Citrus Sinensis ID: 038521

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320----
MASSSSPPRNDKKMHDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSRVRKQIGSFGDSFFILKERFPYKTRNWRSALTEAANLSGFDSRVIRHFQGSYFAHNVRSAEETGRLDDLRKELLSKLLNDWNVRNFQNINVNFQSKRLAREKVLIVFDDVNHPRQIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQMKELVHANALKLFTQCAFRRDHLDAGYTALAHKAFSTRTQVIQTSPWPKILRLCYYTVV
ccccccccccccccccEEEcccccccccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHHHcccccEEEEEEccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcEEEEEcccccHHHHHHHHccccccccccEEEEEcccHHHHHHcccccEEEcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccEEEEEEEEEcc
ccccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHccccEEEccccccccccHHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEccHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccEEEEEcccccHHHHHHHHccccccccccEEEEEEccHHHHHHccccEEEEEccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEc
masssspprndkkmHDVFVSfrgedtrdnFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTIEASTISIIIFSEKYASSKWCLDELLKILECkrnygqivipvfyrvdpsrvrkqigsfgdsffilkerfpyktrNWRSALTEAanlsgfdsrVIRHFqgsyfahnvrsaeetgRLDDLRKELLSKLLNDwnvrnfqniNVNFQSKRLAREKVLIVfddvnhprQIELLIGRldrfasgsrviiTARDKQVLTNCEIDHIYQMKELVHANALKLFTQCAFRRDHLDAGYTALAHKAFSTrtqviqtspwpkilrlcYYTVV
masssspprndkkmHDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIvipvfyrvdpsRVRKqigsfgdsffilkERFPYKTRNWRSALTEAANLSGFDSRVIRHFQGSyfahnvrsaeetgrlDDLRKELLSKLlndwnvrnfqninvnfqskrlAREKVLIVFDDVNHPRQIELLigrldrfasgsrviitardkqvltNCEIDHIYQMKELVHANALKLFTQCAFRRDHLDAGYTALAHKAfstrtqviqtspwpkilrLCYYTVV
MASSSSPPRNDKKMHDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSRVRKQIGSFGDSFFILKERFPYKTRNWRSALTEAANLSGFDSRVIRHFQGSYFAHNVRSAEETGRLDDLRKELLSKLLNDWNVRNFQNINVNFQSKRLAREKVLIVFDDVNHPRQIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQMKELVHANALKLFTQCAFRRDHLDAGYTALAHKAFSTRTQVIQTSPWPKILRLCYYTVV
****************VFVSFRGEDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSRVRKQIGSFGDSFFILKERFPYKTRNWRSALTEAANLSGFDSRVIRHFQGSYFAHNVRSAEETGRLDDLRKELLSKLLNDWNVRNFQNINVNFQSKRLAREKVLIVFDDVNHPRQIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQMKELVHANALKLFTQCAFRRDHLDAGYTALAHKAFSTRTQVIQTSPWPKILRLCYYTV*
**************HDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSRVRKQIGSFGDSFFILKERFPYKTRNWRSALTEAANLSGFDSRVIRHFQGSYFAHNVRSAEETGRLDDLRKELLSKLLNDWNVRNFQNINVNFQSKRLAREKVLIVFDDVNHPRQIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQMKELVHANALKLFTQCAFRRDHLDAGYTALAHKAFSTRTQVIQTSPWPKILRLCYYTVV
***********KKMHDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSRVRKQIGSFGDSFFILKERFPYKTRNWRSALTEAANLSGFDSRVIRHFQGSYFAHNVRSAEETGRLDDLRKELLSKLLNDWNVRNFQNINVNFQSKRLAREKVLIVFDDVNHPRQIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQMKELVHANALKLFTQCAFRRDHLDAGYTALAHKAFSTRTQVIQTSPWPKILRLCYYTVV
**********DKKMHDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSRVRKQIGSFGDSFFILKERFPYKTRNWRSALTEAANLSGFDSRVIRHFQGSYFAHNVRSAEETGRLDDLRKELLSKLLNDWNVRNFQNINVNFQSKRLAREKVLIVFDDVNHPRQIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQMKELVHANALKLFTQCAFRRDHLDAGYTALAHKAFSTRTQVIQTSPWPKILRLCYYTVV
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MASSSSPPRNDKKMHDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSRVRKQIGSFGDSFFILKERFPYKTRNWRSALTEAANLSGFDSRVIRHFQGSYFAHNVRSAEETGRLDDLRKELLSKLLNDWNVRNFQNINVNFQSKRLAREKVLIVFDDVNHPRQIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQMKELVHANALKLFTQCAFRRDHLDAGYTALAHKAFSTRTQVIQTSPWPKILRLCYYTVV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query324 2.2.26 [Sep-21-2011]
O82500 1095 Putative disease resistan no no 0.456 0.135 0.503 2e-34
Q40392 1144 TMV resistance protein N N/A no 0.425 0.120 0.5 1e-31
O23530 1301 Protein SUPPRESSOR OF npr no no 0.462 0.115 0.458 3e-30
Q9FHE9354 Protein PHLOEM PROTEIN 2- no no 0.466 0.426 0.410 8e-26
Q9C5Q9411 Protein PHLOEM PROTEIN 2- no no 0.410 0.323 0.423 1e-21
Q9FHE8392 Protein PHLOEM PROTEIN 2- no no 0.438 0.362 0.425 6e-20
Q9SYC9571 Vesicle-associated protei no no 0.447 0.253 0.335 2e-18
Q9SZ67 1895 Probable WRKY transcripti no no 0.305 0.052 0.36 9e-13
Q9FKN7 1613 Protein DA1-related 4 OS= no no 0.379 0.076 0.346 5e-11
Q9FL92 1372 Probable WRKY transcripti no no 0.200 0.047 0.410 1e-09
>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1 Back     alignment and function desciption
 Score =  147 bits (370), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/153 (50%), Positives = 96/153 (62%), Gaps = 5/153 (3%)

Query: 1   MASSSSPPRNDKKMHDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISES 60
           MASSSS    +   +DVF SFRGED R+NF SHL        I TF D+ +KR   I   
Sbjct: 1   MASSSS----NSWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHE 56

Query: 61  LLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSRVRKQIG 120
           L   I  S IS+++FSE YASS WCLDEL++I++CK   G  V+PVFY+VDPS +RKQ G
Sbjct: 57  LRAAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTG 116

Query: 121 SFGDSFF-ILKERFPYKTRNWRSALTEAANLSG 152
            FG SF      +   +  NWR ALT+AAN+ G
Sbjct: 117 KFGMSFLETCCGKTEERQHNWRRALTDAANILG 149

Arabidopsis thaliana (taxid: 3702)
>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1 Back     alignment and function description
>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3 Back     alignment and function description
>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1 Back     alignment and function description
>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1 Back     alignment and function description
>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1 Back     alignment and function description
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1 Back     alignment and function description
>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1 Back     alignment and function description
>sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2 Back     alignment and function description
>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query324
255562174 515 hypothetical protein RCOM_1382630 [Ricin 0.873 0.549 0.404 3e-55
147769268 1236 hypothetical protein VITISV_013549 [Viti 0.959 0.251 0.400 4e-55
356545721 653 PREDICTED: protein SUPPRESSOR OF npr1-1, 0.873 0.433 0.412 3e-53
147845097 826 hypothetical protein VITISV_009816 [Viti 0.879 0.345 0.372 1e-52
147821370 1386 hypothetical protein VITISV_013693 [Viti 0.864 0.202 0.419 2e-51
356569977 833 PREDICTED: TMV resistance protein N-like 0.879 0.342 0.387 3e-51
449524388 820 PREDICTED: TMV resistance protein N-like 0.839 0.331 0.434 1e-50
359486106 1320 PREDICTED: TMV resistance protein N-like 0.873 0.214 0.353 3e-50
147817181 1015 hypothetical protein VITISV_018104 [Viti 0.879 0.280 0.388 4e-50
121544148 509 TIR-NBS class disease resistance protein 0.898 0.571 0.377 6e-49
>gi|255562174|ref|XP_002522095.1| hypothetical protein RCOM_1382630 [Ricinus communis] gi|223538694|gb|EEF40295.1| hypothetical protein RCOM_1382630 [Ricinus communis] Back     alignment and taxonomy information
 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 131/324 (40%), Positives = 181/324 (55%), Gaps = 41/324 (12%)

Query: 13  KMHDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTIEASTISI 72
           K +DVF+SFRG D RD F SHL+ +L +N +  F+D +L RG++I+ SLL  IE S +S+
Sbjct: 4   KKYDVFISFRGADIRDGFLSHLYKSLCRNQVHAFVDENLDRGEDITSSLLEIIEQSYVSV 63

Query: 73  IIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSRVRKQIGSFGDSFFILKER 132
           +IFSE YA S WCLDEL+KILECK    QIV+PVFYRVDP  V++  G FGD+    +E 
Sbjct: 64  VIFSENYAFSPWCLDELVKILECKTTMAQIVLPVFYRVDPIHVQQLTGCFGDAIAKHREE 123

Query: 133 FP---YKTRNWRSALTEAANLSGFDSRVIRH----------------------------F 161
           F     K   W  AL E   ++G  S+ I++                            F
Sbjct: 124 FKNSLRKVETWCQALKETTGMAGLVSQNIKYVRVVGIWGMGGIGKTTVAVKVFDQVSGQF 183

Query: 162 QGSYFAHNVRSAEETGRLDDLRKELLSKLLNDWNVRNFQNINVNFQ-----SKRLAREKV 216
               F  +VR   E    D L++ELL ++L     +   N  +         K L+R KV
Sbjct: 184 TSRCFFGDVRENLEKFTPDCLQRELLFQVLG----KEISNAGMPIMLSSSIRKMLSRRKV 239

Query: 217 LIVFDDVNHPRQIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQMKELVHANALK 276
           LIV DDV+  +QIELLIG+   +   SR+I+T+RDKQ+L N   + IY+++EL  + AL 
Sbjct: 240 LIVLDDVSDLKQIELLIGKHTSYGPRSRIIMTSRDKQLLQNAGAE-IYEVEELNGSEALL 298

Query: 277 LFTQCAFRRDHLDAGYTALAHKAF 300
           LF   AF++D    GY AL+ +A 
Sbjct: 299 LFCLHAFKQDSPKKGYMALSERAI 322

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147769268|emb|CAN68108.1| hypothetical protein VITISV_013549 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356545721|ref|XP_003541284.1| PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Glycine max] Back     alignment and taxonomy information
>gi|147845097|emb|CAN78476.1| hypothetical protein VITISV_009816 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147821370|emb|CAN67940.1| hypothetical protein VITISV_013693 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356569977|ref|XP_003553169.1| PREDICTED: TMV resistance protein N-like [Glycine max] Back     alignment and taxonomy information
>gi|449524388|ref|XP_004169205.1| PREDICTED: TMV resistance protein N-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359486106|ref|XP_002274951.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147817181|emb|CAN77679.1| hypothetical protein VITISV_018104 [Vitis vinifera] Back     alignment and taxonomy information
>gi|121544148|gb|ABM55688.1| TIR-NBS class disease resistance protein [(Populus tomentosa x P. bolleana) x P. tomentosa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query324
TAIR|locus:2136108 1095 AT4G11170 [Arabidopsis thalian 0.456 0.135 0.509 1.5e-47
TAIR|locus:2129221 1147 RPP4 "recognition of peronospo 0.475 0.134 0.503 1.2e-46
TAIR|locus:2155801 1046 AT5G58120 [Arabidopsis thalian 0.469 0.145 0.464 5.4e-46
UNIPROTKB|Q40392 1144 N "TMV resistance protein N" [ 0.472 0.133 0.496 1.1e-45
TAIR|locus:2151491 1123 AT5G46450 [Arabidopsis thalian 0.475 0.137 0.464 1.3e-45
TAIR|locus:2115870 1234 AT4G08450 [Arabidopsis thalian 0.456 0.119 0.464 1.9e-45
TAIR|locus:2130280 1041 AT4G16960 [Arabidopsis thalian 0.475 0.147 0.496 2.1e-45
TAIR|locus:2130250 1304 AT4G16920 [Arabidopsis thalian 0.435 0.108 0.485 1.6e-44
TAIR|locus:2153072 1229 AT5G51630 [Arabidopsis thalian 0.469 0.123 0.484 6.9e-44
TAIR|locus:2161513 780 AT5G17970 [Arabidopsis thalian 0.469 0.194 0.461 2.5e-43
TAIR|locus:2136108 AT4G11170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 366 (133.9 bits), Expect = 1.5e-47, Sum P(2) = 1.5e-47
 Identities = 78/153 (50%), Positives = 97/153 (63%)

Query:     1 MASSSSPPRNDKKMHDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISES 60
             MASSSS   N  + +DVF SFRGED R+NF SHL        I TF D+ +KR   I   
Sbjct:     1 MASSSS---NSWR-YDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHE 56

Query:    61 LLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSRVRKQIG 120
             L   I  S IS+++FSE YASS WCLDEL++I++CK   G  V+PVFY+VDPS +RKQ G
Sbjct:    57 LRAAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTG 116

Query:   121 SFGDSFF-ILKERFPYKTRNWRSALTEAANLSG 152
              FG SF      +   +  NWR ALT+AAN+ G
Sbjct:   117 KFGMSFLETCCGKTEERQHNWRRALTDAANILG 149
GO:0000166 "nucleotide binding" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006952 "defense response" evidence=IEA;ISS
GO:0007165 "signal transduction" evidence=IEA
GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA
GO:0043531 "ADP binding" evidence=IEA
GO:0005739 "mitochondrion" evidence=IDA
GO:0010193 "response to ozone" evidence=IEP
TAIR|locus:2129221 RPP4 "recognition of peronospora parasitica 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155801 AT5G58120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)] Back     alignment and assigned GO terms
TAIR|locus:2151491 AT5G46450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115870 AT4G08450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130280 AT4G16960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130250 AT4G16920 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153072 AT5G51630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161513 AT5G17970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00038689001
SubName- Full=Chromosome chr18 scaffold_96, whole genome shotgun sequence; (1782 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query324
PLN03210 1153 PLN03210, PLN03210, Resistant to P 6e-42
pfam01582135 pfam01582, TIR, TIR domain 1e-36
smart00255140 smart00255, TIR, Toll - interleukin 1 - resistance 3e-33
PLN03210 1153 PLN03210, PLN03210, Resistant to P 7e-15
PLN03194187 PLN03194, PLN03194, putative disease resistance pr 1e-14
pfam13676102 pfam13676, TIR_2, TIR domain 1e-10
pfam00931285 pfam00931, NB-ARC, NB-ARC domain 1e-04
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P Back     alignment and domain information 
 Score =  155 bits (392), Expect = 6e-42
 Identities = 72/156 (46%), Positives = 98/156 (62%), Gaps = 3/156 (1%)

Query: 1   MASSSSPPRNDKKMHDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISES 60
           MASSSS  RN   ++DVF SF GED R  F SH    L +  I  F DN+++R   +   
Sbjct: 1   MASSSSSSRN--WVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPE 58

Query: 61  LLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSRVRKQIG 120
           L   I  S I++++FS+ YASS WCL+ELL+I+ CK   GQ+VIPVFY +DPS VRKQ G
Sbjct: 59  LKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTG 118

Query: 121 SFGDSFF-ILKERFPYKTRNWRSALTEAANLSGFDS 155
            FG++F    + +   +   W+ ALT+ AN+ G+ S
Sbjct: 119 DFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHS 154

syringae 6; Provisional. Length = 1153
>gnl|CDD|216585 pfam01582, TIR, TIR domain Back     alignment and domain information
>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance Back     alignment and domain information
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P Back     alignment and domain information
>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional Back     alignment and domain information
>gnl|CDD|222311 pfam13676, TIR_2, TIR domain Back     alignment and domain information
>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 324
PLN03210 1153 Resistant to P. syringae 6; Provisional 100.0
PLN03194187 putative disease resistance protein; Provisional 100.0
KOG4658 889 consensus Apoptotic ATPase [Signal transduction me 99.91
PF01582141 TIR: TIR domain; InterPro: IPR000157 In Drosophila 99.87
PF00931287 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is 99.86
smart00255140 TIR Toll - interleukin 1 - resistance. 99.85
PF13676102 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_ 99.58
KOG3678832 consensus SARM protein (with sterile alpha and arm 98.97
PF08937130 DUF1863: MTH538 TIR-like domain (DUF1863); InterPr 98.0
PF05729166 NACHT: NACHT domain 97.14
PF08357150 SEFIR: SEFIR domain; InterPro: IPR013568 This doma 96.52
PRK06893229 DNA replication initiation factor; Validated 96.44
PRK04841 903 transcriptional regulator MalT; Provisional 96.37
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 95.8
PF10137125 TIR-like: Predicted nucleotide-binding protein con 95.3
PRK00411 394 cdc6 cell division control protein 6; Reviewed 94.89
PF13173128 AAA_14: AAA domain 94.64
TIGR02928 365 orc1/cdc6 family replication initiation protein. M 93.2
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 91.66
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 91.42
PRK13342 413 recombination factor protein RarA; Reviewed 91.17
PRK09087226 hypothetical protein; Validated 90.12
PRK08727233 hypothetical protein; Validated 89.54
TIGR01242364 26Sp45 26S proteasome subunit P45 family. Many pro 89.3
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 87.72
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 87.39
PRK06645 507 DNA polymerase III subunits gamma and tau; Validat 86.1
PF1327183 DUF4062: Domain of unknown function (DUF4062) 85.64
PRK05564 313 DNA polymerase III subunit delta'; Validated 85.02
PRK12402337 replication factor C small subunit 2; Reviewed 84.89
PRK05642234 DNA replication initiation factor; Validated 84.72
PRK07471 365 DNA polymerase III subunit delta'; Validated 83.62
PRK06620214 hypothetical protein; Validated 83.47
cd01128249 rho_factor Transcription termination factor rho is 83.39
PLN03025 319 replication factor C subunit; Provisional 83.01
PRK14963 504 DNA polymerase III subunits gamma and tau; Provisi 82.76
COG4916329 Uncharacterized protein containing a TIR (Toll-Int 81.67
PRK08084235 DNA replication initiation factor; Provisional 81.61
PRK07003 830 DNA polymerase III subunits gamma and tau; Validat 80.86
PF02463220 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: 80.05
>PLN03210 Resistant to P Back     alignment and domain information 
Probab=100.00  E-value=3e-64  Score=536.04  Aligned_cols=298  Identities=37%  Similarity=0.617  Sum_probs=262.5

Q ss_pred             CCCCCCCCCCCCCCccEEecCccccCCCchHHHHHHHHhcCCceEEEeCCCCCcccchHHHHHHHhhcceEEEEEecCcc
Q 038521            1 MASSSSPPRNDKKMHDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTIEASTISIIIFSEKYA   80 (324)
Q Consensus         1 ~~~~s~~~~~~~~~~dvFis~~g~D~~~~f~~~L~~~L~~~g~~~f~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~   80 (324)
                      ||+|||+  ++.++|||||||||+|||++|++||+++|.++||++|+|+++++|+.|++++.+||++|+++|||||+||+
T Consensus         1 ~~~~~~~--~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya   78 (1153)
T PLN03210          1 MASSSSS--SRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYA   78 (1153)
T ss_pred             CCCCCCC--CCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcc
Confidence            5554444  35789999999999999999999999999999999999989999999999999999999999999999999


Q ss_pred             CchhhHHHHHHHHHHHHhcCCeEEeEEEeecccccccccccchhhhhHhhhcC-hhhHHhHHHHhhhhhhhcCccccc--
Q 038521           81 SSKWCLDELLKILECKRNYGQIVIPVFYRVDPSRVRKQIGSFGDSFFILKERF-PYKTRNWRSALTEAANLSGFDSRV--  157 (324)
Q Consensus        81 ~s~wcl~El~~i~~~~~~~~~~viPvfy~v~psdvr~q~g~~~~~~~~~~~~~-~e~v~~w~~al~~v~~~~G~~~~~--  157 (324)
                      +|.|||+||++|++|++..++.|+||||+|+|+|||+|+|.|+++|.+++.+. .+++++||+||+++++++|++...  
T Consensus        79 ~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~  158 (1153)
T PLN03210         79 SSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWP  158 (1153)
T ss_pred             cchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCCC
Confidence            99999999999999999999999999999999999999999999999988764 478999999999999999988653  


Q ss_pred             -------------------------------------------------------------------------cccccce
Q 038521          158 -------------------------------------------------------------------------IRHFQGS  164 (324)
Q Consensus       158 -------------------------------------------------------------------------~~~F~~~  164 (324)
                                                                                               ..+|++.
T Consensus       159 ~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~  238 (1153)
T PLN03210        159 NEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSS  238 (1153)
T ss_pred             CHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeE
Confidence                                                                                     6789999


Q ss_pred             eeeecc--cc---ccc-----cCC-HHHHHHHHHHhhhcC-C-CCccchhccHHHHHHHhcCCCcEEEEecCCCHHHHHH
Q 038521          165 YFAHNV--RS---AEE-----TGR-LDDLRKELLSKLLND-W-NVRNFQNINVNFQSKRLAREKVLIVFDDVNHPRQIEL  231 (324)
Q Consensus       165 ~wv~~v--~~---vs~-----~~~-~~~l~~~il~~l~~~-~-~~~~~~~~~~~~l~~~L~~kr~LlVLDDV~~~~~~~~  231 (324)
                      +|+.+.  +.   ..+     .++ ...++++++.++... . ...     ....++++|++||+||||||||+..+|+.
T Consensus       239 vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~-----~~~~~~~~L~~krvLLVLDdv~~~~~l~~  313 (1153)
T PLN03210        239 VFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIY-----HLGAMEERLKHRKVLIFIDDLDDQDVLDA  313 (1153)
T ss_pred             EEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccC-----CHHHHHHHHhCCeEEEEEeCCCCHHHHHH
Confidence            888642  11   111     111 245677777777655 2 211     12457889999999999999999999999


Q ss_pred             HHhcCCCCCCCCeEEEEcCCchhhhhcCCcceEEeccCChhhHHHHHHHhhcCCCCCChhHHHHHHHHHHHccc
Q 038521          232 LIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQMKELVHANALKLFTQCAFRRDHLDAGYTALAHKAFSTRTQ  305 (324)
Q Consensus       232 l~~~~~~~~~GSrIIiTTR~~~v~~~~~~~~~~~v~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~G  305 (324)
                      +.+...|+++|||||||||+++++..++++++|+|+.|+++|||+||+++||++..+++++++++++|+++|+|
T Consensus       314 L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~G  387 (1153)
T PLN03210        314 LAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGN  387 (1153)
T ss_pred             HHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCC
Confidence            99988999999999999999999998888899999999999999999999999888888999999999999999

syringae 6; Provisional
>PLN03194 putative disease resistance protein; Provisional Back     alignment and domain information
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo Back     alignment and domain information
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] Back     alignment and domain information
>smart00255 TIR Toll - interleukin 1 - resistance Back     alignment and domain information
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A Back     alignment and domain information
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] Back     alignment and domain information
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>TIGR01242 26Sp45 26S proteasome subunit P45 family Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF13271 DUF4062: Domain of unknown function (DUF4062) Back     alignment and domain information
>PRK05564 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown] Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query324
3jrn_A176 Crystal Structure Of Tir Domain From Arabidopsis Th 4e-26
3ozi_A204 Crystal Structure Of The Tir Domain From The Flax D 3e-24
3h16_A154 Crystal Structure Of A Bacteria Tir Domain, Pdtir F 3e-04
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176 Back     alignment and structure 
Iteration: 1

 Score =  115 bits (288), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 61/140 (43%), Positives = 84/140 (60%), Gaps = 2/140 (1%)
Query: 15  HDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDN-DLKRGDEISESLLGTIEASTISII 73
           +DVF+SFRG DTR NF S L+  L + +I TF D+ +L+ G   S  L   IE S  +++
Sbjct: 9   YDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVV 68
Query: 74  IFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSRVRKQIGSFGDSFFILKERF 133
           + SE YA+S WCLDEL+ I++ ++     V+P+FY V+P+ VR Q G   + F     R 
Sbjct: 69  VVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASRE 128
Query: 134 -PYKTRNWRSALTEAANLSG 152
            P K   WR ALT  A LSG
Sbjct: 129 DPEKVLKWRQALTNFAQLSG 148
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204 Back     alignment and structure
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From Paracoccus Denitrificans Length = 154 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query324
3jrn_A176 AT1G72930 protein; TIR domain arabidopsis thaliana 2e-81
3ozi_A204 L6TR; plant TIR domain, plant protein; 2.30A {Linu 1e-80
3h16_A154 TIR protein; bacteria TIR domain, signaling protei 1e-63
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-22
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
3ub2_A146 TOLL/interleukin-1 receptor domain-containing ADA 1e-13
1z6t_A 591 APAF-1, apoptotic protease activating factor 1; ca 1e-08
2a5y_B 549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 3e-08
1t3g_A159 X-linked interleukin-1 receptor accessory protein- 7e-07
2j67_A178 TOLL like receptor 10; TIR, IL-1, TLR10, membrane, 1e-06
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176 Back     alignment and structure
 Score =  244 bits (624), Expect = 2e-81
 Identities = 64/158 (40%), Positives = 89/158 (56%), Gaps = 8/158 (5%)

Query: 1   MASSSSPPRNDKKMHDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDND-LKRGDEISE 59
           M+S ++        +DVF+SFRG DTR NF S L+  L + +I TF D+  L+ G   S 
Sbjct: 1   MSSHTAT------KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSP 54

Query: 60  SLLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSRVRKQI 119
            L   IE S  ++++ SE YA+S WCLDEL+ I++ ++     V+P+FY V+P+ VR Q 
Sbjct: 55  ELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQT 114

Query: 120 GSFGDSFFILKERF-PYKTRNWRSALTEAANLSGFDSR 156
           G   + F     R  P K   WR ALT  A LSG  S 
Sbjct: 115 GVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSG 152
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204 Back     alignment and structure
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146 Back     alignment and structure
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 Back     alignment and structure
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 Back     alignment and structure
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159 Back     alignment and structure
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query324
3ozi_A204 L6TR; plant TIR domain, plant protein; 2.30A {Linu 100.0
3jrn_A176 AT1G72930 protein; TIR domain arabidopsis thaliana 100.0
3h16_A154 TIR protein; bacteria TIR domain, signaling protei 99.97
3ub2_A146 TOLL/interleukin-1 receptor domain-containing ADA 99.93
1fyx_A149 TOLL-like receptor 2; beta-alpha-beta fold, signal 99.87
1t3g_A159 X-linked interleukin-1 receptor accessory protein- 99.87
2js7_A160 Myeloid differentiation primary response protein M 99.87
2j67_A178 TOLL like receptor 10; TIR, IL-1, TLR10, membrane, 99.86
2a5y_B 549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 99.84
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 99.61
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 99.6
3j0a_A844 TOLL-like receptor 5; membrane protein, leucine-ri 99.58
1z6t_A 591 APAF-1, apoptotic protease activating factor 1; ca 99.43
1w5s_A 412 Origin recognition complex subunit 2 ORC2; replica 97.66
2qby_B 384 CDC6 homolog 3, cell division control protein 6 ho 97.24
1eiw_A111 Hypothetical protein MTH538; CHEY-like fold, flavo 97.11
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 97.1
2qen_A350 Walker-type ATPase; unknown function; HET: ADP; 2. 96.86
2qby_A 386 CDC6 homolog 1, cell division control protein 6 ho 96.52
2v1u_A 387 Cell division control protein 6 homolog; DNA repli 96.43
2fna_A357 Conserved hypothetical protein; structural genomic 95.96
1fnn_A 389 CDC6P, cell division control protein 6; ORC1, AAA 95.93
2chg_A226 Replication factor C small subunit; DNA-binding pr 95.66
3hyn_A189 Putative signal transduction protein; DUF1863 fami 95.29
1sxj_B 323 Activator 1 37 kDa subunit; clamp loader, processi 94.62
1iqp_A 327 RFCS; clamp loader, extended AAA-ATPase domain, co 92.3
2chq_A 319 Replication factor C small subunit; DNA-binding pr 88.65
1jr3_A 373 DNA polymerase III subunit gamma; processivity, pr 88.14
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 85.88
3bos_A242 Putative DNA replication factor; P-loop containing 85.53
1hqc_A 324 RUVB; extended AAA-ATPase domain, complex with nuc 85.24
1sxj_E 354 Activator 1 40 kDa subunit; clamp loader, processi 84.5
2z4s_A 440 Chromosomal replication initiator protein DNAA; AA 81.63
1a5t_A 334 Delta prime, HOLB; zinc finger, DNA replication; 2 81.2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Back     alignment and structure
Probab=100.00  E-value=1.1e-48  Score=334.00  Aligned_cols=148  Identities=39%  Similarity=0.699  Sum_probs=138.3

Q ss_pred             CCCCCCccEEecCccccCCCchHHHHHHHHhcCCceEEEeC-CCCCcccchHHHHHHHhhcceEEEEEecCccCchhhHH
Q 038521            9 RNDKKMHDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDN-DLKRGDEISESLLGTIEASTISIIIFSEKYASSKWCLD   87 (324)
Q Consensus         9 ~~~~~~~dvFis~~g~D~~~~f~~~L~~~L~~~g~~~f~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wcl~   87 (324)
                      +.+.++|||||||||+|+|++|++||+.+|+++||++|+|+ ++++|+.|.++|.+||++||++|+|||+||++|+||++
T Consensus        30 ~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~  109 (204)
T 3ozi_A           30 SFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLM  109 (204)
T ss_dssp             ----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHH
T ss_pred             CCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHH
Confidence            45789999999999999999999999999999999999998 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh-cCCeEEeEEEeecccccccccccchhhhhHhhhcCh-hhHHhHHHHhhhhhhhcCcccc
Q 038521           88 ELLKILECKRN-YGQIVIPVFYRVDPSRVRKQIGSFGDSFFILKERFP-YKTRNWRSALTEAANLSGFDSR  156 (324)
Q Consensus        88 El~~i~~~~~~-~~~~viPvfy~v~psdvr~q~g~~~~~~~~~~~~~~-e~v~~w~~al~~v~~~~G~~~~  156 (324)
                      ||++|++|.+. .+++|+||||+|+|++||+|+|.||++|.+|+.++. +++++||.||+++++++|++..
T Consensus       110 EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~  180 (204)
T 3ozi_A          110 ELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIG  180 (204)
T ss_dssp             HHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEEC
T ss_pred             HHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecC
Confidence            99999999864 578999999999999999999999999999998874 6799999999999999999865
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Back     alignment and structure
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Back     alignment and structure
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Back     alignment and structure
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Back     alignment and structure
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Back     alignment and structure
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A Back     alignment and structure
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Back     alignment and structure
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Back     alignment and structure
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1 Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656} Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 324
d1fyva_161 c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H 3e-15
d1fyxa_149 c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H 1e-12
d2a5yb3277 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor 6e-10
>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.1 bits (171), Expect = 3e-15
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 3/111 (2%)

Query: 10  NDKKMHDVFVSFRGEDTRDNFTSHLFSALFQNNIETFI-DNDLKRGDEISESLLGTIEAS 68
                   F+S+ G D+     + L   L +  ++  + + +   G  I E+++  IE S
Sbjct: 8   QRNLQFHAFISYSGHDSF-WVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKS 66

Query: 69  TISIIIFSEKYASSKWCLDELLKILECKRNYGQIV-IPVFYRVDPSRVRKQ 118
             SI + S  +  S+WC  EL        + G    I +     P      
Sbjct: 67  YKSIFVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPS 117
>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149 Back     information, alignment and structure
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query324
d2a5yb3277 CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI 99.87
d1fyva_161 Toll-like receptor 1, TLR1 {Human (Homo sapiens) [ 99.78
d1fyxa_149 Toll-like receptor 2, TLR2 {Human (Homo sapiens) [ 99.74
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 88.83
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 88.57
d1wu7a197 Histidyl-tRNA synthetase (HisRS), C-terminal domai 86.27
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 83.64
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 80.75
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.87  E-value=1.9e-22  Score=180.83  Aligned_cols=150  Identities=13%  Similarity=0.101  Sum_probs=115.0

Q ss_pred             hhhhhhcCccccc-------------cccccceeeeeccccccccCCHHHHHHHHHHhh---hcC-C-CCc-cchh---c
Q 038521          145 TEAANLSGFDSRV-------------IRHFQGSYFAHNVRSAEETGRLDDLRKELLSKL---LND-W-NVR-NFQN---I  202 (324)
Q Consensus       145 ~~v~~~~G~~~~~-------------~~~F~~~~wv~~v~~vs~~~~~~~l~~~il~~l---~~~-~-~~~-~~~~---~  202 (324)
                      ..+.|++|.|+++             ..+|++++|++    +++.++...+...+...+   ... . ... ....   .
T Consensus        47 v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~----vs~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (277)
T d2a5yb3          47 LFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK----DSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVV  122 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE----CCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEE----ecCCCCHHHHHHHHHHHHHHhcchhhcCCccchhhhhHH
Confidence            3566788888876             45699999999    888887776665553333   222 1 111 1111   0


Q ss_pred             -cHHHHHHHhcCCCcEEEEecCCCHHHHHHHHhcCCCCCCCCeEEEEcCCchhhhhcCCc-ceEEeccCChhhHHHHHHH
Q 038521          203 -NVNFQSKRLAREKVLIVFDDVNHPRQIELLIGRLDRFASGSRVIITARDKQVLTNCEID-HIYQMKELVHANALKLFTQ  280 (324)
Q Consensus       203 -~~~~l~~~L~~kr~LlVLDDV~~~~~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~~~~-~~~~v~~L~~~es~~LF~~  280 (324)
                       ....+.+.|.++|+|+||||||+.++|+.+.      ..|||||||||++.++..+..+ ++|+|++|+.+|||+||+.
T Consensus       123 ~~~~~~~~~L~~kr~LlVLDDv~~~~~~~~~~------~~~srilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~  196 (277)
T d2a5yb3         123 LKRMICNALIDRPNTLFVFDDVVQEETIRWAQ------ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEA  196 (277)
T ss_dssp             HHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH------HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCeeEecchhhHHhhhhhhc------ccCceEEEEeehHHHHHhcCCCCceEECCCCCHHHHHHHHHH
Confidence             2446778899999999999999999998764      3589999999999999887654 7899999999999999999


Q ss_pred             hhcCCCCCChhHHHHHHHHHHHccc
Q 038521          281 CAFRRDHLDAGYTALAHKAFSTRTQ  305 (324)
Q Consensus       281 ~af~~~~~~~~~~~l~~~iv~~c~G  305 (324)
                      ++|....++ ..++++++|+++|+|
T Consensus       197 ~~~~~~~~~-~~~~~~~~iv~~c~G  220 (277)
T d2a5yb3         197 YGMPMPVGE-KEEDVLNKTIELSSG  220 (277)
T ss_dssp             TSCCCC--C-HHHHHHHHHHHHHTT
T ss_pred             HhCCccCch-hhHHHHHHHHHHhCC
Confidence            999765544 568999999999999
>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure