Citrus Sinensis ID: 038476

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE
Secondary Structure (PSIPRED)
cccEEEEcccHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEcccccccEEEEEEEccccccccEEcccccccccccccEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEcccccHHcHHHHHHHHHHccccccccccccccccccEEEEEEEccccccEccEEEEEEccccccHHccccccccccccccEEEcccccccccccccccc
Coil and Loop (DISEMBL)
mreilhiqggqcgnqigsNFWEVVCVNRVLIPlagyignsdlqLERVTVYYnkasngrsvpravlmdlepgtmdavrsgpygqmfrpnnfvfgqsragnnwakghyie
Flexible Loop (DISEMBL)
mreilhiqggqcgnqigSNFWEVVCVNRVLIPLAGyignsdlqLERVTVYYnkasngrsvpraVLMDLEPGTMDAVRSGPYGQMFRPNNFvfgqsragnnwakghyie
Low Complexity Region (SEG)
MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE
Disordered region (IsUnstruct)
***ILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLE******V**GPYGQMFRPNNFVFGQSRA**NW*******
Disordered Region (DISOPRED)
MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYI*
Disordered Region (DISEMBL)
MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE
Disordered Region (DISPRO)
*REILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRA***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	108	2.2.26 [Sep-21-2011]
P29514	449	Tubulin beta-6 chain OS=A	yes	no	1.0	0.240	0.796	1e-47
Q9ZRA8	447	Tubulin beta-5 chain OS=T	N/A	no	1.0	0.241	0.796	3e-47
Q43697	445	Tubulin beta-5 chain OS=Z	N/A	no	1.0	0.242	0.796	3e-47
Q9ZPN7	446	Tubulin beta-4 chain OS=E	N/A	no	1.0	0.242	0.796	3e-47
Q43594	447	Tubulin beta-1 chain OS=O	yes	no	1.0	0.241	0.796	3e-47
Q9ZRB2	445	Tubulin beta-1 chain OS=T	N/A	no	1.0	0.242	0.796	3e-47
P45960	447	Tubulin beta-4 chain OS=O	yes	no	1.0	0.241	0.796	4e-47
Q41783	446	Tubulin beta-6 chain OS=Z	N/A	no	1.0	0.242	0.796	4e-47
Q6VAF8	430	Tubulin beta-3 chain OS=G	N/A	no	1.0	0.251	0.796	4e-47
P18026	444	Tubulin beta-2 chain OS=Z	N/A	no	1.0	0.243	0.796	5e-47

>sp|P29514|TBB6_ARATH Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TUBB6 PE=2 SV=1

 Score =  187 bits (476), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 86/108 (79%), Positives = 94/108 (87%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREILHIQGGQCGNQIGS FWEVVC    + P   Y+GNSDLQLERV VYYN+AS GR V
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRA+LMDLEPGTMD+VR+GPYGQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZRA8|TBB5_WHEAT Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5 PE=2 SV=1

 Score =  186 bits (473), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 86/108 (79%), Positives = 93/108 (86%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREILHIQGGQCGNQIGS FWEVVC    + P   Y+G SDLQLERV VYYN+AS GR V
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRAVLMDLEPGTMD+VR+GPYGQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Triticum aestivum (taxid: 4565)

>sp|Q43697|TBB5_MAIZE Tubulin beta-5 chain OS=Zea mays GN=TUBB5 PE=2 SV=1

 Score =  186 bits (473), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 86/108 (79%), Positives = 93/108 (86%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREILHIQGGQCGNQIGS FWEVVC    + P   Y+G SDLQLERV VYYN+AS GR V
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRAVLMDLEPGTMD+VR+GPYGQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Zea mays (taxid: 4577)

>sp|Q9ZPN7|TBB4_ELEIN Tubulin beta-4 chain OS=Eleusine indica GN=TUBB4 PE=2 SV=1

 Score =  186 bits (473), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 86/108 (79%), Positives = 93/108 (86%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREILHIQGGQCGNQIGS FWEVVC    + P   Y+G SDLQLERV VYYN+AS GR V
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRAVLMDLEPGTMD+VR+GPYGQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Eleusine indica (taxid: 29674)

>sp|Q43594|TBB1_ORYSJ Tubulin beta-1 chain OS=Oryza sativa subsp. japonica GN=TUBB1 PE=2 SV=2

 Score =  186 bits (473), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 86/108 (79%), Positives = 93/108 (86%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREILHIQGGQCGNQIGS FWEVVC    + P   Y+G SDLQLERV VYYN+AS GR V
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRAVLMDLEPGTMD+VR+GPYGQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ZRB2|TBB1_WHEAT Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1 PE=2 SV=1

 Score =  186 bits (472), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 86/108 (79%), Positives = 93/108 (86%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREILHIQGGQCGNQIGS FWEVVC    + P   Y+G SDLQLERV VYYN+AS GR V
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRAVLMDLEPGTMD+VR+GPYGQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Triticum aestivum (taxid: 4565)

>sp|P45960|TBB4_ORYSJ Tubulin beta-4 chain OS=Oryza sativa subsp. japonica GN=TUBB4 PE=2 SV=1

 Score =  186 bits (472), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 86/108 (79%), Positives = 93/108 (86%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREILHIQGGQCGNQIG+ FWEVVC    + P   Y GNSDLQLERV VYYN+AS GR V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGNSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRAVLMDLEPGTMD+VR+GPYGQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q41783|TBB6_MAIZE Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=1

 Score =  186 bits (472), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 86/108 (79%), Positives = 93/108 (86%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREILHIQGGQCGNQIG+ FWEVVC    + P   Y GNSDLQLERV VYYN+AS GR V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGNSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRAVLMDLEPGTMD+VR+GPYGQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Zea mays (taxid: 4577)

>sp|Q6VAF8|TBB3_GOSHI Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV=1

 Score =  186 bits (472), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 86/108 (79%), Positives = 94/108 (87%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREILH+QGGQCGNQIGS FWEVVC    + P   YIG+SDLQLERV VYYN+AS GR V
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGSSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRAVLMDLEPGTMD+VR+GPYGQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Gossypium hirsutum (taxid: 3635)

>sp|P18026|TBB2_MAIZE Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=1

 Score =  186 bits (471), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 86/108 (79%), Positives = 93/108 (86%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREILHIQGGQCGNQIGS FWEVVC    + P   Y+G SD+QLERV VYYN+AS GR V
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYMGTSDVQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRAVLMDLEPGTMDAVR+GPYGQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  PRAVLMDLEPGTMDAVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
224133216	444	tubulin, beta chain [Populus trichocarpa	1.0	0.243	0.805	2e-46
358248510	449	beta-tubulin [Glycine max] gi|62546343|g	1.0	0.240	0.796	3e-46
356571899	450	PREDICTED: tubulin beta-1 chain-like [Gl	1.0	0.24	0.796	3e-46
217072500	449	unknown [Medicago truncatula]	1.0	0.240	0.787	4e-46
357469067	449	Tubulin beta chain [Medicago truncatula]	1.0	0.240	0.787	4e-46
15239914	449	tubulin beta-6 chain [Arabidopsis thalia	1.0	0.240	0.796	5e-46
357509277	527	Tubulin beta chain [Medicago truncatula]	1.0	0.204	0.796	5e-46
357509275	449	Tubulin beta chain [Medicago truncatula]	1.0	0.240	0.796	5e-46
224086779	448	tubulin, beta chain [Populus trichocarpa	1.0	0.241	0.805	7e-46
224055273	445	tubulin, beta chain [Populus trichocarpa	1.0	0.242	0.796	7e-46

>gi|224133216|ref|XP_002321512.1| tubulin, beta chain [Populus trichocarpa] gi|222868508|gb|EEF05639.1| tubulin, beta chain [Populus trichocarpa]

 Score =  189 bits (480), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 87/108 (80%), Positives = 94/108 (87%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREILHIQGGQCGNQIGS FWEVVC    + P   YIG +DLQLERV VYYN+ASNGR V
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGQYIGKTDLQLERVNVYYNEASNGRYV 60

Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRAVLMDLEPGTMD+VR+GPYGQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248510|ref|NP_001239638.1| beta-tubulin [Glycine max] gi|62546343|gb|AAX86048.1| tubulin B4 [Glycine max]

 Score =  188 bits (478), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 86/108 (79%), Positives = 94/108 (87%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREILH+QGGQCGNQIGS FWEVVC    + P   Y+GNSDLQLERV VYYN+AS GR V
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGKYVGNSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRAVLMDLEPGTMD+VR+GPYGQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571899|ref|XP_003554108.1| PREDICTED: tubulin beta-1 chain-like [Glycine max]

 Score =  188 bits (478), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 86/108 (79%), Positives = 94/108 (87%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREILH+QGGQCGNQIGS FWEVVC    + P   Y+GNSDLQLERV VYYN+AS GR V
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGKYVGNSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRAVLMDLEPGTMD+VR+GPYGQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072500|gb|ACJ84610.1| unknown [Medicago truncatula]

 Score =  188 bits (477), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 85/108 (78%), Positives = 94/108 (87%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREILHIQGGQCGNQIG+ FWEVVC    + P   Y+G+SDLQLER+ VYYN+AS GR V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYVGDSDLQLERINVYYNEASGGRFV 60

Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRAVLMDLEPGTMD+VRSGPYGQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357469067|ref|XP_003604818.1| Tubulin beta chain [Medicago truncatula] gi|355505873|gb|AES87015.1| Tubulin beta chain [Medicago truncatula] gi|388519653|gb|AFK47888.1| unknown [Medicago truncatula]

 Score =  188 bits (477), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 85/108 (78%), Positives = 94/108 (87%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREILHIQGGQCGNQIG+ FWEVVC    + P   Y+G+SDLQLER+ VYYN+AS GR V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYVGDSDLQLERINVYYNEASGGRFV 60

Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRAVLMDLEPGTMD+VRSGPYGQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239914|ref|NP_196786.1| tubulin beta-6 chain [Arabidopsis thaliana] gi|297811351|ref|XP_002873559.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|267079|sp|P29514.1|TBB6_ARATH RecName: Full=Tubulin beta-6 chain; AltName: Full=Beta-6-tubulin gi|13430696|gb|AAK25970.1|AF360260_1 putative tubulin beta-6 chain [Arabidopsis thaliana] gi|166904|gb|AAA32884.1| beta-6 tubulin [Arabidopsis thaliana] gi|9759392|dbj|BAB10043.1| tubulin beta-6 chain [Arabidopsis thaliana] gi|14532900|gb|AAK64132.1| putative tubulin beta-6 chain [Arabidopsis thaliana] gi|297319396|gb|EFH49818.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|332004400|gb|AED91783.1| tubulin beta-6 chain [Arabidopsis thaliana]

 Score =  187 bits (476), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 86/108 (79%), Positives = 94/108 (87%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREILHIQGGQCGNQIGS FWEVVC    + P   Y+GNSDLQLERV VYYN+AS GR V
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRA+LMDLEPGTMD+VR+GPYGQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509277|ref|XP_003624927.1| Tubulin beta chain [Medicago truncatula] gi|355499942|gb|AES81145.1| Tubulin beta chain [Medicago truncatula]

 Score =  187 bits (476), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 86/108 (79%), Positives = 94/108 (87%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREILH+QGGQCGNQIGS FWEVVC    + P   Y+GNSDLQLERV VYYN+AS GR V
Sbjct: 79  MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRFV 138

Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRAVLMDLEPGTMD+VR+GPYGQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 139 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 186

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509275|ref|XP_003624926.1| Tubulin beta chain [Medicago truncatula] gi|355499941|gb|AES81144.1| Tubulin beta chain [Medicago truncatula]

 Score =  187 bits (476), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 86/108 (79%), Positives = 94/108 (87%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREILH+QGGQCGNQIGS FWEVVC    + P   Y+GNSDLQLERV VYYN+AS GR V
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRAVLMDLEPGTMD+VR+GPYGQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086779|ref|XP_002307960.1| tubulin, beta chain [Populus trichocarpa] gi|222853936|gb|EEE91483.1| tubulin, beta chain [Populus trichocarpa]

 Score =  187 bits (475), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 87/108 (80%), Positives = 94/108 (87%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREILHIQGGQCGNQIGS FWEVVC    + P   YIG+SDLQLERV VYYN+AS GR V
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGSSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRAVLMDLEPGTMD+VR+GPYGQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055273|ref|XP_002298455.1| tubulin, beta chain [Populus trichocarpa] gi|222845713|gb|EEE83260.1| tubulin, beta chain [Populus trichocarpa]

 Score =  187 bits (475), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 86/108 (79%), Positives = 93/108 (86%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREILHIQGGQCGNQIGS FWEVVC    + P   Y G+SDLQLERV VYYN+AS GR V
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYTGSSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRAVLMDLEPGTMD+VR+GPYGQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
TAIR|locus:2177003	449	TUB6 "beta-6 tubulin" [Arabido	1.0	0.240	0.796	9.1e-45
TAIR|locus:2172254	450	TUB2 "tubulin beta chain 2" [A	1.0	0.24	0.777	1.3e-43
TAIR|locus:2172214	450	TUB3 "tubulin beta chain 3" [A	1.0	0.24	0.777	1.3e-43
TAIR|locus:2005724	447	TUB1 "tubulin beta-1 chain" [A	1.0	0.241	0.761	7.3e-43
TAIR|locus:505006632	449	TUB8 "tubulin beta 8" [Arabido	1.0	0.240	0.777	9.3e-43
TAIR|locus:2043082	449	TUB7 "tubulin beta-7 chain" [A	1.0	0.240	0.777	1.5e-42
TAIR|locus:2198661	449	TUB5 "tubulin beta-5 chain" [A	1.0	0.240	0.743	1.4e-41
TAIR|locus:2158755	444	TUB4 "tubulin beta chain 4" [A	1.0	0.243	0.722	3.6e-41
ZFIN|ZDB-GENE-030131-7741	444	zgc:65894 "zgc:65894" [Danio r	1.0	0.243	0.703	1.2e-40
TAIR|locus:2133084	444	TUB9 "tubulin beta-9 chain" [A	1.0	0.243	0.712	2e-40

TAIR|locus:2177003 TUB6 "beta-6 tubulin" [Arabidopsis thaliana (taxid:3702)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 86/108 (79%), Positives = 94/108 (87%)

Query:     1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
             MREILHIQGGQCGNQIGS FWEVVC    + P   Y+GNSDLQLERV VYYN+AS GR V
Sbjct:     1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60

Query:    61 PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
             PRA+LMDLEPGTMD+VR+GPYGQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct:    61 PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

GO:0003924 "GTPase activity" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005874 "microtubule" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA;ISS

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0015630 "microtubule cytoskeleton" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2172254 TUB2 "tubulin beta chain 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 84/108 (77%), Positives = 92/108 (85%)

Query:     1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
             MREILHIQGGQCGNQIG+ FWEVVC    + P   Y G+SDLQLER+ VYYN+AS GR V
Sbjct:     1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60

Query:    61 PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
             PRAVLMDLEPGTMD++RSGPYGQ FRP+NFVFGQS AGNNWAKGHY E
Sbjct:    61 PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTE 108

GO:0003924 "GTPase activity" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005874 "microtubule" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0045298 "tubulin complex" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2172214 TUB3 "tubulin beta chain 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 84/108 (77%), Positives = 92/108 (85%)

Query:     1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
             MREILHIQGGQCGNQIG+ FWEVVC    + P   Y G+SDLQLER+ VYYN+AS GR V
Sbjct:     1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60

Query:    61 PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
             PRAVLMDLEPGTMD++RSGPYGQ FRP+NFVFGQS AGNNWAKGHY E
Sbjct:    61 PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTE 108

GO:0003924 "GTPase activity" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005874 "microtubule" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0045298 "tubulin complex" evidence=TAS

GO:0005618 "cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2005724 TUB1 "tubulin beta-1 chain" [Arabidopsis thaliana (taxid:3702)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 83/109 (76%), Positives = 93/109 (85%)

Query:     1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNS-DLQLERVTVYYNKASNGRS 59
             MREILH+QGGQCGNQIGS FWEV+C    + P   Y G+S DLQLER+ VYYN+AS GR 
Sbjct:     1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRY 60

Query:    60 VPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
             VPRAVLMDLEPGTMD++RSGPYGQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct:    61 VPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 109

GO:0003924 "GTPase activity" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005874 "microtubule" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009826 "unidimensional cell growth" evidence=IEP

TAIR|locus:505006632 TUB8 "tubulin beta 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 84/108 (77%), Positives = 91/108 (84%)

Query:     1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
             MREILHIQGGQCGNQIG+ FWEVVC    +     Y G +DLQLERV VYYN+AS GR V
Sbjct:     1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60

Query:    61 PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
             PRAVLMDLEPGTMD+VRSGPYGQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct:    61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

GO:0003924 "GTPase activity" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005874 "microtubule" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA;ISS

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0045298 "tubulin complex" evidence=ISS

GO:0016020 "membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

TAIR|locus:2043082 TUB7 "tubulin beta-7 chain" [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 84/108 (77%), Positives = 93/108 (86%)

Query:     1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
             MREILHIQGGQCGNQIGS FWEVV +   +     Y+G+S+LQLERV VYYN+AS GR V
Sbjct:     1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCGRYV 60

Query:    61 PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
             PRAVLMDLEPGTMD+VRSGPYGQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct:    61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

GO:0003924 "GTPase activity" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005874 "microtubule" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA;ISS

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0045298 "tubulin complex" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

TAIR|locus:2198661 TUB5 "tubulin beta-5 chain" [Arabidopsis thaliana (taxid:3702)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 81/109 (74%), Positives = 92/109 (84%)

Query:     1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNS-DLQLERVTVYYNKASNGRS 59
             MREILHIQGGQCGNQIGS FWEV+C    +     Y G++ DLQLER+ VYYN+AS GR 
Sbjct:     1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGGRY 60

Query:    60 VPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
             VPRAVLMDLEPGTMD++RSGP+GQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct:    61 VPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 109

GO:0003924 "GTPase activity" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005874 "microtubule" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA;ISS

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0045298 "tubulin complex" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

TAIR|locus:2158755 TUB4 "tubulin beta chain 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 78/108 (72%), Positives = 92/108 (85%)

Query:     1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
             MREILHIQGGQCGNQIG+ FWEV+C    +     Y+G+S LQLER+ VY+N+AS G+ V
Sbjct:     1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEASGGKYV 60

Query:    61 PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
             PRAVLMDLEPGTMD++RSGP+GQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct:    61 PRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

GO:0003924 "GTPase activity" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0045298 "tubulin complex" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0005886 "plasma membrane" evidence=IDA

ZFIN|ZDB-GENE-030131-7741 zgc:65894 "zgc:65894" [Danio rerio (taxid:7955)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 76/108 (70%), Positives = 92/108 (85%)

Query:     1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
             MREILH+Q GQCGNQIG+ FWEV+     + P   Y G+SDLQL+R++VYYN+AS G+ V
Sbjct:     1 MREILHLQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLDRISVYYNEASGGKYV 60

Query:    61 PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
             PRA+L+DLEPGTMD+VRSGP+GQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct:    61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

GO:0043234 "protein complex" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

TAIR|locus:2133084 TUB9 "tubulin beta-9 chain" [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 77/108 (71%), Positives = 91/108 (84%)

Query:     1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
             MREILHIQGGQCGNQIG+ FWEV+C    +       G++DLQLER+ VY+N+AS G+ V
Sbjct:     1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEASGGKYV 60

Query:    61 PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
             PRAVLMDLEPGTMD++RSGP+GQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct:    61 PRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

GO:0003924 "GTPase activity" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005874 "microtubule" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0045298 "tubulin complex" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q40665	TBB3_ORYSJ	No assigned EC number	0.7685	1.0	0.2421	yes	no
P29514	TBB6_ARATH	No assigned EC number	0.7962	1.0	0.2405	yes	no
P14140	TBB_PLAFA	No assigned EC number	0.7037	1.0	0.2426	yes	no
Q8H7U1	TBB2_ORYSJ	No assigned EC number	0.7777	1.0	0.2416	yes	no
P29515	TBB7_ARATH	No assigned EC number	0.7777	1.0	0.2405	yes	no
Q76FS3	TBB6_ORYSJ	No assigned EC number	0.7962	1.0	0.2432	yes	no
P45960	TBB4_ORYSJ	No assigned EC number	0.7962	1.0	0.2416	yes	no
P46265	TBB5_ORYSJ	No assigned EC number	0.7592	1.0	0.2416	yes	no
P28551	TBB3_SOYBN	No assigned EC number	0.7592	1.0	0.2647	yes	no
P37832	TBB7_ORYSJ	No assigned EC number	0.7592	1.0	0.2432	yes	no
Q43594	TBB1_ORYSJ	No assigned EC number	0.7962	1.0	0.2416	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: BRADI2G21340.1 annotation not avaliable (447 aa) (Brachypodium distachyon)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	108
PLN00220	447	PLN00220, PLN00220, tubulin beta chain; Provisiona	9e-70
cd02187	425	cd02187, beta_tubulin, The tubulin superfamily inc	1e-61
PTZ00010	445	PTZ00010, PTZ00010, tubulin beta chain; Provisiona	2e-61
COG5023	443	COG5023, COG5023, Tubulin [Cytoskeleton]	4e-46
PTZ00335	448	PTZ00335, PTZ00335, tubulin alpha chain; Provision	1e-25
cd02188	431	cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit	4e-24
PLN00221	450	PLN00221, PLN00221, tubulin alpha chain; Provision	2e-23
cd02186	434	cd02186, alpha_tubulin, The tubulin superfamily in	1e-22
pfam00091	210	pfam00091, Tubulin, Tubulin/FtsZ family, GTPase do	3e-22
PLN00222	454	PLN00222, PLN00222, tubulin gamma chain; Provision	7e-21
PTZ00387	465	PTZ00387, PTZ00387, epsilon tubulin; Provisional	1e-19
cd06059	382	cd06059, Tubulin, The tubulin superfamily includes	2e-18
cd00286	328	cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ	4e-18
cd02190	379	cd02190, epsilon_tubulin, The tubulin superfamily	1e-16
smart00864	192	smart00864, Tubulin, Tubulin/FtsZ family, GTPase d	5e-16
cd02189	446	cd02189, delta_tubulin, The tubulin superfamily in	2e-15

>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional

 Score =  214 bits (547), Expect = 9e-70
 Identities = 85/108 (78%), Positives = 93/108 (86%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREILHIQGGQCGNQIG+ FWEVVC    + P   Y G+SDLQLER+ VYYN+AS GR V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYV 60

Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRAVLMDLEPGTMD+VRSGPYGQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

Length = 447

>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

 Score =  193 bits (492), Expect = 1e-61
 Identities = 76/107 (71%), Positives = 90/107 (84%)

Query: 2   REILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVP 61
           REI+HIQ GQCGNQIG+ FWEV+     L P   Y G+SDLQLER+ VY+N+AS G+ VP
Sbjct: 1   REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVP 60

Query: 62  RAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           RA+L+DLEPGTMD+VRSGP+GQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  RAILVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTE 107

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins. Length = 425

>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional

 Score =  193 bits (491), Expect = 2e-61
 Identities = 79/108 (73%), Positives = 91/108 (84%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREI+HIQ GQCGNQIGS FWEV+     + P   Y G+SDLQLER+ VYYN+A+ GR V
Sbjct: 1   MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATGGRYV 60

Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRAVLMDLEPGTMD+VR+GPYGQ+FRP+NF+FGQS AGNNWAKGHY E
Sbjct: 61  PRAVLMDLEPGTMDSVRAGPYGQLFRPDNFIFGQSGAGNNWAKGHYTE 108

Length = 445

>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton]

 Score =  152 bits (387), Expect = 4e-46
 Identities = 57/108 (52%), Positives = 78/108 (72%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREI+ +Q GQCGNQIG+ FWE +C+   + P    + +SD   ER  V++ +AS+G+ V
Sbjct: 1   MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFV 60

Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRA+L+DLEPG +D VR+GPYG +F P N +FG+  AGNNWA+GHY  
Sbjct: 61  PRAILVDLEPGVIDQVRNGPYGSLFHPENIIFGKEGAGNNWARGHYTV 108

Length = 443

>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional

 Score = 98.2 bits (245), Expect = 1e-25
 Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 8/111 (7%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVL-----IPLAGYIGNSDLQLERVTVYYNKAS 55
           MRE++ I  GQ G Q+G+  WE+ C+   +     +P    IG  D        ++++  
Sbjct: 1   MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAF---NTFFSETG 57

Query: 56  NGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
            G+ VPR V +DLEP  +D VR+G Y Q+F P   + G+  A NN+A+GHY
Sbjct: 58  AGKHVPRCVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108

Length = 448

>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily

 Score = 94.2 bits (235), Expect = 4e-24
 Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 14/114 (12%)

Query: 2   REILHIQGGQCGNQIGSNFWEVVCV------NRVLIPLAGYIGNSDLQLERVTVYYNKAS 55
           REI+ +Q GQCGNQIGS FW+ +C       + +L   A   G      +R  V++ +A 
Sbjct: 1   REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGG------DRKDVFFYQAD 54

Query: 56  NGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSR--AGNNWAKGHYI 107
           +   VPRA+L+DLEP  ++++++  Y  ++ P N    +    AGNNWA G+  
Sbjct: 55  DEHYVPRAILIDLEPRVINSIQNSEYRNLYNPENIFLSKHGGGAGNNWASGYSQ 108

Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping. Length = 431

>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional

 Score = 92.2 bits (229), Expect = 2e-23
 Identities = 41/111 (36%), Positives = 63/111 (56%), Gaps = 8/111 (7%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVL-----IPLAGYIGNSDLQLERVTVYYNKAS 55
           MRE + I  GQ G Q+G+  WE+ C+   +     +P    +G  D   +    ++++  
Sbjct: 1   MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD---DAFNTFFSETG 57

Query: 56  NGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
            G+ VPRAV +DLEP  +D VR+G Y Q+F P   + G+  A NN+A+GHY
Sbjct: 58  AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108

Length = 450

>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

 Score = 90.4 bits (225), Expect = 1e-22
 Identities = 40/108 (37%), Positives = 61/108 (56%), Gaps = 4/108 (3%)

Query: 2   REILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYI---GNSDLQLERVTVYYNKASNGR 58
           RE++ I  GQ G QIG+  WE+ C+    I   G +          +    ++++  +G+
Sbjct: 1   REVISIHIGQAGIQIGNACWELYCLEHG-IQPDGQMPSDKTIGGGDDAFNTFFSETGSGK 59

Query: 59  SVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
            VPRAV +DLEP  +D VR+G Y Q+F P   + G+  A NN+A+GHY
Sbjct: 60  HVPRAVFIDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 107

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins. Length = 434

>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain

 Score = 85.8 bits (213), Expect = 3e-22
 Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 7/104 (6%)

Query: 4   ILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRA 63
           I+ I  G  GN IG+  WE++C    + P            +++ V++ ++ +G   PR 
Sbjct: 1   IIVIGVGGAGNNIGNALWELLCKEHGIDP-----DGMLFHADKINVFFEESGDGVYGPRF 55

Query: 64  VLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYI 107
           + +D +P  ++ +++G   ++F  NN   G   AGNN A G+Y 
Sbjct: 56  IAIDTDPQVLNEIKAGN--KLFIGNNLTKGLEGAGNNPAVGYYT 97

This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules. Length = 210

>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional

 Score = 85.3 bits (211), Expect = 7e-21
 Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 8/109 (7%)

Query: 2   REILHIQGGQCGNQIGSNFWEVVCVNRVLIP---LAGYIGNSDLQLERVTVYYNKASNGR 58
           REI+ +Q GQCGNQIG  FW+ +C+   +     L  +        +R  V++ +A +  
Sbjct: 3   REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG---DRKDVFFYQADDEH 59

Query: 59  SVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQS--RAGNNWAKGH 105
            +PRA+L+DLEP  ++ +++  Y  ++   N         AGNNWA G+
Sbjct: 60  YIPRALLIDLEPRVINGIQNSEYRNLYNHENIFVSDHGGGAGNNWASGY 108

Length = 454

>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional

 Score = 81.7 bits (202), Expect = 1e-19
 Identities = 41/114 (35%), Positives = 57/114 (50%), Gaps = 15/114 (13%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQL-ERVTVYYNKASNGRS 59
            REI+ +Q GQCGNQ+G  FW+V       I       N++ Q  +    ++   S   +
Sbjct: 1   PREIVTVQVGQCGNQLGHRFWDVALKEHKKI-------NANPQYDDARDSFFENVSENVN 53

Query: 60  VP-------RAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
            P       RAVL+D+E G ++ +   P G +F  N FV   S AGNNWA GH 
Sbjct: 54  RPGKENLKARAVLVDMEEGVLNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHM 107

Length = 465

>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

 Score = 77.7 bits (192), Expect = 2e-18
 Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 39/104 (37%)

Query: 3   EILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPR 62
           EI+ IQ GQCGNQIG+ FWE+                                       
Sbjct: 1   EIISIQIGQCGNQIGNKFWEL--------------------------------------- 21

Query: 63  AVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
            +L+DL+P  ++ +  G   ++F PN  V G+  +GNNWA+G+Y
Sbjct: 22  LILVDLDPRVINEILQGQLSKLFDPNQLVNGKEGSGNNWARGYY 65

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins. Also included in this group is the mitochondrial Misato/DML1 protein family, involved in mitochondrial fusion and in mitochondrial distribution and morphology. Length = 382

>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation

 Score = 77.1 bits (190), Expect = 4e-18
 Identities = 34/106 (32%), Positives = 40/106 (37%), Gaps = 39/106 (36%)

Query: 3   EILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPR 62
           EI+ IQ GQ GNQIG+ FWE                                        
Sbjct: 1   EIVTIQLGQAGNQIGAKFWEQ--------------------------------------- 21

Query: 63  AVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
            VL+D EPG +D   SGPY  +F     +     AGNNWA GH   
Sbjct: 22  LVLVDTEPGVIDETLSGPYRLLFCIGQLITHGGGAGNNWAFGHETA 67

Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts. Length = 328

>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

 Score = 73.1 bits (180), Expect = 1e-16
 Identities = 38/105 (36%), Positives = 49/105 (46%), Gaps = 30/105 (28%)

Query: 2   REILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVP 61
           REI+ +Q GQCGNQIG  FW                   DL L      + KA       
Sbjct: 1   REIIVVQVGQCGNQIGCRFW-------------------DLALRE----HLKA------- 30

Query: 62  RAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
           RAVL+D+E G ++ +  GP   +F     V   S AGNNWA G++
Sbjct: 31  RAVLIDMEEGVVNEILKGPLRDLFDETQLVTDVSGAGNNWAVGYH 75

The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis. Length = 379

>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain

 Score = 69.1 bits (170), Expect = 5e-16
 Identities = 21/50 (42%), Positives = 28/50 (56%)

Query: 57  GRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
           G   P AV +DLEPG +D VR+    Q   P +   G+ +AGNNW +G  
Sbjct: 8   GGGGPNAVNVDLEPGVIDGVRANTDAQALNPESLASGKIQAGNNWTRGLG 57

This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. Length = 192

>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 16/110 (14%)

Query: 4   ILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSD---LQLERVTVYYNK--ASNGR 58
           ++ +Q GQCGNQ+G   ++          LA    +SD    + ER          S+G+
Sbjct: 2   VVTVQLGQCGNQLGHELFDT---------LAKEASSSDDEGYKYERDAQERFFSEKSDGQ 52

Query: 59  SVPRAVLMDLEPGTMDAVRSGPYGQM--FRPNNFVFGQSRAGNNWAKGHY 106
            + R+VL+D+EP  +++  S   G    +   N +  QS +GNNWA G+Y
Sbjct: 53  PIARSVLVDMEPKVIESTLSKSSGGTWKYDKKNVICQQSGSGNNWAYGYY 102

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies. Length = 446

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	108
COG5023	443	Tubulin [Cytoskeleton]	100.0
KOG1374	448	consensus Gamma tubulin [Cytoskeleton]	100.0
PLN00221	450	tubulin alpha chain; Provisional	100.0
PTZ00335	448	tubulin alpha chain; Provisional	100.0
PLN00220	447	tubulin beta chain; Provisional	100.0
PLN00222	454	tubulin gamma chain; Provisional	100.0
cd02188	431	gamma_tubulin Gamma-tubulin is a ubiquitous phylog	100.0
PTZ00387	465	epsilon tubulin; Provisional	100.0
PTZ00010	445	tubulin beta chain; Provisional	100.0
cd02186	434	alpha_tubulin The tubulin superfamily includes fiv	100.0
cd02187	425	beta_tubulin The tubulin superfamily includes five	100.0
cd02189	446	delta_tubulin The tubulin superfamily includes fiv	100.0
KOG1376	407	consensus Alpha tubulin [Cytoskeleton]	99.97
PF00091	216	Tubulin: Tubulin/FtsZ family, GTPase domain; Inter	99.97
cd02190	379	epsilon_tubulin The tubulin superfamily includes f	99.97
cd06059	382	Tubulin The tubulin superfamily includes five dist	99.88
cd00286	328	Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin	99.77
cd06060	493	misato Human Misato shows similarity with Tubulin/	99.21
KOG1375	369	consensus Beta tubulin [Cytoskeleton]	99.15
PF10644	115	Misat_Tub_SegII: Misato Segment II tubulin-like do	99.14
smart00864	192	Tubulin Tubulin/FtsZ family, GTPase domain. This d	99.1
KOG2530	483	consensus Members of tubulin/FtsZ family [Cytoskel	98.65
cd02202	349	FtsZ_type2 FtsZ is a GTPase that is similar to the	98.05
cd02191	303	FtsZ FtsZ is a GTPase that is similar to the eukar	92.92
cd02201	304	FtsZ_type1 FtsZ is a GTPase that is similar to the	88.57
TIGR00065	349	ftsZ cell division protein FtsZ. This family consi	86.19

>COG5023 Tubulin [Cytoskeleton]

Probab=100.00  E-value=9.1e-51  Score=305.65  Aligned_cols=108  Identities=53%  Similarity=1.039  Sum_probs=105.7

Q ss_pred             CEeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccC
Q 038476            1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGP   80 (108)
Q Consensus         1 m~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~   80 (108)
                      |||||+||+||||||||.+||++||+||||+++|.+.+.++.+.++.++||+|++.++||||||+||+||.||+.+++++
T Consensus         1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~   80 (443)
T COG5023           1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGP   80 (443)
T ss_pred             CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCc
Confidence            99999999999999999999999999999999999998888888999999999999999999999999999999999999


Q ss_pred             CCCCCCCCceEeccCCCCcccccccccC
Q 038476           81 YGQMFRPNNFVFGQSRAGNNWAKGHYIE  108 (108)
Q Consensus        81 ~~~lf~~~n~i~~~~gsgnNwa~Gyy~~  108 (108)
                      +++||+|+|++++|+|||||||+||||+
T Consensus        81 y~~lf~Pen~i~gkegAgNnwA~GhYtv  108 (443)
T COG5023          81 YGSLFHPENIIFGKEGAGNNWARGHYTV  108 (443)
T ss_pred             cccccChhheeeccccccccccccccch
Confidence            9999999999999999999999999985

>KOG1374 consensus Gamma tubulin [Cytoskeleton]

Probab=100.00  E-value=2.2e-43  Score=266.10  Aligned_cols=107  Identities=37%  Similarity=0.722  Sum_probs=101.3

Q ss_pred             CEeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccC
Q 038476            1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGP   80 (108)
Q Consensus         1 m~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~   80 (108)
                      |+||||||+||||||||.+||++||.||+|.++|.+....+++.++.++||++.++++|+|||||||+||+||+.+.+++
T Consensus         2 ~~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~~~   81 (448)
T KOG1374|consen    2 PREIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFATEGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILSSP   81 (448)
T ss_pred             CceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhhhCccccccceeeccCCccccceeeeccchHHHhccccch
Confidence            68999999999999999999999999999999999888888888899999999999999999999999999999999999


Q ss_pred             CCCCCCCCceEecc--CCCCccccccccc
Q 038476           81 YGQMFRPNNFVFGQ--SRAGNNWAKGHYI  107 (108)
Q Consensus        81 ~~~lf~~~n~i~~~--~gsgnNwa~Gyy~  107 (108)
                      ++++|+|+|+++.+  .|||||||.||..
T Consensus        82 ~s~l~n~eni~~s~~ggGAGNNWA~GY~~  110 (448)
T KOG1374|consen   82 YSGLYNPENIFLSDHGGGAGNNWASGYSQ  110 (448)
T ss_pred             hhcccCccceEEecCCCCccccccccccc
Confidence            99999999999865  6899999999863

>PLN00221 tubulin alpha chain; Provisional

Probab=100.00  E-value=2.5e-42  Score=269.19  Aligned_cols=107  Identities=36%  Similarity=0.734  Sum_probs=98.6

Q ss_pred             CEeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCc--ccccceeeeEeecCCCCcccceeEecCCCCcccceec
Q 038476            1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSD--LQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRS   78 (108)
Q Consensus         1 m~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~   78 (108)
                      |||||+|||||||||||.+||+++++||+++++|.+...+.  ...+++++||+|+.+++|+|||||||+||++|++++.
T Consensus         1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~   80 (450)
T PLN00221          1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT   80 (450)
T ss_pred             CCeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhcc
Confidence            99999999999999999999999999999999997654332  2346789999999999999999999999999999999


Q ss_pred             cCCCCCCCCCceEeccCCCCccccccccc
Q 038476           79 GPYGQMFRPNNFVFGQSRAGNNWAKGHYI  107 (108)
Q Consensus        79 ~~~~~lf~~~n~i~~~~gsgnNwa~Gyy~  107 (108)
                      ++++++|+|++++++++|||||||+|||+
T Consensus        81 ~~~~~lf~~~~~i~~~~gagNnwa~Gy~~  109 (450)
T PLN00221         81 GTYRQLFHPEQLISGKEDAANNFARGHYT  109 (450)
T ss_pred             CccccccCccceeccCCCccccccccccc
Confidence            88889999999999999999999999987

>PTZ00335 tubulin alpha chain; Provisional

Probab=100.00  E-value=9.1e-42  Score=265.91  Aligned_cols=107  Identities=36%  Similarity=0.783  Sum_probs=98.7

Q ss_pred             CEeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCc--ccccceeeeEeecCCCCcccceeEecCCCCcccceec
Q 038476            1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSD--LQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRS   78 (108)
Q Consensus         1 m~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~   78 (108)
                      |||||+||+||||||||.+||+++++||+++++|.+...+.  ...+++++||+|+.+++|+|||||||+||++|++|+.
T Consensus         1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~   80 (448)
T PTZ00335          1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRT   80 (448)
T ss_pred             CCcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhccc
Confidence            99999999999999999999999999999999997754332  2346789999999999999999999999999999999


Q ss_pred             cCCCCCCCCCceEeccCCCCccccccccc
Q 038476           79 GPYGQMFRPNNFVFGQSRAGNNWAKGHYI  107 (108)
Q Consensus        79 ~~~~~lf~~~n~i~~~~gsgnNwa~Gyy~  107 (108)
                      ++++++|+|+|++++++|||||||+|||+
T Consensus        81 ~~~~~l~~~~~~i~~~~gagnnwa~Gy~~  109 (448)
T PTZ00335         81 GTYRQLFHPEQLISGKEDAANNFARGHYT  109 (448)
T ss_pred             CccccccCchheeecCCCCCCcccccccc
Confidence            98999999999999999999999999986

>PLN00220 tubulin beta chain; Provisional

Probab=100.00  E-value=3.4e-41  Score=262.66  Aligned_cols=107  Identities=79%  Similarity=1.350  Sum_probs=100.4

Q ss_pred             CEeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccC
Q 038476            1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGP   80 (108)
Q Consensus         1 m~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~   80 (108)
                      |+|||+||+||||||||.+||+++++||+++++|.++...+.+.+++++||+|.++++|+|||||||+||++|++++.++
T Consensus         1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~~~   80 (447)
T PLN00220          1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGP   80 (447)
T ss_pred             CCceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCcccccccccceeccCCCCcccceeEecCCcHHHHHHHhcCc
Confidence            99999999999999999999999999999999998766555445678999999999999999999999999999999999


Q ss_pred             CCCCCCCCceEeccCCCCccccccccc
Q 038476           81 YGQMFRPNNFVFGQSRAGNNWAKGHYI  107 (108)
Q Consensus        81 ~~~lf~~~n~i~~~~gsgnNwa~Gyy~  107 (108)
                      ++.+|+|++++++++|||||||+|||+
T Consensus        81 ~~~~~~~~~~~~~~~gagnnwa~G~~~  107 (447)
T PLN00220         81 YGQIFRPDNFVFGQSGAGNNWAKGHYT  107 (447)
T ss_pred             cccccCccceEecccCCCCccCceeec
Confidence            999999999999999999999999997

>PLN00222 tubulin gamma chain; Provisional

Probab=100.00  E-value=1.4e-40  Score=259.64  Aligned_cols=106  Identities=33%  Similarity=0.653  Sum_probs=97.4

Q ss_pred             CEeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccC
Q 038476            1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGP   80 (108)
Q Consensus         1 m~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~   80 (108)
                      |||||+|||||||||||.+||+++++||+++++|.+..+.+.+.++.++||+|+++++|+|||||||+||++|++++.++
T Consensus         2 m~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~~~   81 (454)
T PLN00222          2 PREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQNSE   81 (454)
T ss_pred             CccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccccccccccceeEEcCCCcccceeeecCCCcchhhhhccCc
Confidence            69999999999999999999999999999999998755444445778999999999999999999999999999999988


Q ss_pred             CCCCCCCCceEeccC--CCCcccccccc
Q 038476           81 YGQMFRPNNFVFGQS--RAGNNWAKGHY  106 (108)
Q Consensus        81 ~~~lf~~~n~i~~~~--gsgnNwa~Gyy  106 (108)
                      ++++|+|+|++++++  |||||||+||+
T Consensus        82 ~~~lf~~~~~~~~~~~~gagnn~a~Gy~  109 (454)
T PLN00222         82 YRNLYNHENIFVSDHGGGAGNNWASGYH  109 (454)
T ss_pred             cccccCccceeecccCCCcccchHHhHH
Confidence            999999999999996  69999999975

>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily

Probab=100.00  E-value=7e-40  Score=254.34  Aligned_cols=105  Identities=37%  Similarity=0.735  Sum_probs=97.2

Q ss_pred             EeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCC
Q 038476            2 REILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPY   81 (108)
Q Consensus         2 ~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~   81 (108)
                      ||||+|||||||||||.+||+++++||+++++|.+.++++...+++++||+|+++++|+|||||||+||++|++++.+++
T Consensus         1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~~~   80 (431)
T cd02188           1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNSEY   80 (431)
T ss_pred             CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCccccccccceeEEECCCCccCCcceeccCCcchhhhhhcCcc
Confidence            69999999999999999999999999999999987655444457789999999999999999999999999999999888


Q ss_pred             CCCCCCCceEeccC--CCCcccccccc
Q 038476           82 GQMFRPNNFVFGQS--RAGNNWAKGHY  106 (108)
Q Consensus        82 ~~lf~~~n~i~~~~--gsgnNwa~Gyy  106 (108)
                      +++|+|+|++++++  |||||||+||+
T Consensus        81 ~~lf~~~~~~~~~~~~gagnnwa~Gy~  107 (431)
T cd02188          81 RNLYNPENIFLSKHGGGAGNNWASGYS  107 (431)
T ss_pred             ccccCccceEeeccCCCccccHHHHHH
Confidence            99999999999998  99999999976

Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.

>PTZ00387 epsilon tubulin; Provisional

Probab=100.00  E-value=1.5e-39  Score=254.27  Aligned_cols=100  Identities=39%  Similarity=0.702  Sum_probs=90.6

Q ss_pred             CEeEEEEecCchHHHHHHHHHHHHHhhcC-CCCCCceeCCCcccccceeeeEeecC-----CC--CcccceeEecCCCCc
Q 038476            1 MREILHIQGGQCGNQIGSNFWEVVCVNRV-LIPLAGYIGNSDLQLERVTVYYNKAS-----NG--RSVPRAVLMDLEPGT   72 (108)
Q Consensus         1 m~eii~lqvGQcGnqiG~~fw~~l~~eh~-~~~~g~~~~~~~~~~~~~~~fF~e~~-----~~--~~vpRailiD~ep~~   72 (108)
                      |||||+|||||||||||.+||+++++||+ ++++|.+       .+++++||+|.+     .+  +|+|||||||+||+|
T Consensus         1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~-------~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep~v   73 (465)
T PTZ00387          1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY-------DDARDSFFENVSENVNRPGKENLKARAVLVDMEEGV   73 (465)
T ss_pred             CCcEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcc-------cccccceecccccccccCCCccccCcccccCCCccH
Confidence            99999999999999999999999999999 7777754       356789998532     23  499999999999999


Q ss_pred             ccceeccCCCCCCCCCceEeccCCCCccccccccc
Q 038476           73 MDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYI  107 (108)
Q Consensus        73 i~~i~~~~~~~lf~~~n~i~~~~gsgnNwa~Gyy~  107 (108)
                      |++|+.++++++|+|+|++++++|||||||+|||+
T Consensus        74 i~~i~~~~~~~~f~~~~~i~~~~GaGNnwa~G~~~  108 (465)
T PTZ00387         74 LNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHME  108 (465)
T ss_pred             HHHhhcCCcccccCcccccccCCCCCCCcCCCccc
Confidence            99999988999999999999999999999999986

>PTZ00010 tubulin beta chain; Provisional

Probab=100.00  E-value=3.3e-39  Score=251.43  Aligned_cols=107  Identities=73%  Similarity=1.287  Sum_probs=99.3

Q ss_pred             CEeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccC
Q 038476            1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGP   80 (108)
Q Consensus         1 m~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~   80 (108)
                      |+|||+||+||||||||.+||+++++||+++++|.+....+.+.+++++||+|+.+++|+|||||||+||++|+.++.++
T Consensus         1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~~~   80 (445)
T PTZ00010          1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGP   80 (445)
T ss_pred             CCcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccceeecccCCCceEEeeeeccCChhhhhhhcccc
Confidence            99999999999999999999999999999999998765444444678999999999999999999999999999999888


Q ss_pred             CCCCCCCCceEeccCCCCccccccccc
Q 038476           81 YGQMFRPNNFVFGQSRAGNNWAKGHYI  107 (108)
Q Consensus        81 ~~~lf~~~n~i~~~~gsgnNwa~Gyy~  107 (108)
                      ++.+|+|++++++++|||||||+|||+
T Consensus        81 ~~~lf~~~~~~~~~~gagNnwa~G~~~  107 (445)
T PTZ00010         81 YGQLFRPDNFIFGQSGAGNNWAKGHYT  107 (445)
T ss_pred             hhhhcCccceeecccCCccccccchhh
Confidence            888999999999999999999999986

>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

Probab=100.00  E-value=1.1e-38  Score=247.93  Aligned_cols=106  Identities=37%  Similarity=0.750  Sum_probs=97.9

Q ss_pred             EeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCc--ccccceeeeEeecCCCCcccceeEecCCCCcccceecc
Q 038476            2 REILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSD--LQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSG   79 (108)
Q Consensus         2 ~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~   79 (108)
                      ||||+||+||||||||.+||+++++||+++++|.+.+.++  ...+++++||+|+.+++|+|||||||+||++|++++.+
T Consensus         1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~   80 (434)
T cd02186           1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTG   80 (434)
T ss_pred             CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccC
Confidence            6999999999999999999999999999999997755433  34567899999999999999999999999999999988


Q ss_pred             CCCCCCCCCceEeccCCCCccccccccc
Q 038476           80 PYGQMFRPNNFVFGQSRAGNNWAKGHYI  107 (108)
Q Consensus        80 ~~~~lf~~~n~i~~~~gsgnNwa~Gyy~  107 (108)
                      +++.+|++++++.+++|||||||+|||+
T Consensus        81 ~~~~l~~~~~~~~~~~g~gnnwa~Gy~~  108 (434)
T cd02186          81 TYRQLFHPEQLISGKEDAANNFARGHYT  108 (434)
T ss_pred             ccccccCccceeecCCCCCcccccccch
Confidence            8889999999999999999999999986

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino

>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

Probab=100.00  E-value=3.8e-37  Score=238.75  Aligned_cols=106  Identities=71%  Similarity=1.259  Sum_probs=97.4

Q ss_pred             EeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCC
Q 038476            2 REILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPY   81 (108)
Q Consensus         2 ~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~   81 (108)
                      ||||+||+||||||||.+||+++++||+++++|.+....+...+.+++||+|+++++|+||||+||+||++|++++.+++
T Consensus         1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~   80 (425)
T cd02187           1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSGPF   80 (425)
T ss_pred             CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCccccccccceeEEecCCCceeeeeeeccCChhhhhhhhcCcc
Confidence            69999999999999999999999999999999877554443346788999999999999999999999999999988888


Q ss_pred             CCCCCCCceEeccCCCCccccccccc
Q 038476           82 GQMFRPNNFVFGQSRAGNNWAKGHYI  107 (108)
Q Consensus        82 ~~lf~~~n~i~~~~gsgnNwa~Gyy~  107 (108)
                      +.+|+|++++.+++|||||||+|||+
T Consensus        81 ~~l~~~~~~~~~~~gagnnwa~G~~~  106 (425)
T cd02187          81 GQLFRPDNFVFGQSGAGNNWAKGHYT  106 (425)
T ss_pred             cceecCcceeeccCCCCCccCccchh
Confidence            88999999999999999999999986

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-

>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

Probab=100.00  E-value=4.3e-37  Score=239.62  Aligned_cols=101  Identities=29%  Similarity=0.589  Sum_probs=91.2

Q ss_pred             eEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCC-
Q 038476            3 EILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPY-   81 (108)
Q Consensus         3 eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~-   81 (108)
                      .||+|||||||||||.+||++|++||+++++|.+.    ...+.+++||.|..+++|+|||||||+||+||++++.++. 
T Consensus         1 ~iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~----~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~~   76 (446)
T cd02189           1 SVVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYK----YERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSSG   76 (446)
T ss_pred             CeEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCcc----ccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCCC
Confidence            38999999999999999999999999999888653    2346779999999999999999999999999999988653 


Q ss_pred             -CCCCCCCceEeccCCCCccccccccc
Q 038476           82 -GQMFRPNNFVFGQSRAGNNWAKGHYI  107 (108)
Q Consensus        82 -~~lf~~~n~i~~~~gsgnNwa~Gyy~  107 (108)
                       +++|+|++++++++|||||||+|||+
T Consensus        77 ~~~~f~~~~~~~~~~gagnnwa~Gy~~  103 (446)
T cd02189          77 GTWKYDKKNVICQQSGSGNNWAYGYYV  103 (446)
T ss_pred             cccccCchheeecCCCCccchhccccc
Confidence             36899999999999999999999986

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.

>KOG1376 consensus Alpha tubulin [Cytoskeleton]

Probab=99.97  E-value=7.4e-32  Score=202.81  Aligned_cols=107  Identities=38%  Similarity=0.775  Sum_probs=100.3

Q ss_pred             CEeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcc--cccceeeeEeecCCCCcccceeEecCCCCcccceec
Q 038476            1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDL--QLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRS   78 (108)
Q Consensus         1 m~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~--~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~   78 (108)
                      |||||+||+||+|.|||.+.|+++|.||+|+++|..+.+.+.  ..+.++.||.++..++++||++|||+||. |++++.
T Consensus         1 m~e~i~ih~gqag~qi~naCwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff~~t~~~k~~pr~~fVDlEPt-idevrt   79 (407)
T KOG1376|consen    1 MREIISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFFSETGAGKHVPRAVFVDLEPT-IDEVRT   79 (407)
T ss_pred             CCcceeeeeccccccccchhHHHHHHHhcCccCCcCCCCccccccCcccceeecccccccccceeEEEeccCc-cchhcc
Confidence            999999999999999999999999999999999998775543  34467899999999999999999999999 999999


Q ss_pred             cCCCCCCCCCceEeccCCCCcccccccccC
Q 038476           79 GPYGQMFRPNNFVFGQSRAGNNWAKGHYIE  108 (108)
Q Consensus        79 ~~~~~lf~~~n~i~~~~gsgnNwa~Gyy~~  108 (108)
                      ++|+.+|.|++++.+++.|+||+|+||||+
T Consensus        80 G~y~~lfHPeqlitGkedAannyArghyt~  109 (407)
T KOG1376|consen   80 GTYRQLFHPEQLITGKEDAANNYARGHYTI  109 (407)
T ss_pred             cchhhccCchhccCcchHhhhhHHhhhhhc
Confidence            999999999999999999999999999985

>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins

Probab=99.97  E-value=1.2e-31  Score=191.69  Aligned_cols=101  Identities=42%  Similarity=0.852  Sum_probs=92.2

Q ss_pred             eEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCCC
Q 038476            3 EILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYG   82 (108)
Q Consensus         3 eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~~   82 (108)
                      |||+|||||||||||.+||+++++||+++++    .......++.++||+|...++++||+|+||+||++|++++..+.+
T Consensus         1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~----~~~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~~~   76 (216)
T PF00091_consen    1 EIIVIGIGQCGNQIGDAFWELLCREHGINPD----SKSQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASPKR   76 (216)
T ss_dssp             EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTT----SSSSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSEET
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHHHhhccccc----cccccccccccceeeeccccccccccccccccccccccccccccc
Confidence            8999999999999999999999999999887    223345567899999999999999999999999999999888777


Q ss_pred             CCCCCCceEeccCCCCccccccccc
Q 038476           83 QMFRPNNFVFGQSRAGNNWAKGHYI  107 (108)
Q Consensus        83 ~lf~~~n~i~~~~gsgnNwa~Gyy~  107 (108)
                      .+|++++++.+++|+||||++||++
T Consensus        77 ~l~~~~~~~~~~~g~g~n~~~G~~~  101 (216)
T PF00091_consen   77 SLFDPNNLISGQEGSGNNWAVGYYT  101 (216)
T ss_dssp             TESCGGGEEETSSTSTTSHHHHHHH
T ss_pred             ccccccccccccccccccccccccc
Confidence            8999999999999999999999973

These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....

>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

Probab=99.97  E-value=2.7e-31  Score=203.64  Aligned_cols=76  Identities=43%  Similarity=0.785  Sum_probs=73.4

Q ss_pred             EeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCC
Q 038476            2 REILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPY   81 (108)
Q Consensus         2 ~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~   81 (108)
                      ||||+|||||||||||.+||+++++||                              |+|||||||+||++|++++.+++
T Consensus         1 ~Eii~i~~GqcGnqig~~~w~~~~~eh------------------------------~~pR~v~iD~e~~~i~~i~~~~~   50 (379)
T cd02190           1 REIIVVQVGQCGNQIGCRFWDLALREH------------------------------LKARAVLIDMEEGVVNEILKGPL   50 (379)
T ss_pred             CceEEEecCcHHHHHHHHHHHHHHHhh------------------------------cCCcceeccCChhHHHHHhcCcc
Confidence            699999999999999999999999998                              78999999999999999999888


Q ss_pred             CCCCCCCceEeccCCCCccccccccc
Q 038476           82 GQMFRPNNFVFGQSRAGNNWAKGHYI  107 (108)
Q Consensus        82 ~~lf~~~n~i~~~~gsgnNwa~Gyy~  107 (108)
                      +++|+|+|++.+++|||||||+|||+
T Consensus        51 ~~~~~~~~~~~~~~gaGnn~a~G~~~   76 (379)
T cd02190          51 RDLFDETQLVTDVSGAGNNWAVGYHQ   76 (379)
T ss_pred             ccccCcccccccCCCCCCCccceeec
Confidence            99999999999999999999999986

The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.

>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

Probab=99.88  E-value=4.1e-23  Score=158.41  Aligned_cols=66  Identities=48%  Similarity=1.035  Sum_probs=63.8

Q ss_pred             eEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCCC
Q 038476            3 EILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYG   82 (108)
Q Consensus         3 eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~~   82 (108)
                      |||+|||||||||||.+||+++                                       |+||+||++|+.++.++.+
T Consensus         1 eii~i~vGq~G~qig~~~w~~~---------------------------------------i~iD~e~~~i~~i~~~~~~   41 (382)
T cd06059           1 EIISIQIGQCGNQIGNKFWELL---------------------------------------ILVDLDPRVINEILQGQLS   41 (382)
T ss_pred             CeEEEecCCcHHHHHHHHHHHH---------------------------------------HcccCCcchhhhhhccccc
Confidence            8999999999999999999998                                       9999999999999998888


Q ss_pred             CCCCCCceEeccCCCCccccccccc
Q 038476           83 QMFRPNNFVFGQSRAGNNWAKGHYI  107 (108)
Q Consensus        83 ~lf~~~n~i~~~~gsgnNwa~Gyy~  107 (108)
                      .+|++++++.+++|+|||||+|||+
T Consensus        42 ~~~~~~~~~~~~~g~gnn~a~G~~~   66 (382)
T cd06059          42 KLFDPNQLVNGKEGSGNNWARGYYT   66 (382)
T ss_pred             ccCCcccEEeccccccccccccccc
Confidence            8999999999999999999999986

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi

>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation

Probab=99.77  E-value=2.3e-19  Score=135.05  Aligned_cols=66  Identities=52%  Similarity=0.878  Sum_probs=62.6

Q ss_pred             eEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCCC
Q 038476            3 EILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYG   82 (108)
Q Consensus         3 eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~~   82 (108)
                      |||+||+||||||||.+||+++                                       |+||+||++++.++..+..
T Consensus         1 eii~i~iG~~G~~i~~~~~~~~---------------------------------------v~idtd~~~l~~~~~~~~~   41 (328)
T cd00286           1 EIVTIQLGQAGNQIGAKFWEQL---------------------------------------VLVDTEPGVIDETLSGPYR   41 (328)
T ss_pred             CeEEEecCccHhHHHHHHHHhh---------------------------------------heecCCHHHHHHHhCcccc
Confidence            8999999999999999999975                                       9999999999999888888


Q ss_pred             CCCCCCceEeccCCCCccccccccc
Q 038476           83 QMFRPNNFVFGQSRAGNNWAKGHYI  107 (108)
Q Consensus        83 ~lf~~~n~i~~~~gsgnNwa~Gyy~  107 (108)
                      .+|++.+.+.+++|||||||+|||+
T Consensus        42 ~~~~~~~~~~~~~gag~n~~~G~~~   66 (328)
T cd00286          42 LLFCIGQLITHGGGAGNNWAFGHET   66 (328)
T ss_pred             cccCccceeecCCCCCCCcceeecc
Confidence            8899999999999999999999986

Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.

>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria

Probab=99.21  E-value=2.7e-11  Score=95.99  Aligned_cols=98  Identities=20%  Similarity=0.268  Sum_probs=67.7

Q ss_pred             EeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecC----CCCcccceeEecCCCCccccee
Q 038476            2 REILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKAS----NGRSVPRAVLMDLEPGTMDAVR   77 (108)
Q Consensus         2 ~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~----~~~~vpRailiD~ep~~i~~i~   77 (108)
                      |||||||+||+.|.||..||+.....+..++++.      ....+.+++|+++.    ..+|.||+|++|+....-.--+
T Consensus         1 rEIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~~~------~~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gsl~~   74 (493)
T cd06060           1 REVLTLQLGHYANFVGTHWWNLQEANFGYDPDSP------ASELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGHLPE   74 (493)
T ss_pred             CceEEEeccCccccHhhhhhhhhhhhcCCCCCCc------cccCCCceeeeccccCCCceeEcCcEEEEecCCccccccc
Confidence            7999999999999999999998876665444432      22345689998844    5689999999999875322111


Q ss_pred             ccC------------C----CCCCCCCceEec-----cCCCCccccccc
Q 038476           78 SGP------------Y----GQMFRPNNFVFG-----QSRAGNNWAKGH  105 (108)
Q Consensus        78 ~~~------------~----~~lf~~~n~i~~-----~~gsgnNwa~Gy  105 (108)
                      .+.            |    +-.|.|+++..-     ..+++++|+.|+
T Consensus        75 ~~~l~~~~l~~~v~~WSDy~r~~yhPrS~~~L~~~~~~~~~~~fd~fg~  123 (493)
T cd06060          75 EGSLKVYNLEASVNVWSDYLYARLHPRSINVINQYNHDGTSQPFEVFGQ  123 (493)
T ss_pred             ccCcCCcccccchhhhhhcceeeeCCCceeeccchhcCCCCCCcccccc
Confidence            111            1    122778877653     346777888775

It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.

>KOG1375 consensus Beta tubulin [Cytoskeleton]

Probab=99.15  E-value=2e-11  Score=92.67  Aligned_cols=59  Identities=75%  Similarity=1.295  Sum_probs=53.4

Q ss_pred             CcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCCCCCCCCCceEeccCCCCccccccccc
Q 038476           40 SDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYI  107 (108)
Q Consensus        40 ~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~~~lf~~~n~i~~~~gsgnNwa~Gyy~  107 (108)
                      ++.|.++++++|+++..++|+||||++|+||.+++.++++++..+|+|+|   +++|      +|||+
T Consensus         4 ~~~q~~~i~~~~~~~~~~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~---~~sg------~ghy~   62 (369)
T KOG1375|consen    4 SDLQLERINVYYNEAGGGKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDN---GQSG------KGHYT   62 (369)
T ss_pred             ccceeeeeeeeecccccccccchhheeeccCccccccccCccceeccCcC---CccC------cccee
Confidence            45678999999999999999999999999999999999999999999999   5555      78886

>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []

Probab=99.14  E-value=5.2e-11  Score=78.03  Aligned_cols=64  Identities=27%  Similarity=0.436  Sum_probs=46.0

Q ss_pred             EeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecC----CCCcccceeEecCCCC
Q 038476            2 REILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKAS----NGRSVPRAVLMDLEPG   71 (108)
Q Consensus         2 ~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~----~~~~vpRailiD~ep~   71 (108)
                      ||||+||+|+.-|.||..||..-  |..+..+    ++.....-+.+++|++..    .-.|+||+|++|+-..
T Consensus         1 ~EIiTlq~G~~aN~vgtHfwN~Q--e~~~~y~----~~~~~~~i~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg~   68 (115)
T PF10644_consen    1 REIITLQLGHYANFVGTHFWNIQ--ESYLPYD----PDEKPSEIDHDVLFREGITLSGTVTYTPRLLLFDLKGG   68 (115)
T ss_pred             CcEEEEEcccccCcHHHhhhhhh--hcccccC----ccccCcccCCceEEecccCcCCCeeECCcEEEEecCCC
Confidence            79999999999999999999976  4433211    111101124689998853    3589999999997654

This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].

>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain

Probab=99.10  E-value=1.8e-11  Score=86.18  Aligned_cols=56  Identities=38%  Similarity=0.638  Sum_probs=50.3

Q ss_pred             eeEeecCCCCcccceeEecCCCCcccceeccCCCCCCCCCceEeccCCCCccccccccc
Q 038476           49 VYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYI  107 (108)
Q Consensus        49 ~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~~~lf~~~n~i~~~~gsgnNwa~Gyy~  107 (108)
                      .||.+.   ++.||+|++|+||++++.+..++.+.+|++++.+.++.++||||++|||+
T Consensus         3 ~~~g~g---~~g~r~v~~d~e~~~i~~i~~~t~~~~l~~~~~~~~k~~~Gn~~~~G~~~   58 (192)
T smart00864        3 KVFGVG---GYGPNAVLVDLEPGVVDEVRANTDAQALNPESLASGKIGAGNNWTRGLGA   58 (192)
T ss_pred             EEEEeC---CchhhHHhhhcccCCceEEEECCHHHHhCCcccccchhcccccccccCCC
Confidence            567654   78999999999999999998788788899999999999999999999986

This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.

>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]

Probab=98.65  E-value=1.2e-08  Score=79.44  Aligned_cols=69  Identities=29%  Similarity=0.348  Sum_probs=50.1

Q ss_pred             CEeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecC----CCCcccceeEecCCCCc
Q 038476            1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKAS----NGRSVPRAVLMDLEPGT   72 (108)
Q Consensus         1 m~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~----~~~~vpRailiD~ep~~   72 (108)
                      ||||+|||||+..|-+|..||.+-..-.+..++..-+..  ...-+ +++++...    ...|+||.|++|+....
T Consensus         1 mrEilTiq~g~~AnfvgtHfwN~Qea~l~~~~d~~~~~~--~~~~n-dvlyr~g~~~~~~~tytPRl~l~Dl~g~~   73 (483)
T KOG2530|consen    1 MREILTIQVGHFANFVGTHFWNQQEAYLGLATDSEEPPG--ELCPN-DVLYRTGRTDHGQITYTPRLLLVDLKGEL   73 (483)
T ss_pred             CceEEEEEeeccccchhhhhcchhhHhhccCCcccCChh--hcCcc-hhhhhccccccCceeeccceeEEecCccc
Confidence            999999999999999999999998666666554322111  11112 67887643    34799999999987654

>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes

Probab=98.05  E-value=3.8e-06  Score=64.32  Aligned_cols=69  Identities=19%  Similarity=0.216  Sum_probs=53.4

Q ss_pred             EEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCCCC
Q 038476            4 ILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYGQ   83 (108)
Q Consensus         4 ii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~~~   83 (108)
                      |..|-+|+||+.|-..+.+.=     +.                       ...+|+||+|+||+|+..++.++.     
T Consensus         3 i~viGvGg~G~niv~~l~~~~-----~~-----------------------~~~~~~~~~iavntD~~~L~~l~~-----   49 (349)
T cd02202           3 VLIIGVGQAGGRIVDALNRHD-----KR-----------------------SGFGYCVGALAINTAKNDLKGLKH-----   49 (349)
T ss_pred             EEEEEeCCcHHHHHHHHHHhC-----CC-----------------------cCCccceeEEEEECCHHHHHhhhc-----
Confidence            889999999999988775521     10                       113578999999999999998754     


Q ss_pred             CCCCCceEeccC-----CCCccccccc
Q 038476           84 MFRPNNFVFGQS-----RAGNNWAKGH  105 (108)
Q Consensus        84 lf~~~n~i~~~~-----gsgnNwa~Gy  105 (108)
                      ...|++++.+++     |+|+||..|.
T Consensus        50 ~~~~~ki~~g~~~t~G~GaG~~~~~G~   76 (349)
T cd02202          50 IPAEDRILIGQSEVKGHGVGADRELGA   76 (349)
T ss_pred             CCCCCEEEecCcccCCCCCCCChHHHH
Confidence            346788888874     8999999885

FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.

>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes

Probab=92.92  E-value=0.16  Score=38.39  Aligned_cols=67  Identities=19%  Similarity=0.138  Sum_probs=43.0

Q ss_pred             eEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCCC
Q 038476            3 EILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYG   82 (108)
Q Consensus         3 eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~~   82 (108)
                      -|..|-+|+||+.+-..+.+.     ++                         .   -.+.+.||+|.+.++.+.. +.+
T Consensus         2 ~i~viGvGg~G~n~v~~~~~~-----~~-------------------------~---~~~~iainTd~~~L~~~~a-~~k   47 (303)
T cd02191           2 KIAVIGFGGAGGNIVDKFLEY-----DK-------------------------E---GRSAVAVNTDAQDLLGLEA-ENR   47 (303)
T ss_pred             EEEEEEECchHHHHHHHHHHc-----CC-------------------------C---CccEEEEECcHHHHhcCCC-CcE
Confidence            378899999999998777641     11                         0   0367889999888876542 111


Q ss_pred             CCCCCCceEeccCCCCccccccc
Q 038476           83 QMFRPNNFVFGQSRAGNNWAKGH  105 (108)
Q Consensus        83 ~lf~~~n~i~~~~gsgnNwa~Gy  105 (108)
                      =++-++  .+...|||+||+.|+
T Consensus        48 i~iG~~--~t~g~GaG~~~~~G~   68 (303)
T cd02191          48 VLIGQA--RTKGLGAGANPELGA   68 (303)
T ss_pred             EecCCc--cccCCCCCCCHHHHH
Confidence            112111  123469999999885

FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.

>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes

Probab=88.57  E-value=0.65  Score=34.88  Aligned_cols=67  Identities=15%  Similarity=0.115  Sum_probs=42.5

Q ss_pred             EEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCCCC
Q 038476            4 ILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYGQ   83 (108)
Q Consensus         4 ii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~~~   83 (108)
                      |..|-||+||+.+=..+++.     ++                         .   -...+.+|+|.+.++.+.. +.+-
T Consensus         3 i~viGvGg~G~n~v~~l~~~-----~~-------------------------~---~~~~~a~ntD~~~L~~~~~-~~k~   48 (304)
T cd02201           3 IKVIGVGGGGGNAVNRMIES-----GL-------------------------E---GVEFIAANTDAQALAKSKA-PNKI   48 (304)
T ss_pred             EEEEEeCCcHHHHHHHHHHc-----CC-------------------------C---CceEEEEECCHHHHhcCCC-CcEE
Confidence            67899999999997776541     10                         0   0356788888877776542 1121


Q ss_pred             CCCCCceEeccCCCCcccccccc
Q 038476           84 MFRPNNFVFGQSRAGNNWAKGHY  106 (108)
Q Consensus        84 lf~~~n~i~~~~gsgnNwa~Gyy  106 (108)
                      ++-++  .+.-.|+|+||+.|+.
T Consensus        49 ~ig~~--~t~g~Gag~~~~~g~~   69 (304)
T cd02201          49 QLGKE--LTRGLGAGGDPEVGRK   69 (304)
T ss_pred             EcCCC--CCCCCCCCCCHHHHHH
Confidence            22222  1334689999999863

FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.

>TIGR00065 ftsZ cell division protein FtsZ

Probab=86.19  E-value=0.96  Score=34.88  Aligned_cols=67  Identities=15%  Similarity=0.139  Sum_probs=41.2

Q ss_pred             eEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCCC
Q 038476            3 EILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYG   82 (108)
Q Consensus         3 eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~~   82 (108)
                      -|..|-||+||+.+-..+.+.     ++                            .-...+.+|+|.+.++.+... .+
T Consensus        19 ~i~viGvGg~G~n~v~~l~~~-----~~----------------------------~~~~~iainTD~~~L~~~~a~-~k   64 (349)
T TIGR00065        19 KIKVIGVGGGGNNTVNRMLEE-----GV----------------------------EGVEFIAINTDAQHLKTTKAD-KK   64 (349)
T ss_pred             eEEEEEeCCcHHHHHHHHHHc-----CC----------------------------CceEEEEEECCHHHHhcCCCC-eE
Confidence            378899999999998776553     10                            014567788887776655421 11


Q ss_pred             CCCCCCceEeccCCCCccccccc
Q 038476           83 QMFRPNNFVFGQSRAGNNWAKGH  105 (108)
Q Consensus        83 ~lf~~~n~i~~~~gsgnNwa~Gy  105 (108)
                      -++.++  .+.-.|+|+||+.|.
T Consensus        65 i~iG~~--~t~G~GaG~~~~~G~   85 (349)
T TIGR00065        65 ILIGKK--LTRGLGAGGNPEIGR   85 (349)
T ss_pred             EEcCCC--CCCCCCCCCCHHHHH
Confidence            112111  122358999999885

This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	108
1z2b_B	445	Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai		1e-43
4drx_B	431	Gtp-Tubulin In Complex With A Darpin Length = 431		1e-43
3du7_B	445	Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai		1e-43
4f61_B	445	Tubulin:stathmin-Like Domain Complex Length = 445		1e-43
3ryc_B	445	Tubulin: Rb3 Stathmin-Like Domain Complex Length =		1e-43
4i4t_B	445	Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co		1e-43
1ffx_B	445	Tubulin:stathmin-Like Domain Complex Length = 445		1e-43
2xrp_A	445	Human Doublecortin N-Dc Repeat (1mjd) And Mammalian		1e-43
1tub_B	427	Tubulin Alpha-Beta Dimer, Electron Diffraction Leng		2e-43
4ffb_B	463	A Tog:alphaBETA-Tubulin Complex Structure Reveals C		6e-35
4i4t_A	450	Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co		2e-19
1z2b_A	448	Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai		2e-19
3hkb_A	451	Tubulin: Rb3 Stathmin-Like Domain Complex Length =		2e-19
4drx_A	437	Gtp-Tubulin In Complex With A Darpin Length = 437		2e-19
2xrp_B	452	Human Doublecortin N-Dc Repeat (1mjd) And Mammalian		2e-19
1ffx_A	451	Tubulin:stathmin-Like Domain Complex Length = 451		2e-19
1jff_A	451	Refined Structure Of Alpha-Beta Tubulin From Zinc-I		2e-19
1sa0_A	451	Tubulin-Colchicine: Stathmin-Like Domain Complex Le		2e-19
3ryc_A	451	Tubulin: Rb3 Stathmin-Like Domain Complex Length =		2e-19
1tub_A	440	Tubulin Alpha-Beta Dimer, Electron Diffraction Leng		2e-19
3du7_A	449	Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai		2e-19
4ffb_A	447	A Tog:alphaBETA-Tubulin Complex Structure Reveals C		5e-18
1z5v_A	474	Crystal Structure Of Human Gamma-Tubulin Bound To G		9e-18
3cb2_A	475	Crystal Structure Of Human Gamma-Tubulin Bound To G		9e-18
2btq_B	426	Structure Of Btubab Heterodimer From Prosthecobacte		1e-16
2bto_A	473	Structure Of Btuba From Prosthecobacter Dejongeii L		5e-13

>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 445

Iteration: 1
 Score =  171 bits (433), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 75/108 (69%), Positives = 90/108 (83%)
Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREI+HIQ GQCGNQIG+ FWEV+     + P   Y G+SDLQLER+ VYYN+A+  + V
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRA+L+DLEPGTMD+VRSGP+GQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin Length = 431

Iteration: 1
 Score =  171 bits (433), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 75/108 (69%), Positives = 90/108 (83%)
Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREI+HIQ GQCGNQIG+ FWEV+     + P   Y G+SDLQLER+ VYYN+A+  + V
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRA+L+DLEPGTMD+VRSGP+GQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 445

Iteration: 1
 Score =  171 bits (433), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 75/108 (69%), Positives = 90/108 (83%)
Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREI+HIQ GQCGNQIG+ FWEV+     + P   Y G+SDLQLER+ VYYN+A+  + V
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRA+L+DLEPGTMD+VRSGP+GQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445

Iteration: 1
 Score =  171 bits (433), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 75/108 (69%), Positives = 90/108 (83%)
Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREI+HIQ GQCGNQIG+ FWEV+     + P   Y G+SDLQLER+ VYYN+A+  + V
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRA+L+DLEPGTMD+VRSGP+GQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 445

Iteration: 1
 Score =  171 bits (432), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 75/108 (69%), Positives = 90/108 (83%)
Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREI+HIQ GQCGNQIG+ FWEV+     + P   Y G+SDLQLER+ VYYN+A+  + V
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRA+L+DLEPGTMD+VRSGP+GQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 445

Iteration: 1
 Score =  171 bits (432), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 75/108 (69%), Positives = 90/108 (83%)
Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREI+HIQ GQCGNQIG+ FWEV+     + P   Y G+SDLQLER+ VYYN+A+  + V
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRA+L+DLEPGTMD+VRSGP+GQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445

Iteration: 1
 Score =  171 bits (432), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 75/108 (69%), Positives = 90/108 (83%)
Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREI+HIQ GQCGNQIG+ FWEV+     + P   Y G+SDLQLER+ VYYN+A+  + V
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRA+L+DLEPGTMD+VRSGP+GQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 445

Iteration: 1
 Score =  171 bits (432), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 75/108 (69%), Positives = 90/108 (83%)
Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREI+HIQ GQCGNQIG+ FWEV+     + P   Y G+SDLQLER+ VYYN+A+  + V
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRA+L+DLEPGTMD+VRSGP+GQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 427

Iteration: 1
 Score =  170 bits (431), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 75/108 (69%), Positives = 90/108 (83%)
Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREI+HIQ GQCGNQIG+ FWEV+     + P   Y G+SDLQLER+ VYYN+A+  + V
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRA+L+DLEPGTMD+VRSGP+GQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 463

Iteration: 1
 Score =  142 bits (357), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 63/108 (58%), Positives = 82/108 (75%)
Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREI+HI  GQCGNQIG+ FWE +C    L     Y G+ D+Q ER+ VY+N+AS+G+ V
Sbjct: 1   MREIIHISTGQCGNQIGAAFWETICGEHGLDFNGTYHGHDDIQKERLNVYFNEASSGKWV 60
Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PR++ +DLEPGT+DAVR+   G +FRP+N++FGQS AGN WAKGHY E
Sbjct: 61  PRSINVDLEPGTIDAVRNSAIGNLFRPDNYIFGQSSAGNVWAKGHYTE 108

>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 450

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVL-----IPLAGYIGNSDLQLERVTVYYNKAS 55
           MRE + I  GQ G QIG+  WE+ C+   +     +P    IG  D   +    ++++  
Sbjct: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56  NGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
            G+ VPRAV +DLEP  +D VR+G Y Q+F P   + G+  A NN+A+GHY
Sbjct: 58  AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 108

>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 448

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVL-----IPLAGYIGNSDLQLERVTVYYNKAS 55
           MRE + I  GQ G QIG+  WE+ C+   +     +P    IG  D   +    ++++  
Sbjct: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56  NGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
            G+ VPRAV +DLEP  +D VR+G Y Q+F P   + G+  A NN+A+GHY
Sbjct: 58  AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 108

>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVL-----IPLAGYIGNSDLQLERVTVYYNKAS 55
           MRE + I  GQ G QIG+  WE+ C+   +     +P    IG  D   +    ++++  
Sbjct: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56  NGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
            G+ VPRAV +DLEP  +D VR+G Y Q+F P   + G+  A NN+A+GHY
Sbjct: 58  AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 108

>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin Length = 437

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVL-----IPLAGYIGNSDLQLERVTVYYNKAS 55
           MRE + I  GQ G QIG+  WE+ C+   +     +P    IG  D   +    ++++  
Sbjct: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56  NGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
            G+ VPRAV +DLEP  +D VR+G Y Q+F P   + G+  A NN+A+GHY
Sbjct: 58  AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 108

>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 452

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVL-----IPLAGYIGNSDLQLERVTVYYNKAS 55
           MRE + I  GQ G QIG+  WE+ C+   +     +P    IG  D   +    ++++  
Sbjct: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56  NGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
            G+ VPRAV +DLEP  +D VR+G Y Q+F P   + G+  A NN+A+GHY
Sbjct: 58  AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 108

>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex Length = 451

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVL-----IPLAGYIGNSDLQLERVTVYYNKAS 55
           MRE + I  GQ G QIG+  WE+ C+   +     +P    IG  D   +    ++++  
Sbjct: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56  NGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
            G+ VPRAV +DLEP  +D VR+G Y Q+F P   + G+  A NN+A+GHY
Sbjct: 58  AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 108

>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced Sheets Stabilized With Taxol Length = 451

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVL-----IPLAGYIGNSDLQLERVTVYYNKAS 55
           MRE + I  GQ G QIG+  WE+ C+   +     +P    IG  D   +    ++++  
Sbjct: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56  NGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
            G+ VPRAV +DLEP  +D VR+G Y Q+F P   + G+  A NN+A+GHY
Sbjct: 58  AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 108

>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex Length = 451

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVL-----IPLAGYIGNSDLQLERVTVYYNKAS 55
           MRE + I  GQ G QIG+  WE+ C+   +     +P    IG  D   +    ++++  
Sbjct: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56  NGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
            G+ VPRAV +DLEP  +D VR+G Y Q+F P   + G+  A NN+A+GHY
Sbjct: 58  AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 108

>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVL-----IPLAGYIGNSDLQLERVTVYYNKAS 55
           MRE + I  GQ G QIG+  WE+ C+   +     +P    IG  D   +    ++++  
Sbjct: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56  NGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
            G+ VPRAV +DLEP  +D VR+G Y Q+F P   + G+  A NN+A+GHY
Sbjct: 58  AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 108

>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 440

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVL-----IPLAGYIGNSDLQLERVTVYYNKAS 55
           MRE + I  GQ G QIG+  WE+ C+   +     +P    IG  D   +    ++++  
Sbjct: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56  NGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
            G+ VPRAV +DLEP  +D VR+G Y Q+F P   + G+  A NN+A+GHY
Sbjct: 58  AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 108

>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 449

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVL-----IPLAGYIGNSDLQLERVTVYYNKAS 55
           MRE + I  GQ G QIG+  WE+ C+   +     +P    IG  D   +    ++++  
Sbjct: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56  NGRSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
            G+ VPRAV +DLEP  +D VR+G Y Q+F P   + G+  A NN+A+GHY
Sbjct: 58  AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHY 108

>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 447

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/109 (36%), Positives = 62/109 (56%), Gaps = 3/109 (2%)
Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIP---LAGYIGNSDLQLERVTVYYNKASNG 57
           MRE++ I  GQ G QIG+  WE+  +   + P   L   +       E  + ++++   G
Sbjct: 1   MREVISINVGQAGCQIGNACWELYSLEHGIKPDGHLEDGLSKPKGGEEGFSTFFHETGYG 60
Query: 58  RSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
           + VPRA+ +DLEP  +D VR+GPY  +F P   + G+  A NN+A+GHY
Sbjct: 61  KFVPRAIYVDLEPNVIDEVRNGPYKDLFHPEQLISGKEDAANNYARGHY 109

>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gtpgammas Length = 474

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 2/105 (1%)
Query: 2   REILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVP 61
           REI+ +Q GQCGNQIG  FW+ +C    + P A     +    +R  V++ +A +   +P
Sbjct: 3   REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIP 62
Query: 62  RAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQ--SRAGNNWAKG 104
           RAVL+DLEP  + ++ + PY +++ P N    +    AGNNWA G
Sbjct: 63  RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG 107

>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp Length = 475

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 2/105 (1%)
Query: 2   REILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVP 61
           REI+ +Q GQCGNQIG  FW+ +C    + P A     +    +R  V++ +A +   +P
Sbjct: 3   REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIP 62
Query: 62  RAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQ--SRAGNNWAKG 104
           RAVL+DLEP  + ++ + PY +++ P N    +    AGNNWA G
Sbjct: 63  RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG 107

>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter Dejongeii Length = 426

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 64/110 (58%), Gaps = 3/110 (2%)
Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYI--GNSDLQLERVTVYYNKASNGR 58
           +REIL I  GQCGNQI  +FW +      L   AG +  G++      + V+++K  +G+
Sbjct: 1   VREILSIHVGQCGNQIADSFWRLALREHGLTE-AGTLKEGSNAAANSNMEVFFHKVRDGK 59
Query: 59  SVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
            VPRAVL+DLEPG +  +  G   Q+F  ++ V     A NNWA+G+ +E
Sbjct: 60  YVPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAANNWARGYNVE 109

>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii Length = 473

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 10  GQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNK---ASNGRSVPRAVLM 66
           GQ GNQI ++FW+ VC+   + PL G            + +++K   +S+G  VPRA+++
Sbjct: 12  GQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGSYVPRAIMV 71
Query: 67  DLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGH 105
           DLEP  +D V++   G +F P N +     AG N+A G+
Sbjct: 72  DLEPSVIDNVKATS-GSLFNPANLISRTEGAGGNFAVGY 109

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	108
3ryc_B	445	Tubulin beta chain; alpha-tubulin, beta-tubulin, G	5e-50
3ryc_A	451	Tubulin alpha chain; alpha-tubulin, beta-tubulin,	3e-49
2btq_B	426	Tubulin btubb; structural protein, cytoskeletal pr	4e-47
3cb2_A	475	Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m	8e-44
2bto_A	473	Tubulin btuba; bacterial tubulin, polymerization,	5e-43

>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445

 Score =  162 bits (413), Expect = 5e-50
 Identities = 75/108 (69%), Positives = 90/108 (83%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREI+HIQ GQCGNQIG+ FWEV+     + P   Y G+SDLQLER+ VYYN+A+  + V
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60

Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRA+L+DLEPGTMD+VRSGP+GQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451

 Score =  161 bits (408), Expect = 3e-49
 Identities = 40/108 (37%), Positives = 61/108 (56%), Gaps = 2/108 (1%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQ--LERVTVYYNKASNGR 58
           MRE + I  GQ G QIG+  WE+ C+   + P      +  +    +    ++++   G+
Sbjct: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 59  SVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
            VPRAV +DLEP  +D VR+G Y Q+F P   + G+  A NN+A+GHY
Sbjct: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 108

>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426

 Score =  154 bits (392), Expect = 4e-47
 Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 1/109 (0%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYI-GNSDLQLERVTVYYNKASNGRS 59
           +REIL I  GQCGNQI  +FW +      L        G++      + V+++K  +G+ 
Sbjct: 1   VREILSIHVGQCGNQIADSFWRLALREHGLTEAGTLKEGSNAAANSNMEVFFHKVRDGKY 60

Query: 60  VPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           VPRAVL+DLEPG +  +  G   Q+F  ++ V     A NNWA+G+ +E
Sbjct: 61  VPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAANNWARGYNVE 109

>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475

 Score =  147 bits (372), Expect = 8e-44
 Identities = 40/108 (37%), Positives = 61/108 (56%), Gaps = 2/108 (1%)

Query: 2   REILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVP 61
           REI+ +Q GQCGNQIG  FW+ +C    + P A     +    +R  V++ +A +   +P
Sbjct: 3   REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIP 62

Query: 62  RAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQ--SRAGNNWAKGHYI 107
           RAVL+DLEP  + ++ + PY +++ P N    +    AGNNWA G   
Sbjct: 63  RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQ 110

>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473

 Score =  144 bits (366), Expect = 5e-43
 Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 4/111 (3%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNK---ASNG 57
           +   + +  GQ GNQI ++FW+ VC+   + PL G            + +++K   +S+G
Sbjct: 3   VNNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSG 62

Query: 58  RSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
             VPRA+++DLEP  +D V++   G +F P N +     AG N+A G+   
Sbjct: 63  SYVPRAIMVDLEPSVIDNVKAT-SGSLFNPANLISRTEGAGGNFAVGYLGA 112

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	108
3ryc_B	445	Tubulin beta chain; alpha-tubulin, beta-tubulin, G	100.0
3ryc_A	451	Tubulin alpha chain; alpha-tubulin, beta-tubulin,	100.0
2btq_B	426	Tubulin btubb; structural protein, cytoskeletal pr	100.0
3cb2_A	475	Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m	100.0
2bto_A	473	Tubulin btuba; bacterial tubulin, polymerization,	100.0
1w5f_A	353	Cell division protein FTSZ; complete proteome, GTP	98.89
1ofu_A	320	FTSZ, cell division protein FTSZ; bacterial cell d	98.83
2vaw_A	394	FTSZ, cell division protein FTSZ; bacterial cell d	98.78
1rq2_A	382	Cell division protein FTSZ; cell cycle, tubulin, G	98.74
3m89_A	427	FTSZ/tubulin-related protein; partition, TUBZ, GTP	98.6
2vap_A	364	FTSZ, cell division protein FTSZ homolog 1; polyme	98.49
2vxy_A	382	FTSZ, cell division protein FTSZ; GTP-binding, nuc	98.46
2r75_1	338	Cell division protein FTSZ; GTPase, tubulin-like,	98.22
4ei7_A	389	Plasmid replication protein REPX; GTP hydrolase, p	92.88
3v3t_A	360	Cell division GTPase FTSZ, diverged; TUBZ, tubulin	88.52
4dxd_A	396	Cell division protein FTSZ; rossmann fold, GTPase,	85.65

>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ...

Probab=100.00  E-value=7.5e-48  Score=298.28  Aligned_cols=108  Identities=69%  Similarity=1.247  Sum_probs=105.0

Q ss_pred             CEeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccC
Q 038476            1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGP   80 (108)
Q Consensus         1 m~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~   80 (108)
                      |||||+||+||||||||.+||+++|+||+|+++|.+.++++.+.+++++||+|+..++||||||||||||+||++|++++
T Consensus         1 mrEii~i~vGQcGnQiG~~~We~~~~EHgi~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRavlvDlEp~vid~i~~g~   80 (445)
T 3ryc_B            1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGP   80 (445)
T ss_dssp             CCEEEEEEEHHHHHHHHHHHHHHHHHHTTBCTTSBBCCSCTHHHHTGGGTEEECSTTBEEECEEEEESSSHHHHHHHTST
T ss_pred             CceEEEEecCCcHHHHHHHHHHHHHHHhCCCCCCCccCCccccccchhhccccCCCCccccceeEecCCchhhhhhhccc
Confidence            99999999999999999999999999999999999998888888899999999999999999999999999999999999


Q ss_pred             CCCCCCCCceEeccCCCCcccccccccC
Q 038476           81 YGQMFRPNNFVFGQSRAGNNWAKGHYIE  108 (108)
Q Consensus        81 ~~~lf~~~n~i~~~~gsgnNwa~Gyy~~  108 (108)
                      ++.||+|+|++++|+|||||||+||||+
T Consensus        81 ~~~lf~p~~~i~g~~gAgNN~A~G~yt~  108 (445)
T 3ryc_B           81 FGQIFRPDNFVFGQSGAGNNWAKGHYTE  108 (445)
T ss_dssp             TGGGSCGGGEEECSSCCTTCHHHHHHSH
T ss_pred             ccceecccceEEccccccCCccccchhh
Confidence            9999999999999999999999999973

>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ...

Probab=100.00  E-value=9.9e-48  Score=297.99  Aligned_cols=108  Identities=37%  Similarity=0.754  Sum_probs=100.3

Q ss_pred             CEeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcc--cccceeeeEeecCCCCcccceeEecCCCCcccceec
Q 038476            1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDL--QLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRS   78 (108)
Q Consensus         1 m~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~--~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~   78 (108)
                      |||||+||+||||||||.+||+++|.||+|+++|.+.++++.  +.+++++||+|+..++||||||||||||+||++|++
T Consensus         1 mrEii~iqvGQcGnQIG~~~We~~~~EHgi~~~g~~~~~~~~~~~~~~~~~fF~e~~~gk~vPRavlvDlEp~vid~v~~   80 (451)
T 3ryc_A            1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT   80 (451)
T ss_dssp             CCCEEEEEEHHHHHHHHHHHHHHHHHHHTCCTTSCCCCC-------CGGGGTEEECTTSCEEESEEEEESSSHHHHHHHH
T ss_pred             CceEEEEeccCchhHHHHHHHHHHHhhcCCCCCCCcCCcccccccccchhhhcccCCCCccccceeeecCCcchhheeee
Confidence            999999999999999999999999999999999998876653  478899999999999999999999999999999999


Q ss_pred             cCCCCCCCCCceEeccCCCCcccccccccC
Q 038476           79 GPYGQMFRPNNFVFGQSRAGNNWAKGHYIE  108 (108)
Q Consensus        79 ~~~~~lf~~~n~i~~~~gsgnNwa~Gyy~~  108 (108)
                      ++++.||+|+|++++|+|||||||+||||+
T Consensus        81 g~~~~lf~p~~~i~gk~gAgNNwA~G~yt~  110 (451)
T 3ryc_A           81 GTYRQLFHPEQLITGKEDAANNYARGHYTI  110 (451)
T ss_dssp             STTTTTSCGGGEEECSSCCTTCHHHHHHTS
T ss_pred             cccccccCHHHeeeccccccCCCCeeeccc
Confidence            999999999999999999999999999984

>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii}

Probab=100.00  E-value=3.8e-41  Score=259.99  Aligned_cols=107  Identities=37%  Similarity=0.671  Sum_probs=85.7

Q ss_pred             CEeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCC-cccccceeeeEeecCCCCcccceeEecCCCCcccceecc
Q 038476            1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNS-DLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSG   79 (108)
Q Consensus         1 m~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~-~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~   79 (108)
                      |||||+||+||||||||.+||++++.||+++++|.+.+++ +.+.+++++||+|+..++|+||||+|||||++|++++.+
T Consensus         1 MrEii~iq~GQ~GnqIg~~fW~~~~~ehgi~~~g~~~~~~~~~~~~~~~~fF~e~~~~~yvPRav~vDle~~~l~~i~~~   80 (426)
T 2btq_B            1 VREILSIHVGQCGNQIADSFWRLALREHGLTEAGTLKEGSNAAANSNMEVFFHKVRDGKYVPRAVLVDLEPGVIARIEGG   80 (426)
T ss_dssp             -CEEEEEEEHHHHHHHHHHHHHHHHHHHTBCTTSBBCC-------CCCTTTEEEEETTEEEECEEEEEECC---------
T ss_pred             CCcEEEEecCCcHhHHHHHHHHHHHHHcCCCCCCCccCcccccccccccceeeecCCCceeeeeEEEecCcccccccccc
Confidence            9999999999999999999999999999999999988766 556788999999999999999999999999999999999


Q ss_pred             CCCCCCCCCceEeccCCCCccccccccc
Q 038476           80 PYGQMFRPNNFVFGQSRAGNNWAKGHYI  107 (108)
Q Consensus        80 ~~~~lf~~~n~i~~~~gsgnNwa~Gyy~  107 (108)
                      +++.+|+|++++.+++|||||||+|||+
T Consensus        81 ~~~~lf~p~~i~~g~~gAgnn~a~G~~~  108 (426)
T 2btq_B           81 DMSQLFDESSIVRKIPGAANNWARGYNV  108 (426)
T ss_dssp             ---CCCCTTSEEECCSCCTTCHHHHHTH
T ss_pred             ccccccCcccccccccCccCcccccccc
Confidence            9999999999999999999999999986

>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A*

Probab=100.00  E-value=2.8e-40  Score=257.86  Aligned_cols=105  Identities=38%  Similarity=0.751  Sum_probs=99.3

Q ss_pred             CEeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccC
Q 038476            1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGP   80 (108)
Q Consensus         1 m~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~   80 (108)
                      |||||+||+||||||||.+||++++.||+++++|.+.+..+.+.+++++||+|++.++|+||||||||||++|+++++++
T Consensus         2 ~rEiItiqvGQ~GnqIG~~fWe~~~~Ehgi~~~g~~~~~~~~~~~~~~vfF~e~~~~~yvPRavlvDLEp~vid~i~~~~   81 (475)
T 3cb2_A            2 PREIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSP   81 (475)
T ss_dssp             CCCEEEEEEHHHHHHHHHHHHHHHHHHTTBCTTSCBCTTCCTTSSCGGGTEEECTTSCEEECEEEEESSSHHHHHHHHST
T ss_pred             CccEEEEecCCcHHHHHHHHHHHHHHhcCCCCCCCCcCcccccccccceeeeecCCCceecceeEecCCcceeeeecccc
Confidence            79999999999999999999999999999999999877655566789999999999999999999999999999999999


Q ss_pred             CCCCCCCCceEeccC--CCCccccccc
Q 038476           81 YGQMFRPNNFVFGQS--RAGNNWAKGH  105 (108)
Q Consensus        81 ~~~lf~~~n~i~~~~--gsgnNwa~Gy  105 (108)
                      ++.+|+|+|++++++  |||||||+||
T Consensus        82 ~~~lf~p~~~i~g~~g~gAgnn~a~G~  108 (475)
T 3cb2_A           82 YAKLYNPENIYLSEHGGGAGNNWASGF  108 (475)
T ss_dssp             TTTTSCGGGEEECCTTCCCTTCHHHHH
T ss_pred             ccccCCccceeecccccCCCCCchhhh
Confidence            999999999999998  7999999996

>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A*

Probab=100.00  E-value=3.5e-40  Score=257.28  Aligned_cols=105  Identities=31%  Similarity=0.612  Sum_probs=98.2

Q ss_pred             CEeEEEEecCchHHHHHHHHHHHHHhhcCCCCC-CceeCCCcccccceeeeEe---ecCCCCcccceeEecCCCCcccce
Q 038476            1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPL-AGYIGNSDLQLERVTVYYN---KASNGRSVPRAVLMDLEPGTMDAV   76 (108)
Q Consensus         1 m~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~-g~~~~~~~~~~~~~~~fF~---e~~~~~~vpRailiD~ep~~i~~i   76 (108)
                      |||||+||+||||||||.+||++++.||+|+++ |.+.++++. .+++++||+   |+..++||||||+|||||++|+.+
T Consensus         3 mrEii~iqvGQcGnqIG~~~We~~~~Ehgi~~~~g~~~~~~~~-~~~~~~fF~~~~e~~~~~~vpRav~vDlep~vi~~i   81 (473)
T 2bto_A            3 VNNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAP-RGNWSSFFSKLGESSSGSYVPRAIMVDLEPSVIDNV   81 (473)
T ss_dssp             CCEEEEEEEHHHHHHHHHHHHHHHHHHHTCCTTTCCCSSSCCC-SSSGGGTEEECSCC--CCEEECEEEEESSSHHHHHH
T ss_pred             cccEEEEecCCcHHHHHHHHHHHHHHhcCCCCCCCeecCCCcc-cccccceecccccccCCceeeeeeEecCcchhhhhh
Confidence            999999999999999999999999999999999 998876665 678999999   999999999999999999999999


Q ss_pred             eccCCCCCCCCCceEeccCCCCccccccccc
Q 038476           77 RSGPYGQMFRPNNFVFGQSRAGNNWAKGHYI  107 (108)
Q Consensus        77 ~~~~~~~lf~~~n~i~~~~gsgnNwa~Gyy~  107 (108)
                      +.++ +.+|.|++++++++|||||||+|||+
T Consensus        82 ~~~~-~~lf~p~~~it~~~GAgnn~a~G~~~  111 (473)
T 2bto_A           82 KATS-GSLFNPANLISRTEGAGGNFAVGYLG  111 (473)
T ss_dssp             HHHS-TTCSCGGGEEECSSCCTTCHHHHHTS
T ss_pred             hccc-cccccccceEecccCCCCCcCCCcch
Confidence            9988 89999999999999999999999986

>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1

Probab=98.89  E-value=4.6e-10  Score=84.83  Aligned_cols=64  Identities=19%  Similarity=0.159  Sum_probs=49.2

Q ss_pred             CEeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccC
Q 038476            1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGP   80 (108)
Q Consensus         1 m~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~   80 (108)
                      |++|++|+|||||+|++..||+     |+++  |                          ++.+.+|+|.+.++.++.  
T Consensus        21 ~~~I~vIGvGg~G~n~vn~m~~-----~gi~--g--------------------------v~~ia~nTD~q~L~~~~a--   65 (353)
T 1w5f_A           21 NLKIKVIGVGGAGNNAINRMIE-----IGIH--G--------------------------VEFVAVNTDLQVLEASNA--   65 (353)
T ss_dssp             -CCEEEEEEHHHHHHHHHHHHH-----HCCT--T--------------------------EEEEEEESCHHHHHTCCC--
T ss_pred             CCEEEEECcCchHHHHHHHHHH-----hCCC--C--------------------------CCEEEEcCCHHHHhcCCC--
Confidence            5789999999999999999998     5542  1                          366888988887776532  


Q ss_pred             CCCCCCCCceEecc-----CCCCccccccc
Q 038476           81 YGQMFRPNNFVFGQ-----SRAGNNWAKGH  105 (108)
Q Consensus        81 ~~~lf~~~n~i~~~-----~gsgnNwa~Gy  105 (108)
                            |+.+..++     .||||||+.|+
T Consensus        66 ------~~~i~iG~~~t~G~GAG~n~~~G~   89 (353)
T 1w5f_A           66 ------DVKIQIGENITRGLGAGGRPEIGE   89 (353)
T ss_dssp             ------SEEEECCTTTTTTSCCTTCHHHHH
T ss_pred             ------CcEEEccCcccCCCCCCCChHHHH
Confidence                  45566655     49999999995

>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1

Probab=98.83  E-value=1.6e-09  Score=80.91  Aligned_cols=62  Identities=15%  Similarity=0.140  Sum_probs=48.9

Q ss_pred             eEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCCC
Q 038476            3 EILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYG   82 (108)
Q Consensus         3 eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~~   82 (108)
                      +|++|+|||||+|++..||+     |+++  |                          ++.+.+|+|++.++.++     
T Consensus        13 ~I~viGvGg~G~n~v~~m~~-----~gi~--g--------------------------v~~i~~ntD~q~L~~~~-----   54 (320)
T 1ofu_A           13 VIKVIGVGGGGGNAVNHMAK-----NNVE--G--------------------------VEFICANTDAQALKNIA-----   54 (320)
T ss_dssp             CEEEEEEHHHHHHHHHHHHH-----TTCC--S--------------------------EEEEEEESBTGGGSSCS-----
T ss_pred             EEEEECcCchHHHHHHHHHH-----hCCC--C--------------------------CCEEEEcCCHHHHhcCC-----
Confidence            69999999999999999998     5542  1                          36788999988887664     


Q ss_pred             CCCCCCceEecc-----CCCCccccccc
Q 038476           83 QMFRPNNFVFGQ-----SRAGNNWAKGH  105 (108)
Q Consensus        83 ~lf~~~n~i~~~-----~gsgnNwa~Gy  105 (108)
                         .|+.+..++     .||||||+.|+
T Consensus        55 ---a~~~i~iG~~~t~g~GAG~n~~~G~   79 (320)
T 1ofu_A           55 ---ARTVLQLGPGVTKGLGAGANPEVGR   79 (320)
T ss_dssp             ---CSEEEECCHHHHTTBCCCSCHHHHH
T ss_pred             ---CCcEEEccCCccCCCCCCCCHHHHH
Confidence               245566654     59999999996

>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1

Probab=98.78  E-value=3e-09  Score=81.43  Aligned_cols=63  Identities=14%  Similarity=0.135  Sum_probs=49.5

Q ss_pred             EeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCC
Q 038476            2 REILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPY   81 (108)
Q Consensus         2 ~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~   81 (108)
                      .+|++|+|||||++++..||+     |+++  |                          .+.|.+|+|.+.++.+.    
T Consensus        12 ~~I~vIGvGg~G~n~vn~m~~-----~gi~--g--------------------------v~fia~NTD~q~L~~~~----   54 (394)
T 2vaw_A           12 AVIKVIGVGGGGGNAVNHMAK-----NNVE--G--------------------------VEFICANTDAQALKNIA----   54 (394)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHT-----TTCC--S--------------------------EEEEEEESCTTTTSSCS----
T ss_pred             CEEEEECcCchHHHHHHHHHH-----cCCC--C--------------------------CCEEEecCCHHHHhcCC----
Confidence            479999999999999999998     5541  1                          36788999988877553    


Q ss_pred             CCCCCCCceEecc-----CCCCccccccc
Q 038476           82 GQMFRPNNFVFGQ-----SRAGNNWAKGH  105 (108)
Q Consensus        82 ~~lf~~~n~i~~~-----~gsgnNwa~Gy  105 (108)
                          .|+.+..++     .||||||+.|+
T Consensus        55 ----a~~ki~iG~~~t~G~GAG~n~~~G~   79 (394)
T 2vaw_A           55 ----ARTVLQLGPGVTKGLGAGANPEVGR   79 (394)
T ss_dssp             ----SSCEEECCHHHHSSSCCCSCHHHHH
T ss_pred             ----CCcEEEccccccCCCCCCCCHHHHH
Confidence                245666664     59999999996

>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A*

Probab=98.74  E-value=2.5e-09  Score=81.57  Aligned_cols=63  Identities=14%  Similarity=0.101  Sum_probs=46.5

Q ss_pred             EeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCC
Q 038476            2 REILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPY   81 (108)
Q Consensus         2 ~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~   81 (108)
                      .+|++|+|||||++++..||+     |+++  |                          ++.|.+|+|.+.++.++    
T Consensus        12 ~~I~vIGvGg~G~n~vn~m~~-----~gi~--g--------------------------v~fia~NTD~q~L~~~~----   54 (382)
T 1rq2_A           12 AVIKVVGIGGGGVNAVNRMIE-----QGLK--G--------------------------VEFIAINTDAQALLMSD----   54 (382)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHH-----TTCC--S--------------------------EEEEEEESCHHHHHHCC----
T ss_pred             CEEEEECcCchHHHHHHHHHH-----hCCC--C--------------------------CCEEEecCCHHHHhcCC----
Confidence            479999999999999999998     5542  1                          36788999988877664    


Q ss_pred             CCCCCCCceEecc-----CCCCccccccc
Q 038476           82 GQMFRPNNFVFGQ-----SRAGNNWAKGH  105 (108)
Q Consensus        82 ~~lf~~~n~i~~~-----~gsgnNwa~Gy  105 (108)
                          .|+.+..++     .||||||+.|+
T Consensus        55 ----a~~~i~iG~~~t~G~GAG~n~~~G~   79 (382)
T 1rq2_A           55 ----ADVKLDVGRDSTRGLGAGADPEVGR   79 (382)
T ss_dssp             ----CSEEEECCTTTC-----CCCHHHHH
T ss_pred             ----CCcEEEecccccCCCCCCCChHHHH
Confidence                244455554     59999999996

>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*

Probab=98.60  E-value=1.2e-08  Score=78.64  Aligned_cols=70  Identities=17%  Similarity=0.096  Sum_probs=44.1

Q ss_pred             EEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCCCC
Q 038476            4 ILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYGQ   83 (108)
Q Consensus         4 ii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~~~   83 (108)
                      |..|-|||+|+.+...|.+     +++                        ..++++||+|+||+|+.+++.++..+.  
T Consensus        45 i~VIGvGg~G~n~v~~m~~-----~~~------------------------~~g~~~~~~iavNtd~~dl~~L~~~~~--   93 (427)
T 3m89_A           45 WGVIGAGQKGNKEADLFAG-----YKF------------------------SNGTTCYPTLAVNFAESDMMHLQNIIK--   93 (427)
T ss_dssp             EEEEEEHHHHHHHHHHHTT-----CBC------------------------TTSCBSCCEEEEESSGGGGTTCSSSCG--
T ss_pred             EEEEEECCcHHHHHHHHHH-----hCc------------------------ccCCcCceEEEEECCHHHHHHHhcCCC--
Confidence            6789999999998776532     211                        135678999999999999999877653  


Q ss_pred             CCCCCce-EeccCCCCccccccccc
Q 038476           84 MFRPNNF-VFGQSRAGNNWAKGHYI  107 (108)
Q Consensus        84 lf~~~n~-i~~~~gsgnNwa~Gyy~  107 (108)
                         ++.+ +.++.||||||++||++
T Consensus        94 ---~~~i~l~G~~GAG~np~~G~~~  115 (427)
T 3m89_A           94 ---EDRIHFDGLKGAARTPSVVTDL  115 (427)
T ss_dssp             ---GGEEEC-----------CHHHH
T ss_pred             ---cceEEecCCCCCCCCHHHHHHH
Confidence               3454 56889999999999875

>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A*

Probab=98.49  E-value=3.8e-08  Score=74.60  Aligned_cols=63  Identities=16%  Similarity=0.228  Sum_probs=45.2

Q ss_pred             EeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCC
Q 038476            2 REILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPY   81 (108)
Q Consensus         2 ~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~   81 (108)
                      .+|++|+||||||+++..||+.     +++  |              +            ..+.+|+|.+.++.++.   
T Consensus        38 ~~I~vIGvGg~G~n~v~~m~~~-----gi~--g--------------v------------~fia~NTD~q~L~~~~a---   81 (364)
T 2vap_A           38 AKITVVGCGGAGNNTITRLKME-----GIE--G--------------A------------KTVAINTDAQQLIRTKA---   81 (364)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHH-----TCT--T--------------E------------EEEEEESBHHHHHTSCC---
T ss_pred             CeEEEEeeCchHHHHHHHHHHh-----CCC--C--------------C------------CEEEEcCcHHHHhcCCC---
Confidence            3699999999999999999983     331  1              0            24677777777665532   


Q ss_pred             CCCCCCCceEecc-----CCCCccccccc
Q 038476           82 GQMFRPNNFVFGQ-----SRAGNNWAKGH  105 (108)
Q Consensus        82 ~~lf~~~n~i~~~-----~gsgnNwa~Gy  105 (108)
                           |+.+..++     .|||||||+|.
T Consensus        82 -----~~ki~iG~~~t~G~GAGnn~a~G~  105 (364)
T 2vap_A           82 -----DKKILIGKKLTRGLGAGGNPKIGE  105 (364)
T ss_dssp             -----SEEEECCTTTTTTBCCTTCHHHHH
T ss_pred             -----CcEEEeccccccCCCCCCChHHHH
Confidence                 34455544     59999999984

>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A*

Probab=98.46  E-value=3.9e-08  Score=74.96  Aligned_cols=63  Identities=17%  Similarity=0.207  Sum_probs=48.3

Q ss_pred             EeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCC
Q 038476            2 REILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPY   81 (108)
Q Consensus         2 ~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~   81 (108)
                      .+|++|+|||||+++...+|+     |+++  |                          ++.|.+|+|...++.+..   
T Consensus        12 ~~I~vIGvGg~G~navn~m~~-----~gi~--g--------------------------v~fia~NTD~q~L~~~~a---   55 (382)
T 2vxy_A           12 ASIKVIGVGGGGNNAVNRMIE-----NEVQ--G--------------------------VEYIAVNTDAQALNLSKA---   55 (382)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHH-----TTCC--S--------------------------CEEEEEESBHHHHHTCCC---
T ss_pred             CEEEEEeeCchHHHHHHHHHH-----hCCC--C--------------------------CCEEEEeCCHHHHhcCCC---
Confidence            469999999999999999998     4432  1                          467889998888776542   


Q ss_pred             CCCCCCCceEecc-----CCCCccccccc
Q 038476           82 GQMFRPNNFVFGQ-----SRAGNNWAKGH  105 (108)
Q Consensus        82 ~~lf~~~n~i~~~-----~gsgnNwa~Gy  105 (108)
                           |+.+..++     .||||||+.|+
T Consensus        56 -----~~ki~iG~~~t~G~GAGnn~a~G~   79 (382)
T 2vxy_A           56 -----EVKMQIGAKLTRGLGAGANPEVGK   79 (382)
T ss_dssp             -----SEEEECCHHHHTTBCCTTCHHHHH
T ss_pred             -----CcEEEecccccCCCCCCCChHHHH
Confidence                 34455553     59999999985

>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1*

Probab=98.22  E-value=3.9e-07  Score=68.38  Aligned_cols=62  Identities=19%  Similarity=0.299  Sum_probs=48.8

Q ss_pred             eEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCCC
Q 038476            3 EILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYG   82 (108)
Q Consensus         3 eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~~   82 (108)
                      .|..|.|||||+++...+|+     ++++                         +   ++.|.+|+|+..++....    
T Consensus         9 ~I~viGvGg~G~n~vn~m~~-----~~~~-------------------------g---v~~ia~NTD~q~L~~~~a----   51 (338)
T 2r75_1            9 KIKVIGVGGGGSNAVNRMYE-----DGIE-------------------------G---VELYAINTDVQHLSTLKV----   51 (338)
T ss_dssp             CEEEEEEHHHHHHHHHHHHH-----TTCC-------------------------S---CEEEEEESBHHHHHTCCC----
T ss_pred             eEEEEeeCccHHHHHHHHHH-----hCCC-------------------------C---ceEEEEECCHHHHhcCCC----
Confidence            48899999999999999997     3220                         1   588999999998886532    


Q ss_pred             CCCCCCceEecc-----CCCCccccccc
Q 038476           83 QMFRPNNFVFGQ-----SRAGNNWAKGH  105 (108)
Q Consensus        83 ~lf~~~n~i~~~-----~gsgnNwa~Gy  105 (108)
                          |+.+..++     .|||||||.|+
T Consensus        52 ----~~ki~iG~~~t~g~GAGnn~a~G~   75 (338)
T 2r75_1           52 ----PNKIQIGEKVTRGLGAGAKPEVGE   75 (338)
T ss_dssp             ----SEEEECCHHHHTTBCCTTCHHHHH
T ss_pred             ----CcEEEecCcccCCCCCCCChHHHH
Confidence                45666665     89999999984

>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A*

Probab=92.88  E-value=0.061  Score=40.85  Aligned_cols=72  Identities=14%  Similarity=0.127  Sum_probs=45.0

Q ss_pred             EEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCCCC
Q 038476            4 ILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYGQ   83 (108)
Q Consensus         4 ii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~~~   83 (108)
                      |..|-+||||+.|-..|.+     +..                      +.....+..++|.|+++...+..+...   .
T Consensus        18 i~vIGvGgaG~~ivd~~~~-----~~~----------------------~~~~~~~~~~~iaiNTd~~~L~~~~~~---~   67 (389)
T 4ei7_A           18 FGFLGLGMGGCAIAAECAN-----KET----------------------QIKNNKYPYRAILVNTNSQDFNKIEIK---N   67 (389)
T ss_dssp             EEEEEEHHHHHHHHHHHHT-----CCC----------------------CCTTCSCCCEEEEEECCCHHHHHSCCC---S
T ss_pred             EEEEEECCchHHHHHHHHh-----ccc----------------------ccccccccccEEEEECCHHHHhhccCc---c
Confidence            6789999999999877653     111                      011122345889999998877765322   1


Q ss_pred             CCCCCceEecc--CCCCccccccc
Q 038476           84 MFRPNNFVFGQ--SRAGNNWAKGH  105 (108)
Q Consensus        84 lf~~~n~i~~~--~gsgnNwa~Gy  105 (108)
                      .......++..  .|+|+||..|+
T Consensus        68 ~~~~g~~~~~g~g~GaG~~p~~G~   91 (389)
T 4ei7_A           68 TGNVRKIQLEGYEQGAARNPQVGE   91 (389)
T ss_dssp             CSSEEEEECTTCCCTTCCCHHHHH
T ss_pred             hhhhhhhccCCCCCCCCCChHHHH
Confidence            12223333332  49999999886

>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C}

Probab=88.52  E-value=0.17  Score=38.22  Aligned_cols=62  Identities=15%  Similarity=0.206  Sum_probs=35.2

Q ss_pred             EEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCCCC
Q 038476            4 ILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYGQ   83 (108)
Q Consensus         4 ii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~~~   83 (108)
                      |..|-||++|+.+-..+.+.     +.   +                          -.+|.+++|...+..+...    
T Consensus         7 I~VIGvGGaG~Nav~~m~~~-----~~---~--------------------------v~~iaiNTD~q~L~~~~~~----   48 (360)
T 3v3t_A            7 IVFAPIGQGGGNIVDTLLGI-----CG---D--------------------------YNALFINTSKKDLDSLKHA----   48 (360)
T ss_dssp             EEEEEBSHHHHHHHHHHHHH-----CT---T--------------------------SEECEEESCHHHHHTCSSC----
T ss_pred             EEEEEeCCcHHHHHHHHHHc-----CC---C--------------------------ceEEEEECCHHHHhhCCCC----
Confidence            77899999999998877541     10   0                          1346777777666654321    


Q ss_pred             CCCCCceEeccCCCCccccccc
Q 038476           84 MFRPNNFVFGQSRAGNNWAKGH  105 (108)
Q Consensus        84 lf~~~n~i~~~~gsgnNwa~Gy  105 (108)
                        +.+-.+....|||+||+.|+
T Consensus        49 --~~ki~ig~GlGAG~np~vG~   68 (360)
T 3v3t_A           49 --KHTYHIPYAEGCGKERKKAV   68 (360)
T ss_dssp             --SCEEECC------CCHHHHH
T ss_pred             --ccEEEcCCCCCCCCCHHHHH
Confidence              11112224579999999996

>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A*

Probab=85.65  E-value=0.53  Score=35.93  Aligned_cols=62  Identities=15%  Similarity=0.187  Sum_probs=40.0

Q ss_pred             eEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccCCC
Q 038476            3 EILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGPYG   82 (108)
Q Consensus         3 eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~~~   82 (108)
                      -|..|-||+||+.+-..+.+.     ++.                .            ...|.+++|...+....     
T Consensus        19 ~IkVIGVGG~G~NaVn~m~~~-----~~~----------------g------------vefiaiNTD~qaL~~s~-----   60 (396)
T 4dxd_A           19 TLKVIGVGGGGNNAVNRMIDH-----GMN----------------N------------VEFIAINTDGQALNLSK-----   60 (396)
T ss_dssp             CEEEEEEHHHHHHHHHHHHHH-----CCC----------------S------------EEEEEEESCHHHHHTCC-----
T ss_pred             eEEEEEECCcHHHHHHHHHHh-----CCC----------------C------------ceEEEEECCHHHHhcCC-----
Confidence            377899999999876555431     210                1            12377888877665432     


Q ss_pred             CCCCCCceEecc-----CCCCccccccc
Q 038476           83 QMFRPNNFVFGQ-----SRAGNNWAKGH  105 (108)
Q Consensus        83 ~lf~~~n~i~~~-----~gsgnNwa~Gy  105 (108)
                         .+..+..++     .||||||+.|+
T Consensus        61 ---a~~ki~lG~~~t~GlGAG~np~vG~   85 (396)
T 4dxd_A           61 ---AESKIQIGEKLTRGLGAGANPEIGK   85 (396)
T ss_dssp             ---CSEEEECCHHHHTTSCCTTCHHHHH
T ss_pred             ---CccEEEcCccccCCCCCCCChHHHH
Confidence               134455554     59999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	108
d1tubb1	243	c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus	3e-41
d1tuba1	245	c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus	2e-33
d2btoa1	244	c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthec	8e-30

>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 243

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  133 bits (337), Expect = 3e-41
 Identities = 75/108 (69%), Positives = 90/108 (83%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSV 60
           MREI+HIQ GQCGNQIG+ FWEV+     + P   Y G+SDLQLER+ VYYN+A+  + V
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60

Query: 61  PRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
           PRA+L+DLEPGTMD+VRSGP+GQ+FRP+NFVFGQS AGNNWAKGHY E
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108

>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 245

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  114 bits (286), Expect = 2e-33
 Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 2/110 (1%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQL--ERVTVYYNKASNGR 58
           MRE + I  GQ G QIG+  WE+ C+   + P      +  +    +    ++++   G+
Sbjct: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 59  SVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHYIE 108
            VPRAV +DLEP  +D VR+G Y Q+F P   + G+  A NN+A+GHY  
Sbjct: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTI 110

>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 244

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin alpha-subunit
species: Prosthecobacter dejongeii [TaxId: 48465]

 Score =  104 bits (261), Expect = 8e-30
 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 4/109 (3%)

Query: 1   MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYN---KASNG 57
           +   + +  GQ GNQI ++FW+ VC+   + PL G            + +++   ++S+G
Sbjct: 1   VNNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSG 60

Query: 58  RSVPRAVLMDLEPGTMDAVRSGPYGQMFRPNNFVFGQSRAGNNWAKGHY 106
             VPRA+++DLEP  +D V++   G +F P N +     AG N+A G+ 
Sbjct: 61  SYVPRAIMVDLEPSVIDNVKA-TSGSLFNPANLISRTEGAGGNFAVGYL 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	108
d1tubb1	243	Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982	100.0
d1tuba1	245	Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98	100.0
d2btoa1	244	Tubulin alpha-subunit {Prosthecobacter dejongeii [	100.0

>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=2.2e-47  Score=275.02  Aligned_cols=107  Identities=69%  Similarity=1.246  Sum_probs=103.5

Q ss_pred             CEeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEeecCCCCcccceeEecCCCCcccceeccC
Q 038476            1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRSGP   80 (108)
Q Consensus         1 m~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~~~   80 (108)
                      |||||+|||||||||||.+||+++++||+++++|.+..+.+...+++++||.|...++|+|||||||+||+||+++++++
T Consensus         1 MrEiI~iqvGQcGnQIG~~fw~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~Ep~vi~~i~~~~   80 (243)
T d1tubb1           1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGP   80 (243)
T ss_dssp             CCEEEEEECHHHHHHHHHHHGGGTTTSCCSSCCCSSSSCCCCSSCCSSCCSSTTTTSTTCCCCEECCSSSHHHHHHSSSS
T ss_pred             CCcEEEEeccChHHHHHHHHHHHHHHHcCCCCCCCCCCCcccchhccccccccCCCCccccceeEecCCcchhhhhccCc
Confidence            99999999999999999999999999999999999888778788899999999999999999999999999999999999


Q ss_pred             CCCCCCCCceEeccCCCCccccccccc
Q 038476           81 YGQMFRPNNFVFGQSRAGNNWAKGHYI  107 (108)
Q Consensus        81 ~~~lf~~~n~i~~~~gsgnNwa~Gyy~  107 (108)
                      ++++|+|++++++++|||||||+|||+
T Consensus        81 ~~~~f~~~~~i~~~~gagNNwA~Gy~~  107 (243)
T d1tubb1          81 FGQIFRPDNFVFGQSGAGNNWAKGHYT  107 (243)
T ss_dssp             SCCCCSSSCCCCTTCCCCSSTHHHHTS
T ss_pred             cccccCccceEEcccCcccceeeeeec
Confidence            999999999999999999999999986

>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=9.9e-47  Score=271.79  Aligned_cols=107  Identities=37%  Similarity=0.747  Sum_probs=100.8

Q ss_pred             CEeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCc--ccccceeeeEeecCCCCcccceeEecCCCCcccceec
Q 038476            1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSD--LQLERVTVYYNKASNGRSVPRAVLMDLEPGTMDAVRS   78 (108)
Q Consensus         1 m~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~vpRailiD~ep~~i~~i~~   78 (108)
                      |||||+|||||||||||.+||+++++||+|+++|.+..++.  ...+++++||+|.++++|+|||||||+||+||++++.
T Consensus         1 MrEII~iqvGQcGnQIG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRavlvD~E~~vI~~i~~   80 (245)
T d1tuba1           1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT   80 (245)
T ss_dssp             CCCCCEECCSHHHHHHHHHHHHHHTTTCCTTTCCCCSCCTTSSTTCCCSCCSSCSSSCTTTSCSCCEEESSHHHHHHHSG
T ss_pred             CCcEEEEeccCHHHHHHHHHHHHHHHHhCcCCCCCccCccccccccccchhhhhcccCCccccceeEecCCcceeeeecc
Confidence            99999999999999999999999999999999998766543  3567889999999999999999999999999999999


Q ss_pred             cCCCCCCCCCceEeccCCCCccccccccc
Q 038476           79 GPYGQMFRPNNFVFGQSRAGNNWAKGHYI  107 (108)
Q Consensus        79 ~~~~~lf~~~n~i~~~~gsgnNwa~Gyy~  107 (108)
                      ++++++|+|++++++++|||||||+|||+
T Consensus        81 ~~~~~~f~~~~~i~~~~gsgNNwA~Gy~~  109 (245)
T d1tuba1          81 GTYRQLFHPEQLITGKEDAANNYARGHYT  109 (245)
T ss_dssp             GGCSCCCCSSSEEECCSCCCCSSSTTTTS
T ss_pred             CcchhccCccccccCCCCcccchHhhhhc
Confidence            99999999999999999999999999996

>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin alpha-subunit
species: Prosthecobacter dejongeii [TaxId: 48465]

Probab=100.00  E-value=8e-43  Score=251.25  Aligned_cols=106  Identities=32%  Similarity=0.626  Sum_probs=94.0

Q ss_pred             CEeEEEEecCchHHHHHHHHHHHHHhhcCCCCCCceeCCCcccccceeeeEe---ecCCCCcccceeEecCCCCccccee
Q 038476            1 MREILHIQGGQCGNQIGSNFWEVVCVNRVLIPLAGYIGNSDLQLERVTVYYN---KASNGRSVPRAVLMDLEPGTMDAVR   77 (108)
Q Consensus         1 m~eii~lqvGQcGnqiG~~fw~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~---e~~~~~~vpRailiD~ep~~i~~i~   77 (108)
                      |+|+|+|||||||||||.+||++|++||+|++.+........+.++.++||.   |+..++|+|||||||+||++|++++
T Consensus         1 ~~~~I~iqvGQcGnQIG~~fw~~l~~EH~i~~~~~~~~~~~~~~~~~~~ff~~~~e~~~~~~~pRavliD~Ep~vi~~~~   80 (244)
T d2btoa1           1 VNNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGSYVPRAIMVDLEPSVIDNVK   80 (244)
T ss_dssp             CCEEEEEEEHHHHHHHHHHHHHHHHHHHTCCTTTCCCSSSCCCSSSGGGTEEECSCC--CCEEECEEEEESSSHHHHHHH
T ss_pred             CceeEEEecCChHHHHHHHHHHHHHHHhCCCCCCCcCCCcccccCCccccccccccccCCCcccceEEEcCCcchhhhhc
Confidence            8999999999999999999999999999999877665555556677788886   6778999999999999999999997


Q ss_pred             ccCCCCCCCCCceEeccCCCCccccccccc
Q 038476           78 SGPYGQMFRPNNFVFGQSRAGNNWAKGHYI  107 (108)
Q Consensus        78 ~~~~~~lf~~~n~i~~~~gsgnNwa~Gyy~  107 (108)
                      .+ .+.+|+|++++++++|||||||+|||+
T Consensus        81 ~~-~~~~f~~~~~i~~~~gsgnNwa~Gy~~  109 (244)
T d2btoa1          81 AT-SGSLFNPANLISRTEGAGGNFAVGYLG  109 (244)
T ss_dssp             HH-STTCSCGGGEEECSSCCTTCHHHHHTS
T ss_pred             cc-cccccCcccccccccccccchhhhcch
Confidence            65 588999999999999999999999996