Citrus Sinensis ID: 038457

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
MNDLLTDSFVSDARGQPSRDNDIEMGTRVPRSSSDMGMEGFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQKPGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLRQRIQEEYREVVERRVITVTGTRPDEETIDHLIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQKSSRKWMCIAIIILLIIVAVIVVGVIKPWKSGNS
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccc
ccccccHHHHHHHHccHHHccHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccccHHHHHHHHHcccHHHHHHHHHHHcccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHcHHcHHHHHHHHHHHHHHHHHHHHHHHccHHcccc
mndlltdsfvsdargqpsrdndiemgtrvprsssdmgmegFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRenlanrqkpgcekgtsvdrSRMNVTNALTKRFKELMTEFQTLRQRIQEEYREVVERRVITvtgtrpdeetIDHLIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQKSSRKWMCIAIIILLIIVAVIVVGVikpwksgns
mndlltdsfvsdargqpsrdndiemgtrvprsssdmgMEGFNKQIQEIEKQVDKLSALLKKlkdaneesksvtkasemkaikkrmekdvdevgkiARNVKAKieainrenlanrqkpgcekgtsvdrsrmnVTNALTKRFKELMTEFQTLRQRIQEEYREVVErrvitvtgtrpdeetidHLIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQnakkhqksSRKWMCIAIIILLIIVAVIVVGVIKPWKSGNS
MNDLLTDSFVSDARGQPSRDNDIEMGTRVPRSSSDMGMEGFNKQIQEIEKQVdklsallkklkdaNEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQKPGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLrqriqeeyrevverrvitvtGTRPDEETIDHLIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQKSSRKWMCiaiiilliivavivvgviKPWKSGNS
**************************************************************************************************************************************ALTKRFKELMTEFQTLRQRIQEEYREVVERRVITVTGTRPDEETIDHLIETG***QIFQKAI*****GQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQV************************RKWMCIAIIILLIIVAVIVVGVIKPW*****
MNDL************************************FNKQIQEIEKQVDKLSALLKKLKD**************************EVGKIARNVKAKIE**************************NVTNALTKRFKELMTE***************************************************************EIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQKSSRKWMCIAIIILLIIVAVIVVGVIKPWKS***
MNDLLTDSFVSDARGQPSRDNDIEMGTRVPRSSSDMGMEGFNKQIQEIEKQVDKLSALLKKLK***************KAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQKPGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLRQRIQEEYREVVERRVITVTGTRPDEETIDHLIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQS****************KWMCIAIIILLIIVAVIVVGVIKPWKSGNS
****LTDSFVSDARGQ*****************SDMGMEGFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQ******GTSVDRSRMNVTNALTKRFKELMTEFQTLRQRIQEEYREVVERRVITVTGTRPDEETIDHLIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQKSSRKWMCIAIIILLIIVAVIVVGVIKPWK****
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MNDLLTDSFVSDARGQPSRDNDIEMGTRVPRSSSDMGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQKPGCEKGTSVDRSRMNVTNALTKRxxxxxxxxxxxxxxxxxxxxxVVERRVITVTGTRPDEETIDHLIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQKSSRKWMCIAIIILLIIVAVIVVGVIKPWKSGNS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query308 2.2.26 [Sep-21-2011]
Q9SRV7306 Putative syntaxin-131 OS= yes no 0.990 0.996 0.639 1e-102
Q8VZU2304 Syntaxin-132 OS=Arabidops no no 0.977 0.990 0.701 7e-99
O64791303 Syntaxin-124 OS=Arabidops no no 0.951 0.966 0.450 7e-73
Q9SXB0298 Syntaxin-125 OS=Arabidops no no 0.889 0.919 0.478 2e-71
Q9ZSD4346 Syntaxin-121 OS=Arabidops no no 0.983 0.875 0.466 2e-66
Q9ZQZ8305 Syntaxin-123 OS=Arabidops no no 0.905 0.914 0.477 8e-66
Q9SVC2341 Syntaxin-122 OS=Arabidops no no 0.987 0.891 0.463 1e-63
Q42374310 Syntaxin-related protein no no 0.892 0.887 0.406 3e-54
Q9ZPV9305 Syntaxin-112 OS=Arabidops no no 0.951 0.960 0.323 2e-42
P32856288 Syntaxin-2 OS=Homo sapien yes no 0.824 0.881 0.288 8e-22
>sp|Q9SRV7|SY131_ARATH Putative syntaxin-131 OS=Arabidopsis thaliana GN=SYP131 PE=3 SV=1 Back     alignment and function desciption
 Score =  371 bits (952), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/308 (63%), Positives = 248/308 (80%), Gaps = 3/308 (0%)

Query: 1   MNDLLTDSFVSDARGQPSRDNDIEMGTRVPRSSSDMGMEGFNKQIQEIEKQVDKLSALLK 60
           MNDLL  S +  +R + +R +DIE G   P +S D+G+ GF K++QEIEKQ +KL   L 
Sbjct: 1   MNDLLKGS-LEFSRDRSNR-SDIESG-HGPGNSGDLGLSGFFKKVQEIEKQYEKLDKHLN 57

Query: 61  KLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQKPGCE 120
           KL+ A+EE+K+VTKA  MK+IK+RME+DVDEVG+I+R +K KIE ++RENL NR KPGC 
Sbjct: 58  KLQGAHEETKAVTKAPAMKSIKQRMERDVDEVGRISRFIKGKIEELDRENLENRTKPGCG 117

Query: 121 KGTSVDRSRMNVTNALTKRFKELMTEFQTLRQRIQEEYREVVERRVITVTGTRPDEETID 180
           KGT VDR+R   T A+ K+FK+ ++EFQTLRQ IQ+EYREVVERRV TVTG R DEE ID
Sbjct: 118 KGTGVDRTRTATTIAVKKKFKDKISEFQTLRQNIQQEYREVVERRVFTVTGQRADEEAID 177

Query: 181 HLIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVE 240
            LIETG+SEQIFQKAI+EQGRGQ+++TL EIQERHDAV+++EKKLLDLQQ+++DMAVLV+
Sbjct: 178 RLIETGDSEQIFQKAIREQGRGQIMDTLAEIQERHDAVRDLEKKLLDLQQVFLDMAVLVD 237

Query: 241 AQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQKSSRKWMCIAIIILLIIVAVIVVGVI 300
           AQGE+LDNIE+ VS+AV +VQSG   L  A K QKSSRKWMCIAI+ILLII+ + V+ V+
Sbjct: 238 AQGEMLDNIENMVSSAVDHVQSGNNQLTKAVKSQKSSRKWMCIAILILLIIIIITVISVL 297

Query: 301 KPWKSGNS 308
           KPW   N 
Sbjct: 298 KPWTQKNG 305
Vesicle trafficking protein that functions in the secretory pathway.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8VZU2|SY132_ARATH Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=1 SV=1 Back     alignment and function description
>sp|O64791|SY124_ARATH Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=2 SV=1 Back     alignment and function description
>sp|Q9SXB0|SY125_ARATH Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZSD4|SY121_ARATH Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZQZ8|SY123_ARATH Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=2 SV=1 Back     alignment and function description
>sp|Q9SVC2|SY122_ARATH Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=1 SV=1 Back     alignment and function description
>sp|Q42374|SY111_ARATH Syntaxin-related protein KNOLLE OS=Arabidopsis thaliana GN=KN PE=1 SV=1 Back     alignment and function description
>sp|Q9ZPV9|SY112_ARATH Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=2 SV=2 Back     alignment and function description
>sp|P32856|STX2_HUMAN Syntaxin-2 OS=Homo sapiens GN=STX2 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query308
357453477307 Syntaxin-132 [Medicago truncatula] gi|35 0.990 0.993 0.833 1e-136
217072938307 unknown [Medicago truncatula] 0.990 0.993 0.833 1e-136
359806652306 uncharacterized protein LOC100807404 [Gl 0.987 0.993 0.830 1e-135
255577735308 syntaxin, putative [Ricinus communis] gi 0.987 0.987 0.852 1e-135
356543730306 PREDICTED: putative syntaxin-131-like [G 0.987 0.993 0.823 1e-134
388506704310 unknown [Lotus japonicus] 0.990 0.983 0.820 1e-134
449468343305 PREDICTED: putative syntaxin-131-like [C 0.987 0.996 0.759 1e-124
359485569304 PREDICTED: putative syntaxin-131-like [V 0.987 1.0 0.782 1e-123
297739297400 unnamed protein product [Vitis vinifera] 0.987 0.76 0.782 1e-123
449490276305 PREDICTED: putative syntaxin-131-like [C 0.987 0.996 0.753 1e-123
>gi|357453477|ref|XP_003597016.1| Syntaxin-132 [Medicago truncatula] gi|355486064|gb|AES67267.1| Syntaxin-132 [Medicago truncatula] Back     alignment and taxonomy information
 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 255/306 (83%), Positives = 286/306 (93%), Gaps = 1/306 (0%)

Query: 1   MNDLLTDSFVSDA-RGQPSRDNDIEMGTRVPRSSSDMGMEGFNKQIQEIEKQVDKLSALL 59
           MNDLLTDSFVS+A  GQPSR  DIEMG +  RSSSDMGME FNKQIQ+ +KQ++K+SALL
Sbjct: 1   MNDLLTDSFVSEANHGQPSRQGDIEMGLQDQRSSSDMGMEAFNKQIQDADKQIEKVSALL 60

Query: 60  KKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQKPGC 119
           +KLK+ANEESK+VTKAS MKAIKKRMEKD+DEVGKIA  VKAKIEAINRENL NRQKPGC
Sbjct: 61  QKLKEANEESKAVTKASAMKAIKKRMEKDIDEVGKIAHGVKAKIEAINRENLNNRQKPGC 120

Query: 120 EKGTSVDRSRMNVTNALTKRFKELMTEFQTLRQRIQEEYREVVERRVITVTGTRPDEETI 179
           EKGT +DR+RMN+TN+LTK+F++LMTEFQTLRQRIQ+EYREVVERRVITVTGTRPD+ETI
Sbjct: 121 EKGTGIDRARMNMTNSLTKKFRDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETI 180

Query: 180 DHLIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLV 239
           DHLIETGNSEQIFQ+AI E GRGQV++T+EEIQERHDAVKEIEKKLLDL QIY+DMAVLV
Sbjct: 181 DHLIETGNSEQIFQQAILEAGRGQVVSTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLV 240

Query: 240 EAQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQKSSRKWMCIAIIILLIIVAVIVVGV 299
           EAQGEILDNIESQV+NAV +VQ GTTALQ+AKK QK+SRKWMCIAIIILLIIVA+IVVGV
Sbjct: 241 EAQGEILDNIESQVNNAVDHVQRGTTALQSAKKLQKNSRKWMCIAIIILLIIVAIIVVGV 300

Query: 300 IKPWKS 305
           +KPWKS
Sbjct: 301 LKPWKS 306

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|217072938|gb|ACJ84829.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|359806652|ref|NP_001241535.1| uncharacterized protein LOC100807404 [Glycine max] gi|255642273|gb|ACU21401.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255577735|ref|XP_002529743.1| syntaxin, putative [Ricinus communis] gi|223530784|gb|EEF32650.1| syntaxin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356543730|ref|XP_003540313.1| PREDICTED: putative syntaxin-131-like [Glycine max] Back     alignment and taxonomy information
>gi|388506704|gb|AFK41418.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|449468343|ref|XP_004151881.1| PREDICTED: putative syntaxin-131-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359485569|ref|XP_002273906.2| PREDICTED: putative syntaxin-131-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297739297|emb|CBI28948.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449490276|ref|XP_004158558.1| PREDICTED: putative syntaxin-131-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query308
TAIR|locus:2079449306 SYP131 "syntaxin of plants 131 0.987 0.993 0.534 1.6e-77
TAIR|locus:2081476346 SYP121 "syntaxin of plants 121 0.996 0.887 0.376 7e-54
TAIR|locus:2202049298 SYP125 "syntaxin of plants 125 0.883 0.912 0.418 1.1e-53
TAIR|locus:2197749303 SYP124 "syntaxin of plants 124 0.892 0.907 0.415 1.5e-53
TAIR|locus:2125487305 SYP123 "syntaxin of plants 123 0.899 0.908 0.410 4e-51
TAIR|locus:2079894341 SYP122 "syntaxin of plants 122 0.990 0.894 0.390 1.3e-50
TAIR|locus:2025620310 SYP111 "syntaxin of plants 111 0.899 0.893 0.353 2.5e-42
TAIR|locus:2062151305 SYP112 "syntaxin of plants 112 0.889 0.898 0.303 1.3e-31
DICTYBASE|DDB_G0289379333 syn1A "putative syntaxin 1" [D 0.824 0.762 0.264 4.3e-22
DICTYBASE|DDB_G0270556334 syn1B "putative syntaxin 1" [D 0.642 0.592 0.287 3.5e-20
TAIR|locus:2079449 SYP131 "syntaxin of plants 131" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
 Identities = 164/307 (53%), Positives = 207/307 (67%)

Query:     1 MNDLLTDSFVSDARGQPSRDNDIEMGTRVPRSSSDMGMEGFNKQIQEIEKQVXXXXXXXX 60
             MNDLL  S +  +R + +R +DIE G   P +S D+G+ GF K++QEIEKQ         
Sbjct:     1 MNDLLKGS-LEFSRDRSNR-SDIESG-HGPGNSGDLGLSGFFKKVQEIEKQYEKLDKHLN 57

Query:    61 XXXXXNEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQKPGCE 120
                  +EE+K+VTKA  MK+IK+RME+DVDEVG+I+R +K KIE ++RENL NR KPGC 
Sbjct:    58 KLQGAHEETKAVTKAPAMKSIKQRMERDVDEVGRISRFIKGKIEELDRENLENRTKPGCG 117

Query:   121 KGTSVDRSRMNVTNALTKRFKELMTEFQTLXXXXXXXXXXXXXXXXXXXXGTRPDEETID 180
             KGT VDR+R   T A+ K+FK+ ++EFQTL                    G R DEE ID
Sbjct:   118 KGTGVDRTRTATTIAVKKKFKDKISEFQTLRQNIQQEYREVVERRVFTVTGQRADEEAID 177

Query:   181 HLIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVE 240
              LIETG+SEQIFQKAI+EQGRGQ+++TL EIQERHDAV+++EKKLLDLQQ+++DMAVLV+
Sbjct:   178 RLIETGDSEQIFQKAIREQGRGQIMDTLAEIQERHDAVRDLEKKLLDLQQVFLDMAVLVD 237

Query:   241 AQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQKSSRKWMCXXXXXXXXXXXXXXXXXX 300
             AQGE+LDNIE+ VS+AV +VQSG   L  A K QKSSRKWMC                  
Sbjct:   238 AQGEMLDNIENMVSSAVDHVQSGNNQLTKAVKSQKSSRKWMCIAILILLIIIIITVISVL 297

Query:   301 KPWKSGN 307
             KPW   N
Sbjct:   298 KPWTQKN 304
GO:0005484 "SNAP receptor activity" evidence=IEA;TAS
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006886 "intracellular protein transport" evidence=IEA;TAS
GO:0016020 "membrane" evidence=IEA
GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA
GO:0006944 "cellular membrane fusion" evidence=RCA;TAS
TAIR|locus:2081476 SYP121 "syntaxin of plants 121" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202049 SYP125 "syntaxin of plants 125" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197749 SYP124 "syntaxin of plants 124" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125487 SYP123 "syntaxin of plants 123" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079894 SYP122 "syntaxin of plants 122" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025620 SYP111 "syntaxin of plants 111" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062151 SYP112 "syntaxin of plants 112" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0289379 syn1A "putative syntaxin 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270556 syn1B "putative syntaxin 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SRV7SY131_ARATHNo assigned EC number0.63960.99020.9967yesno
Q8VZU2SY132_ARATHNo assigned EC number0.70160.97720.9901nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00026042001
SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (302 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query308
cd00179151 cd00179, SynN, Syntaxin N-terminus domain; syntaxi 2e-33
COG5074280 COG5074, COG5074, t-SNARE complex subunit, syntaxi 4e-19
smart00503117 smart00503, SynN, Syntaxin N-terminal domain 6e-19
pfam00804103 pfam00804, Syntaxin, Syntaxin 2e-13
pfam0573962 pfam05739, SNARE, SNARE domain 1e-12
COG5325283 COG5325, COG5325, t-SNARE complex subunit, syntaxi 2e-11
cd0019360 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se 4e-09
smart0039766 smart00397, t_SNARE, Helical region found in SNARE 8e-09
>gnl|CDD|238105 cd00179, SynN, Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information 
 Score =  119 bits (301), Expect = 2e-33
 Identities = 47/158 (29%), Positives = 85/158 (53%), Gaps = 7/158 (4%)

Query: 38  MEGFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIAR 97
           +E F ++++EI   +DK+S  +++L+  + +  +   A     +K+ +E  V E+ K+A+
Sbjct: 1   LEEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDA--DPELKQELESLVQEIKKLAK 58

Query: 98  NVKAKIEAINRENLANRQKPGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLRQRIQEE 157
            +K K++ +   N  N    G     SVDR R    + L+K+F E+MTEF   +++ +E 
Sbjct: 59  EIKGKLKELEESNEQNEALNGS----SVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRER 114

Query: 158 YREVVERRVITVTGTRPDEETIDHLIETGNSEQIFQKA 195
           Y+E ++R++    G   DEE  D L   GNSE    + 
Sbjct: 115 YKERIQRQLEITGGEATDEELEDMLES-GNSEIFTSQI 151

Length = 151
>gnl|CDD|227406 COG5074, COG5074, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|214699 smart00503, SynN, Syntaxin N-terminal domain Back     alignment and domain information
>gnl|CDD|201451 pfam00804, Syntaxin, Syntaxin Back     alignment and domain information
>gnl|CDD|203323 pfam05739, SNARE, SNARE domain Back     alignment and domain information
>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 308
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 100.0
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 100.0
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 100.0
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 100.0
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 99.93
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 99.87
cd00179151 SynN Syntaxin N-terminus domain; syntaxins are ner 99.87
smart00503117 SynN Syntaxin N-terminal domain. Three-helix domai 99.6
PF0573963 SNARE: SNARE domain; InterPro: IPR000727 The proce 99.56
PF00804103 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins 99.46
cd0019360 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu 99.42
smart0039766 t_SNARE Helical region found in SNAREs. All alpha- 99.28
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 98.92
KOG3894316 consensus SNARE protein Syntaxin 18/UFE1 [Intracel 98.63
PF14523102 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A. 98.55
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 98.06
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 97.92
KOG3385118 consensus V-SNARE [Intracellular trafficking, secr 97.56
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 96.92
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 96.65
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 96.64
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 96.31
KOG1666220 consensus V-SNARE [Intracellular trafficking, secr 95.78
PF05478 806 Prominin: Prominin; InterPro: IPR008795 The promin 94.92
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 93.68
KOG3065273 consensus SNAP-25 (synaptosome-associated protein) 92.98
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 92.33
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 88.99
PF0390892 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr 88.65
PF1291156 OppC_N: N-terminal TM domain of oligopeptide trans 83.31
PRK10884206 SH3 domain-containing protein; Provisional 82.75
KOG0859217 consensus Synaptobrevin/VAMP-like protein [Intrace 82.74
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 81.42
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=4.7e-56  Score=401.63  Aligned_cols=291  Identities=40%  Similarity=0.635  Sum_probs=258.0

Q ss_pred             CcchhhhhhccccCCCCCCCcCcccC----CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChh
Q 038457            1 MNDLLTDSFVSDARGQPSRDNDIEMG----TRVPRSSSDMGMEGFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKAS   76 (308)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~e~~----~~~~~~~~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~   76 (308)
                      |||+++.+|-++.      ..|.|++    .. .+...+.+|+.||..|++|+..|..+...+.+|..+|...++  .+.
T Consensus         1 M~d~~~~~~~~~~------~~~~e~~~~~~~~-~~~~~~~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~--~~~   71 (297)
T KOG0810|consen    1 MNDRLSELLARSV------SEDNELDDVEGHT-GSADGDSNLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLH--SPN   71 (297)
T ss_pred             CccccHHHHcCch------hhccccccccccc-CCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhc--ccc
Confidence            9999999995443      3333333    21 123334889999999999999999999999999999976654  445


Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038457           77 EMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQKPGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLRQRIQE  156 (308)
Q Consensus        77 ~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l~~~~~~~~~~~~~~~~~~~~r~r~~~~~~L~~~f~~~~~~f~~~q~~~~~  156 (308)
                      ..++++++|+.++.++.+.++.|+.+|+.+++++......+   +.++..|+|++++..++++|.++|.+|+.+|.+|++
T Consensus        72 ~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~---~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~  148 (297)
T KOG0810|consen   72 ADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQN---RSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYRE  148 (297)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC---CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999987654322   335678999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhccCCCCChHHHHHHHhcCCchHHHHHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038457          157 EYREVVERRVITVTGTRPDEETIDHLIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMA  236 (308)
Q Consensus       157 ~~k~~~~r~~~~v~~~~~~~e~i~~~~~~~~~~~~~q~~l~~~~~~q~~~~l~~i~~R~~eI~~ie~~I~EL~~lF~dla  236 (308)
                      +|++++.|+|.++.+..++++++++++++|+++.|++.++.  ++++.++++.++++||.+|++||++|.|||+||.|||
T Consensus       149 ~~k~~i~Rql~i~~~~~~~de~ie~~ie~g~~~~f~~~~i~--~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa  226 (297)
T KOG0810|consen  149 EYKERIQRQLFIVGGEETTDEEIEEMIESGGSEVFTQKAIQ--DRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLDMA  226 (297)
T ss_pred             HHHHHHHHHHhhhCCCcCChHHHHHHHHCCChHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988877669999999999999999889888776  5667789999999999999999999999999999999


Q ss_pred             HHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhccccC
Q 038457          237 VLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQKSSRKWMCIAIIILLIIVAVIVVGVIKPWKS  305 (308)
Q Consensus       237 ~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~qkk~rk~~c~~i~iviii~~iii~~i~~~~~~  305 (308)
                      +||+.||+|||+||+||.+|.+||++|..++++|.+||+++|||+||+|++++|++++++++++.||..
T Consensus       227 ~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~v~~i~~~~~~  295 (297)
T KOG0810|consen  227 VLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVLVVVIVVPLVL  295 (297)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHHhhhhcccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999853

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information
>smart00503 SynN Syntaxin N-terminal domain Back     alignment and domain information
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ] Back     alignment and domain information
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane Back     alignment and domain information
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>smart00397 t_SNARE Helical region found in SNAREs Back     alignment and domain information
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway Back     alignment and domain information
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query308
3c98_B279 Revised Structure Of The Munc18a-Syntaxin1 Complex 1e-12
2xhe_B279 Crystal Structure Of The Unc18-Syntaxin 1 Complex F 1e-11
1jth_B77 Crystal Structure And Biophysical Properties Of A C 2e-09
1hvv_A75 Self-Association Of The H3 Region Of Syntaxin 1a: I 2e-09
3hd7_B109 Helical Extension Of The Neuronal Snare Complex Int 3e-09
1sfc_B83 Neuronal Synaptic Fusion Complex Length = 83 4e-09
1l4a_B88 X-Ray Structure Of The Neuronal ComplexinSNARE COMP 8e-09
1urq_B75 Crystal Structure Of Neuronal Q-Snares In Complex W 2e-08
2nps_B71 Crystal Structure Of The Early Endosomal Snare Comp 2e-08
1n7s_B68 High Resolution Structure Of A Truncated Neuronal S 1e-07
3rk2_B65 Truncated Snare Complex Length = 65 2e-07
1kil_B62 Three-Dimensional Structure Of The ComplexinSNARE C 3e-07
1gl2_B65 Crystal Structure Of An Endosomal Snare Core Comple 1e-04
>pdb|3C98|B Chain B, Revised Structure Of The Munc18a-Syntaxin1 Complex Length = 279 Back     alignment and structure 
Iteration: 1

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 99/196 (50%), Gaps = 16/196 (8%)
Query: 89  VDEVGKIARNVKAKIEAINRENLANRQKPGCEKGTSVDRSRMNVTNALTKRFKELMTEFQ 148
           + ++ K A  V++K+++I +   +  Q+ G  + ++  R R    + L+++F E+M+E+ 
Sbjct: 91  MSDIKKTANKVRSKLKSIEQ---SIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYN 147
Query: 149 TLXXXXXXXXXXXXXXXXXXXXGTRPDEETIDHLIETGN-----SEQIFQKAIQEQGRGQ 203
                                  T   EE ++ ++E+GN     S  I   +I +Q    
Sbjct: 148 ATQSDYRERCKGRIQRQLEITGRTTTSEE-LEDMLESGNPAIFASGIIMDSSISKQA--- 203
Query: 204 VLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSG 263
               L EI+ RH  + ++E  + +L  ++MDMA+LVE+QGE++D IE  V +AV  V+  
Sbjct: 204 ----LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERA 259
Query: 264 TTALQNAKKHQKSSRK 279
            +  + A K+Q  +R+
Sbjct: 260 VSDTKKAVKYQSKARR 275
>pdb|2XHE|B Chain B, Crystal Structure Of The Unc18-Syntaxin 1 Complex From Monosiga Brevicollis Length = 279 Back     alignment and structure
>pdb|1JTH|B Chain B, Crystal Structure And Biophysical Properties Of A Complex Between The N-Terminal Region Of Snap25 And The Snare Region Of Syntaxin 1a Length = 77 Back     alignment and structure
>pdb|1HVV|A Chain A, Self-Association Of The H3 Region Of Syntaxin 1a: Implications For Snare Complex Assembly Length = 75 Back     alignment and structure
>pdb|3HD7|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The Membrane, Spacegroup C 1 2 1 Length = 109 Back     alignment and structure
>pdb|1SFC|B Chain B, Neuronal Synaptic Fusion Complex Length = 83 Back     alignment and structure
>pdb|1L4A|B Chain B, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX From The Squid Loligo Pealei Length = 88 Back     alignment and structure
>pdb|1URQ|B Chain B, Crystal Structure Of Neuronal Q-Snares In Complex With R-Snare Motif Of Tomosyn Length = 75 Back     alignment and structure
>pdb|2NPS|B Chain B, Crystal Structure Of The Early Endosomal Snare Complex Length = 71 Back     alignment and structure
>pdb|1N7S|B Chain B, High Resolution Structure Of A Truncated Neuronal Snare Complex Length = 68 Back     alignment and structure
>pdb|3RK2|B Chain B, Truncated Snare Complex Length = 65 Back     alignment and structure
>pdb|1KIL|B Chain B, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX Length = 62 Back     alignment and structure
>pdb|1GL2|B Chain B, Crystal Structure Of An Endosomal Snare Core Complex Length = 65 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query308
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 9e-45
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 6e-44
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 3e-39
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 1e-28
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 7e-25
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 1e-22
1s94_A180 S-syntaxin; three helix bundle, structural plastic 1e-21
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 2e-20
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 6e-20
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 3e-19
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 1e-17
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 1e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-04
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 3c98_B Length = 267 Back     alignment and structure
 Score =  152 bits (384), Expect = 9e-45
 Identities = 63/250 (25%), Positives = 136/250 (54%), Gaps = 8/250 (3%)

Query: 34  SDMGMEGFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVG 93
            D  M+ F +Q++EI   +DK++  ++++K  +  S  +   +  +  K+ +E+ + ++ 
Sbjct: 26  RDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKH--SAILASPNPDEKTKEELEELMSDIK 83

Query: 94  KIARNVKAKIEAINRENLANRQKPGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLRQR 153
           K A  V++K+++I +      Q+ G  + ++  R R    + L+++F E+M+E+   +  
Sbjct: 84  KTANKVRSKLKSIEQSI---EQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSD 140

Query: 154 IQEEYREVVERRVITVTGTRPDEETIDHLIETGNSEQIFQKAIQEQGRGQVLNTLEEIQE 213
            +E  +  ++R+ + +TG     E ++ ++E+GN        I +    +    L EI+ 
Sbjct: 141 YRERCKGRIQRQ-LEITGRTTTSEELEDMLESGNPAIFASGIIMDSSISK--QALSEIET 197

Query: 214 RHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKH 273
           RH  + ++E  + +L  ++MDMA+LVE+QGE++D IE  V +AV  V+   +  + A K+
Sbjct: 198 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 257

Query: 274 QKSSRKWMCI 283
           Q  +R+   +
Sbjct: 258 QSKARRKKIM 267
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 279 Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Length = 196 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Length = 109 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Length = 77 Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 71 Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Length = 180 Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Length = 69 Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Length = 83 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Length = 68 Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65 Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Length = 127 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query308
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 100.0
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 100.0
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 100.0
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 99.96
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 99.93
3c98_B279 Syntaxin-1A; protein complex, alternative splicing 99.93
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 99.91
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 99.9
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 99.89
1s94_A180 S-syntaxin; three helix bundle, structural plastic 99.89
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 99.86
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 99.84
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 99.77
2dnx_A130 Syntaxin-12; snare, HABC domain, UP and DOWN three 99.02
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 97.53
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 97.52
1hs7_A97 Syntaxin VAM3; UP-and-DOWN three-helix bundle inse 97.33
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 96.82
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 96.73
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 96.56
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 96.52
2kog_A119 Vesicle-associated membrane protein 2; synaptobrev 96.0
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 95.92
3b5n_D64 Protein transport protein SEC9; snare complex, syn 95.83
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 95.4
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 94.04
3b5n_C70 Protein transport protein SEC9; snare complex, syn 93.86
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 89.42
4dnd_A130 Syntaxin-10, SYN10; structural genomics, protein s 83.45
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B Back     alignment and structure
Probab=100.00  E-value=7.8e-47  Score=340.98  Aligned_cols=267  Identities=24%  Similarity=0.427  Sum_probs=194.1

Q ss_pred             CcchhhhhhccccCCCCCCCcCcccCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHH
Q 038457            1 MNDLLTDSFVSDARGQPSRDNDIEMGTRVPRSSSDMGMEGFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKA   80 (308)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~   80 (308)
                      |.|+|.+.. ++..  .+...|++.     .++++++|+.||+.|++|+..|..|..++.+|+.+|+..++.+++.  +.
T Consensus         1 m~drl~~~~-~~~~--~~~~~~~~~-----~~~~~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~--~~   70 (267)
T 1dn1_B            1 MKDRTQELR-TAKD--SDDDDDVTV-----TVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPD--EK   70 (267)
T ss_dssp             ----------------------------------CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC--SH
T ss_pred             CCchHHHHh-cccC--CCCccceec-----ccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc--HH
Confidence            889999876 3322  112333333     3566789999999999999999999999999999999887765543  36


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038457           81 IKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQKPGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLRQRIQEEYRE  160 (308)
Q Consensus        81 l~~~i~~~~~~i~~~~~~ik~~l~~l~~~~~~~~~~~~~~~~~~~~r~r~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~  160 (308)
                      ++.+|+.++.+|+++++.|+..|+.|+..+...   +++++++++.|+|++|+.+|+++|+++|.+|+.+|..|++.++.
T Consensus        71 ~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~---~~~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~  147 (267)
T 1dn1_B           71 TKEELEELMSDIKKTANKVRSKLKSIEQSIEQE---EGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKG  147 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999999875421   12233467789999999999999999999999999999999999


Q ss_pred             HHHHHhhhccCCCCChHHHHHHHhcCCchHHHHHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038457          161 VVERRVITVTGTRPDEETIDHLIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVE  240 (308)
Q Consensus       161 ~~~r~~~~v~~~~~~~e~i~~~~~~~~~~~~~q~~l~~~~~~q~~~~l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~  240 (308)
                      ++.|+| .+.||++++++++.++++|++..|.+..+..  .++++.++.++++||++|.+||++|.|||+||.|||.||+
T Consensus       148 ~i~Rq~-~i~~~~~tdeeie~~ie~g~~~~f~q~~l~~--~~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~  224 (267)
T 1dn1_B          148 RIQRQL-EITGRTTTSEELEDMLESGNPAIFASGIIMD--SSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVE  224 (267)
T ss_dssp             HHHHHH-HHTTCCCCHHHHHHHHHTCSSCTTTTTCCCC--SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHhHh-hccCCCCCHHHHHHHHhCCcHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998864 5678999999999999998875443322221  2345678999999999999999999999999999999999


Q ss_pred             HhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHH
Q 038457          241 AQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQKSSRKWMCI  283 (308)
Q Consensus       241 ~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~qkk~rk~~c~  283 (308)
                      +||++||+||+||+.|.+||+.|..+|.+|.+||+++|||+||
T Consensus       225 ~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~rkk~~~  267 (267)
T 1dn1_B          225 SQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM  267 (267)
T ss_dssp             HHCSGGGCHHHHHHTCCCCCCCCC-------------------
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            9999999999999999999999999999999999999999986
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Back     alignment and structure
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Back     alignment and structure
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Back     alignment and structure
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 308
d1fioa_196 a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces c 3e-28
d1ez3a_124 a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat ( 6e-22
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196 Back     information, alignment and structure

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  105 bits (263), Expect = 3e-28
 Identities = 37/205 (18%), Positives = 89/205 (43%), Gaps = 13/205 (6%)

Query: 38  MEGFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIAR 97
             GF  +I +I + +DK    + ++   ++   +     +   ++  ++  V +   +  
Sbjct: 4   FVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQF 63

Query: 98  NVKAKIEAINRENLANRQKPGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLRQRIQEE 157
            +K +I++  R+                D ++        +RF +L+ +++ +    +EE
Sbjct: 64  KLKNEIKSAQRDG-------------IHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEE 110

Query: 158 YREVVERRVITVTGTRPDEETIDHLIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDA 217
            +E  +R+ + +     ++E    + + G  +   Q  +    RG+    L E+Q RH  
Sbjct: 111 NKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGEAKTALAEVQARHQE 170

Query: 218 VKEIEKKLLDLQQIYMDMAVLVEAQ 242
           + ++EK + +L Q++ DM  LV  Q
Sbjct: 171 LLKLEKSMAELTQLFNDMEELVIEQ 195
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query308
d1fioa_196 Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.94
d1ez3a_124 Syntaxin 1A N-terminal domain {Rat (Rattus norvegi 99.78
d1hs7a_97 Vam3p N-terminal domain {Baker's yeast (Saccharomy 92.05
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.7e-25  Score=189.66  Aligned_cols=193  Identities=21%  Similarity=0.412  Sum_probs=162.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHhhccC
Q 038457           37 GMEGFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQK  116 (308)
Q Consensus        37 ~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l~~~~~~~~~~  116 (308)
                      .+..||+.|++|+..|..|+..+..|..++...+..+++.+...++.+++.++.+++.+++.|+..++.++..       
T Consensus         3 d~~~f~~~v~~I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~-------   75 (196)
T d1fioa_           3 DFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRD-------   75 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------
Confidence            4789999999999999999999999999999988888888888999999999999999999999999887653       


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChHHHHHHHhcCCchHHHHHH-
Q 038457          117 PGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLRQRIQEEYREVVERRVITVTGTRPDEETIDHLIETGNSEQIFQKA-  195 (308)
Q Consensus       117 ~~~~~~~~~~r~r~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~~~r~~~~v~~~~~~~e~i~~~~~~~~~~~~~q~~-  195 (308)
                            .++.+++++++..|+++|.+++..|+.+|..|.+.++.++.|++. +.+|.+++++++..+..++....+... 
T Consensus        76 ------~~~~~~~~~~~~~l~~~l~~~~~~f~~~q~~~~~~~k~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (196)
T d1fioa_          76 ------GIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYM-IIQPEATEDEVEAAISDVGGQQIFSQAL  148 (196)
T ss_dssp             ------TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCTTCCHHHHHHHTSHHHHHHHHHHHT
T ss_pred             ------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccCCCccchhhhHhhccccchHHHHHHH
Confidence                  134688999999999999999999999999999999999988754 455788888888776554433333332 


Q ss_pred             HHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038457          196 IQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQG  243 (308)
Q Consensus       196 l~~~~~~q~~~~l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qg  243 (308)
                      +......+....+.++++|+++|.+||++|.|||+||.|||.||++|.
T Consensus       149 ~~~~~~~~~~~~~~~i~eR~~eI~~Ie~sI~eL~~iF~dLa~LV~eQ~  196 (196)
T d1fioa_         149 LNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ  196 (196)
T ss_dssp             C------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccC
Confidence            222333455678899999999999999999999999999999999883
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hs7a_ a.47.2.1 (A:) Vam3p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure