Citrus Sinensis ID: 038464

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400----
MELADCSSSSRKRKSSSLSFSMEELNQDLLERVLSWLPTSTFFRLSSVCKRWKSVADSPSFKLACSQIPSRDPWFLMVDHQLNHSIVFDSAEKTWKELNFPNSSPDSIPVAASGGLVCFRTASGKFIVSNPVTGSSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGELPKLSFKVYNSCLNCWEEETLLLSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQRSPSKQYSSVITSKDGEEIVYFLNSCGTIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGELLVVVLSEFLESASLRVWRFDQDNGFWHQIAAMPPAMSHEFYGKKVDINCVAAGHQIFICFNSAELFSYVLCDLVTNEWVELPKCSMNGEAVVFMSAFSFEPRIEASV
ccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHccccHHHHHHHcccHHHHHHHcccccccEEEEEEcccccEEEEEcccccEEEccccccccccEEEEccccEEEEEcccccEEEEccccccEEEccccccccccccEEEEEEEccccccccEEEEEEEEEccccEEEEEEccccEEEEccccccccccccEEEcccEEEcccccEEEEEccccEEEEccccccccccccEEEcccccEEEEEEccccEEEEEccccccEEEEcccccccccccEEEEEEccEEEEEEEEccccccEEEEEEEEcccccEEEEEEcccHHHHHcccccccEEEEEEccEEEEEEEEcccEEEEEEEcccccEEEccccccccccEEEEEEEEEEEEccccc
cccccccccccccccccccHHHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccEEEEEEccccccEEEcccccccccccccccccccEEEEEcccEEEEEccccEEEEEccccHHHccccccccccccccEEEEEEEccccccEEEEEEEEEcccccccEEEEEcccccccccccccccccccccccccccEEEcccEEEEEEccccEEcccccccccEEEEEEEEcccccEEEEEcccccEEEEEEcccccEcccccccccccccccHHEEcccEEEEEEEEEcccccEEEEEEEcccccEEEEHHcccHHHHHHHHcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEccccccccccccEEEEEEEcccccccc
meladcssssrkrksssLSFSMEELNQDLLERVLswlptstfFRLSSVCKRwksvadspsfklacsqipsrdpwflMVDHQLNHSIVFDSAEKTwkelnfpnsspdsipvaasgglvcfrtasgkfivsnpvtgssrelppldadtenqSLHAIVMTtssknpsnykLVLVYGELPKLSFKVYNSCLNCWEEETLLLSRKSeqalevdsidhhddedAVYFLSKAGNvvatnmqrspskqyssvitskDGEEIVYFLNSCGTIVACnltqksfteyprllpvfseysIDVVECRGELLVVVLSEFLESASLRVWRfdqdngfwhqiaamppamshefygkkvdincVAAGHQIFICFNSAELFSYVLCDLVtnewvelpkcsmngeAVVFMSafsfeprieasv
meladcssssrkrkssslsFSMEELNQDLLERVLSWLPTSTFFRLSSVCKRWKSVADSPSFKLACSQIPSRDPWFLMVDHQLNHSIVFDSAEKTWKELNFPNSSPDSIPVAASGGLVCFRTASGKfivsnpvtgssrelppldADTENQSLHAIVmttssknpsnyKLVLVYGELPKLSFKVYNSCLNCWEEETLLLSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVVatnmqrspskqyssvITSKDGEEIVYFLNSCGTIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGELLVVVLSEFLESASLRVWRFDQDNGFWHQIAAMPPAMSHEFYGKKVDINCVAAGHQIFICFNSAELFSYVLCDLVTNEWVELPKCSMNGEAVVFMSAFSFEPRIEASV
MELADCssssrkrkssslsfsMEELNQDLLERVLSWLPTSTFFRLSSVCKRWKSVADSPSFKLACSQIPSRDPWFLMVDHQLNHSIVFDSAEKTWKELNFPNSSPDSIPVAASGGLVCFRTASGKFIVSNPVTGSSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGELPKLSFKVYNSCLNCWEEETLLLSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQRSPSKQYSSVITSKDGEEIVYFLNSCGTIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGellvvvlseflesaslRVWRFDQDNGFWHQIAAMPPAMSHEFYGKKVDINCVAAGHQIFICFNSAELFSYVLCDLVTNEWVELPKCSMNGEAVVFMSAFSFEPRIEASV
***************************DLLERVLSWLPTSTFFRLSSVCKRWKSVADSPSFKLACSQIPSRDPWFLMVDHQLNHSIVFDSAEKTWKELNF*******IPVAASGGLVCFRTASGKFIVS***********************************NYKLVLVYGELPKLSFKVYNSCLNCWEEETLLLSR*******V*SIDHHDDEDAVYFLSKAGNVVA**************IT*KDGEEIVYFLNSCGTIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGELLVVVLSEFLESASLRVWRFDQDNGFWHQIAAMPPAMSHEFYGKKVDINCVAAGHQIFICFNSAELFSYVLCDLVTNEWVELPKCSMNGEAVVFMSAFSF********
**************************QDLLERVLSWLPTSTFFRLSSVCKRWKSVADSPSFKLACSQIPSRDPWFLMVDHQLNHSIVFDSAEKTWKELNFPNSSPDSIPVAASGGLVCFRTASGKFIVSNPVTGSSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGELPKLSFKVYNSCLNCWEEETLLLSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQRSPSKQYSSVITSKDGEEIVYFLNSCGTIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGELLVVVLSEFLESASLRVWRFDQDNGFWHQIAAMPPAMSHEFYGKKVDINCVAAGHQIFICFNSAELFSYVLCDLVTNEWVELPKCSMNGEAVVFMSAFSFEPRIEAS*
*******************FSMEELNQDLLERVLSWLPTSTFFRLSSVCKRWKSVADSPSFKLACSQIPSRDPWFLMVDHQLNHSIVFDSAEKTWKELNFPNSSPDSIPVAASGGLVCFRTASGKFIVSNPVTGSSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGELPKLSFKVYNSCLNCWEEETLLLSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNM**********VITSKDGEEIVYFLNSCGTIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGELLVVVLSEFLESASLRVWRFDQDNGFWHQIAAMPPAMSHEFYGKKVDINCVAAGHQIFICFNSAELFSYVLCDLVTNEWVELPKCSMNGEAVVFMSAFSFEPRIEASV
*****************LSFSMEELNQDLLERVLSWLPTSTFFRLSSVCKRWKSVADSPSFKLACSQIPSRDPWFLMVDHQLNHSIVFDSAEKTWKELNFPNSSPDSIPVAASGGLVCFRTASGKFIVSNPVTGSSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGELPKLSFKVYNSCLNCWEEETLLLSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQRSPSKQYSSVITSKDGEEIVYFLNSCGTIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGELLVVVLSEFLESASLRVWRFDQDNGFWHQIAAMPPAMSHEFYGKKVDINCVAAGHQIFICFNSAELFSYVLCDLVTNEWVELPKCSMNGEAVVFMSAFSFEPRIEASV
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MELADCSSSSRKRKSSSLSFSMEELNQDLLERVLSWLPTSTFFRLSSVCKRWKSVADSPSFKLACSQIPSRDPWFLMVDHQLNHSIVFDSAEKTWKELNFPNSSPDSIPVAASGGLVCFRTASGKFIVSNPVTGSSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGELPKLSFKVYNSCLNCWEEETLLLSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQRSPSKQYSSVITSKDGEEIVYFLNSCGTIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGELLVVVLSEFLESASLRVWRFDQDNGFWHQIAAMPPAMSHEFYGKKVDINCVAAGHQIFICFNSAELFSYVLCDLVTNEWVELPKCSMNGEAVVFMSAFSFEPRIEASV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query404 2.2.26 [Sep-21-2011]
Q9SMZ3457 F-box only protein 13 OS= yes no 0.943 0.833 0.576 1e-121
Q9FZK1467 F-box only protein 6 OS=A no no 0.792 0.685 0.266 5e-28
Q9LFV5448 F-box/kelch-repeat protei no no 0.819 0.738 0.238 2e-13
Q9M310411 F-box/kelch-repeat protei no no 0.339 0.333 0.354 6e-12
Q39090442 Protein UNUSUAL FLORAL OR no no 0.336 0.307 0.297 3e-07
Q9SFC7417 F-box protein At3g07870 O no no 0.321 0.311 0.294 0.0001
Q9LMR4410 Putative F-box/kelch-repe no no 0.554 0.546 0.239 0.0003
Q9ZNQ3347 F-box/LRR-repeat/kelch-re no no 0.344 0.400 0.265 0.0004
Q9LUP1381 Putative F-box/kelch-repe no no 0.415 0.440 0.241 0.0005
Q9LPW2416 Putative F-box/kelch-repe no no 0.403 0.391 0.252 0.0005
>sp|Q9SMZ3|FBX13_ARATH F-box only protein 13 OS=Arabidopsis thaliana GN=FBX13 PE=2 SV=2 Back     alignment and function desciption
 Score =  434 bits (1116), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/397 (57%), Positives = 290/397 (73%), Gaps = 16/397 (4%)

Query: 20  FSMEELNQDLLERVLSWLPTSTFFRLSSVCKRWKSVADSPSFKLACSQIPSRDPWFLMVD 79
           F M++LN D+LERVLSWLPTS FFR+SSVCKRWKS   S SFKLACSQIP+RDPWF M+D
Sbjct: 65  FPMDDLNDDVLERVLSWLPTSCFFRMSSVCKRWKSSQTSKSFKLACSQIPTRDPWFFMID 124

Query: 80  HQLNHS-IVFDSAEKTWKELN----FPNSSPDSIPVAASGGLVCFR-TASGKFIVSNPVT 133
           +  N S  VFDS E +WK LN      +   D IPVA+SGGL+C+R + SG F++ NP+T
Sbjct: 125 NDSNSSSFVFDSTENSWKNLNRRDFLHHHRQDFIPVASSGGLLCYRCSISGDFLLRNPLT 184

Query: 134 GSSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGELPKLSFKVYNSCLNCWEEE 193
           GSSR++P  D +  N+ L A+ MTT++  PS+Y LV + GE+P LSFK+Y S  + W ++
Sbjct: 185 GSSRDIPSQD-NNNNKPLQAVAMTTTTVTPSSYTLVTISGEIPNLSFKIYESNADSWSKD 243

Query: 194 TLLLSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVV--ATNMQRSPSKQYSSVITSKDGE 251
             L S K+  +   D  D+  D   VYFLSK GNVV  + N+QRSPSKQYSSVIT  D  
Sbjct: 244 QELESVKNNDSSLHD--DYDTDSGTVYFLSKQGNVVVASNNLQRSPSKQYSSVITVTDEA 301

Query: 252 EIVYFLNSCGTIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGELLVVVLSEFLESASL 311
           EIVYFL+S GTIVAC+LT++ FTE P+LLP F EYSID+VEC G + V++LSEF ESASL
Sbjct: 302 EIVYFLSSYGTIVACDLTKRCFTELPKLLPPFLEYSIDLVECEGTMYVILLSEFFESASL 361

Query: 312 RVWRFDQDNGFWHQIAAMPPAMSHEFYGKKVDINCV-AAGHQIFICFNSA--ELF-SYVL 367
           R+WR D +N  W Q+  +PPA+SHE YGKK DINCV  AG++I +CFN++  E++  Y +
Sbjct: 362 RIWRLD-NNREWVQVGMLPPALSHELYGKKGDINCVGGAGNKILVCFNASPPEVYCRYFV 420

Query: 368 CDLVTNEWVELPKCSMNGEAVVFMSAFSFEPRIEASV 404
            DLV  EW ELPKC  +GEAV F+SA SF+PRIEA+V
Sbjct: 421 YDLVAEEWNELPKCFKDGEAVDFVSALSFQPRIEATV 457

Arabidopsis thaliana (taxid: 3702)
>sp|Q9FZK1|FBX6_ARATH F-box only protein 6 OS=Arabidopsis thaliana GN=FBX6 PE=2 SV=1 Back     alignment and function description
>sp|Q9LFV5|FK111_ARATH F-box/kelch-repeat protein At5g15710 OS=Arabidopsis thaliana GN=At5g15710 PE=2 SV=1 Back     alignment and function description
>sp|Q9M310|FBK77_ARATH F-box/kelch-repeat protein At3g61590 OS=Arabidopsis thaliana GN=At3g61590 PE=1 SV=1 Back     alignment and function description
>sp|Q39090|UFO_ARATH Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis thaliana GN=UFO PE=1 SV=2 Back     alignment and function description
>sp|Q9SFC7|FB135_ARATH F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1 Back     alignment and function description
>sp|Q9LMR4|FBK4_ARATH Putative F-box/kelch-repeat protein At1g15680 OS=Arabidopsis thaliana GN=At1g15680 PE=4 SV=1 Back     alignment and function description
>sp|Q9ZNQ3|FBLK3_ARATH F-box/LRR-repeat/kelch-repeat protein At2g27520 OS=Arabidopsis thaliana GN=At2g27520 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUP1|FBK61_ARATH Putative F-box/kelch-repeat protein At3g17570 OS=Arabidopsis thaliana GN=At3g17570 PE=4 SV=1 Back     alignment and function description
>sp|Q9LPW2|FBK2_ARATH Putative F-box/kelch-repeat protein At1g12870 OS=Arabidopsis thaliana GN=At1g12870 PE=4 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query404
255550247412 ubiquitin-protein ligase, putative [Rici 0.965 0.946 0.709 1e-161
224088629409 f-box family protein [Populus trichocarp 0.967 0.955 0.710 1e-161
225429902472 PREDICTED: F-box only protein 13-like [V 0.967 0.828 0.689 1e-156
449447201414 PREDICTED: F-box only protein 13-like [C 0.985 0.961 0.664 1e-156
356507137413 PREDICTED: F-box only protein 13-like [G 0.945 0.924 0.687 1e-155
356514800413 PREDICTED: F-box only protein 13-like [G 0.945 0.924 0.675 1e-153
356552439407 PREDICTED: F-box only protein 13-like [G 0.948 0.941 0.680 1e-150
358249252407 uncharacterized protein LOC100801096 [Gl 0.945 0.938 0.671 1e-150
296081828397 unnamed protein product [Vitis vinifera] 0.856 0.871 0.616 1e-131
186515828457 F-box only protein 13 [Arabidopsis thali 0.943 0.833 0.576 1e-119
>gi|255550247|ref|XP_002516174.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223544660|gb|EEF46176.1| ubiquitin-protein ligase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 288/406 (70%), Positives = 327/406 (80%), Gaps = 16/406 (3%)

Query: 10  SRKRKSSS-----LSFSMEELNQDLLERVLSWLPTSTFFRLSSVCKRWKSVADSPSFKLA 64
           SRKRKS       +S  ++ELNQDLLERVLSWLPTSTFFRL SVCKRWKSVADS SFK A
Sbjct: 12  SRKRKSQEEDHDMVSICLDELNQDLLERVLSWLPTSTFFRLRSVCKRWKSVADSTSFKFA 71

Query: 65  CSQIPSRDPWFLMVDHQLNHSIVFDSAEKTWKELNFP------NSSPDSIPVAASGGLVC 118
           CS++PSRDPWF MVD  LN   VFDSAE++WK+LN P      +S+ DS+PVAASGGLVC
Sbjct: 72  CSEVPSRDPWFFMVDPNLNKWTVFDSAERSWKKLNHPAFLQHSSSNCDSMPVAASGGLVC 131

Query: 119 FRTASGKFIVSNPVTGSSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGELPKL 178
           FR  SG  IV NPVTGS R +PP   ++ +QSLHAI MTT  KN  +YKLVLV GELPKL
Sbjct: 132 FRKQSGALIVCNPVTGSCRGVPPAHLESGSQSLHAIAMTTYMKNQQSYKLVLVSGELPKL 191

Query: 179 SFKVYNSCLNCWEEETLLLSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQRSPS 238
           S ++YNS  NCW+EE +LL RK +++ E D+ D    ++AVYFLSKAGNVVAT+MQRSPS
Sbjct: 192 SCRMYNSSANCWDEE-ILLKRKVDESQEFDAAD----DNAVYFLSKAGNVVATDMQRSPS 246

Query: 239 KQYSSVITSKDGEEIVYFLNSCGTIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGELL 298
           KQYSSV+T K+GEE  YFL+S GTIVACNLT K F EYPRLLPVF EYSID+VECRGE+L
Sbjct: 247 KQYSSVMTVKNGEETAYFLSSSGTIVACNLTGKCFFEYPRLLPVFYEYSIDIVECRGEML 306

Query: 299 VVVLSEFLESASLRVWRFDQDNGFWHQIAAMPPAMSHEFYGKKVDINCVAAGHQIFICFN 358
           VV+LSEF  SASLR+WRF +D   W QIAAMPPAMSHEFYGKKVDINCV AG QIFIC N
Sbjct: 307 VVLLSEFFGSASLRIWRFSEDIRSWQQIAAMPPAMSHEFYGKKVDINCVGAGDQIFICLN 366

Query: 359 SAELFSYVLCDLVTNEWVELPKCSMNGEAVVFMSAFSFEPRIEASV 404
           SAE FSY++C+L  N+WVELPKC MNGEAV FMSAFSFEPRIEASV
Sbjct: 367 SAEFFSYIMCNLRNNDWVELPKCFMNGEAVEFMSAFSFEPRIEASV 412

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224088629|ref|XP_002308504.1| f-box family protein [Populus trichocarpa] gi|222854480|gb|EEE92027.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225429902|ref|XP_002281088.1| PREDICTED: F-box only protein 13-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449447201|ref|XP_004141357.1| PREDICTED: F-box only protein 13-like [Cucumis sativus] gi|449524430|ref|XP_004169226.1| PREDICTED: F-box only protein 13-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356507137|ref|XP_003522327.1| PREDICTED: F-box only protein 13-like [Glycine max] Back     alignment and taxonomy information
>gi|356514800|ref|XP_003526091.1| PREDICTED: F-box only protein 13-like [Glycine max] Back     alignment and taxonomy information
>gi|356552439|ref|XP_003544575.1| PREDICTED: F-box only protein 13-like [Glycine max] Back     alignment and taxonomy information
>gi|358249252|ref|NP_001240018.1| uncharacterized protein LOC100801096 [Glycine max] gi|255638928|gb|ACU19766.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|296081828|emb|CBI20833.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|186515828|ref|NP_567915.3| F-box only protein 13 [Arabidopsis thaliana] gi|334302802|sp|Q9SMZ3.2|FBX13_ARATH RecName: Full=F-box only protein 13 gi|332660785|gb|AEE86185.1| F-box only protein 13 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query404
TAIR|locus:2125889457 AT4G33160 "AT4G33160" [Arabido 0.938 0.829 0.551 2.4e-108
TAIR|locus:2015974467 LCR "AT1G27340" [Arabidopsis t 0.403 0.349 0.369 2e-29
TAIR|locus:2143256448 AT5G15710 "AT5G15710" [Arabido 0.396 0.357 0.312 6.7e-15
TAIR|locus:2082797411 HWS "HAWAIIAN SKIRT" [Arabidop 0.423 0.416 0.305 3.1e-13
TAIR|locus:2015766442 UFO "AT1G30950" [Arabidopsis t 0.183 0.167 0.270 1.9e-11
TAIR|locus:2169253403 AT5G43190 "AT5G43190" [Arabido 0.274 0.275 0.322 1.2e-07
TAIR|locus:2077452417 AT3G07870 "AT3G07870" [Arabido 0.321 0.311 0.294 1.1e-05
TAIR|locus:2087323383 AT3G24760 "AT3G24760" [Arabido 0.386 0.407 0.320 1.9e-05
TAIR|locus:2038618347 AT2G27520 "AT2G27520" [Arabido 0.386 0.449 0.273 0.00021
TAIR|locus:2090482381 AT3G17570 "AT3G17570" [Arabido 0.408 0.433 0.259 0.00042
TAIR|locus:2125889 AT4G33160 "AT4G33160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1071 (382.1 bits), Expect = 2.4e-108, P = 2.4e-108
 Identities = 218/395 (55%), Positives = 276/395 (69%)

Query:    22 MEELNQDLLERVLSWLPTSTFFRLSSVCKRWKSVADSPSFKLACSQIPSRDPWFLMVDHQ 81
             M++LN D+LERVLSWLPTS FFR+SSVCKRWKS   S SFKLACSQIP+RDPWF M+D+ 
Sbjct:    67 MDDLNDDVLERVLSWLPTSCFFRMSSVCKRWKSSQTSKSFKLACSQIPTRDPWFFMIDND 126

Query:    82 LNHS-IVFDSAEKTWKELN----FPNSSPDSIPVAASGGLVCFRTA-SGKFIVSNPVTGS 135
              N S  VFDS E +WK LN      +   D IPVA+SGGL+C+R + SG F++ NP+TGS
Sbjct:   127 SNSSSFVFDSTENSWKNLNRRDFLHHHRQDFIPVASSGGLLCYRCSISGDFLLRNPLTGS 186

Query:   136 SRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGELPKLSFKVYNSCLNCWEEETL 195
             SR++P  D +  N+ L A+ MTT++  PS+Y LV + GE+P LSFK+Y S  + W ++  
Sbjct:   187 SRDIPSQD-NNNNKPLQAVAMTTTTVTPSSYTLVTISGEIPNLSFKIYESNADSWSKDQE 245

Query:   196 LLSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVV--ATNMQRSPSKQYSSVITSKDGEEI 253
             L S K+  +   D  D+  D   VYFLSK GNVV  + N+QRSPSKQYSSVIT  D  EI
Sbjct:   246 LESVKNNDSSLHD--DYDTDSGTVYFLSKQGNVVVASNNLQRSPSKQYSSVITVTDEAEI 303

Query:   254 VYFLNSCGTIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGXXXXXXXXXXXXXXXXRV 313
             VYFL+S GTIVAC+LT++ FTE P+LLP F EYSID+VEC G                R+
Sbjct:   304 VYFLSSYGTIVACDLTKRCFTELPKLLPPFLEYSIDLVECEGTMYVILLSEFFESASLRI 363

Query:   314 WRFDQDNGFWHQIAAMPPAMSHEFYGKKVDINCVA-AGHQIFICFNSA--ELFS-YVLCD 369
             WR D +N  W Q+  +PPA+SHE YGKK DINCV  AG++I +CFN++  E++  Y + D
Sbjct:   364 WRLD-NNREWVQVGMLPPALSHELYGKKGDINCVGGAGNKILVCFNASPPEVYCRYFVYD 422

Query:   370 LVTNEWVELPKCSMNGEAVVFMSAFSFEPRIEASV 404
             LV  EW ELPKC  +GEAV F+SA SF+PRIEA+V
Sbjct:   423 LVAEEWNELPKCFKDGEAVDFVSALSFQPRIEATV 457
GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS
TAIR|locus:2015974 LCR "AT1G27340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143256 AT5G15710 "AT5G15710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082797 HWS "HAWAIIAN SKIRT" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015766 UFO "AT1G30950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169253 AT5G43190 "AT5G43190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077452 AT3G07870 "AT3G07870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087323 AT3G24760 "AT3G24760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2038618 AT2G27520 "AT2G27520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090482 AT3G17570 "AT3G17570" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SMZ3FBX13_ARATHNo assigned EC number0.57680.94300.8336yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_VI000630
f-box family protein (381 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query404
pfam0064648 pfam00646, F-box, F-box domain 1e-07
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 7e-06
pfam1293747 pfam12937, F-box-like, F-box-like 5e-05
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information 
 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 19/43 (44%), Positives = 24/43 (55%)

Query: 20 FSMEELNQDLLERVLSWLPTSTFFRLSSVCKRWKSVADSPSFK 62
          FS+ +L  DLL  +LS L      RLS V KRW+S+ DS    
Sbjct: 1  FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLW 43

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 404
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 99.92
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.92
PHA02713557 hypothetical protein; Provisional 99.92
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.84
PHA03098534 kelch-like protein; Provisional 99.83
PHA02790480 Kelch-like protein; Provisional 99.82
PHA02713557 hypothetical protein; Provisional 99.82
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 99.81
PLN02153341 epithiospecifier protein 99.8
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 99.78
PLN02193470 nitrile-specifier protein 99.76
PHA02790480 Kelch-like protein; Provisional 99.76
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 99.76
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 99.72
PLN02153341 epithiospecifier protein 99.72
PHA03098534 kelch-like protein; Provisional 99.69
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 99.69
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 99.69
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 99.68
PLN02193470 nitrile-specifier protein 99.63
KOG4693392 consensus Uncharacterized conserved protein, conta 99.39
KOG4693392 consensus Uncharacterized conserved protein, conta 99.17
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 99.06
KOG0379482 consensus Kelch repeat-containing proteins [Genera 99.03
PF08268129 FBA_3: F-box associated domain; InterPro: IPR01318 99.02
KOG1230 521 consensus Protein containing repeated kelch motifs 98.97
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.82
PF07734164 FBA_1: F-box associated; InterPro: IPR006527 This 98.73
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.72
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.58
KOG0281499 consensus Beta-TrCP (transducin repeats containing 98.36
KOG1230 521 consensus Protein containing repeated kelch motifs 98.08
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 98.08
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 97.94
COG3055381 Uncharacterized protein conserved in bacteria [Fun 97.9
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.67
PF1396450 Kelch_6: Kelch motif 97.6
PF1396450 Kelch_6: Kelch motif 97.56
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 97.52
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 97.37
COG3055381 Uncharacterized protein conserved in bacteria [Fun 97.33
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 96.92
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 96.83
PF07893 342 DUF1668: Protein of unknown function (DUF1668); In 96.34
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 96.17
KOG2997366 consensus F-box protein FBX9 [General function pre 96.1
PF1341549 Kelch_3: Galactose oxidase, central domain 95.8
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 95.74
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 95.67
PF1341549 Kelch_3: Galactose oxidase, central domain 95.64
smart0061247 Kelch Kelch domain. 95.62
PF07250243 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP 95.61
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 95.61
PF07250243 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP 95.43
smart0061247 Kelch Kelch domain. 95.35
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 95.29
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 93.59
KOG2437 723 consensus Muskelin [Signal transduction mechanisms 93.35
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 92.83
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 92.64
PLN02772 398 guanylate kinase 89.38
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 88.03
KOG2437 723 consensus Muskelin [Signal transduction mechanisms 87.76
KOG0293519 consensus WD40 repeat-containing protein [Function 87.26
PF1385442 Kelch_5: Kelch motif 85.12
PLN02772398 guanylate kinase 84.04
smart00284255 OLF Olfactomedin-like domains. 83.56
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 82.44
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 81.79
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information 
Probab=99.92  E-value=1.3e-23  Score=185.70  Aligned_cols=222  Identities=18%  Similarity=0.315  Sum_probs=151.9

Q ss_pred             EEecCceEEEEeCCCeEEEEcCCCCCeeeCCCCCCCCCCCceeEEEEEecCCCCCceEEEEEecc---cCceEEEEEeCC
Q 038464          110 VAASGGLVCFRTASGKFIVSNPVTGSSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGE---LPKLSFKVYNSC  186 (404)
Q Consensus       110 ~~s~~Glv~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~g~~~~~~~~kv~~~~g~---~~~~~~~vy~~~  186 (404)
                      +++||||+|+... ..++||||.|++|+.||+++.+....... ...+|+|+.+++|||+.+...   .....+++|+++
T Consensus         1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~~~~-~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~   78 (230)
T TIGR01640         1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNKESD-TYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLG   78 (230)
T ss_pred             CcccceEEEEecC-CcEEEECCCCCCEEecCCCCCcccccccc-eEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeC
Confidence            3689999988754 78999999999999999876321111111 346799998899999998643   123589999999


Q ss_pred             CCceeecccccccccccccccccCCccccCCeEEEeecCCceeeecccCCCcccccceeeecCCceEEEEeccCCeEEEE
Q 038464          187 LNCWEEETLLLSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQRSPSKQYSSVITSKDGEEIVYFLNSCGTIVAC  266 (404)
Q Consensus       187 ~~~W~~~~~~~p~~~~~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~i~~f  266 (404)
                      +++|+.+.. .+....    . ...+|++||.+||+......          .           .        ...|++|
T Consensus        79 ~~~Wr~~~~-~~~~~~----~-~~~~v~~~G~lyw~~~~~~~----------~-----------~--------~~~IvsF  123 (230)
T TIGR01640        79 SNSWRTIEC-SPPHHP----L-KSRGVCINGVLYYLAYTLKT----------N-----------P--------DYFIVSF  123 (230)
T ss_pred             CCCcccccc-CCCCcc----c-cCCeEEECCEEEEEEEECCC----------C-----------C--------cEEEEEE
Confidence            999999875 222100    0 11378999999999753100          0           0        0159999


Q ss_pred             ecCCCceee-ccccCCccc---cccceeEeeCCeEEEEEeeeccceeeEEEEEEeC-CCCCeEEeccCChhHHHHhccCc
Q 038464          267 NLTQKSFTE-YPRLLPVFS---EYSIDVVECRGELLVVVLSEFLESASLRVWRFDQ-DNGFWHQIAAMPPAMSHEFYGKK  341 (404)
Q Consensus       267 D~~~~~w~~-i~~~~p~~~---~~~~~lv~~~g~L~~v~~~~~~~~~~~~vw~l~~-~~~~W~~v~~~~~~~~~~~~~~~  341 (404)
                      |+++|+|.. ++  +|...   .....|++++|+|+++.....  ...++||+|++ +...|+|..+++......+... 
T Consensus       124 Dl~~E~f~~~i~--~P~~~~~~~~~~~L~~~~G~L~~v~~~~~--~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~-  198 (230)
T TIGR01640       124 DVSSERFKEFIP--LPCGNSDSVDYLSLINYKGKLAVLKQKKD--TNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDD-  198 (230)
T ss_pred             EcccceEeeeee--cCccccccccceEEEEECCEEEEEEecCC--CCcEEEEEECCCCCCceeEEEEEcCcchhhhhhh-
Confidence            999999995 64  34321   123579999999999876431  24599999986 4567999998874322223221 


Q ss_pred             ceEEEEecCCEEEEEEecCCCceEEEEECCCC
Q 038464          342 VDINCVAAGHQIFICFNSAELFSYVLCDLVTN  373 (404)
Q Consensus       342 ~~~~~~~~~~~i~v~~~~~~~~~~~~yd~~~~  373 (404)
                      ..+.++..++.|+++........++.||++++
T Consensus       199 ~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~~  230 (230)
T TIGR01640       199 NFLSGFTDKGEIVLCCEDENPFYIFYYNVGEN  230 (230)
T ss_pred             eeEeEEeeCCEEEEEeCCCCceEEEEEeccCC
Confidence            34566778899987655321234999999875

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>PF13415 Kelch_3: Galactose oxidase, central domain Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>PF13415 Kelch_3: Galactose oxidase, central domain Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>KOG2437 consensus Muskelin [Signal transduction mechanisms] Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PLN02772 guanylate kinase Back     alignment and domain information
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information
>KOG2437 consensus Muskelin [Signal transduction mechanisms] Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF13854 Kelch_5: Kelch motif Back     alignment and domain information
>PLN02772 guanylate kinase Back     alignment and domain information
>smart00284 OLF Olfactomedin-like domains Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query404
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 3e-06
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 9e-06
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 9e-04
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure
 Score = 43.0 bits (102), Expect = 3e-06
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 12 KRKSSSLSFSMEELNQDLLERVLSWLPTSTFFRLSSVCKRWKSVADSPSF 61
          +     +S+    L  +LL  + S L      ++S VCKRW  +A   S 
Sbjct: 1  RENFPGVSWD--SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query404
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.91
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.9
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.9
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.9
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.89
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.89
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 99.82
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.81
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 99.81
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.8
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.8
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.79
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.76
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.76
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 99.66
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 99.65
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 99.61
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 99.53
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 99.06
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 98.89
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.73
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.65
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.53
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 97.75
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 97.49
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 96.74
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 95.33
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 95.05
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 94.74
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 94.47
3jrp_A 379 Fusion protein of protein transport protein SEC13 94.37
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 94.36
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 93.73
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 93.42
3jro_A 753 Fusion protein of protein transport protein SEC13 93.4
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 93.28
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 93.23
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 92.99
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 92.09
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 91.14
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 88.91
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 86.83
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 86.27
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 85.69
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 84.95
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 83.66
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 82.88
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 81.62
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 81.48
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
Probab=99.91  E-value=5.5e-22  Score=182.27  Aligned_cols=242  Identities=12%  Similarity=0.119  Sum_probs=178.0

Q ss_pred             ceeeeecCCCceeeccCCCCCCCeeEEEecCceEEEEeCC----------CeEEEEcCCCCCeeeCCCCCCCCCCCceeE
Q 038464           84 HSIVFDSAEKTWKELNFPNSSPDSIPVAASGGLVCFRTAS----------GKFIVSNPVTGSSRELPPLDADTENQSLHA  153 (404)
Q Consensus        84 ~~~~~d~~~~~w~~l~~p~~~~~~~~~~s~~Glv~~~~~~----------~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~  153 (404)
                      ....||+.+++|..++..+.++....+++.+|.|++.++.          +.+++|||.+++|..+++++.   .+..++
T Consensus        40 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~---~r~~~~  116 (308)
T 1zgk_A           40 YLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSV---PRNRIG  116 (308)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSS---CCBTCE
T ss_pred             eEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCc---CccccE
Confidence            4579999999999997666555555567778988888762          468999999999999999984   444566


Q ss_pred             EEEEecCCCCCceEEEEEecccC---ceEEEEEeCCCCceeeccccccc-ccccccccccCCccccCCeEEEeecCCcee
Q 038464          154 IVMTTSSKNPSNYKLVLVYGELP---KLSFKVYNSCLNCWEEETLLLSR-KSEQALEVDSIDHHDDEDAVYFLSKAGNVV  229 (404)
Q Consensus       154 ~~~~g~~~~~~~~kv~~~~g~~~---~~~~~vy~~~~~~W~~~~~~~p~-~~~~~~~~~~~~~v~~~G~ly~~~~~~~~~  229 (404)
                      ++.+       +.+|+++||...   ...+++||+.+++|+.++. +|. +..+       ..+.+++.+|++||.....
T Consensus       117 ~~~~-------~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~-------~~~~~~~~iyv~GG~~~~~  181 (308)
T 1zgk_A          117 VGVI-------DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP-MLTRRIGV-------GVAVLNRLLYAVGGFDGTN  181 (308)
T ss_dssp             EEEE-------TTEEEEECCEETTEECCCEEEEETTTTEEEECCC-CSSCCBSC-------EEEEETTEEEEECCBCSSC
T ss_pred             EEEE-------CCEEEEEcCCCCCcccccEEEECCCCCeEeECCC-CCccccce-------EEEEECCEEEEEeCCCCCC
Confidence            6555       357999987532   3569999999999999987 664 2222       3467899999998853210


Q ss_pred             eecccCCCcccccceeeecCCceEEEEeccCCeEEEEecCCCceeeccccCCccccccceeEeeCCeEEEEEeeecccee
Q 038464          230 ATNMQRSPSKQYSSVITSKDGEEIVYFLNSCGTIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGELLVVVLSEFLESA  309 (404)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~i~~fD~~~~~w~~i~~~~p~~~~~~~~lv~~~g~L~~v~~~~~~~~~  309 (404)
                                                   ..+.+..||+.+++|+.++ ++|... ..+.++..+++||++++... ...
T Consensus       182 -----------------------------~~~~~~~yd~~~~~W~~~~-~~p~~r-~~~~~~~~~~~iyv~GG~~~-~~~  229 (308)
T 1zgk_A          182 -----------------------------RLNSAECYYPERNEWRMIT-AMNTIR-SGAGVCVLHNCIYAAGGYDG-QDQ  229 (308)
T ss_dssp             -----------------------------BCCCEEEEETTTTEEEECC-CCSSCC-BSCEEEEETTEEEEECCBCS-SSB
T ss_pred             -----------------------------cCceEEEEeCCCCeEeeCC-CCCCcc-ccceEEEECCEEEEEeCCCC-CCc
Confidence                                         0136999999999999985 355433 34567788999999998642 223


Q ss_pred             eEEEEEEeCCCCCeEEeccCChhHHHHhccCcceEEEEecCCEEEEEEecC---CCceEEEEECCCCceEECCCCCC
Q 038464          310 SLRVWRFDQDNGFWHQIAAMPPAMSHEFYGKKVDINCVAAGHQIFICFNSA---ELFSYVLCDLVTNEWVELPKCSM  383 (404)
Q Consensus       310 ~~~vw~l~~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~---~~~~~~~yd~~~~~w~~~~~~~~  383 (404)
                      .-++|.+|..+++|+++..+|..        +....++..++.|||+....   ....+.+||+++++|+.++.+|.
T Consensus       230 ~~~v~~yd~~~~~W~~~~~~p~~--------r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~  298 (308)
T 1zgk_A          230 LNSVERYDVETETWTFVAPMKHR--------RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTS  298 (308)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSC--------CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSS
T ss_pred             cceEEEEeCCCCcEEECCCCCCC--------ccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCCCCC
Confidence            45688999988999999988732        22334555688998764321   23678999999999999988773
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 404
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 4e-07
d2ovrb1102 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing 1e-06
d1p22a1118 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b 4e-05
d1nexb1100 a.158.1.1 (B:270-369) Cdc4 F-box and linker domain 0.003
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (104), Expect = 4e-07
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 23 EELNQDLLERVLSWLPTSTFFRLSSVCKRWKSVADSPSF 61
          + L  +LL  + S L      ++S VCKRW  +A   S 
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query404
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 99.79
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 99.63
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 99.5
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.19
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 99.13
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.46
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.36
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 97.96
d1k8kc_ 371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 83.21
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.3e-17  Score=147.26  Aligned_cols=240  Identities=13%  Similarity=0.144  Sum_probs=171.4

Q ss_pred             eeeeecCCCceeeccCCCCCCCeeEEEecCceEEEEeC----------CCeEEEEcCCCCCeeeCCCCCCCCCCCceeEE
Q 038464           85 SIVFDSAEKTWKELNFPNSSPDSIPVAASGGLVCFRTA----------SGKFIVSNPVTGSSRELPPLDADTENQSLHAI  154 (404)
Q Consensus        85 ~~~~d~~~~~w~~l~~p~~~~~~~~~~s~~Glv~~~~~----------~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~  154 (404)
                      ...||+.+++|.+++..+.++..+.+++.+|.+++.++          ...+++|||.+++|..+++++.   .+..+++
T Consensus        21 ~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~---~r~~~~~   97 (288)
T d1zgka1          21 LEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSV---PRNRIGV   97 (288)
T ss_dssp             EEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSS---CCBTCEE
T ss_pred             EEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccc---eecceec
Confidence            45899999999999766655555556777888888765          3578999999999999999984   4555666


Q ss_pred             EEEecCCCCCceEEEEEeccc---CceEEEEEeCCCCceeeccccccc-ccccccccccCCccccCCeEEEeecCCceee
Q 038464          155 VMTTSSKNPSNYKLVLVYGEL---PKLSFKVYNSCLNCWEEETLLLSR-KSEQALEVDSIDHHDDEDAVYFLSKAGNVVA  230 (404)
Q Consensus       155 ~~~g~~~~~~~~kv~~~~g~~---~~~~~~vy~~~~~~W~~~~~~~p~-~~~~~~~~~~~~~v~~~G~ly~~~~~~~~~~  230 (404)
                      +.+       +.|++++++..   .....+.|+..++.|..... .+. +..+       ..+..++.+|++++....  
T Consensus        98 ~~~-------~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~-------~~~~~~~~~~~~GG~~~~--  160 (288)
T d1zgka1          98 GVI-------DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP-MLTRRIGV-------GVAVLNRLLYAVGGFDGT--  160 (288)
T ss_dssp             EEE-------TTEEEEECCEETTEECCCEEEEETTTTEEEECCC-CSSCCBSC-------EEEEETTEEEEECCBCSS--
T ss_pred             ccc-------ceeeEEecceecccccceeeeeccccCccccccc-cccccccc-------eeeeeeecceEecCcccc--
Confidence            555       46788887642   23468999999999998877 443 2221       346778899888764210  


Q ss_pred             ecccCCCcccccceeeecCCceEEEEeccCCeEEEEecCCCceeeccccCCccccccceeEeeCCeEEEEEeeeccceee
Q 038464          231 TNMQRSPSKQYSSVITSKDGEEIVYFLNSCGTIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGELLVVVLSEFLESAS  310 (404)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~i~~fD~~~~~w~~i~~~~p~~~~~~~~lv~~~g~L~~v~~~~~~~~~~  310 (404)
                                                 .....+..||+.++.|...+.. +... ..+..+..+++++++++.. .....
T Consensus       161 ---------------------------~~~~~~~~~d~~~~~~~~~~~~-~~~~-~~~~~~~~~~~i~i~GG~~-~~~~~  210 (288)
T d1zgka1         161 ---------------------------NRLNSAECYYPERNEWRMITAM-NTIR-SGAGVCVLHNCIYAAGGYD-GQDQL  210 (288)
T ss_dssp             ---------------------------CBCCCEEEEETTTTEEEECCCC-SSCC-BSCEEEEETTEEEEECCBC-SSSBC
T ss_pred             ---------------------------cccceEEEeecccccccccccc-cccc-ccccccceeeeEEEecCcc-ccccc
Confidence                                       0012588999999999987532 2212 2356677899999998764 22334


Q ss_pred             EEEEEEeCCCCCeEEeccCChhHHHHhccCcceEEEEecCCEEEEEEecC---CCceEEEEECCCCceEECCCCC
Q 038464          311 LRVWRFDQDNGFWHQIAAMPPAMSHEFYGKKVDINCVAAGHQIFICFNSA---ELFSYVLCDLVTNEWVELPKCS  382 (404)
Q Consensus       311 ~~vw~l~~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~---~~~~~~~yd~~~~~w~~~~~~~  382 (404)
                      ...|.++..+++|+.+..+|.        .+....++..+++|||+....   ....+++||+++++|+.++++|
T Consensus       211 ~~~~~~~~~~~~~~~~~~~p~--------~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p  277 (288)
T d1zgka1         211 NSVERYDVETETWTFVAPMKH--------RRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMT  277 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSS--------CCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS
T ss_pred             cceeeeeecceeeecccCccC--------cccceEEEEECCEEEEEecCCCCeecceEEEEECCCCEEEECCCCC
Confidence            457788888889999988873        233345556789998764321   2356899999999999998877
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure