp~L~~L~L~~N~I~  101 (175)
T PF14580_consen   82 GLDKNLPNLQELYLSNNKIS  101 (175)
T ss_dssp             HHHHH-TT--EEE-TTS---
T ss_pred             chHHhCCcCCEEECcCCcCC
Confidence            44 46899999999999986

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.59  E-value=2.1e-08  Score=83.91  Aligned_cols=79  Identities=23%  Similarity=0.317  Sum_probs=66.5

Q ss_pred             CCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455           86 SASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus        86 ~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g  165 (170)
                      .+..+..+.|..|.+++.|+|+.|+++..-..    .+.+|+.|+.|+||+|.|....++.+...++|+.|+|++|+|+ 
T Consensus       256 ~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g----~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-  330 (873)
T KOG4194|consen  256 DISKLDDGAFYGLEKMEHLNLETNRLQAVNEG----WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-  330 (873)
T ss_pred             CcccccCcceeeecccceeecccchhhhhhcc----cccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-
Confidence            34566677888888999999999999876666    7888999999999999998888888989999999999999998 


Q ss_pred             cCCC
Q 038455          166 SRTK  169 (170)
Q Consensus       166 ~iP~  169 (170)
                      ++|+
T Consensus       331 ~l~~  334 (873)
T KOG4194|consen  331 RLDE  334 (873)
T ss_pred             cCCh
Confidence            5654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.53  E-value=7.1e-09  Score=82.89  Aligned_cols=86  Identities=29%  Similarity=0.342  Sum_probs=66.9

Q ss_pred             CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEEC-CCCCCCCCCh
Q 038455           66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNL-GFNYVNDSIL  144 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~L-s~N~l~g~~p  144 (170)
                      ...++|+|+.++         |..+++..|+.+++|+.|||++|.|+.+-|.    .|..+++|..|-+ ++|+|+...-
T Consensus        67 ~~tveirLdqN~---------I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~----AF~GL~~l~~Lvlyg~NkI~~l~k  133 (498)
T KOG4237|consen   67 PETVEIRLDQNQ---------ISSIPPGAFKTLHRLRRLDLSKNNISFIAPD----AFKGLASLLSLVLYGNNKITDLPK  133 (498)
T ss_pred             CcceEEEeccCC---------cccCChhhccchhhhceecccccchhhcChH----hhhhhHhhhHHHhhcCCchhhhhh
Confidence            356788888777         6777899999999999999999999998887    8888887777665 4488884444


Q ss_pred             hhccCCCCCCEEeCCCCcCc
Q 038455          145 PYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus       145 ~~~~~l~~L~~L~L~~N~l~  164 (170)
                      ..|++|..|+.|.+.-|++.
T Consensus       134 ~~F~gL~slqrLllNan~i~  153 (498)
T KOG4237|consen  134 GAFGGLSSLQRLLLNANHIN  153 (498)
T ss_pred             hHhhhHHHHHHHhcChhhhc
Confidence            56777777777777766665

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.53  E-value=7.1e-08  Score=54.18  Aligned_cols=36  Identities=36%  Similarity=0.481  Sum_probs=16.6

Q ss_pred             CCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCC
Q 038455          100 ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVN  140 (170)
Q Consensus       100 ~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~  140 (170)
                      +|++|++++|+|+. +|+    .+.++++|+.|++++|+|+
T Consensus         2 ~L~~L~l~~N~i~~-l~~----~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPP----ELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS-HGG----HGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc-cCc----hHhCCCCCCEEEecCCCCC
Confidence            34555555555543 332    3455555555555555544

...

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.52  E-value=5.3e-08  Score=78.33  Aligned_cols=74  Identities=27%  Similarity=0.374  Sum_probs=58.8

Q ss_pred             CCcCCCCCCCCEEeccCCccCccccCccc--------------------cccCCCCCCCEEECCCCCCCCCChhhccCCC
Q 038455           92 MSLFHPFEELQSLDLSENWFTGIYENRAY--------------------DSFGSLKQLKMLNLGFNYVNDSILPYLNTLT  151 (170)
Q Consensus        92 ~~~~~~l~~L~~L~ls~N~l~~~~p~~~~--------------------~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~  151 (170)
                      |.+++.+..|+.|+++.|+|.. +|..-+                    ..+.++.+|..|||.+|.+. .+|+.+++|+
T Consensus       451 P~e~~~lv~Lq~LnlS~NrFr~-lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmt  528 (565)
T KOG0472|consen  451 PEEMGSLVRLQTLNLSFNRFRM-LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMT  528 (565)
T ss_pred             chhhhhhhhhheeccccccccc-chHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcccc
Confidence            4556777778888888888764 332000                    14788899999999999999 8999999999


Q ss_pred             CCCEEeCCCCcCcccCCC
Q 038455          152 SLTTLNLSYNKIEGSRTK  169 (170)
Q Consensus       152 ~L~~L~L~~N~l~g~iP~  169 (170)
                      +|++|.+++|+|+  .|+
T Consensus       529 nL~hLeL~gNpfr--~Pr  544 (565)
T KOG0472|consen  529 NLRHLELDGNPFR--QPR  544 (565)
T ss_pred             ceeEEEecCCccC--CCH
Confidence            9999999999998  554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.46  E-value=8.5e-09  Score=74.45  Aligned_cols=70  Identities=31%  Similarity=0.363  Sum_probs=36.3

Q ss_pred             cCCCCCCCCEEeccCCccC-ccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCCC
Q 038455           94 LFHPFEELQSLDLSENWFT-GIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTK  169 (170)
Q Consensus        94 ~~~~l~~L~~L~ls~N~l~-~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~  169 (170)
                      .|+.++.|+.|||+.|++. ..+|.    .|..++.|+.|+|+.|.|. .+|+.++++++|+.|.+..|.+- ++|+
T Consensus        97 gfgs~p~levldltynnl~e~~lpg----nff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpk  167 (264)
T KOG0617|consen   97 GFGSFPALEVLDLTYNNLNENSLPG----NFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPK  167 (264)
T ss_pred             ccCCCchhhhhhccccccccccCCc----chhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcH
Confidence            3444444444444444442 22333    3444444444444444444 45666666666666666666665 4554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.40  E-value=1.6e-07  Score=78.66  Aligned_cols=74  Identities=26%  Similarity=0.313  Sum_probs=54.4

Q ss_pred             CCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455           87 ASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        87 ~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      ++.++.+.|..=.++++|+|++|.|+..-..    .|..+.+|..|.|+.|+++...+..|+++++|+.|+|..|+|.
T Consensus       161 is~i~~~sfp~~~ni~~L~La~N~It~l~~~----~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir  234 (873)
T KOG4194|consen  161 ISEIPKPSFPAKVNIKKLNLASNRITTLETG----HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR  234 (873)
T ss_pred             hhcccCCCCCCCCCceEEeeccccccccccc----cccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence            3445555566666788888888888765444    6777788888888888888555557777888888888888875

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.27  E-value=9.5e-07  Score=49.55  Aligned_cols=40  Identities=40%  Similarity=0.522  Sum_probs=33.7

Q ss_pred             CCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455          127 KQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus       127 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      ++|++|++++|+|+ .+|+.+++|++|+.|++++|+|+ .+|
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~-~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS-DIS   40 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC-CCc
Confidence            47999999999999 67888999999999999999998 554

...

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.23  E-value=2.2e-07  Score=78.72  Aligned_cols=68  Identities=26%  Similarity=0.340  Sum_probs=31.2

Q ss_pred             CCCCCCCCEEeccCCccC-ccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455           95 FHPFEELQSLDLSENWFT-GIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus        95 ~~~l~~L~~L~ls~N~l~-~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      +..|+.|+.+++..|++. .-+|.    .+..+..|..||||+|++. ..|..+..-+++-+|+|++|+|. +||
T Consensus        74 Ls~Lp~LRsv~~R~N~LKnsGiP~----diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIP  142 (1255)
T KOG0444|consen   74 LSDLPRLRSVIVRDNNLKNSGIPT----DIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIP  142 (1255)
T ss_pred             hccchhhHHHhhhccccccCCCCc----hhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCC
Confidence            344444444444444441 11333    4444444555555555544 44444444444444444444444 444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.18  E-value=1.6e-06  Score=75.92  Aligned_cols=60  Identities=28%  Similarity=0.197  Sum_probs=43.3

Q ss_pred             CCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455          100 ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus       100 ~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      +|+.|++++|.++. +|.    .   +.+|+.|++++|+|+ .+|..+..+++|+.|+|++|+|+|.+|
T Consensus       403 ~L~~LdLS~N~Lss-IP~----l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~  462 (788)
T PRK15387        403 ELKELMVSGNRLTS-LPM----L---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL  462 (788)
T ss_pred             CCCEEEccCCcCCC-CCc----c---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence            44555555555544 332    2   235677788888887 688889999999999999999998765

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.18  E-value=2.8e-07  Score=78.13  Aligned_cols=82  Identities=27%  Similarity=0.285  Sum_probs=45.8

Q ss_pred             CeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhh
Q 038455           67 RVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY  146 (170)
Q Consensus        67 ~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~  146 (170)
                      .++.|||++++ |+..         |..+..-.++-+|+||+|+|..+..+    -|.+++.|-.||||+|++. .+|+.
T Consensus       104 dLt~lDLShNq-L~Ev---------P~~LE~AKn~iVLNLS~N~IetIPn~----lfinLtDLLfLDLS~NrLe-~LPPQ  168 (1255)
T KOG0444|consen  104 DLTILDLSHNQ-LREV---------PTNLEYAKNSIVLNLSYNNIETIPNS----LFINLTDLLFLDLSNNRLE-MLPPQ  168 (1255)
T ss_pred             cceeeecchhh-hhhc---------chhhhhhcCcEEEEcccCccccCCch----HHHhhHhHhhhccccchhh-hcCHH
Confidence            45667777776 4433         33344445555566666665543222    4555556666666666665 45555


Q ss_pred             ccCCCCCCEEeCCCCcC
Q 038455          147 LNTLTSLTTLNLSYNKI  163 (170)
Q Consensus       147 ~~~l~~L~~L~L~~N~l  163 (170)
                      +..+..|++|.|++|++
T Consensus       169 ~RRL~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  169 IRRLSMLQTLKLSNNPL  185 (1255)
T ss_pred             HHHHhhhhhhhcCCChh
Confidence            55666666666666654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.17  E-value=1.8e-07  Score=81.60  Aligned_cols=90  Identities=29%  Similarity=0.373  Sum_probs=64.8

Q ss_pred             CCceEecCCCCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECC
Q 038455           56 WEGVMCNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLG  135 (170)
Q Consensus        56 w~gv~c~~~~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls  135 (170)
                      |.-..|   -.++.-|+|+++. |        ..++...+.++..|+.|+||+|+++. +|.    .+.+++.|++|...
T Consensus       376 ~p~l~~---~~hLKVLhLsyNr-L--------~~fpas~~~kle~LeeL~LSGNkL~~-Lp~----tva~~~~L~tL~ah  438 (1081)
T KOG0618|consen  376 FPVLVN---FKHLKVLHLSYNR-L--------NSFPASKLRKLEELEELNLSGNKLTT-LPD----TVANLGRLHTLRAH  438 (1081)
T ss_pred             hhhhcc---ccceeeeeecccc-c--------ccCCHHHHhchHHhHHHhcccchhhh-hhH----HHHhhhhhHHHhhc
Confidence            444444   3467888888887 3        34456678888889999999999887 566    67777777777777


Q ss_pred             CCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455          136 FNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus       136 ~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      +|++. ..| .+..+++|+++|++.|+++
T Consensus       439 sN~l~-~fP-e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  439 SNQLL-SFP-ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             CCcee-ech-hhhhcCcceEEecccchhh
Confidence            77776 566 6677777777777777765

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.11  E-value=4e-05  Score=67.35  Aligned_cols=35  Identities=9%  Similarity=0.066  Sum_probs=26.1

Q ss_pred             cCCcHHHHHHHHHHHhhccCCCCCCCCCCCCCC----CCCCCCCCCCCCCC
Q 038455            8 KACLETERTALLAIKSFFISVSDVGYDDKILPS----WVGEDDGMPSDCCD   54 (170)
Q Consensus         8 ~~~~~~~~~aL~~~~~~~~~~~~~~~~~~~l~~----W~~~~~~~~~~~c~   54 (170)
                      ....+.|...++++...+..|.       ...+    |.+     .+++|.
T Consensus        58 ~~~~~~~~~~~~~~~~~l~~p~-------~~~~~~~~~~~-----~~~fc~   96 (754)
T PRK15370         58 ETASPEEIKSKFECLRMLAFPA-------YADNIQYSRGG-----ADQYCI   96 (754)
T ss_pred             CCCCHHHHHHHHHHHHHhcCCc-------hhhccccccCC-----CCcccc
Confidence            3456788999999999987775       4444    887     578885

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.07  E-value=4e-07  Score=73.38  Aligned_cols=68  Identities=25%  Similarity=0.303  Sum_probs=53.5

Q ss_pred             CCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455           90 MNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        90 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      ++......+.+|..||+..|+++. .|.    ++..+++|++||+|+|.|+ .+|..++++ .|+.|.+.+|++.
T Consensus       243 lpae~~~~L~~l~vLDLRdNklke-~Pd----e~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  243 LPAEHLKHLNSLLVLDLRDNKLKE-VPD----EICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR  310 (565)
T ss_pred             hHHHHhcccccceeeecccccccc-Cch----HHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH
Confidence            334445577888888888888876 576    7888888888888888888 577888888 8888888888865

>PLN03210 Resistant to P

Probab=98.00  E-value=2e-05  Score=72.33  Aligned_cols=61  Identities=18%  Similarity=0.161  Sum_probs=29.2

Q ss_pred             CCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCC
Q 038455           96 HPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYN  161 (170)
Q Consensus        96 ~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N  161 (170)
                      ..+++|+.|+|+++.....+|     .+..+++|+.|+|++|.....+|..++.+++|+.|++++|
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~~ip-----~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c  691 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLKEIP-----DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC  691 (1153)
T ss_pred             ccCCCCCEEECCCCCCcCcCC-----ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence            445555555555443323333     3444555555555554433345555555555555555544

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.98  E-value=2e-06  Score=69.17  Aligned_cols=68  Identities=29%  Similarity=0.337  Sum_probs=49.2

Q ss_pred             CcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455           93 SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        93 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      .-|..|++|++|+|++|+++.+-+.    .|..+.+++.|.|..|+|...--..|.++..|++|+|.+|+|+
T Consensus       268 ~cf~~L~~L~~lnlsnN~i~~i~~~----aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it  335 (498)
T KOG4237|consen  268 KCFKKLPNLRKLNLSNNKITRIEDG----AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT  335 (498)
T ss_pred             HHHhhcccceEeccCCCccchhhhh----hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence            3477888888888888888876665    6777777777777777776444456677777777777777776

>PLN03210 Resistant to P

Probab=97.96  E-value=2.3e-05  Score=71.96  Aligned_cols=70  Identities=23%  Similarity=0.074  Sum_probs=48.5

Q ss_pred             cCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455           94 LFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus        94 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      .+..+++|+.|+|++|.....+|.    .+..+++|+.|++++|.....+|..+ ++++|+.|++++|...+.+|
T Consensus       652 ~ls~l~~Le~L~L~~c~~L~~lp~----si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p  721 (1153)
T PLN03210        652 DLSMATNLETLKLSDCSSLVELPS----SIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFP  721 (1153)
T ss_pred             ccccCCcccEEEecCCCCccccch----hhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccc
Confidence            466778888888888765556777    78888888888888765544666654 56677777776665443443

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.87  E-value=3.2e-06  Score=74.03  Aligned_cols=85  Identities=24%  Similarity=0.374  Sum_probs=69.9

Q ss_pred             eEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhc
Q 038455           68 VMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYL  147 (170)
Q Consensus        68 v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~  147 (170)
                      +..|+++++. +..+         |..+..+.+|+.|+++.|.+.. .|.    ...++.+|++|.|.+|++. ..|..+
T Consensus        47 L~~l~lsnn~-~~~f---------p~~it~l~~L~~ln~s~n~i~~-vp~----s~~~~~~l~~lnL~~n~l~-~lP~~~  110 (1081)
T KOG0618|consen   47 LKSLDLSNNQ-ISSF---------PIQITLLSHLRQLNLSRNYIRS-VPS----SCSNMRNLQYLNLKNNRLQ-SLPASI  110 (1081)
T ss_pred             eEEeeccccc-cccC---------CchhhhHHHHhhcccchhhHhh-Cch----hhhhhhcchhheeccchhh-cCchhH
Confidence            7788888887 2222         3456678889999999999877 566    8889999999999999988 789999


Q ss_pred             cCCCCCCEEeCCCCcCcccCCC
Q 038455          148 NTLTSLTTLNLSYNKIEGSRTK  169 (170)
Q Consensus       148 ~~l~~L~~L~L~~N~l~g~iP~  169 (170)
                      ..+++|+.|+++.|+|. .+|.
T Consensus       111 ~~lknl~~LdlS~N~f~-~~Pl  131 (1081)
T KOG0618|consen  111 SELKNLQYLDLSFNHFG-PIPL  131 (1081)
T ss_pred             HhhhcccccccchhccC-CCch
Confidence            99999999999999997 6764

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.84  E-value=1.6e-06  Score=60.48  Aligned_cols=88  Identities=20%  Similarity=0.265  Sum_probs=63.8

Q ss_pred             CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCCh
Q 038455           65 TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSIL  144 (170)
Q Consensus        65 ~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p  144 (170)
                      ..+++.++|+++. ++.+        ++..-..++.++.|++++|.++. +|.    ++..++.|+.|+++.|.+. ..|
T Consensus        52 ~~el~~i~ls~N~-fk~f--------p~kft~kf~t~t~lNl~~neisd-vPe----E~Aam~aLr~lNl~~N~l~-~~p  116 (177)
T KOG4579|consen   52 GYELTKISLSDNG-FKKF--------PKKFTIKFPTATTLNLANNEISD-VPE----ELAAMPALRSLNLRFNPLN-AEP  116 (177)
T ss_pred             CceEEEEecccch-hhhC--------CHHHhhccchhhhhhcchhhhhh-chH----HHhhhHHhhhcccccCccc-cch
Confidence            3467777777777 4333        33333455678888888888877 677    7888888888888888888 567


Q ss_pred             hhccCCCCCCEEeCCCCcCcccCC
Q 038455          145 PYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus       145 ~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      ..+..+.+|..|+..+|.+. +||
T Consensus       117 ~vi~~L~~l~~Lds~~na~~-eid  139 (177)
T KOG4579|consen  117 RVIAPLIKLDMLDSPENARA-EID  139 (177)
T ss_pred             HHHHHHHhHHHhcCCCCccc-cCc
Confidence            76767888888888887765 554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.79  E-value=1.4e-05  Score=64.90  Aligned_cols=68  Identities=32%  Similarity=0.462  Sum_probs=52.6

Q ss_pred             CCCCC-CCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCCC
Q 038455           95 FHPFE-ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTK  169 (170)
Q Consensus        95 ~~~l~-~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~  169 (170)
                      ...+. +|+.|++++|.+.. +|.    .+..++.|+.|++++|++. .+|...+.++.|+.|++++|+++ .+|.
T Consensus       135 ~~~~~~nL~~L~l~~N~i~~-l~~----~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~  203 (394)
T COG4886         135 IGLLKSNLKELDLSDNKIES-LPS----PLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPP  203 (394)
T ss_pred             cccchhhcccccccccchhh-hhh----hhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCch
Confidence            33443 78888888888876 444    6778888888888888888 66766667888888888888887 6664

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.77  E-value=5.7e-05  Score=66.37  Aligned_cols=58  Identities=24%  Similarity=0.279  Sum_probs=33.8

Q ss_pred             CCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455          100 ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus       100 ~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      .|+.|+|++|.+.. +|.    .+.  ++|+.|++++|++. .+|..+.  ++|+.|++++|+|+ .+|
T Consensus       242 ~L~~L~Ls~N~L~~-LP~----~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP  299 (754)
T PRK15370        242 TIQEMELSINRITE-LPE----RLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLP  299 (754)
T ss_pred             cccEEECcCCccCc-CCh----hHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCc
Confidence            34455555555442 333    332  35777777777776 4565443  46777788777777 455

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.77  E-value=6.1e-06  Score=64.62  Aligned_cols=38  Identities=29%  Similarity=0.386  Sum_probs=19.8

Q ss_pred             CCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCC
Q 038455           97 PFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVN  140 (170)
Q Consensus        97 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~  140 (170)
                      -++.++.|++++|.+...  .    .+..+++|+.||||+|.++
T Consensus       305 L~Pkir~L~lS~N~i~~v--~----nLa~L~~L~~LDLS~N~Ls  342 (490)
T KOG1259|consen  305 LAPKLRRLILSQNRIRTV--Q----NLAELPQLQLLDLSGNLLA  342 (490)
T ss_pred             hccceeEEeccccceeee--h----hhhhcccceEeecccchhH
Confidence            344555555555555432  1    3445555555555555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.72  E-value=2.4e-05  Score=59.61  Aligned_cols=94  Identities=26%  Similarity=0.338  Sum_probs=62.0

Q ss_pred             CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCC--ccCccccCccccccCCCCCCCEEECCCCCCCC-C
Q 038455           66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSEN--WFTGIYENRAYDSFGSLKQLKMLNLGFNYVND-S  142 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N--~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g-~  142 (170)
                      +.+..+...+.. |+.+.+...+......|..|++|++|.++.|  ++.+.++.    -...+++|++|+++.|+|.- .
T Consensus        33 g~~~gl~d~~~~-le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~v----l~e~~P~l~~l~ls~Nki~~ls  107 (260)
T KOG2739|consen   33 GKLGGLTDEFVE-LELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEV----LAEKAPNLKVLNLSGNKIKDLS  107 (260)
T ss_pred             CCcccccccccc-hhhhhhhccceeecccCCCcchhhhhcccCCccccccccee----hhhhCCceeEEeecCCcccccc
Confidence            344444444444 4444333333333456778899999999999  66666655    55667999999999999872 1


Q ss_pred             ChhhccCCCCCCEEeCCCCcCc
Q 038455          143 ILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus       143 ~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      .-..+..+.+|..|++.++..+
T Consensus       108 tl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  108 TLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             ccchhhhhcchhhhhcccCCcc
Confidence            1123566777888888887655

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.72  E-value=1.8e-05  Score=62.00  Aligned_cols=65  Identities=26%  Similarity=0.353  Sum_probs=31.7

Q ss_pred             CCCCCCCEEeccCCccCcc----ccCccccccCCCCCCCEEECCCCCCCCC----ChhhccCCCCCCEEeCCCCcCc
Q 038455           96 HPFEELQSLDLSENWFTGI----YENRAYDSFGSLKQLKMLNLGFNYVNDS----ILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        96 ~~l~~L~~L~ls~N~l~~~----~p~~~~~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      ..+++|++|++++|.+.+.    ++.    .+..+++|+.|++++|.+.+.    ++..+..+++|++|++++|.++
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~----~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAE----GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHH----HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            3444555566655555421    111    233344566666665555432    2223444555666666655554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.65  E-value=3.3e-06  Score=70.66  Aligned_cols=69  Identities=20%  Similarity=0.274  Sum_probs=55.9

Q ss_pred             CCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455           92 MSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus        92 ~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      ++.++.+..|+.|.+..|++.. +|+    ++..|+ |..||+|.|+++ .+|-.|.+|+.|++|-|.+|.+. +-|
T Consensus       182 psql~~l~slr~l~vrRn~l~~-lp~----El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPP  250 (722)
T KOG0532|consen  182 PSQLGYLTSLRDLNVRRNHLED-LPE----ELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPP  250 (722)
T ss_pred             hHHhhhHHHHHHHHHhhhhhhh-CCH----HHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CCh
Confidence            3456677788888888888876 455    666554 889999999999 89999999999999999999998 434

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.59  E-value=7.8e-06  Score=57.12  Aligned_cols=65  Identities=25%  Similarity=0.303  Sum_probs=54.8

Q ss_pred             CCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455           95 FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        95 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      +....+|+.++|++|.+....+.    .-..++.++.|++++|.|+ .+|+.+..++.|+.|+++.|.|.
T Consensus        49 l~~~~el~~i~ls~N~fk~fp~k----ft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~  113 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNGFKKFPKK----FTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN  113 (177)
T ss_pred             HhCCceEEEEecccchhhhCCHH----Hhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc
Confidence            45566789999999999885443    3344568999999999999 79999999999999999999987

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.55  E-value=2.7e-05  Score=61.00  Aligned_cols=66  Identities=26%  Similarity=0.304  Sum_probs=37.5

Q ss_pred             CCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCC----ChhhccCCCCCCEEeCCCCcCc
Q 038455           99 EELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDS----ILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        99 ~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      ++|+.|++++|.+++.........+..+++|+.|++++|.+.+.    ++..+..+++|+.|++++|.++
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT  206 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence            56677777777666321110001345556677777777776632    2334455567777777777665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.50  E-value=0.0002  Score=63.12  Aligned_cols=14  Identities=29%  Similarity=0.444  Sum_probs=7.0

Q ss_pred             CCCCEEeCCCCcCc
Q 038455          151 TSLTTLNLSYNKIE  164 (170)
Q Consensus       151 ~~L~~L~L~~N~l~  164 (170)
                      ++|+.|++++|+|+
T Consensus       302 ~~L~~LdLS~N~L~  315 (788)
T PRK15387        302 PGLQELSVSDNQLA  315 (788)
T ss_pred             cccceeECCCCccc
Confidence            34555555555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.46  E-value=3.9e-05  Score=60.23  Aligned_cols=60  Identities=33%  Similarity=0.406  Sum_probs=51.4

Q ss_pred             CCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455           98 FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        98 l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      ...|+.+||++|.|+. +..    ...-++.++.|++|+|.|.. + ..+..+.+|+.|||++|.++
T Consensus       283 Wq~LtelDLS~N~I~~-iDE----SvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls  342 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQ-IDE----SVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA  342 (490)
T ss_pred             Hhhhhhccccccchhh-hhh----hhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhH
Confidence            3579999999999987 445    78888999999999999983 3 34888999999999999876

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.45  E-value=0.00018  Score=53.29  Aligned_cols=82  Identities=24%  Similarity=0.216  Sum_probs=61.4

Q ss_pred             CeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCCh--
Q 038455           67 RVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSIL--  144 (170)
Q Consensus        67 ~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p--  144 (170)
                      ....+||+.+. +..          ...|..++.|.+|.+.+|+|+.+-|.    --..+++|+.|.|.+|.|.. +-  
T Consensus        43 ~~d~iDLtdNd-l~~----------l~~lp~l~rL~tLll~nNrIt~I~p~----L~~~~p~l~~L~LtnNsi~~-l~dl  106 (233)
T KOG1644|consen   43 QFDAIDLTDND-LRK----------LDNLPHLPRLHTLLLNNNRITRIDPD----LDTFLPNLKTLILTNNSIQE-LGDL  106 (233)
T ss_pred             ccceecccccc-hhh----------cccCCCccccceEEecCCcceeeccc----hhhhccccceEEecCcchhh-hhhc
Confidence            34556666666 332          35678889999999999999987775    44456889999999999862 22  


Q ss_pred             hhccCCCCCCEEeCCCCcCc
Q 038455          145 PYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus       145 ~~~~~l~~L~~L~L~~N~l~  164 (170)
                      +.+..++.|++|.+-+|+.+
T Consensus       107 ~pLa~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen  107 DPLASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             chhccCCccceeeecCCchh
Confidence            34677889999999998875

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.45  E-value=3.7e-05  Score=68.61  Aligned_cols=73  Identities=27%  Similarity=0.278  Sum_probs=62.5

Q ss_pred             CCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccC
Q 038455           90 MNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSR  167 (170)
Q Consensus        90 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~i  167 (170)
                      +....|..++.|++|||++|.=-+.+|.    .++.|-+|++|+++...+. .+|..+++|+.|.+|+++.+.....+
T Consensus       562 is~~ff~~m~~LrVLDLs~~~~l~~LP~----~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~  634 (889)
T KOG4658|consen  562 ISGEFFRSLPLLRVLDLSGNSSLSKLPS----SIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI  634 (889)
T ss_pred             cCHHHHhhCcceEEEECCCCCccCcCCh----HHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccc
Confidence            3345588999999999999876677898    9999999999999999999 89999999999999999887654333

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.26  E-value=0.00016  Score=59.37  Aligned_cols=62  Identities=44%  Similarity=0.532  Sum_probs=46.0

Q ss_pred             CCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455           95 FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        95 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      +..+++|++|++++|.|+...      .+..++.|+.|++++|.|+. + ..+..++.|+.+++++|.++
T Consensus       114 l~~~~~L~~L~ls~N~I~~i~------~l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~l~~n~i~  175 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSFNKITKLE------GLSTLTLLKELNLSGNLISD-I-SGLESLKSLKLLDLSYNRIV  175 (414)
T ss_pred             hhhhhcchheecccccccccc------chhhccchhhheeccCcchh-c-cCCccchhhhcccCCcchhh
Confidence            567888888888888887743      46667778888888888873 2 34555778888888888876

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.24  E-value=1.8e-05  Score=66.42  Aligned_cols=47  Identities=34%  Similarity=0.379  Sum_probs=22.3

Q ss_pred             CCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCC
Q 038455          101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSL  153 (170)
Q Consensus       101 L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L  153 (170)
                      |+.|-+++|+++. +|.    +++.+..|..||.+.|.+. .+|..++.+.+|
T Consensus       145 Lkvli~sNNkl~~-lp~----~ig~~~tl~~ld~s~nei~-slpsql~~l~sl  191 (722)
T KOG0532|consen  145 LKVLIVSNNKLTS-LPE----EIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL  191 (722)
T ss_pred             ceeEEEecCcccc-CCc----ccccchhHHHhhhhhhhhh-hchHHhhhHHHH
Confidence            5555555555544 343    4444455555555555554 334333333333

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.17  E-value=0.00012  Score=59.53  Aligned_cols=64  Identities=30%  Similarity=0.403  Sum_probs=53.6

Q ss_pred             CcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCc
Q 038455           93 SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNK  162 (170)
Q Consensus        93 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~  162 (170)
                      ..+..++.|+.|++++|++.. +|.    ....++.|+.|++++|++. .+|.....+..|+.|.+++|+
T Consensus       157 ~~~~~l~~L~~L~l~~N~l~~-l~~----~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         157 SPLRNLPNLKNLDLSFNDLSD-LPK----LLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             hhhhccccccccccCCchhhh-hhh----hhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence            357889999999999999987 454    5558899999999999999 778777677779999999985

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.17  E-value=0.00017  Score=64.49  Aligned_cols=65  Identities=32%  Similarity=0.321  Sum_probs=56.2

Q ss_pred             CCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCC
Q 038455           92 MSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYN  161 (170)
Q Consensus        92 ~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N  161 (170)
                      |..++.|-+|++|++++..+.. +|.    .+++|+.|.+|++..+.....+|.....|++|++|.+-.-
T Consensus       588 P~~I~~Li~LryL~L~~t~I~~-LP~----~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  588 PSSIGELVHLRYLDLSDTGISH-LPS----GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ChHHhhhhhhhcccccCCCccc-cch----HHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            5678889999999999999986 788    9999999999999998776567777778999999988554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.01  E-value=6.5e-05  Score=64.94  Aligned_cols=65  Identities=32%  Similarity=0.367  Sum_probs=31.7

Q ss_pred             CcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455           93 SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        93 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      ..+..|++|+.|||+.|.+.. +|.-   ....++ |+.|.+.+|.++..  ..+.+|++|+.||+++|-++
T Consensus       203 ~~Lr~l~~LkhLDlsyN~L~~-vp~l---~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~  267 (1096)
T KOG1859|consen  203 DNLRRLPKLKHLDLSYNCLRH-VPQL---SMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLS  267 (1096)
T ss_pred             HHHHhcccccccccccchhcc-cccc---chhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhh
Confidence            345666777777777777665 3320   112222 44444444444311  22444555555555555444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.89  E-value=0.00056  Score=56.26  Aligned_cols=65  Identities=40%  Similarity=0.484  Sum_probs=54.6

Q ss_pred             CcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455           93 SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        93 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      ..+..+++|+.|++..|.|... ..    .+..+++|++|++++|.|+...  .+..++.|+.|++++|.++
T Consensus        89 ~~l~~~~~l~~l~l~~n~i~~i-~~----~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~  153 (414)
T KOG0531|consen   89 NHLSKLKSLEALDLYDNKIEKI-EN----LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS  153 (414)
T ss_pred             cccccccceeeeeccccchhhc-cc----chhhhhcchheecccccccccc--chhhccchhhheeccCcch
Confidence            3477889999999999999884 32    3788999999999999998543  4667778999999999987

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.52  E-value=0.00069  Score=31.92  Aligned_cols=16  Identities=44%  Similarity=0.428  Sum_probs=8.6

Q ss_pred             CCEEeccCCccCccccC
Q 038455          101 LQSLDLSENWFTGIYEN  117 (170)
Q Consensus       101 L~~L~ls~N~l~~~~p~  117 (170)
                      |++|++++|+++ .+|.
T Consensus         2 L~~Ldls~n~l~-~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPS   17 (22)
T ss_dssp             ESEEEETSSEES-EEGT
T ss_pred             ccEEECCCCcCE-eCCh
Confidence            555555555555 3444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.41  E-value=0.0039  Score=46.38  Aligned_cols=60  Identities=25%  Similarity=0.312  Sum_probs=49.4

Q ss_pred             CCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455           99 EELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        99 ~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      .+...+||++|.+.. ++     .|..++.|.+|.+++|+|+..-|.--.-+++|..|.|.+|.|.
T Consensus        42 d~~d~iDLtdNdl~~-l~-----~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRK-LD-----NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             cccceecccccchhh-cc-----cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence            357789999999876 33     6888999999999999999655554455678999999999876

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.41  E-value=0.00051  Score=59.65  Aligned_cols=61  Identities=31%  Similarity=0.472  Sum_probs=46.3

Q ss_pred             CCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhh-ccCCCCCCEEeCCCCcCc
Q 038455           96 HPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY-LNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        96 ~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~-~~~l~~L~~L~L~~N~l~  164 (170)
                      .-++.|+.|+|++|+++..  +    .+..+++|++|||++|.+. .+|.. ...++ |..|.+.+|.++
T Consensus       184 qll~ale~LnLshNk~~~v--~----~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~  245 (1096)
T KOG1859|consen  184 QLLPALESLNLSHNKFTKV--D----NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT  245 (1096)
T ss_pred             HHHHHhhhhccchhhhhhh--H----HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHH
Confidence            3457788999999998764  2    6778899999999999988 56643 23343 888999988775

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.32  E-value=0.0027  Score=29.86  Aligned_cols=22  Identities=32%  Similarity=0.389  Sum_probs=17.9

Q ss_pred             CCCEEECCCCCCCCCChhhccCC
Q 038455          128 QLKMLNLGFNYVNDSILPYLNTL  150 (170)
Q Consensus       128 ~L~~L~Ls~N~l~g~~p~~~~~l  150 (170)
                      +|++|+|++|+|+ .+|+.|++|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            4789999999999 788877654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.16  E-value=0.0037  Score=47.91  Aligned_cols=63  Identities=33%  Similarity=0.373  Sum_probs=49.3

Q ss_pred             CCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCC--CCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455           96 HPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFN--YVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        96 ~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N--~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      ..+..|+.|.+.+..++.. -     .+..|++|+.|.++.|  ++.+.++.-...+++|++|++++|++.
T Consensus        40 d~~~~le~ls~~n~gltt~-~-----~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTL-T-----NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             ccccchhhhhhhccceeec-c-----cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            3455677777777666542 2     6788999999999999  667667666677799999999999986

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.08  E-value=0.0011  Score=52.08  Aligned_cols=86  Identities=22%  Similarity=0.230  Sum_probs=56.6

Q ss_pred             CeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCCh-h
Q 038455           67 RVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSIL-P  145 (170)
Q Consensus        67 ~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p-~  145 (170)
                      +|.++||.++. +..-  +++    ...+..|+.|+.|+++.|.+...|..    .-..+.+|+.|-|.+..+....- .
T Consensus        72 ~v~elDL~~N~-iSdW--seI----~~ile~lP~l~~LNls~N~L~s~I~~----lp~p~~nl~~lVLNgT~L~w~~~~s  140 (418)
T KOG2982|consen   72 DVKELDLTGNL-ISDW--SEI----GAILEQLPALTTLNLSCNSLSSDIKS----LPLPLKNLRVLVLNGTGLSWTQSTS  140 (418)
T ss_pred             hhhhhhcccch-hccH--HHH----HHHHhcCccceEeeccCCcCCCcccc----CcccccceEEEEEcCCCCChhhhhh
Confidence            56777777776 2211  111    23466788899999999988766543    22356788888888877765433 3


Q ss_pred             hccCCCCCCEEeCCCCcC
Q 038455          146 YLNTLTSLTTLNLSYNKI  163 (170)
Q Consensus       146 ~~~~l~~L~~L~L~~N~l  163 (170)
                      .+..++.++.|.++.|.+
T Consensus       141 ~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  141 SLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             hhhcchhhhhhhhccchh
Confidence            456777778888877743

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.02  E-value=0.0003  Score=54.71  Aligned_cols=61  Identities=23%  Similarity=0.243  Sum_probs=37.1

Q ss_pred             cCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhh-----ccCCCCCCEEe
Q 038455           94 LFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY-----LNTLTSLTTLN  157 (170)
Q Consensus        94 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~-----~~~l~~L~~L~  157 (170)
                      .|..+++|++|+|..|.|...-.   ++.+.++++|+.|+|..|...|.-+..     +.-|++|+.||
T Consensus        58 pl~rCtrLkElYLRkN~I~sldE---L~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   58 PLQRCTRLKELYLRKNCIESLDE---LEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hHHHHHHHHHHHHHhcccccHHH---HHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            35667777777777777655321   124566777777777777776655532     34456666554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.83  E-value=0.0042  Score=27.32  Aligned_cols=13  Identities=46%  Similarity=0.703  Sum_probs=5.4

Q ss_pred             CCCEEeCCCCcCc
Q 038455          152 SLTTLNLSYNKIE  164 (170)
Q Consensus       152 ~L~~L~L~~N~l~  164 (170)
                      +|+.|+|++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4555555555554

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.81  E-value=0.0046  Score=54.22  Aligned_cols=70  Identities=24%  Similarity=0.293  Sum_probs=36.1

Q ss_pred             CCCCCCCCEEeccCCccCccc--c-----------------CccccccCCCCCCCEEECCCCCCCCCC--hh----hccC
Q 038455           95 FHPFEELQSLDLSENWFTGIY--E-----------------NRAYDSFGSLKQLKMLNLGFNYVNDSI--LP----YLNT  149 (170)
Q Consensus        95 ~~~l~~L~~L~ls~N~l~~~~--p-----------------~~~~~~~~~l~~L~~L~Ls~N~l~g~~--p~----~~~~  149 (170)
                      ..++++|+.||+|+.+++...  .                 ...+..+.+|++|+.||+|..+.....  ..    .-..
T Consensus       169 c~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~  248 (699)
T KOG3665|consen  169 CASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV  248 (699)
T ss_pred             hhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence            456777888888877766320  0                 001113455666666666665543211  11    1233


Q ss_pred             CCCCCEEeCCCCcCc
Q 038455          150 LTSLTTLNLSYNKIE  164 (170)
Q Consensus       150 l~~L~~L~L~~N~l~  164 (170)
                      |++|+.||.|++.+.
T Consensus       249 LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  249 LPELRFLDCSGTDIN  263 (699)
T ss_pred             CccccEEecCCcchh
Confidence            566666666655544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=95.66  E-value=0.0041  Score=51.04  Aligned_cols=66  Identities=30%  Similarity=0.327  Sum_probs=43.7

Q ss_pred             CCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCC-Chhh-----ccCCCCCCEEeCCCCcCc
Q 038455           96 HPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDS-ILPY-----LNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        96 ~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~-~p~~-----~~~l~~L~~L~L~~N~l~  164 (170)
                      .-+..|+.|||++|++-.. +.  +...+.++.|..|+++.+.+... .|+.     ...+++|++|++..|++.
T Consensus       243 ~i~~~L~~LdLs~N~li~~-~~--~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  243 KILQTLQELDLSNNNLIDF-DQ--GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             hhhhHHhhccccCCccccc-cc--ccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            3456788888888877542 21  12567778888888888777532 3332     345678888888888774

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.48  E-value=0.012  Score=28.67  Aligned_cols=18  Identities=33%  Similarity=0.436  Sum_probs=10.0

Q ss_pred             CCCCEEeCCCCcCcccCCC
Q 038455          151 TSLTTLNLSYNKIEGSRTK  169 (170)
Q Consensus       151 ~~L~~L~L~~N~l~g~iP~  169 (170)
                      ++|+.|+|++|+++ .||+
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            45556666666555 4543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.48  E-value=0.012  Score=28.67  Aligned_cols=18  Identities=33%  Similarity=0.436  Sum_probs=10.0

Q ss_pred             CCCCEEeCCCCcCcccCCC
Q 038455          151 TSLTTLNLSYNKIEGSRTK  169 (170)
Q Consensus       151 ~~L~~L~L~~N~l~g~iP~  169 (170)
                      ++|+.|+|++|+++ .||+
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            45556666666555 4543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.26  E-value=0.00033  Score=53.16  Aligned_cols=85  Identities=16%  Similarity=0.027  Sum_probs=70.2

Q ss_pred             CCCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCC
Q 038455           64 TTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSI  143 (170)
Q Consensus        64 ~~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~  143 (170)
                      ...+|+.||++.+. +..+         ...|..++.|..|+++.|.+.. .|.    .++.+..+..+++..|.++ ..
T Consensus        40 ~~kr~tvld~~s~r-~vn~---------~~n~s~~t~~~rl~~sknq~~~-~~~----d~~q~~e~~~~~~~~n~~~-~~  103 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNR-LVNL---------GKNFSILTRLVRLDLSKNQIKF-LPK----DAKQQRETVNAASHKNNHS-QQ  103 (326)
T ss_pred             ccceeeeehhhhhH-HHhh---------ccchHHHHHHHHHhccHhhHhh-Chh----hHHHHHHHHHHHhhccchh-hC
Confidence            35688999998887 4333         2346778889999999999876 677    8888999999999999988 78


Q ss_pred             hhhccCCCCCCEEeCCCCcCc
Q 038455          144 LPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus       144 p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      |.+++..+.++.+++-.|.|.
T Consensus       104 p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  104 PKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             CccccccCCcchhhhccCcch
Confidence            999999999999999988875

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=94.94  E-value=0.015  Score=47.84  Aligned_cols=72  Identities=25%  Similarity=0.328  Sum_probs=49.3

Q ss_pred             CcCCCCCCCCEEeccCCccCccc-cCc-cccccCCCCCCCEEECCCCCCCC-CChhhccCCCCCCEEeCCCCcCc
Q 038455           93 SLFHPFEELQSLDLSENWFTGIY-ENR-AYDSFGSLKQLKMLNLGFNYVND-SILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        93 ~~~~~l~~L~~L~ls~N~l~~~~-p~~-~~~~~~~l~~L~~L~Ls~N~l~g-~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      ...+.|+.|+.|+++.+.+...- |+. -......+++|++|+++.|++.. ..-..+..+.+|+.|.+..|.|+
T Consensus       265 ~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  265 YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            34677888999999998886542 220 00013567899999999999952 22234566778888888888776

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=94.81  E-value=0.012  Score=47.13  Aligned_cols=71  Identities=28%  Similarity=0.263  Sum_probs=41.3

Q ss_pred             cCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh----hc-cCCCCCCEEeCCCCcCc
Q 038455           94 LFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP----YL-NTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        94 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~----~~-~~l~~L~~L~L~~N~l~  164 (170)
                      .|..+++|++|||..|.|+..-...--..+..+++|+.|+++++.+...-..    .+ ...+.|++|.+.+|.++
T Consensus       208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            4567778888888888776321100001455667777777777777533222    22 23566777777777665

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.31  E-value=0.028  Score=49.39  Aligned_cols=52  Identities=19%  Similarity=0.199  Sum_probs=34.4

Q ss_pred             CCCCCCCCEEeccCCccCccc--cCccccccCCCCCCCEEECCCCCCCCCChhh
Q 038455           95 FHPFEELQSLDLSENWFTGIY--ENRAYDSFGSLKQLKMLNLGFNYVNDSILPY  146 (170)
Q Consensus        95 ~~~l~~L~~L~ls~N~l~~~~--p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~  146 (170)
                      +-.|++|+.||+|........  .....+.-..|+.|+.||.|...+.+.+-+.
T Consensus       216 LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~  269 (699)
T KOG3665|consen  216 LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEE  269 (699)
T ss_pred             HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHH
Confidence            456899999999986554321  1101112345899999999998887655443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=93.29  E-value=0.063  Score=42.01  Aligned_cols=71  Identities=25%  Similarity=0.231  Sum_probs=44.9

Q ss_pred             cCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCC----CChhhc---------cCCCCCCEEeCCC
Q 038455           94 LFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND----SILPYL---------NTLTSLTTLNLSY  160 (170)
Q Consensus        94 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g----~~p~~~---------~~l~~L~~L~L~~  160 (170)
                      .+-++++|+..+||.|-|....|+.-...++.-+.|.+|.+++|.+.-    .+...+         ..-+.|+++....
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            355678888888888888766554111135566778888888887642    222111         2346677777777


Q ss_pred             CcCc
Q 038455          161 NKIE  164 (170)
Q Consensus       161 N~l~  164 (170)
                      |++.
T Consensus       167 NRle  170 (388)
T COG5238         167 NRLE  170 (388)
T ss_pred             chhc
Confidence            7764

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.24  E-value=0.11  Score=25.11  Aligned_cols=14  Identities=29%  Similarity=0.408  Sum_probs=8.7

Q ss_pred             CCCCEEECCCCCCC
Q 038455          127 KQLKMLNLGFNYVN  140 (170)
Q Consensus       127 ~~L~~L~Ls~N~l~  140 (170)
                      ++|+.|+|++|+|.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45666666666666

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.24  E-value=0.11  Score=25.11  Aligned_cols=14  Identities=29%  Similarity=0.408  Sum_probs=8.7

Q ss_pred             CCCCEEECCCCCCC
Q 038455          127 KQLKMLNLGFNYVN  140 (170)
Q Consensus       127 ~~L~~L~Ls~N~l~  140 (170)
                      ++|+.|+|++|+|.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45666666666666

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.79  E-value=0.043  Score=43.45  Aligned_cols=66  Identities=24%  Similarity=0.278  Sum_probs=47.7

Q ss_pred             CCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455           97 PFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        97 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      ..+.++.+||.+|.|+..-.  -+..+.+++.|+.|+|+.|.++..|-..-..+.+|++|-|.+..+.
T Consensus        69 ~~~~v~elDL~~N~iSdWse--I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~  134 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSE--IGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS  134 (418)
T ss_pred             HhhhhhhhhcccchhccHHH--HHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence            45789999999999975321  1125778999999999999998543322245678899988776553

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.56  E-value=0.0017  Score=49.43  Aligned_cols=72  Identities=19%  Similarity=0.230  Sum_probs=59.1

Q ss_pred             CCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCCC
Q 038455           91 NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTK  169 (170)
Q Consensus        91 ~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~  169 (170)
                      +.-.+..+...+.||++.|++... -.    .|..++.|..|+++.|.+. ..|..++++..+..+++..|..+ ..|.
T Consensus        34 ~v~ei~~~kr~tvld~~s~r~vn~-~~----n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~  105 (326)
T KOG0473|consen   34 PVREIASFKRVTVLDLSSNRLVNL-GK----NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK  105 (326)
T ss_pred             chhhhhccceeeeehhhhhHHHhh-cc----chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc
Confidence            344566777889999999998753 33    6888999999999999998 78999999999999999988876 4553

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.07  E-value=0.0064  Score=47.50  Aligned_cols=69  Identities=30%  Similarity=0.323  Sum_probs=57.0

Q ss_pred             CcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCCh--hhccCCCCCCEEeCCCCcCcccCC
Q 038455           93 SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSIL--PYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus        93 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p--~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      +....++.|++|.|+-|+|+..-      .+..+++|+.|+|..|.|.. +-  ..+.++++|++|-|..|...|+-+
T Consensus        35 sic~kMp~lEVLsLSvNkIssL~------pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LWL~ENPCc~~ag  105 (388)
T KOG2123|consen   35 SICEKMPLLEVLSLSVNKISSLA------PLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLWLDENPCCGEAG  105 (388)
T ss_pred             HHHHhcccceeEEeeccccccch------hHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHhhccCCcccccc
Confidence            34567889999999999998743      47889999999999999973 33  367899999999999999887654

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=92.07  E-value=0.11  Score=25.47  Aligned_cols=16  Identities=44%  Similarity=0.515  Sum_probs=8.7

Q ss_pred             CCCEEeCCCCcCcccCC
Q 038455          152 SLTTLNLSYNKIEGSRT  168 (170)
Q Consensus       152 ~L~~L~L~~N~l~g~iP  168 (170)
                      +|+.|++++|+++ ++|
T Consensus         3 ~L~~L~vs~N~Lt-~LP   18 (26)
T smart00364        3 SLKELNVSNNQLT-SLP   18 (26)
T ss_pred             ccceeecCCCccc-cCc
Confidence            4555555555555 444

>PRK15386 type III secretion protein GogB; Provisional

Probab=91.19  E-value=0.46  Score=39.33  Aligned_cols=10  Identities=20%  Similarity=0.318  Sum_probs=5.8

Q ss_pred             CCCEEeccCC
Q 038455          100 ELQSLDLSEN  109 (170)
Q Consensus       100 ~L~~L~ls~N  109 (170)
                      +|++|++++|
T Consensus        95 nLe~L~Ls~C  104 (426)
T PRK15386         95 GLEKLTVCHC  104 (426)
T ss_pred             hhhheEccCc
Confidence            4556666555

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=90.99  E-value=0.41  Score=32.11  Aligned_cols=63  Identities=17%  Similarity=0.293  Sum_probs=26.7

Q ss_pred             CCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCC
Q 038455           91 NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY  160 (170)
Q Consensus        91 ~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~  160 (170)
                      ....|..+..|+.+.+.. .+......    .|..++.|+.+.+..+ +.......|.++ .|+.+.+..
T Consensus        50 ~~~~F~~~~~l~~i~~~~-~~~~i~~~----~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   50 GDNAFSNCKSLESITFPN-NLKSIGDN----AFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             -TTTTTT-TT-EEEEETS-TT-EE-TT----TTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             ceeeeecccccccccccc-cccccccc----cccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            344556665666666654 33322222    4555666666666554 332222345555 666666553

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=89.19  E-value=0.72  Score=30.87  Aligned_cols=67  Identities=19%  Similarity=0.289  Sum_probs=43.5

Q ss_pred             CCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCC
Q 038455           89 FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYN  161 (170)
Q Consensus        89 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N  161 (170)
                      .+....|..+++|+.+.+..+ +......    .|..++.|+.+.+.. .+.......|..+++|+.+.+..+
T Consensus        25 ~I~~~~F~~~~~l~~i~~~~~-~~~i~~~----~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~   91 (129)
T PF13306_consen   25 KIGENAFSNCTSLKSINFPNN-LTSIGDN----AFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN   91 (129)
T ss_dssp             EE-TTTTTT-TT-SEEEESST-TSCE-TT----TTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT
T ss_pred             EeChhhccccccccccccccc-cccccee----eeecccccccccccc-cccccccccccccccccccccCcc
Confidence            345677889989999999875 6654344    788888899999976 443233456778999999998765

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=89.03  E-value=0.2  Score=40.33  Aligned_cols=67  Identities=19%  Similarity=0.191  Sum_probs=38.6

Q ss_pred             CCCCCCEEeccCCccCccccCccc-cccCCCCCCCEEECCCCCCCCC----ChhhccCCCCCCEEeCCCCcCc
Q 038455           97 PFEELQSLDLSENWFTGIYENRAY-DSFGSLKQLKMLNLGFNYVNDS----ILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        97 ~l~~L~~L~ls~N~l~~~~p~~~~-~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      .-++|+++..+.|++... +.... ..|...+.|+.+.++.|.|...    +-..|..+++|++|||..|.|+
T Consensus       155 ~~~~Lrv~i~~rNrlen~-ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENG-GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             CCcceEEEEeeccccccc-cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            345677777777776432 11000 1345556677777777766321    2234666777777777777665

>PRK15386 type III secretion protein GogB; Provisional

Probab=88.88  E-value=0.6  Score=38.69  Aligned_cols=76  Identities=11%  Similarity=0.124  Sum_probs=46.4

Q ss_pred             CeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCC-ccCccccCccccccCCCCCCCEEECCCC-CCCCCCh
Q 038455           67 RVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSEN-WFTGIYENRAYDSFGSLKQLKMLNLGFN-YVNDSIL  144 (170)
Q Consensus        67 ~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N-~l~~~~p~~~~~~~~~l~~L~~L~Ls~N-~l~g~~p  144 (170)
                      ....|+++++. |+.+         | .+  ..+|+.|.++++ .+ ..+|.    .+  .++|+.|++++| .+. .+|
T Consensus        53 ~l~~L~Is~c~-L~sL---------P-~L--P~sLtsL~Lsnc~nL-tsLP~----~L--P~nLe~L~Ls~Cs~L~-sLP  111 (426)
T PRK15386         53 ASGRLYIKDCD-IESL---------P-VL--PNELTEITIENCNNL-TTLPG----SI--PEGLEKLTVCHCPEIS-GLP  111 (426)
T ss_pred             CCCEEEeCCCC-Cccc---------C-CC--CCCCcEEEccCCCCc-ccCCc----hh--hhhhhheEccCccccc-ccc
Confidence            46677777775 4444         1 11  235999999874 44 33565    44  368999999988 554 566


Q ss_pred             hhccCCCCCCEEeCCCCcCc--ccCCC
Q 038455          145 PYLNTLTSLTTLNLSYNKIE--GSRTK  169 (170)
Q Consensus       145 ~~~~~l~~L~~L~L~~N~l~--g~iP~  169 (170)
                      .      +|+.|+++.|...  +.+|+
T Consensus       112 ~------sLe~L~L~~n~~~~L~~LPs  132 (426)
T PRK15386        112 E------SVRSLEIKGSATDSIKNVPN  132 (426)
T ss_pred             c------ccceEEeCCCCCcccccCcc
Confidence            4      3556666655431  35554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=88.17  E-value=0.28  Score=23.10  Aligned_cols=16  Identities=44%  Similarity=0.515  Sum_probs=9.2

Q ss_pred             CCCCCEEeCCCCcCcc
Q 038455          150 LTSLTTLNLSYNKIEG  165 (170)
Q Consensus       150 l~~L~~L~L~~N~l~g  165 (170)
                      +++|+.|+|++|+|+.
T Consensus         1 ~~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    1 NPNLETLDLSNNQITD   16 (24)
T ss_dssp             -TT-SEEE-TSSBEHH
T ss_pred             CCCCCEEEccCCcCCH
Confidence            3567777887777653

...

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=87.29  E-value=0.58  Score=22.85  Aligned_cols=15  Identities=33%  Similarity=0.481  Sum_probs=9.9

Q ss_pred             CCCCCEEECCCCCCC
Q 038455          126 LKQLKMLNLGFNYVN  140 (170)
Q Consensus       126 l~~L~~L~Ls~N~l~  140 (170)
                      +++|+.|+++.|+|.
T Consensus         1 L~~L~~L~L~~NkI~   15 (26)
T smart00365        1 LTNLEELDLSQNKIK   15 (26)
T ss_pred             CCccCEEECCCCccc
Confidence            356677777777765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=86.01  E-value=0.34  Score=38.53  Aligned_cols=59  Identities=27%  Similarity=0.219  Sum_probs=42.9

Q ss_pred             CCCCCCCEEeccCCcc-CccccCccccccCCCCCCCEEECCCCCCCCCChh---hccCCCCCCEEeCCC
Q 038455           96 HPFEELQSLDLSENWF-TGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP---YLNTLTSLTTLNLSY  160 (170)
Q Consensus        96 ~~l~~L~~L~ls~N~l-~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~---~~~~l~~L~~L~L~~  160 (170)
                      ..+++|..|||+.|.. +...-    .+|.+++.|++|.++.+..  .+|.   .+...+.|.+|++.+
T Consensus       310 ~rcp~l~~LDLSD~v~l~~~~~----~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVMLKNDCF----QEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             HhCCceeeeccccccccCchHH----HHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence            4578999999998754 32222    2788899999999887763  4565   367788899998764

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=82.42  E-value=1.2  Score=21.94  Aligned_cols=14  Identities=50%  Similarity=0.619  Sum_probs=9.4

Q ss_pred             CCCCEEeCCCCcCc
Q 038455          151 TSLTTLNLSYNKIE  164 (170)
Q Consensus       151 ~~L~~L~L~~N~l~  164 (170)
                      ++|++|+|++|.|.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            45677777777764

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.72  E-value=0.2  Score=37.34  Aligned_cols=34  Identities=29%  Similarity=0.273  Sum_probs=20.8

Q ss_pred             CCCCCEEECCCC-CCCCCChhhccCCCCCCEEeCC
Q 038455          126 LKQLKMLNLGFN-YVNDSILPYLNTLTSLTTLNLS  159 (170)
Q Consensus       126 l~~L~~L~Ls~N-~l~g~~p~~~~~l~~L~~L~L~  159 (170)
                      .++|+.|+|+.| +|+..--..+..+++|+.|.+.
T Consensus       150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~  184 (221)
T KOG3864|consen  150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY  184 (221)
T ss_pred             ccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence            366777777755 4554444456666666666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	170
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 97.3 bits (243), Expect = 3e-24
 Identities = 42/176 (23%), Positives = 64/176 (36%), Gaps = 35/176 (19%)

Query: 9   ACLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVMCNATTRRV 68
             L  E   L++ K           D  +LP W         + C  ++GV C     +V
Sbjct: 8   QSLYREIHQLISFKDVLP-------DKNLLPDWSSN-----KNPCT-FDGVTCR--DDKV 52

Query: 69  MQLSLNYT----------------RRLKYYDRTSASFM-NMSLFHPFEELQSLDLSENWF 111
             + L+                    L+    +++    ++S F     L SLDLS N  
Sbjct: 53  TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSL 112

Query: 112 TGIYENRAYDSFGSLKQLKMLNLGFNYVNDSI-LPYLNTLTSLTTLNLSYNKIEGS 166
           +G        S GS   LK LN+  N ++    +     L SL  L+LS N I G+
Sbjct: 113 SG--PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.5 bits (145), Expect = 4e-11
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 101 LQSLDLSENWFTG-IYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLS 159
           L+ LD+S N F+  I         G    L+ L++  N ++      ++T T L  LN+S
Sbjct: 202 LEFLDVSSNNFSTGI------PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255

Query: 160 YNKIEGS 166
            N+  G 
Sbjct: 256 SNQFVGP 262

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 101 LQSLDLSENWFTG-IYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLS 159
           L  L+L  N  +G I +       G L+ L +L+L  N ++  I   ++ LT LT ++LS
Sbjct: 658 LFILNLGHNDISGSIPD-----EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712

Query: 160 YNKIEG 165
            N + G
Sbjct: 713 NNNLSG 718

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 101 LQSLDLSENWFTG-IYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLS 159
           L+ L +S N  +G +              L+ L++  N  +  I P+L   ++L  L++S
Sbjct: 180 LKHLAISGNKISGDV-------DVSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDIS 231

Query: 160 YNKIEGS 166
            NK+ G 
Sbjct: 232 GNKLSGD 238

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.8 bits (138), Expect = 3e-10
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP-YLNTLT 151
            L    + L  LDLS N F G         FGS   L+ L L  N  +  +    L  + 
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVPP----FFGSCSLLESLALSSNNFSGELPMDTLLKMR 343

Query: 152 SLTTLNLSYNKIEGS 166
            L  L+LS+N+  G 
Sbjct: 344 GLKVLDLSFNEFSGE 358

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.5 bits (132), Expect = 2e-09
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 97  PFEELQSLDLSENWFTG-IYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTT 155
           P   LQ L L  N FTG I       +  +  +L  L+L FNY++ +I   L +L+ L  
Sbjct: 392 PKNTLQELYLQNNGFTGKIP-----PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446

Query: 156 LNLSYNKIEGS 166
           L L  N +EG 
Sbjct: 447 LKLWLNMLEGE 457

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.5 bits (132), Expect = 2e-09
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           LQ L L+EN FTG   +      G+   L  L+L  N+   ++ P+  + + L +L LS 
Sbjct: 271 LQYLSLAENKFTGEIPD---FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327

Query: 161 NKIEGS 166
           N   G 
Sbjct: 328 NNFSGE 333

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.5 bits (132), Expect = 2e-09
 Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 12/82 (14%)

Query: 86  SASFMNMSLFHPFEELQSLDLSENWFTG-IYENRAYDSFGSLKQLKMLNLGFNYVNDSIL 144
             +  N S      EL SL LS N+ +G I       S GSL +L+ L L  N +   I 
Sbjct: 411 PPTLSNCS------ELVSLHLSFNYLSGTIPS-----SLGSLSKLRDLKLWLNMLEGEIP 459

Query: 145 PYLNTLTSLTTLNLSYNKIEGS 166
             L  + +L TL L +N + G 
Sbjct: 460 QELMYVKTLETLILDFNDLTGE 481

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.8 bits (130), Expect = 4e-09
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L+ LDLS N  +G      +       +LK L +  N ++  +        +L  L++S 
Sbjct: 153 LEVLDLSANSISGANVV-GWVLSDGCGELKHLAISGNKISGDV-DVSR-CVNLEFLDVSS 209

Query: 161 NKIEGS 166
           N     
Sbjct: 210 NNFSTG 215

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.6 bits (127), Expect = 8e-09
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 12/81 (14%)

Query: 87  ASFMNMSLFHPFEELQSLDLSENWFTG-IYENRAYDSFGSLKQLKMLNLGFNYVNDSILP 145
              M +        L++L L  N  TG I          +   L  ++L  N +   I  
Sbjct: 460 QELMYVK------TLETLILDFNDLTGEIPS-----GLSNCTNLNWISLSNNRLTGEIPK 508

Query: 146 YLNTLTSLTTLNLSYNKIEGS 166
           ++  L +L  L LS N   G+
Sbjct: 509 WIGRLENLAILKLSNNSFSGN 529

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYL-NTLTSLTTLNLS 159
           L+SL LS N F+G       D+   ++ LK+L+L FN  +  +   L N   SL TL+LS
Sbjct: 320 LESLALSSNNFSGELPM---DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376

Query: 160 YNKIEGS 166
            N   G 
Sbjct: 377 SNNFSGP 383

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 6/67 (8%)

Query: 101 LQSLDLSENWFTG-IYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLS 159
           +  LD+S N  +G I +       GS+  L +LNLG N ++ SI   +  L  L  L+LS
Sbjct: 634 MMFLDMSYNMLSGYIPK-----EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688

Query: 160 YNKIEGS 166
            NK++G 
Sbjct: 689 SNKLDGR 695

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           LQ LD+S N  +G +      +  +  +LK+LN+  N     I P L  L SL  L+L+ 
Sbjct: 225 LQHLDISGNKLSGDFS----RAISTCTELKLLNISSNQFVGPI-PPLP-LKSLQYLSLAE 278

Query: 161 NKIEGS 166
           NK  G 
Sbjct: 279 NKFTGE 284

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.7 bits (122), Expect = 4e-08
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 101 LQSLDLSENWFTG-IYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLS 159
           L  + LS N  TG I +       G L+ L +L L  N  + +I   L    SL  L+L+
Sbjct: 492 LNWISLSNNRLTGEIPK-----WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546

Query: 160 YNKIEGS 166
            N   G+
Sbjct: 547 TNLFNGT 553

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 4/70 (5%)

Query: 97  PFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTL 156
             ++      +   F GI      +    L      N+          P  +   S+  L
Sbjct: 582 GMKKECHGAGNLLEFQGIR----SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637

Query: 157 NLSYNKIEGS 166
           ++SYN + G 
Sbjct: 638 DMSYNMLSGY 647

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 7/69 (10%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLK-QLKMLNLGFNYVNDSILPYL--NTLTSLTTLN 157
           L+ LDLS N F+G       +S  +L   L  L+L  N  +  ILP L  N   +L  L 
Sbjct: 345 LKVLDLSFNEFSG----ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400

Query: 158 LSYNKIEGS 166
           L  N   G 
Sbjct: 401 LQNNGFTGK 409

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 82.6 bits (205), Expect = 1e-19
 Identities = 37/185 (20%), Positives = 69/185 (37%), Gaps = 51/185 (27%)

Query: 10  CLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCD-AWEGVMCNATTR-- 66
           C   ++ ALL IK           +   L SW+       +DCC+  W GV+C+  T+  
Sbjct: 3   CNPQDKQALLQIKKDLG-------NPTTLSSWLPT-----TDCCNRTWLGVLCDTDTQTY 50

Query: 67  RVMQLSLNYTR---------------RLKYYDRTS---------ASFMNMSLFHPFEELQ 102
           RV  L L+                   L +               +   ++      +L 
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT------QLH 104

Query: 103 SLDLSENWFTG-IYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYN 161
            L ++    +G I      D    +K L  L+  +N ++ ++ P +++L +L  +    N
Sbjct: 105 YLYITHTNVSGAIP-----DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159

Query: 162 KIEGS 166
           +I G+
Sbjct: 160 RISGA 164

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 56.4 bits (137), Expect = 3e-10
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 101 LQSLDLSENWFTG-IYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLS 159
            Q + L++N     +         G  K L  L+L  N +  ++   L  L  L +LN+S
Sbjct: 223 TQKIHLAKNSLAFDL------GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 160 YNKIEGS 166
           +N + G 
Sbjct: 277 FNNLCGE 283

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 56.0 bits (136), Expect = 4e-10
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L  +DLS N   G     A   FGS K  + ++L  N +   +   +    +L  L+L  
Sbjct: 199 LAFVDLSRNMLEG----DASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRN 253

Query: 161 NKIEGS 166
           N+I G+
Sbjct: 254 NRIYGT 259

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 7/67 (10%)

Query: 101 LQSLDLSENWFTG-IYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLS 159
             S+ +S N  TG I       +F +L  L  ++L  N +         +  +   ++L+
Sbjct: 176 FTSMTISRNRLTGKIP-----PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 160 YNKIEGS 166
            N +   
Sbjct: 230 KNSLAFD 236

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.3 bits (152), Expect = 4e-12
 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 4/78 (5%)

Query: 88  SFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYL 147
           S ++   F     L  L L  N    I  N     F   K L  L+L  N ++ + L   
Sbjct: 86  SQLSDKTFAFCTNLTELHLMSNSIQKIKNN----PFVKQKNLITLDLSHNGLSSTKLGTQ 141

Query: 148 NTLTSLTTLNLSYNKIEG 165
             L +L  L LS NKI+ 
Sbjct: 142 VQLENLQELLLSNNKIQA 159

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.6 bits (150), Expect = 8e-12
 Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 7/99 (7%)

Query: 67  RVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSL 126
            ++ L  N    L    + +     +        L  L+L  N F  I      + F  L
Sbjct: 507 EILDLQHN---NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI----PVEVFKDL 559

Query: 127 KQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165
            +LK+++LG N +N       N   SL +LNL  N I  
Sbjct: 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 12/110 (10%)

Query: 57  EGVMCNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYE 116
             +       + + LS +          T+ +F++++       L  L+L++N  + I  
Sbjct: 346 SNMFTGLINLKYLSLSNS---FTSLRTLTNETFVSLAH----SPLHILNLTKNKISKIES 398

Query: 117 NRAYDSFGSLKQLKMLNLGFNYVNDSILPY-LNTLTSLTTLNLSYNKIEG 165
           +    +F  L  L++L+LG N +   +       L ++  + LSYNK   
Sbjct: 399 D----AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.9 bits (143), Expect = 6e-11
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
           F  + +L SLD+  N  + +      +    L  LK+LNL  N ++          T+LT
Sbjct: 45  FTRYSQLTSLDVGFNTISKLEP----ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100

Query: 155 TLNLSYNKIEG 165
            L+L  N I+ 
Sbjct: 101 ELHLMSNSIQK 111

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.5 bits (137), Expect = 4e-10
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTS 152
           + F     LQ L L       +  + +   F  L+ L +L+L  N + +     L  L  
Sbjct: 448 NSFALVPSLQRLMLRRVALKNV--DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 505

Query: 153 LTTLNLSYNKIE 164
           L  L+L +N + 
Sbjct: 506 LEILDLQHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 7e-10
 Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 3/71 (4%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
           F     L+ LDL  N             +  L+ +  + L +N            + SL 
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTG---QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457

Query: 155 TLNLSYNKIEG 165
            L L    ++ 
Sbjct: 458 RLMLRRVALKN 468

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 8e-10
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 90  MNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVN--DSILPYL 147
           +    +   E +  + LS N +  +  N    SF  +  L+ L L    +   DS     
Sbjct: 421 LTGQEWRGLENIFEIYLSYNKYLQLTRN----SFALVPSLQRLMLRRVALKNVDSSPSPF 476

Query: 148 NTLTSLTTLNLSYNKIEG 165
             L +LT L+LS N I  
Sbjct: 477 QPLRNLTILDLSNNNIAN 494

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.4 bits (134), Expect = 8e-10
 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 8/100 (8%)

Query: 70  QLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQL 129
            L+L  +   +     S   ++   F   + L+ L++ +N   GI  N     F  L  L
Sbjct: 300 YLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN----MFTGLINL 355

Query: 130 KMLNLGFNYVNDSILPYLN----TLTSLTTLNLSYNKIEG 165
           K L+L  ++ +   L          + L  LNL+ NKI  
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK 395

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.4 bits (134), Expect = 9e-10
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLN 157
              +  L+L+ N    +       +F    QL  L++GFN ++         L  L  LN
Sbjct: 24  PTNITVLNLTHNQLRRLPAA----NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN 79

Query: 158 LSYNKIEG 165
           L +N++  
Sbjct: 80  LQHNELSQ 87

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 12/83 (14%)

Query: 91  NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNY--------VNDS 142
           + S F P   L  LDLS N    I      D    L++L++L+L  N             
Sbjct: 472 SPSPFQPLRNLTILDLSNNNIANI----NDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527

Query: 143 ILPYLNTLTSLTTLNLSYNKIEG 165
            + +L  L+ L  LNL  N  + 
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDE 550

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 8/81 (9%)

Query: 86  SASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP 145
           + +F+ +   +    L  LDLS N    +      DSF  L QL+   L +N +      
Sbjct: 239 NTTFLGLKWTN----LTMLDLSYNNLNVVGN----DSFAWLPQLEYFFLEYNNIQHLFSH 290

Query: 146 YLNTLTSLTTLNLSYNKIEGS 166
            L+ L ++  LNL  +  + S
Sbjct: 291 SLHGLFNVRYLNLKRSFTKQS 311

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.7 bits (127), Expect = 8e-09
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 13/82 (15%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSI----LPYL- 147
             F    +L+   L  N    ++ +    S   L  ++ LNL  ++   SI    LP + 
Sbjct: 266 DSFAWLPQLEYFFLEYNNIQHLFSH----SLHGLFNVRYLNLKRSFTKQSISLASLPKID 321

Query: 148 ----NTLTSLTTLNLSYNKIEG 165
                 L  L  LN+  N I G
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPG 343

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNY---VNDSILPYLNT 149
            +F    EL+ +DL  N    +        F +   LK LNL  N    V   +      
Sbjct: 554 EVFKDLFELKIIDLGLNNLNTLPA----SVFNNQVSLKSLNLQKNLITSVEKKVFG--PA 607

Query: 150 LTSLTTLNLSYNKIEGS 166
             +LT L++ +N  + +
Sbjct: 608 FRNLTELDMRFNPFDCT 624

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 16/74 (21%), Positives = 29/74 (39%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTS 152
           ++F     L+ L LS ++ +            +   L +LNL  N ++       + L  
Sbjct: 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406

Query: 153 LTTLNLSYNKIEGS 166
           L  L+L  N+I   
Sbjct: 407 LEVLDLGLNEIGQE 420

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 100 ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSI---LPYLNTLTSLTTL 156
            L+ L+LS N             F ++ +L  L L    +  S+   L      TS+  L
Sbjct: 172 SLKKLELSSNQIKEFSPG----CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227

Query: 157 NLSYNKIEG 165
           +LS +++  
Sbjct: 228 SLSNSQLST 236

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 100 ELQSLDLSENWFTGIYENRAYDSFGSLK--QLKMLNLGFNYVNDSILPYLNTLTSLTTLN 157
            +++L LS +  +         +F  LK   L ML+L +N +N         L  L    
Sbjct: 223 SIRNLSLSNSQLSTTSN----TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278

Query: 158 LSYNKIEG 165
           L YN I+ 
Sbjct: 279 LEYNNIQH 286

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 6e-08
 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 2/79 (2%)

Query: 88  SFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYL 147
           S   +      E LQ L LS N    +          +   LK L L  N + +      
Sbjct: 134 SSTKLGTQVQLENLQELLLSNNKIQALKSE--ELDIFANSSLKKLELSSNQIKEFSPGCF 191

Query: 148 NTLTSLTTLNLSYNKIEGS 166
           + +  L  L L+  ++  S
Sbjct: 192 HAIGRLFGLFLNNVQLGPS 210

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 5/77 (6%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRA-----YDSFGSLKQLKMLNLGFNYVNDSILPYLNT 149
            H    ++ L+L  ++        +       SF  LK L+ LN+  N +          
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351

Query: 150 LTSLTTLNLSYNKIEGS 166
           L +L  L+LS +     
Sbjct: 352 LINLKYLSLSNSFTSLR 368

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 7/66 (10%)

Query: 100 ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLS 159
             +  D S    T +              + +LNL  N +           + LT+L++ 
Sbjct: 5   SHEVADCSHLKLTQV-------PDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57

Query: 160 YNKIEG 165
           +N I  
Sbjct: 58  FNTISK 63

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.6 bits (150), Expect = 6e-12
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 88  SFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP-Y 146
              +   F     L++L   E     +         G L  LK LN+  N+++   LP Y
Sbjct: 93  QSFSPGSFSGLTSLENLVAVETKLASLESF----PIGQLITLKKLNVAHNFIHSCKLPAY 148

Query: 147 LNTLTSLTTLNLSYNKIEG 165
            + LT+L  ++LSYN I+ 
Sbjct: 149 FSNLTNLVHVDLSYNYIQT 167

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.2 bits (136), Expect = 4e-10
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 4/76 (5%)

Query: 88  SFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYL 147
             ++  +F     LQ L++S N    +        +  L  L  L+  FN +  S     
Sbjct: 486 EQISWGVFDTLHRLQLLNMSHNNLLFL----DSSHYNQLYSLSTLDCSFNRIETSKGILQ 541

Query: 148 NTLTSLTTLNLSYNKI 163
           +   SL   NL+ N +
Sbjct: 542 HFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.2 bits (136), Expect = 5e-10
 Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
           F  F ELQ LDLS      I +     ++  L  L  L L  N +        + LTSL 
Sbjct: 52  FSNFSELQWLDLSRCEIETIED----KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107

Query: 155 TLNLSYNKIEG 165
            L     K+  
Sbjct: 108 NLVAVETKLAS 118

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.8 bits (135), Expect = 6e-10
 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 4/71 (5%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
           +H    L +L L+ N            SF  L  L+ L      +       +  L +L 
Sbjct: 76  WHGLHHLSNLILTGNPIQSFSP----GSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 155 TLNLSYNKIEG 165
            LN+++N I  
Sbjct: 132 KLNVAHNFIHS 142

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTS 152
           ++F     L  LDLS+     I        F +L +L++LN+  N +      + N L S
Sbjct: 467 NVFANTTNLTFLDLSKCQLEQISW----GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522

Query: 153 LTTLNLSYNKIEG 165
           L+TL+ S+N+IE 
Sbjct: 523 LSTLDCSFNRIET 535

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLN 157
               +++DLS N    +       SF +  +L+ L+L    +        + L  L+ L 
Sbjct: 31  PSSTKNIDLSFNPLKILKSY----SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI 86

Query: 158 LSYNKIEG 165
           L+ N I+ 
Sbjct: 87  LTGNPIQS 94

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.1 bits (128), Expect = 6e-09
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTS 152
           + F   EELQ LD   +    + E     +F SL++L  L++ +             LTS
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEF---SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 153 LTTLNLSYNKIEGS 166
           L TL ++ N  + +
Sbjct: 450 LNTLKMAGNSFKDN 463

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTS 152
            +F     L +L ++ N F     +   + F +   L  L+L    +        +TL  
Sbjct: 442 GIFLGLTSLNTLKMAGNSFKDNTLS---NVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498

Query: 153 LTTLNLSYNKIEG 165
           L  LN+S+N +  
Sbjct: 499 LQLLNMSHNNLLF 511

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 8e-07
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 10/79 (12%)

Query: 88  SFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY- 146
           S+ ++        L+ LDLS N    +       +F  L++L+ L+   + +        
Sbjct: 369 SYSDLGTNS----LRHLDLSFNGAIIMSA-----NFMGLEELQHLDFQHSTLKRVTEFSA 419

Query: 147 LNTLTSLTTLNLSYNKIEG 165
             +L  L  L++SY   + 
Sbjct: 420 FLSLEKLLYLDISYTNTKI 438

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 8e-07
 Identities = 18/65 (27%), Positives = 22/65 (33%), Gaps = 9/65 (13%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
            QSL +                   L  LK L L  N    SI      L SL+ L+LS 
Sbjct: 309 WQSLSIIRCQLKQF-------PTLDLPFLKSLTLTMN--KGSISFKKVALPSLSYLDLSR 359

Query: 161 NKIEG 165
           N +  
Sbjct: 360 NALSF 364

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 8/72 (11%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVN--DSILPYLNTLTS 152
                 L+SL L+ N  +  +         +L  L  L+L  N ++             S
Sbjct: 324 TLDLPFLKSLTLTMNKGSISF------KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377

Query: 153 LTTLNLSYNKIE 164
           L  L+LS+N   
Sbjct: 378 LRHLDLSFNGAI 389

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 9/83 (10%)

Query: 88  SFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYL 147
              ++  FH    + ++ L+      +      +      + + L++    +     P L
Sbjct: 274 FSDDIVKFHCLANVSAMSLAGVSIKYL------EDVPKHFKWQSLSIIRCQLKQ--FPTL 325

Query: 148 NTLTSLTTLNLSYNKIEGSRTKQ 170
           + L  L +L L+ NK   S  K 
Sbjct: 326 D-LPFLKSLTLTMNKGSISFKKV 347

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 10/76 (13%), Positives = 23/76 (30%), Gaps = 4/76 (5%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYD--SFGSLKQLKMLNLGFNYVNDSILPY--LN 148
           +       L    L    F        ++      L  + +      Y ND        +
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282

Query: 149 TLTSLTTLNLSYNKIE 164
            L +++ ++L+   I+
Sbjct: 283 CLANVSAMSLAGVSIK 298

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 9/81 (11%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKM----LNLGFNYVNDSILPYLN 148
           + F     L  +DLS N+   I  N        L++       L++  N ++  I     
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTITVN----DLQFLRENPQVNLSLDMSLNPID-FIQDQAF 201

Query: 149 TLTSLTTLNLSYNKIEGSRTK 169
               L  L L  N    +  K
Sbjct: 202 QGIKLHELTLRGNFNSSNIMK 222

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.6 bits (150), Expect = 6e-12
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY-LNTLT 151
           S+F     L  LD+S       +       F  L  L++L +  N   ++ LP     L 
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFN----GIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470

Query: 152 SLTTLNLSYNKIEG 165
           +LT L+LS  ++E 
Sbjct: 471 NLTFLDLSQCQLEQ 484

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.8 bits (148), Expect = 1e-11
 Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 4/72 (5%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
           F  F ELQ LDLS      I +     ++ SL  L  L L  N +    L   + L+SL 
Sbjct: 48  FFSFPELQVLDLSRCEIQTIED----GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 155 TLNLSYNKIEGS 166
            L      +   
Sbjct: 104 KLVAVETNLASL 115

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP-YLNTLT 151
             F     LQ L   E     +         G LK LK LN+  N +    LP Y + LT
Sbjct: 94  GAFSGLSSLQKLVAVETNLASLENF----PIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 152 SLTTLNLSYNKIEGS 166
           +L  L+LS NKI+  
Sbjct: 150 NLEHLDLSSNKIQSI 164

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
            ++LDLS N    +       SF S  +L++L+L    +         +L+ L+TL L+ 
Sbjct: 30  TKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 161 NKIEGS 166
           N I+  
Sbjct: 86  NPIQSL 91

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTS 152
            +F     L  LDLS+     +    +  +F SL  L++LN+  N            L S
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQL----SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 519

Query: 153 LTTLNLSYNKIEGS 166
           L  L+ S N I  S
Sbjct: 520 LQVLDYSLNHIMTS 533

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 4/73 (5%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTS 152
             +     L +L L+ N    +       +F  L  L+ L      +       +  L +
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLAL----GAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 153 LTTLNLSYNKIEG 165
           L  LN+++N I+ 
Sbjct: 126 LKELNVAHNLIQS 138

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
           F   E+L+ LD   +    + E   +  F SL+ L  L++   +   +     N L+SL 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 155 TLNLSYNKIEGS 166
            L ++ N  + +
Sbjct: 449 VLKMAGNSFQEN 460

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 3/96 (3%)

Query: 70  QLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQL 129
           Q      + LK    TS    N         L+ LDLS N  +         S      L
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS--QSDFGTTSL 375

Query: 130 KMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165
           K L+L FN V  ++      L  L  L+  ++ ++ 
Sbjct: 376 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ 410

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 15/101 (14%)

Query: 67  RVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSL 126
             + LS N    L +    S S    +       L+ LDLS N    +  N     F  L
Sbjct: 350 EFLDLSRN---GLSFKGCCSQSDFGTT------SLKYLDLSFNGVITMSSN-----FLGL 395

Query: 127 KQLKMLNLGFNYVNDSILPY-LNTLTSLTTLNLSYNKIEGS 166
           +QL+ L+   + +          +L +L  L++S+     +
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 7/77 (9%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTS 152
                 + L+ L+++ N           + F +L  L+ L+L  N +       L  L  
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLP---EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 153 LT----TLNLSYNKIEG 165
           +     +L+LS N +  
Sbjct: 175 MPLLNLSLDLSLNPMNF 191

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.3 bits (113), Expect = 6e-07
 Identities = 21/78 (26%), Positives = 27/78 (34%), Gaps = 9/78 (11%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKM----LNLGFNYVNDSILPYLN 148
             F     L+ LDLS N    IY          L Q+ +    L+L  N +N  I P   
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYC----TDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAF 197

Query: 149 TLTSLTTLNLSYNKIEGS 166
               L  L L  N    +
Sbjct: 198 KEIRLHKLTLRNNFDSLN 215

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 5/78 (6%)

Query: 93  SLFHPFEELQSLDLSENWFTGI--YENRAYDSFGSLKQLKMLNLGFNYVNDS---ILPYL 147
           +       L+   L    F      E     +   L  L +      Y++     I+   
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278

Query: 148 NTLTSLTTLNLSYNKIEG 165
           N LT++++ +L    IE 
Sbjct: 279 NCLTNVSSFSLVSVTIER 296

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 4/97 (4%)

Query: 71  LSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGI--YENRAYDSFGSLKQ 128
           L+     RL   +  +   +        E L +L + E     +  Y +   D F  L  
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283

Query: 129 LKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165
           +   +L    +    +   +       L L   K   
Sbjct: 284 VSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQ 318

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 19/87 (21%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTL-- 150
            LF+    + S  L       + +          + L+++N  F       L  L  L  
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERVKDF---SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 332

Query: 151 --------------TSLTTLNLSYNKI 163
                          SL  L+LS N +
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGL 359

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.9 bits (148), Expect = 1e-11
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 88  SFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY- 146
                S+F     L  LD+S       +       F  L  L++L +  N   ++ LP  
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFN----GIFNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 147 LNTLTSLTTLNLSYNKIE 164
              L +LT L+LS  ++E
Sbjct: 466 FTELRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 88  SFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP-Y 146
             + +  F     LQ L   E     +         G LK LK LN+  N +    LP Y
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLEN----FPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 147 LNTLTSLTTLNLSYNKIE 164
            + LT+L  L+LS NKI+
Sbjct: 145 FSNLTNLEHLDLSSNKIQ 162

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
           F  F ELQ LDLS      I +     ++ SL  L  L L  N +    L   + L+SL 
Sbjct: 48  FFSFPELQVLDLSRCEIQTIED----GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 155 TLNLSYNKIE 164
            L      + 
Sbjct: 104 KLVAVETNLA 113

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
           +     L +L L+ N    +    A  +F  L  L+ L      +       +  L +L 
Sbjct: 72  YQSLSHLSTLILTGNPIQSL----ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 155 TLNLSYNKI 163
            LN+++N I
Sbjct: 128 ELNVAHNLI 136

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.9 bits (122), Expect = 3e-08
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 10/77 (12%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFN---YVNDSILPYLNT 149
            +F     L  LDLS+     +       +F SL  L++LN+  N    V D I      
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPT----AFNSLSSLQVLNMASNQLKSVPDGIFD---R 516

Query: 150 LTSLTTLNLSYNKIEGS 166
           LTSL  + L  N  + S
Sbjct: 517 LTSLQKIWLHTNPWDCS 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.5 bits (121), Expect = 5e-08
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 19/101 (18%)

Query: 67  RVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSL 126
             + LS N    L +    S S    +       L+ LDLS N    +  N     F  L
Sbjct: 350 EFLDLSRN---GLSFKGCCSQSDFGTT------SLKYLDLSFNGVITMSSN-----FLGL 395

Query: 127 KQLKMLNLGFNYVNDSILPYLNT---LTSLTTLNLSYNKIE 164
           +QL+ L+   + +    +   +    L +L  L++S+    
Sbjct: 396 EQLEHLDFQHSNL--KQMSEFSVFLSLRNLIYLDISHTHTR 434

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLN 157
               ++LDLS N    +       SF S  +L++L+L    +         +L+ L+TL 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 158 LSYNKI 163
           L+ N I
Sbjct: 83  LTGNPI 88

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY-LNTLT 151
            +F+    L+ L ++ N F   +     D F  L+ L  L+L    +   + P   N+L+
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDLSQCQLE-QLSPTAFNSLS 494

Query: 152 SLTTLNLSYNKI 163
           SL  LN++ N++
Sbjct: 495 SLQVLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.6 bits (111), Expect = 9e-07
 Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 7/76 (9%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFN---YVNDSILPYLNT 149
                 + L+ L+++ N           + F +L  L+ L+L  N    +  + L  L+ 
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLP---EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 150 LT-SLTTLNLSYNKIE 164
           +     +L+LS N + 
Sbjct: 175 MPLLNLSLDLSLNPMN 190

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 8/71 (11%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP--YLNTLTS 152
               + L+ L  + N     +      S   L  L+ L+L  N ++            TS
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAF------SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 153 LTTLNLSYNKI 163
           L  L+LS+N +
Sbjct: 375 LKYLDLSFNGV 385

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 19/88 (21%), Positives = 27/88 (30%), Gaps = 9/88 (10%)

Query: 77  RRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGF 136
             +  +   S +   +  F      Q L+L    F              LK LK L    
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF-------PTLKLKSLKRLTFTS 334

Query: 137 NYVNDSILPYLNTLTSLTTLNLSYNKIE 164
           N   +        L SL  L+LS N + 
Sbjct: 335 NKGGN--AFSEVDLPSLEFLDLSRNGLS 360

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 21/78 (26%), Positives = 27/78 (34%), Gaps = 9/78 (11%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKM----LNLGFNYVNDSILPYLN 148
             F     L+ LDLS N    IY          L Q+ +    L+L  N +N  I P   
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCT----DLRVLHQMPLLNLSLDLSLNPMN-FIQPGAF 197

Query: 149 TLTSLTTLNLSYNKIEGS 166
               L  L L  N    +
Sbjct: 198 KEIRLHKLTLRNNFDSLN 215

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 9/76 (11%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTS 152
            LF+    + S  L       +   + +      + L+++N  F        P L  L S
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERV---KDFSYNFGWQHLELVNCKFGQ-----FPTLK-LKS 326

Query: 153 LTTLNLSYNKIEGSRT 168
           L  L  + NK   + +
Sbjct: 327 LKRLTFTSNKGGNAFS 342

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 4/73 (5%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTS 152
           +     + L+ L   +   + I          + K L+ L LG N+++   LP       
Sbjct: 99  TALSGPKALKHLFFIQTGISSIDFI----PLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154

Query: 153 LTTLNLSYNKIEG 165
           L  L+   N I  
Sbjct: 155 LKVLDFQNNAIHY 167

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFN---YVNDSILPYLNT 149
           S F     L+ L+LS +         +   F  L  L+ LNL  N     N      L T
Sbjct: 419 SPFQNLHLLKVLNLSHSLLDIS----SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474

Query: 150 LTSLTTLNLSYNKIEG 165
           L  L  L LS+  +  
Sbjct: 475 LGRLEILVLSFCDLSS 490

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 3e-10
 Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 4/71 (5%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
           F     L  LDL+      I+E    D+F S  +L  L L  N +       L+   +L 
Sbjct: 53  FSRLINLTFLDLTRCQIYWIHE----DTFQSQHRLDTLVLTANPLIFMAETALSGPKALK 108

Query: 155 TLNLSYNKIEG 165
            L      I  
Sbjct: 109 HLFFIQTGISS 119

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 9/96 (9%)

Query: 70  QLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQL 129
            L L     +   D + A F  +        ++S++L +++F  I  N    +F     L
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGLCEMS----VESINLQKHYFFNISSN----TFHCFSGL 280

Query: 130 KMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165
           + L+L   +++  +   L  L++L  L LS NK E 
Sbjct: 281 QELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN 315

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.8 bits (135), Expect = 6e-10
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY-LNTLTSL 153
                 L+ L LS N F  + +     S  +   L  L++  N     +    L  L +L
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQI----SASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352

Query: 154 TTLNLSYNKIEGS 166
             L+LS++ IE S
Sbjct: 353 RELDLSHDDIETS 365

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 2/71 (2%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
               E L+ LDLS +               +L  L+ LNL +N               L 
Sbjct: 346 LENLENLRELDLSHDDIETSDCCN--LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE 403

Query: 155 TLNLSYNKIEG 165
            L+L++ +++ 
Sbjct: 404 LLDLAFTRLKV 414

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 94  LFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSL 153
            F    +L+ LDL+           A   F +L  LK+LNL  + ++ S     + L +L
Sbjct: 395 AFKECPQLELLDLAFTRLKVK---DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451

Query: 154 TTLNLSYNKIEG 165
             LNL  N    
Sbjct: 452 QHLNLQGNHFPK 463

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 4/68 (5%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLN 157
               + L+ S N    I       +F  L  L  L+L    +         +   L TL 
Sbjct: 32  PNSTECLEFSFNVLPTIQNT----TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLV 87

Query: 158 LSYNKIEG 165
           L+ N +  
Sbjct: 88  LTANPLIF 95

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 5/72 (6%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
           F   + +  +DLS N  T        ++   LK +  LNL  N+++  +   L  L+   
Sbjct: 496 FTSLKMMNHVDLSHNRLTSSSI----EALSHLKGI-YLNLASNHISIILPSLLPILSQQR 550

Query: 155 TLNLSYNKIEGS 166
           T+NL  N ++ +
Sbjct: 551 TINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTS 152
           +       L+ L LS    + I +     +F SLK +  ++L  N +  S +  L+ L  
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSIDQ----HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525

Query: 153 LTTLNLSYNKIEG 165
           +  LNL+ N I  
Sbjct: 526 I-YLNLASNHISI 537

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 88  SFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVN-DSILPY 146
           S + +    P E+L+ LD   N    + +    +   SL+Q   L+L  N  +   I P 
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNNAIHYLSK----EDMSSLQQATNLSLNLNGNDIAGIEPG 197

Query: 147 LNTLTSLTTLNLSYNKI 163
                   +LN    + 
Sbjct: 198 AFDSAVFQSLNFGGTQN 214

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 10/72 (13%), Positives = 22/72 (30%), Gaps = 6/72 (8%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLK--QLKMLNLGFNYVNDSILPYLNTLTS 152
               + L      +     I        F  L    ++ +NL  +Y  +      +  + 
Sbjct: 224 NSTIQSLWLGTFEDMDDEDISP----AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG 279

Query: 153 LTTLNLSYNKIE 164
           L  L+L+   + 
Sbjct: 280 LQELDLTATHLS 291

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 59.2 bits (144), Expect = 3e-11
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTS 152
           SL      ++ LDLS N  + I             +L++LNL  N + +     L +L++
Sbjct: 28  SLRQSAWNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYE--TLDLESLST 81

Query: 153 LTTLNLSYNKIE 164
           L TL+L+ N ++
Sbjct: 82  LRTLDLNNNYVQ 93

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 4/70 (5%)

Query: 94  LFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSL 153
           +       +   ++++       +       S   +K L+L  N ++      L   T L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALAS----LRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 154 TTLNLSYNKI 163
             LNLS N +
Sbjct: 61  ELLNLSSNVL 70

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND-SILPYLNTLTSLTTL 156
            +  +++ L+ N  T + +       G   +++ L+L  N ++  +      +  +L  L
Sbjct: 119 GQGKKNIYLANNKITMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 157 NLSYNKIE 164
           NL YN I 
Sbjct: 175 NLQYNFIY 182

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
                 +Q LDL  N    +      +   S   L+ LNL +N++    +        L 
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFA---ELAASSDTLEHLNLQYNFI--YDVKGQVVFAKLK 194

Query: 155 TLNLSYNKIE 164
           TL+LS NK+ 
Sbjct: 195 TLDLSSNKLA 204

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 6/64 (9%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L++LDLS N    +        F S   +  ++L  N +   I   L    +L   +L  
Sbjct: 193 LKTLDLSSNKLAFMGPE-----FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246

Query: 161 NKIE 164
           N   
Sbjct: 247 NGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.5 bits (111), Expect = 8e-07
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTS 152
            L    + L+ L+L  N+   +             +LK L+L  N +   + P   +   
Sbjct: 163 ELAASSDTLEHLNLQYNFIYDV------KGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAG 215

Query: 153 LTTLNLSYNKIE 164
           +T ++L  NK+ 
Sbjct: 216 VTWISLRNNKLV 227

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 22/88 (25%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND-SILPYL---- 147
           +   PF +L+ L+LS N               SL  L+ L+L  NYV +  + P +    
Sbjct: 52  ADLAPFTKLELLNLSSNVLYET------LDLESLSTLRTLDLNNNYVQELLVGPSIETLH 105

Query: 148 -----------NTLTSLTTLNLSYNKIE 164
                      +       + L+ NKI 
Sbjct: 106 AANNNISRVSCSRGQGKKNIYLANNKIT 133

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.7 bits (96), Expect = 7e-05
 Identities = 5/44 (11%), Positives = 19/44 (43%)

Query: 121 DSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164
           +   +  + K+  +  + +  ++     +  ++  L+LS N + 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS 47

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 58.7 bits (142), Expect = 7e-11
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTS 152
           SL      ++ LDLS N  + I             +L++LNL  N + +     L +L++
Sbjct: 28  SLRQSAWNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYE--TLDLESLST 81

Query: 153 LTTLNLSYNKIE 164
           L TL+L+ N ++
Sbjct: 82  LRTLDLNNNYVQ 93

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.4 bits (123), Expect = 2e-08
 Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 4/72 (5%)

Query: 94  LFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSL 153
           +       +   ++++       +       S   +K L+L  N ++      L   T L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALAS----LRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 154 TTLNLSYNKIEG 165
             LNLS N +  
Sbjct: 61  ELLNLSSNVLYE 72

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.6 bits (121), Expect = 3e-08
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
                 +Q LDL  N    +      +   S   L+ LNL +N++    +        L 
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFA---ELAASSDTLEHLNLQYNFI--YDVKGQVVFAKLK 194

Query: 155 TLNLSYNKIE 164
           TL+LS NK+ 
Sbjct: 195 TLDLSSNKLA 204

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.8 bits (119), Expect = 7e-08
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND-SILPYLNTLTSLTTL 156
            +  +++ L+ N  T + +       G   +++ L+L  N ++  +      +  +L  L
Sbjct: 119 GQGKKNIYLANNKITMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 157 NLSYNKIE 164
           NL YN I 
Sbjct: 175 NLQYNFIY 182

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.1 bits (112), Expect = 6e-07
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTS 152
            L    + L+ L+L  N+   +             +LK L+L  N +   + P   +   
Sbjct: 163 ELAASSDTLEHLNLQYNFIYDV------KGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAG 215

Query: 153 LTTLNLSYNKIE 164
           +T ++L  NK+ 
Sbjct: 216 VTWISLRNNKLV 227

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 6/64 (9%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L++LDLS N    +        F S   +  ++L  N +   I   L    +L   +L  
Sbjct: 193 LKTLDLSSNKLAFMGPE-----FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246

Query: 161 NKIE 164
           N   
Sbjct: 247 NGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 22/88 (25%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND-SILPYLNTL- 150
           +   PF +L+ L+LS N               SL  L+ L+L  NYV +  + P + TL 
Sbjct: 52  ADLAPFTKLELLNLSSNVLYET------LDLESLSTLRTLDLNNNYVQELLVGPSIETLH 105

Query: 151 --------------TSLTTLNLSYNKIE 164
                              + L+ NKI 
Sbjct: 106 AANNNISRVSCSRGQGKKNIYLANNKIT 133

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 5/44 (11%), Positives = 19/44 (43%)

Query: 121 DSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164
           +   +  + K+  +  + +  ++     +  ++  L+LS N + 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS 47

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLN 157
              ++ L ++    T        +    L  L+ L +    V    +P L+ LTSLT L+
Sbjct: 65  AHNIKDLTINNIHATNY------NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 158 LSYNKIEGS 166
           +S++  + S
Sbjct: 119 ISHSAHDDS 127

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L+ L +     T    +    +   L  L +L++  +  +DSIL  +NTL  + +++LSY
Sbjct: 90  LERLRIMGKDVT----SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145

Query: 161 NK 162
           N 
Sbjct: 146 NG 147

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L  LD+S +       +       +L ++  ++L +N     I+P L TL  L +LN+ +
Sbjct: 114 LTLLDISHSAHD----DSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQF 168

Query: 161 NKI 163
           + +
Sbjct: 169 DGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 9/64 (14%)

Query: 101 LQSLDLSENWF-TGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLS 159
           + S+DLS N   T I          +L +LK LN+ F+ V+D     +     L  L   
Sbjct: 138 VNSIDLSYNGAITDI------MPLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAF 189

Query: 160 YNKI 163
              I
Sbjct: 190 SQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 9/67 (13%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLN 157
           F+   +  L ++    I       +   +  L  + L    V D  L  +    ++  L 
Sbjct: 22  FKAYLNGLLGQSSTANI-------TEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLT 72

Query: 158 LSYNKIE 164
           ++     
Sbjct: 73  INNIHAT 79

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 20/99 (20%), Positives = 42/99 (42%), Gaps = 7/99 (7%)

Query: 67  RVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSL 126
           +++ ++ N   R    ++    +  ++     E++Q + +  N            S   +
Sbjct: 276 QLINVACN---RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF---PVETSLQKM 329

Query: 127 KQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165
           K+L ML   +N +    LP   +   L +LNL+YN+I  
Sbjct: 330 KKLGMLECLYNQLE-GKLPAFGSEIKLASLNLAYNQITE 367

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAY---DSFGSLKQLKMLNLGFNYVNDSILP--YL 147
            LF     L S++L  N  T I +N      ++F +   L  ++L FN +   +      
Sbjct: 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA 509

Query: 148 NTLTSLTTLNLSYNKIEG 165
            TL  L  ++LSYN    
Sbjct: 510 TTLPYLVGIDLSYNSFSK 527

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.4 bits (126), Expect = 9e-09
 Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 101 LQSLDLSENWFTGIYENRAY---DSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLN 157
           + ++D S N    +          +      +  +NL  N ++       +T + L+++N
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463

Query: 158 LSYNKIEG 165
           L  N +  
Sbjct: 464 LMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 12/72 (16%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 100 ELQSLDLSENWFTGIYENRAY----DSFGSLKQLKMLNLGFNY-VNDSILPYLNTLTSLT 154
           E+Q ++++ N      + +            ++++++ +G+N      +   L  +  L 
Sbjct: 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLG 333

Query: 155 TLNLSYNKIEGS 166
            L   YN++EG 
Sbjct: 334 MLECLYNQLEGK 345

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 10/81 (12%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFN-------YVNDSILP 145
           +     E++++L  + N    I          S+  +  ++  +N          D + P
Sbjct: 371 NFCGFTEQVENLSFAHNKLKYIPNI---FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427

Query: 146 YLNTLTSLTTLNLSYNKIEGS 166
                 +++++NLS N+I   
Sbjct: 428 TPFKGINVSSINLSNNQISKF 448

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.7 bits (119), Expect = 8e-08
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND-SILPYLNTLTSLTTLNLS 159
           L SL+L+ N  T I  N      G  +Q++ L+   N +     +    +++ ++ ++ S
Sbjct: 355 LASLNLAYNQITEIPAN----FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFS 410

Query: 160 YNKIEG 165
           YN+I  
Sbjct: 411 YNEIGS 416

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 15/71 (21%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLG------FNYVNDSILPYLNTLTSLT 154
           L  +DLS N F+            +   LK   +        N         +    SLT
Sbjct: 515 LVGIDLSYNSFSKFPT-----QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT 569

Query: 155 TLNLSYNKIEG 165
            L +  N I  
Sbjct: 570 QLQIGSNDIRK 580

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 20/140 (14%), Positives = 38/140 (27%), Gaps = 22/140 (15%)

Query: 39  PSWVGEDDGMPSDC-------CDAW---EGVMCNATTRRVMQLSLNYTRRLKYYDRTSAS 88
            +W  +  G             D W    GV  N+  R V  LSL          R   +
Sbjct: 45  KNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGR-VTGLSLEGFGA---SGRVPDA 100

Query: 89  FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYL- 147
              ++      EL+ L L  +               +    +       +   + + Y  
Sbjct: 101 IGQLT------ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDP 154

Query: 148 -NTLTSLTTLNLSYNKIEGS 166
               + L    ++ +  + S
Sbjct: 155 REDFSDLIKDCINSDPQQKS 174

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 7/64 (10%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L  L +  N    +       +      + +L++  N      L Y+          L Y
Sbjct: 568 LTQLQIGSNDIRKV-------NEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFY 620

Query: 161 NKIE 164
           +K +
Sbjct: 621 DKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 15/80 (18%)

Query: 101 LQSLDLSENWFTGI-------YENRAY--------DSFGSLKQLKMLNLGFNYVNDSILP 145
           L+   +  + F           EN  Y          + +LK L  + +        +  
Sbjct: 208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT 267

Query: 146 YLNTLTSLTTLNLSYNKIEG 165
           +L  L  +  +N++ N+   
Sbjct: 268 FLKALPEMQLINVACNRGIS 287

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 8/71 (11%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVN---DSI--LPYLNTLTSLTT 155
           L S+DL  N  T + ++       +L  L  ++L +N  +           L        
Sbjct: 490 LTSIDLRFNKLTKLSDDF---RATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQ 546

Query: 156 LNLSYNKIEGS 166
            +   N+    
Sbjct: 547 RDAQGNRTLRE 557

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 8/86 (9%), Positives = 21/86 (24%), Gaps = 24/86 (27%)

Query: 100 ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFN-------------------YVN 140
           +   +    N  T + +     +   L +L+   +G +                      
Sbjct: 184 KDTQIGQLSNNITFVSK-----AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238

Query: 141 DSILPYLNTLTSLTTLNLSYNKIEGS 166
            +     + L  LT + +        
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTK 264

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.0 bits (136), Expect = 5e-10
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L+ L L+E+  + I          +L ++  LNLG N+ N S L  L+ +T L  L ++ 
Sbjct: 112 LRELYLNEDNISDI------SPLANLTKMYSLNLGANH-NLSDLSPLSNMTGLNYLTVTE 164

Query: 161 NKIEG 165
           +K++ 
Sbjct: 165 SKVKD 169

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 91  NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTL 150
           +++      +L+ L++  N  + I          +L QL  L L  N + +  +  +  L
Sbjct: 257 DINAVKDLTKLKMLNVGSNQISDI------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGL 310

Query: 151 TSLTTLNLSYNKIEG 165
           T+LTTL LS N I  
Sbjct: 311 TNLTTLFLSQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L  L++  N  + I      ++   L +LKMLN+G N ++D  +  LN L+ L +L L+ 
Sbjct: 245 LTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNN 296

Query: 161 NKIEGS 166
           N++   
Sbjct: 297 NQLGNE 302

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.5 bits (132), Expect = 2e-09
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 7/65 (10%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           + SL+L  N               ++  L  L +  + V D  +  +  LT L +L+L+Y
Sbjct: 134 MYSLNLGANHNLSDLSP-----LSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNY 186

Query: 161 NKIEG 165
           N+IE 
Sbjct: 187 NQIED 191

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.1 bits (131), Expect = 2e-09
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L+ L+L+ N  T I          +L +L  L +G N +  + +  L  LT+L  L L+ 
Sbjct: 68  LEYLNLNGNQITDI------SPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNE 119

Query: 161 NKIEG 165
           + I  
Sbjct: 120 DNISD 124

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.7 bits (130), Expect = 3e-09
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 8/65 (12%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L SL L+ N    I          SL  L       N + D  +  +  +T L +L +  
Sbjct: 179 LYSLSLNYNQIEDI------SPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGN 230

Query: 161 NKIEG 165
           NKI  
Sbjct: 231 NKITD 235

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.3 bits (129), Expect = 4e-09
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L SL +  N  T +          +L QL  L +G N ++D  +  +  LT L  LN+  
Sbjct: 223 LNSLKIGNNKITDL------SPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGS 274

Query: 161 NKIEG 165
           N+I  
Sbjct: 275 NQISD 279

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.8 bits (125), Expect = 1e-08
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 91  NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTL 150
           ++S+ +   +L SL L+ N           +  G L  L  L L  N++ D  +  L +L
Sbjct: 279 DISVLNNLSQLNSLFLNNNQLGNEDM----EVIGGLTNLTTLFLSQNHITD--IRPLASL 332

Query: 151 TSLTTLNLSYNKIE 164
           + + + + +   I+
Sbjct: 333 SKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.8 bits (125), Expect = 1e-08
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLN 157
             +L +L +  N  T I       +  +L  L+ L L  + ++D  +  L  LT + +LN
Sbjct: 87  LVKLTNLYIGTNKITDI------SALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLN 138

Query: 158 LSYNKI 163
           L  N  
Sbjct: 139 LGANHN 144

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.8 bits (125), Expect = 1e-08
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 8/70 (11%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
               E +  L ++      I           L  L+ LNL  N + D  +  L+ L  LT
Sbjct: 40  QEELESITKLVVAGEKVASI------QGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLT 91

Query: 155 TLNLSYNKIE 164
            L +  NKI 
Sbjct: 92  NLYIGTNKIT 101

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 8/71 (11%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
                 L       N  T I          ++ +L  L +G N + D  L  L  L+ LT
Sbjct: 195 LASLTSLHYFTAYVNQITDI------TPVANMTRLNSLKIGNNKITD--LSPLANLSQLT 246

Query: 155 TLNLSYNKIEG 165
            L +  N+I  
Sbjct: 247 WLEIGTNQISD 257

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.8 bits (120), Expect = 7e-08
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 8/68 (11%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLN 157
             E     L +   T +       +   L+ +  L +    V    +  +  LT+L  LN
Sbjct: 21  LAEGIRAVLQKASVTDV------VTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLN 72

Query: 158 LSYNKIEG 165
           L+ N+I  
Sbjct: 73  LNGNQITD 80

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.4 bits (134), Expect = 9e-10
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 8/65 (12%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L  ++ S N  T I          +L +L  + +  N + D  +  L  LT+LT L L  
Sbjct: 70  LTQINFSNNQLTDI------TPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFN 121

Query: 161 NKIEG 165
           N+I  
Sbjct: 122 NQITD 126

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L  + ++ N    I          +L  L  L L  N + D  +  L  LT+L  L LS 
Sbjct: 92  LVDILMNNNQIADI------TPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSS 143

Query: 161 NKIEG 165
           N I  
Sbjct: 144 NTISD 148

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.4 bits (129), Expect = 5e-09
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 8/65 (12%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L  L L  N  + I          SL +L+ L    N V+D  +  L  LT++  L+  +
Sbjct: 311 LTYLTLYFNNISDI------SPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGH 362

Query: 161 NKIEG 165
           N+I  
Sbjct: 363 NQISD 367

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.7 bits (127), Expect = 7e-09
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 8/65 (12%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L+ LD+S N  + I           L  L+ L    N ++D  +  L  LT+L  L+L+ 
Sbjct: 179 LERLDISSNKVSDI------SVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNG 230

Query: 161 NKIEG 165
           N+++ 
Sbjct: 231 NQLKD 235

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.7 bits (127), Expect = 7e-09
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L  L L+ N    I       +  SL  L  L+L  N +++  L  L+ LT LT L L  
Sbjct: 223 LDELSLNGNQLKDI------GTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGA 274

Query: 161 NKIEG 165
           N+I  
Sbjct: 275 NQISN 279

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.3 bits (126), Expect = 9e-09
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 100 ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLS 159
            L +L+L+EN    I          +LK L  L L FN ++D  +  +++LT L  L   
Sbjct: 288 ALTNLELNENQLEDI------SPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFY 339

Query: 160 YNKIEG 165
            NK+  
Sbjct: 340 NNKVSD 345

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 8/65 (12%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           LQ L    N  + +       S  +L  +  L+ G N ++D  L  L  LT +T L L+ 
Sbjct: 333 LQRLFFYNNKVSDV------SSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLND 384

Query: 161 NKIEG 165
                
Sbjct: 385 QAWTN 389

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.3 bits (121), Expect = 4e-08
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L  L L  N  + I           L  L  L L  N + D  +  ++ L +LT L L +
Sbjct: 267 LTELKLGANQISNI------SPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYF 318

Query: 161 NKIEG 165
           N I  
Sbjct: 319 NNISD 323

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 8/68 (11%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLN 157
             E     L +   T         S   L Q+  L      +    +  +  L +LT +N
Sbjct: 23  LAEKMKTVLGKTNVTDT------VSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 74

Query: 158 LSYNKIEG 165
            S N++  
Sbjct: 75  FSNNQLTD 82

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L  L+LS N  + I       +   L  L+ L+ G      + L  L  LT+L  L++S 
Sbjct: 136 LNRLELSSNTISDI------SALSGLTSLQQLSFGN---QVTDLKPLANLTTLERLDISS 186

Query: 161 NKIEG 165
           NK+  
Sbjct: 187 NKVSD 191

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.9 bits (112), Expect = 7e-07
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           LQ L    N  T +          +L  L+ L++  N V+D  +  L  LT+L +L  + 
Sbjct: 158 LQQLSFG-NQVTDL------KPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATN 208

Query: 161 NKIEG 165
           N+I  
Sbjct: 209 NQISD 213

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.0 bits (89), Expect = 8e-04
 Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 2/43 (4%)

Query: 122 SFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164
           +  +L +     LG   V D        L  +TTL      I+
Sbjct: 19  TDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIK 59

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.9 bits (132), Expect = 1e-09
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 100 ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLS 159
           ++Q   +  N       +    S   + +L +L+   N V    L    T   LT L L 
Sbjct: 549 KIQIFYMGYNNLEEFPAS---ASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLD 603

Query: 160 YNKIEG 165
           YN+IE 
Sbjct: 604 YNQIEE 609

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.3 bits (128), Expect = 5e-09
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 8/79 (10%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAY---DSFGSLKQLKMLNLGFN---YVNDSILPY 146
            LF     + ++ LS N  T I EN       ++ +   L  ++L FN    ++D     
Sbjct: 691 ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR-- 748

Query: 147 LNTLTSLTTLNLSYNKIEG 165
             TL  L+ +++SYN    
Sbjct: 749 ATTLPYLSNMDVSYNCFSS 767

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.4 bits (123), Expect = 2e-08
 Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 101 LQSLDLSENWFTGIYE-----NRAYDSFGSLKQLKMLNLGFNYVNDSILPY-LNTLTSLT 154
           LQSL+++ N      +      R  D   +  ++++  +G+N + +      L  +  L 
Sbjct: 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLG 576

Query: 155 TLNLSYNKIE 164
            L+  +NK+ 
Sbjct: 577 LLDCVHNKVR 586

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 6e-08
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 15/86 (17%)

Query: 95  FHPFEELQSLDLSENWFTGI---------------YENRAYDSFGSLKQLKMLNLGFNYV 139
                +LQ +  + + FT                        S+ +LK L  + L     
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503

Query: 140 NDSILPYLNTLTSLTTLNLSYNKIEG 165
              +  +L  L  L +LN++ N+   
Sbjct: 504 MTQLPDFLYDLPELQSLNIACNRGIS 529

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.3 bits (115), Expect = 2e-07
 Identities = 13/78 (16%), Positives = 31/78 (39%), Gaps = 8/78 (10%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFN---YVNDSILPYLNT 149
                 ++++ L  S N    I       +  S+  +  ++  +N       +I   ++ 
Sbjct: 613 DFCAFTDQVEGLGFSHNKLKYI---PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669

Query: 150 --LTSLTTLNLSYNKIEG 165
               + +T+ LSYN+I+ 
Sbjct: 670 YKGINASTVTLSYNEIQK 687

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.3 bits (115), Expect = 2e-07
 Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 11/71 (15%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDS-----ILPY-LNTLTSLT 154
           L ++D+S N F+            +  QLK   +      +        P  + T  SL 
Sbjct: 755 LSNMDVSYNCFSSFPT-----QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809

Query: 155 TLNLSYNKIEG 165
            L +  N I  
Sbjct: 810 QLQIGSNDIRK 820

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 9/68 (13%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP---YLNTLTSLTTLN 157
           L  L L  N    I E    D      Q++ L    N +    +P      ++  + +++
Sbjct: 597 LTDLKLDYNQIEEIPE----DFCAFTDQVEGLGFSHNKL--KYIPNIFNAKSVYVMGSVD 650

Query: 158 LSYNKIEG 165
            SYNKI  
Sbjct: 651 FSYNKIGS 658

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 1/65 (1%)

Query: 101 LQSLDLSENWFTGIYENR-AYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLS 159
           + S+D S N       N               + L +N +         T + ++T+ LS
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705

Query: 160 YNKIE 164
            N + 
Sbjct: 706 NNLMT 710

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.9 bits (106), Expect = 3e-06
 Identities = 12/77 (15%), Positives = 21/77 (27%), Gaps = 7/77 (9%)

Query: 87  ASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY 146
              +N S    F      D   N     +         +   L  L +G N +    +  
Sbjct: 770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWP----TGITTCPSLIQLQIGSNDIRK--VDE 823

Query: 147 LNTLTSLTTLNLSYNKI 163
                 L  L+++ N  
Sbjct: 824 -KLTPQLYILDIADNPN 839

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 23/154 (14%), Positives = 40/154 (25%), Gaps = 17/154 (11%)

Query: 13  TERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCD--AWEGVMCNATTRRVMQ 70
            +  AL AI       +   Y   I  +    +     +        GV  +   R V  
Sbjct: 269 KDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGR-VTG 327

Query: 71  LSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLK 130
           LSL          R   +   ++      EL+ L    +  T                  
Sbjct: 328 LSLAGFGAKG---RVPDAIGQLT------ELKVLSFGTHSETVSGR----LFGDEELTPD 374

Query: 131 MLNLGFNYVNDSILP-YLNTLTSLTTLNLSYNKI 163
           M     + +       +L+    L   +L  + I
Sbjct: 375 MSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAI 408

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 8/87 (9%)

Query: 81  YYDRTSASFMNMSL---FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFN 137
            +D   A +   +L          + L LS N+   +       SF  L+QL++L LG  
Sbjct: 3   SFDGRIAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTA----SSFPFLEQLQLLELGSQ 58

Query: 138 YVNDSILPY-LNTLTSLTTLNLSYNKI 163
           Y   +I       L +L  L+L  +KI
Sbjct: 59  YTPLTIDKEAFRNLPNLRILDLGSSKI 85

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.0 bits (130), Expect = 3e-09
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 3/78 (3%)

Query: 88  SFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND-SILPY 146
            F++   F     L  L L     +          F +LK L  L+L  N +    + P 
Sbjct: 86  YFLHPDAFQGLFHLFELRLYFCGLSDAVLKD--GYFRNLKALTRLDLSKNQIRSLYLHPS 143

Query: 147 LNTLTSLTTLNLSYNKIE 164
              L SL +++ S N+I 
Sbjct: 144 FGKLNSLKSIDFSSNQIF 161

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.9 bits (127), Expect = 7e-09
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTS 152
             F+  + LQ L+LS N    +Y +    +F  L ++  ++L  N++          L  
Sbjct: 308 EAFYGLDNLQVLNLSYNLLGELYSS----NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363

Query: 153 LTTLNLSYNKIE 164
           L TL+L  N + 
Sbjct: 364 LQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.5 bits (126), Expect = 9e-09
 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 88  SFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYL 147
             +N  +F   ++L+ L+L+ N    I +    ++F  L  L++LNL +N + +      
Sbjct: 279 FSLNSRVFETLKDLKVLNLAYNKINKIAD----EAFYGLDNLQVLNLSYNLLGELYSSNF 334

Query: 148 NTLTSLTTLNLSYNKI 163
             L  +  ++L  N I
Sbjct: 335 YGLPKVAYIDLQKNHI 350

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.8 bits (119), Expect = 8e-08
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENR-AYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLT 151
                   L+ L L EN     +E    +D F  L  L++L L  NY+N       + LT
Sbjct: 445 QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT 504

Query: 152 SLTTLNLSYNKI 163
           +L  L+L+ N++
Sbjct: 505 ALRGLSLNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 2e-07
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFN---YVNDSILPYLNT 149
             F   + L  LDLS+N    +Y +    SFG L  LK ++   N    V +  L  L  
Sbjct: 117 GYFRNLKALTRLDLSKNQIRSLYLH---PSFGKLNSLKSIDFSSNQIFLVCEHELEPL-Q 172

Query: 150 LTSLTTLNLSYNKI 163
             +L+  +L+ N +
Sbjct: 173 GKTLSFFSLAANSL 186

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 3e-07
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY-LNTLT 151
           S F   E+LQ L+L   +     +    ++F +L  L++L+LG + +   + P     L 
Sbjct: 42  SSFPFLEQLQLLELGSQYTPLTIDK---EAFRNLPNLRILDLGSSKIY-FLHPDAFQGLF 97

Query: 152 SLTTLNLSYNKIE 164
            L  L L +  + 
Sbjct: 98  HLFELRLYFCGLS 110

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.9 bits (114), Expect = 4e-07
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           ++ LDLS  +   +        F +LK LK+LNL +N +N         L +L  LNLSY
Sbjct: 268 VRHLDLSHGFVFSLNSR----VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323

Query: 161 NKIE 164
           N + 
Sbjct: 324 NLLG 327

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.9 bits (114), Expect = 4e-07
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNT--- 149
                   LQ L L++N F+    ++   +      L+ L LG N +  +    L     
Sbjct: 420 YFLLRVPHLQILILNQNRFSSCSGDQ---TPSENPSLEQLFLGENMLQLAWETELCWDVF 476

Query: 150 --LTSLTTLNLSYNKIE 164
             L+ L  L L++N + 
Sbjct: 477 EGLSHLQVLYLNHNYLN 493

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 9/69 (13%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
           F+   ++  +DL +N    I +     +F  L++L+ L+L  N      L  ++ + S+ 
Sbjct: 334 FYGLPKVAYIDLQKNHIAIIQDQ----TFKFLEKLQTLDLRDNA-----LTTIHFIPSIP 384

Query: 155 TLNLSYNKI 163
            + LS NK+
Sbjct: 385 DIFLSGNKL 393

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 12/89 (13%)

Query: 88  SFMNMSLFHPFEELQSLDLSENWFTGIYENRAYD----SFGSLKQLKMLNLGFNYV---- 139
           + +    F   E+LQ+LDL +N  T I+   +      S   L  L  +NL  N +    
Sbjct: 351 AIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSE 410

Query: 140 ----NDSILPYLNTLTSLTTLNLSYNKIE 164
               N  IL +L  +  L  L L+ N+  
Sbjct: 411 NRLENLDILYFLLRVPHLQILILNQNRFS 439

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.3 bits (97), Expect = 6e-05
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 4/67 (5%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYL-NTLTSLTTLNLS 159
              + LSEN    +           +  L++L L  N  +        +   SL  L L 
Sbjct: 403 ANLIHLSENRLENL---DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459

Query: 160 YNKIEGS 166
            N ++ +
Sbjct: 460 ENMLQLA 466

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 38.6 bits (90), Expect = 6e-04
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 9/102 (8%)

Query: 67  RVMQLSLNYTRRLKYYDRTSA-SFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGS 125
            ++ +S N        + ++A S            +       +      +N    +F  
Sbjct: 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN----TFAG 262

Query: 126 LKQ--LKMLNLGFNYVNDSILPY-LNTLTSLTTLNLSYNKIE 164
           L +  ++ L+L   +V  S+      TL  L  LNL+YNKI 
Sbjct: 263 LARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKIN 303

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.6 bits (128), Expect = 4e-09
 Identities = 21/129 (16%), Positives = 42/129 (32%), Gaps = 20/129 (15%)

Query: 36  KILPSWVGEDDGMPSDCCDAWEGVMCNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLF 95
            + P      D + S        +       RV+ L+      L + ++           
Sbjct: 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQ----------- 461

Query: 96  HPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTT 155
                +  LDLS N    +          +L+ L++L    N + +  +  +  L  L  
Sbjct: 462 --LLLVTHLDLSHNRLRALPPA-----LAALRCLEVLQASDNALEN--VDGVANLPRLQE 512

Query: 156 LNLSYNKIE 164
           L L  N+++
Sbjct: 513 LLLCNNRLQ 521

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.2 bits (128), Expect = 6e-09
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 4/73 (5%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP-YLNTLT 151
           S F P   L+ L+L  N +  +        F +L  L+ L +G       I       LT
Sbjct: 92  SWFGPLSSLKYLNLMGNPYQTLGVT---SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148

Query: 152 SLTTLNLSYNKIE 164
           SL  L +    + 
Sbjct: 149 SLNELEIKALSLR 161

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.8 bits (127), Expect = 8e-09
 Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 3/80 (3%)

Query: 85  TSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSIL 144
                 N +    +  LQ+L LS+N    +   +  +   +LK L  L++  N  +  + 
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSM--QKTGEILLTLKNLTSLDISRNTFH-PMP 403

Query: 145 PYLNTLTSLTTLNLSYNKIE 164
                   +  LNLS   I 
Sbjct: 404 DSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.5 bits (121), Expect = 4e-08
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
                 LQ L L  +    I      D+F SL  L+ L+L  N+++     +   L+SL 
Sbjct: 46  LRACANLQVLILKSSRINTIEG----DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101

Query: 155 TLNLSYNKI 163
            LNL  N  
Sbjct: 102 YLNLMGNPY 110

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 7/80 (8%)

Query: 88  SFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY- 146
            +   +++   E+++ + +  +    +  +        LK L+ L+L  N + +  L   
Sbjct: 299 FYDLSTVYSLLEKVKRITVENSKVFLVPCS----FSQHLKSLEFLDLSENLMVEEYLKNS 354

Query: 147 --LNTLTSLTTLNLSYNKIE 164
                  SL TL LS N + 
Sbjct: 355 ACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 15/153 (9%), Positives = 46/153 (30%), Gaps = 4/153 (2%)

Query: 11  LETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVMCNATTRRVMQ 70
           +         +  F  S   V      +         +  +  +    ++        ++
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257

Query: 71  LSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLK 130
                   L  ++ + +  ++         ++ L + + +            +  L+++K
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST----VYSLLEKVK 313

Query: 131 MLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKI 163
            + +  + V      +   L SL  L+LS N +
Sbjct: 314 RITVENSKVFLVPCSFSQHLKSLEFLDLSENLM 346

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 22/89 (24%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNY---VNDSILPYLNT 149
            +    + L SLD+S N F  +      DS    ++++ LNL       V   I   L  
Sbjct: 381 EILLTLKNLTSLDISRNTFHPMP-----DSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEV 435

Query: 150 L--------------TSLTTLNLSYNKIE 164
           L                L  L +S NK++
Sbjct: 436 LDVSNNNLDSFSLFLPRLQELYISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.8 bits (114), Expect = 4e-07
 Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 4/71 (5%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
           F     L  L++               S  S++ +  L L  +     +  + + L+S+ 
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQ----SLKSIRDIHHLTLHLSESAFLLEIFADILSSVR 199

Query: 155 TLNLSYNKIEG 165
            L L    +  
Sbjct: 200 YLELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 8/68 (11%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTLTSLTT 155
              ++SLDLS N  T I          +   L++L L  + +  + +      +L SL  
Sbjct: 25  TAAMKSLDLSFNKITYIGHG----DLRACANLQVLILKSSRI--NTIEGDAFYSLGSLEH 78

Query: 156 LNLSYNKI 163
           L+LS N +
Sbjct: 79  LDLSDNHL 86

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 5/78 (6%)

Query: 88  SFMNMSLFHPFEELQSLDLS-ENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY 146
           +    SLF     LQ+L +     F+ I        F  L  L  L +    + +     
Sbjct: 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRR----IDFAGLTSLNELEIKALSLRNYQSQS 167

Query: 147 LNTLTSLTTLNLSYNKIE 164
           L ++  +  L L  ++  
Sbjct: 168 LKSIRDIHHLTLHLSESA 185

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 10/67 (14%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLN 157
            + L+ LD+S N                L +L+ L +  N +    LP  +    L  + 
Sbjct: 430 PQTLEVLDVSNNNLDSFSLF--------LPRLQELYISRNKL--KTLPDASLFPVLLVMK 479

Query: 158 LSYNKIE 164
           +S N+++
Sbjct: 480 ISRNQLK 486

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 12/74 (16%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFN---YVNDSILPYLNT 149
           S       LQ L +S N    +              L ++ +  N    V D I    + 
Sbjct: 445 SFSLFLPRLQELYISRNKLKTL------PDASLFPVLLVMKISRNQLKSVPDGIF---DR 495

Query: 150 LTSLTTLNLSYNKI 163
           LTSL  + L  N  
Sbjct: 496 LTSLQKIWLHTNPW 509

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.0 bits (127), Expect = 7e-09
 Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 91  NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTL 150
           + +    +  L  +DLS N    I     Y  F  +++L+ L +  N +  ++  Y   +
Sbjct: 246 DTAWLLNYPGLVEVDLSYNELEKI----MYHPFVKMQRLERLYISNNRLV-ALNLYGQPI 300

Query: 151 TSLTTLNLSYNKIE 164
            +L  L+LS+N + 
Sbjct: 301 PTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.9 bits (124), Expect = 1e-08
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 8/74 (10%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP--YLNTL 150
           +L   F +++ L+L++     I       +F     ++ L +GFN +    LP      +
Sbjct: 69  ALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAI--RYLPPHVFQNV 122

Query: 151 TSLTTLNLSYNKIE 164
             LT L L  N + 
Sbjct: 123 PLLTVLVLERNDLS 136

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.2 bits (117), Expect = 1e-07
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 10/75 (13%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFN---YVNDSILPYLNT 149
            +F     L  L L  N  + +        F +  +L  L++  N    + D        
Sbjct: 117 HVFQNVPLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNNNLERIEDDT---FQA 169

Query: 150 LTSLTTLNLSYNKIE 164
            TSL  L LS N++ 
Sbjct: 170 TTSLQNLQLSSNRLT 184

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.6 bits (113), Expect = 5e-07
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 9/74 (12%)

Query: 91  NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTL 150
            +S       ++ LD S N    +             +L +L L  N + D    +L   
Sbjct: 203 LLSTLAIPIAVEELDASHNSINVV-------RGPVNVELTILKLQHNNLTD--TAWLLNY 253

Query: 151 TSLTTLNLSYNKIE 164
             L  ++LSYN++E
Sbjct: 254 PGLVEVDLSYNELE 267

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.2 bits (112), Expect = 7e-07
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 7/72 (9%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTS 152
            +FH   +L +L +S N    I ++    +F +   L+ L L  N +    +  L+ + S
Sbjct: 141 GIFHNTPKLTTLSMSNNNLERIEDD----TFQATTSLQNLQLSSNRLTH--VD-LSLIPS 193

Query: 153 LTTLNLSYNKIE 164
           L   N+SYN + 
Sbjct: 194 LFHANVSYNLLS 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.8 bits (111), Expect = 8e-07
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTLTS 152
           F     +Q L +  N    +        F ++  L +L L  N +  S LP    +    
Sbjct: 95  FAYAHTIQKLYMGFNAIRYL----PPHVFQNVPLLTVLVLERNDL--SSLPRGIFHNTPK 148

Query: 153 LTTLNLSYNKIE 164
           LTTL++S N +E
Sbjct: 149 LTTLSMSNNNLE 160

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.9 bits (106), Expect = 4e-06
 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 6/72 (8%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTS 152
             F   + L+ L +S N    +           +  LK+L+L  N++   +         
Sbjct: 272 HPFVKMQRLERLYISNNRLVALNL-----YGQPIPTLKVLDLSHNHLL-HVERNQPQFDR 325

Query: 153 LTTLNLSYNKIE 164
           L  L L +N I 
Sbjct: 326 LENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.5 bits (105), Expect = 6e-06
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 12/72 (16%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTS 152
             F     LQ+L LS N  T +           +  L   N+ +N      L  L    +
Sbjct: 165 DTFQATTSLQNLQLSSNRLTHV-------DLSLIPSLFHANVSYNL-----LSTLAIPIA 212

Query: 153 LTTLNLSYNKIE 164
           +  L+ S+N I 
Sbjct: 213 VEELDASHNSIN 224

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 8/70 (11%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
             P   L+ LDLS N    +  N          +L+ L L  N +    L  L+T  +L 
Sbjct: 297 GQPIPTLKVLDLSHNHLLHVERN-----QPQFDRLENLYLDHNSI--VTLK-LSTHHTLK 348

Query: 155 TLNLSYNKIE 164
            L LS+N  +
Sbjct: 349 NLTLSHNDWD 358

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 91  NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTL 150
           + +    +  L  +DLS N    I     Y  F  +++L+ L +  N +  ++  Y   +
Sbjct: 240 DTAWLLNYPGLVEVDLSYNELEKI----MYHPFVKMQRLERLYISNNRLV-ALNLYGQPI 294

Query: 151 TSLTTLNLSYNKIE 164
            +L  L+LS+N + 
Sbjct: 295 PTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 8/74 (10%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP--YLNTL 150
           +L   F +++ L+L++     I       +F     ++ L +GFN +    LP      +
Sbjct: 63  ALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAI--RYLPPHVFQNV 116

Query: 151 TSLTTLNLSYNKIE 164
             LT L L  N + 
Sbjct: 117 PLLTVLVLERNDLS 130

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 10/75 (13%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFN---YVNDSILPYLNT 149
            +F     L  L L  N  + +        F +  +L  L++  N    + D        
Sbjct: 111 HVFQNVPLLTVLVLERNDLSSL----PRGIFHNTPKLTTLSMSNNNLERIEDDTF---QA 163

Query: 150 LTSLTTLNLSYNKIE 164
            TSL  L LS N++ 
Sbjct: 164 TTSLQNLQLSSNRLT 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 7/72 (9%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTS 152
            +FH   +L +L +S N    I +    D+F +   L+ L L  N +    +  L+ + S
Sbjct: 135 GIFHNTPKLTTLSMSNNNLERIED----DTFQATTSLQNLQLSSNRLTH--VD-LSLIPS 187

Query: 153 LTTLNLSYNKIE 164
           L   N+SYN + 
Sbjct: 188 LFHANVSYNLLS 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.0 bits (112), Expect = 6e-07
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 8/74 (10%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTL 150
             F     +Q L +  N    +        F ++  L +L L  N +  S LP    +  
Sbjct: 87  YAFAYAHTIQKLYMGFNAIRYLPP----HVFQNVPLLTVLVLERNDL--SSLPRGIFHNT 140

Query: 151 TSLTTLNLSYNKIE 164
             LTTL++S N +E
Sbjct: 141 PKLTTLSMSNNNLE 154

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.6 bits (111), Expect = 8e-07
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 9/74 (12%)

Query: 91  NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTL 150
            +S       ++ LD S N    +             +L +L L  N + D    +L   
Sbjct: 197 LLSTLAIPIAVEELDASHNSINVV-------RGPVNVELTILKLQHNNLTD--TAWLLNY 247

Query: 151 TSLTTLNLSYNKIE 164
             L  ++LSYN++E
Sbjct: 248 PGLVEVDLSYNELE 261

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 12/71 (16%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTS 152
             F     LQ+L LS N  T +           +  L   N+ +N      L  L    +
Sbjct: 159 DTFQATTSLQNLQLSSNRLTHV-------DLSLIPSLFHANVSYNL-----LSTLAIPIA 206

Query: 153 LTTLNLSYNKI 163
           +  L+ S+N I
Sbjct: 207 VEELDASHNSI 217

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 6/72 (8%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTS 152
             F   + L+ L +S N    +           +  LK+L+L  N++   +         
Sbjct: 266 HPFVKMQRLERLYISNNRLVALNL-----YGQPIPTLKVLDLSHNHL-LHVERNQPQFDR 319

Query: 153 LTTLNLSYNKIE 164
           L  L L +N I 
Sbjct: 320 LENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 8/70 (11%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
             P   L+ LDLS N    +  N          +L+ L L  N +    L  L+T  +L 
Sbjct: 291 GQPIPTLKVLDLSHNHLLHVERN-----QPQFDRLENLYLDHNSI--VTLK-LSTHHTLK 342

Query: 155 TLNLSYNKIE 164
            L LS+N  +
Sbjct: 343 NLTLSHNDWD 352

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTLTSLTT 155
            + LQ L + EN  T + ++     F  L Q+ ++ LG N +  S +       +  L+ 
Sbjct: 120 PKTLQELRVHENEITKVRKS----VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175

Query: 156 LNLSYNKI 163
           + ++   I
Sbjct: 176 IRIADTNI 183

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 7/70 (10%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
           F   + L +L L  N  + I       +F  L +L+ L L  N +    LP      +L 
Sbjct: 72  FKNLKNLHTLILINNKISKISPG----AFAPLVKLERLYLSKNQL--KELP-EKMPKTLQ 124

Query: 155 TLNLSYNKIE 164
            L +  N+I 
Sbjct: 125 ELRVHENEIT 134

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 5/70 (7%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
                 L  L LS N  + +       S  +   L+ L+L  N +   +   L     + 
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNG----SLANTPHLRELHLNNNKL-VKVPGGLADHKYIQ 266

Query: 155 TLNLSYNKIE 164
            + L  N I 
Sbjct: 267 VVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.9 bits (112), Expect = 6e-07
 Identities = 10/72 (13%), Positives = 19/72 (26%), Gaps = 4/72 (5%)

Query: 95  FHPFEELQSLDLSENWFTGIYEN--RAYDSFGSLKQLKMLNLGFNYVNDSILP--YLNTL 150
               + +Q + L  N  + I  N                ++L  N V    +       +
Sbjct: 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318

Query: 151 TSLTTLNLSYNK 162
                + L   K
Sbjct: 319 YVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY-LNTLTSLTTL 156
             +   LDL  N  T I +      F +LK L  L L  N ++  I P     L  L  L
Sbjct: 51  PPDTALLDLQNNKITEIKDG----DFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERL 105

Query: 157 NLSYNKIE 164
            LS N+++
Sbjct: 106 YLSKNQLK 113

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 8/69 (11%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTLTSLTT 155
              L  L L  N  T +       S   L  L  L L FN +  S +    L     L  
Sbjct: 191 PPSLTELHLDGNKITKVDAA----SLKGLNNLAKLGLSFNSI--SAVDNGSLANTPHLRE 244

Query: 156 LNLSYNKIE 164
           L+L+ NK+ 
Sbjct: 245 LHLNNNKLV 253

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 7/73 (9%)

Query: 93  SLFHPFEELQSLDLSENWFTGIY-ENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLT 151
           S+F+   ++  ++L  N       EN A   F  +K+L  + +    +  + +P      
Sbjct: 139 SVFNGLNQMIVVELGTNPLKSSGIENGA---FQGMKKLSYIRIADTNI--TTIP-QGLPP 192

Query: 152 SLTTLNLSYNKIE 164
           SLT L+L  NKI 
Sbjct: 193 SLTELHLDGNKIT 205

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 11/76 (14%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYV----NDSILP--YLN 148
                 L+ L L+ N    +            K ++++ L  N +    ++   P  Y  
Sbjct: 236 LANTPHLRELHLNNNKLVKVPGG-----LADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 290

Query: 149 TLTSLTTLNLSYNKIE 164
              S + ++L  N ++
Sbjct: 291 KKASYSGVSLFSNPVQ 306

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 8/74 (10%)

Query: 91  NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTL 150
           +++      ++  L+LS N    +       +   L+ +K L+L    + D  +  L  L
Sbjct: 77  DLAPLKNLTKITELELSGNPLKNV------SAIAGLQSIKTLDLTSTQITD--VTPLAGL 128

Query: 151 TSLTTLNLSYNKIE 164
           ++L  L L  N+I 
Sbjct: 129 SNLQVLYLDLNQIT 142

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 91  NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTL 150
           +       + + +L       T I      +    L  L  L L  N + D  L  L  L
Sbjct: 33  DTVTQADLDGITTLSAFGTGVTTI------EGVQYLNNLIGLELKDNQITD--LAPLKNL 84

Query: 151 TSLTTLNLSYNKIE 164
           T +T L LS N ++
Sbjct: 85  TKITELELSGNPLK 98

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 8/74 (10%)

Query: 91  NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTL 150
           N+S     + +++LDL+    T +           L  L++L L  N + +  +  L  L
Sbjct: 99  NVSAIAGLQSIKTLDLTSTQITDV------TPLAGLSNLQVLYLDLNQITN--ISPLAGL 150

Query: 151 TSLTTLNLSYNKIE 164
           T+L  L++   ++ 
Sbjct: 151 TNLQYLSIGNAQVS 164

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 8/74 (10%)

Query: 91  NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTL 150
           +++       LQ L L  N  T I           L  L+ L++G   V+D  L  L  L
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQITNI------SPLAGLTNLQYLSIGNAQVSD--LTPLANL 172

Query: 151 TSLTTLNLSYNKIE 164
           + LTTL    NKI 
Sbjct: 173 SKLTTLKADDNKIS 186

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           LQ L +     + +          +L +L  L    N ++D  +  L +L +L  ++L  
Sbjct: 153 LQYLSIGNAQVSDL------TPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKN 204

Query: 161 NKIE 164
           N+I 
Sbjct: 205 NQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 8/67 (11%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLN 157
                 +   ++  T         +   L  +  L+     V    +  +  L +L  L 
Sbjct: 18  LANAIKIAAGKSNVTDT------VTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLE 69

Query: 158 LSYNKIE 164
           L  N+I 
Sbjct: 70  LKDNQIT 76

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.5 bits (103), Expect = 8e-06
 Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 8/73 (10%)

Query: 91  NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTL 150
           +++      +L +L   +N  + I          SL  L  ++L  N ++D  +  L   
Sbjct: 165 DLTPLANLSKLTTLKADDNKISDI------SPLASLPNLIEVHLKNNQISD--VSPLANT 216

Query: 151 TSLTTLNLSYNKI 163
           ++L  + L+   I
Sbjct: 217 SNLFIVTLTNQTI 229

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY-LNTLT 151
           S+F     L  LD+S               F  L  L++L +  N   ++ LP     L 
Sbjct: 120 SVFLSLRNLIYLDISHTHTRVA----FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175

Query: 152 SLTTLNLSYNKIE 164
           +LT L+LS  ++E
Sbjct: 176 NLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP--YLNTLTSLTT 155
                 L+L  N    +        F  L QL  L+L  N ++            TSL  
Sbjct: 27  PSSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82

Query: 156 LNLSYNKI 163
           L+LS+N +
Sbjct: 83  LDLSFNGV 90

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 6/72 (8%)

Query: 94  LFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY-LNTLTS 152
           +F     L  LDLS+     +       +F SL  L++LN+  N    S+  +    L S
Sbjct: 170 IFTELRNLTFLDLSQCQLEQLSPT----AFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNS 224

Query: 153 LTTLNLSYNKIE 164
           L  L+ S N I 
Sbjct: 225 LQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTLTS 152
           F   E+L+ LD   +    + E      F SL+ L  L++   +    +      N L+S
Sbjct: 97  FLGLEQLEHLDFQHSNLKQMSEFSV---FLSLRNLIYLDISHTHT--RVAFNGIFNGLSS 151

Query: 153 LTTLNLSYNKI 163
           L  L ++ N  
Sbjct: 152 LEVLKMAGNSF 162

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 5/71 (7%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY-LNTLTSL 153
           F    +L  L LS N  +         S      LK L+L FN      +      L  L
Sbjct: 48  FDKLTQLTKLSLSSNGLSFKGCCS--QSDFGTTSLKYLDLSFN--GVITMSSNFLGLEQL 103

Query: 154 TTLNLSYNKIE 164
             L+  ++ ++
Sbjct: 104 EHLDFQHSNLK 114

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.8 bits (104), Expect = 7e-06
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 9/74 (12%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNY---VNDSILPYLNT 149
           + F+    LQ L++S N F  +        +  L  L++L+   N+        L +   
Sbjct: 193 TAFNSLSSLQVLNMSHNNFFSL----DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF-- 246

Query: 150 LTSLTTLNLSYNKI 163
            +SL  LNL+ N  
Sbjct: 247 PSSLAFLNLTQNDF 260

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 93  SLFHPFEELQSLDLSE-NWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLT 151
             F+    L+ LDL E    + I E     +F  L  L+ LNL     N   +P L  L 
Sbjct: 154 YAFNRIPSLRRLDLGELKRLSYISEG----AFEGLSNLRYLNLAMC--NLREIPNLTPLI 207

Query: 152 SLTTLNLSYNKIE 164
            L  L+LS N + 
Sbjct: 208 KLDELDLSGNHLS 220

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY-LNTLTSLTTL 156
               + L+L EN    I  N    SF  L+ L++L L  N++  +I     N L +L TL
Sbjct: 63  STNTRLLNLHENQIQIIKVN----SFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTL 117

Query: 157 NLSYNKI 163
            L  N++
Sbjct: 118 ELFDNRL 124

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY-LNTLTSL 153
             P  +L  LDLS N  + I       SF  L  L+ L +  + +   I     + L SL
Sbjct: 203 LTPLIKLDELDLSGNHLSAIRPG----SFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSL 257

Query: 154 TTLNLSYNKIE 164
             +NL++N + 
Sbjct: 258 VEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY-LNTLTSL 153
           F    +L+ L L  N    I       +F  +  L+ L+LG       I       L++L
Sbjct: 132 FVYLSKLKELWLRNNPIESI----PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187

Query: 154 TTLNLSYNKI 163
             LNL+   +
Sbjct: 188 RYLNLAMCNL 197

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 12/73 (16%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFN---YVNDSILPYLNTLT 151
           F     L+ L+L+      I       +   L +L  L+L  N    +          L 
Sbjct: 181 FEGLSNLRYLNLAMCNLREI------PNLTPLIKLDELDLSGNHLSAIRPGSFQ---GLM 231

Query: 152 SLTTLNLSYNKIE 164
            L  L +  ++I+
Sbjct: 232 HLQKLWMIQSQIQ 244

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.4 bits (105), Expect = 6e-06
 Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 8/72 (11%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTLTS 152
           F     L+ L LS N    I       +F  L  L  L L  N +  + +P      L+ 
Sbjct: 84  FKHLRHLEILQLSRNHIRTI----EIGAFNGLANLNTLELFDNRL--TTIPNGAFVYLSK 137

Query: 153 LTTLNLSYNKIE 164
           L  L L  N IE
Sbjct: 138 LKELWLRNNPIE 149

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTLTS 152
           F     LQ L + ++    I  N    +F +L+ L  +NL  N +  ++LP+     L  
Sbjct: 227 FQGLMHLQKLWMIQSQIQVIERN----AFDNLQSLVEINLAHNNL--TLLPHDLFTPLHH 280

Query: 153 LTTLNLSYN 161
           L  ++L +N
Sbjct: 281 LERIHLHHN 289

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.4 bits (123), Expect = 2e-08
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 93  SLFHPFEELQSLDLSENWFTG---IYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNT 149
                F  L +LDLS+N   G   +        F +L+ L + N G    +         
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226

Query: 150 LTSLTTLNLSYNKIEGS 166
              L  L+LS+N +  +
Sbjct: 227 RVQLQGLDLSHNSLRDA 243

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.1 bits (117), Expect = 1e-07
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 85  TSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSIL 144
            + S +  +L     +LQ LDLS N            S     QL  LNL F  +   + 
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA---PSCDWPSQLNSLNLSFTGL-KQVP 269

Query: 145 PYLNTLTSLTTLNLSYNKIEG 165
             L     L+ L+LSYN+++ 
Sbjct: 270 KGL--PAKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 15/68 (22%), Positives = 26/68 (38%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L  L+L    +       A         LK+L++   +  +     +    +L+TL+LS 
Sbjct: 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182

Query: 161 NKIEGSRT 168
           N   G R 
Sbjct: 183 NPELGERG 190

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 2/81 (2%)

Query: 85  TSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFN-YVNDSI 143
                ++      F  LQ L L                  +  QL+ L+L  N   + + 
Sbjct: 187 GERGLISALCPLKFPTLQVLALRNAGMETP-SGVCSALAAARVQLQGLDLSHNSLRDAAG 245

Query: 144 LPYLNTLTSLTTLNLSYNKIE 164
            P  +  + L +LNLS+  ++
Sbjct: 246 APSCDWPSQLNSLNLSFTGLK 266

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.9 bits (122), Expect = 3e-08
 Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 7/73 (9%)

Query: 93  SLFHPFEELQSLDLSE-NWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLT 151
             F+    L  LDL E      I    +  +F  L  LK LNLG    N   +P L  L 
Sbjct: 165 YAFNRVPSLMRLDLGELKKLEYI----SEGAFEGLFNLKYLNLGMC--NIKDMPNLTPLV 218

Query: 152 SLTTLNLSYNKIE 164
            L  L +S N   
Sbjct: 219 GLEELEMSGNHFP 231

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY-LNTLTSLTTL 156
               + L+L EN    I  +    +F  L  L++L LG N +   I     N L SL TL
Sbjct: 74  PSNTRYLNLMENNIQMIQAD----TFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTL 128

Query: 157 NLSYNKI 163
            L  N +
Sbjct: 129 ELFDNWL 135

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.4 bits (105), Expect = 5e-06
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY-LNTLTSL 153
             P   L+ L++S N F  I       SF  L  LK L +  + V   I     + L SL
Sbjct: 214 LTPLVGLEELEMSGNHFPEIRPG----SFHGLSSLKKLWVMNSQV-SLIERNAFDGLASL 268

Query: 154 TTLNLSYNKIE 164
             LNL++N + 
Sbjct: 269 VELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.4 bits (105), Expect = 5e-06
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 8/71 (11%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY-LNTLTSL 153
           F     L+ L+L       +       +   L  L+ L +  N+    I P   + L+SL
Sbjct: 192 FEGLFNLKYLNLGMCNIKDM------PNLTPLVGLEELEMSGNHF-PEIRPGSFHGLSSL 244

Query: 154 TTLNLSYNKIE 164
             L +  +++ 
Sbjct: 245 KKLWVMNSQVS 255

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 8/73 (10%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTL 150
             F     L+ L L  N    I       +F  L  L  L L  N++  +++P      L
Sbjct: 93  DTFRHLHHLEVLQLGRNSIRQIEVG----AFNGLASLNTLELFDNWL--TVIPSGAFEYL 146

Query: 151 TSLTTLNLSYNKI 163
           + L  L L  N I
Sbjct: 147 SKLRELWLRNNPI 159

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 8/69 (11%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTLTS 152
           FH    L+ L +  +  + I  N    +F  L  L  LNL  N +  S LP+     L  
Sbjct: 238 FHGLSSLKKLWVMNSQVSLIERN----AFDGLASLVELNLAHNNL--SSLPHDLFTPLRY 291

Query: 153 LTTLNLSYN 161
           L  L+L +N
Sbjct: 292 LVELHLHHN 300

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.5 bits (121), Expect = 5e-08
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 8/73 (10%)

Query: 94  LFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTLT 151
           +F     L  LD+SEN    + +      F  L  LK L +G N +    + +   + L 
Sbjct: 99  VFTGLSNLTKLDISENKIVILLD----YMFQDLYNLKSLEVGDNDL--VYISHRAFSGLN 152

Query: 152 SLTTLNLSYNKIE 164
           SL  L L    + 
Sbjct: 153 SLEQLTLEKCNLT 165

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 10/73 (13%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFN---YVNDSILPYLNTLT 151
           F  F  L+ L+L+EN  + +       +F +L  L+ L L  N    +   +   L   +
Sbjct: 52  FASFPHLEELELNENIVSAV----EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL---S 104

Query: 152 SLTTLNLSYNKIE 164
           +LT L++S NKI 
Sbjct: 105 NLTKLDISENKIV 117

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
                 L  L L       I +     SF  L +LK+L +      D++ P      +LT
Sbjct: 172 LSHLHGLIVLRLRHLNINAIRD----YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT 227

Query: 155 TLNLSYNKIE 164
           +L++++  + 
Sbjct: 228 SLSITHCNLT 237

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY-LNTLTSLTTL 156
             E + LDL +N    + +    D F S   L+ L L  N V  ++ P   N L +L TL
Sbjct: 31  PTETRLLDLGKNRIKTLNQ----DEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTL 85

Query: 157 NLSYNKI 163
            L  N++
Sbjct: 86  GLRSNRL 92

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 94  LFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY-LNTLTS 152
                  L+ L+LS N  + I  +        L +L+ + L    +   + PY    L  
Sbjct: 243 AVRHLVYLRFLNLSYNPISTIEGS----MLHELLRLQEIQLVGGQLA-VVEPYAFRGLNY 297

Query: 153 LTTLNLSYNKIE 164
           L  LN+S N++ 
Sbjct: 298 LRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 6/73 (8%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY-LNTLT 151
            +F     L+SL++ +N    I    ++ +F  L  L+ L L    +  SI    L+ L 
Sbjct: 122 YMFQDLYNLKSLEVGDNDLVYI----SHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLH 176

Query: 152 SLTTLNLSYNKIE 164
            L  L L +  I 
Sbjct: 177 GLIVLRLRHLNIN 189

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 19/97 (19%)

Query: 71  LSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLK 130
           L +++   L     T      ++L        SL ++    T +     Y +   L  L+
Sbjct: 205 LEISHWPYLDTM--TPNCLYGLNL-------TSLSITHCNLTAV----PYLAVRHLVYLR 251

Query: 131 MLNLGFN---YVNDSILPYLNTLTSLTTLNLSYNKIE 164
            LNL +N    +  S+L   + L  L  + L   ++ 
Sbjct: 252 FLNLSYNPISTIEGSML---HELLRLQEIQLVGGQLA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 8/73 (10%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTL 150
           S+ H    LQ + L       +       +F  L  L++LN+  N +  + L     +++
Sbjct: 266 SMLHELLRLQEIQLVGGQLAVVEP----YAFRGLNYLRVLNVSGNQL--TTLEESVFHSV 319

Query: 151 TSLTTLNLSYNKI 163
            +L TL L  N +
Sbjct: 320 GNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 8/72 (11%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTLTS 152
           F     L+ L++S   +         +    L  L  L++    +  + +PY  +  L  
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTP---NCLYGLN-LTSLSITHCNL--TAVPYLAVRHLVY 249

Query: 153 LTTLNLSYNKIE 164
           L  LNLSYN I 
Sbjct: 250 LRFLNLSYNPIS 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 49.7 bits (119), Expect = 6e-08
 Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 8/74 (10%)

Query: 91  NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTL 150
           +    +    +  +  + +    +           L  +  L L  N + D  +  L  L
Sbjct: 38  DAVTQNELNSIDQIIANNSDIKSV------QGIQYLPNVTKLFLNGNKLTD--IKPLANL 89

Query: 151 TSLTTLNLSYNKIE 164
            +L  L L  NK++
Sbjct: 90  KNLGWLFLDENKVK 103

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.4 bits (113), Expect = 4e-07
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 8/65 (12%)

Query: 100 ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLS 159
           +L+SL L  N  + I      +    L QL+ L LG N + D  +  L+ LT L TL+L 
Sbjct: 113 KLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLE 164

Query: 160 YNKIE 164
            N+I 
Sbjct: 165 DNQIS 169

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.6 bits (111), Expect = 8e-07
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 100 ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLS 159
           +L+SL L  N  T I           L +L  L+L  N ++D  +  L  LT L  L LS
Sbjct: 135 QLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLS 186

Query: 160 YNKIE 164
            N I 
Sbjct: 187 KNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.6 bits (111), Expect = 9e-07
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L +L L +N  + I           L +L+ L L  N+++D  L  L  L +L  L L  
Sbjct: 158 LDTLSLEDNQISDI------VPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209

Query: 161 NKI 163
            + 
Sbjct: 210 QEC 212

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 8/74 (10%)

Query: 91  NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTL 150
           ++        +  L L+ N  T I          +LK L  L L  N V D  L  L  L
Sbjct: 60  SVQGIQYLPNVTKLFLNGNKLTDI------KPLANLKNLGWLFLDENKVKD--LSSLKDL 111

Query: 151 TSLTTLNLSYNKIE 164
             L +L+L +N I 
Sbjct: 112 KKLKSLSLEHNGIS 125

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 6/73 (8%)

Query: 91  NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTL 150
           ++       +LQ+L LS+N  + +       +   LK L +L L      +  + + + L
Sbjct: 170 DIVPLAGLTKLQNLYLSKNHISDL------RALAGLKNLDVLELFSQECLNKPINHQSNL 223

Query: 151 TSLTTLNLSYNKI 163
               T+  +   +
Sbjct: 224 VVPNTVKNTDGSL 236

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 5/70 (7%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
              + +L  L L  N    I       S   L  L+ L+L  N +   +   L  L  L 
Sbjct: 213 LLRYSKLYRLGLGHNQIRMIENG----SLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQ 267

Query: 155 TLNLSYNKIE 164
            + L  N I 
Sbjct: 268 VVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.5 bits (111), Expect = 7e-07
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 26/89 (29%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP----------YL 147
              L  L + +N    + +      F  L+ +  + +G N + +S             YL
Sbjct: 122 PSSLVELRIHDNRIRKVPKG----VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYL 177

Query: 148 ------------NTLTSLTTLNLSYNKIE 164
                       +   +L  L+L +NKI+
Sbjct: 178 RISEAKLTGIPKDLPETLNELHLDHNKIQ 206

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY-LNTLTSLTTL 156
             +   LDL  N  + + ++     F  L+ L  L L  N ++  I     + L  L  L
Sbjct: 53  SPDTTLLDLQNNDISELRKD----DFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKL 107

Query: 157 NLSYNKIE 164
            +S N + 
Sbjct: 108 YISKNHLV 115

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTLTSLTT 155
            E L  L L  N    I             +L  L LG N +   ++    L+ L +L  
Sbjct: 192 PETLNELHLDHNKIQAIELE----DLLRYSKLYRLGLGHNQI--RMIENGSLSFLPTLRE 245

Query: 156 LNLSYNKIE 164
           L+L  NK+ 
Sbjct: 246 LHLDNNKLS 254

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
           F   + L +L L  N  + I+E     +F  L++L+ L +  N++    +P  N  +SL 
Sbjct: 74  FKGLQHLYALVLVNNKISKIHEK----AFSPLRKLQKLYISKNHL--VEIP-PNLPSSLV 126

Query: 155 TLNLSYNKI 163
            L +  N+I
Sbjct: 127 ELRIHDNRI 135

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 11/76 (14%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND------SILPYLN 148
                 L+ L L  N  + +           LK L+++ L  N +          + +  
Sbjct: 237 LSFLPTLRELHLDNNKLSRVPAG-----LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291

Query: 149 TLTSLTTLNLSYNKIE 164
                  ++L  N + 
Sbjct: 292 KRAYYNGISLFNNPVP 307

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 8/67 (11%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLN 157
              +Q+ +   +    +              LK L+L  N ++D  L  L  LT L  L+
Sbjct: 40  LSGVQNFNGDNSNIQSL------AGMQFFTNLKELHLSHNQISD--LSPLKDLTKLEELS 91

Query: 158 LSYNKIE 164
           ++ N+++
Sbjct: 92  VNRNRLK 98

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 8/67 (11%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLN 157
                  +L +   T +       S   L  ++  N   + +    L  +   T+L  L+
Sbjct: 18  LANAVKQNLGKQSVTDL------VSQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELH 69

Query: 158 LSYNKIE 164
           LS+N+I 
Sbjct: 70  LSHNQIS 76

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.6 bits (111), Expect = 7e-07
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L  L L  N           DS   LK L++L++  N +    +  L  L+ L  L+L  
Sbjct: 108 LSRLFLDNNELRDT------DSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHG 159

Query: 161 NKIE 164
           N+I 
Sbjct: 160 NEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 8/63 (12%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L+ L +  N    I         G L +L++L+L  N + +     L  L  +  ++L+ 
Sbjct: 130 LEILSIRNNKLKSI------VMLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTG 181

Query: 161 NKI 163
            K 
Sbjct: 182 QKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 9/64 (14%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L+ L ++ N    +       +      L  L L  N + D     L  L +L  L++  
Sbjct: 87  LEELSVNRNRLKNL-------NGIPSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRN 137

Query: 161 NKIE 164
           NK++
Sbjct: 138 NKLK 141

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 9/74 (12%)

Query: 91  NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTL 150
           +++    F  L+ L LS N  + +           L +L+ L++  N + +  L  + + 
Sbjct: 55  SLAGMQFFTNLKELHLSHNQISDL------SPLKDLTKLEELSVNRNRLKN--LNGIPSA 106

Query: 151 TSLTTLNLSYNKIE 164
             L+ L L  N++ 
Sbjct: 107 C-LSRLFLDNNELR 119

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 2/40 (5%)

Query: 125 SLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164
            L      NLG   V D  L     L+ +   N   + I+
Sbjct: 17  GLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ 54

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.1 bits (117), Expect = 1e-07
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND-SILPYLNTLTSL 153
           F   +EL+ LDLS N    I       S      LK L+L FN  +   I      ++ L
Sbjct: 65  FKFNQELEYLDLSHNKLVKI-------SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQL 117

Query: 154 TTLNLSYNKI 163
             L LS   +
Sbjct: 118 KFLGLSTTHL 127

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.2 bits (112), Expect = 7e-07
 Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 14/107 (13%)

Query: 58  GVMCNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYEN 117
               + T    + L +N   +LK   + +     M        LQ LD+S+N  +     
Sbjct: 342 ENCGHLTELETLILQMN---QLKELSKIAEMTTQMK------SLQQLDISQNSVSYD--- 389

Query: 118 RAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164
                    K L  LN+  N + D+I   L     +  L+L  NKI+
Sbjct: 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
                +L+ L +S N    +        F   ++L+ L+L  N +    +   +   +L 
Sbjct: 41  ILSLSKLRILIISHNRIQYLDI----SVFKFNQELEYLDLSHNKL--VKIS-CHPTVNLK 93

Query: 155 TLNLSYNKI 163
            L+LS+N  
Sbjct: 94  HLDLSFNAF 102

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 79  LKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNY 138
           +K +  +    ++M           LD S N  T       +++ G L +L+ L L  N 
Sbjct: 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTV----FENCGHLTELETLILQMNQ 359

Query: 139 VN--DSILPYLNTLTSLTTLNLSYNKIE 164
           +     I      + SL  L++S N + 
Sbjct: 360 LKELSKIAEMTTQMKSLQQLDISQNSVS 387

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 4/77 (5%)

Query: 88  SFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYL 147
            F    ++  F  +   + + +    +           +     L+   N + D++    
Sbjct: 289 GFPQSYIYEIFSNMNIKNFTVSGTRMV----HMLCPSKISPFLHLDFSNNLLTDTVFENC 344

Query: 148 NTLTSLTTLNLSYNKIE 164
             LT L TL L  N+++
Sbjct: 345 GHLTELETLILQMNQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 100 ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLS 159
           +   L++S+N+ + ++ +       SL +L++L +  N +    +        L  L+LS
Sbjct: 22  KTTILNISQNYISELWTS----DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77

Query: 160 YNKI 163
           +NK+
Sbjct: 78  HNKL 81

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 38.7 bits (90), Expect = 5e-04
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
            HP   L+ LDLS N F  +   +    FG++ QLK L L   ++  S +  +  L    
Sbjct: 86  CHPTVNLKHLDLSFNAFDALPICKE---FGNMSQLKFLGLSTTHLEKSSVLPIAHLNISK 142

Query: 155 TLNLSYNKI 163
            L +     
Sbjct: 143 VLLVLGETY 151

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP--YLNTLTS 152
           F     L  L L  N F  +       +F  L  L++L L    ++ ++L   +   LTS
Sbjct: 75  FRGLSSLIILKLDYNQFLQL----ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS 130

Query: 153 LTTLNLSYNKIE 164
           L  L L  N I+
Sbjct: 131 LEMLVLRDNNIK 142

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.0 bits (112), Expect = 6e-07
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 6/73 (8%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYL-NTLT 151
           S+F  F +L+ L L++N    I +N    +F  L  L  LNL  N++  SI   +   L 
Sbjct: 293 SVFSHFTDLEQLTLAQNEINKIDDN----AFWGLTHLLKLNLSQNFL-GSIDSRMFENLD 347

Query: 152 SLTTLNLSYNKIE 164
            L  L+LSYN I 
Sbjct: 348 KLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTLTS 152
           F   ++LQ L + +     +  N     F  L  L +L L +N      L     N L +
Sbjct: 50  FSRLQDLQFLKVEQQTPGLVIRNNT---FRGLSSLIILKLDYNQF--LQLETGAFNGLAN 104

Query: 153 LTTLNLSYNKIEGS 166
           L  L L+   ++G+
Sbjct: 105 LEVLTLTQCNLDGA 118

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 8/72 (11%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTLTS 152
           F     L  L+LS+N+   I        F +L +L++L+L +N  +   L       L +
Sbjct: 319 FWGLTHLLKLNLSQNFLGSIDSR----MFENLDKLEVLDLSYN--HIRALGDQSFLGLPN 372

Query: 153 LTTLNLSYNKIE 164
           L  L L  N+++
Sbjct: 373 LKELALDTNQLK 384

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.6 bits (115), Expect = 2e-07
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 8/67 (11%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLN 157
              +  +  + +    +           L  +  L L  N + D  +  L  L +L  L 
Sbjct: 42  LNSIDQIIANNSDIKSV------QGIQYLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLF 93

Query: 158 LSYNKIE 164
           L  NKI+
Sbjct: 94  LDENKIK 100

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.6 bits (115), Expect = 2e-07
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 8/74 (10%)

Query: 91  NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTL 150
           ++        +  L L+ N  T I          +LK L  L L  N + D  L  L  L
Sbjct: 57  SVQGIQYLPNVTKLFLNGNKLTDI------KPLTNLKNLGWLFLDENKIKD--LSSLKDL 108

Query: 151 TSLTTLNLSYNKIE 164
             L +L+L +N I 
Sbjct: 109 KKLKSLSLEHNGIS 122

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.8 bits (113), Expect = 4e-07
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 8/74 (10%)

Query: 91  NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTL 150
           +++      +L+SL L  N  T I           L +L  L+L  N ++D  +  L  L
Sbjct: 123 DINGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISD--IVPLAGL 174

Query: 151 TSLTTLNLSYNKIE 164
           T L  L LS N I 
Sbjct: 175 TKLQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 46.6 bits (110), Expect = 1e-06
 Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 8/67 (11%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLN 157
           F E    +L +   T         +   L  +  +    + +    +  +  L ++T L 
Sbjct: 20  FAETIKDNLKKKSVTDA------VTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 71

Query: 158 LSYNKIE 164
           L+ NK+ 
Sbjct: 72  LNGNKLT 78

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 46.3 bits (109), Expect = 1e-06
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 8/64 (12%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L+SL L  N  + I      +    L QL+ L LG N + D  +  L+ LT L TL+L  
Sbjct: 111 LKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLED 162

Query: 161 NKIE 164
           N+I 
Sbjct: 163 NQIS 166

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.7 bits (105), Expect = 5e-06
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L +L L +N  + I           L +L+ L L  N+++D  L  L  L +L  L L  
Sbjct: 155 LDTLSLEDNQISDI------VPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 206

Query: 161 NKI 163
            + 
Sbjct: 207 QEC 209

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 8/72 (11%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTLTS 152
           FH    L +L L       +        F  L  L+ L L  N +    LP      L +
Sbjct: 101 FHGLGRLHTLHLDRCGLQELGP----GLFRGLAALQYLYLQDNAL--QALPDDTFRDLGN 154

Query: 153 LTTLNLSYNKIE 164
           LT L L  N+I 
Sbjct: 155 LTHLFLHGNRIS 166

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 5/73 (6%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY-LNTLT 151
           + F     L  L L  N    I       +F  L  L+ L+L  N    S+ P   + L 
Sbjct: 50  ASFRACRNLTILWLHSNVLARIDAA----AFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105

Query: 152 SLTTLNLSYNKIE 164
            L TL+L    ++
Sbjct: 106 RLHTLHLDRCGLQ 118

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 94  LFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY-LNTLTS 152
           LF     LQ L L +N    +      D+F  L  L  L L  N +  S+       L S
Sbjct: 124 LFRGLAALQYLYLQDNALQAL----PDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHS 178

Query: 153 LTTLNLSYNKI 163
           L  L L  N++
Sbjct: 179 LDRLLLHQNRV 189

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 6/72 (8%)

Query: 94  LFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY-LNTLTS 152
            F     L  L L  N  + + E     +F  L  L  L L  N V   + P+    L  
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPE----RAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGR 202

Query: 153 LTTLNLSYNKIE 164
           L TL L  N + 
Sbjct: 203 LMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 8/66 (12%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTLTSLTT 155
               Q + L  N  + +       SF + + L +L L  N +  + +       L  L  
Sbjct: 31  PAASQRIFLHGNRISHVPAA----SFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQ 84

Query: 156 LNLSYN 161
           L+LS N
Sbjct: 85  LDLSDN 90

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 8/69 (11%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTLTS 152
           F     L  L L +N    ++ +    +F  L +L  L L  N  N S LP   L  L +
Sbjct: 173 FRGLHSLDRLLLHQNRVAHVHPH----AFRDLGRLMTLYLFAN--NLSALPTEALAPLRA 226

Query: 153 LTTLNLSYN 161
           L  L L+ N
Sbjct: 227 LQYLRLNDN 235

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 8/74 (10%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTL 150
           S       LQ+L L+ N    I E+    SF SL  L+ L+L +NY+  S L       L
Sbjct: 70  SDLQRCVNLQALVLTSNGINTIEED----SFSSLGSLEHLDLSYNYL--SNLSSSWFKPL 123

Query: 151 TSLTTLNLSYNKIE 164
           +SLT LNL  N  +
Sbjct: 124 SSLTFLNLLGNPYK 137

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 8/68 (11%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTLTSLTT 155
            E ++SLDLS N  T I  +           L+ L L  N +  + +     ++L SL  
Sbjct: 51  TEAVKSLDLSNNRITYISNS----DLQRCVNLQALVLTSNGI--NTIEEDSFSSLGSLEH 104

Query: 156 LNLSYNKI 163
           L+LSYN +
Sbjct: 105 LDLSYNYL 112

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 9/76 (11%), Positives = 27/76 (35%), Gaps = 5/76 (6%)

Query: 94  LFHPFEELQSLDLSENWFTGIYENR----AYDSFGSLKQLKMLNLGFNYVNDSILPYLNT 149
                  ++ L+L +      + +       +S       + + +    +   ++  LN 
Sbjct: 217 FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQ 275

Query: 150 LTSLTTLNLSYNKIEG 165
           ++ L  L  S N+++ 
Sbjct: 276 ISGLLELEFSRNQLKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 4/72 (5%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY-LNTLT 151
           S F P   L  L+L  N +  + E      F  L +L++L +G       I       LT
Sbjct: 118 SWFKPLSSLTFLNLLGNPYKTLGETSL---FSHLTKLQILRVGNMDTFTKIQRKDFAGLT 174

Query: 152 SLTTLNLSYNKI 163
            L  L +  + +
Sbjct: 175 FLEELEIDASDL 186

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 11/75 (14%), Positives = 24/75 (32%), Gaps = 6/75 (8%)

Query: 94  LFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYL-NTLTS 152
            F     L+ L++  +            S  S++ +  L L        +L    +  +S
Sbjct: 169 DFAGLTFLEELEIDASDLQSY----EPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSS 223

Query: 153 LTTLNLSYNKIEGSR 167
           +  L L    ++   
Sbjct: 224 VECLELRDTDLDTFH 238

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 5e-07
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 94  LFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSL 153
           L    ++  ++D S+N    +      D F  L++LK L +  N +          L  L
Sbjct: 37  LGATLDQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90

Query: 154 TTLNLSYNKIE 164
           T L L+ N + 
Sbjct: 91  TELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND-SILPYLNTLTSL 153
           F     L++L ++ N    I E        +L  L  L L  N + +   L  L +L SL
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEG----LDQALPDLTELILTNNSLVELGDLDPLASLKSL 115

Query: 154 TTLNLSYNKI 163
           T L +  N +
Sbjct: 116 TYLCILRNPV 125

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 8e-07
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 94  LFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSL 153
           L   F  L+ L L       +       +   L +LK L L  N +   +      L +L
Sbjct: 44  LTAEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 154 TTLNLSYNKIE 164
           T LNLS NK++
Sbjct: 98  THLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 79  LKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNY 138
           L++    +   +++S      +L+ L+LSEN   G  +         L  L  LNL  N 
Sbjct: 51  LEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDM----LAEKLPNLTHLNLSGNK 106

Query: 139 VND-SILPYLNTLTSLTTLNLSYNKI 163
           + D S L  L  L  L +L+L   ++
Sbjct: 107 LKDISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 5/68 (7%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLN 157
              ++ L L         + +          L+ L+L    +    +  L  L  L  L 
Sbjct: 23  PAAVRELVLDNC---KSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLE 77

Query: 158 LSYNKIEG 165
           LS N+I G
Sbjct: 78  LSENRIFG 85

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 10/70 (14%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
                 L ++    N    +              L+ +  G N +    LP L  L  LT
Sbjct: 191 LQNLPFLTAIYADNNSLKKL--------PDLPLSLESIVAGNNIL--EELPELQNLPFLT 240

Query: 155 TLNLSYNKIE 164
           T+    N ++
Sbjct: 241 TIYADNNLLK 250

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 10/70 (14%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
                 L+ +D+  N    +              L+ +  G N +    LP L  L  LT
Sbjct: 149 LQNSSFLKIIDVDNNSLKKL--------PDLPPSLEFIAAGNNQL--EELPELQNLPFLT 198

Query: 155 TLNLSYNKIE 164
            +    N ++
Sbjct: 199 AIYADNNSLK 208

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 10/72 (13%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTS 152
            L      L+ +    N    +          +L  L  +    N +    LP  +   S
Sbjct: 167 KLPDLPPSLEFIAAGNNQLEEL------PELQNLPFLTAIYADNNSL--KKLP--DLPLS 216

Query: 153 LTTLNLSYNKIE 164
           L ++    N +E
Sbjct: 217 LESIVAGNNILE 228

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 20/80 (25%)

Query: 100 ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSI---------------L 144
            L+SL  S N  T + E        SLK L + N     ++D                 L
Sbjct: 92  HLESLVASCNSLTELPE-----LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKL 146

Query: 145 PYLNTLTSLTTLNLSYNKIE 164
           P L   + L  +++  N ++
Sbjct: 147 PELQNSSFLKIIDVDNNSLK 166

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 12/67 (17%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLN 157
            + L  LD+SEN F+G+ E            L  LN   N +    L   +   SL  LN
Sbjct: 276 PQSLTFLDVSENIFSGLSE--------LPPNLYYLNASSNEIRS--LC--DLPPSLEELN 323

Query: 158 LSYNKIE 164
           +S NK+ 
Sbjct: 324 VSNNKLI 330

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 10/64 (15%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L+S+    N    +          +L  L  +    N +    LP  +   SL  LN+  
Sbjct: 217 LESIVAGNNILEEL------PELQNLPFLTTIYADNNLL--KTLP--DLPPSLEALNVRD 266

Query: 161 NKIE 164
           N + 
Sbjct: 267 NYLT 270

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 12/72 (16%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTS 152
           SL      L+ L++S N    +             +L+ L   FN++ +  +P L    +
Sbjct: 311 SLCDLPPSLEELNVSNNKLIEL--------PALPPRLERLIASFNHLAE--VPEL--PQN 358

Query: 153 LTTLNLSYNKIE 164
           L  L++ YN + 
Sbjct: 359 LKQLHVEYNPLR 370

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 27/105 (25%), Positives = 39/105 (37%), Gaps = 6/105 (5%)

Query: 60  MCNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRA 119
           M       +   + +  + L   +  S       L   FEEL+ L       T I     
Sbjct: 3   MGRRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI----- 57

Query: 120 YDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164
             +   L +LK L L  N V+  +        +LT LNLS NKI+
Sbjct: 58  -ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLN 157
             +++ L L  +      E +        ++L+ L+     +    +  L  L  L  L 
Sbjct: 16  PSDVKELVLDNS---RSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKLKKLE 70

Query: 158 LSYNKIEG 165
           LS N++ G
Sbjct: 71  LSDNRVSG 78

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP-YLNTLTSL 153
           F     LQ L   E     +         G LK LK LN+  N +    LP Y + LT+L
Sbjct: 96  FSGLSSLQKLVAVETNLASL----ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 154 TTLNLSYNKI 163
             L+LS NKI
Sbjct: 152 EHLDLSSNKI 161

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTLTS 152
           F  F ELQ LDLS      I +     ++ SL  L  L L  N +    L     + L+S
Sbjct: 48  FFSFPELQVLDLSRCEIQTIED----GAYQSLSHLSTLILTGNPI--QSLALGAFSGLSS 101

Query: 153 LTTLNLSYNKI 163
           L  L      +
Sbjct: 102 LQKLVAVETNL 112

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 8/65 (12%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTLTSLTTLNL 158
            ++LDLS N    +       SF S  +L++L+L    +    +      +L+ L+TL L
Sbjct: 30  TKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLIL 83

Query: 159 SYNKI 163
           + N I
Sbjct: 84  TGNPI 88

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 8/89 (8%)

Query: 76  TRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLG 135
           T  L +         +++   P+  L  L+L     T +         G+L  L  L+L 
Sbjct: 33  TTIL-HLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL------QVDGTLPVLGTLDLS 85

Query: 136 FNYVNDSILPYLNTLTSLTTLNLSYNKIE 164
            N +  S+     TL +LT L++S+N++ 
Sbjct: 86  HNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 8/73 (10%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTL 150
            L      L  LD+S N  T +       +   L +L+ L L  N +    LP   L   
Sbjct: 94  LLGQTLPALTVLDVSFNRLTSL----PLGALRGLGELQELYLKGNEL--KTLPPGLLTPT 147

Query: 151 TSLTTLNLSYNKI 163
             L  L+L+ N +
Sbjct: 148 PKLEKLSLANNNL 160

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 8/73 (10%)

Query: 94  LFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTLT 151
                 ELQ L L  N    +             +L+ L+L  N  N + LP   LN L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPP----GLLTPTPKLEKLSLANN--NLTELPAGLLNGLE 172

Query: 152 SLTTLNLSYNKIE 164
           +L TL L  N + 
Sbjct: 173 NLDTLLLQENSLY 185

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 7/71 (9%)

Query: 94  LFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND-SILPYLNTLTS 152
           L    + L+ L +S N    +           L  L++L +  N + +   +  L  L  
Sbjct: 88  LDAVADTLEELWISYNQIASL------SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK 141

Query: 153 LTTLNLSYNKI 163
           L  L L+ N +
Sbjct: 142 LEDLLLAGNPL 152

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 100 ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLS 159
            L+ L L  N    I EN           L+ L + +N +    L  +  L +L  L +S
Sbjct: 71  NLRILSLGRNLIKKI-EN----LDAVADTLEELWISYNQIAS--LSGIEKLVNLRVLYMS 123

Query: 160 YNKIE 164
            NKI 
Sbjct: 124 NNKIT 128

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.9 bits (106), Expect = 3e-06
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 8/72 (11%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFN-YVNDSILPYLNTLT 151
            +F   ++L+ LD+S N    I       S   +  L+ L+L FN +    +      LT
Sbjct: 94  HVFLFNQDLEYLDVSHNRLQNI-------SCCPMASLRHLDLSFNDFDVLPVCKEFGNLT 146

Query: 152 SLTTLNLSYNKI 163
            LT L LS  K 
Sbjct: 147 KLTFLGLSAAKF 158

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.4 bits (97), Expect = 6e-05
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 18/100 (18%)

Query: 64  TTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSF 123
              + + LS N    L+  D                EL+ L LS N    +        F
Sbjct: 52  PRTKALSLSQNSISELRMPD-----------ISFLSELRVLRLSHNRIRSLDF----HVF 96

Query: 124 GSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKI 163
              + L+ L++  N +    +     + SL  L+LS+N  
Sbjct: 97  LFNQDLEYLDVSHNRL--QNISCCP-MASLRHLDLSFNDF 133

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 37.9 bits (88), Expect = 7e-04
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 4/77 (5%)

Query: 88  SFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYL 147
            F   +L+  F E+    LS +    I+         S      LN   N   DS+    
Sbjct: 318 LFSKEALYSVFAEMNIKMLSISDTPFIHMV----CPPSPSSFTFLNFTQNVFTDSVFQGC 373

Query: 148 NTLTSLTTLNLSYNKIE 164
           +TL  L TL L  N ++
Sbjct: 374 STLKRLQTLILQRNGLK 390

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 6/66 (9%)

Query: 99  EELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNL 158
               +L+L         +         L  L+ + +    +   +   +     L TL L
Sbjct: 81  PGRVALELRSVPLPQFPD-----QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTL 134

Query: 159 SYNKIE 164
           + N + 
Sbjct: 135 ARNPLR 140

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.8 bits (104), Expect = 7e-06
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 14/73 (19%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFN---------YVNDSILPYLNTLT 151
           L++L L+ N    +       S  SL +L+ L++              +         L 
Sbjct: 129 LETLTLARNPLRALPA-----SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 152 SLTTLNLSYNKIE 164
           +L +L L +  I 
Sbjct: 184 NLQSLRLEWTGIR 196

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           LQSL L       +       S  +L+ LK L +  + ++ ++ P ++ L  L  L+L  
Sbjct: 185 LQSLRLEWTGIRSLPA-----SIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRG 238

Query: 161 N 161
            
Sbjct: 239 C 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 8/70 (11%)

Query: 101 LQSLDLSENWF-----TGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY-LNTLTSLT 154
           L+ L +            +    A      L  L+ L L +  +    LP  +  L +L 
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI--RSLPASIANLQNLK 209

Query: 155 TLNLSYNKIE 164
           +L +  + + 
Sbjct: 210 SLKIRNSPLS 219

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.4 bits (105), Expect = 5e-06
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 8/72 (11%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP--YLNTLTS 152
                 L SL LS N    I    + ++F  +  L+ L+L  N++    L     + L +
Sbjct: 60  PTRLTNLHSLLLSHNHLNFI----SSEAFVPVPNLRYLDLSSNHL--HTLDEFLFSDLQA 113

Query: 153 LTTLNLSYNKIE 164
           L  L L  N I 
Sbjct: 114 LEVLLLYNNHIV 125

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.7 bits (103), Expect = 9e-06
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY-LNTLTSL 153
           F P   L+ LDLS N    + E      F  L+ L++L L  N++   +       +  L
Sbjct: 84  FVPVPNLRYLDLSSNHLHTLDE----FLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQL 138

Query: 154 TTLNLSYNKIE 164
             L LS N+I 
Sbjct: 139 QKLYLSQNQIS 149

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFN---YVNDSILPYLNTLT 151
           F   + L+ L L  N    +  N    +F  + QL+ L L  N        ++   N L 
Sbjct: 108 FSDLQALEVLLLYNNHIVVVDRN----AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163

Query: 152 SLTTLNLSYNKIE 164
            L  L+LS NK++
Sbjct: 164 KLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.4 bits (97), Expect = 4e-05
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 7/67 (10%)

Query: 100 ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTLTSLTTLN 157
               LDLS N  + +           L  L  L L  N++  + +       + +L  L+
Sbjct: 40  YTALLDLSHNNLSRLRAEWT---PTRLTNLHSLLLSHNHL--NFISSEAFVPVPNLRYLD 94

Query: 158 LSYNKIE 164
           LS N + 
Sbjct: 95  LSSNHLH 101

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 10/95 (10%)

Query: 70  QLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQL 129
           ++ +++  +L   D      +      P  +L +LD S N  T +            K L
Sbjct: 141 EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL-------DVSQNKLL 193

Query: 130 KMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164
             LN   N +    L  LN    LT L+ S NK+ 
Sbjct: 194 NRLNCDTNNITK--LD-LNQNIQLTFLDCSSNKLT 225

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 10/67 (14%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLN 157
              L  L  + N  T +              L  L    N + +  L  +  LT LT LN
Sbjct: 63  LTGLTKLICTSNNITTL-------DLSQNTNLTYLACDSNKLTN--LD-VTPLTKLTYLN 112

Query: 158 LSYNKIE 164
              NK+ 
Sbjct: 113 CDTNKLT 119

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 9/67 (13%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLN 157
              L SLD   +  T +           L  L  L    N +    L  L+  T+LT L 
Sbjct: 41  LATLTSLDCHNSSITDM------TGIEKLTGLTKLICTSNNITT--LD-LSQNTNLTYLA 91

Query: 158 LSYNKIE 164
              NK+ 
Sbjct: 92  CDSNKLT 98

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 9/63 (14%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L  L L+    T +             +LK L+    ++ D     +  + +L     + 
Sbjct: 320 LVYLYLNNTELTEL-------DVSHNTKLKSLSCVNAHIQD--FSSVGKIPALNNNFEAE 370

Query: 161 NKI 163
            + 
Sbjct: 371 GQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 10/70 (14%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
            +   +L  LD S N  T I           L QL   +   N    + L  ++TL+ LT
Sbjct: 208 LNQNIQLTFLDCSSNKLTEI-------DVTPLTQLTYFDCSVN--PLTELD-VSTLSKLT 257

Query: 155 TLNLSYNKIE 164
           TL+     + 
Sbjct: 258 TLHCIQTDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 10/70 (14%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
               + L  L+   N  T +             QL  L+   N + +  +  +  LT LT
Sbjct: 187 VSQNKLLNRLNCDTNNITKL-------DLNQNIQLTFLDCSSNKLTE--ID-VTPLTQLT 236

Query: 155 TLNLSYNKIE 164
             + S N + 
Sbjct: 237 YFDCSVNPLT 246

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 10/64 (15%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L  L    N  T +           L +L  LN   N +    L  ++    LT LN + 
Sbjct: 87  LTYLACDSNKLTNL-------DVTPLTKLTYLNCDTNKLTK--LD-VSQNPLLTYLNCAR 136

Query: 161 NKIE 164
           N + 
Sbjct: 137 NTLT 140

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 9/70 (12%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
                 L  L+ + N  T I             QL  L+   N         +   T LT
Sbjct: 123 VSQNPLLTYLNCARNTLTEI-------DVSHNTQLTELDCHLN--KKITKLDVTPQTQLT 173

Query: 155 TLNLSYNKIE 164
           TL+ S+NKI 
Sbjct: 174 TLDCSFNKIT 183

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 10/94 (10%)

Query: 71  LSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLK 130
           + L +  +L Y+       +         +L  LD      T +             +L 
Sbjct: 269 IDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL-------DLSQNPKLV 321

Query: 131 MLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164
            L L    + +  L  ++  T L +L+     I+
Sbjct: 322 YLYLNNTELTE--LD-VSHNTKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 9/67 (13%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLN 157
           F    +          I       S   L  L  L+   + + D  +  +  LT LT L 
Sbjct: 20  FASEVAAAFEMQATDTI-------SEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLI 70

Query: 158 LSYNKIE 164
            + N I 
Sbjct: 71  CTSNNIT 77

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 9/67 (13%), Positives = 14/67 (20%), Gaps = 9/67 (13%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLN 157
             +L +L   +     I             QL                 +   T L  L+
Sbjct: 253 LSKLTTLHCIQTDLLEI-------DLTHNTQLIYFQA--EGCRKIKELDVTHNTQLYLLD 303

Query: 158 LSYNKIE 164
                I 
Sbjct: 304 CQAAGIT 310

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 28/126 (22%), Positives = 43/126 (34%), Gaps = 23/126 (18%)

Query: 49  PSDCCDAWEGVMCNATTRRVMQLSLN--------YTRRLKYYDRTSASFMNMSLFHPFEE 100
           P  C        C  TT       LN        YT  L+  +          +F    +
Sbjct: 6   PEKC-------RCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQ 58

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTLTSLTTLNL 158
           L+ ++ S N  T I E     +F     +  + L  N + +  + +     L SL TL L
Sbjct: 59  LRKINFSNNKITDIEEG----AFEGASGVNEILLTSNRLEN--VQHKMFKGLESLKTLML 112

Query: 159 SYNKIE 164
             N+I 
Sbjct: 113 RSNRIT 118

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYL-NTLTSL 153
           F     +  + L+ N    + +++    F  L+ LK L L  N +   +       L+S+
Sbjct: 77  FEGASGVNEILLTSNRLENV-QHKM---FKGLESLKTLMLRSNRIT-CVGNDSFIGLSSV 131

Query: 154 TTLNLSYNKI 163
             L+L  N+I
Sbjct: 132 RLLSLYDNQI 141

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYL-NTLTSL 153
           F   + L++L +++N    +        F  L  L  L L  N +  S+ P + ++LT L
Sbjct: 81  FKELKNLETLWVTDNKLQALPIG----VFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKL 135

Query: 154 TTLNLSYNKI 163
           T L+L YN++
Sbjct: 136 TYLSLGYNEL 145

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 8/72 (11%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP--YLNTLTS 152
           FH   +L+ L L++N    +        F  LK L+ L +  N +    LP    + L +
Sbjct: 57  FHRLTKLRLLYLNDNKLQTLPAG----IFKELKNLETLWVTDNKL--QALPIGVFDQLVN 110

Query: 153 LTTLNLSYNKIE 164
           L  L L  N+++
Sbjct: 111 LAELRLDRNQLK 122

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 8/91 (8%)

Query: 75  YTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNL 134
           +T  L   D       +  LF     L  L+L  N  TGI E  A++       ++ L L
Sbjct: 30  HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEG---ASHIQELQL 85

Query: 135 GFNYVNDSILPY--LNTLTSLTTLNLSYNKI 163
           G N +    +       L  L TLNL  N+I
Sbjct: 86  GENKI--KEISNKMFLGLHQLKTLNLYDNQI 114

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 8/67 (11%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLT 154
           FH       LD+S      +          +LK+L+  +      N   LP L  L +L 
Sbjct: 198 FHGASGPVILDISRTRIHSLPSY----GLENLKKLRARSTY----NLKKLPTLEKLVALM 249

Query: 155 TLNLSYN 161
             +L+Y 
Sbjct: 250 EASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 38.3 bits (89), Expect = 5e-04
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 8/73 (10%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND--SILP-YLNTLT 151
           F  F +L+ +++S+N    + E      F +L +L  + +     N+   I P     L 
Sbjct: 50  FSGFGDLEKIEISQNDVLEVIEADV---FSNLPKLHEIRI--EKANNLLYINPEAFQNLP 104

Query: 152 SLTTLNLSYNKIE 164
           +L  L +S   I+
Sbjct: 105 NLQYLLISNTGIK 117

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 8/72 (11%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTLTS 152
           F P+++L+ +DLS N  + +    A D+F  L+ L  L L  N + +  LP      L S
Sbjct: 52  FSPYKKLRRIDLSNNQISEL----APDAFQGLRSLNSLVLYGNKITE--LPKSLFEGLFS 105

Query: 153 LTTLNLSYNKIE 164
           L  L L+ NKI 
Sbjct: 106 LQLLLLNANKIN 117

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 8/65 (12%)

Query: 102 QSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTLTSLTTLNLS 159
             + L +N    I       +F   K+L+ ++L  N +  S L       L SL +L L 
Sbjct: 35  TEIRLEQNTIKVIPPG----AFSPYKKLRRIDLSNNQI--SELAPDAFQGLRSLNSLVLY 88

Query: 160 YNKIE 164
            NKI 
Sbjct: 89  GNKIT 93

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYL-NTLTSL 153
           F     L SL L  N  T +        F  L  L++L L  N +N  +       L +L
Sbjct: 76  FQGLRSLNSLVLYGNKITEL----PKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNL 130

Query: 154 TTLNLSYNKI 163
             L+L  NK+
Sbjct: 131 NLLSLYDNKL 140

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 7/72 (9%)

Query: 99  EELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND----SILPYLNTLTSLT 154
            ++QSLD+     +   + R  +    L+Q +++ L    + +     I   L    +L 
Sbjct: 3   LDIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 59

Query: 155 TLNLSYNKIEGS 166
            LNL  N++   
Sbjct: 60  ELNLRSNELGDV 71

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 13/80 (16%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSL----KQLKMLNLGFNYVNDSILPYL- 147
           +L  P  +L+SL +    FT          F S+    + L  L +  N + D+ +  L 
Sbjct: 307 TLLEPGCQLESLWVKSCSFT----AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362

Query: 148 ----NTLTSLTTLNLSYNKI 163
                  + L  L L+   +
Sbjct: 363 QGLGQPGSVLRVLWLADCDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 38.0 bits (89), Expect = 8e-04
 Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 5/76 (6%)

Query: 93  SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYL----- 147
            L HP   L++L + E   T            + + LK L+L  N + D     L     
Sbjct: 250 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL 309

Query: 148 NTLTSLTTLNLSYNKI 163
                L +L +     
Sbjct: 310 EPGCQLESLWVKSCSF 325

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 37.6 bits (88), Expect = 9e-04
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 94  LFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYL-----N 148
           L  P  ++Q L L     TG        +  +L  L+ L+L  N + D+ L  L     +
Sbjct: 80  LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD 139

Query: 149 TLTSLTTLNLSYNKI 163
               L  L L Y  +
Sbjct: 140 PQCRLEKLQLEYCSL 154

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 12/75 (16%)

Query: 100 ELQSLDLSENWFTGIYENRAYDSFGSL-------KQLKMLNLGFNYVND----SILPYLN 148
           +L+  + S+  FTG  ++   ++   L        +L  + L  N         ++ +L+
Sbjct: 61  DLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 149 TLTSLTTLNLSYNKI 163
             T L  L L  N +
Sbjct: 120 KHTPLEHLYLHNNGL 134

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 12/74 (16%)

Query: 101 LQSLDLSENWFTGIYENRA-YDSFGSLKQLKMLNLGFNYVND----------SILPYLNT 149
           ++ + LS N   G    R   ++  S K L++      +              +L  L  
Sbjct: 34  VKEIVLSGNTI-GTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK 92

Query: 150 LTSLTTLNLSYNKI 163
              L T+ LS N  
Sbjct: 93  CPKLHTVRLSDNAF 106

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 12/76 (15%), Positives = 22/76 (28%), Gaps = 13/76 (17%)

Query: 101 LQSLDLSENWFT---------GIYENRAYDSFGSLKQLKMLNLGFNYVND----SILPYL 147
           L+ L L  N             + E        +   L+ +  G N + +          
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183

Query: 148 NTLTSLTTLNLSYNKI 163
            +   L T+ +  N I
Sbjct: 184 QSHRLLHTVKMVQNGI 199

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 7/69 (10%)

Query: 101 LQSLDLSENWFT--GIYENRAYDSFGSLKQLKMLNLGFNYVND----SILPYLNTLTSLT 154
           L ++ + +N     GI E+   +     ++LK+L+L  N        ++   L +  +L 
Sbjct: 189 LHTVKMVQNGIRPEGI-EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247

Query: 155 TLNLSYNKI 163
            L L+   +
Sbjct: 248 ELGLNDCLL 256

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 7/77 (9%)

Query: 94  LFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND-------SILPY 146
                  + SL+L  N   G           SLK L+ + L ++ V +       ++   
Sbjct: 220 FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAA 279

Query: 147 LNTLTSLTTLNLSYNKI 163
              +  +  ++ +  +I
Sbjct: 280 FPNIQKIILVDKNGKEI 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 18/80 (22%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSI--LPYLN------- 148
             EL++L++S N  T +           L +L + +    ++      L  L        
Sbjct: 80  PPELRTLEVSGNQLTSLPV-----LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT 134

Query: 149 ----TLTSLTTLNLSYNKIE 164
                   L  L++S N++ 
Sbjct: 135 SLPVLPPGLQELSVSDNQLA 154

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 12/67 (17%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLN 157
              LQ L +S+N    +           L +L   N     +           + L  L+
Sbjct: 140 PPGLQELSVSDNQLASLPA-----LPSELCKLWAYNNQLTSLPMLP-------SGLQELS 187

Query: 158 LSYNKIE 164
           +S N++ 
Sbjct: 188 VSDNQLA 194

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 12/64 (18%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           LQ L +S+N    +           L +L   N          LP L   + L  L +S 
Sbjct: 183 LQELSVSDNQLASLPT-----LPSELYKLWAYNNRLTS-----LPAL--PSGLKELIVSG 230

Query: 161 NKIE 164
           N++ 
Sbjct: 231 NRLT 234

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 38.0 bits (88), Expect = 8e-04
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 12/64 (18%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L+ L +S N  T +             +LK L +  N +  + LP     + L +L++  
Sbjct: 223 LKELIVSGNRLTSL--------PVLPSELKELMVSGNRL--TSLP--MLPSGLLSLSVYR 270

Query: 161 NKIE 164
           N++ 
Sbjct: 271 NQLT 274

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 38.0 bits (88), Expect = 8e-04
 Identities = 9/67 (13%), Positives = 22/67 (32%), Gaps = 9/67 (13%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLN 157
              + +L + +N  T +             +L+ L +  N +  S+      L  L+  +
Sbjct: 60  PAHITTLVIPDNNLTSLPA--------LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFS 110

Query: 158 LSYNKIE 164
                + 
Sbjct: 111 NPLTHLP 117

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDS----ILPYLNTLTSL 153
           F  L+ L + +           +     L QL+ +++    + D     +L +++ +  L
Sbjct: 251 FPNLKWLGIVDAEEQN-VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHL 309

Query: 154 TTLNLSYNKI 163
             +N+ YN +
Sbjct: 310 KFINMKYNYL 319

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 95  FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTLTS 152
              ++ L  +DLS N  + +       SF ++ QL  L L +N +    +P    + L S
Sbjct: 50  LSNYKHLTLIDLSNNRISTLSN----QSFSNMTQLLTLILSYNRL--RCIPPRTFDGLKS 103

Query: 153 LTTLNLSYNKI 163
           L  L+L  N I
Sbjct: 104 LRLLSLHGNDI 114

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 12/64 (18%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
           L+ ++   N  T + E            L++L++  N +    LP      SL  L++S 
Sbjct: 142 LEYINADNNQLTMLPE--------LPTSLEVLSVRNNQLTF--LP--ELPESLEALDVST 189

Query: 161 NKIE 164
           N +E
Sbjct: 190 NLLE 193

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 95  FHPFEELQSLDLSENW-FTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP-YLNTLTS 152
           F     +  + +S +     +  +    SF +L ++  + +        I P  L  L  
Sbjct: 51  FSNLPNISRIYVSIDVTLQQLESH----SFYNLSKVTHIEIRNTRNLTYIDPDALKELPL 106

Query: 153 LTTLNLSYNKIE 164
           L  L +    ++
Sbjct: 107 LKFLGIFNTGLK 118

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 37.8 bits (87), Expect = 8e-04
 Identities = 21/116 (18%), Positives = 38/116 (32%), Gaps = 26/116 (22%)

Query: 49  PSDCCDAWEGVMCNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSE 108
           P  CC        + ++       L  TR          +  ++      E L  L +  
Sbjct: 2   PDACC-------PHGSS------GLRCTRDG--------ALDSLHHLPGAENLTELYIEN 40

Query: 109 NWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY-LNTLTSLTTLNLSYNKI 163
                  E R       L +L+ L +  + +   + P   +    L+ LNLS+N +
Sbjct: 41  QQHLQHLELRD---LRGLGELRNLTIVKSGL-RFVAPDAFHFTPRLSRLNLSFNAL 92

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	170
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.88
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.81
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.79
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.75
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.7
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.59
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.55
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.54
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.54
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.51
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.5
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.49
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.49
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.46
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.45
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.43
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.42
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.42
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.41
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.41
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.39
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.39
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.36
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.35
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.34
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.34
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.32
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.32
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.31
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.3
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.29
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.29
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.28
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.28
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.28
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.28
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.26
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.25
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.24
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.24
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.24
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.24
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.22
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.21
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.19
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.19
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.19
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.19
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.17
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.17
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.1
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.1
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.1
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.03
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.02
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.01
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.99
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.98
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.95
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.94
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.93
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.92
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.9
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.89
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.87
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.85
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.82
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.78
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.78
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.77
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.76
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.68
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.68
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.66
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.65
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.63
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.62
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.61
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.6
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.6
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.59
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.56
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.54
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.54
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.52
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.49
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.48
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.41
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.36
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.32
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.31
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.25
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.02
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.0
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.81
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.64
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.62
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.55
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.53
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.52
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.49
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.25
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.11
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.85
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.49
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.26
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.09
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.65
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.54
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.52
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.12
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	94.43
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.15
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	93.82
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	93.73
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	92.04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.88  E-value=1.1e-22  Score=158.97  Aligned_cols=144  Identities=24%  Similarity=0.432  Sum_probs=111.4

Q ss_pred             CCcHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCceEecCCC--CCeEEeecCCcCccce--ec
Q 038455            9 ACLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCD-AWEGVMCNATT--RRVMQLSLNYTRRLKY--YD   83 (170)
Q Consensus         9 ~~~~~~~~aL~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~~~c~-~w~gv~c~~~~--~~v~~L~L~~~~~l~~--~~   83 (170)
                      .|.+.|++||++||+++.+|.       .+.+|..     +.+||. .|.||.|+...  ++|+.|+|+++. +++  ..
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-------~l~~W~~-----~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~-l~~~~~~   68 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-------TLSSWLP-----TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN-LPKPYPI   68 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-------GGTTCCT-----TSCTTTTCSTTEEECCSSSCCCEEEEEEECCC-CSSCEEC
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-------cccCCCC-----CCCCCcCCCcceEeCCCCCCceEEEEECCCCC-ccCCccc
Confidence            589999999999999997664       5789986     467774 39999997533  799999999887 554  21


Q ss_pred             C--------------C---CCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhh
Q 038455           84 R--------------T---SASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY  146 (170)
Q Consensus        84 ~--------------~---~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~  146 (170)
                      +              .   .+....+..|..+++|++|++++|.+++.+|.    .+..+++|++|++++|.+.+.+|..
T Consensus        69 ~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~  144 (313)
T 1ogq_A           69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD----FLSQIKTLVTLDFSYNALSGTLPPS  144 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG----GGGGCTTCCEEECCSSEEESCCCGG
T ss_pred             ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH----HHhCCCCCCEEeCCCCccCCcCChH
Confidence            1              1   11223355677788888888888888777777    7888888888888888888888888


Q ss_pred             ccCCCCCCEEeCCCCcCcccCCC
Q 038455          147 LNTLTSLTTLNLSYNKIEGSRTK  169 (170)
Q Consensus       147 ~~~l~~L~~L~L~~N~l~g~iP~  169 (170)
                      +..+++|++|++++|+++|.+|.
T Consensus       145 ~~~l~~L~~L~L~~N~l~~~~p~  167 (313)
T 1ogq_A          145 ISSLPNLVGITFDGNRISGAIPD  167 (313)
T ss_dssp             GGGCTTCCEEECCSSCCEEECCG
T ss_pred             HhcCCCCCeEECcCCcccCcCCH
Confidence            88888888888888888877774

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.81  E-value=5.1e-20  Score=159.13  Aligned_cols=145  Identities=28%  Similarity=0.375  Sum_probs=113.1

Q ss_pred             cccCCcHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEecCCCCCeEEeecCCcCcccee---
Q 038455            6 GYKACLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVMCNATTRRVMQLSLNYTRRLKYY---   82 (170)
Q Consensus         6 ~~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~~~c~~w~gv~c~~~~~~v~~L~L~~~~~l~~~---   82 (170)
                      +++++.+.|++||++||+++.+|.       .+++|..     +.+||. |.||.|+  .++|+.|+|++.. +.+.   
T Consensus         5 ~~~~~~~~~~~all~~k~~~~~~~-------~l~~W~~-----~~~~C~-w~gv~C~--~~~v~~L~L~~~~-l~g~~~~   68 (768)
T 3rgz_A            5 SPSQSLYREIHQLISFKDVLPDKN-------LLPDWSS-----NKNPCT-FDGVTCR--DDKVTSIDLSSKP-LNVGFSA   68 (768)
T ss_dssp             ---CCHHHHHHHHHHHHTTCSCTT-------SSTTCCT-----TSCGGG-STTEEEE--TTEEEEEECTTSC-CCEEHHH
T ss_pred             ccccCCHHHHHHHHHHHhhCCCcc-------cccCCCC-----CCCCcC-CcceEEC--CCcEEEEECCCCC-cCCccCc
Confidence            344567889999999999997664       6889986     578999 9999997  5799999999887 5543   


Q ss_pred             cC--------------CCCCCC-CCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhc
Q 038455           83 DR--------------TSASFM-NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYL  147 (170)
Q Consensus        83 ~~--------------~~~~~~-~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~  147 (170)
                      ..              ...+.. .+..|..+++|++|+|++|.+.+.+|..  ..++.+++|++|++++|.+.+.+|..+
T Consensus        69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~  146 (768)
T 3rgz_A           69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTL--TSLGSCSGLKFLNVSSNTLDFPGKVSG  146 (768)
T ss_dssp             HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGG--GGGGGCTTCCEEECCSSEEECCSSCCS
T ss_pred             cChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCCh--HHHhCCCCCCEEECcCCccCCcCCHHH
Confidence            11              111111 1256889999999999999999876631  157889999999999999998888765


Q ss_pred             -cCCCCCCEEeCCCCcCcccCC
Q 038455          148 -NTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus       148 -~~l~~L~~L~L~~N~l~g~iP  168 (170)
                       ..+++|++|++++|.+++.+|
T Consensus       147 ~~~l~~L~~L~Ls~n~l~~~~~  168 (768)
T 3rgz_A          147 GLKLNSLEVLDLSANSISGANV  168 (768)
T ss_dssp             CCCCTTCSEEECCSSCCEEETH
T ss_pred             hccCCCCCEEECCCCccCCcCC
Confidence             889999999999999987654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.79  E-value=1.9e-19  Score=152.82  Aligned_cols=144  Identities=19%  Similarity=0.163  Sum_probs=105.3

Q ss_pred             CCcHHHHHHHHHHHhhccCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCC---CceEecCCCCCeEEeecCCcCcc
Q 038455            9 ACLETERTALLAIKSFFISVSDVGYDD------KILPSWVGEDDGMPSDCCDAW---EGVMCNATTRRVMQLSLNYTRRL   79 (170)
Q Consensus         9 ~~~~~~~~aL~~~~~~~~~~~~~~~~~------~~l~~W~~~~~~~~~~~c~~w---~gv~c~~~~~~v~~L~L~~~~~l   79 (170)
                      +....|+.||.+++.++.++.    |.      ....+|+.     +.++|. |   .||.|+. .++|++|+|+++. +
T Consensus        26 ~~~~~d~~aL~~~~~~~~~~~----w~~~~~~~~~~~~W~~-----~~~~c~-w~~~~GV~C~~-~~~V~~L~L~~~~-l   93 (636)
T 4eco_A           26 AEYIKDYLALKEIWDALNGKN----WSQQGFGTQPGANWNF-----NKELDM-WGAQPGVSLNS-NGRVTGLSLEGFG-A   93 (636)
T ss_dssp             CHHHHHHHHHHHHHHHTTGGG----CCCCC------CCCCC-----SSCGGG-TTCCTTEEECT-TCCEEEEECTTSC-C
T ss_pred             hhHHHHHHHHHHHHHHcCCCC----cccCCcCCccCCCCCC-----CCCccc-ccCCCCeEEcC-CCCEEEEEecCcc-c
Confidence            445579999999999997665    21      12347987     578999 9   9999985 4899999999887 4


Q ss_pred             cee--------------cCCCCC---------------------------------------------------------
Q 038455           80 KYY--------------DRTSAS---------------------------------------------------------   88 (170)
Q Consensus        80 ~~~--------------~~~~~~---------------------------------------------------------   88 (170)
                      .+.              ++..+.                                                         
T Consensus        94 ~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~  173 (636)
T 4eco_A           94 SGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQK  173 (636)
T ss_dssp             EEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSC
T ss_pred             CCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccc
Confidence            432              221110                                                         


Q ss_pred             -----------------------CCCCCcCCCCCCCCEEeccCCccCcc-----------------ccCccccccC--CC
Q 038455           89 -----------------------FMNMSLFHPFEELQSLDLSENWFTGI-----------------YENRAYDSFG--SL  126 (170)
Q Consensus        89 -----------------------~~~~~~~~~l~~L~~L~ls~N~l~~~-----------------~p~~~~~~~~--~l  126 (170)
                                             . .|..|+++++|++|+|++|.+++.                 +|.    .++  ++
T Consensus       174 ~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~----~l~~~~l  248 (636)
T 4eco_A          174 SIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE----DLKWDNL  248 (636)
T ss_dssp             CCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----CCCGGGC
T ss_pred             ccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch----hhhhccc
Confidence                                   1 133467778888888888888775                 676    777  88


Q ss_pred             CCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCc-Ccc-cCCC
Q 038455          127 KQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNK-IEG-SRTK  169 (170)
Q Consensus       127 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~-l~g-~iP~  169 (170)
                      ++|++|++++|.+.+.+|..|+++++|++|++++|+ ++| .+|.
T Consensus       249 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~  293 (636)
T 4eco_A          249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD  293 (636)
T ss_dssp             TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH
T ss_pred             CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchH
Confidence            888888888888888888888888888888888887 777 6663

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.75  E-value=2.3e-18  Score=150.65  Aligned_cols=74  Identities=20%  Similarity=0.232  Sum_probs=60.9

Q ss_pred             CCcCCCCCCCCEEeccCCccCc-----------------cccCccccccC--CCCCCCEEECCCCCCCCCChhhccCCCC
Q 038455           92 MSLFHPFEELQSLDLSENWFTG-----------------IYENRAYDSFG--SLKQLKMLNLGFNYVNDSILPYLNTLTS  152 (170)
Q Consensus        92 ~~~~~~l~~L~~L~ls~N~l~~-----------------~~p~~~~~~~~--~l~~L~~L~Ls~N~l~g~~p~~~~~l~~  152 (170)
                      |..|+.|++|+.|+|++|.+++                 .+|.    .++  ++++|+.|+|++|.+.+.+|..|+++++
T Consensus       441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~----~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~  516 (876)
T 4ecn_A          441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE----ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE  516 (876)
T ss_dssp             CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----CCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSS
T ss_pred             hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh----hhhhccCCCCCEEECcCCCCCccChHHHhCCCC
Confidence            3457788888888888888888                 3777    776  8888888998888888888888888888


Q ss_pred             CCEEeCCCCc-Ccc-cCCC
Q 038455          153 LTTLNLSYNK-IEG-SRTK  169 (170)
Q Consensus       153 L~~L~L~~N~-l~g-~iP~  169 (170)
                      |+.|+|++|+ ++| .+|.
T Consensus       517 L~~L~Ls~N~~lsg~~iP~  535 (876)
T 4ecn_A          517 LQSLNIACNRGISAAQLKA  535 (876)
T ss_dssp             CCEEECTTCTTSCHHHHHH
T ss_pred             CCEEECcCCCCcccccchH
Confidence            9999998887 887 6663

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.70  E-value=2.9e-18  Score=134.78  Aligned_cols=138  Identities=13%  Similarity=0.145  Sum_probs=101.3

Q ss_pred             cCCcHHHHHHHHHHHhhcc-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEecC--------CCCCeEEeecCCcCc
Q 038455            8 KACLETERTALLAIKSFFI-SVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVMCNA--------TTRRVMQLSLNYTRR   78 (170)
Q Consensus         8 ~~~~~~~~~aL~~~~~~~~-~~~~~~~~~~~l~~W~~~~~~~~~~~c~~w~gv~c~~--------~~~~v~~L~L~~~~~   78 (170)
                      .++...|+.||++||..+. ++.      .++..|.. ......++|. |.|+.|..        ...+|+.|+|+++. 
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~------~~~~~w~~-~~~~~~~~~~-~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~-   92 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRN------RWHSAWRQ-ANSNNPQIET-RTGRALKATADLLEDATQPGRVALELRSVP-   92 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCT------THHHHHHH-HTTTCTTSCC-SHHHHHHHHHHHHHHHTSTTCCEEEEESSC-
T ss_pred             cccCchHHHHHHHHHHhccCCch------hhhhhhcc-cccccccccc-cCCcchhhhHHHHhcccccceeEEEccCCC-
Confidence            4456779999999999883 554      45678841 0002467899 99999952        34689999999988 


Q ss_pred             cceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeC
Q 038455           79 LKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNL  158 (170)
Q Consensus        79 l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  158 (170)
                      ++.+         +..+..+++|++|++++|.++ .+|.    .+..+++|++|+|++|.+. .+|..++.+++|++|++
T Consensus        93 l~~l---------p~~l~~l~~L~~L~L~~n~l~-~lp~----~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           93 LPQF---------PDQAFRLSHLQHMTIDAAGLM-ELPD----TMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             CSSC---------CSCGGGGTTCSEEEEESSCCC-CCCS----CGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             chhc---------ChhhhhCCCCCEEECCCCCcc-chhH----HHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            4422         344666788888888888887 4676    7778888888888888887 67777888888888888


Q ss_pred             CCCcCcccCCC
Q 038455          159 SYNKIEGSRTK  169 (170)
Q Consensus       159 ~~N~l~g~iP~  169 (170)
                      ++|++.+.+|.
T Consensus       158 ~~n~~~~~~p~  168 (328)
T 4fcg_A          158 RACPELTELPE  168 (328)
T ss_dssp             EEETTCCCCCS
T ss_pred             CCCCCccccCh
Confidence            88777777775

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.59  E-value=1.2e-14  Score=108.62  Aligned_cols=109  Identities=23%  Similarity=0.310  Sum_probs=67.4

Q ss_pred             CCCCCCCCCceEecCC---------CCCeEEeecCCcCccceec--------------CC--CCCCCCCCcCCCCCCCCE
Q 038455           49 PSDCCDAWEGVMCNAT---------TRRVMQLSLNYTRRLKYYD--------------RT--SASFMNMSLFHPFEELQS  103 (170)
Q Consensus        49 ~~~~c~~w~gv~c~~~---------~~~v~~L~L~~~~~l~~~~--------------~~--~~~~~~~~~~~~l~~L~~  103 (170)
                      ....|+ |.+|.|...         ...++.|+|+++. ++.+.              +.  .+..+++..|..+++|++
T Consensus        15 ~~~~Cs-~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~   92 (229)
T 3e6j_A           15 SQCSCS-GTTVDCRSKRHASVPAGIPTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV   92 (229)
T ss_dssp             TTCEEE-TTEEECTTSCCSSCCSCCCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCEEe-CCEeEccCCCcCccCCCCCCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCE
Confidence            367899 999999641         2356778888776 43331              11  112333344556666666


Q ss_pred             EeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455          104 LDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus       104 L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      |+|++|.+++..+.    .|..+++|+.|+|++|+|. .+|..+..+++|++|+|++|+|+
T Consensus        93 L~Ls~N~l~~l~~~----~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A           93 LDLGTNQLTVLPSA----VFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK  148 (229)
T ss_dssp             EECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred             EECCCCcCCccChh----HhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC
Confidence            66666666654444    4566666666666666666 55666666666666666666666

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.55  E-value=3.4e-14  Score=101.59  Aligned_cols=100  Identities=25%  Similarity=0.296  Sum_probs=82.2

Q ss_pred             CCCCCceEecCC---------CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCcccccc
Q 038455           53 CDAWEGVMCNAT---------TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSF  123 (170)
Q Consensus        53 c~~w~gv~c~~~---------~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~  123 (170)
                      |+ |+.+.|...         ...++.|+|+++.         +..+.+..|..+++|++|+|++|+|++..+.    .|
T Consensus         9 C~-~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~---------i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~----~f   74 (170)
T 3g39_A            9 CS-GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQ---------ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG----VF   74 (170)
T ss_dssp             EE-TTEEECTTSCCSSCCSCCCTTCSEEECCSSC---------CCCCCTTTTTTCTTCSEEECCSSCCCCCCTT----TT
T ss_pred             cC-CCEEEeCCCCcCccCccCCCCCcEEEcCCCc---------CCccChhhhcCcccCCEEECCCCCcCccChh----hc
Confidence            67 888888641         2345666666666         3345577899999999999999999987666    78


Q ss_pred             CCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCccc
Q 038455          124 GSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGS  166 (170)
Q Consensus       124 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~  166 (170)
                      ..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+++..
T Consensus        75 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           75 DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             cCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            9999999999999999977777899999999999999999854

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.54  E-value=2.2e-14  Score=104.43  Aligned_cols=102  Identities=29%  Similarity=0.372  Sum_probs=54.6

Q ss_pred             CCCCCceEecCC---------CCCeEEeecCCcCccceecCCCCCCCCC-CcCCCCCCCCEEeccCCccCccccCccccc
Q 038455           53 CDAWEGVMCNAT---------TRRVMQLSLNYTRRLKYYDRTSASFMNM-SLFHPFEELQSLDLSENWFTGIYENRAYDS  122 (170)
Q Consensus        53 c~~w~gv~c~~~---------~~~v~~L~L~~~~~l~~~~~~~~~~~~~-~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~  122 (170)
                      |. |..+.|...         ...++.|+++++. ++.+        .+ ..|..+++|++|+|++|.+++..|.    .
T Consensus         8 C~-~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~-i~~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~   73 (192)
T 1w8a_A            8 CE-GTTVDCTGRGLKEIPRDIPLHTTELLLNDNE-LGRI--------SSDGLFGRLPHLVKLELKRNQLTGIEPN----A   73 (192)
T ss_dssp             EE-TTEEECTTSCCSSCCSCCCTTCSEEECCSCC-CCSB--------CCSCSGGGCTTCCEEECCSSCCCCBCTT----T
T ss_pred             EC-CCEEEcCCCCcCcCccCCCCCCCEEECCCCc-CCcc--------CCccccccCCCCCEEECCCCCCCCcCHh----H
Confidence            66 888888531         1256677777766 3332        22 1245555555555555555554444    4


Q ss_pred             cCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455          123 FGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus       123 ~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      |..+++|+.|+|++|+|++..|..|..+++|++|+|++|++++.+|
T Consensus        74 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  119 (192)
T 1w8a_A           74 FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP  119 (192)
T ss_dssp             TTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT
T ss_pred             cCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH
Confidence            5555555555555555554444445555555555555555554433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.54  E-value=6e-14  Score=100.49  Aligned_cols=98  Identities=24%  Similarity=0.407  Sum_probs=54.0

Q ss_pred             CCCCCceEecCC---------CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCcccccc
Q 038455           53 CDAWEGVMCNAT---------TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSF  123 (170)
Q Consensus        53 c~~w~gv~c~~~---------~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~  123 (170)
                      |+ |.++.|...         ...++.|+++++. ++.        +++..|..+++|++|++++|.+++..+.    .+
T Consensus         7 C~-~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~-l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~   72 (177)
T 2o6r_A            7 CS-GTEIRCNSKGLTSVPTGIPSSATRLELESNK-LQS--------LPHGVFDKLTQLTKLSLSQNQIQSLPDG----VF   72 (177)
T ss_dssp             EE-TTEEECCSSCCSSCCTTCCTTCSEEECCSSC-CCC--------CCTTTTTTCTTCSEEECCSSCCCCCCTT----TT
T ss_pred             eC-CCEEEecCCCCccCCCCCCCCCcEEEeCCCc-ccE--------eCHHHhcCcccccEEECCCCcceEeChh----Hc
Confidence            77 999999641         2356777777766 332        2333445555555555555555543333    34


Q ss_pred             CCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455          124 GSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus       124 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      ..+++|+.|++++|++++..+..+..+++|+.|++++|+++
T Consensus        73 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  113 (177)
T 2o6r_A           73 DKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK  113 (177)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             cCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce
Confidence            55555555555555555444444455555555555555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.51  E-value=1.4e-13  Score=100.89  Aligned_cols=107  Identities=25%  Similarity=0.318  Sum_probs=69.0

Q ss_pred             CCCCCceEecCC---------CCCeEEeecCCcCccceec--------------CCC--CCCCCCCcCCCCCCCCEEecc
Q 038455           53 CDAWEGVMCNAT---------TRRVMQLSLNYTRRLKYYD--------------RTS--ASFMNMSLFHPFEELQSLDLS  107 (170)
Q Consensus        53 c~~w~gv~c~~~---------~~~v~~L~L~~~~~l~~~~--------------~~~--~~~~~~~~~~~l~~L~~L~ls  107 (170)
                      |. |.+|.|...         ..+++.|+++++. ++.+.              +..  +..+++..|..+++|++|+++
T Consensus         7 C~-~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A            7 CS-GTTVECYSQGRTSVPTGIPAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             EE-TTEEECCSSCCSSCCSCCCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             EC-CCEEEecCCCccCCCCCCCCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence            78 999999642         2357788888776 43221              111  123334445666777777777


Q ss_pred             CCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455          108 ENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus       108 ~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g  165 (170)
                      +|.+++..+.    .+..+++|+.|++++|++.+..+..|..+++|+.|++++|++++
T Consensus        85 ~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  138 (208)
T 2o6s_A           85 TNQLQSLPNG----VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS  138 (208)
T ss_dssp             SSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCcCCccCHh----HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce
Confidence            7777665444    56677777777777777775555566777777777777777763

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.50  E-value=2.7e-14  Score=123.36  Aligned_cols=92  Identities=27%  Similarity=0.378  Sum_probs=82.6

Q ss_pred             CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh
Q 038455           66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP  145 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~  145 (170)
                      ..++.|+|+++. +++.        .|..++.++.|+.|+|++|+++|.+|.    .++.+++|+.|+|++|+++|.+|.
T Consensus       632 ~~L~~LdLs~N~-l~g~--------ip~~l~~l~~L~~L~Ls~N~l~g~ip~----~l~~L~~L~~LdLs~N~l~g~ip~  698 (768)
T 3rgz_A          632 GSMMFLDMSYNM-LSGY--------IPKEIGSMPYLFILNLGHNDISGSIPD----EVGDLRGLNILDLSSNKLDGRIPQ  698 (768)
T ss_dssp             BCCCEEECCSSC-CBSC--------CCGGGGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEECCSSCCEECCCG
T ss_pred             ccccEEECcCCc-cccc--------CCHHHhccccCCEEeCcCCccCCCCCh----HHhCCCCCCEEECCCCcccCcCCh
Confidence            356778888877 4433        467789999999999999999999999    999999999999999999999999


Q ss_pred             hccCCCCCCEEeCCCCcCcccCCCC
Q 038455          146 YLNTLTSLTTLNLSYNKIEGSRTKQ  170 (170)
Q Consensus       146 ~~~~l~~L~~L~L~~N~l~g~iP~~  170 (170)
                      .+..++.|++|+|++|+++|.||..
T Consensus       699 ~l~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          699 AMSALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             GGGGCCCCSEEECCSSEEEEECCSS
T ss_pred             HHhCCCCCCEEECcCCcccccCCCc
Confidence            9999999999999999999999963

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.49  E-value=1.3e-13  Score=100.58  Aligned_cols=100  Identities=26%  Similarity=0.337  Sum_probs=69.7

Q ss_pred             CCCCCceEecCC---------CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCcccccc
Q 038455           53 CDAWEGVMCNAT---------TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSF  123 (170)
Q Consensus        53 c~~w~gv~c~~~---------~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~  123 (170)
                      |. |..+.|...         ...++.|+++++. ++        .+ +..|..+++|+.|+|++|.+++..+.    .|
T Consensus        10 C~-~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~-i~--------~i-p~~~~~l~~L~~L~Ls~N~i~~i~~~----~f   74 (193)
T 2wfh_A           10 CL-DTVVRCSNKGLKVLPKGIPRDVTELYLDGNQ-FT--------LV-PKELSNYKHLTLIDLSNNRISTLSNQ----SF   74 (193)
T ss_dssp             EE-TTEEECTTSCCSSCCSCCCTTCCEEECCSSC-CC--------SC-CGGGGGCTTCCEEECCSSCCCCCCTT----TT
T ss_pred             eC-CCEEEcCCCCCCcCCCCCCCCCCEEECCCCc-Cc--------hh-HHHhhcccCCCEEECCCCcCCEeCHh----Hc
Confidence            56 777888531         2356777777766 33        22 25677777788888888877776655    67


Q ss_pred             CCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455          124 GSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus       124 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      ..+++|+.|+|++|+|++..|..|..+++|+.|+|++|+|+ .+|
T Consensus        75 ~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~  118 (193)
T 2wfh_A           75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVP  118 (193)
T ss_dssp             TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCC
T ss_pred             cCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeC
Confidence            77777888888888777666667777777888888777777 344

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.49  E-value=1.9e-13  Score=101.56  Aligned_cols=107  Identities=24%  Similarity=0.294  Sum_probs=72.6

Q ss_pred             CCCCCceEecCC---------CCCeEEeecCCcCccceec--------------CCC--CCCCCCCcCCCCCCCCEEecc
Q 038455           53 CDAWEGVMCNAT---------TRRVMQLSLNYTRRLKYYD--------------RTS--ASFMNMSLFHPFEELQSLDLS  107 (170)
Q Consensus        53 c~~w~gv~c~~~---------~~~v~~L~L~~~~~l~~~~--------------~~~--~~~~~~~~~~~l~~L~~L~ls  107 (170)
                      |. |..|.|...         ...++.|+++++. ++.+.              +..  +..+.+..|..+++|++|+|+
T Consensus        11 C~-~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B           11 CS-NNIVDCRGKGLTEIPTNLPETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             EE-TTEEECTTSCCSSCCSSCCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred             EC-CCEEEcCCCCcCcCCCccCcCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence            67 888888641         2357788888776 44332              111  223345567777777777777


Q ss_pred             CCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455          108 ENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus       108 ~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g  165 (170)
                      +|.++...+.    .|..+++|+.|+|++|+|.+..|..|..+++|+.|+|++|+|++
T Consensus        89 ~N~l~~l~~~----~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  142 (220)
T 2v9t_B           89 GNKITELPKS----LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT  142 (220)
T ss_dssp             SSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCcCCccCHh----HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE
Confidence            7777764444    56777777788888887777777777778888888888888774

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.46  E-value=4.7e-13  Score=99.37  Aligned_cols=110  Identities=20%  Similarity=0.242  Sum_probs=76.8

Q ss_pred             CCCCCceEecCC---------CCCeEEeecCCcCccceecC---------------C--CCCCCCCCcCCCCCCCCEEec
Q 038455           53 CDAWEGVMCNAT---------TRRVMQLSLNYTRRLKYYDR---------------T--SASFMNMSLFHPFEELQSLDL  106 (170)
Q Consensus        53 c~~w~gv~c~~~---------~~~v~~L~L~~~~~l~~~~~---------------~--~~~~~~~~~~~~l~~L~~L~l  106 (170)
                      |. |..+.|...         ...++.|+|+++. ++.+..               .  .+..+.+..|..+++|++|+|
T Consensus        11 C~-~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           11 CE-GTTVDCSNQKLNKIPEHIPQYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL   88 (220)
T ss_dssp             EE-TTEEECCSSCCSSCCSCCCTTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             EC-CCEeEeCCCCcccCccCCCCCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence            66 888888531         1245677777776 544421               1  122344556777888888888


Q ss_pred             cCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455          107 SENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus       107 s~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      ++|.+++..+.    .|..+++|+.|+|++|+|.+..|..|..+++|+.|+|++|++++..|
T Consensus        89 s~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  146 (220)
T 2v70_A           89 TSNRLENVQHK----MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP  146 (220)
T ss_dssp             CSSCCCCCCGG----GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred             CCCccCccCHh----HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence            88888776665    67788888888888888887777788888888888888888886545

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.45  E-value=2.8e-13  Score=98.54  Aligned_cols=90  Identities=30%  Similarity=0.326  Sum_probs=79.2

Q ss_pred             CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh
Q 038455           66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP  145 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~  145 (170)
                      ..++.|+|+++. ++        .+.+..|..+++|++|+|++|++++..+.    .|..+++|+.|+|++|+|++..|.
T Consensus        54 ~~L~~L~Ls~N~-l~--------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~  120 (192)
T 1w8a_A           54 PHLVKLELKRNQ-LT--------GIEPNAFEGASHIQELQLGENKIKEISNK----MFLGLHQLKTLNLYDNQISCVMPG  120 (192)
T ss_dssp             TTCCEEECCSSC-CC--------CBCTTTTTTCTTCCEEECCSCCCCEECSS----SSTTCTTCCEEECCSSCCCEECTT
T ss_pred             CCCCEEECCCCC-CC--------CcCHhHcCCcccCCEEECCCCcCCccCHH----HhcCCCCCCEEECCCCcCCeeCHH
Confidence            467888888887 43        34567899999999999999999998776    799999999999999999998999


Q ss_pred             hccCCCCCCEEeCCCCcCcccCC
Q 038455          146 YLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus       146 ~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      .|..+++|++|+|++|++++..|
T Consensus       121 ~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          121 SFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             SSTTCTTCCEEECTTCCBCCSGG
T ss_pred             HhhcCCCCCEEEeCCCCccCcCc
Confidence            99999999999999999987654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.43  E-value=1.1e-12  Score=94.09  Aligned_cols=86  Identities=27%  Similarity=0.292  Sum_probs=72.2

Q ss_pred             CeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhh
Q 038455           67 RVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY  146 (170)
Q Consensus        67 ~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~  146 (170)
                      .++.|+|+++. +        ..+.+..|..+++|++|+|++|+|++..+.    .|..+++|+.|+|++|+|.+..+..
T Consensus        34 ~L~~L~Ls~N~-l--------~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~----~~~~l~~L~~L~L~~N~l~~l~~~~  100 (174)
T 2r9u_A           34 DKQRLWLNNNQ-I--------TKLEPGVFDHLVNLQQLYFNSNKLTAIPTG----VFDKLTQLTQLDLNDNHLKSIPRGA  100 (174)
T ss_dssp             TCSEEECCSSC-C--------CCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCcEEEeCCCC-c--------cccCHHHhcCCcCCCEEECCCCCCCccChh----HhCCcchhhEEECCCCccceeCHHH
Confidence            45667777766 3        344567899999999999999999996555    6789999999999999999766667


Q ss_pred             ccCCCCCCEEeCCCCcCcc
Q 038455          147 LNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus       147 ~~~l~~L~~L~L~~N~l~g  165 (170)
                      |..+++|+.|+|++|++..
T Consensus       101 ~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A          101 FDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             TTTCTTCSEEECCSSCBCT
T ss_pred             hccccCCCEEEeCCCCccc
Confidence            9999999999999999874

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.42  E-value=7.5e-13  Score=98.26  Aligned_cols=76  Identities=29%  Similarity=0.333  Sum_probs=68.5

Q ss_pred             CCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccC
Q 038455           88 SFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSR  167 (170)
Q Consensus        88 ~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~i  167 (170)
                      ..+.+..|..+++|++|+|++|.+++..|.    .|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|++.+..
T Consensus        94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A           94 ENVQHKMFKGLESLKTLMLRSNRITCVGND----SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             CCCCGGGGTTCSSCCEEECTTSCCCCBCTT----SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             CccCHhHhcCCcCCCEEECCCCcCCeECHh----HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            344566789999999999999999998887    8999999999999999999888999999999999999999998643

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.42  E-value=6.1e-13  Score=100.31  Aligned_cols=71  Identities=28%  Similarity=0.387  Sum_probs=45.9

Q ss_pred             CCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455           91 NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus        91 ~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g  165 (170)
                      .+..|..+++|++|++++|.+++..+.    .|..+++|+.|+|++|+|.+..+..|..+++|+.|+|++|++++
T Consensus        75 ~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  145 (251)
T 3m19_A           75 SAGVFDDLTELGTLGLANNQLASLPLG----VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS  145 (251)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CHhHhccCCcCCEEECCCCcccccChh----HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc
Confidence            344456666666666666666665444    56666777777777777765555556667777777777777763

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.41  E-value=5.1e-13  Score=111.63  Aligned_cols=94  Identities=18%  Similarity=0.194  Sum_probs=51.2

Q ss_pred             CCeEEeecCCcCccceec--------------CCC--CCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCC
Q 038455           66 RRVMQLSLNYTRRLKYYD--------------RTS--ASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQL  129 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~--------------~~~--~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L  129 (170)
                      ..++.|+|+++. ++.+.              +..  +..+++..|.+|++|++|+|++|++++..+.    .|.++++|
T Consensus        52 ~~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~----~f~~L~~L  126 (635)
T 4g8a_A           52 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSL  126 (635)
T ss_dssp             TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG----GGTTCTTC
T ss_pred             cCCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH----HhcCCCCC
Confidence            367899999887 54442              111  1233344455555555555555555554333    45555555


Q ss_pred             CEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455          130 KMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus       130 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      ++|++++|++++..+..|+++++|++|+|++|.++
T Consensus       127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~  161 (635)
T 4g8a_A          127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ  161 (635)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred             CEEECCCCcCCCCChhhhhcCcccCeeccccCccc
Confidence            55555555555444444555555555555555554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.41  E-value=1.1e-12  Score=99.97  Aligned_cols=68  Identities=26%  Similarity=0.405  Sum_probs=38.8

Q ss_pred             CcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455           93 SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        93 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      ..|..+++|++|++++|.+.+..+.    .+..+++|+.|++++|.+.+..|..|..+++|++|+|++|.++
T Consensus        79 ~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  146 (270)
T 2o6q_A           79 GIFKELKNLETLWVTDNKLQALPIG----VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ  146 (270)
T ss_dssp             TTTSSCTTCCEEECCSSCCCCCCTT----TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             hhhcCCCCCCEEECCCCcCCcCCHh----HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence            3344555555555555555544333    4555566666666666666555555666666666666666665

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.39  E-value=2.1e-12  Score=95.89  Aligned_cols=74  Identities=24%  Similarity=0.254  Sum_probs=66.7

Q ss_pred             CCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455           88 SFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus        88 ~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g  165 (170)
                      ..+++..|..+++|++|+|++|.+++..|.    .|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|++..
T Consensus        93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           93 TELPKSLFEGLFSLQLLLLNANKINCLRVD----AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CccCHhHccCCCCCCEEECCCCCCCEeCHH----HcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            345566789999999999999999998887    89999999999999999998877889999999999999999863

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.39  E-value=1.8e-12  Score=101.90  Aligned_cols=97  Identities=21%  Similarity=0.311  Sum_probs=71.2

Q ss_pred             CCCCCceEecCC-C----------CCeEEeecCC-cCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccc
Q 038455           53 CDAWEGVMCNAT-T----------RRVMQLSLNY-TRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAY  120 (170)
Q Consensus        53 c~~w~gv~c~~~-~----------~~v~~L~L~~-~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~  120 (170)
                      |. |..|.|... .          ..++.|+|++ +. ++        .+++..|..|++|+.|+|++|+|++..|.   
T Consensus         8 C~-~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~-l~--------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~---   74 (347)
T 2ifg_A            8 HG-SSGLRCTRDGALDSLHHLPGAENLTELYIENQQH-LQ--------HLELRDLRGLGELRNLTIVKSGLRFVAPD---   74 (347)
T ss_dssp             SS-SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSS-CC--------EECGGGSCSCCCCSEEECCSSCCCEECTT---
T ss_pred             cc-CCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCC-CC--------CcChhHhccccCCCEEECCCCccceeCHH---
Confidence            88 999999643 0          1255566654 44 33        33556788888888888888888887776   


Q ss_pred             cccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455          121 DSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus       121 ~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                       .|..+++|+.|+|++|+|++..+..|..+. |+.|+|.+|+|.
T Consensus        75 -~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           75 -AFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             -GGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             -HhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence             788888888888888888865555566555 888888888876

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.39  E-value=1.6e-12  Score=107.62  Aligned_cols=99  Identities=28%  Similarity=0.412  Sum_probs=77.7

Q ss_pred             CCCCCCceEecCC-----------CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccc
Q 038455           52 CCDAWEGVMCNAT-----------TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAY  120 (170)
Q Consensus        52 ~c~~w~gv~c~~~-----------~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~  120 (170)
                      .|. |.|+ |+..           ...++.|+++++. +++.        .+..|..+++|++|++++|.+++..|.   
T Consensus         3 ~C~-~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~-l~~~--------~~~~~~~l~~L~~L~Ls~n~i~~~~~~---   68 (549)
T 2z81_A            3 SCD-ASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNK-ITYI--------GHGDLRACANLQVLILKSSRINTIEGD---   68 (549)
T ss_dssp             EEC-TTSE-EECTTSCCSSCCSCCCTTCCEEECCSSC-CCEE--------CSSTTSSCTTCCEEECTTSCCCEECTT---
T ss_pred             cCC-CCce-EECCCCccccccccCCCCccEEECcCCc-cCcc--------ChhhhhcCCcccEEECCCCCcCccChh---
Confidence            477 8888 7632           2357778888777 4433        456688888899999999988887776   


Q ss_pred             cccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455          121 DSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus       121 ~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g  165 (170)
                       .|..+++|++|++++|++.+..|..|+.+++|++|++++|++++
T Consensus        69 -~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  112 (549)
T 2z81_A           69 -AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT  112 (549)
T ss_dssp             -TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSS
T ss_pred             -hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccc
Confidence             78888889999999888887777778888888888888888874

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.36  E-value=3.2e-12  Score=100.71  Aligned_cols=105  Identities=34%  Similarity=0.513  Sum_probs=79.6

Q ss_pred             CCCCCCCCCceEecCC-----------CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccC
Q 038455           49 PSDCCDAWEGVMCNAT-----------TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYEN  117 (170)
Q Consensus        49 ~~~~c~~w~gv~c~~~-----------~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~  117 (170)
                      ....|. |.++ |+..           ...++.|+++++. ++.        +++..|..+++|++|++++|.+++..|.
T Consensus        26 ~~~~C~-~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~-i~~--------~~~~~~~~l~~L~~L~L~~n~l~~~~~~   94 (353)
T 2z80_A           26 ASLSCD-RNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNR-ITY--------ISNSDLQRCVNLQALVLTSNGINTIEED   94 (353)
T ss_dssp             -CCEEC-TTSE-EECCSTTCSSCCTTCCTTCCEEECTTSC-CCE--------ECTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred             cCCCCC-CCeE-eeCCCCCcccccccccccCcEEECCCCc-Ccc--------cCHHHhccCCCCCEEECCCCccCccCHh
Confidence            356788 9998 6532           2356777777776 443        3455688888999999999998887676


Q ss_pred             ccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCCC
Q 038455          118 RAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTK  169 (170)
Q Consensus       118 ~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~  169 (170)
                          .+..+++|++|++++|++++..+..|..+++|++|++++|+++ .+|.
T Consensus        95 ----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~  141 (353)
T 2z80_A           95 ----SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGE  141 (353)
T ss_dssp             ----TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCS
T ss_pred             ----hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCc
Confidence                7888899999999999988655556888899999999999887 4553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.35  E-value=3.8e-12  Score=91.03  Aligned_cols=90  Identities=27%  Similarity=0.304  Sum_probs=75.8

Q ss_pred             CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh
Q 038455           66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP  145 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~  145 (170)
                      ..++.|+++++. ++        .+++..|..+++|++|++++|.+++..+.    .+..+++|+.|++++|++.+..+.
T Consensus        52 ~~L~~L~l~~n~-l~--------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~  118 (177)
T 2o6r_A           52 TQLTKLSLSQNQ-IQ--------SLPDGVFDKLTKLTILYLHENKLQSLPNG----VFDKLTQLKELALDTNQLKSVPDG  118 (177)
T ss_dssp             TTCSEEECCSSC-CC--------CCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             ccccEEECCCCc-ce--------EeChhHccCCCccCEEECCCCCccccCHH----HhhCCcccCEEECcCCcceEeCHH
Confidence            467888888877 43        34556688999999999999999987665    688999999999999999976666


Q ss_pred             hccCCCCCCEEeCCCCcCcccCC
Q 038455          146 YLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus       146 ~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      .+..+++|+.|++++|++++..|
T Consensus       119 ~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          119 IFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TTTTCTTCCEEECCSSCBCCCHH
T ss_pred             HhcCCcccCEEEecCCCeeccCc
Confidence            67899999999999999987654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.34  E-value=2.2e-12  Score=101.20  Aligned_cols=73  Identities=23%  Similarity=0.126  Sum_probs=64.7

Q ss_pred             CcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCCC
Q 038455           93 SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTK  169 (170)
Q Consensus        93 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~  169 (170)
                      ..+..+++|++|++++|.+.+.+|.    .+..+++|+.|++++|.+.+.+|..+..+++|+.|+|++|++.|.+|+
T Consensus       223 ~~l~~l~~L~~L~Ls~n~~~~~~p~----~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~  295 (328)
T 4fcg_A          223 PAIHHLPKLEELDLRGCTALRNYPP----IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS  295 (328)
T ss_dssp             GGGGGCTTCCEEECTTCTTCCBCCC----CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred             hhhccCCCCCEEECcCCcchhhhHH----HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence            3577888999999999888888887    888999999999999998889998899999999999999999988886

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.34  E-value=6.3e-12  Score=93.74  Aligned_cols=74  Identities=22%  Similarity=0.186  Sum_probs=65.1

Q ss_pred             CCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccC
Q 038455           89 FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSR  167 (170)
Q Consensus        89 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~i  167 (170)
                      .+++..|..+++|++|++++|.++. +|.    .+..+++|+.|+|++|+|.+..+..|..+++|+.|+|++|++.+..
T Consensus       102 ~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          102 VLPSAVFDRLVHLKELFMCCNKLTE-LPR----GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCS-CCT----TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             ccChhHhCcchhhCeEeccCCcccc-cCc----ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            4456668899999999999999995 677    8899999999999999999776678999999999999999998654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.32  E-value=8.4e-12  Score=90.88  Aligned_cols=87  Identities=25%  Similarity=0.310  Sum_probs=75.1

Q ss_pred             CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh
Q 038455           66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP  145 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~  145 (170)
                      .+++.|+|+++. +        ..+.+..|..+++|++|+|++|.+++..|.    .|..+++|+.|+|++|.|+...+.
T Consensus        54 ~~L~~L~Ls~N~-i--------~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~----~f~~l~~L~~L~L~~N~l~~~~~~  120 (193)
T 2wfh_A           54 KHLTLIDLSNNR-I--------STLSNQSFSNMTQLLTLILSYNRLRCIPPR----TFDGLKSLRLLSLHGNDISVVPEG  120 (193)
T ss_dssp             TTCCEEECCSSC-C--------CCCCTTTTTTCTTCCEEECCSSCCCBCCTT----TTTTCTTCCEEECCSSCCCBCCTT
T ss_pred             cCCCEEECCCCc-C--------CEeCHhHccCCCCCCEEECCCCccCEeCHH----HhCCCCCCCEEECCCCCCCeeChh
Confidence            467778888777 3        344567799999999999999999998777    899999999999999999976666


Q ss_pred             hccCCCCCCEEeCCCCcCcc
Q 038455          146 YLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus       146 ~~~~l~~L~~L~L~~N~l~g  165 (170)
                      .|..+++|+.|+|++|++..
T Consensus       121 ~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A          121 AFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             TTTTCTTCCEEECCSSCEEC
T ss_pred             hhhcCccccEEEeCCCCeec
Confidence            79999999999999999863

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.32  E-value=1.3e-11  Score=90.29  Aligned_cols=76  Identities=25%  Similarity=0.266  Sum_probs=66.7

Q ss_pred             CCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455           89 FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus        89 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      .+++..|..+++|++|++++|.+++..+.    .+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus        90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A           90 SLPNGVFDKLTQLKELALNTNQLQSLPDG----VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred             ccCHhHhcCccCCCEEEcCCCcCcccCHh----HhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence            44556688999999999999999987665    68999999999999999997777779999999999999999887766

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.31  E-value=1.6e-11  Score=92.50  Aligned_cols=70  Identities=29%  Similarity=0.400  Sum_probs=40.1

Q ss_pred             CCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455           91 NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        91 ~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      ++..|..+++|++|++++|.+++..+.    .+..+++|+.|+|++|++.+..+..|..+++|++|+|++|+++
T Consensus        99 ~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A           99 PLGVFDHLTQLDKLYLGGNQLKSLPSG----VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ChhHhcccCCCCEEEcCCCcCCCcChh----HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence            344455566666666666666654443    4555666666666666665444445555666666666666655

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.30  E-value=1.4e-11  Score=87.98  Aligned_cols=85  Identities=24%  Similarity=0.179  Sum_probs=70.7

Q ss_pred             eEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhc
Q 038455           68 VMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYL  147 (170)
Q Consensus        68 v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~  147 (170)
                      .+.++++++. ++.+        +. .+  .++|++|+|++|.|++..|.    .|..+++|+.|+|++|+|++..+..|
T Consensus        11 ~~~l~~s~n~-l~~i--------p~-~~--~~~l~~L~L~~N~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~l~~~~f   74 (170)
T 3g39_A           11 GTTVDCSGKS-LASV--------PT-GI--PTTTQVLYLYDNQITKLEPG----VFDRLTQLTRLDLDNNQLTVLPAGVF   74 (170)
T ss_dssp             TTEEECTTSC-CSSC--------CS-CC--CTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTT
T ss_pred             CCEEEeCCCC-cCcc--------Cc-cC--CCCCcEEEcCCCcCCccChh----hhcCcccCCEEECCCCCcCccChhhc
Confidence            4578888887 4433        22 22  37899999999999998787    89999999999999999997777778


Q ss_pred             cCCCCCCEEeCCCCcCcccCCC
Q 038455          148 NTLTSLTTLNLSYNKIEGSRTK  169 (170)
Q Consensus       148 ~~l~~L~~L~L~~N~l~g~iP~  169 (170)
                      ..+++|++|+|++|+|++ +|+
T Consensus        75 ~~l~~L~~L~L~~N~l~~-~~~   95 (170)
T 3g39_A           75 DKLTQLTQLSLNDNQLKS-IPR   95 (170)
T ss_dssp             TTCTTCCEEECCSSCCCC-CCT
T ss_pred             cCCCCCCEEECCCCccCE-eCH
Confidence            999999999999999995 443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.29  E-value=3.7e-12  Score=103.15  Aligned_cols=99  Identities=23%  Similarity=0.295  Sum_probs=69.7

Q ss_pred             CCeEEeecCCcCccceecCC--------------CC---CCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCC
Q 038455           66 RRVMQLSLNYTRRLKYYDRT--------------SA---SFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQ  128 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~--------------~~---~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~  128 (170)
                      .+++.|+|+++. ++.....              ..   ..+.+..|..+++|++|++++|.+++..|.    .+..+++
T Consensus        30 ~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~  104 (455)
T 3v47_A           30 AHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG----AFNGLAN  104 (455)
T ss_dssp             TTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT----TTTTCTT
T ss_pred             CccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh----hccCccc
Confidence            468889998887 5444221              11   123345677778888888888888776676    7788888


Q ss_pred             CCEEECCCCCCCCCChhh--ccCCCCCCEEeCCCCcCcccCCC
Q 038455          129 LKMLNLGFNYVNDSILPY--LNTLTSLTTLNLSYNKIEGSRTK  169 (170)
Q Consensus       129 L~~L~Ls~N~l~g~~p~~--~~~l~~L~~L~L~~N~l~g~iP~  169 (170)
                      |++|++++|.+.+.+|..  |..+++|++|++++|.+++..|.
T Consensus       105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  147 (455)
T 3v47_A          105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA  147 (455)
T ss_dssp             CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC
T ss_pred             CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc
Confidence            888888888887655554  77788888888888888765553

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.29  E-value=4.4e-12  Score=98.72  Aligned_cols=75  Identities=25%  Similarity=0.268  Sum_probs=67.9

Q ss_pred             CCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCCC
Q 038455           90 MNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTK  169 (170)
Q Consensus        90 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~  169 (170)
                      ..+..|..+++|+.|++++|.+++.+|     .+..+++|+.|++++|++.+.+|..+..+++|+.|+|++|+++|.+|.
T Consensus       212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          212 DASVLFGSDKNTQKIHLAKNSLAFDLG-----KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             CCGGGCCTTSCCSEEECCSSEECCBGG-----GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             cCCHHHhcCCCCCEEECCCCceeeecC-----cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence            345678899999999999999998666     578899999999999999999999999999999999999999999986

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.28  E-value=1e-11  Score=98.47  Aligned_cols=109  Identities=25%  Similarity=0.290  Sum_probs=74.4

Q ss_pred             CCCCCceEecCC---------CCCeEEeecCCcCccceecCC-----------------CCCCCCCCcCCCCCCCCEEec
Q 038455           53 CDAWEGVMCNAT---------TRRVMQLSLNYTRRLKYYDRT-----------------SASFMNMSLFHPFEELQSLDL  106 (170)
Q Consensus        53 c~~w~gv~c~~~---------~~~v~~L~L~~~~~l~~~~~~-----------------~~~~~~~~~~~~l~~L~~L~l  106 (170)
                      |. +..+.|...         ...++.|+|+++. ++.+...                 .+..+.+..|..+++|++|+|
T Consensus        18 C~-~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           18 CA-SNILSCSKQQLPNVPQSLPSYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             EE-TTEEECCSSCCSSCCSSCCTTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             EC-CCEEEeCCCCcCccCccCCCCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence            66 788888541         2346778888776 5444211                 122334455777777888888


Q ss_pred             cCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455          107 SENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus       107 s~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      ++|+++...+.    .|..+++|+.|+|++|+|.+..|..|..+++|+.|+|++|+|+ .+|
T Consensus        96 s~N~l~~~~~~----~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~  152 (361)
T 2xot_A           96 SSNHLHTLDEF----LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFP  152 (361)
T ss_dssp             CSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCC
T ss_pred             CCCcCCcCCHH----HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeC
Confidence            88877775555    6777788888888888887666777888888888888888877 344

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.28  E-value=2e-11  Score=87.49  Aligned_cols=84  Identities=24%  Similarity=0.212  Sum_probs=68.5

Q ss_pred             EEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhcc
Q 038455           69 MQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLN  148 (170)
Q Consensus        69 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~  148 (170)
                      +.++++++. ++.+        +. .+  .++|++|+|++|.+++..|.    .|..+++|+.|+|++|+|++..+..|.
T Consensus        15 ~~l~~~~n~-l~~i--------P~-~~--~~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~i~~~~~~   78 (174)
T 2r9u_A           15 TLVNCQNIR-LASV--------PA-GI--PTDKQRLWLNNNQITKLEPG----VFDHLVNLQQLYFNSNKLTAIPTGVFD   78 (174)
T ss_dssp             SEEECCSSC-CSSC--------CS-CC--CTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             cEEEeCCCC-CCcc--------CC-Cc--CCCCcEEEeCCCCccccCHH----HhcCCcCCCEEECCCCCCCccChhHhC
Confidence            466777776 4332        22 22  27899999999999998787    899999999999999999976666789


Q ss_pred             CCCCCCEEeCCCCcCcccCCC
Q 038455          149 TLTSLTTLNLSYNKIEGSRTK  169 (170)
Q Consensus       149 ~l~~L~~L~L~~N~l~g~iP~  169 (170)
                      .+++|++|+|++|+|+ .+|+
T Consensus        79 ~l~~L~~L~L~~N~l~-~l~~   98 (174)
T 2r9u_A           79 KLTQLTQLDLNDNHLK-SIPR   98 (174)
T ss_dssp             TCTTCCEEECCSSCCC-CCCT
T ss_pred             CcchhhEEECCCCccc-eeCH
Confidence            9999999999999999 4554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.28  E-value=9.3e-12  Score=97.74  Aligned_cols=84  Identities=19%  Similarity=0.162  Sum_probs=71.8

Q ss_pred             EeecCCc-CccceecCCCCCCCCCCcCCCCCCCCEEeccC-CccCccccCccccccCCCCCCCEEECCCCCCCCCChhhc
Q 038455           70 QLSLNYT-RRLKYYDRTSASFMNMSLFHPFEELQSLDLSE-NWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYL  147 (170)
Q Consensus        70 ~L~L~~~-~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~-N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~  147 (170)
                      .++.+++ . |+.+         |. +..+++|++|+|++ |.|.+..+.    .|..+++|+.|+|++|+|++..|..|
T Consensus        12 ~v~~~~~n~-l~~i---------p~-l~~~~~L~~L~l~~~n~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~   76 (347)
T 2ifg_A           12 GLRCTRDGA-LDSL---------HH-LPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRFVAPDAF   76 (347)
T ss_dssp             CEECCSSCC-CTTT---------TT-SCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSCCCEECTTGG
T ss_pred             EEEcCCCCC-CCcc---------CC-CCCCCCeeEEEccCCCCCCCcChh----HhccccCCCEEECCCCccceeCHHHh
Confidence            4566666 4 4333         44 88999999999996 999997777    89999999999999999999888899


Q ss_pred             cCCCCCCEEeCCCCcCcccCCC
Q 038455          148 NTLTSLTTLNLSYNKIEGSRTK  169 (170)
Q Consensus       148 ~~l~~L~~L~L~~N~l~g~iP~  169 (170)
                      ..+++|+.|+|++|+|+ .+|.
T Consensus        77 ~~l~~L~~L~l~~N~l~-~~~~   97 (347)
T 2ifg_A           77 HFTPRLSRLNLSFNALE-SLSW   97 (347)
T ss_dssp             GSCSCCCEEECCSSCCS-CCCS
T ss_pred             cCCcCCCEEeCCCCccc-eeCH
Confidence            99999999999999999 4554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.28  E-value=2.5e-11  Score=92.54  Aligned_cols=75  Identities=29%  Similarity=0.296  Sum_probs=51.5

Q ss_pred             CCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455           90 MNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus        90 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      +++..|..+++|+.|++++|++++..+.    .+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+..|
T Consensus       148 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          148 LPKGVFDKLTNLTELDLSYNQLQSLPEG----VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cCHHHhccCccCCEEECCCCCcCccCHH----HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence            3344466677777777777777765554    56677777777777777776666667777777777777777766555

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.26  E-value=3.4e-11  Score=92.90  Aligned_cols=76  Identities=25%  Similarity=0.239  Sum_probs=56.6

Q ss_pred             CCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455           89 FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus        89 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      .+++..|..+++|++|++++|++++..+.    .|..+++|+.|+|++|+++...+..|..+++|+.|+|++|+++ .+|
T Consensus       114 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip  188 (290)
T 1p9a_G          114 SLPLGALRGLGELQELYLKGNELKTLPPG----LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP  188 (290)
T ss_dssp             CCCSSTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred             ccCHHHHcCCCCCCEEECCCCCCCccChh----hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccC
Confidence            34456677788888888888888775555    6777888888888888888555556677888888888888887 666


Q ss_pred             C
Q 038455          169 K  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       189 ~  189 (290)
T 1p9a_G          189 K  189 (290)
T ss_dssp             T
T ss_pred             h
Confidence            4

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.26  E-value=4.4e-12  Score=101.10  Aligned_cols=76  Identities=21%  Similarity=0.170  Sum_probs=57.2

Q ss_pred             CCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455           89 FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus        89 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      .+.+..|..+++|++|++++|.+++..|.    .+..+++|+.|++++|.+....+..|..+++|++|++++|.+++..|
T Consensus        83 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~  158 (390)
T 3o6n_A           83 EIDTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED  158 (390)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred             ccChhhccCCCCcCEEECCCCCCCcCCHH----HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccCh
Confidence            34455677888888888888888876666    67888888888888888884444446888888888888888875433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.26  E-value=2.4e-11  Score=101.79  Aligned_cols=98  Identities=19%  Similarity=0.200  Sum_probs=59.4

Q ss_pred             CCeEEeecCCcCccceecC--------------C--CCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCC
Q 038455           66 RRVMQLSLNYTRRLKYYDR--------------T--SASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQL  129 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~--------------~--~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L  129 (170)
                      .+++.|+|+++. ++.+..              .  .+..+.+..|..+++|++|++++|.+++..|.    .|.++++|
T Consensus        32 ~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L  106 (606)
T 3vq2_A           32 SSTKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG----SFSGLTSL  106 (606)
T ss_dssp             TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT----SSTTCTTC
T ss_pred             CCcCEEECCCCC-cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh----hcCCcccC
Confidence            467888888876 443321              1  11223344566666666666666666665555    66666666


Q ss_pred             CEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc-cCC
Q 038455          130 KMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG-SRT  168 (170)
Q Consensus       130 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g-~iP  168 (170)
                      ++|++++|.+.+..|..++.+++|++|++++|.+++ .+|
T Consensus       107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp  146 (606)
T 3vq2_A          107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP  146 (606)
T ss_dssp             CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCC
T ss_pred             CEEEccCCccccccccccCCCCCCCEEeCCCCcccceech
Confidence            666666666665555566666666666666666653 444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.25  E-value=1.4e-11  Score=97.60  Aligned_cols=75  Identities=28%  Similarity=0.358  Sum_probs=63.4

Q ss_pred             CCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhc---cCCCCCCEEeCCCCcCcc
Q 038455           89 FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYL---NTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus        89 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~---~~l~~L~~L~L~~N~l~g  165 (170)
                      .+.+..|..+++|++|+|++|.+.+..|.    .|..+++|+.|+|++|+|.+..+..|   ..+++|+.|+|++|+|+ 
T Consensus       102 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~----~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-  176 (361)
T 2xot_A          102 TLDEFLFSDLQALEVLLLYNNHIVVVDRN----AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-  176 (361)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-
T ss_pred             cCCHHHhCCCcCCCEEECCCCcccEECHH----HhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-
Confidence            34566789999999999999999998787    89999999999999999996544455   67999999999999998 


Q ss_pred             cCC
Q 038455          166 SRT  168 (170)
Q Consensus       166 ~iP  168 (170)
                      .+|
T Consensus       177 ~l~  179 (361)
T 2xot_A          177 KLP  179 (361)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            555

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.25  E-value=4.4e-11  Score=91.17  Aligned_cols=75  Identities=23%  Similarity=0.359  Sum_probs=54.5

Q ss_pred             CCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455           90 MNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus        90 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      +.+..|..+++|++|++++|.+++..+.    .+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus       124 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          124 LPDGVFDKLTNLTYLNLAHNQLQSLPKG----VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             cCHHHhccCCCCCEEECCCCccCccCHH----HhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence            3444567777778888887777775554    56777888888888888876666667778888888888888875433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.24  E-value=3e-11  Score=98.28  Aligned_cols=96  Identities=24%  Similarity=0.293  Sum_probs=70.7

Q ss_pred             CCceEecCC---------CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCC
Q 038455           56 WEGVMCNAT---------TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSL  126 (170)
Q Consensus        56 w~gv~c~~~---------~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l  126 (170)
                      |..|.|...         ...++.|+|+++. ++.+        .+..|..+++|++|+|++|.+++..|.    .|..+
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~-i~~~--------~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l  122 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENN-IQMI--------QADTFRHLHHLEVLQLGRNSIRQIEVG----AFNGL  122 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSC-CCEE--------CTTTTTTCTTCCEEECCSSCCCEECTT----TTTTC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCc-CceE--------CHHHcCCCCCCCEEECCCCccCCcChh----hccCc
Confidence            678888641         2357788888777 4433        456677788888888888888776666    77778


Q ss_pred             CCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455          127 KQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus       127 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      ++|+.|+|++|++++..+..|..+++|++|+|++|+++
T Consensus       123 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  160 (452)
T 3zyi_A          123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE  160 (452)
T ss_dssp             TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC
T ss_pred             ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc
Confidence            88888888888887666666777888888888888776

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.24  E-value=6.9e-12  Score=108.05  Aligned_cols=69  Identities=28%  Similarity=0.249  Sum_probs=39.9

Q ss_pred             cCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455           94 LFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus        94 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      .|..|++|++|+|++|.|+ .+|.    .|..+++|+.|+|++|.|+ .+|..|+.+++|+.|+|++|+|+|.+|
T Consensus       265 ~~~~l~~L~~L~Ls~N~l~-~lp~----~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p  333 (727)
T 4b8c_D          265 EIKNLSNLRVLDLSHNRLT-SLPA----ELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFL  333 (727)
T ss_dssp             GGGGGTTCCEEECTTSCCS-SCCS----SGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred             hhhCCCCCCEEeCcCCcCC-ccCh----hhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCCh
Confidence            3455555666666666655 2455    5555666666666666655 455556666666666666666655444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.24  E-value=4.7e-11  Score=92.05  Aligned_cols=73  Identities=23%  Similarity=0.186  Sum_probs=62.6

Q ss_pred             CCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCCC
Q 038455           92 MSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTK  169 (170)
Q Consensus        92 ~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~  169 (170)
                      +..+..+++|++|++++|++++..|.    .|..+++|+.|++++|++.+..+..|..+++|+.|+|++|+++ .+|.
T Consensus        93 ~~~~~~l~~L~~L~l~~N~l~~l~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~  165 (290)
T 1p9a_G           93 PLLGQTLPALTVLDVSFNRLTSLPLG----ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA  165 (290)
T ss_dssp             CCCTTTCTTCCEEECCSSCCCCCCSS----TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CCCT
T ss_pred             chhhccCCCCCEEECCCCcCcccCHH----HHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-ccCH
Confidence            34577889999999999999987666    7899999999999999999777777889999999999999998 5664

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.24  E-value=2.5e-11  Score=101.34  Aligned_cols=75  Identities=28%  Similarity=0.324  Sum_probs=58.3

Q ss_pred             CCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCCC
Q 038455           91 NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTK  169 (170)
Q Consensus        91 ~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~  169 (170)
                      .+..|..+++|++|+|++|++++..|.    .|..+++|+.|+|++|+|++..|..|..+++|++|+|++|+|++..|.
T Consensus       486 ~~~~~~~l~~L~~L~Ls~N~L~~l~~~----~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~  560 (635)
T 4g8a_A          486 LPDIFTELRNLTFLDLSQCQLEQLSPT----AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ  560 (635)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS
T ss_pred             CchhhhhccccCEEECCCCccCCcChH----HHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH
Confidence            345677788888888888888887776    788888888888888888877777788888888888888888765553

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.23  E-value=3e-11  Score=83.85  Aligned_cols=87  Identities=24%  Similarity=0.232  Sum_probs=71.8

Q ss_pred             CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCC-C
Q 038455           65 TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDS-I  143 (170)
Q Consensus        65 ~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~-~  143 (170)
                      -.+++.|+++++. ++..          ..+..+++|++|++++|.+++.+|.    .+..+++|+.|++++|.+++. .
T Consensus        41 l~~L~~L~l~~n~-l~~~----------~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~ls~N~i~~~~~  105 (149)
T 2je0_A           41 FEELEFLSTINVG-LTSI----------ANLPKLNKLKKLELSDNRVSGGLEV----LAEKCPNLTHLNLSGNKIKDLST  105 (149)
T ss_dssp             CTTCCEEECTTSC-CCCC----------TTCCCCTTCCEEECCSSCCCSCTHH----HHHHCTTCCEEECTTSCCCSHHH
T ss_pred             cCCCcEEECcCCC-CCCc----------hhhhcCCCCCEEECCCCcccchHHH----HhhhCCCCCEEECCCCcCCChHH
Confidence            3567888888877 3322          5678899999999999999987776    777799999999999999863 3


Q ss_pred             hhhccCCCCCCEEeCCCCcCccc
Q 038455          144 LPYLNTLTSLTTLNLSYNKIEGS  166 (170)
Q Consensus       144 p~~~~~l~~L~~L~L~~N~l~g~  166 (170)
                      |..+..+++|++|++++|++++.
T Consensus       106 ~~~~~~l~~L~~L~l~~N~l~~~  128 (149)
T 2je0_A          106 IEPLKKLENLKSLDLFNCEVTNL  128 (149)
T ss_dssp             HGGGGGCTTCCEEECTTCGGGGS
T ss_pred             HHHHhhCCCCCEEeCcCCcccch
Confidence            47899999999999999999854

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.23  E-value=4.7e-11  Score=97.41  Aligned_cols=97  Identities=30%  Similarity=0.388  Sum_probs=53.2

Q ss_pred             CCceEecC---------CCCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCC
Q 038455           56 WEGVMCNA---------TTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSL  126 (170)
Q Consensus        56 w~gv~c~~---------~~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l  126 (170)
                      |..|.|..         ....++.|+|+++. ++.+        .+..|..+++|++|+|++|.+++..|.    .|..+
T Consensus        13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~-l~~~--------~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l   79 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNR-IKTL--------NQDEFASFPHLEELELNENIVSAVEPG----AFNNL   79 (477)
T ss_dssp             TTEEECCSCCCSSCCSCCCTTCSEEECCSSC-CCEE--------CTTTTTTCTTCCEEECTTSCCCEECTT----TTTTC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEECCCCc-cceE--------CHhHccCCCCCCEEECCCCccCEeChh----hhhCC
Confidence            67788853         12356778888776 4443        234455555555555555555554444    55555


Q ss_pred             CCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455          127 KQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus       127 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g  165 (170)
                      ++|+.|+|++|++....+..|..+++|++|+|++|++++
T Consensus        80 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~  118 (477)
T 2id5_A           80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI  118 (477)
T ss_dssp             TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCE
T ss_pred             ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcccc
Confidence            555555555555553333344555555555555555543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.22  E-value=3.8e-11  Score=97.14  Aligned_cols=75  Identities=29%  Similarity=0.344  Sum_probs=59.3

Q ss_pred             CCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455           90 MNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus        90 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      +.+..|..+++|++|++++|.+++..|.    .+..+++|+.|++++|++++..+..+..+++|+.|++++|++++.+|
T Consensus       338 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          338 IDSRMFENLDKLEVLDLSYNHIRALGDQ----SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             ECGGGGTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cChhHhcCcccCCEEECCCCcccccChh----hccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            3355677788888888888888877676    78888888888888888886666667888888888888888888776

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.21  E-value=1.8e-11  Score=84.99  Aligned_cols=86  Identities=33%  Similarity=0.298  Sum_probs=67.5

Q ss_pred             CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh
Q 038455           66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP  145 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~  145 (170)
                      .+++.|+++++. ++.       ...+..+..+++|++|++++|.+++.  .    .+..+++|+.|++++|.+.+.+|.
T Consensus        17 ~~l~~L~l~~n~-l~~-------~~~~~~~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~Ls~n~i~~~~~~   82 (149)
T 2je0_A           17 SDVKELVLDNSR-SNE-------GKLEGLTDEFEELEFLSTINVGLTSI--A----NLPKLNKLKKLELSDNRVSGGLEV   82 (149)
T ss_dssp             GGCSEEECTTCB-CBT-------TBCCSCCTTCTTCCEEECTTSCCCCC--T----TCCCCTTCCEEECCSSCCCSCTHH
T ss_pred             ccCeEEEccCCc-CCh-------hHHHHHHhhcCCCcEEECcCCCCCCc--h----hhhcCCCCCEEECCCCcccchHHH
Confidence            457788888877 430       01134667888899999999988875  4    788889999999999999877888


Q ss_pred             hccCCCCCCEEeCCCCcCcc
Q 038455          146 YLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus       146 ~~~~l~~L~~L~L~~N~l~g  165 (170)
                      .+..+++|++|++++|++++
T Consensus        83 ~~~~l~~L~~L~ls~N~i~~  102 (149)
T 2je0_A           83 LAEKCPNLTHLNLSGNKIKD  102 (149)
T ss_dssp             HHHHCTTCCEEECTTSCCCS
T ss_pred             HhhhCCCCCEEECCCCcCCC
Confidence            88888899999999998875

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.21  E-value=9.9e-11  Score=89.03  Aligned_cols=70  Identities=29%  Similarity=0.439  Sum_probs=44.0

Q ss_pred             CCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455           91 NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        91 ~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      ++..|..+++|++|++++|.+++..+.    .|..+++|+.|++++|.+.+..+..|..+++|+.|+|++|+++
T Consensus       101 ~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  170 (270)
T 2o6q_A          101 PIGVFDQLVNLAELRLDRNQLKSLPPR----VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK  170 (270)
T ss_dssp             CTTTTTTCSSCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CHhHcccccCCCEEECCCCccCeeCHH----HhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence            344456666666666666666665554    5666666666666666666544445666666666666666666

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.21  E-value=1.7e-11  Score=103.15  Aligned_cols=76  Identities=21%  Similarity=0.170  Sum_probs=60.9

Q ss_pred             CCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455           89 FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus        89 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      .+.+..|..+++|++|+|++|.+++..|.    .|+.+++|+.|+|++|.+.+..+..|+.+++|++|+|++|.+++..|
T Consensus        89 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~  164 (597)
T 3oja_B           89 EIDTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED  164 (597)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred             CCChHHhcCCCCCCEEECCCCcCCCCCHH----HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh
Confidence            44455788888888888888888887666    77888889999999998886555567888899999999998886554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.19  E-value=8.7e-11  Score=95.18  Aligned_cols=96  Identities=25%  Similarity=0.301  Sum_probs=66.8

Q ss_pred             CCceEecCC---------CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCC
Q 038455           56 WEGVMCNAT---------TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSL  126 (170)
Q Consensus        56 w~gv~c~~~---------~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l  126 (170)
                      |..|.|...         ...++.|+|+++. ++.+        .+..|..+++|++|+|++|.++...+.    .|..+
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~-i~~~--------~~~~~~~l~~L~~L~Ls~n~i~~i~~~----~~~~l  111 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQ-IQII--------KVNSFKHLRHLEILQLSRNHIRTIEIG----AFNGL  111 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCC-CCEE--------CTTTTSSCSSCCEEECCSSCCCEECGG----GGTTC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCc-CCee--------CHHHhhCCCCCCEEECCCCcCCccChh----hccCC
Confidence            678888641         2346777777776 4433        445677777777777777777776555    67777


Q ss_pred             CCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455          127 KQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus       127 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      ++|+.|+|++|+++...+..|..+++|+.|+|++|+++
T Consensus       112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~  149 (440)
T 3zyj_A          112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE  149 (440)
T ss_dssp             SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC
T ss_pred             ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc
Confidence            77777777777777555556777777777777777776

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.19  E-value=5.7e-11  Score=84.89  Aligned_cols=86  Identities=21%  Similarity=0.195  Sum_probs=70.9

Q ss_pred             CeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh-
Q 038455           67 RVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP-  145 (170)
Q Consensus        67 ~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~-  145 (170)
                      .++.|+++++. ++.+          ..|..+++|++|++++|.+++..+.    .+..+++|+.|++++|++. .+|. 
T Consensus        43 ~L~~L~Ls~N~-l~~~----------~~l~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~i~-~~~~~  106 (176)
T 1a9n_A           43 QFDAIDFSDNE-IRKL----------DGFPLLRRLKTLLVNNNRICRIGEG----LDQALPDLTELILTNNSLV-ELGDL  106 (176)
T ss_dssp             CCSEEECCSSC-CCEE----------CCCCCCSSCCEEECCSSCCCEECSC----HHHHCTTCCEEECCSCCCC-CGGGG
T ss_pred             CCCEEECCCCC-CCcc----------cccccCCCCCEEECCCCcccccCcc----hhhcCCCCCEEECCCCcCC-cchhh
Confidence            67888888887 4433          4578899999999999999985444    4588999999999999997 5776 


Q ss_pred             -hccCCCCCCEEeCCCCcCcccCCC
Q 038455          146 -YLNTLTSLTTLNLSYNKIEGSRTK  169 (170)
Q Consensus       146 -~~~~l~~L~~L~L~~N~l~g~iP~  169 (170)
                       .+..+++|+.|++++|+++ .+|.
T Consensus       107 ~~l~~l~~L~~L~l~~N~i~-~~~~  130 (176)
T 1a9n_A          107 DPLASLKSLTYLCILRNPVT-NKKH  130 (176)
T ss_dssp             GGGGGCTTCCEEECCSSGGG-GSTT
T ss_pred             HhhhcCCCCCEEEecCCCCC-CcHh
Confidence             7899999999999999998 5553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.19  E-value=5.6e-11  Score=99.75  Aligned_cols=87  Identities=24%  Similarity=0.253  Sum_probs=74.9

Q ss_pred             CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCC-h
Q 038455           66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSI-L  144 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~-p  144 (170)
                      ..++.|+|+++. ++.        + |..|+.+++|+.|+|++|.+++ +|     .++.+++|+.|+|++|+|++.. |
T Consensus       463 ~~L~~L~Ls~N~-l~~--------l-p~~~~~l~~L~~L~Ls~N~l~~-lp-----~l~~l~~L~~L~Ls~N~l~~~~~p  526 (567)
T 1dce_A          463 LLVTHLDLSHNR-LRA--------L-PPALAALRCLEVLQASDNALEN-VD-----GVANLPRLQELLLCNNRLQQSAAI  526 (567)
T ss_dssp             TTCCEEECCSSC-CCC--------C-CGGGGGCTTCCEEECCSSCCCC-CG-----GGTTCSSCCEEECCSSCCCSSSTT
T ss_pred             ccCcEeecCccc-ccc--------c-chhhhcCCCCCEEECCCCCCCC-Cc-----ccCCCCCCcEEECCCCCCCCCCCc
Confidence            467888888887 432        2 4578999999999999999998 56     6899999999999999999876 9


Q ss_pred             hhccCCCCCCEEeCCCCcCcccCC
Q 038455          145 PYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus       145 ~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      ..++.+++|+.|+|++|++++..|
T Consensus       527 ~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          527 QPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             GGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             HHHhcCCCCCEEEecCCcCCCCcc
Confidence            999999999999999999996544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.19  E-value=3e-11  Score=85.52  Aligned_cols=86  Identities=29%  Similarity=0.257  Sum_probs=69.9

Q ss_pred             CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCC-h
Q 038455           66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSI-L  144 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~-p  144 (170)
                      ..++.|+++++. ++.        +  ..+..+++|++|++++|.+.+.+|.    .+..+++|+.|++++|.+.+.. +
T Consensus        49 ~~L~~L~l~~n~-l~~--------~--~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~  113 (168)
T 2ell_A           49 VNLEFLSLINVG-LIS--------V--SNLPKLPKLKKLELSENRIFGGLDM----LAEKLPNLTHLNLSGNKLKDISTL  113 (168)
T ss_dssp             GGCCEEEEESSC-CCC--------C--SSCCCCSSCCEEEEESCCCCSCCCH----HHHHCTTCCEEECBSSSCCSSGGG
T ss_pred             CCCCEEeCcCCC-CCC--------h--hhhccCCCCCEEECcCCcCchHHHH----HHhhCCCCCEEeccCCccCcchhH
Confidence            457777777776 322        2  5678899999999999999987776    6777999999999999998542 2


Q ss_pred             hhccCCCCCCEEeCCCCcCccc
Q 038455          145 PYLNTLTSLTTLNLSYNKIEGS  166 (170)
Q Consensus       145 ~~~~~l~~L~~L~L~~N~l~g~  166 (170)
                      ..+..+++|++|++++|++++.
T Consensus       114 ~~l~~l~~L~~L~l~~N~l~~~  135 (168)
T 2ell_A          114 EPLKKLECLKSLDLFNCEVTNL  135 (168)
T ss_dssp             GGGSSCSCCCEEECCSSGGGTS
T ss_pred             HHHhcCCCCCEEEeeCCcCcch
Confidence            7899999999999999999843

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.19  E-value=4.5e-11  Score=86.91  Aligned_cols=67  Identities=21%  Similarity=0.397  Sum_probs=37.7

Q ss_pred             CCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCC-CCCCChhhccCCCCCCEEeCCCCcCc
Q 038455           92 MSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNY-VNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        92 ~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~-l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      +..|..+++|++|++++|.+++..|.    .+..+++|+.|++++|. +. .+| .+..+++|+.|++++|+++
T Consensus       105 ~~~l~~l~~L~~L~Ls~n~i~~~~~~----~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~  172 (197)
T 4ezg_A          105 IPNLSGLTSLTLLDISHSAHDDSILT----KINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH  172 (197)
T ss_dssp             SCCCTTCTTCCEEECCSSBCBGGGHH----HHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC
T ss_pred             ChhhcCCCCCCEEEecCCccCcHhHH----HHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc
Confidence            33455555666666666665554444    55556666666666665 33 343 4555666666666666555

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.19  E-value=1.4e-10  Score=88.69  Aligned_cols=71  Identities=24%  Similarity=0.299  Sum_probs=51.6

Q ss_pred             CCCcCCCCCCCCEEeccCCc-cCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455           91 NMSLFHPFEELQSLDLSENW-FTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus        91 ~~~~~~~l~~L~~L~ls~N~-l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g  165 (170)
                      .+..|..+++|++|++++|. +....|.    .+..+++|+.|++++|.+.+..|..+..+++|++|++++|++++
T Consensus        72 ~~~~~~~l~~L~~L~l~~n~~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  143 (285)
T 1ozn_A           72 DAAAFTGLALLEQLDLSDNAQLRSVDPA----TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA  143 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSCTTCCCCCTT----TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CHhhcCCccCCCEEeCCCCCCccccCHH----HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc
Confidence            34556777777777777776 6665455    67777777888887777776667777777788888888887773

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.19  E-value=4.1e-11  Score=104.50  Aligned_cols=106  Identities=24%  Similarity=0.259  Sum_probs=77.8

Q ss_pred             CCceEecCCCCCeEEeecCCcCccceecC--------------CC---CCCCCCCcCCCCCCCCEEeccCCccCccccCc
Q 038455           56 WEGVMCNATTRRVMQLSLNYTRRLKYYDR--------------TS---ASFMNMSLFHPFEELQSLDLSENWFTGIYENR  118 (170)
Q Consensus        56 w~gv~c~~~~~~v~~L~L~~~~~l~~~~~--------------~~---~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~  118 (170)
                      |..|.+  ...+++.|+|+++. ++....              ..   +..+.+..|.++++|++|+|++|.+.+..|. 
T Consensus        16 L~~vP~--lp~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~-   91 (844)
T 3j0a_A           16 LTQVPQ--VLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD-   91 (844)
T ss_dssp             SSCCCS--SCTTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT-
T ss_pred             CCCCCC--CCCCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh-
Confidence            777776  45678888888887 544421              11   1234466678888888888888888887777 


Q ss_pred             cccccCCCCCCCEEECCCCCCCCCChhh--ccCCCCCCEEeCCCCcCcccCC
Q 038455          119 AYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus       119 ~~~~~~~l~~L~~L~Ls~N~l~g~~p~~--~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                         .|..+++|++|+|++|.+.+.+|..  |..+++|++|+|++|.+++..|
T Consensus        92 ---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~  140 (844)
T 3j0a_A           92 ---AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL  140 (844)
T ss_dssp             ---SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC
T ss_pred             ---HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc
Confidence               7888888888888888888766654  7888888888888888875443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.18  E-value=1.6e-11  Score=105.79  Aligned_cols=88  Identities=18%  Similarity=0.189  Sum_probs=75.1

Q ss_pred             CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh
Q 038455           66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP  145 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~  145 (170)
                      ..++.|+|+++. +..        + +..+..+++|++|+|++|.|+ .+|.    .|..+++|+.|+|++|+|+ .+|.
T Consensus       224 ~~L~~L~Ls~n~-l~~--------l-~~~~~~l~~L~~L~Ls~N~l~-~lp~----~~~~l~~L~~L~Ls~N~l~-~lp~  287 (727)
T 4b8c_D          224 QLWHALDLSNLQ-IFN--------I-SANIFKYDFLTRLYLNGNSLT-ELPA----EIKNLSNLRVLDLSHNRLT-SLPA  287 (727)
T ss_dssp             CCCCEEECTTSC-CSC--------C-CGGGGGCCSCSCCBCTTSCCS-CCCG----GGGGGTTCCEEECTTSCCS-SCCS
T ss_pred             CCCcEEECCCCC-CCC--------C-ChhhcCCCCCCEEEeeCCcCc-ccCh----hhhCCCCCCEEeCcCCcCC-ccCh
Confidence            457788888877 332        2 234558999999999999999 5787    8999999999999999999 7899


Q ss_pred             hccCCCCCCEEeCCCCcCcccCCCC
Q 038455          146 YLNTLTSLTTLNLSYNKIEGSRTKQ  170 (170)
Q Consensus       146 ~~~~l~~L~~L~L~~N~l~g~iP~~  170 (170)
                      .|+.|++|++|+|++|.|+ .||.+
T Consensus       288 ~~~~l~~L~~L~L~~N~l~-~lp~~  311 (727)
T 4b8c_D          288 ELGSCFQLKYFYFFDNMVT-TLPWE  311 (727)
T ss_dssp             SGGGGTTCSEEECCSSCCC-CCCSS
T ss_pred             hhcCCCCCCEEECCCCCCC-ccChh
Confidence            9999999999999999997 88863

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.17  E-value=1.2e-10  Score=89.74  Aligned_cols=73  Identities=29%  Similarity=0.339  Sum_probs=48.9

Q ss_pred             CCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455           92 MSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus        92 ~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      +..+..+++|++|++++|.+++..|.    .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++++.+|
T Consensus       168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  240 (306)
T 2z66_A          168 PDIFTELRNLTFLDLSQCQLEQLSPT----AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK  240 (306)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred             hhHHhhCcCCCEEECCCCCcCCcCHH----HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence            44566667777777777777665555    66667777777777777765555566667777777777777765544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.17  E-value=1.2e-10  Score=89.01  Aligned_cols=66  Identities=29%  Similarity=0.290  Sum_probs=35.6

Q ss_pred             CCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455           95 FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        95 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      |..+++|++|++++|.+++..+.    .+..+++|+.|++++|.+.+..|..|..+++|+.|++++|+++
T Consensus       149 ~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  214 (285)
T 1ozn_A          149 FRDLGNLTHLFLHGNRISSVPER----AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS  214 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             hccCCCccEEECCCCcccccCHH----HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence            44455555555555555543333    3555555555555555555555555555555555555555555

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.17  E-value=2.5e-11  Score=90.58  Aligned_cols=89  Identities=15%  Similarity=0.111  Sum_probs=59.8

Q ss_pred             CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCc-cCccccCccccccCCCCCCCEEECCC-CCCCCCC
Q 038455           66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENW-FTGIYENRAYDSFGSLKQLKMLNLGF-NYVNDSI  143 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~-l~~~~p~~~~~~~~~l~~L~~L~Ls~-N~l~g~~  143 (170)
                      ..++.|+++++. ++.+        ++..|..+++|++|++++|. ++...+.    .|..+++|+.|++++ |++.+..
T Consensus        31 ~~l~~L~l~~n~-l~~i--------~~~~~~~l~~L~~L~l~~n~~l~~i~~~----~f~~l~~L~~L~l~~~n~l~~i~   97 (239)
T 2xwt_C           31 PSTQTLKLIETH-LRTI--------PSHAFSNLPNISRIYVSIDVTLQQLESH----SFYNLSKVTHIEIRNTRNLTYID   97 (239)
T ss_dssp             TTCCEEEEESCC-CSEE--------CTTTTTTCTTCCEEEEECCSSCCEECTT----TEESCTTCCEEEEEEETTCCEEC
T ss_pred             CcccEEEEeCCc-ceEE--------CHHHccCCCCCcEEeCCCCCCcceeCHh----HcCCCcCCcEEECCCCCCeeEcC
Confidence            357778887776 4433        34456677777777777775 6665444    566777777777776 7777555


Q ss_pred             hhhccCCCCCCEEeCCCCcCcccCC
Q 038455          144 LPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus       144 p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      +..|..+++|+.|++++|++++ +|
T Consensus        98 ~~~f~~l~~L~~L~l~~n~l~~-lp  121 (239)
T 2xwt_C           98 PDALKELPLLKFLGIFNTGLKM-FP  121 (239)
T ss_dssp             TTSEECCTTCCEEEEEEECCCS-CC
T ss_pred             HHHhCCCCCCCEEeCCCCCCcc-cc
Confidence            5567777777777777777663 55

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.15  E-value=8e-11  Score=83.28  Aligned_cols=90  Identities=22%  Similarity=0.134  Sum_probs=68.3

Q ss_pred             CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCcccc-CccccccCCCCCCCEEECCCCCCCCCCh
Q 038455           66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYE-NRAYDSFGSLKQLKMLNLGFNYVNDSIL  144 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p-~~~~~~~~~l~~L~~L~Ls~N~l~g~~p  144 (170)
                      .+++.|+++++. ++.        ..+..+..+++|++|++++|.+++..+ .    .+..+++|+.|++++|.+++..+
T Consensus        71 ~~L~~L~Ls~N~-l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~l~~l~~L~~L~l~~N~l~~~~~  137 (168)
T 2ell_A           71 PKLKKLELSENR-IFG--------GLDMLAEKLPNLTHLNLSGNKLKDISTLE----PLKKLECLKSLDLFNCEVTNLND  137 (168)
T ss_dssp             SSCCEEEEESCC-CCS--------CCCHHHHHCTTCCEEECBSSSCCSSGGGG----GGSSCSCCCEEECCSSGGGTSTT
T ss_pred             CCCCEEECcCCc-Cch--------HHHHHHhhCCCCCEEeccCCccCcchhHH----HHhcCCCCCEEEeeCCcCcchHH
Confidence            356677777766 322        234556678899999999999987432 4    78889999999999999986544


Q ss_pred             ---hhccCCCCCCEEeCCCCcCcccCCC
Q 038455          145 ---PYLNTLTSLTTLNLSYNKIEGSRTK  169 (170)
Q Consensus       145 ---~~~~~l~~L~~L~L~~N~l~g~iP~  169 (170)
                         ..+..+++|+.|++++|.+. ++|.
T Consensus       138 ~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          138 YRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             HHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             HHHHHHHhCccCcEecCCCCChh-hccc
Confidence               47888999999999999887 6665

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.15  E-value=1.1e-10  Score=97.76  Aligned_cols=78  Identities=26%  Similarity=0.408  Sum_probs=67.3

Q ss_pred             CCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCC-CChhhccCCCCCCEEeCCCCcCccc
Q 038455           88 SFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND-SILPYLNTLTSLTTLNLSYNKIEGS  166 (170)
Q Consensus        88 ~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g-~~p~~~~~l~~L~~L~L~~N~l~g~  166 (170)
                      ..+.+..|..+++|++|++++|.+.+..+.    .++.+++|++|++++|.+.+ .+|..|+.+++|++|++++|++++.
T Consensus        93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A           93 QSFSPGSFSGLTSLENLVAVETKLASLESF----PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             CCCCTTSSTTCTTCCEEECTTSCCCCSSSS----CCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred             cccChhhcCCcccCCEEEccCCcccccccc----ccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence            344567889999999999999999887667    89999999999999999986 6799999999999999999999865


Q ss_pred             CCC
Q 038455          167 RTK  169 (170)
Q Consensus       167 iP~  169 (170)
                      .|.
T Consensus       169 ~~~  171 (606)
T 3vq2_A          169 TVN  171 (606)
T ss_dssp             CTT
T ss_pred             Chh
Confidence            553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.14  E-value=1.6e-10  Score=87.97  Aligned_cols=72  Identities=19%  Similarity=0.205  Sum_probs=55.6

Q ss_pred             CCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455           90 MNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus        90 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g  165 (170)
                      +.+..|..+++|++|++++|.+++..+.    .+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus        67 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  138 (276)
T 2z62_A           67 IEDGAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS  138 (276)
T ss_dssp             ECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred             cCHHHccCCcCCCEEECCCCccCccChh----hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce
Confidence            3445677788888888888888776666    77888888888888888886666578888888888888888874

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.13  E-value=1.9e-10  Score=87.51  Aligned_cols=74  Identities=31%  Similarity=0.446  Sum_probs=62.7

Q ss_pred             CCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCC-CChhhccCCCCCCEEeCCCCcCccc
Q 038455           89 FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND-SILPYLNTLTSLTTLNLSYNKIEGS  166 (170)
Q Consensus        89 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g-~~p~~~~~l~~L~~L~L~~N~l~g~  166 (170)
                      .+.+..|..+++|++|++++|.+.+..+.    .+..+++|+.|++++|.+.+ .+|..+..+++|+.|++++|++++.
T Consensus        90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A           90 SLALGAFSGLSSLQKLVAVETNLASLENF----PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCCCSTTC----CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             ccChhhhcCCccccEEECCCCCccccCch----hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence            34456788899999999999999887665    78889999999999999986 3688999999999999999998853

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.13  E-value=1.7e-10  Score=89.99  Aligned_cols=98  Identities=20%  Similarity=0.315  Sum_probs=56.7

Q ss_pred             CCCCCceEecCC---------CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCcccccc
Q 038455           53 CDAWEGVMCNAT---------TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSF  123 (170)
Q Consensus        53 c~~w~gv~c~~~---------~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~  123 (170)
                      |. |..+.|...         ...++.|+++++. ++.+        .+..|..+++|++|++++|.+++..|.    .+
T Consensus        33 c~-l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~-i~~~--------~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~   98 (332)
T 2ft3_A           33 CH-LRVVQCSDLGLKAVPKEISPDTTLLDLQNND-ISEL--------RKDDFKGLQHLYALVLVNNKISKIHEK----AF   98 (332)
T ss_dssp             EE-TTEEECCSSCCSSCCSCCCTTCCEEECCSSC-CCEE--------CTTTTTTCTTCCEEECCSSCCCEECGG----GS
T ss_pred             cc-CCEEECCCCCccccCCCCCCCCeEEECCCCc-CCcc--------CHhHhhCCCCCcEEECCCCccCccCHh----Hh
Confidence            67 999998641         2356778887776 4433        233455555555555555555554444    45


Q ss_pred             CCCCCCCEEECCCCC---------------------CCCCChhhccCCCCCCEEeCCCCcCc
Q 038455          124 GSLKQLKMLNLGFNY---------------------VNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus       124 ~~l~~L~~L~Ls~N~---------------------l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      ..+++|++|++++|+                     +.+..+..|..+++|+.|++++|.++
T Consensus        99 ~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A           99 SPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             TTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             hCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence            555555555555554                     44333344666666666666666664

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.13  E-value=1.3e-10  Score=97.30  Aligned_cols=95  Identities=20%  Similarity=0.186  Sum_probs=56.0

Q ss_pred             CCeEEeecCCcCccceec--------------CCC--CCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCC
Q 038455           66 RRVMQLSLNYTRRLKYYD--------------RTS--ASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQL  129 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~--------------~~~--~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L  129 (170)
                      ..++.|+++++. ++.+.              +..  +..+.+..|..+++|++|++++|.+.+..|.    .|..+++|
T Consensus        33 ~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L  107 (606)
T 3t6q_A           33 NSTECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET----ALSGPKAL  107 (606)
T ss_dssp             TTCCEEECTTCC-CSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT----TTSSCTTC
T ss_pred             CcCcEEEccCCc-cCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh----hhcccccc
Confidence            457788888776 44431              111  1223344556666666666666666655555    56666666


Q ss_pred             CEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455          130 KMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus       130 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g  165 (170)
                      ++|++++|.+.+..|..++.+++|++|++++|++++
T Consensus       108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~  143 (606)
T 3t6q_A          108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS  143 (606)
T ss_dssp             CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC
T ss_pred             cEeeccccCcccCCcchhccCCcccEEECCCCcccc
Confidence            666666666665445556666666666666666664

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.12  E-value=1.2e-10  Score=97.76  Aligned_cols=85  Identities=22%  Similarity=0.264  Sum_probs=72.1

Q ss_pred             CeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhh
Q 038455           67 RVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY  146 (170)
Q Consensus        67 ~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~  146 (170)
                      .++.|+|+++. ++.+         +. |..+++|+.|+|++|.++ .+|.    .++.+++|+.|+|++|+|++ +| .
T Consensus       442 ~L~~L~Ls~n~-l~~l---------p~-~~~l~~L~~L~Ls~N~l~-~lp~----~~~~l~~L~~L~Ls~N~l~~-lp-~  503 (567)
T 1dce_A          442 DVRVLHLAHKD-LTVL---------CH-LEQLLLVTHLDLSHNRLR-ALPP----ALAALRCLEVLQASDNALEN-VD-G  503 (567)
T ss_dssp             TCSEEECTTSC-CSSC---------CC-GGGGTTCCEEECCSSCCC-CCCG----GGGGCTTCCEEECCSSCCCC-CG-G
T ss_pred             CceEEEecCCC-CCCC---------cC-ccccccCcEeecCccccc-ccch----hhhcCCCCCEEECCCCCCCC-Cc-c
Confidence            35667777776 4332         33 889999999999999999 4787    89999999999999999996 77 8


Q ss_pred             ccCCCCCCEEeCCCCcCcccC-CC
Q 038455          147 LNTLTSLTTLNLSYNKIEGSR-TK  169 (170)
Q Consensus       147 ~~~l~~L~~L~L~~N~l~g~i-P~  169 (170)
                      ++.+++|+.|+|++|+|++.+ |.
T Consensus       504 l~~l~~L~~L~Ls~N~l~~~~~p~  527 (567)
T 1dce_A          504 VANLPRLQELLLCNNRLQQSAAIQ  527 (567)
T ss_dssp             GTTCSSCCEEECCSSCCCSSSTTG
T ss_pred             cCCCCCCcEEECCCCCCCCCCCcH
Confidence            999999999999999999764 64

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.12  E-value=2.1e-10  Score=89.37  Aligned_cols=73  Identities=19%  Similarity=0.216  Sum_probs=61.4

Q ss_pred             CCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455           90 MNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus        90 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      +.+..|..+++|++|++++|.+++..+.    .+..+++|+.|++++|++. .+|..+..+++|++|++++|+++ .+|
T Consensus       207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~-~~~  279 (330)
T 1xku_A          207 VDAASLKGLNNLAKLGLSFNSISAVDNG----SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIG  279 (330)
T ss_dssp             ECTGGGTTCTTCCEEECCSSCCCEECTT----TGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCC
T ss_pred             cCHHHhcCCCCCCEEECCCCcCceeChh----hccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC-ccC
Confidence            3456688888999999999999887766    7888899999999999998 78888888999999999999988 444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.12  E-value=2.8e-10  Score=95.67  Aligned_cols=73  Identities=22%  Similarity=0.260  Sum_probs=52.9

Q ss_pred             CCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455           89 FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus        89 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g  165 (170)
                      .+++..|+.+++|++|+|++|.+++..+.    .|..+++|+.|+|++|.+.+..|..|..+++|+.|++++|.+++
T Consensus       113 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          113 YLPPHVFQNVPLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             CCCHHHHcCCCCCCEEEeeCCCCCCCCHH----HhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence            34455667777777888877777764444    46777777788887777777777777777777888877777764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.11  E-value=3.9e-10  Score=89.79  Aligned_cols=71  Identities=23%  Similarity=0.250  Sum_probs=46.3

Q ss_pred             CCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455           90 MNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        90 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      +.+..|..+++|++|++++|.++...+.    .|..+++|++|++++|.+.+..|..+..+++|+.|++++|+++
T Consensus       108 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          108 LPPHVFQNVPLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred             CCHHHhcCCCCCCEEECCCCccCcCCHH----HhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence            3445566677777777777776653333    3566677777777777776665666677777777777777665

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.10  E-value=3.7e-10  Score=91.45  Aligned_cols=66  Identities=29%  Similarity=0.368  Sum_probs=45.6

Q ss_pred             CCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455           95 FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        95 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      +..+++|+.|+|++|.+++..|.    .|..+++|+.|++++|++.+..|..|..+++|+.|+|++|+++
T Consensus       203 ~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  268 (440)
T 3zyj_A          203 LTPLIKLDELDLSGNHLSAIRPG----SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT  268 (440)
T ss_dssp             CTTCSSCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred             cCCCcccCEEECCCCccCccChh----hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC
Confidence            45556666666666666665555    6667777777777777777666666777777777777777776

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.10  E-value=2.1e-10  Score=97.28  Aligned_cols=76  Identities=21%  Similarity=0.236  Sum_probs=58.6

Q ss_pred             CCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455           89 FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus        89 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      .+.+..|..+++|++|++++|.++...+.    .|..+++|++|++++|++.+..|..|+.+++|++|++++|.+++..|
T Consensus        63 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  138 (680)
T 1ziw_A           63 KLEPELCQKLPMLKVLNLQHNELSQLSDK----TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL  138 (680)
T ss_dssp             CCCTTHHHHCTTCCEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC
T ss_pred             ccCHHHHhcccCcCEEECCCCccCccChh----hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCc
Confidence            34455667778888888888888775444    58888888888888888887666778888888888888888876554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.10  E-value=2e-10  Score=89.63  Aligned_cols=72  Identities=24%  Similarity=0.252  Sum_probs=61.2

Q ss_pred             CCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455           89 FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus        89 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g  165 (170)
                      .+.+..|..+++|+.|++++|.+.+..+.    .+..+++|+.|++++|++. .+|..+..+++|+.|++++|++++
T Consensus       207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~  278 (332)
T 2ft3_A          207 AIELEDLLRYSKLYRLGLGHNQIRMIENG----SLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK  278 (332)
T ss_dssp             CCCTTSSTTCTTCSCCBCCSSCCCCCCTT----GGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB
T ss_pred             ccCHHHhcCCCCCCEEECCCCcCCcCChh----HhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc
Confidence            34456788889999999999999887776    7888899999999999998 788888899999999999999883

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.09  E-value=4.3e-10  Score=91.37  Aligned_cols=66  Identities=32%  Similarity=0.367  Sum_probs=45.1

Q ss_pred             CCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455           95 FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        95 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      +..+++|+.|++++|.+++..|.    .|..+++|+.|++++|++.+..|..|..+++|+.|+|++|+++
T Consensus       214 ~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  279 (452)
T 3zyi_A          214 LTPLVGLEELEMSGNHFPEIRPG----SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS  279 (452)
T ss_dssp             CTTCTTCCEEECTTSCCSEECGG----GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             ccccccccEEECcCCcCcccCcc----cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence            44555666666666666665555    6667777777777777777666666777777777777777776

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.09  E-value=9.7e-11  Score=92.35  Aligned_cols=100  Identities=21%  Similarity=0.310  Sum_probs=80.0

Q ss_pred             CCCCCceEecCC---------CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCcccccc
Q 038455           53 CDAWEGVMCNAT---------TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSF  123 (170)
Q Consensus        53 c~~w~gv~c~~~---------~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~  123 (170)
                      |+ |..|.|...         ...++.|+|+++. ++        .+++..|.++++|++|+|++|.+.+.+|..   .|
T Consensus         9 C~-~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~-i~--------~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~---~f   75 (350)
T 4ay9_X            9 CS-NRVFLCQESKVTEIPSDLPRNAIELRFVLTK-LR--------VIQKGAFSGFGDLEKIEISQNDVLEVIEAD---VF   75 (350)
T ss_dssp             EE-TTEEEEESTTCCSCCTTCCTTCSEEEEESCC-CS--------EECTTSSTTCTTCCEEEEECCTTCCEECTT---SB
T ss_pred             ee-CCEEEecCCCCCccCcCcCCCCCEEEccCCc-CC--------CcCHHHHcCCCCCCEEECcCCCCCCccChh---Hh
Confidence            78 899999641         1356778888777 43        446678999999999999999997767642   57


Q ss_pred             CCCCCCCE-EECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455          124 GSLKQLKM-LNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus       124 ~~l~~L~~-L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g  165 (170)
                      .++++|+. +.++.|++....|..|..+++|++|++++|++++
T Consensus        76 ~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~  118 (350)
T 4ay9_X           76 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH  118 (350)
T ss_dssp             CSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS
T ss_pred             hcchhhhhhhcccCCcccccCchhhhhcccccccccccccccc
Confidence            88888775 5667799997778889999999999999999984

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.09  E-value=4e-10  Score=87.77  Aligned_cols=98  Identities=21%  Similarity=0.319  Sum_probs=59.9

Q ss_pred             CCCCCceEecCC---------CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCcccccc
Q 038455           53 CDAWEGVMCNAT---------TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSF  123 (170)
Q Consensus        53 c~~w~gv~c~~~---------~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~  123 (170)
                      |. |+.+.|...         ...++.|+++++. ++.        +.+..|..+++|++|++++|.+++..|.    .+
T Consensus        31 c~-l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~-i~~--------~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~   96 (330)
T 1xku_A           31 CH-LRVVQCSDLGLEKVPKDLPPDTALLDLQNNK-ITE--------IKDGDFKNLKNLHTLILINNKISKISPG----AF   96 (330)
T ss_dssp             EE-TTEEECTTSCCCSCCCSCCTTCCEEECCSSC-CCC--------BCTTTTTTCTTCCEEECCSSCCCCBCTT----TT
T ss_pred             CC-CeEEEecCCCccccCccCCCCCeEEECCCCc-CCE--------eChhhhccCCCCCEEECCCCcCCeeCHH----Hh
Confidence            67 899998631         2356777777776 333        2344566666666666666666665555    56


Q ss_pred             CCCCCCCEEECCCCCCC---------------------CCChhhccCCCCCCEEeCCCCcCc
Q 038455          124 GSLKQLKMLNLGFNYVN---------------------DSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus       124 ~~l~~L~~L~Ls~N~l~---------------------g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      ..+++|++|++++|.+.                     +..+..|..+++|+.|++++|.++
T Consensus        97 ~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  158 (330)
T 1xku_A           97 APLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK  158 (330)
T ss_dssp             TTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred             cCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence            66666666666666554                     333344566666666666666664

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.08  E-value=3.7e-10  Score=87.04  Aligned_cols=71  Identities=25%  Similarity=0.365  Sum_probs=60.5

Q ss_pred             CCCcCCCCCCCCEEeccCCccCc-cccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455           91 NMSLFHPFEELQSLDLSENWFTG-IYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus        91 ~~~~~~~l~~L~~L~ls~N~l~~-~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g  165 (170)
                      .+..|..+++|++|++++|.+.+ .+|.    .+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++
T Consensus       142 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  213 (306)
T 2z66_A          142 FNGIFNGLSSLEVLKMAGNSFQENFLPD----IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS  213 (306)
T ss_dssp             STTTTTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred             chhhcccCcCCCEEECCCCccccccchh----HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence            34567788889999999998876 5676    78889999999999999987778889999999999999999884

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.08  E-value=4.9e-10  Score=92.88  Aligned_cols=74  Identities=27%  Similarity=0.335  Sum_probs=63.7

Q ss_pred             CCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCCC
Q 038455           92 MSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTK  169 (170)
Q Consensus        92 ~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~  169 (170)
                      +..|..+++|++|++++|.+++..|.    .+..+++|+.|++++|++++..|..|..+++|+.|++++|++++.+|.
T Consensus       463 p~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          463 PDIFTELRNLTFLDLSQCQLEQLSPT----AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             hhhhhcccCCCEEECCCCccccCChh----hhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            45678888899999999999887777    888899999999999999887777888999999999999999888774

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.07  E-value=3.9e-10  Score=95.58  Aligned_cols=67  Identities=22%  Similarity=0.162  Sum_probs=59.0

Q ss_pred             CCCCCCEEeccCCccCccccCccccccCCCCCCCEEEC------CCCCCCCCChhhccCCCCCCEEeCCCCcCcccCCC
Q 038455           97 PFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNL------GFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTK  169 (170)
Q Consensus        97 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~L------s~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~  169 (170)
                      .+++|+.|++++|++++ +|.    .+..+++|+.|+|      ++|++.+.+|..+..+++|+.|+|++|++ +.||.
T Consensus       511 ~l~~L~~L~Ls~N~l~~-ip~----~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~  583 (636)
T 4eco_A          511 TLPYLVGIDLSYNSFSK-FPT----QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE  583 (636)
T ss_dssp             TCTTCCEEECCSSCCSS-CCC----GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred             cCCCcCEEECCCCCCCC-cCh----hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCH
Confidence            88899999999999988 787    8888999999999      56778888999999999999999999999 58886

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.07  E-value=3.3e-10  Score=92.42  Aligned_cols=68  Identities=28%  Similarity=0.320  Sum_probs=36.3

Q ss_pred             CcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455           93 SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        93 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      ..|..+++|++|++++|.+.+..|.    .|..+++|+.|++++|.+.+..|..|..+++|+.|++++|.++
T Consensus        98 ~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  165 (477)
T 2id5_A           98 GVFTGLSNLTKLDISENKIVILLDY----MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT  165 (477)
T ss_dssp             TSSTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred             ccccCCCCCCEEECCCCccccCChh----HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence            3444555555555555555554444    4555555555555555555444455555555555555555554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.07  E-value=1.5e-10  Score=95.25  Aligned_cols=66  Identities=32%  Similarity=0.408  Sum_probs=36.4

Q ss_pred             CCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCC-CChhhccCCCCCCEEeCCCCcCc
Q 038455           92 MSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND-SILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        92 ~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g-~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      +..|..+++|++|++++|+++. +|.    .  .+++|++|++++|.+.+ .+|..|+.+++|++|++++|.++
T Consensus        62 ~~~~~~l~~L~~L~Ls~N~l~~-lp~----~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~  128 (520)
T 2z7x_B           62 ISVFKFNQELEYLDLSHNKLVK-ISC----H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE  128 (520)
T ss_dssp             GGGGTTCTTCCEEECCSSCCCE-EEC----C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred             hHHhhcccCCCEEecCCCceee-cCc----c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence            3445555555555555555553 443    3  45555566666665554 34555556666666666655554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.06  E-value=4.2e-10  Score=93.27  Aligned_cols=76  Identities=18%  Similarity=0.190  Sum_probs=57.6

Q ss_pred             CCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc-cCC
Q 038455           90 MNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG-SRT  168 (170)
Q Consensus        90 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g-~iP  168 (170)
                      +.+..|..+++|++|++++|.+++..|.    .|..+++|++|++++|++.+..+..++.+++|++|++++|.+++ .+|
T Consensus        67 i~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp  142 (570)
T 2z63_A           67 IEDGAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP  142 (570)
T ss_dssp             ECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCC
T ss_pred             cCcccccCchhCCEEeCcCCcCCccCHh----hhcCccccccccccccccccCCCccccccccccEEecCCCccceecCh
Confidence            3455677788888888888888776666    78888888888888888875544468888888888888888875 455


Q ss_pred             C
Q 038455          169 K  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       143 ~  143 (570)
T 2z63_A          143 E  143 (570)
T ss_dssp             G
T ss_pred             h
Confidence            3

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.06  E-value=4.3e-10  Score=94.12  Aligned_cols=70  Identities=21%  Similarity=0.155  Sum_probs=41.5

Q ss_pred             CCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455           92 MSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus        92 ~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g  165 (170)
                      +..|..+++|++|++++|.+++..|.    .+..+++|++|++++|++.+..++.+..+++|++|++++|.+++
T Consensus        98 ~~~~~~l~~L~~L~L~~n~i~~l~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  167 (606)
T 3t6q_A           98 ETALSGPKALKHLFFIQTGISSIDFI----PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY  167 (606)
T ss_dssp             TTTTSSCTTCCEEECTTSCCSCGGGS----CCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE
T ss_pred             hhhhcccccccEeeccccCcccCCcc----hhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc
Confidence            44566666666666666666664444    56666666666666666665332333336666666666666654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.06  E-value=2.7e-10  Score=81.32  Aligned_cols=85  Identities=21%  Similarity=0.187  Sum_probs=68.9

Q ss_pred             CCeEEeecCCcCccceecCCCCCCCCCCcCCCCC-CCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCCh
Q 038455           66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFE-ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSIL  144 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~-~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p  144 (170)
                      ..++.|+++++. ++.+         + .+..+. +|++|++++|.+++.  .    .+..+++|+.|++++|.+++..|
T Consensus        19 ~~L~~L~l~~n~-l~~i---------~-~~~~~~~~L~~L~Ls~N~l~~~--~----~l~~l~~L~~L~Ls~N~l~~~~~   81 (176)
T 1a9n_A           19 VRDRELDLRGYK-IPVI---------E-NLGATLDQFDAIDFSDNEIRKL--D----GFPLLRRLKTLLVNNNRICRIGE   81 (176)
T ss_dssp             TSCEEEECTTSC-CCSC---------C-CGGGGTTCCSEEECCSSCCCEE--C----CCCCCSSCCEEECCSSCCCEECS
T ss_pred             CCceEEEeeCCC-Cchh---------H-HhhhcCCCCCEEECCCCCCCcc--c----ccccCCCCCEEECCCCcccccCc
Confidence            468899999987 4422         2 244444 999999999999985  4    79999999999999999996544


Q ss_pred             hhccCCCCCCEEeCCCCcCcccCC
Q 038455          145 PYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus       145 ~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      ..+..+++|++|++++|+++ .+|
T Consensus        82 ~~~~~l~~L~~L~L~~N~i~-~~~  104 (176)
T 1a9n_A           82 GLDQALPDLTELILTNNSLV-ELG  104 (176)
T ss_dssp             CHHHHCTTCCEEECCSCCCC-CGG
T ss_pred             chhhcCCCCCEEECCCCcCC-cch
Confidence            55699999999999999996 555

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.06  E-value=4e-10  Score=81.81  Aligned_cols=87  Identities=23%  Similarity=0.322  Sum_probs=65.6

Q ss_pred             CeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhh
Q 038455           67 RVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY  146 (170)
Q Consensus        67 ~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~  146 (170)
                      .++.|+++++. ++          ....+..+++|++|++++|.+++..+.    .+..+++|+.|++++|.+.+..|..
T Consensus        67 ~L~~L~l~~n~-~~----------~~~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~Ls~n~i~~~~~~~  131 (197)
T 4ezg_A           67 NIKDLTINNIH-AT----------NYNPISGLSNLERLRIMGKDVTSDKIP----NLSGLTSLTLLDISHSAHDDSILTK  131 (197)
T ss_dssp             TCSEEEEESCC-CS----------CCGGGTTCTTCCEEEEECTTCBGGGSC----CCTTCTTCCEEECCSSBCBGGGHHH
T ss_pred             CCCEEEccCCC-CC----------cchhhhcCCCCCEEEeECCccCcccCh----hhcCCCCCCEEEecCCccCcHhHHH
Confidence            46666666654 21          224677888888888888888876676    7888888888888888888777888


Q ss_pred             ccCCCCCCEEeCCCCcCcccCC
Q 038455          147 LNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus       147 ~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      +..+++|+.|++++|++.+.+|
T Consensus       132 l~~l~~L~~L~L~~n~~i~~~~  153 (197)
T 4ezg_A          132 INTLPKVNSIDLSYNGAITDIM  153 (197)
T ss_dssp             HTTCSSCCEEECCSCTBCCCCG
T ss_pred             HhhCCCCCEEEccCCCCccccH
Confidence            8888888888888887322444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.06  E-value=3.4e-10  Score=94.33  Aligned_cols=83  Identities=27%  Similarity=0.334  Sum_probs=50.8

Q ss_pred             CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh
Q 038455           66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP  145 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~  145 (170)
                      ..++.|+++++. ++        .+.+..|..+++|++|++++|.+++..|.    .|..+++|++|++++|+++ .+|.
T Consensus        52 ~~L~~L~Ls~N~-i~--------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~-~lp~  117 (562)
T 3a79_B           52 PRTKALSLSQNS-IS--------ELRMPDISFLSELRVLRLSHNRIRSLDFH----VFLFNQDLEYLDVSHNRLQ-NISC  117 (562)
T ss_dssp             TTCCEEECCSSC-CC--------CCCGGGTTTCTTCCEEECCSCCCCEECTT----TTTTCTTCCEEECTTSCCC-EECS
T ss_pred             CCcCEEECCCCC-cc--------ccChhhhccCCCccEEECCCCCCCcCCHH----HhCCCCCCCEEECCCCcCC-ccCc
Confidence            456777777776 33        23344566666666666666666665555    5666666666666666665 4444


Q ss_pred             hccCCCCCCEEeCCCCcCc
Q 038455          146 YLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus       146 ~~~~l~~L~~L~L~~N~l~  164 (170)
                      .  .+++|++|++++|+++
T Consensus       118 ~--~l~~L~~L~Ls~N~l~  134 (562)
T 3a79_B          118 C--PMASLRHLDLSFNDFD  134 (562)
T ss_dssp             C--CCTTCSEEECCSSCCS
T ss_pred             c--ccccCCEEECCCCCcc
Confidence            4  5566666666666655

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.05  E-value=1.2e-10  Score=90.47  Aligned_cols=66  Identities=21%  Similarity=0.197  Sum_probs=45.6

Q ss_pred             CCCCCCCEEeccCCccCccccCccccccCCC-----CCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCccc
Q 038455           96 HPFEELQSLDLSENWFTGIYENRAYDSFGSL-----KQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGS  166 (170)
Q Consensus        96 ~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l-----~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~  166 (170)
                      ..+++|++|++++|.+++. |.    .+..+     ++|++|++++|++.+..|..|+.+++|++|++++|++.|.
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~----~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  188 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DA----WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE  188 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SS----HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred             hcCCCccEEEccCCCCcch-hH----HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc
Confidence            6677777777777777765 54    55555     6777777777777766666777777777777777776543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.05  E-value=2.1e-10  Score=94.84  Aligned_cols=90  Identities=27%  Similarity=0.330  Sum_probs=64.5

Q ss_pred             CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCC-CCh
Q 038455           66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND-SIL  144 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g-~~p  144 (170)
                      .+++.|+++++. ++..        .+..|..+++|++|++++|.+++..|.    .++.+++|++|++++|.+.+ ..|
T Consensus        50 ~~L~~L~Ls~n~-i~~~--------~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~  116 (549)
T 2z81_A           50 ANLQVLILKSSR-INTI--------EGDAFYSLGSLEHLDLSDNHLSSLSSS----WFGPLSSLKYLNLMGNPYQTLGVT  116 (549)
T ss_dssp             TTCCEEECTTSC-CCEE--------CTTTTTTCTTCCEEECTTSCCCSCCHH----HHTTCTTCCEEECTTCCCSSSCSS
T ss_pred             CcccEEECCCCC-cCcc--------ChhhccccccCCEEECCCCccCccCHH----HhccCCCCcEEECCCCcccccchh
Confidence            467777887776 4433        455677788888888888888776554    57778888888888888775 355


Q ss_pred             hhccCCCCCCEEeCCCCcCcccCC
Q 038455          145 PYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus       145 ~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      ..++.+++|++|++++|.+.+.+|
T Consensus       117 ~~~~~l~~L~~L~L~~n~~~~~~~  140 (549)
T 2z81_A          117 SLFPNLTNLQTLRIGNVETFSEIR  140 (549)
T ss_dssp             CSCTTCTTCCEEEEEESSSCCEEC
T ss_pred             hhhhccCCccEEECCCCccccccC
Confidence            677777777888777777555555

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.03  E-value=8.2e-10  Score=93.67  Aligned_cols=74  Identities=30%  Similarity=0.275  Sum_probs=57.0

Q ss_pred             CCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCccc
Q 038455           89 FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGS  166 (170)
Q Consensus        89 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~  166 (170)
                      .+++..|..+++|++|++++|.+.+..|.    .|..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.
T Consensus        87 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  160 (680)
T 1ziw_A           87 QLSDKTFAFCTNLTELHLMSNSIQKIKNN----PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL  160 (680)
T ss_dssp             CCCTTTTTTCTTCSEEECCSSCCCCCCSC----TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred             ccChhhhccCCCCCEEECCCCccCccChh----HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence            44455677888888888888888776666    678888888888888888877777778888888888888877754

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.02  E-value=8.4e-10  Score=90.84  Aligned_cols=90  Identities=20%  Similarity=0.142  Sum_probs=58.3

Q ss_pred             CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCc--cccCccccccCCCCCCCEEECCCCCCCCCC
Q 038455           66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTG--IYENRAYDSFGSLKQLKMLNLGFNYVNDSI  143 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~--~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~  143 (170)
                      ..++.|+++++. +++        ..+..+..+++|++|++++|.+++  .+|.    .+..+++|+.|++++|.+.+.+
T Consensus       324 ~~L~~L~Ls~n~-l~~--------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~----~~~~l~~L~~L~Ls~N~l~~~l  390 (520)
T 2z7x_B          324 SPFLHLDFSNNL-LTD--------TVFENCGHLTELETLILQMNQLKELSKIAE----MTTQMKSLQQLDISQNSVSYDE  390 (520)
T ss_dssp             CCCCEEECCSSC-CCT--------TTTTTCCCCSSCCEEECCSSCCCBHHHHHH----HHTTCTTCCEEECCSSCCBCCG
T ss_pred             CcccEEEeECCc-cCh--------hhhhhhccCCCCCEEEccCCccCccccchH----HHhhCCCCCEEECCCCcCCccc
Confidence            345566666555 222        224556777777777777777775  3444    5777777777777777777656


Q ss_pred             hhh-ccCCCCCCEEeCCCCcCcccCC
Q 038455          144 LPY-LNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus       144 p~~-~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      |.. +..+++|+.|++++|++++.+|
T Consensus       391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~  416 (520)
T 2z7x_B          391 KKGDCSWTKSLLSLNMSSNILTDTIF  416 (520)
T ss_dssp             GGCSCCCCTTCCEEECCSSCCCGGGG
T ss_pred             ccchhccCccCCEEECcCCCCCcchh
Confidence            653 6666777777777777765554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.01  E-value=8.8e-10  Score=96.66  Aligned_cols=68  Identities=22%  Similarity=0.256  Sum_probs=59.0

Q ss_pred             CCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCC------CCCCCCChhhccCCCCCCEEeCCCCcCcccCCCC
Q 038455           97 PFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGF------NYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTKQ  170 (170)
Q Consensus        97 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~------N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~~  170 (170)
                      .+++|+.|+|++|.+++ +|.    .+..+++|+.|+|++      |++.+.+|..|..+++|+.|+|++|++ +.||.+
T Consensus       751 ~l~~L~~L~Ls~N~L~~-lp~----~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~  824 (876)
T 4ecn_A          751 TLPYLSNMDVSYNCFSS-FPT----QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK  824 (876)
T ss_dssp             TCTTCCEEECCSSCCSS-CCC----GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred             cCCCcCEEEeCCCCCCc-cch----hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh
Confidence            78899999999999988 677    788899999999876      778888999999999999999999999 688863

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.99  E-value=8.1e-10  Score=96.35  Aligned_cols=80  Identities=25%  Similarity=0.267  Sum_probs=67.3

Q ss_pred             CCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCCh-hhccCCCCCCEEeCCCCcCccc
Q 038455           88 SFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSIL-PYLNTLTSLTTLNLSYNKIEGS  166 (170)
Q Consensus        88 ~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~L~~N~l~g~  166 (170)
                      ..+.+..|.++++|++|+|++|.+++.+|...  .+..+++|++|+|++|.+.+..| ..|+++++|++|+|++|.+++.
T Consensus        86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~  163 (844)
T 3j0a_A           86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG--YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV  163 (844)
T ss_dssp             CEECTTSSCSCSSCCCEECTTCCCSSCCSTTC--CCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred             cccCHhHccCCcccCEeeCcCCCCCcccccCc--cccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence            34557789999999999999999998666510  38999999999999999987655 5799999999999999999876


Q ss_pred             CCC
Q 038455          167 RTK  169 (170)
Q Consensus       167 iP~  169 (170)
                      .|.
T Consensus       164 ~~~  166 (844)
T 3j0a_A          164 CEH  166 (844)
T ss_dssp             CSG
T ss_pred             CHH
Confidence            553

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.98  E-value=6.9e-10  Score=86.07  Aligned_cols=23  Identities=35%  Similarity=0.400  Sum_probs=13.6

Q ss_pred             CCCcCCCCCCCCEEeccCCccCc
Q 038455           91 NMSLFHPFEELQSLDLSENWFTG  113 (170)
Q Consensus        91 ~~~~~~~l~~L~~L~ls~N~l~~  113 (170)
                      .+..|..+++|++|++++|++.+
T Consensus       165 ~~~~~~~l~~L~~L~Ls~N~l~~  187 (312)
T 1wwl_A          165 SCEQVRVFPALSTLDLSDNPELG  187 (312)
T ss_dssp             CTTTCCCCSSCCEEECCSCTTCH
T ss_pred             hHHHhccCCCCCEEECCCCCcCc
Confidence            34455666666666666666554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.95  E-value=2.8e-09  Score=88.73  Aligned_cols=90  Identities=20%  Similarity=0.173  Sum_probs=50.6

Q ss_pred             CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCcc--ccCccccccCCCCCCCEEECCCCCCCCCC
Q 038455           66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGI--YENRAYDSFGSLKQLKMLNLGFNYVNDSI  143 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~--~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~  143 (170)
                      ..++.|+++++. +++        ..+..+..+++|++|++++|++++.  +|.    .+..+++|+.|++++|++.+.+
T Consensus       353 ~~L~~L~l~~n~-l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----~~~~l~~L~~L~l~~N~l~~~~  419 (562)
T 3a79_B          353 SSFTFLNFTQNV-FTD--------SVFQGCSTLKRLQTLILQRNGLKNFFKVAL----MTKNMSSLETLDVSLNSLNSHA  419 (562)
T ss_dssp             CCCCEEECCSSC-CCT--------TTTTTCCSCSSCCEEECCSSCCCBTTHHHH----TTTTCTTCCEEECTTSCCBSCC
T ss_pred             CCceEEECCCCc-ccc--------chhhhhcccCCCCEEECCCCCcCCcccchh----hhcCCCCCCEEECCCCcCCCcc
Confidence            456666666665 322        2234556666666666666666652  233    4566666666666666666534


Q ss_pred             hh-hccCCCCCCEEeCCCCcCcccCC
Q 038455          144 LP-YLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus       144 p~-~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      |. .+..+++|+.|++++|++++.+|
T Consensus       420 ~~~~~~~l~~L~~L~l~~n~l~~~~~  445 (562)
T 3a79_B          420 YDRTCAWAESILVLNLSSNMLTGSVF  445 (562)
T ss_dssp             SSCCCCCCTTCCEEECCSSCCCGGGG
T ss_pred             ChhhhcCcccCCEEECCCCCCCcchh
Confidence            43 35555555555555555554443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.94  E-value=1.7e-09  Score=89.05  Aligned_cols=65  Identities=23%  Similarity=0.269  Sum_probs=44.7

Q ss_pred             CCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCCC
Q 038455           97 PFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTK  169 (170)
Q Consensus        97 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~  169 (170)
                      .+++|+.|+|++|.+++. |     .+..+++|+.|+|++|.+++ +|+.+..+++|+.|+|++|.+++ +|.
T Consensus       167 ~l~~L~~L~Ls~N~l~~~-~-----~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~  231 (487)
T 3oja_A          167 SSDTLEHLNLQYNFIYDV-K-----GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEK  231 (487)
T ss_dssp             GTTTCCEEECTTSCCCEE-E-----CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECT
T ss_pred             hCCcccEEecCCCccccc-c-----ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cch
Confidence            556666666666666654 2     23357778888888888875 44457788888888888888874 554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.94  E-value=9.9e-10  Score=85.04  Aligned_cols=45  Identities=27%  Similarity=0.349  Sum_probs=28.2

Q ss_pred             CCCCCCCEEECCCCCCCCCChhhccCC---CCCCEEeCCCCcCcccCCC
Q 038455          124 GSLKQLKMLNLGFNYVNDSILPYLNTL---TSLTTLNLSYNKIEGSRTK  169 (170)
Q Consensus       124 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l---~~L~~L~L~~N~l~g~iP~  169 (170)
                      ..+++|++|+|++|++.+..|..+..+   ++|++|+|++|+|+ .+|.
T Consensus       221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~  268 (310)
T 4glp_A          221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPK  268 (310)
T ss_dssp             HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCS
T ss_pred             hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhh
Confidence            345666666666666666556555554   46677777777666 5554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.93  E-value=1.2e-09  Score=85.88  Aligned_cols=83  Identities=24%  Similarity=0.303  Sum_probs=56.3

Q ss_pred             CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh
Q 038455           66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP  145 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~  145 (170)
                      .+++.|+++++. ++.        +.+..|..+++|++|++++|.+++..+.    .+..+++|++|++++|++.. +|.
T Consensus        76 ~~L~~L~L~~n~-l~~--------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~-l~~  141 (353)
T 2z80_A           76 VNLQALVLTSNG-INT--------IEEDSFSSLGSLEHLDLSYNYLSNLSSS----WFKPLSSLTFLNLLGNPYKT-LGE  141 (353)
T ss_dssp             TTCCEEECTTSC-CCE--------ECTTTTTTCTTCCEEECCSSCCSSCCHH----HHTTCTTCSEEECTTCCCSS-SCS
T ss_pred             CCCCEEECCCCc-cCc--------cCHhhcCCCCCCCEEECCCCcCCcCCHh----HhCCCccCCEEECCCCCCcc-cCc
Confidence            356666666665 333        3445677777888888888887764443    47777778888888777774 443


Q ss_pred             --hccCCCCCCEEeCCCCc
Q 038455          146 --YLNTLTSLTTLNLSYNK  162 (170)
Q Consensus       146 --~~~~l~~L~~L~L~~N~  162 (170)
                        .+..+++|++|++++|.
T Consensus       142 ~~~~~~l~~L~~L~l~~n~  160 (353)
T 2z80_A          142 TSLFSHLTKLQILRVGNMD  160 (353)
T ss_dssp             SCSCTTCTTCCEEEEEESS
T ss_pred             hhhhccCCCCcEEECCCCc
Confidence              67777777777777774

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.93  E-value=3.3e-09  Score=82.91  Aligned_cols=70  Identities=30%  Similarity=0.370  Sum_probs=52.5

Q ss_pred             CcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455           93 SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus        93 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      ..+..+++|++|++++|.+++. +     .+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++..|
T Consensus       259 ~~~~~l~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          259 NAVKDLTKLKMLNVGSNQISDI-S-----VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCC-G-----GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             hhHhcCCCcCEEEccCCccCCC-h-----hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence            3466777777777777777763 3     56777888888888888887777778888888888888888875443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.92  E-value=1.7e-09  Score=83.67  Aligned_cols=70  Identities=21%  Similarity=0.015  Sum_probs=45.3

Q ss_pred             CCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455           96 HPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus        96 ~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g  165 (170)
                      ..+++|++|++++|.+.+..+......+..+++|+.|++++|.+.+..|..|+.+++|++|+|++|++.+
T Consensus       114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  183 (310)
T 4glp_A          114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLG  183 (310)
T ss_dssp             CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCH
T ss_pred             ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCcc
Confidence            6677777777777777664431000134456777777777777776666677777777777777777643

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.92  E-value=5.4e-09  Score=80.46  Aligned_cols=62  Identities=35%  Similarity=0.420  Sum_probs=34.4

Q ss_pred             CCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455           95 FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        95 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      +..+++|+.|++++|.+++.  .    .+..+++|+.|++++|++.+..|  +..+++|+.|++++|+++
T Consensus       130 l~~l~~L~~L~l~~n~l~~~--~----~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          130 LVHLPQLESLYLGNNKITDI--T----VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCC--G----GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             hcCCCCCCEEEccCCcCCcc--h----hhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence            44445555555555555442  2    45556666666666666654333  556666666666666655

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.90  E-value=2.4e-09  Score=83.13  Aligned_cols=61  Identities=26%  Similarity=0.256  Sum_probs=33.2

Q ss_pred             CCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455           98 FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        98 l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      +++|++|++++|.+++ +|.    .+..+++|+.|++++|++. .+|..+..+++|+.|++++|+++
T Consensus       190 l~~L~~L~Ls~N~l~~-l~~----~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          190 FAKLKTLDLSSNKLAF-MGP----EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CTTCCEEECCSSCCCE-ECG----GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred             cccCCEEECCCCcCCc-chh----hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence            4555555555555554 233    4555555555555555555 34555555555566666555554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.89  E-value=3.3e-09  Score=82.88  Aligned_cols=66  Identities=24%  Similarity=0.313  Sum_probs=57.8

Q ss_pred             CcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455           93 SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        93 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      +.+..+++|+.|++++|.+++..|.    .+..+++|+.|++++|.+++..|  +..+++|+.|++++|.|+
T Consensus       281 ~~~~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          281 SVLNNLSQLNSLFLNNNQLGNEDME----VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GGGGGCTTCSEEECCSSCCCGGGHH----HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             hhhcCCCCCCEEECcCCcCCCcChh----HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            4578899999999999999988777    89999999999999999997666  889999999999999986

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.89  E-value=8e-09  Score=79.47  Aligned_cols=65  Identities=37%  Similarity=0.464  Sum_probs=47.8

Q ss_pred             CcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455           93 SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus        93 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g  165 (170)
                      +.+..+++|++|++++|.+++. +     .+..+++|+.|++++|++.+.  ..+..+++|+.|++++|++++
T Consensus       106 ~~l~~l~~L~~L~L~~n~i~~~-~-----~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~  170 (291)
T 1h6t_A          106 SSLKDLKKLKSLSLEHNGISDI-N-----GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  170 (291)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCC-G-----GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred             hhhccCCCCCEEECCCCcCCCC-h-----hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence            3466777777777777777663 3     567778888888888888754  567778888888888888774

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.87  E-value=3.7e-09  Score=78.69  Aligned_cols=77  Identities=16%  Similarity=0.188  Sum_probs=60.0

Q ss_pred             CCCCCCCcCCCCCCCC-EEeccCCccCccccCccccccCCCCCCCEEECCCCC-CCCCChhhccCC-CCCCEEeCCCCcC
Q 038455           87 ASFMNMSLFHPFEELQ-SLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNY-VNDSILPYLNTL-TSLTTLNLSYNKI  163 (170)
Q Consensus        87 ~~~~~~~~~~~l~~L~-~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~-l~g~~p~~~~~l-~~L~~L~L~~N~l  163 (170)
                      +..+++..|..+++|+ .|++++|.++. +|..   .+.. ++|+.|++++|+ +.+..+..|..+ ++|+.|++++|++
T Consensus       143 l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~---~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l  217 (239)
T 2xwt_C          143 MTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGY---AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV  217 (239)
T ss_dssp             CCEECTTTTTTTBSSEEEEECCSCCCCE-ECTT---TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC
T ss_pred             hhhcCcccccchhcceeEEEcCCCCCcc-cCHh---hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc
Confidence            3344556688899999 99999999985 5541   3444 889999999995 886666778888 9999999999999


Q ss_pred             cccCCC
Q 038455          164 EGSRTK  169 (170)
Q Consensus       164 ~g~iP~  169 (170)
                      + .+|.
T Consensus       218 ~-~l~~  222 (239)
T 2xwt_C          218 T-ALPS  222 (239)
T ss_dssp             C-CCCC
T ss_pred             c-cCCh
Confidence            8 5665

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.85  E-value=1.4e-08  Score=85.91  Aligned_cols=62  Identities=35%  Similarity=0.420  Sum_probs=32.8

Q ss_pred             CCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455           95 FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        95 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      +..|++|+.|+|++|.+++.  .    .+..+++|+.|+|++|.|.+..|  +..+++|+.|+|++|+|+
T Consensus       127 l~~l~~L~~L~Ls~N~l~~l--~----~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          127 LVHLPQLESLYLGNNKITDI--T----VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             GGGCTTCSEEECCSSCCCCC--G----GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             ccCCCccCEEECCCCccCCc--h----hhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence            33444444444444444442  1    45555556666666666554433  555666666666666555

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.85  E-value=1.2e-08  Score=86.29  Aligned_cols=66  Identities=35%  Similarity=0.424  Sum_probs=47.1

Q ss_pred             CcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCccc
Q 038455           93 SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGS  166 (170)
Q Consensus        93 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~  166 (170)
                      +.+..+++|+.|+|++|.+.+ ++     .+..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|.+++.
T Consensus       103 ~~l~~l~~L~~L~Ls~N~l~~-l~-----~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~  168 (605)
T 1m9s_A          103 SSLKDLKKLKSLSLEHNGISD-IN-----GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI  168 (605)
T ss_dssp             TTSTTCTTCCEEECTTSCCCC-CG-----GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred             hhhccCCCCCEEEecCCCCCC-Cc-----cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence            456777777777777777776 33     567777777777777777754  5677777777777777777754

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.83  E-value=2e-08  Score=77.78  Aligned_cols=39  Identities=41%  Similarity=0.595  Sum_probs=17.0

Q ss_pred             CCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455          124 GSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus       124 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      ..+++|+.|++++|.+.+ ++. +..+++|+.|++++|+++
T Consensus       148 ~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          148 AGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             GGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred             cCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccC
Confidence            334444444444444442 222 444444444444444444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.82  E-value=2.2e-08  Score=77.51  Aligned_cols=62  Identities=23%  Similarity=0.389  Sum_probs=29.5

Q ss_pred             CCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455           95 FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        95 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      +..+++|++|++++|.+++ ++     .+..+++|+.|++++|.+.+..+  +..+++|+.|++++|+++
T Consensus       103 ~~~l~~L~~L~l~~n~l~~-~~-----~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  164 (308)
T 1h6u_A          103 IAGLQSIKTLDLTSTQITD-VT-----PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS  164 (308)
T ss_dssp             GTTCTTCCEEECTTSCCCC-CG-----GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             hcCCCCCCEEECCCCCCCC-ch-----hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence            4445555555555555544 22     24444555555555555543222  444555555555555444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.82  E-value=3.6e-09  Score=88.92  Aligned_cols=102  Identities=18%  Similarity=0.164  Sum_probs=52.8

Q ss_pred             CCCCCCCCCCCCCCCC-----CCCCce-EecCCCCCeEEeecCCcCccceec-----------CCCC--CCCCCCcCCCC
Q 038455           38 LPSWVGEDDGMPSDCC-----DAWEGV-MCNATTRRVMQLSLNYTRRLKYYD-----------RTSA--SFMNMSLFHPF   98 (170)
Q Consensus        38 l~~W~~~~~~~~~~~c-----~~w~gv-~c~~~~~~v~~L~L~~~~~l~~~~-----------~~~~--~~~~~~~~~~l   98 (170)
                      +.+|..     ...+|     . |.++ .|.  ..+++.|+++++. ++++.           +..+  ..++    ..+
T Consensus        33 l~~W~~-----~~~~~~~~~~~-~~~l~~C~--~~~L~~L~Ls~n~-L~~lp~~l~~~L~~L~Ls~N~l~~ip----~~l   99 (571)
T 3cvr_A           33 WDKWEK-----QALPGENRNEA-VSLLKECL--INQFSELQLNRLN-LSSLPDNLPPQITVLEITQNALISLP----ELP   99 (571)
T ss_dssp             HHHHHT-----TCCTTCCHHHH-HHHHHHHH--HTTCSEEECCSSC-CSCCCSCCCTTCSEEECCSSCCSCCC----CCC
T ss_pred             HHHHhc-----cCCccccccch-hhhccccc--cCCccEEEeCCCC-CCccCHhHcCCCCEEECcCCCCcccc----ccc
Confidence            345655     35667     5 8888 674  3467888888776 54421           1111  1111    234


Q ss_pred             CCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455           99 EELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        99 ~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      ++|++|++++|.|++ +|.     +..  +|+.|++++|+|++ +|.   .+++|+.|+|++|+|+
T Consensus       100 ~~L~~L~Ls~N~l~~-ip~-----l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~  153 (571)
T 3cvr_A          100 ASLEYLDACDNRLST-LPE-----LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT  153 (571)
T ss_dssp             TTCCEEECCSSCCSC-CCC-----CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred             CCCCEEEccCCCCCC-cch-----hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC
Confidence            566666666666665 442     211  45555555555553 333   3444555555555444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.78  E-value=6.5e-09  Score=85.54  Aligned_cols=66  Identities=29%  Similarity=0.248  Sum_probs=34.4

Q ss_pred             cCCCCCCCCEEeccCCccCccccCccccccC-CCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455           94 LFHPFEELQSLDLSENWFTGIYENRAYDSFG-SLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus        94 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~-~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g  165 (170)
                      .|..+++|+.|++++|.+++.+|.    .+. .+++|+.|+|++|.|++. |. +..+++|+.|+|++|.+++
T Consensus       139 ~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~  205 (487)
T 3oja_A          139 DEGCRSRVQYLDLKLNEIDTVNFA----ELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF  205 (487)
T ss_dssp             CGGGGSSEEEEECTTSCCCEEEGG----GGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE
T ss_pred             hhcCCCCCCEEECCCCCCCCcChH----HHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC
Confidence            344455555555555555554444    343 455555555555555533 21 2235566666666666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.78  E-value=9e-09  Score=78.12  Aligned_cols=62  Identities=23%  Similarity=0.311  Sum_probs=29.8

Q ss_pred             CCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455           95 FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        95 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      +..+++|+.|++++|++++. +     .+..+++|+.|++++|++.+.  ..+..+++|+.|++++|+++
T Consensus       124 l~~l~~L~~L~Ls~N~i~~~-~-----~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          124 LIHLKNLEILSIRNNKLKSI-V-----MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             GTTCTTCCEEECTTSCCCBC-G-----GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             hcCcccccEEECCCCcCCCC-h-----HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence            44444555555555554442 2     344445555555555555433  33444555555555555544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.77  E-value=1.3e-08  Score=78.94  Aligned_cols=65  Identities=23%  Similarity=0.281  Sum_probs=45.5

Q ss_pred             CCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCCC
Q 038455           97 PFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTK  169 (170)
Q Consensus        97 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~  169 (170)
                      .+++|++|++++|.+++. +     ....+++|+.|++++|++.+ +|+.+..+++|+.|++++|+++ .+|.
T Consensus       167 ~l~~L~~L~L~~N~l~~~-~-----~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~  231 (317)
T 3o53_A          167 SSDTLEHLNLQYNFIYDV-K-----GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEK  231 (317)
T ss_dssp             GTTTCCEEECTTSCCCEE-E-----CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECT
T ss_pred             ccCcCCEEECCCCcCccc-c-----cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhh
Confidence            456666666666666653 3     23347788888888888874 4555788888888888888887 4554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.76  E-value=3.4e-08  Score=74.90  Aligned_cols=59  Identities=29%  Similarity=0.331  Sum_probs=36.0

Q ss_pred             CCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455           99 EELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus        99 ~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g  165 (170)
                      ++|+.|++++|.+++ ++     .+..+++|+.|++++|++++. | .+..+++|+.|++++|++++
T Consensus       106 ~~L~~L~L~~N~l~~-~~-----~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A          106 ACLSRLFLDNNELRD-TD-----SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             SSCCEEECCSSCCSB-SG-----GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred             CcccEEEccCCccCC-Ch-----hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence            445555555555544 22     466667777777777777643 3 56667777777777777664

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.68  E-value=7e-08  Score=78.60  Aligned_cols=63  Identities=25%  Similarity=0.349  Sum_probs=37.5

Q ss_pred             CCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455           95 FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus        95 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g  165 (170)
                      +..+++|+.|++++|.+++. +     .+..+++|+.|++++|++.+..|  +..+++|+.|++++|++++
T Consensus       327 ~~~l~~L~~L~l~~n~l~~~-~-----~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          327 VSSLTKLQRLFFYNNKVSDV-S-----SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCC-G-----GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             hccCccCCEeECCCCccCCc-h-----hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            34445555555555555442 2     45666666666666666665554  6666667777777776664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.68  E-value=2.3e-08  Score=76.41  Aligned_cols=67  Identities=27%  Similarity=0.249  Sum_probs=55.1

Q ss_pred             CCCCCCEEeccCCccCc--cccCccccccCCCCCCCEEECCCCCCCCCChhhccCCC--CCCEEeCCCCcCcccCCC
Q 038455           97 PFEELQSLDLSENWFTG--IYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLT--SLTTLNLSYNKIEGSRTK  169 (170)
Q Consensus        97 ~l~~L~~L~ls~N~l~~--~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~--~L~~L~L~~N~l~g~iP~  169 (170)
                      .+++|+.|+|++|+|++  .+|.    .+..+++|+.|+|++|+|.+.  ..+..+.  +|+.|+|++|++++.+|.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~----~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSS----IVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTT----HHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred             hCCCCCEEECCCCCCCCCccchh----HHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence            47899999999999998  3445    667899999999999999964  3344444  999999999999987763

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.66  E-value=1.1e-07  Score=77.51  Aligned_cols=66  Identities=27%  Similarity=0.256  Sum_probs=40.7

Q ss_pred             CCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455           95 FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus        95 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      +..+++|+.|++++|.+++..      .+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|++++.+|
T Consensus       305 ~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          305 ISNLKNLTYLTLYFNNISDIS------PVSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             GGGCTTCSEEECCSSCCSCCG------GGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred             hcCCCCCCEEECcCCcCCCch------hhccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence            444555555555555555532      244566666677766666643  356677777777777777776544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.65  E-value=9.3e-08  Score=78.08  Aligned_cols=61  Identities=23%  Similarity=0.236  Sum_probs=49.7

Q ss_pred             CCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455           95 FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus        95 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g  165 (170)
                      +..+++|++|++++|.+++.       .++.+++|++|++++|++.+ +|  ++.+++|++|++++|++++
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~~-------~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~  141 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTNL-------DVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE  141 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSCC-------CCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC
T ss_pred             cccCCCCCEEECcCCCCcee-------ecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce
Confidence            67788888888888888773       36678888899998888886 44  7888889999999888875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.63  E-value=5.6e-08  Score=82.42  Aligned_cols=63  Identities=27%  Similarity=0.157  Sum_probs=51.3

Q ss_pred             CCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455           97 PFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus        97 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      .+++|++|++++|.|+. +|.       .+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|
T Consensus       239 ~l~~L~~L~Ls~N~L~~-lp~-------~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~  301 (622)
T 3g06_A          239 LPSELKELMVSGNRLTS-LPM-------LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL  301 (622)
T ss_dssp             CCTTCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred             CCCcCcEEECCCCCCCc-CCc-------ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence            45677777777777775 442       4678999999999999 788889999999999999999987654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.62  E-value=2.4e-08  Score=77.53  Aligned_cols=66  Identities=23%  Similarity=0.179  Sum_probs=43.0

Q ss_pred             CCCCCCCCEEeccCCccCcc-ccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCC-cCc
Q 038455           95 FHPFEELQSLDLSENWFTGI-YENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYN-KIE  164 (170)
Q Consensus        95 ~~~l~~L~~L~ls~N~l~~~-~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N-~l~  164 (170)
                      +..+++|++|++++|.+++. +|.    .+..+++|+.|++++|.+.+..|..+..+++|++|++++| .++
T Consensus        89 ~~~~~~L~~L~L~~~~l~~~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~  156 (336)
T 2ast_B           89 HFSPFRVQHMDLSNSVIEVSTLHG----ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS  156 (336)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHH----HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC
T ss_pred             hccCCCCCEEEccCCCcCHHHHHH----HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence            34566777777777776654 554    5666667777777777666666666666667777777666 454

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.61  E-value=3.6e-10  Score=82.16  Aligned_cols=66  Identities=21%  Similarity=0.176  Sum_probs=41.0

Q ss_pred             CCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCCh-hhccCCCCCCEEeCCCCcCcccCC
Q 038455           97 PFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSIL-PYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus        97 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      .+++|++|++++|.+++ +|     .+..+++|+.|++++|++.+..+ ..+..+++|++|++++|++++.+|
T Consensus        91 ~~~~L~~L~L~~N~l~~-l~-----~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  157 (198)
T 1ds9_A           91 VADTLEELWISYNQIAS-LS-----GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             HHHHCSEEEEEEEECCC-HH-----HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred             cCCcCCEEECcCCcCCc-CC-----ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence            34455555555555554 23     35566677777777777763222 367777888888888887765543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.60  E-value=4.6e-08  Score=79.82  Aligned_cols=64  Identities=20%  Similarity=0.236  Sum_probs=29.8

Q ss_pred             CCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCC--CChhhccCC-------------CCCCEEeCCCCc
Q 038455           98 FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND--SILPYLNTL-------------TSLTTLNLSYNK  162 (170)
Q Consensus        98 l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g--~~p~~~~~l-------------~~L~~L~L~~N~  162 (170)
                      +++|++|++++|.++. +|     .  .+++|+.|++++|++.+  .+|..+..+             ++|+.|++++|+
T Consensus       336 ~~~L~~L~L~~N~l~~-lp-----~--~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~  407 (454)
T 1jl5_A          336 PPRLERLIASFNHLAE-VP-----E--LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP  407 (454)
T ss_dssp             CTTCCEEECCSSCCSC-CC-----C--CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred             CCcCCEEECCCCcccc-cc-----c--hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence            3566666666666664 44     2  35677778888887777  667776666             677888888887


Q ss_pred             Ccc--cCCC
Q 038455          163 IEG--SRTK  169 (170)
Q Consensus       163 l~g--~iP~  169 (170)
                      ++|  .+|.
T Consensus       408 l~~~~~iP~  416 (454)
T 1jl5_A          408 LREFPDIPE  416 (454)
T ss_dssp             ---------
T ss_pred             CCccccchh
Confidence            776  6664

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.60  E-value=1.9e-07  Score=76.19  Aligned_cols=61  Identities=25%  Similarity=0.264  Sum_probs=37.7

Q ss_pred             CCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455           95 FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus        95 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g  165 (170)
                      +..+++|+.|++++|.+++.       .+..+++|+.|++++|++++ +|  +..+++|+.|++++|++++
T Consensus       187 l~~l~~L~~L~l~~N~l~~~-------~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          187 VSQNKLLNRLNCDTNNITKL-------DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSCC-------CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred             cccCCCCCEEECcCCcCCee-------ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence            44555555555555555542       25556667777777777765 44  6666677777777776664

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.59  E-value=2e-07  Score=76.04  Aligned_cols=64  Identities=17%  Similarity=0.204  Sum_probs=50.3

Q ss_pred             cCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455           94 LFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus        94 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      .|..+++|++|++++|++++ +|.    .+   .+|++|++++|++.+ +| .++.+++|+.|++++|++++ +|
T Consensus       148 ~~~~l~~L~~L~l~~N~l~~-lp~----~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~  211 (454)
T 1jl5_A          148 ELQNSSFLKIIDVDNNSLKK-LPD----LP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LP  211 (454)
T ss_dssp             CCTTCTTCCEEECCSSCCSC-CCC----CC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CC
T ss_pred             ccCCCCCCCEEECCCCcCcc-cCC----Cc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CC
Confidence            47888889999999998887 554    32   478888888888885 55 58888888888888888875 44

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.56  E-value=7e-08  Score=81.06  Aligned_cols=61  Identities=20%  Similarity=0.199  Sum_probs=43.6

Q ss_pred             CCCCEEeccCCccCccccCccccccCCCCCC-------CEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455           99 EELQSLDLSENWFTGIYENRAYDSFGSLKQL-------KMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus        99 ~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L-------~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      ++|+.|+|++|.|+. +|.     +..  +|       +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|
T Consensus       180 ~~L~~L~Ls~N~L~~-lp~-----~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          180 ESLEALDVSTNLLES-LPA-----VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             TTCCEEECCSSCCSS-CCC-----CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred             CCCCEEECcCCCCCc-hhh-----HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence            567777777777663 442     221  55       88888888888 578777778899999999999887765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.54  E-value=1.3e-08  Score=80.90  Aligned_cols=69  Identities=17%  Similarity=0.289  Sum_probs=42.9

Q ss_pred             cCCCCCCCCEEeccCCccCcc----ccCcccccc--CCCCCCCEEECCCCCCCC----CChhhc-cCCCCCCEEeCCCCc
Q 038455           94 LFHPFEELQSLDLSENWFTGI----YENRAYDSF--GSLKQLKMLNLGFNYVND----SILPYL-NTLTSLTTLNLSYNK  162 (170)
Q Consensus        94 ~~~~l~~L~~L~ls~N~l~~~----~p~~~~~~~--~~l~~L~~L~Ls~N~l~g----~~p~~~-~~l~~L~~L~L~~N~  162 (170)
                      .+..+++|++|+|++|.+++.    ++.    .+  +.+++|+.|+|++|.+++    .+|..+ .++++|+.|++++|+
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~----~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVD----AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHH----HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHH----HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            345566666677766666654    233    33  336677777777777765    366655 556777777777777


Q ss_pred             Cccc
Q 038455          163 IEGS  166 (170)
Q Consensus       163 l~g~  166 (170)
                      +++.
T Consensus       315 l~~~  318 (386)
T 2ca6_A          315 FSEE  318 (386)
T ss_dssp             SCTT
T ss_pred             CCcc
Confidence            7654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.54  E-value=9.9e-10  Score=79.80  Aligned_cols=82  Identities=23%  Similarity=0.302  Sum_probs=68.8

Q ss_pred             CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh
Q 038455           66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP  145 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~  145 (170)
                      ..++.|+++++. ++.+         + .+..+++|++|++++|.++. +|.    .+..+++|+.|++++|++.+ +| 
T Consensus        48 ~~L~~L~ls~n~-l~~l---------~-~~~~l~~L~~L~l~~n~l~~-l~~----~~~~~~~L~~L~L~~N~l~~-l~-  109 (198)
T 1ds9_A           48 KACKHLALSTNN-IEKI---------S-SLSGMENLRILSLGRNLIKK-IEN----LDAVADTLEELWISYNQIAS-LS-  109 (198)
T ss_dssp             TTCSEEECSEEE-ESCC---------C-CHHHHTTCCEEEEEEEEECS-CSS----HHHHHHHCSEEEEEEEECCC-HH-
T ss_pred             CCCCEEECCCCC-Cccc---------c-ccccCCCCCEEECCCCCccc-ccc----hhhcCCcCCEEECcCCcCCc-CC-
Confidence            468888888887 4432         2 67889999999999999985 676    77778999999999999995 55 


Q ss_pred             hccCCCCCCEEeCCCCcCcc
Q 038455          146 YLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus       146 ~~~~l~~L~~L~L~~N~l~g  165 (170)
                      .+..+++|+.|++++|++++
T Consensus       110 ~~~~l~~L~~L~l~~N~i~~  129 (198)
T 1ds9_A          110 GIEKLVNLRVLYMSNNKITN  129 (198)
T ss_dssp             HHHHHHHSSEEEESEEECCC
T ss_pred             ccccCCCCCEEECCCCcCCc
Confidence            68899999999999999983

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.52  E-value=1.5e-08  Score=80.09  Aligned_cols=66  Identities=23%  Similarity=0.359  Sum_probs=38.7

Q ss_pred             CCCCEEeccCCccCccccCccccccCCC-CCCCEEECCCCCCCCCChhhc----cC-CCCCCEEeCCCCcCc
Q 038455           99 EELQSLDLSENWFTGIYENRAYDSFGSL-KQLKMLNLGFNYVNDSILPYL----NT-LTSLTTLNLSYNKIE  164 (170)
Q Consensus        99 ~~L~~L~ls~N~l~~~~p~~~~~~~~~l-~~L~~L~Ls~N~l~g~~p~~~----~~-l~~L~~L~L~~N~l~  164 (170)
                      ++|++|++++|.+++..+..-...+..+ ++|+.|++++|.+++..+..+    .. .++|++|+|++|.++
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence            6677777777777654443000013333 677777777777765555443    23 257777777777776

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.49  E-value=3e-08  Score=78.77  Aligned_cols=68  Identities=29%  Similarity=0.347  Sum_probs=52.9

Q ss_pred             cCCCCCCCCEEeccCCccC----ccccCccccccCCCCCCCEEECCCCCCCCC----Chhhcc--CCCCCCEEeCCCCcC
Q 038455           94 LFHPFEELQSLDLSENWFT----GIYENRAYDSFGSLKQLKMLNLGFNYVNDS----ILPYLN--TLTSLTTLNLSYNKI  163 (170)
Q Consensus        94 ~~~~l~~L~~L~ls~N~l~----~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~--~l~~L~~L~L~~N~l  163 (170)
                      .+..+++|++|+|++|.++    ..+|.    .+..+++|+.|+|++|.+++.    +|..+.  .+++|+.|+|++|.+
T Consensus       211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~----~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i  286 (386)
T 2ca6_A          211 GLAYCQELKVLDLQDNTFTHLGSSALAI----ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI  286 (386)
T ss_dssp             TGGGCTTCCEEECCSSCCHHHHHHHHHH----HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             HhhcCCCccEEECcCCCCCcHHHHHHHH----HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence            5667888888888888885    55666    677888888888888888765    556663  388888888888888


Q ss_pred             cc
Q 038455          164 EG  165 (170)
Q Consensus       164 ~g  165 (170)
                      ++
T Consensus       287 ~~  288 (386)
T 2ca6_A          287 EL  288 (386)
T ss_dssp             BH
T ss_pred             CH
Confidence            75

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.48  E-value=2.9e-08  Score=77.08  Aligned_cols=68  Identities=22%  Similarity=0.252  Sum_probs=49.9

Q ss_pred             cCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCC-CCCCC-ChhhccCCCCCCEEeCCCC-cCcc
Q 038455           94 LFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFN-YVNDS-ILPYLNTLTSLTTLNLSYN-KIEG  165 (170)
Q Consensus        94 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N-~l~g~-~p~~~~~l~~L~~L~L~~N-~l~g  165 (170)
                      .+..+++|++|++++|.+++..+.    .+..+++|+.|++++| .+++. +|..+..+++|+.|++++| .+++
T Consensus       113 ~~~~~~~L~~L~L~~~~l~~~~~~----~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~  183 (336)
T 2ast_B          113 ILSQCSKLQNLSLEGLRLSDPIVN----TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE  183 (336)
T ss_dssp             HHTTBCCCSEEECTTCBCCHHHHH----HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH
T ss_pred             HHhhCCCCCEEeCcCcccCHHHHH----HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh
Confidence            456777888888888887766666    6777888888888887 56642 5666777778888888777 6653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.41  E-value=4.6e-08  Score=82.94  Aligned_cols=59  Identities=22%  Similarity=0.123  Sum_probs=36.6

Q ss_pred             CCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455           97 PFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus        97 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      .+++|++|+|++|+++. +|.       .+++|+.|++++|.+++ +|.   .+++|+.|++++|+++ .+|
T Consensus        79 ~l~~L~~L~Ls~N~l~~-lp~-------~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp  137 (622)
T 3g06_A           79 LPPELRTLEVSGNQLTS-LPV-------LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLP  137 (622)
T ss_dssp             CCTTCCEEEECSCCCSC-CCC-------CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCC
T ss_pred             cCCCCCEEEcCCCcCCc-CCC-------CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCC
Confidence            35667777777777765 442       35677777777777774 343   4456666666666665 344

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.36  E-value=9.3e-07  Score=69.42  Aligned_cols=75  Identities=23%  Similarity=0.136  Sum_probs=55.1

Q ss_pred             CCCCCcCCCCC-CCCEEeccCCccCccccCccccccCCCCCCCEEECCC-CCCCCCChhhccCCCCCCEEeCCCCcCccc
Q 038455           89 FMNMSLFHPFE-ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGF-NYVNDSILPYLNTLTSLTTLNLSYNKIEGS  166 (170)
Q Consensus        89 ~~~~~~~~~l~-~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~  166 (170)
                      .++...|..+. .++.|++++|.|+. +|.    ......+|+.|++++ |.+....+..|..+++|+.|+|++|+|+ .
T Consensus       143 ~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~----~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~  216 (350)
T 4ay9_X          143 TIERNSFVGLSFESVILWLNKNGIQE-IHN----SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-S  216 (350)
T ss_dssp             EECTTSSTTSBSSCEEEECCSSCCCE-ECT----TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-C
T ss_pred             cccccchhhcchhhhhhccccccccC-CCh----hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-c
Confidence            34445555654 58889999999987 454    455667899999975 5566433356889999999999999998 6


Q ss_pred             CCC
Q 038455          167 RTK  169 (170)
Q Consensus       167 iP~  169 (170)
                      +|.
T Consensus       217 lp~  219 (350)
T 4ay9_X          217 LPS  219 (350)
T ss_dssp             CCS
T ss_pred             cCh
Confidence            775

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.32  E-value=8.2e-07  Score=69.12  Aligned_cols=87  Identities=18%  Similarity=0.156  Sum_probs=68.5

Q ss_pred             CeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCC-EEECCCCCCCCCChh
Q 038455           67 RVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLK-MLNLGFNYVNDSILP  145 (170)
Q Consensus        67 ~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~-~L~Ls~N~l~g~~p~  145 (170)
                      .++.++|+++.         +..++...|..+++|+.|+++.| +..+.+.    .|.++++|+ .+++.+ .+...-+.
T Consensus       227 ~L~~l~L~~n~---------i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~----aF~~~~~L~~~l~l~~-~l~~I~~~  291 (329)
T 3sb4_A          227 NLVSLDISKTN---------ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQR----VFSNCGRLAGTLELPA-SVTAIEFG  291 (329)
T ss_dssp             TCCEEECTTBC---------CCEECTTTTTTCTTCCEEECCTT-CCEECTT----TTTTCTTCCEEEEECT-TCCEECTT
T ss_pred             CCeEEECCCCC---------cceecHhhhhCCCCCCEEECCcc-cceehHH----HhhCChhccEEEEEcc-cceEEchh
Confidence            56666666655         34556778999999999999998 7765555    899999999 999988 77755567


Q ss_pred             hccCCCCCCEEeCCCCcCcccCCC
Q 038455          146 YLNTLTSLTTLNLSYNKIEGSRTK  169 (170)
Q Consensus       146 ~~~~l~~L~~L~L~~N~l~g~iP~  169 (170)
                      .|.++++|+.++++.|.++ .|+.
T Consensus       292 aF~~c~~L~~l~l~~n~i~-~I~~  314 (329)
T 3sb4_A          292 AFMGCDNLRYVLATGDKIT-TLGD  314 (329)
T ss_dssp             TTTTCTTEEEEEECSSCCC-EECT
T ss_pred             hhhCCccCCEEEeCCCccC-ccch
Confidence            8999999999999988887 5553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.31  E-value=3.5e-08  Score=75.43  Aligned_cols=72  Identities=19%  Similarity=0.216  Sum_probs=52.2

Q ss_pred             CCCCcCCCCCCCCE--EeccCCcc---CccccCccccccCCCCCCCEEECCCCCCCC--CChhhccCCCCCCEEeCCCCc
Q 038455           90 MNMSLFHPFEELQS--LDLSENWF---TGIYENRAYDSFGSLKQLKMLNLGFNYVND--SILPYLNTLTSLTTLNLSYNK  162 (170)
Q Consensus        90 ~~~~~~~~l~~L~~--L~ls~N~l---~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g--~~p~~~~~l~~L~~L~L~~N~  162 (170)
                      ++.+.|...+.|..  ++++.|..   ...++.    ...++++|+.|+|++|+|++  .+|..+..+++|+.|+|++|+
T Consensus       132 LdLs~l~~dp~L~~~~l~l~~N~~~~~~~~l~i----~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~  207 (267)
T 3rw6_A          132 LDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRI----IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE  207 (267)
T ss_dssp             EECTTGGGCHHHHHTTCCCCTTSHHHHHHHHHH----HHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred             cCHHHcCCCcchhhcCccccCCHHHHHHHHHHH----HHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc
Confidence            33444555555665  67777743   222222    23568899999999999997  456778899999999999999


Q ss_pred             Ccc
Q 038455          163 IEG  165 (170)
Q Consensus       163 l~g  165 (170)
                      |++
T Consensus       208 i~~  210 (267)
T 3rw6_A          208 LKS  210 (267)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            985

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.25  E-value=2e-07  Score=73.51  Aligned_cols=89  Identities=21%  Similarity=0.259  Sum_probs=70.2

Q ss_pred             CCCeEEeecCCcCccceecCCCCCCCCC----CcCCCCC-CCCEEeccCCccCccccCccccccCCC-----CCCCEEEC
Q 038455           65 TRRVMQLSLNYTRRLKYYDRTSASFMNM----SLFHPFE-ELQSLDLSENWFTGIYENRAYDSFGSL-----KQLKMLNL  134 (170)
Q Consensus        65 ~~~v~~L~L~~~~~l~~~~~~~~~~~~~----~~~~~l~-~L~~L~ls~N~l~~~~p~~~~~~~~~l-----~~L~~L~L  134 (170)
                      ...++.|+|+++. ++..        ..    ..|..++ +|++|++++|.+++..+.    .+..+     ++|+.|+|
T Consensus        21 ~~~L~~L~Ls~n~-l~~~--------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~----~l~~~l~~~~~~L~~L~L   87 (362)
T 3goz_A           21 PHGVTSLDLSLNN-LYSI--------STVELIQAFANTPASVTSLNLSGNSLGFKNSD----ELVQILAAIPANVTSLNL   87 (362)
T ss_dssp             CTTCCEEECTTSC-GGGS--------CHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH----HHHHHHHTSCTTCCEEEC
T ss_pred             CCCceEEEccCCC-CChH--------HHHHHHHHHHhCCCceeEEECcCCCCCHHHHH----HHHHHHhccCCCccEEEC
Confidence            3458999999988 5433        23    4567788 899999999999886665    55554     99999999


Q ss_pred             CCCCCCCCChhhc----cCC-CCCCEEeCCCCcCccc
Q 038455          135 GFNYVNDSILPYL----NTL-TSLTTLNLSYNKIEGS  166 (170)
Q Consensus       135 s~N~l~g~~p~~~----~~l-~~L~~L~L~~N~l~g~  166 (170)
                      ++|.+++..+..+    ..+ ++|+.|+|++|++++.
T Consensus        88 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  124 (362)
T 3goz_A           88 SGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK  124 (362)
T ss_dssp             CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred             cCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence            9999998777644    444 8999999999999854

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.19  E-value=1e-07  Score=76.98  Aligned_cols=67  Identities=25%  Similarity=0.170  Sum_probs=53.3

Q ss_pred             CCCCCCCCEEeccCCccCccccCccccccCC-----CCCCCEEECCCCCCCC----CChhhccCCCCCCEEeCCCCcCcc
Q 038455           95 FHPFEELQSLDLSENWFTGIYENRAYDSFGS-----LKQLKMLNLGFNYVND----SILPYLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus        95 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~-----l~~L~~L~Ls~N~l~g----~~p~~~~~l~~L~~L~L~~N~l~g  165 (170)
                      +..+++|++|++++|.+++..+.    .+..     .++|+.|++++|.+++    .+|..+..+++|+.|++++|++++
T Consensus       337 l~~~~~L~~L~Ls~n~i~~~~~~----~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          337 LAQNRFLLELQISNNRLEDAGVR----ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHHCSSCCEEECCSSBCHHHHHH----HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             HhhCCCccEEEccCCccccccHH----HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            44568899999999988765443    3332     6789999999999986    678888889999999999999874

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.02  E-value=4.4e-07  Score=73.25  Aligned_cols=40  Identities=20%  Similarity=0.111  Sum_probs=17.5

Q ss_pred             CCCCCCEEECCCCCCCCCChhhccC-----CCCCCEEeCCCCcCc
Q 038455          125 SLKQLKMLNLGFNYVNDSILPYLNT-----LTSLTTLNLSYNKIE  164 (170)
Q Consensus       125 ~l~~L~~L~Ls~N~l~g~~p~~~~~-----l~~L~~L~L~~N~l~  164 (170)
                      .+++|+.|++++|.+.+..+..+..     .++|+.|++++|.++
T Consensus       339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence            3444555555555444332222221     344555555555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.00  E-value=1.3e-06  Score=69.53  Aligned_cols=65  Identities=20%  Similarity=0.228  Sum_probs=45.2

Q ss_pred             CCCCCCCEEeccCCccCccc----cCccccccCCCCCCCEEECCCCCCCCC----ChhhccCCCCCCEEeCCCCcCc
Q 038455           96 HPFEELQSLDLSENWFTGIY----ENRAYDSFGSLKQLKMLNLGFNYVNDS----ILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        96 ~~l~~L~~L~ls~N~l~~~~----p~~~~~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      ..+++|++|+|++|.+...-    ..    .+...++|+.|+|++|.|+..    ++..+...++|++|+|++|.|+
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~----~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAA----QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHH----HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHH----HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            45677888888888876421    22    456667888888888888642    3344556678888888888876

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.81  E-value=3.8e-06  Score=66.84  Aligned_cols=64  Identities=22%  Similarity=0.253  Sum_probs=47.3

Q ss_pred             CCCCCCEEeccCCccCcc----ccCccccccCCCCCCCEEECCCCCCCCC----ChhhccCCCCCCEEeCCCCcCc
Q 038455           97 PFEELQSLDLSENWFTGI----YENRAYDSFGSLKQLKMLNLGFNYVNDS----ILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        97 ~l~~L~~L~ls~N~l~~~----~p~~~~~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      ..+.|+.|+|++|.++..    ++.    .+...++|++|+|++|.|...    ++..+...++|+.|+|++|.|+
T Consensus       153 ~~~~L~~L~Ls~n~l~~~~~~~l~~----~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          153 DQCQITTLRLSNNPLTAAGVAVLME----GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             TTCCCCEEECCSSCCHHHHHHHHHH----HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             cCCccceeeCCCCCCChHHHHHHHH----HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence            456788888888887642    222    346678899999999988642    3556777788999999999886

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.64  E-value=7.5e-06  Score=58.74  Aligned_cols=63  Identities=19%  Similarity=0.278  Sum_probs=35.0

Q ss_pred             CCCCCEEeccCCccCcc----ccCccccccCCCCCCCEEEC--CCCCCCCC----ChhhccCCCCCCEEeCCCCcCc
Q 038455           98 FEELQSLDLSENWFTGI----YENRAYDSFGSLKQLKMLNL--GFNYVNDS----ILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        98 l~~L~~L~ls~N~l~~~----~p~~~~~~~~~l~~L~~L~L--s~N~l~g~----~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      .+.|++|+|++|.|...    +..    .+...+.|+.|+|  +.|.|...    +...+...+.|+.|+|++|.+.
T Consensus        92 n~~L~~L~L~~N~i~~~g~~~l~~----~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           92 NNTLKSLNVESNFISGSGILALVE----ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHH----GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CCCcCEEECcCCcCCHHHHHHHHH----HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            35566666666666532    112    3455566666666  55666532    2233444566666666666653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.62  E-value=0.00017  Score=48.87  Aligned_cols=37  Identities=24%  Similarity=0.266  Sum_probs=26.0

Q ss_pred             CCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCC
Q 038455          100 ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVN  140 (170)
Q Consensus       100 ~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~  140 (170)
                      +|+.|+|++|+|+...+.    .|..+++|+.|+|++|.+.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~----~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPG----LLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCTT----TGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccChh----hhhhccccCEEEecCCCee
Confidence            477777777777775444    6667777777777777663

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.55  E-value=1.8e-05  Score=56.61  Aligned_cols=84  Identities=12%  Similarity=0.101  Sum_probs=61.5

Q ss_pred             CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCc-cCccccCccccccCCC----CCCCEEECCCCC-C
Q 038455           66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENW-FTGIYENRAYDSFGSL----KQLKMLNLGFNY-V  139 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~-l~~~~p~~~~~~~~~l----~~L~~L~Ls~N~-l  139 (170)
                      ..+++||++++. ++..        ....+..+++|+.|+|+++. ++..-    ...+..+    ++|+.|+|+++. +
T Consensus        61 ~~L~~LDLs~~~-Itd~--------GL~~L~~~~~L~~L~L~~C~~ItD~g----L~~L~~~~~~~~~L~~L~Ls~C~~I  127 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSI--------GFDHMEGLQYVEKIRLCKCHYIEDGC----LERLSQLENLQKSMLEMEIISCGNV  127 (176)
T ss_dssp             CCEEEEEEESCC-CCGG--------GGGGGTTCSCCCEEEEESCTTCCHHH----HHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred             ceEeEEeCcCCC-ccHH--------HHHHhcCCCCCCEEEeCCCCccCHHH----HHHHHhcccccCCCCEEEcCCCCcC
Confidence            469999999887 4322        12345789999999999985 66432    2255554    479999999975 7


Q ss_pred             CCCChhhccCCCCCCEEeCCCCc
Q 038455          140 NDSILPYLNTLTSLTTLNLSYNK  162 (170)
Q Consensus       140 ~g~~p~~~~~l~~L~~L~L~~N~  162 (170)
                      +..--..+..+++|+.|+|++..
T Consensus       128 TD~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          128 TDKGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             CHHHHHHGGGCTTCCEEEEESCT
T ss_pred             CHHHHHHHhcCCCCCEEECCCCC
Confidence            75444567889999999998874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.53  E-value=1.6e-05  Score=65.94  Aligned_cols=65  Identities=12%  Similarity=-0.054  Sum_probs=48.3

Q ss_pred             CCCCCCEEeccCCccCcc-ccCccccccCCCCCCCEEECCCCCCCCC-ChhhccCCCCCCEEeCCCCcCcc
Q 038455           97 PFEELQSLDLSENWFTGI-YENRAYDSFGSLKQLKMLNLGFNYVNDS-ILPYLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus        97 ~l~~L~~L~ls~N~l~~~-~p~~~~~~~~~l~~L~~L~Ls~N~l~g~-~p~~~~~l~~L~~L~L~~N~l~g  165 (170)
                      .+++|++|++++|.+++. ++.    .+..+++|+.|++++|.+++. ++..+..+++|+.|+|++|+++.
T Consensus       461 ~~~~L~~L~L~~n~l~~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          461 YSPNVRWMLLGYVGESDEGLME----FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             SCTTCCEEEECSCCSSHHHHHH----HHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             hCccceEeeccCCCCCHHHHHH----HHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence            367788888888887652 343    457788899999998887644 34455678889999999988874

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.52  E-value=8.9e-06  Score=58.37  Aligned_cols=95  Identities=14%  Similarity=0.133  Sum_probs=65.4

Q ss_pred             CCCeEEeecCCc-CccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCC-
Q 038455           65 TRRVMQLSLNYT-RRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDS-  142 (170)
Q Consensus        65 ~~~v~~L~L~~~-~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~-  142 (170)
                      ...++.|+|+++ . +....   ...+ ...+...+.|++|+|++|.+...-...-...+...+.|++|+|++|.|... 
T Consensus        35 ~~~L~~L~L~~n~~-i~~~g---~~~l-~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           35 DPDLEEVNLNNIMN-IPVPT---LKAC-AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             CTTCCEEECTTCTT-CCHHH---HHHH-HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             CCCCCEEEecCCCC-CCHHH---HHHH-HHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            457899999988 5 32110   0000 223456788999999999997532110000455668899999999999753 


Q ss_pred             ---ChhhccCCCCCCEEeC--CCCcCc
Q 038455          143 ---ILPYLNTLTSLTTLNL--SYNKIE  164 (170)
Q Consensus       143 ---~p~~~~~l~~L~~L~L--~~N~l~  164 (170)
                         +...+...+.|++|+|  ++|.|.
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCC
Confidence               4566788899999999  889886

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.49  E-value=0.00017  Score=55.80  Aligned_cols=67  Identities=12%  Similarity=0.047  Sum_probs=57.3

Q ss_pred             CCCCCCCcCCCCCCCC-EEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeC
Q 038455           87 ASFMNMSLFHPFEELQ-SLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNL  158 (170)
Q Consensus        87 ~~~~~~~~~~~l~~L~-~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  158 (170)
                      +..+....|..+.+|+ .+++.. .++.+.+.    .|.++++|+.++++.|.+....+..|.++++|+.++.
T Consensus       261 i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~----aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          261 LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFG----AFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CCEECTTTTTTCTTCCEEEEECT-TCCEECTT----TTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             cceehHHHhhCChhccEEEEEcc-cceEEchh----hhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            3456678899999999 999998 77775566    8999999999999999999666678999999999864

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.25  E-value=7.2e-05  Score=62.05  Aligned_cols=65  Identities=14%  Similarity=0.138  Sum_probs=44.6

Q ss_pred             CCCCCCEEeccCCccCcc----ccCccccccCCCCCCCEEECCCCCCCC----CChhhccCCCCCCEEeCCCCcCcc
Q 038455           97 PFEELQSLDLSENWFTGI----YENRAYDSFGSLKQLKMLNLGFNYVND----SILPYLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus        97 ~l~~L~~L~ls~N~l~~~----~p~~~~~~~~~l~~L~~L~Ls~N~l~g----~~p~~~~~l~~L~~L~L~~N~l~g  165 (170)
                      .+++|++|+|++|.+++.    ++.    .+..+++|+.|+++.|.+.+    .++..+..+++|+.|++++|.+.+
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~----~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~  234 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHE----LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE  234 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHH----HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred             hCCCCCEEECccccccCcchhHHHH----HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence            567888888888877554    222    34567778888888888763    234445677888888888877653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.11  E-value=6.9e-05  Score=59.44  Aligned_cols=67  Identities=18%  Similarity=0.320  Sum_probs=41.8

Q ss_pred             CCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCC----ChhhccCCCCCCEEeCCCCcCc
Q 038455           97 PFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDS----ILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        97 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      .+++|+.|+|.+|.+....+. .+.....+++|+.|+|+.|.+.+.    ++..+..+++|+.|+|+.|.++
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~-~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVE-MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHH-HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCCcCEEeCCCCCCchHHHH-HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            466777777777776543221 001123567788888888877653    3333455678888888888765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.09  E-value=0.0014  Score=52.42  Aligned_cols=68  Identities=9%  Similarity=0.138  Sum_probs=41.5

Q ss_pred             CCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455           90 MNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        90 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      +....|..+++|+.+++. +.++.+-..    .|.++++|+.+.|..| +...-...|.++ +|+.+++.+|.+.
T Consensus       291 I~~~aF~~c~~L~~l~l~-~~i~~I~~~----aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          291 IHPYCLEGCPKLARFEIP-ESIRILGQG----LLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             ECTTTTTTCTTCCEECCC-TTCCEECTT----TTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             ECHHHhhCCccCCeEEeC-CceEEEhhh----hhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence            444556666666666666 335443333    6666777777777544 443344567777 7777777777654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.93  E-value=0.00014  Score=60.20  Aligned_cols=64  Identities=20%  Similarity=0.178  Sum_probs=26.4

Q ss_pred             CCCCCCEEeccCCccCccccCcccc-ccCCCCCCCEEECCCCC--CCCC-ChhhccCCCCCCEEeCCCC
Q 038455           97 PFEELQSLDLSENWFTGIYENRAYD-SFGSLKQLKMLNLGFNY--VNDS-ILPYLNTLTSLTTLNLSYN  161 (170)
Q Consensus        97 ~l~~L~~L~ls~N~l~~~~p~~~~~-~~~~l~~L~~L~Ls~N~--l~g~-~p~~~~~l~~L~~L~L~~N  161 (170)
                      .+++|++|++++|.+++..+. .+. ....+++|+.|++++|.  +... ++..+..+++|+.|++++|
T Consensus       154 ~~~~L~~L~L~~~~i~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          154 TCRNLKELDLRESDVDDVSGH-WLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             HCTTCCEEECTTCEEECCCGG-GGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             hCCCCCEEeCcCCccCCcchH-HHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            345555555555554432221 000 11234455555555554  1100 1111233455555555555

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.85  E-value=0.00013  Score=60.48  Aligned_cols=63  Identities=13%  Similarity=0.104  Sum_probs=36.6

Q ss_pred             CCCCCEEeccCCccCccccCcccccc-CCCCCCCEEECCCCCCCCCChh-hccCCCCCCEEeCCCCcCc
Q 038455           98 FEELQSLDLSENWFTGIYENRAYDSF-GSLKQLKMLNLGFNYVNDSILP-YLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        98 l~~L~~L~ls~N~l~~~~p~~~~~~~-~~l~~L~~L~Ls~N~l~g~~p~-~~~~l~~L~~L~L~~N~l~  164 (170)
                      +++|+.|++++|.+++....    .+ ..+++|+.|++++|.+++..+. .+..+++|+.|++++|+++
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~----~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMH----HVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHH----HHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             chhccEeeccCCCCcHHHHH----HHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            55666666666666543332    22 4466677777777776433332 3344667777777777653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.49  E-value=0.0029  Score=42.65  Aligned_cols=55  Identities=22%  Similarity=0.137  Sum_probs=31.6

Q ss_pred             EEeccCCccC-ccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcC
Q 038455          103 SLDLSENWFT-GIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKI  163 (170)
Q Consensus       103 ~L~ls~N~l~-~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l  163 (170)
                      .++.+++.++ ..+|.    .+  .++|+.|+|++|+|+...+..|..+++|+.|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~----~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPT----AF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCS----CC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCC----CC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4555555554 12443    22  23466677777777644445566666677777776665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.26  E-value=0.006  Score=48.79  Aligned_cols=68  Identities=15%  Similarity=0.043  Sum_probs=45.8

Q ss_pred             CCCCCcCCCCCCCCEEeccCCccC-----ccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCC
Q 038455           89 FMNMSLFHPFEELQSLDLSENWFT-----GIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYN  161 (170)
Q Consensus        89 ~~~~~~~~~l~~L~~L~ls~N~l~-----~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N  161 (170)
                      .+....|..+++|+.+++.+|.+.     ...+.    .|..+++|+.+.+.+ .+...-...|.++++|+.+.|..|
T Consensus       261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~----aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY----CLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTT----TTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred             EEChhHhhCCCCCCEEEeCCccccCCcccEECHH----HhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence            444566777788888888777654     22333    677788888888873 465344457778888888887554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.09  E-value=0.002  Score=45.88  Aligned_cols=61  Identities=18%  Similarity=0.344  Sum_probs=46.7

Q ss_pred             CCCEEeccCCccCccccCccccccCCCCCCCEEECCCCC-CCCCChhhccCC----CCCCEEeCCCCc-Cc
Q 038455          100 ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNY-VNDSILPYLNTL----TSLTTLNLSYNK-IE  164 (170)
Q Consensus       100 ~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~-l~g~~p~~~~~l----~~L~~L~L~~N~-l~  164 (170)
                      +|+.||++++.++..    ++..+..+++|+.|+|+++. ++..--..+..+    ++|+.|+|+++. ++
T Consensus        62 ~L~~LDLs~~~Itd~----GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           62 KIQAIDATDSCIMSI----GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             CEEEEEEESCCCCGG----GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             eEeEEeCcCCCccHH----HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence            699999999987653    33378899999999999985 665434456664    479999999874 54

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.65  E-value=0.033  Score=43.99  Aligned_cols=68  Identities=22%  Similarity=0.311  Sum_probs=47.4

Q ss_pred             CCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCc
Q 038455           89 FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNK  162 (170)
Q Consensus        89 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~  162 (170)
                      .+....|..+.+|+.+++..+ ++.+-..    .|.++++|+.+.+..+ +...-...|.++++|+.+++.+|.
T Consensus       301 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~----aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          301 ELPESVFAGCISLKSIDIPEG-ITQILDD----AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             EECTTTTTTCTTCCEEECCTT-CCEECTT----TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             ccCceeecCCCCcCEEEeCCc-ccEehHh----HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            445566777888888888654 4443334    7888888888888654 553444578888888888887764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.54  E-value=0.023  Score=44.44  Aligned_cols=68  Identities=10%  Similarity=0.088  Sum_probs=48.1

Q ss_pred             CCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCC
Q 038455           89 FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYN  161 (170)
Q Consensus        89 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N  161 (170)
                      .+....|..+++|+.+.+..+.++.+-..    .|.++.+|+.+.|..+ +...-...|.++.+|+.+.+..+
T Consensus       276 ~i~~~aF~~c~~L~~i~l~~~~i~~I~~~----aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          276 TVPYLLCSGCSNLTKVVMDNSAIETLEPR----VFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             EECTTTTTTCTTCCEEEECCTTCCEECTT----TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             eccccccccccccccccccccccceehhh----hhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            34455677888888888888777765445    7888888888888754 44233456888888888877543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.52  E-value=0.016  Score=45.81  Aligned_cols=67  Identities=19%  Similarity=0.234  Sum_probs=40.7

Q ss_pred             CCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCC
Q 038455           89 FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYN  161 (170)
Q Consensus        89 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N  161 (170)
                      .+....|..+++|+.+++..+ ++.+-..    .|.++++|+.+.+..+ +...-...|.++.+|+.+.+..+
T Consensus       310 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~----aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          310 FIGEEAFESCTSLVSIDLPYL-VEEIGKR----SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             EECTTTTTTCTTCCEECCCTT-CCEECTT----TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             eechhhhcCCCCCCEEEeCCc-ccEEhHH----hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            344455667777777777543 4443333    6777777777777655 44333446777777777776543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.12  E-value=0.011  Score=42.93  Aligned_cols=92  Identities=10%  Similarity=0.148  Sum_probs=57.0

Q ss_pred             CCCeEEeecCCc-CccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCC-
Q 038455           65 TRRVMQLSLNYT-RRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDS-  142 (170)
Q Consensus        65 ~~~v~~L~L~~~-~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~-  142 (170)
                      ...+++|+|+++ . +...   +...+ ...+..=+.|+.|+|++|.|...--..-...+..-+.|+.|+|+.|.|... 
T Consensus        40 n~~L~~L~L~~nn~-igd~---ga~~l-a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           40 DTDLKEVNINNMKR-VSKE---RIRSL-IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             CSSCCEEECTTCCS-SCHH---HHHHH-HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             CCCccEEECCCCCC-CCHH---HHHHH-HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence            456788888765 3 2110   00000 123445568999999999997432220000344557899999999999743 


Q ss_pred             ---ChhhccCCCCCCEEeCCCC
Q 038455          143 ---ILPYLNTLTSLTTLNLSYN  161 (170)
Q Consensus       143 ---~p~~~~~l~~L~~L~L~~N  161 (170)
                         +-+.+..-+.|+.|+|++|
T Consensus       115 a~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          115 LARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHHhhCCceeEEECCCC
Confidence               3345666678999999865

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=94.43  E-value=0.017  Score=45.58  Aligned_cols=69  Identities=16%  Similarity=0.188  Sum_probs=41.5

Q ss_pred             CCCCCCEEeccC--CccCccccCcccc-cc--CCCCCCCEEECCCCCCCCCChhhc---cCCCCCCEEeCCCCcCcc
Q 038455           97 PFEELQSLDLSE--NWFTGIYENRAYD-SF--GSLKQLKMLNLGFNYVNDSILPYL---NTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus        97 ~l~~L~~L~ls~--N~l~~~~p~~~~~-~~--~~l~~L~~L~Ls~N~l~g~~p~~~---~~l~~L~~L~L~~N~l~g  165 (170)
                      .+++|+.|+|+.  |...+.....+.+ .+  ..+++|+.|+|.+|.+....+..+   ..+++|++|+|+.|.++.
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            577888888753  2221110000000 12  247889999998888864444333   257889999999998864

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.15  E-value=0.029  Score=40.57  Aligned_cols=94  Identities=14%  Similarity=0.200  Sum_probs=55.5

Q ss_pred             CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCC---CCC
Q 038455           65 TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNY---VND  141 (170)
Q Consensus        65 ~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~---l~g  141 (170)
                      ...++.|+|+++. +....-.   .+ ...+..=+.|+.|+|+.|.|...--..-...+..-+.|+.|+|++|.   +..
T Consensus        69 N~~L~~L~L~~n~-igd~ga~---al-A~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~  143 (197)
T 1pgv_A           69 SKHIEKFSLANTA-ISDSEAR---GL-IELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN  143 (197)
T ss_dssp             CSCCCEEECTTSC-CBHHHHT---TH-HHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred             CCCcCEEEccCCC-CChHHHH---HH-HHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCH
Confidence            4568888888887 3211000   00 11222335799999999998743211000145556779999998653   332


Q ss_pred             C----ChhhccCCCCCCEEeCCCCcC
Q 038455          142 S----ILPYLNTLTSLTTLNLSYNKI  163 (170)
Q Consensus       142 ~----~p~~~~~l~~L~~L~L~~N~l  163 (170)
                      .    +.+.+..-+.|+.|+++.|.+
T Consensus       144 ~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          144 QVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            1    334556667899999987764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=93.82  E-value=0.13  Score=40.56  Aligned_cols=64  Identities=22%  Similarity=0.241  Sum_probs=47.2

Q ss_pred             CCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCC
Q 038455           92 MSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYN  161 (170)
Q Consensus        92 ~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N  161 (170)
                      ...|..+.+|+.+.+..+ ++.+-..    .|.++++|+.+++..+ +...-...|.++.+|+.+.+..|
T Consensus       290 ~~~F~~~~~L~~i~l~~~-i~~I~~~----aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          290 EKTFYGCSSLTEVKLLDS-VKFIGEE----AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             TTTTTTCTTCCEEEECTT-CCEECTT----TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             cccccccccccccccccc-cceechh----hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            345667788888888654 5543344    7888999999999754 55344567999999999999766

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=93.73  E-value=0.16  Score=39.57  Aligned_cols=67  Identities=9%  Similarity=0.074  Sum_probs=46.9

Q ss_pred             CCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCC
Q 038455           90 MNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYN  161 (170)
Q Consensus        90 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N  161 (170)
                      +....|..+..|+.+.+..+ +......    .|..+++|+.+.+..+.+...-...|.++.+|+.+.|..+
T Consensus       254 I~~~aF~~~~~l~~i~l~~~-i~~i~~~----aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          254 IGSFLLQNCTALKTLNFYAK-VKTVPYL----LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             ECTTTTTTCTTCCEEEECCC-CSEECTT----TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred             eCccccceeehhcccccccc-ceecccc----ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence            33445666667777776543 3332233    6888899999999888887444567899999999998654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=92.04  E-value=0.35  Score=37.97  Aligned_cols=64  Identities=16%  Similarity=0.228  Sum_probs=41.2

Q ss_pred             CCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCC
Q 038455           92 MSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYN  161 (170)
Q Consensus        92 ~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N  161 (170)
                      ...|..+..|+.+.+. +.++.....    .|.++.+|+.+.+..+ ++..-...|.++.+|+.+.+..+
T Consensus       281 ~~aF~~c~~L~~i~l~-~~i~~I~~~----aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s  344 (394)
T 4gt6_A          281 TGAFMNCPALQDIEFS-SRITELPES----VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS  344 (394)
T ss_dssp             TTTTTTCTTCCEEECC-TTCCEECTT----TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT
T ss_pred             CcccccccccccccCC-CcccccCce----eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc
Confidence            4455666667766664 334443333    6778888888888754 44233457888888888888544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	170
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 3e-08
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 8/115 (6%)

Query: 47  GMPSDCCDAWEGVMCNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDL 106
            +           +     +      ++  + L Y      +  ++S      +LQ L  
Sbjct: 277 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 336

Query: 107 SENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYN 161
           + N  + +       S  +L  +  L+ G N ++D  L  L  LT +T L L+  
Sbjct: 337 ANNKVSDV------SSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 1e-07
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 8/77 (10%)

Query: 89  FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLN 148
             ++S     + L  L L  N  + I          SL +L+ L    N V  S +  L 
Sbjct: 297 LEDISPISNLKNLTYLTLYFNNISDI------SPVSSLTKLQRLFFANNKV--SDVSSLA 348

Query: 149 TLTSLTTLNLSYNKIEG 165
            LT++  L+  +N+I  
Sbjct: 349 NLTNINWLSAGHNQISD 365

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 2/76 (2%)

Query: 90  MNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNT 149
           +  +       L  L    N      +        +LK L  L L FN  N S +  +++
Sbjct: 270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN--NISDISPVSS 327

Query: 150 LTSLTTLNLSYNKIEG 165
           LT L  L  + NK+  
Sbjct: 328 LTKLQRLFFANNKVSD 343

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.8 bits (112), Expect = 1e-07
 Identities = 33/154 (21%), Positives = 51/154 (33%), Gaps = 47/154 (30%)

Query: 10  CLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCD-AWEGVMCNATTRRV 68
           C   ++ ALL IK           +   L SW+       +DCC+  W GV+C+  T+  
Sbjct: 3   CNPQDKQALLQIKKDLG-------NPTTLSSWLPT-----TDCCNRTWLGVLCDTDTQTY 50

Query: 69  MQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQ 128
                                           + +LDLS       Y      S  +L  
Sbjct: 51  -------------------------------RVNNLDLSGLNLPKPYPIP--SSLANLPY 77

Query: 129 LKMLNLGFNY-VNDSILPYLNTLTSLTTLNLSYN 161
           L  L +G    +   I P +  LT L  L +++ 
Sbjct: 78  LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 41.3 bits (95), Expect = 2e-05
 Identities = 22/111 (19%), Positives = 34/111 (30%), Gaps = 5/111 (4%)

Query: 52  CCDAWEGVMCNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWF 111
              A+  +  N        L  +     K +   ++   ++      + L  LDL  N  
Sbjct: 197 LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI 256

Query: 112 TGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNK 162
            G            LK L  LN+ FN +   I P    L        + NK
Sbjct: 257 YGTLP----QGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNK 302

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 1e-06
 Identities = 16/123 (13%), Positives = 33/123 (26%), Gaps = 5/123 (4%)

Query: 48  MPSDCCDAWEGVMCNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLS 107
               C          ++     +  L         +      +   L  P   L+ L L+
Sbjct: 318 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 377

Query: 108 ENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYL-----NTLTSLTTLNLSYNK 162
           +   +    +    +  +   L+ L+L  N + D+ +  L          L  L L    
Sbjct: 378 DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 437

Query: 163 IEG 165
              
Sbjct: 438 WSE 440

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 1e-06
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 7/71 (9%)

Query: 100 ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND----SILPYLNTLTSLTT 155
           ++QSLD+     +   + R  +    L+Q +++ L    + +     I   L    +L  
Sbjct: 3   DIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 156 LNLSYNKIEGS 166
           LNL  N++   
Sbjct: 60  LNLRSNELGDV 70

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 6e-04
 Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 5/75 (6%)

Query: 92  MSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYL---- 147
             L    ++ Q + L +   T         +      L  LNL  N + D  +  +    
Sbjct: 20  AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 79

Query: 148 -NTLTSLTTLNLSYN 161
                 +  L+L   
Sbjct: 80  QTPSCKIQKLSLQNC 94

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.3 bits (103), Expect = 2e-06
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160
              LDL  N  T I +      F +LK L  L L  N ++         L  L  L LS 
Sbjct: 33  TALLDLQNNKITEIKDG----DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 161 NKIEG 165
           N+++ 
Sbjct: 89  NQLKE 93

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 1e-04
 Identities = 19/126 (15%), Positives = 36/126 (28%), Gaps = 12/126 (9%)

Query: 40  SWVGEDDGMPSDCCDAWEGVMCNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFE 99
           S    +                          S         Y   ++S    SL     
Sbjct: 225 SLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPP 284

Query: 100 ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLS 159
            L+ L++S N    +             +L+ L   FN++ +  +P      +L  L++ 
Sbjct: 285 SLEELNVSNNKLIEL--------PALPPRLERLIASFNHLAE--VP--ELPQNLKQLHVE 332

Query: 160 YNKIEG 165
           YN +  
Sbjct: 333 YNPLRE 338

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 1e-04
 Identities = 18/108 (16%), Positives = 39/108 (36%), Gaps = 8/108 (7%)

Query: 52  CCDAWEGVMCNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWF 111
              +   V+     +      L     L+Y    +A   +++      +L +L   +N  
Sbjct: 126 AGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKI 185

Query: 112 TGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLS 159
           + I          SL  L  ++L  N ++D  +  L   ++L  + L+
Sbjct: 186 SDI------SPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 34.6 bits (78), Expect = 0.003
 Identities = 9/97 (9%), Positives = 23/97 (23%), Gaps = 6/97 (6%)

Query: 38  LPSWVGEDDGMPSDCCDAWEGVMCNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHP 97
           L   + +   +           +     +      L    +L           ++S    
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLAS 193

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNL 134
              L  + L  N  + +          +   L ++ L
Sbjct: 194 LPNLIEVHLKNNQISDV------SPLANTSNLFIVTL 224

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.2 bits (84), Expect = 5e-04
 Identities = 15/129 (11%), Positives = 33/129 (25%), Gaps = 5/129 (3%)

Query: 41  WVGEDDGMPSDCCDAWEGVMCNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEE 100
            +     + +         +         +L +   +   +    S++        P   
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 246

Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYL-----NTLTSLTT 155
              L+       G        S      L+ L L +N +    +  L       +  L  
Sbjct: 247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306

Query: 156 LNLSYNKIE 164
           L L+ N+  
Sbjct: 307 LELNGNRFS 315

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 5e-04
 Identities = 16/122 (13%), Positives = 37/122 (30%), Gaps = 2/122 (1%)

Query: 38  LPSWVGEDDGMPSDCCDAWEGVMCNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHP 97
           L +              +    +    +  +    ++    L +  +  + ++  +    
Sbjct: 89  LKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD 148

Query: 98  FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLN 157
              L  L   +       +         L +L+ L L  N+++D  L  L  L +L  L 
Sbjct: 149 ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLE 206

Query: 158 LS 159
           L 
Sbjct: 207 LF 208

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.002
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 84  RTSASFMNMSLFHPFE--ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND 141
           R   SFM+  L   F    +Q +DLS +       +  +       +L+ L+L    ++D
Sbjct: 29  RCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV---STLHGILSQCSKLQNLSLEGLRLSD 85

Query: 142 SILPYLNTLTSLTTLN 157
            I+  L   ++L  LN
Sbjct: 86  PIVNTLAKNSNLVRLN 101

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.5 bits (76), Expect = 0.003
 Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 18/89 (20%)

Query: 95  FHPFEELQSLDLSENWFTGIYEN-----------------RAYDSFGSLKQLKMLNLGFN 137
                 +  LDLS N    +                       D   +L +L+ L L  N
Sbjct: 16  LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNN 75

Query: 138 YVND-SILPYLNTLTSLTTLNLSYNKIEG 165
            +   + +  L +   L  LNL  N +  
Sbjct: 76  RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	170
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.91
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.53
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.36
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.33
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.26
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.26
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.21
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.16
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.12
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.1
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.07
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.06
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.06
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.04
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.9
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.82
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.81
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.79
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.73
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.63
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.6
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.56
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.43
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.41
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.27
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.17
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.13
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.03
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.97
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.41
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.32
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.28
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.28
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.83
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.42
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.28
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.62
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.06

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.91  E-value=6.2e-25  Score=169.39  Aligned_cols=137  Identities=30%  Similarity=0.501  Sum_probs=93.5

Q ss_pred             CCcHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCceEecCC--CCCeEEeecCCcCccceecCC
Q 038455            9 ACLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCD-AWEGVMCNAT--TRRVMQLSLNYTRRLKYYDRT   85 (170)
Q Consensus         9 ~~~~~~~~aL~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~~~c~-~w~gv~c~~~--~~~v~~L~L~~~~~l~~~~~~   85 (170)
                      -|.++|++||++||+.+.++.       .+.+|..     ++|||. .|.||+|+..  ..||++|+|+++. +.+.   
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-------~l~sW~~-----~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~-l~g~---   65 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-------TLSSWLP-----TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN-LPKP---   65 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-------GGTTCCT-----TSCTTTTCSTTEEECCSSSCCCEEEEEEECCC-CSSC---
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-------cCCCCCC-----CCCCCCCcCCCeEEeCCCCcEEEEEEECCCCC-CCCC---
Confidence            489999999999999998775       6899987     579993 2999999863  3489999999987 4432   


Q ss_pred             CCCCCCCCcCCCCCCCCEEeccC-CccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455           86 SASFMNMSLFHPFEELQSLDLSE-NWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        86 ~~~~~~~~~~~~l~~L~~L~ls~-N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                         ...+..+++|++|++|+|++ |++.|.+|.    .++++++|++|+|++|++.+..|..+..+..|+.++++.|.+.
T Consensus        66 ---~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~----~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~  138 (313)
T d1ogqa_          66 ---YPIPSSLANLPYLNFLYIGGINNLVGPIPP----AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS  138 (313)
T ss_dssp             ---EECCGGGGGCTTCSEEEEEEETTEESCCCG----GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             ---CCCChHHhcCcccccccccccccccccccc----ccccccccchhhhccccccccccccccchhhhccccccccccc
Confidence               01234566777777777765 666666666    6666667776666666665554444444444444444444444


Q ss_pred             ccCC
Q 038455          165 GSRT  168 (170)
Q Consensus       165 g~iP  168 (170)
                      +.+|
T Consensus       139 ~~~p  142 (313)
T d1ogqa_         139 GTLP  142 (313)
T ss_dssp             SCCC
T ss_pred             ccCc
Confidence            4443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.53  E-value=1.4e-14  Score=103.84  Aligned_cols=99  Identities=30%  Similarity=0.388  Sum_probs=58.1

Q ss_pred             CCCCCceEecCC---------CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCcccccc
Q 038455           53 CDAWEGVMCNAT---------TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSF  123 (170)
Q Consensus        53 c~~w~gv~c~~~---------~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~  123 (170)
                      |+ |..|.|...         ...++.|+|+++. ++..       +....|..+++|+.|++++|.+....+.    .+
T Consensus         8 C~-~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~-i~~~-------~~~~~f~~l~~L~~L~L~~N~i~~~~~~----~~   74 (192)
T d1w8aa_           8 CE-GTTVDCTGRGLKEIPRDIPLHTTELLLNDNE-LGRI-------SSDGLFGRLPHLVKLELKRNQLTGIEPN----AF   74 (192)
T ss_dssp             EE-TTEEECTTSCCSSCCSCCCTTCSEEECCSCC-CCSB-------CCSCSGGGCTTCCEEECCSSCCCCBCTT----TT
T ss_pred             Ec-CCEEEEeCCCcCccCCCCCCCCCEEEeCCCC-Cccc-------ccccccCCCceEeeeecccccccccccc----cc
Confidence            67 888888641         2357788888887 4321       2334455555666666666665555444    55


Q ss_pred             CCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455          124 GSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus       124 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      ..+++|+.|+|++|+|....|..|.++++|++|+|++|+|+
T Consensus        75 ~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~  115 (192)
T d1w8aa_          75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS  115 (192)
T ss_dssp             TTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred             ccccccceeeeccccccccCHHHHhCCCcccccccCCcccc
Confidence            55555555555555555444445555555555555555555

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.6e-12  Score=89.09  Aligned_cols=96  Identities=21%  Similarity=0.261  Sum_probs=72.9

Q ss_pred             CCceEecCC-----------CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccC
Q 038455           56 WEGVMCNAT-----------TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFG  124 (170)
Q Consensus        56 w~gv~c~~~-----------~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~  124 (170)
                      +.+|+|...           ..++++|++.++..        +..+.+..|..+++|+.|++++|+|+.+.|.    .|.
T Consensus        10 ~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~--------l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~----~f~   77 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQH--------LQHLELRDLRGLGELRNLTIVKSGLRFVAPD----AFH   77 (156)
T ss_dssp             SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSS--------CCEECGGGSCSCCCCSEEECCSSCCCEECTT----GGG
T ss_pred             CCeEEecCCCCccCcccccCccccCeeecCCCcc--------ccccCchhhccccccCcceeeccccCCcccc----ccc
Confidence            788888641           12445555544432        3445667899999999999999999997676    899


Q ss_pred             CCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455          125 SLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus       125 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      .+++|+.|+|++|+|. .+|........|+.|+|++|++.
T Consensus        78 ~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          78 FTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccccccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            9999999999999999 45544434457999999999874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.33  E-value=1.9e-12  Score=92.38  Aligned_cols=87  Identities=31%  Similarity=0.349  Sum_probs=76.0

Q ss_pred             CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh
Q 038455           66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP  145 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~  145 (170)
                      .+++.|+|+++. +        ..+.+..|..+++|++|+|++|+++...|.    .|.++++|++|+|++|+|++..|.
T Consensus        54 ~~L~~L~L~~N~-i--------~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~----~F~~l~~L~~L~L~~N~l~~i~~~  120 (192)
T d1w8aa_          54 PHLVKLELKRNQ-L--------TGIEPNAFEGASHIQELQLGENKIKEISNK----MFLGLHQLKTLNLYDNQISCVMPG  120 (192)
T ss_dssp             TTCCEEECCSSC-C--------CCBCTTTTTTCTTCCEEECCSCCCCEECSS----SSTTCTTCCEEECCSSCCCEECTT
T ss_pred             ceEeeeeccccc-c--------ccccccccccccccceeeeccccccccCHH----HHhCCCcccccccCCccccccCHH
Confidence            467778887777 3        344577899999999999999999997777    899999999999999999987788


Q ss_pred             hccCCCCCCEEeCCCCcCcc
Q 038455          146 YLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus       146 ~~~~l~~L~~L~L~~N~l~g  165 (170)
                      .|..+++|++|+|++|.+..
T Consensus       121 ~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_         121 SFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             SSTTCTTCCEEECTTCCBCC
T ss_pred             HhcCCccccccccccccccc
Confidence            89999999999999999874

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=1e-11  Score=82.87  Aligned_cols=84  Identities=25%  Similarity=0.252  Sum_probs=69.2

Q ss_pred             CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCC-h
Q 038455           66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSI-L  144 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~-p  144 (170)
                      ..++.|+++++. ++.+         +..|..+++|+.|++++|.++. +|     .+..+++|+.|++++|+|.... +
T Consensus        20 ~~L~~L~ls~N~-l~~l---------p~~~~~l~~L~~L~l~~N~i~~-l~-----~~~~l~~L~~L~l~~N~i~~~~~~   83 (124)
T d1dcea3          20 LLVTHLDLSHNR-LRAL---------PPALAALRCLEVLQASDNALEN-VD-----GVANLPRLQELLLCNNRLQQSAAI   83 (124)
T ss_dssp             TTCCEEECCSSC-CCCC---------CGGGGGCTTCCEEECCSSCCCC-CG-----GGTTCSSCCEEECCSSCCCSSSTT
T ss_pred             CCCCEEECCCCc-cCcc---------hhhhhhhhcccccccccccccc-cC-----ccccccccCeEECCCCccCCCCCc
Confidence            468888888887 4333         3468899999999999999987 44     6889999999999999998543 2


Q ss_pred             hhccCCCCCCEEeCCCCcCcc
Q 038455          145 PYLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus       145 ~~~~~l~~L~~L~L~~N~l~g  165 (170)
                      ..+..+++|++|++++|+++.
T Consensus        84 ~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          84 QPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             GGGGGCTTCCEEECTTSGGGG
T ss_pred             hhhcCCCCCCEEECCCCcCCc
Confidence            578899999999999999973

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=1.5e-11  Score=82.06  Aligned_cols=80  Identities=21%  Similarity=0.274  Sum_probs=66.5

Q ss_pred             EeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccC
Q 038455           70 QLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNT  149 (170)
Q Consensus        70 ~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~  149 (170)
                      .|+|+++. ++.+          ..+..+++|++|++++|.++. +|.    .+..+++|+.|++++|+|+. +| .+..
T Consensus         2 ~L~Ls~n~-l~~l----------~~l~~l~~L~~L~ls~N~l~~-lp~----~~~~l~~L~~L~l~~N~i~~-l~-~~~~   63 (124)
T d1dcea3           2 VLHLAHKD-LTVL----------CHLEQLLLVTHLDLSHNRLRA-LPP----ALAALRCLEVLQASDNALEN-VD-GVAN   63 (124)
T ss_dssp             EEECTTSC-CSSC----------CCGGGGTTCCEEECCSSCCCC-CCG----GGGGCTTCCEEECCSSCCCC-CG-GGTT
T ss_pred             EEEcCCCC-CCCC----------cccccCCCCCEEECCCCccCc-chh----hhhhhhcccccccccccccc-cC-cccc
Confidence            46777777 4322          347889999999999999987 676    79999999999999999994 55 5899


Q ss_pred             CCCCCEEeCCCCcCcccCC
Q 038455          150 LTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus       150 l~~L~~L~L~~N~l~g~iP  168 (170)
                      +++|+.|++++|+++ .+|
T Consensus        64 l~~L~~L~l~~N~i~-~~~   81 (124)
T d1dcea3          64 LPRLQELLLCNNRLQ-QSA   81 (124)
T ss_dssp             CSSCCEEECCSSCCC-SSS
T ss_pred             ccccCeEECCCCccC-CCC
Confidence            999999999999998 344

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.21  E-value=9.1e-12  Score=94.70  Aligned_cols=73  Identities=26%  Similarity=0.291  Sum_probs=58.7

Q ss_pred             CCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCCC
Q 038455           92 MSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTK  169 (170)
Q Consensus        92 ~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~  169 (170)
                      +..+..++.|+.+++++|.+.+.+|     .+..+++|+.|+|++|+++|.+|+.|+++++|++|+|++|+|+|.||.
T Consensus       214 ~~~~~~~~~l~~l~~~~~~l~~~~~-----~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         214 SVLFGSDKNTQKIHLAKNSLAFDLG-----KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             GGGCCTTSCCSEEECCSSEECCBGG-----GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ccccccccccccccccccccccccc-----ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence            4456677888888888888887654     577788888888888888888888888888888888888888888875

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=5.8e-11  Score=82.13  Aligned_cols=73  Identities=19%  Similarity=0.187  Sum_probs=64.0

Q ss_pred             CCcCCCCCCCCEEeccCC-ccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCCC
Q 038455           92 MSLFHPFEELQSLDLSEN-WFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTK  169 (170)
Q Consensus        92 ~~~~~~l~~L~~L~ls~N-~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~  169 (170)
                      +..+..+++|++|++++| .++...+.    .|..+++|+.|++++|+|+...|..|..+++|++|+|++|+|+ .+|.
T Consensus        24 p~~l~~l~~l~~L~l~~n~~l~~i~~~----~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~   97 (156)
T d2ifga3          24 LHHLPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSW   97 (156)
T ss_dssp             TTTSCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCS
T ss_pred             cccccCccccCeeecCCCccccccCch----hhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccCh
Confidence            455778899999999876 58876566    7999999999999999999777888999999999999999999 7775

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.1e-10  Score=81.18  Aligned_cols=83  Identities=22%  Similarity=0.193  Sum_probs=63.9

Q ss_pred             CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCCh-
Q 038455           66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSIL-  144 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p-  144 (170)
                      ..++.|+|+++. ++.+          +.|..+++|+.|++++|.++...+.    .+..+++|+.|++++|++.. ++ 
T Consensus        41 ~~L~~L~Ls~N~-i~~l----------~~~~~l~~L~~L~ls~N~i~~l~~~----~~~~l~~L~~L~L~~N~i~~-~~~  104 (162)
T d1a9na_          41 DQFDAIDFSDNE-IRKL----------DGFPLLRRLKTLLVNNNRICRIGEG----LDQALPDLTELILTNNSLVE-LGD  104 (162)
T ss_dssp             TCCSEEECCSSC-CCEE----------CCCCCCSSCCEEECCSSCCCEECSC----HHHHCTTCCEEECCSCCCCC-GGG
T ss_pred             ccCCEEECCCCC-CCcc----------CCcccCcchhhhhcccccccCCCcc----ccccccccccceeccccccc-ccc
Confidence            356777777776 4333          3477888999999999999875554    56678999999999999873 44 


Q ss_pred             -hhccCCCCCCEEeCCCCcCc
Q 038455          145 -PYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus       145 -~~~~~l~~L~~L~L~~N~l~  164 (170)
                       ..+..+++|++|++++|+++
T Consensus       105 l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_         105 LDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             GGGGGGCTTCCEEECCSSGGG
T ss_pred             ccccccccccchhhcCCCccc
Confidence             36788899999999999886

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.4e-10  Score=86.89  Aligned_cols=72  Identities=24%  Similarity=0.201  Sum_probs=51.3

Q ss_pred             CCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455           90 MNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus        90 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g  165 (170)
                      +++..|..+++|+++++++|++++..|.    .|..+++|+.|++++|++.+..|..|+.+++|+.|++++|++.+
T Consensus       168 l~~~~f~~l~~L~~l~l~~N~l~~i~~~----~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         168 VPERAFRGLHSLDRLLLHQNRVAHVHPH----AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cchhhhccccccchhhhhhccccccChh----HhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            3455666777777777777777776666    67777777777777777776666677777777777777777653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=5.2e-10  Score=83.17  Aligned_cols=65  Identities=25%  Similarity=0.185  Sum_probs=30.7

Q ss_pred             cCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcC
Q 038455           94 LFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKI  163 (170)
Q Consensus        94 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l  163 (170)
                      .+..+++|+.|++++|++++..+.    .|..+++|+.|+|++|+|+ .+|+.+..+++|+.|+|++|++
T Consensus       143 ~~~~l~~l~~l~l~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         143 LLTPTPKLEKLSLANNNLTELPAG----LLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             TTTTCTTCCEEECTTSCCSCCCTT----TTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             cccccccchhcccccccccccCcc----ccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCC
Confidence            334444444445544444443333    3444455555555555544 4444444444455555555443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.3e-10  Score=85.79  Aligned_cols=75  Identities=25%  Similarity=0.231  Sum_probs=66.3

Q ss_pred             CCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCccc
Q 038455           88 SFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGS  166 (170)
Q Consensus        88 ~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~  166 (170)
                      ..+++..|..+++|+.|++++|++++..+.    .|..+++|+.+++++|++.+..|..|..+++|++|++++|.+++.
T Consensus       142 ~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~----~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~  216 (284)
T d1ozna_         142 QALPDDTFRDLGNLTHLFLHGNRISSVPER----AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL  216 (284)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             cccChhHhccccchhhcccccCcccccchh----hhccccccchhhhhhccccccChhHhhhhhhcccccccccccccc
Confidence            345566788899999999999999987776    889999999999999999988899999999999999999999854

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.06  E-value=2.7e-10  Score=85.99  Aligned_cols=67  Identities=21%  Similarity=0.232  Sum_probs=34.8

Q ss_pred             CcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455           93 SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        93 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      ..|..++.+++|++++|.+.+..+.    .+..+++|+.|+|++|+|+ .+|..|..+++|++|+|++|+|+
T Consensus       189 ~~~~~~~~l~~L~~s~n~l~~~~~~----~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         189 ASLKGLNNLAKLGLSFNSISAVDNG----SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             GGGTTCTTCCEEECCSSCCCEECTT----TGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             hHhhccccccccccccccccccccc----cccccccceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence            3444555555555555555554443    4455555555555555555 34445555555555555555554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=5.4e-10  Score=83.08  Aligned_cols=91  Identities=23%  Similarity=0.255  Sum_probs=77.2

Q ss_pred             CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh
Q 038455           66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP  145 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~  145 (170)
                      ..++.++++++.         +..+....+..+.+++.|++++|.+....+.    .+..++.|+.+++++|++++..+.
T Consensus       100 ~~L~~L~l~~~~---------~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~----~~~~l~~l~~l~l~~N~l~~~~~~  166 (266)
T d1p9ag_         100 PALTVLDVSFNR---------LTSLPLGALRGLGELQELYLKGNELKTLPPG----LLTPTPKLEKLSLANNNLTELPAG  166 (266)
T ss_dssp             TTCCEEECCSSC---------CCCCCSSTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCSCCCTT
T ss_pred             cccccccccccc---------cceeeccccccccccccccccccccceeccc----cccccccchhcccccccccccCcc
Confidence            356677777666         2334566788899999999999999987666    788899999999999999988888


Q ss_pred             hccCCCCCCEEeCCCCcCcccCCCC
Q 038455          146 YLNTLTSLTTLNLSYNKIEGSRTKQ  170 (170)
Q Consensus       146 ~~~~l~~L~~L~L~~N~l~g~iP~~  170 (170)
                      .|..+++|++|+|++|+|+ .||++
T Consensus       167 ~~~~l~~L~~L~Ls~N~L~-~lp~~  190 (266)
T d1p9ag_         167 LLNGLENLDTLLLQENSLY-TIPKG  190 (266)
T ss_dssp             TTTTCTTCCEEECCSSCCC-CCCTT
T ss_pred             ccccccccceeecccCCCc-ccChh
Confidence            8999999999999999999 88864

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.90  E-value=3.6e-09  Score=79.64  Aligned_cols=96  Identities=22%  Similarity=0.316  Sum_probs=67.9

Q ss_pred             CCCCCceEecCC---------CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCcccccc
Q 038455           53 CDAWEGVMCNAT---------TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSF  123 (170)
Q Consensus        53 c~~w~gv~c~~~---------~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~  123 (170)
                      |. |++|.|...         ...++.|+|+++. +        ..+++..|..+++|++|++++|.+....|.    .|
T Consensus        10 c~-~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~-i--------~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~----~f   75 (305)
T d1xkua_          10 CH-LRVVQCSDLGLEKVPKDLPPDTALLDLQNNK-I--------TEIKDGDFKNLKNLHTLILINNKISKISPG----AF   75 (305)
T ss_dssp             EE-TTEEECTTSCCCSCCCSCCTTCCEEECCSSC-C--------CCBCTTTTTTCTTCCEEECCSSCCCCBCTT----TT
T ss_pred             ec-CCEEEecCCCCCccCCCCCCCCCEEECcCCc-C--------CCcChhHhhccccccccccccccccccchh----hh
Confidence            77 999999641         1345666666665 3        334555678888888888888888876666    78


Q ss_pred             CCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455          124 GSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus       124 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g  165 (170)
                      ..+++|+.|++++|++. .+|..+  ...++.|++..|.+.+
T Consensus        76 ~~l~~L~~L~l~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~  114 (305)
T d1xkua_          76 APLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITK  114 (305)
T ss_dssp             TTCTTCCEEECCSSCCS-BCCSSC--CTTCCEEECCSSCCCB
T ss_pred             hCCCccCEecccCCccC-cCccch--hhhhhhhhccccchhh
Confidence            88888888888888887 455432  3467778888777763

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=3.1e-09  Score=73.58  Aligned_cols=83  Identities=23%  Similarity=0.238  Sum_probs=69.4

Q ss_pred             CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh
Q 038455           66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP  145 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~  145 (170)
                      .++.+|+|+++. ++.+         +..+..+++|+.|++++|.++. ++     .+..+++|+.|++++|++....+.
T Consensus        18 ~~lr~L~L~~n~-I~~i---------~~~~~~l~~L~~L~Ls~N~i~~-l~-----~~~~l~~L~~L~ls~N~i~~l~~~   81 (162)
T d1a9na_          18 VRDRELDLRGYK-IPVI---------ENLGATLDQFDAIDFSDNEIRK-LD-----GFPLLRRLKTLLVNNNRICRIGEG   81 (162)
T ss_dssp             TSCEEEECTTSC-CCSC---------CCGGGGTTCCSEEECCSSCCCE-EC-----CCCCCSSCCEEECCSSCCCEECSC
T ss_pred             CcCcEEECCCCC-CCcc---------CccccccccCCEEECCCCCCCc-cC-----CcccCcchhhhhcccccccCCCcc
Confidence            467899999998 4333         3456788999999999999986 44     688999999999999999965555


Q ss_pred             hccCCCCCCEEeCCCCcCc
Q 038455          146 YLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus       146 ~~~~l~~L~~L~L~~N~l~  164 (170)
                      .+..+++|+.|++++|+++
T Consensus        82 ~~~~l~~L~~L~L~~N~i~  100 (162)
T d1a9na_          82 LDQALPDLTELILTNNSLV  100 (162)
T ss_dssp             HHHHCTTCCEEECCSCCCC
T ss_pred             ccccccccccceecccccc
Confidence            6778999999999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.81  E-value=3.9e-09  Score=81.14  Aligned_cols=59  Identities=27%  Similarity=0.377  Sum_probs=35.4

Q ss_pred             CCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCC
Q 038455           95 FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYN  161 (170)
Q Consensus        95 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N  161 (170)
                      +..+++|++|++++|++++ ++     .+..+++|++|++++|++++..|  +.++++|+.|+|++|
T Consensus       325 l~~l~~L~~L~L~~n~l~~-l~-----~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         325 VSSLTKLQRLFFANNKVSD-VS-----SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CG-----GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             cccCCCCCEEECCCCCCCC-Ch-----hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            4556666666666666654 22     45566666666666666664333  566666666666655

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.79  E-value=2.1e-08  Score=71.16  Aligned_cols=67  Identities=30%  Similarity=0.430  Sum_probs=52.4

Q ss_pred             CcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455           93 SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus        93 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      ..+..+++|+.|++++|.+.. ++     .+..+++|+.|++.+|++++ ++ .++++++|+.|++++|+++ .+|
T Consensus       122 ~~~~~l~~L~~L~l~~n~l~~-~~-----~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~-~i~  188 (199)
T d2omxa2         122 DPLKNLTNLNRLELSSNTISD-IS-----ALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVS-DIS  188 (199)
T ss_dssp             GGGTTCTTCSEEECCSSCCCC-CG-----GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CCG
T ss_pred             cccchhhhhHHhhhhhhhhcc-cc-----cccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCC-CCc
Confidence            346677888888888888765 33     57788899999999999885 33 4889999999999999987 344

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=8.3e-09  Score=74.99  Aligned_cols=99  Identities=21%  Similarity=0.362  Sum_probs=76.3

Q ss_pred             CCCCCceEecCC---------CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCcccccc
Q 038455           53 CDAWEGVMCNAT---------TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSF  123 (170)
Q Consensus        53 c~~w~gv~c~~~---------~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~  123 (170)
                      |+ ...|.|...         ...++.|+++++. ++        .++...|.++++|++|++++|.+...++..   .|
T Consensus         8 C~-~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~-i~--------~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~---~f   74 (242)
T d1xwdc1           8 CS-NRVFLCQESKVTEIPSDLPRNAIELRFVLTK-LR--------VIQKGAFSGFGDLEKIEISQNDVLEVIEAD---VF   74 (242)
T ss_dssp             EC-SSEEEEESCSCSSCCSCSCSCCSEEEEESCC-CC--------EECTTTTTTCTTCCEEEEESCTTCCEECSS---SE
T ss_pred             Cc-CCEEEEeCCCCCCcCCCCCCCCCEEECcCCc-CC--------ccChhHhhccchhhhhhhccccccceeecc---cc
Confidence            66 778888531         1246777777776 43        445667899999999999999987765541   57


Q ss_pred             CCCCCCCEEECCC-CCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455          124 GSLKQLKMLNLGF-NYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus       124 ~~l~~L~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      ..++.++.+.+.. |.+....+..|..+++|+.+++++|.+.
T Consensus        75 ~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          75 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             ESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhc
Confidence            7889999998754 6777677788999999999999999887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.70  E-value=2.6e-08  Score=76.40  Aligned_cols=81  Identities=26%  Similarity=0.292  Sum_probs=67.1

Q ss_pred             CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh
Q 038455           66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP  145 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~  145 (170)
                      ..+++|++++++ ++.+          ..+..|++|++|++++|+|++. |     .++++++|++|++++|++.+. + 
T Consensus        44 ~~l~~L~l~~~~-I~~l----------~gl~~L~nL~~L~Ls~N~l~~l-~-----~l~~L~~L~~L~L~~n~i~~i-~-  104 (384)
T d2omza2          44 DQVTTLQADRLG-IKSI----------DGVEYLNNLTQINFSNNQLTDI-T-----PLKNLTKLVDILMNNNQIADI-T-  104 (384)
T ss_dssp             TTCCEEECCSSC-CCCC----------TTGGGCTTCCEEECCSSCCCCC-G-----GGTTCTTCCEEECCSSCCCCC-G-
T ss_pred             CCCCEEECCCCC-CCCc----------cccccCCCCCEEeCcCCcCCCC-c-----cccCCcccccccccccccccc-c-
Confidence            358888888887 3322          3477899999999999999984 4     588999999999999999854 3 


Q ss_pred             hccCCCCCCEEeCCCCcCcc
Q 038455          146 YLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus       146 ~~~~l~~L~~L~L~~N~l~g  165 (170)
                      .++.+++|+.|++++|.+++
T Consensus       105 ~l~~l~~L~~L~~~~~~~~~  124 (384)
T d2omza2         105 PLANLTNLTGLTLFNNQITD  124 (384)
T ss_dssp             GGTTCTTCCEEECCSSCCCC
T ss_pred             cccccccccccccccccccc
Confidence            38899999999999999875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.69  E-value=3.6e-08  Score=70.55  Aligned_cols=79  Identities=34%  Similarity=0.343  Sum_probs=49.9

Q ss_pred             CeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhh
Q 038455           67 RVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY  146 (170)
Q Consensus        67 ~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~  146 (170)
                      +++.|+++++. ++.+          ..+..+++|++|++++|+++. +|     .+..+++|+.|++++|.+. .+ ..
T Consensus        69 ~L~~L~L~~n~-i~~l----------~~~~~l~~L~~L~l~~n~i~~-l~-----~l~~l~~L~~L~l~~~~~~-~~-~~  129 (210)
T d1h6ta2          69 NVTKLFLNGNK-LTDI----------KPLANLKNLGWLFLDENKVKD-LS-----SLKDLKKLKSLSLEHNGIS-DI-NG  129 (210)
T ss_dssp             TCCEEECCSSC-CCCC----------GGGTTCTTCCEEECCSSCCCC-GG-----GGTTCTTCCEEECTTSCCC-CC-GG
T ss_pred             CCCEEeCCCcc-ccCc----------cccccCccccccccccccccc-cc-----ccccccccccccccccccc-cc-cc
Confidence            45666666655 3222          234567777777777777765 33     4666777777777777765 23 34


Q ss_pred             ccCCCCCCEEeCCCCcCc
Q 038455          147 LNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus       147 ~~~l~~L~~L~L~~N~l~  164 (170)
                      +..++.++.++++.|.++
T Consensus       130 l~~l~~l~~l~~~~n~l~  147 (210)
T d1h6ta2         130 LVHLPQLESLYLGNNKIT  147 (210)
T ss_dssp             GGGCTTCCEEECCSSCCC
T ss_pred             cccccccccccccccccc
Confidence            666777777777777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.66  E-value=7.1e-08  Score=68.98  Aligned_cols=66  Identities=35%  Similarity=0.382  Sum_probs=48.3

Q ss_pred             cCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455           94 LFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus        94 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      .+..+++|+.++++.|.++..  .    .+..+++|+.+++++|++.+ ++ .+.++++|+.|+|++|+++ .+|
T Consensus       129 ~l~~l~~l~~l~~~~n~l~~~--~----~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~-~l~  194 (210)
T d1h6ta2         129 GLVHLPQLESLYLGNNKITDI--T----VLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS-DLR  194 (210)
T ss_dssp             GGGGCTTCCEEECCSSCCCCC--G----GGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-BCG
T ss_pred             ccccccccccccccccccccc--c----cccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCC-CCh
Confidence            455556666666666666542  2    46678889999999999985 43 3888999999999999987 454

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.63  E-value=7e-08  Score=68.39  Aligned_cols=80  Identities=24%  Similarity=0.306  Sum_probs=58.8

Q ss_pred             CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh
Q 038455           66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP  145 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~  145 (170)
                      ..++.|+++++. ++..          ..+..+++|++|+++.|.+.. ++     .+..++.|+.|++++|.+...  +
T Consensus        62 ~nL~~L~Ls~N~-l~~~----------~~l~~l~~L~~L~l~~n~~~~-~~-----~l~~l~~L~~L~l~~~~~~~~--~  122 (199)
T d2omxa2          62 NNLTQINFSNNQ-LTDI----------TPLKNLTKLVDILMNNNQIAD-IT-----PLANLTNLTGLTLFNNQITDI--D  122 (199)
T ss_dssp             TTCCEEECCSSC-CCCC----------GGGTTCTTCCEEECCSSCCCC-CG-----GGTTCTTCSEEECCSSCCCCC--G
T ss_pred             CCcCcCcccccc-ccCc----------ccccCCccccccccccccccc-cc-----ccccccccccccccccccccc--c
Confidence            356666666665 3322          237788888888888888765 33     577888899999988888743  3


Q ss_pred             hccCCCCCCEEeCCCCcCc
Q 038455          146 YLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus       146 ~~~~l~~L~~L~L~~N~l~  164 (170)
                      .+..+++|+.|++++|++.
T Consensus       123 ~~~~l~~L~~L~l~~n~l~  141 (199)
T d2omxa2         123 PLKNLTNLNRLELSSNTIS  141 (199)
T ss_dssp             GGTTCTTCSEEECCSSCCC
T ss_pred             ccchhhhhHHhhhhhhhhc
Confidence            4778899999999999886

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.60  E-value=1.3e-07  Score=68.11  Aligned_cols=67  Identities=24%  Similarity=0.335  Sum_probs=53.3

Q ss_pred             CcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455           93 SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT  168 (170)
Q Consensus        93 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP  168 (170)
                      ..+..+++|+.|++++|.+... +     .+..+++|+.|++++|++.+ ++ .+..+++|++|+|++|+++ .+|
T Consensus       145 ~~~~~~~~L~~L~l~~n~~~~~-~-----~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt-~i~  211 (227)
T d1h6ua2         145 SPLAGLTNLQYLSIGNAQVSDL-T-----PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQIS-DVS  211 (227)
T ss_dssp             GGGGGCTTCCEEECCSSCCCCC-G-----GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCC-BCG
T ss_pred             hhhccccccccccccccccccc-h-----hhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCC-CCc
Confidence            3456778899999999988753 2     57888999999999999985 44 3788999999999999988 344

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.56  E-value=6e-08  Score=69.93  Aligned_cols=61  Identities=20%  Similarity=0.294  Sum_probs=52.2

Q ss_pred             CCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCC
Q 038455           92 MSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY  160 (170)
Q Consensus        92 ~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~  160 (170)
                      ...+..+++|+.|++++|++++ ++     .+..+++|++|++++|+++. ++ .++++++|+.|++++
T Consensus       166 ~~~l~~l~~L~~L~Ls~n~l~~-l~-----~l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         166 LTPLANLSKLTTLKADDNKISD-IS-----PLASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CGGGTTCTTCCEEECCSSCCCC-CG-----GGGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEE
T ss_pred             chhhcccccceecccCCCccCC-Ch-----hhcCCCCCCEEECcCCcCCC-Cc-ccccCCCCCEEEeeC
Confidence            3457899999999999999987 44     57889999999999999995 44 389999999999863

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.43  E-value=2.1e-09  Score=76.80  Aligned_cols=43  Identities=23%  Similarity=0.244  Sum_probs=31.3

Q ss_pred             ccCCCCCCCEEECCCCCCCCCCh--hhccCCCCCCEEeCCCCcCcc
Q 038455          122 SFGSLKQLKMLNLGFNYVNDSIL--PYLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus       122 ~~~~l~~L~~L~Ls~N~l~g~~p--~~~~~l~~L~~L~L~~N~l~g  165 (170)
                      .+..+++|+.|++++|+|+. ++  ..+..+++|+.|++++|++..
T Consensus       110 ~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         110 GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccccccccccccccchhcc-ccccccccCCCccceeecCCCcccc
Confidence            35566778888888888773 33  357788888888888887763

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.41  E-value=3.1e-09  Score=75.94  Aligned_cols=81  Identities=25%  Similarity=0.342  Sum_probs=64.0

Q ss_pred             CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh
Q 038455           66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP  145 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~  145 (170)
                      ..++.|+|+++. ++.        +  +.+..+++|+.|++++|.++. +|.    .+..++.|+.|++++|+++. + +
T Consensus        48 ~~L~~L~Ls~n~-I~~--------i--~~l~~l~~L~~L~Ls~N~i~~-i~~----~~~~~~~L~~L~l~~N~i~~-l-~  109 (198)
T d1m9la_          48 KACKHLALSTNN-IEK--------I--SSLSGMENLRILSLGRNLIKK-IEN----LDAVADTLEELWISYNQIAS-L-S  109 (198)
T ss_dssp             TTCCEEECSEEE-ESC--------C--CCHHHHTTCCEEECCEEEECS-CSS----HHHHHHHCCEEECSEEECCC-H-H
T ss_pred             cccceeECcccC-CCC--------c--ccccCCccccChhhccccccc-ccc----cccccccccccccccccccc-c-c
Confidence            357788888776 332        2  347789999999999999986 554    55566789999999999984 4 3


Q ss_pred             hccCCCCCCEEeCCCCcCc
Q 038455          146 YLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus       146 ~~~~l~~L~~L~L~~N~l~  164 (170)
                      .+..+++|+.|++++|+++
T Consensus       110 ~~~~l~~L~~L~L~~N~i~  128 (198)
T d1m9la_         110 GIEKLVNLRVLYMSNNKIT  128 (198)
T ss_dssp             HHHHHHHSSEEEESEEECC
T ss_pred             cccccccccccccccchhc
Confidence            5788999999999999987

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.4e-07  Score=64.97  Aligned_cols=66  Identities=26%  Similarity=0.165  Sum_probs=36.4

Q ss_pred             CCCCCCCEEeccCCccCccc--cCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455           96 HPFEELQSLDLSENWFTGIY--ENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus        96 ~~l~~L~~L~ls~N~l~~~~--p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g  165 (170)
                      ..++.|++|+|++|+++..-  +.    .+..+++|+.|++++|.|+...+-.+-....|+.|++++|+++.
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~----~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSS----IVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGT----HHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHH----HHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            34566666666666665431  22    34456666666666666663222223333456666666666653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.17  E-value=2.1e-06  Score=64.40  Aligned_cols=61  Identities=20%  Similarity=0.234  Sum_probs=50.2

Q ss_pred             CCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCCC
Q 038455           96 HPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTK  169 (170)
Q Consensus        96 ~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~  169 (170)
                      ..+++|++|++++|+++. +|.    .   +++|+.|++++|+|+ .+|+   .+++|+.|++++|+++ .+|.
T Consensus       281 ~~~~~L~~L~Ls~N~l~~-lp~----~---~~~L~~L~L~~N~L~-~l~~---~~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         281 DLPPSLEELNVSNNKLIE-LPA----L---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             CCCTTCCEEECCSSCCSC-CCC----C---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-SCCC
T ss_pred             ccCCCCCEEECCCCccCc-ccc----c---cCCCCEEECCCCcCC-cccc---ccCCCCEEECcCCcCC-CCCc
Confidence            345789999999999986 564    4   578999999999998 6775   3568999999999998 6774

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.13  E-value=6.1e-06  Score=61.78  Aligned_cols=55  Identities=18%  Similarity=0.282  Sum_probs=34.7

Q ss_pred             CCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455          100 ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus       100 ~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      +|+.|++++|.++. ++.     +  .+.|++|++++|.+. .+|. ++.+++|+.|++++|.++
T Consensus        79 ~L~~L~l~~n~l~~-l~~-----l--p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_          79 SLKSLLVDNNNLKA-LSD-----L--PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             TCCEEECCSSCCSC-CCS-----C--CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS
T ss_pred             hhhhhhhhhcccch-hhh-----h--ccccccccccccccc-cccc-hhhhccceeecccccccc
Confidence            45555555555543 221     1  135778888888777 4553 567788888888887776

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1e-05  Score=58.04  Aligned_cols=72  Identities=19%  Similarity=0.068  Sum_probs=46.2

Q ss_pred             CCcCCCCC-CCCEEeccCCccCccccCccccccCCCCCCCEE-ECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCCC
Q 038455           92 MSLFHPFE-ELQSLDLSENWFTGIYENRAYDSFGSLKQLKML-NLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTK  169 (170)
Q Consensus        92 ~~~~~~l~-~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L-~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~  169 (170)
                      ...|..++ .++.|+++.|+++...+     ......+++.+ ++++|+++...+..|.++++|++|+|++|+|+ .+|.
T Consensus       145 ~~~~~~~~~~l~~L~l~~n~l~~i~~-----~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~  218 (242)
T d1xwdc1         145 RNSFVGLSFESVILWLNKNGIQEIHN-----CAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS  218 (242)
T ss_dssp             TTSSTTSBSSCEEEECCSSCCCEECT-----TTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCS
T ss_pred             ccccccccccceeeeccccccccccc-----ccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCH
Confidence            34444443 67778888888876433     33344454444 46677777443445788888888888888887 6664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=8.3e-07  Score=60.87  Aligned_cols=86  Identities=22%  Similarity=0.167  Sum_probs=60.5

Q ss_pred             CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh
Q 038455           66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP  145 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~  145 (170)
                      ..++.|+|+++. ++.+     ..+ ...+..+++|+.|++++|.++...+-    .+-....|+.|++++|.+......
T Consensus        65 ~~L~~L~Ls~N~-i~~l-----~~~-~~~~~~l~~L~~L~Ls~N~i~~l~~l----~~l~~~~L~~L~L~~Npl~~~~~~  133 (162)
T d1koha1          65 PELLSLNLSNNR-LYRL-----DDM-SSIVQKAPNLKILNLSGNELKSEREL----DKIKGLKLEELWLDGNSLSDTFRD  133 (162)
T ss_dssp             TTCCCCCCCSSC-CCCC-----SGG-GTHHHHSTTCCCCCCTTSCCCCGGGH----HHHTTCCCSSCCCTTSTTSSSSSS
T ss_pred             CCCCEeeCCCcc-ccCC-----chh-HHHHhhCCcccccccccCccccchhh----hhhhccccceeecCCCCcCcCccc
Confidence            467888888887 4433     001 23456789999999999999875332    233345799999999999865442


Q ss_pred             -------hccCCCCCCEEeCCCCcCc
Q 038455          146 -------YLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus       146 -------~~~~l~~L~~L~L~~N~l~  164 (170)
                             .+..+++|+.||  ++.+.
T Consensus       134 ~~~y~~~i~~~~P~L~~LD--g~~v~  157 (162)
T d1koha1         134 QSTYISAIRERFPKLLRLD--GHELP  157 (162)
T ss_dssp             HHHHHHHHHTTSTTCCEET--TEECC
T ss_pred             chhHHHHHHHHCCCCCEEC--cCCCc
Confidence                   256789999886  55543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=5.8e-06  Score=63.85  Aligned_cols=71  Identities=20%  Similarity=0.204  Sum_probs=50.0

Q ss_pred             cCCCCCCCCEEeccCCccCccccCccccccC-CCCCCCEEECCCCCCCCC----ChhhccCCCCCCEEeCCCCcCc
Q 038455           94 LFHPFEELQSLDLSENWFTGIYENRAYDSFG-SLKQLKMLNLGFNYVNDS----ILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        94 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~-~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      .+..+++|+.|+|++|.++...-..-...+. ...+|+.|++++|.++..    ++..+..+++|+.|++++|.++
T Consensus        50 ~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          50 ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             HHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            3567889999999999885321100000222 235799999999998743    4566788999999999999875

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.00013  Score=53.78  Aligned_cols=62  Identities=24%  Similarity=0.193  Sum_probs=47.7

Q ss_pred             CCCCCCCEEeccCC-ccCccccCccccccCCCCCCCEEECCCC-CCCCCChhhccCCCCCCEEeCCCC
Q 038455           96 HPFEELQSLDLSEN-WFTGIYENRAYDSFGSLKQLKMLNLGFN-YVNDSILPYLNTLTSLTTLNLSYN  161 (170)
Q Consensus        96 ~~l~~L~~L~ls~N-~l~~~~p~~~~~~~~~l~~L~~L~Ls~N-~l~g~~p~~~~~l~~L~~L~L~~N  161 (170)
                      ..+++|++|+++++ .+++....    .+..+++|++|+++++ .++......++++++|+.|+++++
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~----~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQ----EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGG----GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccCCCchhhh----hhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            45678999999876 46655554    7888889999999884 677666667888889999998776

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.32  E-value=1.6e-05  Score=60.15  Aligned_cols=42  Identities=29%  Similarity=0.355  Sum_probs=19.2

Q ss_pred             CCCCCCCCEEeccCCccCcc----ccCccccccCCCCCCCEEECCCCCCC
Q 038455           95 FHPFEELQSLDLSENWFTGI----YENRAYDSFGSLKQLKMLNLGFNYVN  140 (170)
Q Consensus        95 ~~~l~~L~~L~ls~N~l~~~----~p~~~~~~~~~l~~L~~L~Ls~N~l~  140 (170)
                      +..+++|+.|++++|.++..    +..    .+...++|+.|+|++|.|+
T Consensus       211 l~~~~~L~~L~Ls~N~i~~~g~~~L~~----~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         211 LAYCQELKVLDLQDNTFTHLGSSALAI----ALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             GGGCTTCCEEECCSSCCHHHHHHHHHH----HGGGCTTCCEEECTTCCCC
T ss_pred             hcchhhhcccccccccccccccccccc----cccccccchhhhhhcCccC
Confidence            34445555555555554321    111    3344455555555555544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=4.3e-05  Score=58.77  Aligned_cols=63  Identities=29%  Similarity=0.240  Sum_probs=40.5

Q ss_pred             CCCCCEEeccCCccCcc----ccCccccccC-CCCCCCEEECCCCCCCCC----ChhhccCCCCCCEEeCCCCcCc
Q 038455           98 FEELQSLDLSENWFTGI----YENRAYDSFG-SLKQLKMLNLGFNYVNDS----ILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus        98 l~~L~~L~ls~N~l~~~----~p~~~~~~~~-~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                      .++|++|+|++|.++..    +..    .+. ..+.|++|+|++|.|+..    ++..+..+++|++|+|++|+|+
T Consensus       339 ~~~L~~L~Ls~N~i~~~g~~~l~~----~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         339 NRFLLELQISNNRLEDAGVRELCQ----GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             CSSCCEEECCSSBCHHHHHHHHHH----HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             ccchhhhheeeecccCcccchhhh----hhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence            45678888888777532    111    222 356678888888877632    3445566777888888888775

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=8.8e-05  Score=54.74  Aligned_cols=84  Identities=21%  Similarity=0.233  Sum_probs=61.2

Q ss_pred             CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCC-CCCCC-C
Q 038455           66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFN-YVNDS-I  143 (170)
Q Consensus        66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N-~l~g~-~  143 (170)
                      .+++.|+++++. +...       .....+..+++|++|+++++.++...+.    .+..+++|+.|+++++ .++.. +
T Consensus        46 ~~L~~LdLs~~~-i~~~-------~l~~l~~~c~~L~~L~L~~~~l~~~~~~----~l~~~~~L~~L~Ls~c~~itd~~l  113 (284)
T d2astb2          46 FRVQHMDLSNSV-IEVS-------TLHGILSQCSKLQNLSLEGLRLSDPIVN----TLAKNSNLVRLNLSGCSGFSEFAL  113 (284)
T ss_dssp             BCCCEEECTTCE-ECHH-------HHHHHHTTBCCCSEEECTTCBCCHHHHH----HHTTCTTCSEEECTTCBSCCHHHH
T ss_pred             CCCCEEECCCCc-cCHH-------HHHHHHHhCCCcccccccccCCCcHHHH----HHhcCCCCcCcccccccccccccc
Confidence            467888888765 3211       0123467889999999999998876666    7888999999999985 56532 2


Q ss_pred             hhhccCCCCCCEEeCCCC
Q 038455          144 LPYLNTLTSLTTLNLSYN  161 (170)
Q Consensus       144 p~~~~~l~~L~~L~L~~N  161 (170)
                      ..-...+++|++|+++++
T Consensus       114 ~~l~~~~~~L~~L~ls~c  131 (284)
T d2astb2         114 QTLLSSCSRLDELNLSWC  131 (284)
T ss_dssp             HHHHHHCTTCCEEECCCC
T ss_pred             chhhHHHHhccccccccc
Confidence            233467899999999884

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.83  E-value=0.0002  Score=53.78  Aligned_cols=66  Identities=17%  Similarity=0.185  Sum_probs=51.1

Q ss_pred             CCCCCCCEEeccCCccCcc-----ccCccccccCCCCCCCEEECCCCCCCCC----ChhhccCCCCCCEEeCCCCcCcc
Q 038455           96 HPFEELQSLDLSENWFTGI-----YENRAYDSFGSLKQLKMLNLGFNYVNDS----ILPYLNTLTSLTTLNLSYNKIEG  165 (170)
Q Consensus        96 ~~l~~L~~L~ls~N~l~~~-----~p~~~~~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~L~~N~l~g  165 (170)
                      ...+.|+.|+++.|.+...     +..    .+..+++|+.|+++.|.++..    +...+..+++|+.|+|++|.+++
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~----~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLE----GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  257 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHT----TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             hhhhhhcccccccccccccccccchhh----hhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCc
Confidence            4467899999999988642     223    567789999999999998532    44567788999999999998863

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.42  E-value=0.0007  Score=45.85  Aligned_cols=42  Identities=14%  Similarity=0.063  Sum_probs=17.5

Q ss_pred             CCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCC
Q 038455           98 FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYV  139 (170)
Q Consensus        98 l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l  139 (170)
                      .+.|+.|+|++|.++..--..-+..+..-+.|++|++++|.+
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcC
Confidence            344555555555554321100001234444555555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.28  E-value=0.0014  Score=44.35  Aligned_cols=96  Identities=9%  Similarity=0.154  Sum_probs=62.4

Q ss_pred             CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCC--
Q 038455           65 TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDS--  142 (170)
Q Consensus        65 ~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~--  142 (170)
                      ...+++|+|++...+....   ...+ ...+...+.|+.|+|++|.+.......-...+...+.|+.|+|++|.|...  
T Consensus        14 ~~~L~~L~L~~~~~i~~~~---~~~l-~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~   89 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKER---IRSL-IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL   89 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHH---HHHH-HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHH---HHHH-HHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHH
Confidence            4678899998644121110   0001 123556678999999999986432220001345568899999999999743  


Q ss_pred             --ChhhccCCCCCCEEeCCCCcCc
Q 038455          143 --ILPYLNTLTSLTTLNLSYNKIE  164 (170)
Q Consensus       143 --~p~~~~~l~~L~~L~L~~N~l~  164 (170)
                        +-..+...+.|+.|++++|.+.
T Consensus        90 ~~l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          90 ARLLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHHHHhCCcCCEEECCCCcCC
Confidence              2335677789999999998654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.62  E-value=0.0068  Score=40.46  Aligned_cols=96  Identities=14%  Similarity=0.123  Sum_probs=59.4

Q ss_pred             CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCC--
Q 038455           65 TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDS--  142 (170)
Q Consensus        65 ~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~--  142 (170)
                      ...+++|+|++...++.-.   ... -...+...++|++|++++|.++...-..-...+...+.++.++++.|.+...  
T Consensus        16 ~~~L~~L~L~~~~~i~~~~---~~~-l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~   91 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPT---LKA-CAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI   91 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHH---HHH-HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHH---HHH-HHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhH
Confidence            4578888887643121110   000 0223557789999999999886532210001456678999999999998643  


Q ss_pred             --ChhhccCCCCCCEEeC--CCCcCc
Q 038455          143 --ILPYLNTLTSLTTLNL--SYNKIE  164 (170)
Q Consensus       143 --~p~~~~~l~~L~~L~L--~~N~l~  164 (170)
                        +-..+...++|+.++|  +.|.+.
T Consensus        92 ~~l~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          92 LALVEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHHhCccccEEeeccCCCcCc
Confidence              3345677888987666  456653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.06  E-value=0.013  Score=38.92  Aligned_cols=94  Identities=17%  Similarity=0.159  Sum_probs=60.3

Q ss_pred             CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEEC--CCCCCCC-
Q 038455           65 TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNL--GFNYVND-  141 (170)
Q Consensus        65 ~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~L--s~N~l~g-  141 (170)
                      ..++++|+++++. +......   .+ ...+...+.++.++++.|.+....-..-+..+...+.|+.++|  +.|.+.. 
T Consensus        45 n~~L~~L~Ls~n~-l~~~~~~---~L-~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~  119 (166)
T d1io0a_          45 NTYVKKFSIVGTR-SNDPVAF---AL-AEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN  119 (166)
T ss_dssp             CCSCCEEECTTSC-CCHHHHH---HH-HHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred             CCccCeeeccCCc-ccHHHHH---HH-HHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHH
Confidence            4578999999887 4322100   01 1234566789999999998864321100115677888987666  4566653 


Q ss_pred             ---CChhhccCCCCCCEEeCCCCcC
Q 038455          142 ---SILPYLNTLTSLTTLNLSYNKI  163 (170)
Q Consensus       142 ---~~p~~~~~l~~L~~L~L~~N~l  163 (170)
                         .+...+...+.|+.|+++.+..
T Consensus       120 ~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         120 VEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHHhCCCcCEEeCcCCCC
Confidence               2445667889999999988764