Citrus Sinensis ID: 038532

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
MATTSTVKLRSSDNEVFEVEKQVMIQSGTIRNMIEDDAADGEIPVQISSRNLAKIVEWCKCMQHRDRNNNNNDNNKEEEEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRRTFNIKKDFTPEEEKAVMDEHGWALHD
ccccccEEEEEccccEEEEcHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHHHHccccccc
cccccEEEEEEccccEEEEcHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccccccccccccccccccHcHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHHHHHHHHHcc
mattstvklrssdneVFEVEKQVMIQSGTIRNmieddaadgeipvqISSRNLAKIVEWCKCmqhrdrnnnnndnnkeeeeEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAADivkgktpeeIRRTFnikkdftpeeEKAVMDEHGWALHD
mattstvklrssdnevfevEKQVMIQSGTIRNMIEDDAADGEIPVQISSRNLAKIVEWCKCmqhrdrnnnnndnnkeeeeeEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAADivkgktpeeirrtfnikkdftpeeekavmdehgwalhd
MATTSTVKLRSSDNEVFEVEKQVMIQSGTIRNMIEDDAADGEIPVQISSRNLAKIVEWCKCMQHRDRnnnnndnnkeeeeeeeeewekkfdeeVSEDKDLHFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRRTFNIKKDFTPEEEKAVMDEHGWALHD
*********************QVMIQSGTIRNMIEDDAADGEIPVQISSRNLAKIVEWCKCM************************************DLHFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRRTFNI**********************
***TSTVKLRSSDNEVFEVEKQVMIQSGTIRNMIEDDAADGEIPVQISSRNLAKIVEWCKCMQHRDRNNNNNDNNKEEEEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRRTFNIKKDFTPEEEKAVMDEHGWALH*
**********SSDNEVFEVEKQVMIQSGTIRNMIEDDAADGEIPVQISSRNLAKIVEWCKCMQHRDRNNNN*************************DKDLHFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRRTFNIKKDFTPEEEKAVMDEHGWALHD
****STVKLRSSDNEVFEVEKQVMIQSGTIRNMIEDDAADGEIPVQISSRNLAKIVEWCKCMQH***************EEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRRTFNIKKDFTPEEEKAVMDEHGWALHD
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATTSTVKLRSSDNEVFEVEKQVMIQSGTIRNMIEDDAADGEIPVQISSRNLAKIVEWCKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDKDLHFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRRTFNIKKDFTPEEEKAVMDEHGWALHD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query164 2.2.26 [Sep-21-2011]
O49484152 SKP1-like protein 11 OS=A yes no 0.908 0.980 0.465 2e-30
O65674152 SKP1-like protein 12 OS=A yes no 0.908 0.980 0.459 3e-30
Q9LNT9163 SKP1-like protein 4 OS=Ar no no 0.957 0.963 0.432 3e-29
Q9FHW7171 SKP1-like protein 1B OS=A no no 0.969 0.929 0.416 3e-28
C5FHU9165 E3 ubiquitin ligase compl N/A no 0.963 0.957 0.424 5e-28
D4ARL8164 E3 ubiquitin ligase compl N/A no 0.957 0.957 0.415 7e-28
Q8TGW7165 E3 ubiquitin ligase compl N/A no 0.957 0.951 0.407 1e-27
Q557E4162 SCF ubiquitin ligase comp yes no 0.932 0.944 0.421 1e-27
P52285162 SCF ubiquitin ligase comp yes no 0.932 0.944 0.421 2e-27
Q39255160 SKP1-like protein 1A OS=A no no 0.932 0.956 0.445 2e-27
>sp|O49484|ASK11_ARATH SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1 Back     alignment and function desciption
 Score =  131 bits (330), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 102/161 (63%), Gaps = 12/161 (7%)

Query: 3   TTSTVKLRSSDNEVFEVEKQVMIQSGTIRNMIEDDAADGEIPV-QISSRNLAKIVEWCKC 61
           ++  + L SSD + FEVE+ V IQS TI +M+EDD     IP+  + S+ L K++E+CK 
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCK- 60

Query: 62  MQHRDRNNNNNDNNKEEEEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLC 121
             H D  N  +       EE+   W++KF   +  ++   F L+LAANYL I +LLD  C
Sbjct: 61  KHHVDEANPIS-------EEDLNNWDEKF---MDLEQSTIFELILAANYLNIKSLLDLTC 110

Query: 122 QLAADIVKGKTPEEIRRTFNIKKDFTPEEEKAVMDEHGWAL 162
           Q  AD++KGKTPEEIR TFNI+ DFTPEEE+AV  E+ WA 
Sbjct: 111 QTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAF 151
Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity). Plays a role during early flowers reproductive development.
Arabidopsis thaliana (taxid: 3702)
>sp|O65674|ASK12_ARATH SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1 Back     alignment and function description
>sp|Q9LNT9|ASK4_ARATH SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1 Back     alignment and function description
>sp|Q9FHW7|SKP1B_ARATH SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1 Back     alignment and function description
>sp|C5FHU9|SKP1_ARTOC E3 ubiquitin ligase complex SCF subunit sconC OS=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) GN=sconC PE=3 SV=1 Back     alignment and function description
>sp|D4ARL8|SKP1_ARTBC E3 ubiquitin ligase complex SCF subunit sconC OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=sconC PE=3 SV=1 Back     alignment and function description
>sp|Q8TGW7|SKP1_ARTOT E3 ubiquitin ligase complex SCF subunit sconC OS=Arthroderma otae GN=sconC PE=2 SV=1 Back     alignment and function description
>sp|Q557E4|SKP1B_DICDI SCF ubiquitin ligase complex protein SKP1b OS=Dictyostelium discoideum GN=fpaB-1 PE=1 SV=1 Back     alignment and function description
>sp|P52285|SKP1A_DICDI SCF ubiquitin ligase complex protein SKP1a OS=Dictyostelium discoideum GN=fpaA PE=1 SV=1 Back     alignment and function description
>sp|Q39255|SKP1A_ARATH SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query164
82470779156 Skp1-like protein 1 [Petunia integrifoli 0.932 0.980 0.5 4e-32
225428047155 PREDICTED: SKP1-like protein 1A [Vitis v 0.932 0.987 0.472 5e-32
82470777155 Skp1-like protein 3 [Petunia integrifoli 0.926 0.980 0.5 5e-32
169647577155 SKP1-like protein 3 [Petunia x hybrida] 0.926 0.980 0.5 6e-32
51292007155 SKP1 [Nicotiana tabacum] 0.926 0.980 0.5 2e-31
169647573155 SKP1-like protein 1 [Petunia x hybrida] 0.926 0.980 0.493 3e-31
118481770161 unknown [Populus trichocarpa] 0.969 0.987 0.472 3e-31
224078347161 predicted protein [Populus trichocarpa] 0.969 0.987 0.472 3e-31
351726854155 uncharacterized protein LOC100306458 [Gl 0.932 0.987 0.490 4e-31
359806806155 uncharacterized protein LOC100798104 [Gl 0.932 0.987 0.490 4e-31
>gi|82470779|gb|ABB77426.1| Skp1-like protein 1 [Petunia integrifolia subsp. inflata] gi|169647579|gb|ACA61786.1| SKP1-like protein 4 [Petunia x hybrida] Back     alignment and taxonomy information
 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 82/164 (50%), Positives = 110/164 (67%), Gaps = 11/164 (6%)

Query: 1   MATTSTVKLRSSDNEVFEVEKQVMIQSGTIRNMIEDDAADGEIPV-QISSRNLAKIVEWC 59
           M+T+  + L+SSD E FEVE+ V ++S TI++MIEDD AD  IP+  ++S+ LAK++E+C
Sbjct: 1   MSTSKMIVLKSSDGETFEVEESVALESQTIKHMIEDDCADSSIPLPNVTSKILAKVIEYC 60

Query: 60  KCMQHRDRNNNNNDNNKEEEEEEEEEWEKKFDEE-VSEDKDLHFGLLLAANYLEIPALLD 118
           K  +H +     +D   EE+        K FD E V  D+   F L+LAANYL I +LLD
Sbjct: 61  K--RHVEAAAKTDDKVSEEDL-------KNFDAEFVKVDQGTLFDLILAANYLNIKSLLD 111

Query: 119 RLCQLAADIVKGKTPEEIRRTFNIKKDFTPEEEKAVMDEHGWAL 162
             CQ  AD++KGKTPEEIR+TFNIK DFTPEEE+ V  E+ WA 
Sbjct: 112 LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENAWAF 155

Source: Petunia integrifolia subsp. inflata

Species: Petunia integrifolia

Genus: Petunia

Family: Solanaceae

Order: Solanales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225428047|ref|XP_002279232.1| PREDICTED: SKP1-like protein 1A [Vitis vinifera] gi|147820987|emb|CAN73136.1| hypothetical protein VITISV_023042 [Vitis vinifera] Back     alignment and taxonomy information
>gi|82470777|gb|ABB77425.1| Skp1-like protein 3 [Petunia integrifolia subsp. inflata] gi|253796264|gb|ACT35736.1| SKP1-like 2 [Petunia x hybrida] Back     alignment and taxonomy information
>gi|169647577|gb|ACA61785.1| SKP1-like protein 3 [Petunia x hybrida] Back     alignment and taxonomy information
>gi|51292007|gb|AAT99735.1| SKP1 [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|169647573|gb|ACA61783.1| SKP1-like protein 1 [Petunia x hybrida] Back     alignment and taxonomy information
>gi|118481770|gb|ABK92824.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224078347|ref|XP_002305525.1| predicted protein [Populus trichocarpa] gi|222848489|gb|EEE86036.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|351726854|ref|NP_001235349.1| uncharacterized protein LOC100306458 [Glycine max] gi|255628601|gb|ACU14645.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|359806806|ref|NP_001241052.1| uncharacterized protein LOC100798104 [Glycine max] gi|255641709|gb|ACU21125.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query164
TAIR|locus:2165825171 ASK2 "AT5G42190" [Arabidopsis 0.981 0.941 0.420 7.9e-30
TAIR|locus:2124281152 SK11 "AT4G34210" [Arabidopsis 0.365 0.394 0.683 8.6e-30
TAIR|locus:2139504152 SK12 "AT4G34470" [Arabidopsis 0.365 0.394 0.666 2.9e-29
TAIR|locus:2204435160 SKP1 "AT1G75950" [Arabidopsis 0.926 0.95 0.442 7.1e-29
DICTYBASE|DDB_G0269230162 fpaA "ubiquitin ligase subunit 0.390 0.395 0.562 1.7e-27
DICTYBASE|DDB_G0273615162 fpaB-2 "ubiquitin ligase subun 0.390 0.395 0.562 1.7e-27
DICTYBASE|DDB_G0273251162 fpaB-1 "ubiquitin ligase subun 0.390 0.395 0.562 1.7e-27
TAIR|locus:2198621163 SK4 "AT1G20140" [Arabidopsis t 0.957 0.963 0.412 3.5e-27
MGI|MGI:103575163 Skp1a "S-phase kinase-associat 0.390 0.392 0.593 7.4e-27
RGD|1359648163 Skp1 "S-phase kinase-associate 0.390 0.392 0.593 7.4e-27
TAIR|locus:2165825 ASK2 "AT5G42190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 71/169 (42%), Positives = 100/169 (59%)

Query:     1 MATTSTVKLRSSDNEVFEVEKQVMIQSGTIRNMIEDDAADGEIPV-QISSRNLAKIVEWC 59
             M+T   + L+SSD E FE+++ V ++S TI++MIEDD  D  IP+  ++S+ L+K++E+C
Sbjct:     1 MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query:    60 KC-MQHRDRXXXXXXXXXXXXXXXXXXXXXXXXXXV--SE----DKDLHFGLLLAANYLE 112
             K  ++  ++                             SE    D+   F L+LAANYL 
Sbjct:    61 KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query:   113 IPALLDRLCQLAADIVKGKTPEEIRRTFNIKKDFTPEEEKAVMDEHGWA 161
             I  LLD  CQ  AD++KGKTPEEIR+TFNIK DFTPEEE+ V  E+ WA
Sbjct:   121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWA 169
GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0005737 "cytoplasm" evidence=NAS
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;RCA;TAS
GO:0019005 "SCF ubiquitin ligase complex" evidence=NAS
GO:0005515 "protein binding" evidence=IPI
GO:0009793 "embryo development ending in seed dormancy" evidence=IGI
GO:0042023 "DNA endoreduplication" evidence=RCA
GO:0042752 "regulation of circadian rhythm" evidence=RCA
GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0043248 "proteasome assembly" evidence=RCA
GO:0051510 "regulation of unidimensional cell growth" evidence=RCA
GO:0051788 "response to misfolded protein" evidence=RCA
TAIR|locus:2124281 SK11 "AT4G34210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139504 SK12 "AT4G34470" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204435 SKP1 "AT1G75950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0269230 fpaA "ubiquitin ligase subunit SKP1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0273615 fpaB-2 "ubiquitin ligase subunit SKP1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0273251 fpaB-1 "ubiquitin ligase subunit SKP1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2198621 SK4 "AT1G20140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:103575 Skp1a "S-phase kinase-associated protein 1A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1359648 Skp1 "S-phase kinase-associated protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q3ZCF3SKP1_BOVINNo assigned EC number0.43550.92070.9263yesno
Q5KU00SKP1_ASPORNo assigned EC number0.41350.92680.9440yesno
Q9WTX5SKP1_MOUSENo assigned EC number0.43900.92680.9325yesno
Q6PEC4SKP1_RATNo assigned EC number0.43900.92680.9325yesno
O49484ASK11_ARATHNo assigned EC number0.46580.90850.9802yesno
Q557E4SKP1B_DICDINo assigned EC number0.42130.93290.9444yesno
Q9Y709SKP1_SCHPONo assigned EC number0.39640.88410.9006yesno
Q5ZKF5SKP1_CHICKNo assigned EC number0.43550.92070.9263yesno
P52285SKP1A_DICDINo assigned EC number0.42130.93290.9444yesno
Q4WTT8SKP1_ASPFUNo assigned EC number0.41250.92680.9620yesno
O65674ASK12_ARATHNo assigned EC number0.45960.90850.9802yesno
Q5BAX8SKP1_EMENINo assigned EC number0.41660.90240.9192yesno
P63209SKP1_CAVPONo assigned EC number0.43550.92070.9263yesno
P63208SKP1_HUMANNo assigned EC number0.43550.92070.9263yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00036131001
SubName- Full=Putative uncharacterized protein (Chromosome chr3 scaffold_8, whole genome shotgun sequence); (155 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00016431001
SubName- Full=Putative uncharacterized protein (Chromosome chr11 scaffold_13, whole genome shot [...] (120 aa)
    ••  0.834

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query164
COG5201158 COG5201, SKP1, SCF ubiquitin ligase, SKP1 componen 4e-28
pfam0146678 pfam01466, Skp1, Skp1 family, dimerisation domain 1e-23
smart00512104 smart00512, Skp1, Found in Skp1 protein family 7e-21
pfam0393161 pfam03931, Skp1_POZ, Skp1 family, tetramerisation 4e-17
>gnl|CDD|227528 COG5201, SKP1, SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score =  101 bits (254), Expect = 4e-28
 Identities = 58/160 (36%), Positives = 97/160 (60%), Gaps = 7/160 (4%)

Query: 4   TSTVKLRSSDNEVFEVEKQVMIQSGTIRNMIED-DAADGEIPV-QISSRNLAKIVEWCKC 61
            S ++L S D E+F V++ +  +S  I+NM+ D  A +  IP   + S  L K+ EW + 
Sbjct: 1   MSMIELESIDGEIFRVDENIAERSILIKNMLCDSTACNYPIPAPNVRSSVLMKVQEWME- 59

Query: 62  MQHRDRNNNNNDNNKEEEEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLC 121
             H    + + ++ +  + +  + W++ F   +  D+++   + LAANYLEI  LLD  C
Sbjct: 60  -HHTSSLSEDENDLEIRKSKPSDFWDRFF---MEVDQEMLLEICLAANYLEIKPLLDLGC 115

Query: 122 QLAADIVKGKTPEEIRRTFNIKKDFTPEEEKAVMDEHGWA 161
           ++ A++++GK+PEEIR TFNI+ DFTPEEE+ +  E+ WA
Sbjct: 116 KIVAEMIRGKSPEEIRETFNIENDFTPEEERRIRKENEWA 155

Length = 158
>gnl|CDD|201810 pfam01466, Skp1, Skp1 family, dimerisation domain Back     alignment and domain information
>gnl|CDD|214704 smart00512, Skp1, Found in Skp1 protein family Back     alignment and domain information
>gnl|CDD|217800 pfam03931, Skp1_POZ, Skp1 family, tetramerisation domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 164
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 100.0
COG5201158 SKP1 SCF ubiquitin ligase, SKP1 component [Posttra 100.0
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 99.97
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 99.95
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 99.77
KOG3473112 consensus RNA polymerase II transcription elongati 99.67
PHA02713 557 hypothetical protein; Provisional 98.64
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 98.55
PHA03098 534 kelch-like protein; Provisional 98.33
PHA02790 480 Kelch-like protein; Provisional 98.3
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 98.24
KOG4441 571 consensus Proteins containing BTB/POZ and Kelch do 98.09
KOG4350 620 consensus Uncharacterized conserved protein, conta 95.86
KOG4682 488 consensus Uncharacterized conserved protein, conta 95.08
KOG2716230 consensus Polymerase delta-interacting protein PDI 94.98
KOG3433203 consensus Protein involved in meiotic recombinatio 93.9
COG5124209 Protein predicted to be involved in meiotic recomb 93.04
KOG0783 1267 consensus Uncharacterized conserved protein, conta 93.0
PF11822 317 DUF3342: Domain of unknown function (DUF3342); Int 92.25
PF03962188 Mnd1: Mnd1 family; InterPro: IPR005647 This family 81.85
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=3.3e-49  Score=291.76  Aligned_cols=154  Identities=47%  Similarity=0.817  Sum_probs=138.0

Q ss_pred             CeEEEEcCCCCEEEecHHHHHHHHHHHHHHHhcC-CCC--cccce-ecHHHHHHHHHHhcccccCCCCCCCCCCCCchhh
Q 038532            5 STVKLRSSDNEVFEVEKQVMIQSGTIRNMIEDDA-ADG--EIPVQ-ISSRNLAKIVEWCKCMQHRDRNNNNNDNNKEEEE   80 (164)
Q Consensus         5 ~~i~l~s~DG~~f~v~~~~a~~S~~l~~~~~~~~-~~~--~I~l~-v~s~~L~~Ii~~~~~~~h~~~~~~~~~~~~~~~~   80 (164)
                      ++|+|+|+||++|.|+.++|++|.+|++++.+.| ..+  +|||| |+|.||++|++||+  ||+++++...+....+..
T Consensus         5 ~~ikL~SsDG~~f~ve~~~a~~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~--~Hk~d~~~~~~~~~~~~~   82 (162)
T KOG1724|consen    5 KKIKLESSDGEIFEVEEEVARQSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCK--KHKDDDPANPEDKELPEE   82 (162)
T ss_pred             CeEEEEccCCceeehhHHHHHHhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHH--Hccccccccccccccccc
Confidence            7999999999999999999999999999998765 334  89999 99999999999999  999886543321101233


Q ss_pred             hhHHHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCCCHHHHHHHHHHcCC
Q 038532           81 EEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRRTFNIKKDFTPEEEKAVMDEHGW  160 (164)
Q Consensus        81 ~~~~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~~d~t~eee~~i~~e~~W  160 (164)
                      ..+++||++|   ++++...||+|+.|||||+|++|+++||+.+|++++||||+|||+.|||++|+||||++++++++.|
T Consensus        83 ~~i~~WD~~F---lk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f~I~~d~t~eE~~~~~~e~~~  159 (162)
T KOG1724|consen   83 TDIPEWDAEF---LKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIFNIENDETPEEEEAIRKENEW  159 (162)
T ss_pred             CCccHHHHHH---HhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHcCCCCCCChhHHHHHhhcccc
Confidence            4499999999   8899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccC
Q 038532          161 ALH  163 (164)
Q Consensus       161 ~~~  163 (164)
                      +++
T Consensus       160 ~~~  162 (162)
T KOG1724|consen  160 AFE  162 (162)
T ss_pred             ccC
Confidence            985

>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query164
2p1m_A160 Tir1-ask1 Complex Structure Length = 160 7e-26
3l2o_A149 Structure-Based Mechanism Of Dimerization-Dependent 2e-24
1fqv_B149 Insights Into Scf Ubiquitin Ligases From The Struct 4e-24
2ast_A159 Crystal Structure Of The Skp1-Skp2-Cks1 Complex Len 4e-24
1p22_B145 Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex 5e-24
2e31_B166 Structural Basis For Selection Of Glycosylated Subs 7e-24
1fs1_B141 Insights Into Scf Ubiquitin Ligases From The Struct 5e-21
3mks_A169 Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH 5e-19
1ldk_D133 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 5e-18
1nex_A169 Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp 3e-17
>pdb|2P1M|A Chain A, Tir1-ask1 Complex Structure Length = 160 Back     alignment and structure 
Iteration: 1

 Score =  112 bits (281), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 93/157 (59%), Gaps = 4/157 (2%)
Query: 7   VKLRSSDNEVFEVEKQVMIQSGTIRNMIEDDAADGEIPV-QISSRNLAKIVEWCKCMQHR 65
           + L+SSD E FEVE+ V ++S TI +M+EDD  D  +P+  ++S+ LAK++E+CK  +H 
Sbjct: 6   IVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCK--RHV 63
Query: 66  DRXXXXXXXXXXXXXXXXXXXXXXXXXXVSEDKDLHFGLLLAANYLEIPALLDRLCQLAA 125
           +                           +  D+   F L+LAANYL I  LLD  CQ  A
Sbjct: 64  E-AAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVA 122
Query: 126 DIVKGKTPEEIRRTFNIKKDFTPEEEKAVMDEHGWAL 162
           D++KGKTPEEIR TFNIK DFTPEEE+ V  E+ WA 
Sbjct: 123 DMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAF 159
>pdb|3L2O|A Chain A, Structure-Based Mechanism Of Dimerization-Dependent Ubiquitination By The Scffbx4 Ubiquitin Ligase Length = 149 Back     alignment and structure
>pdb|1FQV|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 149 Back     alignment and structure
>pdb|1P22|B Chain B, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 145 Back     alignment and structure
>pdb|2E31|B Chain B, Structural Basis For Selection Of Glycosylated Substrate By Scffbs1 Ubiquitin Ligase Length = 166 Back     alignment and structure
>pdb|1FS1|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 141 Back     alignment and structure
>pdb|3MKS|A Chain A, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 169 Back     alignment and structure
>pdb|1LDK|D Chain D, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 133 Back     alignment and structure
>pdb|1NEX|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 169 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query164
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 2e-36
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 3e-36
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 4e-35
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 1e-33
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 1e-20
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 2e-16
2fnj_C96 Transcription elongation factor B polypeptide 1; b 3e-16
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Length = 160 Back     alignment and structure
 Score =  122 bits (307), Expect = 2e-36
 Identities = 70/160 (43%), Positives = 99/160 (61%), Gaps = 4/160 (2%)

Query: 3   TTSTVKLRSSDNEVFEVEKQVMIQSGTIRNMIEDDAADGEIPV-QISSRNLAKIVEWCKC 61
           +   + L+SSD E FEVE+ V ++S TI +M+EDD  D  +P+  ++S+ LAK++E+CK 
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 62  MQHRDRNNNNNDNNKEEEEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLC 121
                 +           +++ + W+  F +    D+   F L+LAANYL I  LLD  C
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKI---DQATLFELILAANYLNIKNLLDLTC 118

Query: 122 QLAADIVKGKTPEEIRRTFNIKKDFTPEEEKAVMDEHGWA 161
           Q  AD++KGKTPEEIR TFNIK DFTPEEE+ V  E+ WA
Sbjct: 119 QTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWA 158
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Length = 141 Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Length = 169 Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Length = 99 Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Length = 112 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Length = 96 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query164
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 100.0
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 100.0
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 100.0
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 100.0
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 99.93
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 99.91
2fnj_C96 Transcription elongation factor B polypeptide 1; b 99.91
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.86
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 98.97
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 98.88
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 98.81
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 98.78
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 98.77
3b84_A119 Zinc finger and BTB domain-containing protein 48; 98.76
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 98.74
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 98.67
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 98.67
2vpk_A116 Myoneurin; transcription regulation, transcription 98.64
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 98.64
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 98.59
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 98.48
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 98.46
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 98.43
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 98.41
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 98.34
3i3n_A 279 Kelch-like protein 11; structural genomics, BTB, K 98.33
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 98.32
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 98.16
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 88.62
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
Probab=100.00  E-value=9.5e-56  Score=330.50  Aligned_cols=157  Identities=40%  Similarity=0.745  Sum_probs=132.4

Q ss_pred             CCCCCeEEEEcCCCCEEEecHHHHHHHHHHHHHHHhcCC-----C--Ccccce-ecHHHHHHHHHHhcccccCCCCCCCC
Q 038532            1 MATTSTVKLRSSDNEVFEVEKQVMIQSGTIRNMIEDDAA-----D--GEIPVQ-ISSRNLAKIVEWCKCMQHRDRNNNNN   72 (164)
Q Consensus         1 m~~~~~i~l~s~DG~~f~v~~~~a~~S~~l~~~~~~~~~-----~--~~I~l~-v~s~~L~~Ii~~~~~~~h~~~~~~~~   72 (164)
                      ||+ ++|+|+|+||++|.|++.+|++|++|++|+++.+.     +  .+|||| |++.+|++|++||+  ||+.++++..
T Consensus         4 m~~-~~i~L~SsDG~~F~V~~~vA~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~--~h~~~~~~~~   80 (169)
T 3v7d_A            4 MVT-SNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAE--HHRDSNFPDE   80 (169)
T ss_dssp             --C-CEEEEECTTCCEEEEEHHHHTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHH--HTTTCCCCC-
T ss_pred             CCC-CeEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHH--HcccCCCccc
Confidence            676 89999999999999999999999999999997653     3  789999 99999999999999  9998875432


Q ss_pred             CCCCchhhhhHHHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCCCHHHHH
Q 038532           73 DNNKEEEEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRRTFNIKKDFTPEEEK  152 (164)
Q Consensus        73 ~~~~~~~~~~~~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~~d~t~eee~  152 (164)
                      +..+.+....+++||++|   ++++...||+|+.|||||+|++|+++||++||++|+||||+|||++|||++||||||++
T Consensus        81 ~~~~~~~~~~i~~wD~~F---l~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd~t~eEe~  157 (169)
T 3v7d_A           81 DDDDSRKSAPVDSWDREF---LKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEA  157 (169)
T ss_dssp             -------CCCCCHHHHHH---TCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHH
T ss_pred             ccccccccccccHHHHHH---HcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHH
Confidence            222223456789999999   88999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCccC
Q 038532          153 AVMDEHGWALH  163 (164)
Q Consensus       153 ~i~~e~~W~~~  163 (164)
                      +||+||+|+|+
T Consensus       158 ~ir~en~W~~~  168 (169)
T 3v7d_A          158 AIRRENEWAED  168 (169)
T ss_dssp             HHHTTC-----
T ss_pred             HHHHhcccccc
Confidence            99999999997
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 164
d1nexa170 a.157.1.1 (A:116-185) Centromere DNA-binding prote 9e-22
d1hv2a_99 d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomy 3e-18
d1fs1b155 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, 1e-17
d2c9wc196 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens 9e-17
d1fs1b261 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Sk 3e-16
d1nexa272 d.42.1.1 (A:4-103) Centromere DNA-binding protein 5e-15
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 70 Back     information, alignment and structure

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.3 bits (201), Expect = 9e-22
 Identities = 34/71 (47%), Positives = 54/71 (76%), Gaps = 3/71 (4%)

Query: 84  EEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRRTFNIK 143
           + W+++F   +  D+++ + ++LAANYL I  LLD  C++ A++++G++PEEIRRTFNI 
Sbjct: 2   DSWDREF---LKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIV 58

Query: 144 KDFTPEEEKAV 154
            DFTPEEE A+
Sbjct: 59  NDFTPEEEAAI 69
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 99 Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Length = 96 Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query164
d1nexa170 Centromere DNA-binding protein complex Cbf3 subuni 99.96
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 99.93
d1fs1b155 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 99.91
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 99.89
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 99.82
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 99.8
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 98.89
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 98.69
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=7.1e-31  Score=166.69  Aligned_cols=69  Identities=49%  Similarity=0.998  Sum_probs=66.6

Q ss_pred             HHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCCCHHHHHHHH
Q 038532           84 EEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRRTFNIKKDFTPEEEKAVM  155 (164)
Q Consensus        84 ~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~~d~t~eee~~i~  155 (164)
                      ++||++|   ++++.+.|++|+.|||||+|++|+++||++||.+|+||||+|||++|||++|+||||++++|
T Consensus         2 ~~wD~~F---~~~d~~~L~~li~AAnyL~I~~Ll~l~c~~vA~~ikgkt~eeiR~~f~I~~D~t~eEe~~ir   70 (70)
T d1nexa1           2 DSWDREF---LKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIR   70 (70)
T ss_dssp             CHHHHHH---TCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHHTCC
T ss_pred             cHHHHHH---HhcCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccCCHHHHHHHhCCCCCCCHHHHHhcC
Confidence            5899999   88999999999999999999999999999999999999999999999999999999998875
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure