Citrus Sinensis ID: 038536

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-
Protein Sequence
MGKILIFMGQYPQISEEAGEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSNGAGNSETAHIAVRVKEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALLQTILLSIITSPFNHYKKVNVLSHSVANATSDILKP
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccHcccccccHHHHHcHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEcccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHccccHHHHHHHEEHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MGKILIFMgqypqiseeagefsmwlvPASSVIQLFNHLFDYFKHNFLTIlsgllpnpkleTSVLSVCLATISnlftipdglgtaasnrvsngagnsetAHIAVRVKEVvdhgttmaPLVCLLVILESLKCVLSGvargcgwqdfGAYVYLAASYLCGIPVAAALGFWLksrgpgiwiggiQAGALLQTILLSIItspfnhykKVNVLSHsvanatsdilkp
Flexible Loop (DISEMBL)
MGKILIFMGQYPQISEEAGEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSNGAGNSETAHIAVRVKEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALLQTILLSIITSPFNHYKKVNVLshsvanatsdilkp
Low Complexity Region (SEG)
MGKILIFMGQYPQISEEAGEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSNGAGNSETAHIAVRVKEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGAllqtillsiitsPFNHYKKVNVLSHSVANATSDILKP
Disordered region (IsUnstruct)
***ILIFMGQYPQISEEAGEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAA***********ETAHIAVRVKEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALLQTILLSIITSPFNHYKKVNVLSHSV**********
Disordered Region (DISOPRED)
*GKILIFMGQYPQISEEAGEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSNGAGNSETAHIAVRVKEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALLQTILLSIITSPFNHYKKVNV***************
Disordered Region (DISEMBL)
MGKILIFMGQYPQISEEAGEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSNGAGNSETAHIAVRVKEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALLQTILLSIITSPFNHYKKVNVLSHSVANATSDILKP
Disordered Region (DISPRO)
**K*LIFMGQYPQISEEAGEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSNGAGNSETAHIAVRVKEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALLQTILLSIITSPFNHYKKVNVLSHSVANA*******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKILIFMGQYPQISEEAGEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSNGAGNSETAHIAVRVKEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALLQTILLSIITSPFNHYKKVNVLSHSVANATSDILKP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	221	2.2.26 [Sep-21-2011]
Q8RWF5	483	MATE efflux family protei	no	no	0.773	0.354	0.406	7e-32
Q8GXM8	476	MATE efflux family protei	no	no	0.778	0.361	0.395	7e-30
Q9SIA1	477	MATE efflux family protei	no	no	0.773	0.358	0.401	8e-30
Q9SIA3	476	MATE efflux family protei	no	no	0.787	0.365	0.367	2e-27
Q9SIA4	476	MATE efflux family protei	no	no	0.805	0.373	0.375	4e-27
Q9SIA5	476	MATE efflux family protei	no	no	0.805	0.373	0.356	1e-25
Q9LUH2	477	MATE efflux family protei	no	no	0.746	0.345	0.346	2e-20
Q9LUH3	469	MATE efflux family protei	no	no	0.782	0.368	0.316	3e-18
Q9LYT3	507	Protein TRANSPARENT TESTA	no	no	0.805	0.351	0.303	8e-16
Q9USK3	539	Uncharacterized transport	yes	no	0.610	0.250	0.307	2e-07

>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1

 Score =  137 bits (344), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 85/209 (40%), Positives = 116/209 (55%), Gaps = 38/209 (18%)

Query: 20  EFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPD 79
           +F  + +P++++  +   LF+     FL + SGLLPNPKLETSVLS+CL T S  + IP 
Sbjct: 254 QFFQYGIPSAAMTTIEWSLFE-----FLILSSGLLPNPKLETSVLSICLTTSSLHYVIPM 308

Query: 80  GLGTAASNRVSN--GAGNSETAHIAV------------------------------RVKE 107
           G+G A S RVSN  GAGN E A +AV                                KE
Sbjct: 309 GIGAAGSIRVSNELGAGNPEVARLAVFAGIFLWFLEATICSTLLFICRDIFGYAFSNSKE 368

Query: 108 VVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFW 167
           VVD+ T ++PL+C+  +++    VL GVARG GWQ  GA+  + A YL G PV   LGFW
Sbjct: 369 VVDYVTELSPLLCISFLVDGFSAVLGGVARGSGWQHIGAWANVVAYYLLGAPVGLFLGFW 428

Query: 168 LKSRGPGIWIGGIQAGALLQTILLSIITS 196
               G G+WI G+  G+  Q I+L+I+T+
Sbjct: 429 CHMNGKGLWI-GVVVGSTAQGIILAIVTA 456

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1

 Score =  130 bits (327), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 83/210 (39%), Positives = 113/210 (53%), Gaps = 38/210 (18%)

Query: 26  VPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAA 85
           VP++ +I L   LF+      L + SGLLPNPKLETSVLS+CL   +  + IP G+  A 
Sbjct: 257 VPSAGLICLEWWLFE-----LLILCSGLLPNPKLETSVLSICLTIGTLHYVIPSGVAAAV 311

Query: 86  SNRVSN--GAGNSETAHIAV------------------------------RVKEVVDHGT 113
           S RVSN  GAGN + A ++V                                KEVVD+  
Sbjct: 312 STRVSNKLGAGNPQVARVSVLAGLCLWLVESAFFSTLLFTCRNIIGYTFSNSKEVVDYVA 371

Query: 114 TMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGP 173
            ++PL+CL  IL+ L  VL+GVARGCGWQ  GA + + A YL G PV   L F  +  G 
Sbjct: 372 DISPLLCLSFILDGLTAVLNGVARGCGWQHIGALINVVAYYLVGAPVGVYLAFSREWNGK 431

Query: 174 GIWIGGIQAGALLQTILLSIITSPFNHYKK 203
           G+W  G+  G+ +Q  LL+I+T+  N  ++
Sbjct: 432 GLWC-GVMVGSAVQATLLAIVTASMNWKEQ 460

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2

 Score =  130 bits (326), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 84/209 (40%), Positives = 114/209 (54%), Gaps = 38/209 (18%)

Query: 20  EFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPD 79
           +F  + +P++++  +   LF+      L + SGLLPNPKLETSVLS+CL T S    IP 
Sbjct: 254 QFFQYGIPSAAMTTIEWSLFE-----LLILSSGLLPNPKLETSVLSICLTTSSLHCVIPM 308

Query: 80  GLGTAASNRVSN--GAGNSETAHIAV------------------------------RVKE 107
           G+G A S R+SN  GAGN E A +AV                                KE
Sbjct: 309 GIGAAGSTRISNELGAGNPEVARLAVFAGIFLWFLEATICSTLLFTCKNIFGYAFSNSKE 368

Query: 108 VVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFW 167
           VVD+ T ++ L+CL  +++    VL GVARG GWQ+ GA+  + A YL G PV   LGFW
Sbjct: 369 VVDYVTELSSLLCLSFMVDGFSSVLDGVARGSGWQNIGAWANVVAYYLLGAPVGFFLGFW 428

Query: 168 LKSRGPGIWIGGIQAGALLQTILLSIITS 196
               G G+WIG I  G+  Q I+L+I+T+
Sbjct: 429 GHMNGKGLWIGVI-VGSTAQGIILAIVTA 456

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/215 (36%), Positives = 110/215 (51%), Gaps = 41/215 (19%)

Query: 29  SSVIQLFNH--------LFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDG 80
           SSV Q F +          +++    L + SGLL NPKLETSVLS+CL T +  + IP G
Sbjct: 247 SSVKQFFRYGVPSAAMLCLEWWLFELLILCSGLLQNPKLETSVLSICLTTATLHYVIPVG 306

Query: 81  LGTAASNRVSN--GAGNSETAHIAV------------------------------RVKEV 108
           +  A S RVSN  GAG  + A ++V                                KEV
Sbjct: 307 VAAAVSTRVSNKLGAGIPQVARVSVLAGLCLWLVESSFFSILLFAFRNIIGYAFSNSKEV 366

Query: 109 VDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWL 168
           VD+   ++PL+CL  +L+    VL+GVARGCGWQ  GA   + A YL G PV   L F  
Sbjct: 367 VDYVADLSPLLCLSFVLDGFTAVLNGVARGCGWQHIGALNNVVAYYLVGAPVGIYLAFSC 426

Query: 169 KSRGPGIWIGGIQAGALLQTILLSIITSPFNHYKK 203
           +  G G+W  G+  G+ +Q I+L+I+T+  N  ++
Sbjct: 427 ELNGKGLWC-GVVVGSAVQAIILAIVTASMNWKEQ 460

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1

 Score =  121 bits (303), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/216 (37%), Positives = 113/216 (52%), Gaps = 38/216 (17%)

Query: 20  EFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPD 79
           +F  + VP+++++ L   LF+      L + SGLLPNPKLETSVLS+CL T S  + IP 
Sbjct: 251 QFFHFGVPSAAMVCLEWWLFE-----LLILCSGLLPNPKLETSVLSICLTTASLHYVIPG 305

Query: 80  GLGTAASNRVSN--GAGNSETAHIAV------------------------------RVKE 107
           G+  A S RVSN  GAG  + A ++V                                KE
Sbjct: 306 GVAAAVSTRVSNKLGAGIPQVARVSVLAGLCLWLVESAFFSTLLFTCRNIIGYAFSNSKE 365

Query: 108 VVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFW 167
           VVD+   + PL+CL  IL+    VL+GVARG GWQ  GA   + A YL G PV   L F 
Sbjct: 366 VVDYVANLTPLLCLSFILDGFTAVLNGVARGSGWQHIGALNNVVAYYLVGAPVGVYLAFN 425

Query: 168 LKSRGPGIWIGGIQAGALLQTILLSIITSPFNHYKK 203
            +  G G+W  G+  G+ +Q I+L+ +T+  N  ++
Sbjct: 426 RELNGKGLWC-GVVVGSAVQAIILAFVTASINWKEQ 460

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1

 Score =  116 bits (290), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/216 (35%), Positives = 112/216 (51%), Gaps = 38/216 (17%)

Query: 20  EFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPD 79
           +F  + +P++++I L   LF+      L + SGLLPNPKLETSVLS+CL   +  + I  
Sbjct: 251 QFFQYGIPSAAMICLEWWLFE-----ILILCSGLLPNPKLETSVLSICLTIETLHYVISA 305

Query: 80  GLGTAASNRVSN--GAGNSETAHIAV------------------------------RVKE 107
           G+  A S RVSN  GAGN + A ++V                                KE
Sbjct: 306 GVAAAVSTRVSNNLGAGNPQVARVSVLAGLCLWIVESAFFSILLFTCRNIIGYAFSNSKE 365

Query: 108 VVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFW 167
           V+D+   + PL+CL  IL+    VL+GVARG GWQ  GA+    + YL G PV   L F 
Sbjct: 366 VLDYVADLTPLLCLSFILDGFTAVLNGVARGSGWQHIGAWNNTVSYYLVGAPVGIYLAFS 425

Query: 168 LKSRGPGIWIGGIQAGALLQTILLSIITSPFNHYKK 203
            +  G G+W  G+  G+ +Q  +L+I+T+  N  ++
Sbjct: 426 RELNGKGLWC-GVVVGSTVQATILAIVTASINWKEQ 460

Efflux carrier for plant-derived alkaloids, antibiotics, heavy metal and other toxic compounds. Involved in cadmium detoxification. Requires probably a proton-motive force for the efflux.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/199 (34%), Positives = 101/199 (50%), Gaps = 34/199 (17%)

Query: 40  DYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GAGNSE 97
           +Y+    L  L+G++PNP++ TS++++C+ T +  + +  GL  AAS RVSN  GAGN +
Sbjct: 278 EYWAFEILVFLAGVMPNPEINTSLVAICVNTEAISYMLTYGLSAAASTRVSNELGAGNVK 337

Query: 98  TAHIAVRVKEVVDHGTTMAPLVCLLV------------------------------ILES 127
            A  A  V   +     +  ++ LLV                               L+S
Sbjct: 338 GAKKATSVSVKLSLVLALGVVIVLLVGHDGWVGLFSDSYVIKEEFASLRFFLAASITLDS 397

Query: 128 LKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALLQ 187
           ++ VLSGVARGCGWQ     + LA  YL G+P+AA  GF LK    G+WIG I  G   Q
Sbjct: 398 IQGVLSGVARGCGWQRLVTVINLATFYLIGMPIAAFCGFKLKFYAKGLWIGLI-CGIFCQ 456

Query: 188 TILLSIITSPFNHYKKVNV 206
           +  L ++T  F  + K+NV
Sbjct: 457 SSSLLLMT-IFRKWTKLNV 474

Required for protection of the roots from inhibitory compounds. When expressed in an heterologous system, confers resistance to tetramethylammonium chloride.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 107/212 (50%), Gaps = 39/212 (18%)

Query: 26  VPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAA 85
           +P+++++ L     +Y+    L  L+GL+ NP++ TS++++C+ T S  + +  GL  A 
Sbjct: 261 IPSAAMVCL-----EYWAFEILVFLAGLMRNPEITTSLVAICVNTESISYMLTCGLSAAT 315

Query: 86  SNRVSN--GAGNSETAH----IAVRVKEVVDHGTTMAPLV-------------------- 119
           S RVSN  GAGN + A     ++V++  V+  G  +A LV                    
Sbjct: 316 STRVSNELGAGNVKGAKKATSVSVKLSLVLALGVVIAILVGHDAWVGLFSNSHVIKEGFA 375

Query: 120 ------CLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGP 173
                    + L+S++ VLSGVARGCGWQ     + L   YL G+P++   GF LK    
Sbjct: 376 SLRFFLAASITLDSIQGVLSGVARGCGWQRLATVINLGTFYLIGMPISVLCGFKLKLHAK 435

Query: 174 GIWIGGIQAGALLQTILLSIITSPFNHYKKVN 205
           G+WIG I  G   Q+  L ++T  F  + K+ 
Sbjct: 436 GLWIGLI-CGMFCQSASLLLMT-IFRKWTKLT 465

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 33/211 (15%)

Query: 39  FDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GAGNS 96
            + + +  L I+SGLL NP +    +S+C+  ++       GL  A S RVSN  GAGN 
Sbjct: 289 LEIWYNQGLVIISGLLSNPTISLDAISICMYYLNWDMQFMLGLSAAISVRVSNELGAGNP 348

Query: 97  ETAHIAVRV------------------------------KEVVDHGTTMAPLVCLLVILE 126
             A ++V V                               EV+   + + PL+ + + L 
Sbjct: 349 RVAMLSVVVVNITTVLISSVLCVIVLVFRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLN 408

Query: 127 SLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALL 186
            ++ +LSGVA G GWQ   AYV L   Y+ G+P+   LGF       GIW G I AG +L
Sbjct: 409 GIQPILSGVAIGSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMI-AGVIL 467

Query: 187 QTILLSIITSPFNHYKKVNVLSHSVANATSD 217
           QT+ L ++T   N   +V   +  V  + ++
Sbjct: 468 QTLTLIVLTLKTNWTSEVENAAQRVKTSATE 498

May be involved in vacuolar transport of flavonoids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9USK3|YJ2D_SCHPO Uncharacterized transporter C4B3.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4B3.13 PE=3 SV=1

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 76/169 (44%), Gaps = 34/169 (20%)

Query: 40  DYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GAGNSE 97
           +Y+    +T  SG+L   +L +  +SV   T +  + +  G+  AA+ RV N  GAGN++
Sbjct: 336 EYWAFELVTFASGVLGTTELAS--MSVLSTTSTLSYNLAFGVAAAAATRVGNLIGAGNTK 393

Query: 98  TAHIAVRV------------------------------KEVVDHGTTMAPLVCLLVILES 127
            A +A  V                              K+VV    T+ PLV L+ I ++
Sbjct: 394 LAKLATHVSINLGAAIGVIIAVILFLTRNTWTYIFTSDKDVVALVATIIPLVALINIADN 453

Query: 128 LKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIW 176
            +CV  G+ RG G Q  G  V   A YL G+PVA  L F L     G+W
Sbjct: 454 TQCVAGGLLRGQGRQRIGGVVNFIAYYLLGLPVAIILCFKLDWGLYGLW 502

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
255582923	477	TRANSPARENT TESTA 12 protein, putative [	0.877	0.406	0.495	6e-49
224108371	482	predicted protein [Populus trichocarpa]	0.882	0.404	0.493	1e-46
224108375	486	predicted protein [Populus trichocarpa]	0.819	0.372	0.488	5e-45
224101797	456	predicted protein [Populus trichocarpa]	0.873	0.423	0.467	3e-44
255582921	490	TRANSPARENT TESTA 12 protein, putative [	0.904	0.408	0.453	7e-44
297737740	443	unnamed protein product [Vitis vinifera]	0.837	0.417	0.508	8e-44
147787625	481	hypothetical protein VITISV_022104 [Viti	0.837	0.384	0.508	1e-43
225424132	481	PREDICTED: MATE efflux family protein 5	0.837	0.384	0.508	1e-43
255582915	476	TRANSPARENT TESTA 12 protein, putative [	0.651	0.302	0.576	1e-42
255582919	508	TRANSPARENT TESTA 12 protein, putative [	0.809	0.352	0.470	2e-42

>gi|255582923|ref|XP_002532233.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223528090|gb|EEF30164.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis]

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 115/232 (49%), Positives = 145/232 (62%), Gaps = 38/232 (16%)

Query: 19  GEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIP 78
           G+F    +P++ +I L     +++    LT+LSGLLPNP+LETSVLSVCLATI+ L+TIP
Sbjct: 246 GQFIGLAIPSAVMICL-----EWWSFELLTMLSGLLPNPRLETSVLSVCLATITTLYTIP 300

Query: 79  DGLGTAASNRVSN--GAGNSETAHIAV------------------------------RVK 106
           DG+G AAS RVSN  GAGN++ A++AV                                K
Sbjct: 301 DGVGAAASTRVSNELGAGNAKAAYVAVWCAMVVATIQSIAVSAILLVTRHVFGYVFSNEK 360

Query: 107 EVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGF 166
           EVVD+ T MAPLV L VIL+SL+  LSG+ARGCGWQ+ GAYV L A Y+CGIPVAA LGF
Sbjct: 361 EVVDYVTAMAPLVSLSVILDSLQGTLSGIARGCGWQNLGAYVNLVAYYICGIPVAAVLGF 420

Query: 167 WLKSRGPGIWIGGIQAGALLQTILLSIITSPFNHYKKVNVLSHSVANATSDI 218
           WL  RG G+WI GIQ G+ +Q +LL+IIT   N  ++       V   TS I
Sbjct: 421 WLNLRGKGLWI-GIQVGSFVQIVLLAIITRSTNWEQQAMKAKERVLEGTSLI 471

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108371|ref|XP_002314825.1| predicted protein [Populus trichocarpa] gi|222863865|gb|EEF00996.1| predicted protein [Populus trichocarpa]

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 115/233 (49%), Positives = 141/233 (60%), Gaps = 38/233 (16%)

Query: 11  YPQISEEAGEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLAT 70
           Y ++    GEF  + +P++ +I L     +++    L +LSG LPNP+LETSVLSVCL T
Sbjct: 247 YKELFYGVGEFFRFAIPSAVMICL-----EWWSFELLILLSGFLPNPQLETSVLSVCLMT 301

Query: 71  ISNLFTIPDGLGTAASNRVSN--GAGNSETAHIAV----------------------RV- 105
           IS L+ IP GLG AAS RV+N  GAGN   A +AV                      RV 
Sbjct: 302 ISTLYGIPFGLGAAASTRVANELGAGNPRAARLAVYAAMFLAVSETIIVTSALFASRRVF 361

Query: 106 -------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGI 158
                  KEV+D+ TTMAPLVCL VI++SL+ VLSGVARGCGWQ  GAY+ L A YLCGI
Sbjct: 362 GYLFSNEKEVIDYVTTMAPLVCLSVIMDSLQGVLSGVARGCGWQHIGAYINLGAFYLCGI 421

Query: 159 PVAAALGFWLKSRGPGIWIGGIQAGALLQTILLSIITSPFNHYKKVNVLSHSV 211
           P AA L FWL   G G+WI GIQ GA  QTILLSI+TS  N  K+  +    +
Sbjct: 422 PAAALLAFWLNLGGMGLWI-GIQTGAFTQTILLSIVTSCTNWEKQARMARERI 473

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108375|ref|XP_002314826.1| predicted protein [Populus trichocarpa] gi|222863866|gb|EEF00997.1| predicted protein [Populus trichocarpa]

 Score =  186 bits (473), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 107/219 (48%), Positives = 136/219 (62%), Gaps = 38/219 (17%)

Query: 19  GEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIP 78
           GEF  + +P++ +I L      ++ +  + +LSGLL NP+LETSVLSVCL T S L++IP
Sbjct: 255 GEFFRFAIPSAVMICL-----QWWAYEIVVLLSGLLSNPQLETSVLSVCLTTTSTLYSIP 309

Query: 79  DGLGTAASNRVSN--GAGNSETAHIAVRV------------------------------K 106
            G+G A S RVSN  GAG  + A IAV                                K
Sbjct: 310 YGIGAAVSTRVSNELGAGRPQAARIAVYTVMILAIIEVIIVSGTLFGTRDIFGYSFSNEK 369

Query: 107 EVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGF 166
           EVVD+ + M PLVCL VIL+ L+ VLSGVARGCGWQ  GAYV LAA YLCG+PVAA LG 
Sbjct: 370 EVVDYVSNMTPLVCLSVILDGLQVVLSGVARGCGWQHIGAYVNLAAFYLCGVPVAAILGL 429

Query: 167 WLKSRGPGIWIGGIQAGALLQTILLSIITSPFNHYKKVN 205
           WL+ +  G+WI GIQ GA+LQT+LL++ITS  N  K+ +
Sbjct: 430 WLRLKARGLWI-GIQVGAILQTVLLTLITSCTNWEKQAS 467

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101797|ref|XP_002312424.1| predicted protein [Populus trichocarpa] gi|222852244|gb|EEE89791.1| predicted protein [Populus trichocarpa]

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 108/231 (46%), Positives = 138/231 (59%), Gaps = 38/231 (16%)

Query: 19  GEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIP 78
           GEF  + +P++ +I L      ++ +  + +LSGLL NP+LETSVLSVCL TI  L++IP
Sbjct: 231 GEFFRFAIPSAMMICL-----QWWSYEIVILLSGLLSNPRLETSVLSVCLTTIGTLYSIP 285

Query: 79  DGLGTAASNRVSN--GAGNSETAHIAV------------------------------RVK 106
            GLG AAS RVSN  GAG  + A IA                                 +
Sbjct: 286 YGLGAAASTRVSNELGAGRPQAARIAAYSVMILAIIELFVVSGTLFATRHIFGYSFSNER 345

Query: 107 EVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGF 166
           EVVD+ + MAPLVCL VI++ L+ VLSGVARGCGWQ  GA V LAA YLCG+PVAA LG+
Sbjct: 346 EVVDYVSNMAPLVCLSVIIDGLQGVLSGVARGCGWQHIGASVNLAALYLCGVPVAAILGY 405

Query: 167 WLKSRGPGIWIGGIQAGALLQTILLSIITSPFNHYKKVNVLSHSVANATSD 217
           W + +  G+WI GIQAGA+LQT+LLS++TS  N  K+       V    S 
Sbjct: 406 WFQLKARGLWI-GIQAGAILQTVLLSLVTSCTNWEKQARQARERVFEERSS 455

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582921|ref|XP_002532232.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223528089|gb|EEF30163.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis]

 Score =  182 bits (463), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 108/238 (45%), Positives = 139/238 (58%), Gaps = 38/238 (15%)

Query: 13  QISEEAGEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATIS 72
           ++ +  GEF  + +P+  +I L      ++ + F+ +LSGLLPNP+LETSVLSVCL TI+
Sbjct: 254 ELFQGVGEFFRFAIPSVVMICL-----QWWSYEFVILLSGLLPNPQLETSVLSVCLTTIA 308

Query: 73  NLFTIPDGLGTAASNRVSN--GAGNSETAHIAV--------------------------- 103
            L+ IP GL  A S RVSN  GAGN   A  AV                           
Sbjct: 309 TLYAIPYGLSAAVSTRVSNELGAGNPRVAKNAVYSVMFITVAELILVSGTLFTTRHVFGY 368

Query: 104 ---RVKEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPV 160
                KEVVD  +TMAPLVCL VI++ L+ VLSGVARGCGWQ  GAYV L A YLCG+P 
Sbjct: 369 TFSNEKEVVDSVSTMAPLVCLSVIVDGLQGVLSGVARGCGWQHIGAYVNLGALYLCGVPA 428

Query: 161 AAALGFWLKSRGPGIWIGGIQAGALLQTILLSIITSPFNHYKKVNVLSHSVANATSDI 218
           AA LGFWL+ +G G+WI GI  GA+LQT+LL ++T   N  ++ N     +    S +
Sbjct: 429 AAILGFWLQLKGRGLWI-GICIGAILQTVLLYVVTCHTNWKEQANKARKRIFEGRSSV 485

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737740|emb|CBI26941.3| unnamed protein product [Vitis vinifera]

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 114/224 (50%), Positives = 145/224 (64%), Gaps = 39/224 (17%)

Query: 13  QISEEAGEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATIS 72
           ++ +  GEF  + +P++ +I L     +++    L +LSGLLPNP+LETSVLSVCL TIS
Sbjct: 207 EVFQGMGEFFRFAIPSAVMICL-----EWWSFELLILLSGLLPNPELETSVLSVCLNTIS 261

Query: 73  NLFTIPDGLGTAASNRVSN--GAGNSETAHIAV----------------------RV--- 105
            L+TIP GLG A S RVSN  GAGN + A +AV                      RV   
Sbjct: 262 TLYTIPYGLGAAGSTRVSNELGAGNPQKARLAVYALMFLAVTETALVSTTLFASRRVFGY 321

Query: 106 -----KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPV 160
                KEVVD+ T M+PLVCL VIL+S++ VLSGVARGCGWQ  GA++ L A YLCGIPV
Sbjct: 322 LFSNEKEVVDYVTNMSPLVCLSVILDSMQGVLSGVARGCGWQHIGAFINLGAFYLCGIPV 381

Query: 161 AAALGFWLKSRGPGIWIGGIQAGALLQTILLSIITSPFNHYKKV 204
           AA L FWL+ RG G+WI GIQ GALLQT LL ++T  F +++K+
Sbjct: 382 AATLAFWLQLRGRGLWI-GIQTGALLQTTLLCVMTG-FTNWEKL 423

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147787625|emb|CAN78227.1| hypothetical protein VITISV_022104 [Vitis vinifera]

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/224 (50%), Positives = 145/224 (64%), Gaps = 39/224 (17%)

Query: 13  QISEEAGEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATIS 72
           ++ +  GEF  + +P++ +I L     +++    L +LSGLLPNP+LETSVLSVCL TIS
Sbjct: 245 EVFQGMGEFFRFAIPSAVMICL-----EWWSFELLILLSGLLPNPELETSVLSVCLNTIS 299

Query: 73  NLFTIPDGLGTAASNRVSN--GAGNSETAHIAV----------------------RV--- 105
            L+TIP GLG A S RVSN  GAGN + A +AV                      RV   
Sbjct: 300 TLYTIPYGLGAAGSTRVSNELGAGNPQKARLAVYALMFLAVTETALVSTTXFASRRVFGY 359

Query: 106 -----KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPV 160
                KEVVD+ T M+PLVCL VIL+S++ VLSGVARGCGWQ  GA++ L A YLCGIPV
Sbjct: 360 LFSNEKEVVDYVTNMSPLVCLSVILDSMQGVLSGVARGCGWQHIGAFINLGAFYLCGIPV 419

Query: 161 AAALGFWLKSRGPGIWIGGIQAGALLQTILLSIITSPFNHYKKV 204
           AA L FWL+ RG G+WI GIQ GALLQT LL ++T  F +++K+
Sbjct: 420 AATLAFWLQLRGRGLWI-GIQTGALLQTTLLCVMTG-FTNWEKL 461

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424132|ref|XP_002280212.1| PREDICTED: MATE efflux family protein 5 [Vitis vinifera]

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/224 (50%), Positives = 145/224 (64%), Gaps = 39/224 (17%)

Query: 13  QISEEAGEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATIS 72
           ++ +  GEF  + +P++ +I L     +++    L +LSGLLPNP+LETSVLSVCL TIS
Sbjct: 245 EVFQGMGEFFRFAIPSAVMICL-----EWWSFELLILLSGLLPNPELETSVLSVCLNTIS 299

Query: 73  NLFTIPDGLGTAASNRVSN--GAGNSETAHIAV----------------------RV--- 105
            L+TIP GLG A S RVSN  GAGN + A +AV                      RV   
Sbjct: 300 TLYTIPYGLGAAGSTRVSNELGAGNPQKARLAVYALMFLAVTETALVSTTLFASRRVFGY 359

Query: 106 -----KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPV 160
                KEVVD+ T M+PLVCL VIL+S++ VLSGVARGCGWQ  GA++ L A YLCGIPV
Sbjct: 360 LFSNEKEVVDYVTNMSPLVCLSVILDSMQGVLSGVARGCGWQHIGAFINLGAFYLCGIPV 419

Query: 161 AAALGFWLKSRGPGIWIGGIQAGALLQTILLSIITSPFNHYKKV 204
           AA L FWL+ RG G+WI GIQ GALLQT LL ++T  F +++K+
Sbjct: 420 AATLAFWLQLRGRGLWI-GIQTGALLQTTLLCVMTG-FTNWEKL 461

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582915|ref|XP_002532229.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223528086|gb|EEF30160.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis]

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 102/177 (57%), Positives = 114/177 (64%), Gaps = 33/177 (18%)

Query: 55  PNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GAGNSETAHIAV--------- 103
           PNP+LETSVLSVCL TIS L++IP G G A S RVSN  GAG  + A IAV         
Sbjct: 285 PNPQLETSVLSVCLQTISTLYSIPYGFGAAVSTRVSNELGAGKPQAARIAVFAVLFLAVV 344

Query: 104 ---------------------RVKEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQ 142
                                  KEVVD+ TTM+PLV L VI++SL+ VLSGVARGCGWQ
Sbjct: 345 ETAIVSSALFACRHVFGYLFSNEKEVVDYVTTMSPLVALSVIMDSLQGVLSGVARGCGWQ 404

Query: 143 DFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALLQTILLSIITSPFN 199
             GAYV L A YLCGIPVAA LGFWLK RG G+WI GIQ GA  QT+LLSI+TS  N
Sbjct: 405 HIGAYVNLGAFYLCGIPVAAVLGFWLKLRGMGLWI-GIQVGAFTQTVLLSIVTSRVN 460

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582919|ref|XP_002532231.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223528088|gb|EEF30162.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis]

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/217 (47%), Positives = 132/217 (60%), Gaps = 38/217 (17%)

Query: 19  GEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIP 78
           GEF    +P++ +        +++    + +LSGLLPNP+LETSVLS+C+ TIS ++ I 
Sbjct: 257 GEFFRLAIPSAVM-----SCLEWWSFELVVLLSGLLPNPRLETSVLSICITTISTIYCIA 311

Query: 79  DGLGTAASNRVSN--GAGNSETAHIAVRV------------------------------K 106
            GLG AAS RVSN  GAGN + A IAV                                K
Sbjct: 312 YGLGAAASTRVSNELGAGNPQAARIAVYAVLFLGIVESTLVSGTLFASRHVFGYAFSNSK 371

Query: 107 EVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGF 166
           EVVD+ TT++PL+ L VI++ L+ VLSGVARGCGWQ  GAYV L A Y+CGIPVA  LGF
Sbjct: 372 EVVDYVTTISPLISLSVIMDCLQGVLSGVARGCGWQHVGAYVNLVAFYICGIPVAVLLGF 431

Query: 167 WLKSRGPGIWIGGIQAGALLQTILLSIITSPFNHYKK 203
           WLK RG G+WI GIQ G ++Q +LL+I+T   N  K+
Sbjct: 432 WLKFRGIGLWI-GIQVGEVIQVVLLAIVTGCINWEKQ 467

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
TAIR|locus:2037858	481	AT1G15170 "AT1G15170" [Arabido	0.407	0.187	0.538	4.6e-41
TAIR|locus:2037868	482	AT1G15180 "AT1G15180" [Arabido	0.407	0.186	0.538	1.2e-38
TAIR|locus:2050230	483	AT2G04100 "AT2G04100" [Arabido	0.330	0.151	0.493	1.8e-37
TAIR|locus:2037723	487	AT1G15150 "AT1G15150" [Arabido	0.411	0.186	0.510	2.5e-37
TAIR|locus:2037848	487	AT1G15160 "AT1G15160" [Arabido	0.411	0.186	0.510	2.7e-37
TAIR|locus:2050190	476	DTX1 "AT2G04040" [Arabidopsis	0.330	0.153	0.452	9e-33
TAIR|locus:2156737	486	AT5G52450 "AT5G52450" [Arabido	0.343	0.156	0.486	1.1e-29
TAIR|locus:2050185	476	AT2G04080 "AT2G04080" [Arabido	0.352	0.163	0.481	1.2e-29
TAIR|locus:2050180	476	AT2G04050 "AT2G04050" [Arabido	0.357	0.165	0.455	2.3e-27
TAIR|locus:2010926	502	AT1G64820 [Arabidopsis thalian	0.330	0.145	0.493	3.1e-27

TAIR|locus:2037858 AT1G15170 "AT1G15170" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 4.6e-41, Sum P(2) = 4.6e-41
 Identities = 49/91 (53%), Positives = 65/91 (71%)

Query:    94 GNSETAHIAVRVKEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAAS 153
             G +   HI    KE +D+   MAPLV + ++L++L+ VLSG+ARGCGWQ  GAY+ L A 
Sbjct:   359 GRNLFGHIFSSDKETIDYVAKMAPLVSISLMLDALQGVLSGIARGCGWQHIGAYINLGAF 418

Query:   154 YLCGIPVAAALGFWLKSRGPGIWIGGIQAGA 184
             YL GIP+AA+L FW+  +G G+WIG IQAGA
Sbjct:   419 YLWGIPIAASLAFWIHLKGVGLWIG-IQAGA 448

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2037868 AT1G15180 "AT1G15180" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 1.2e-38, Sum P(2) = 1.2e-38
 Identities = 49/91 (53%), Positives = 64/91 (70%)

Query:    94 GNSETAHIAVRVKEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAAS 153
             G +   H+    KE +D+   MAPLV + +IL+ L+ VLSG+ARGCGWQ  GAY+ L A 
Sbjct:   360 GRNVFGHVFSSDKETIDYVAKMAPLVSISLILDGLQGVLSGIARGCGWQHIGAYINLGAF 419

Query:   154 YLCGIPVAAALGFWLKSRGPGIWIGGIQAGA 184
             YL GIP+AA+L FW+  +G G+WIG IQAGA
Sbjct:   420 YLWGIPIAASLAFWIHLKGVGLWIG-IQAGA 449

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2050230 AT2G04100 "AT2G04100" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 1.8e-37, Sum P(3) = 1.8e-37
 Identities = 36/73 (49%), Positives = 47/73 (64%)

Query:   106 KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALG 165
             KEVVD+ T ++PL+C+  +++    VL GVARG GWQ  GA+  + A YL G PV   LG
Sbjct:   367 KEVVDYVTELSPLLCISFLVDGFSAVLGGVARGSGWQHIGAWANVVAYYLLGAPVGLFLG 426

Query:   166 FWLKSRGPGIWIG 178
             FW    G G+WIG
Sbjct:   427 FWCHMNGKGLWIG 439

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2037723 AT1G15150 "AT1G15150" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 2.5e-37, Sum P(2) = 2.5e-37
 Identities = 47/92 (51%), Positives = 62/92 (67%)

Query:    93 AGNSETAHIAVRVKEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAA 152
             AG     H+    K+ +++   MAPLV + +IL+SL+ VLSGVA GCGWQ  GAY+   A
Sbjct:   355 AGRHVFGHVFSSDKKTIEYVAKMAPLVSISIILDSLQGVLSGVASGCGWQHIGAYINFGA 414

Query:   153 SYLCGIPVAAALGFWLKSRGPGIWIGGIQAGA 184
              YL GIP+AA+L FW+  +G G+WIG I AGA
Sbjct:   415 FYLWGIPIAASLAFWVHLKGVGLWIG-ILAGA 445

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2037848 AT1G15160 "AT1G15160" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 2.7e-37, Sum P(2) = 2.7e-37
 Identities = 47/92 (51%), Positives = 61/92 (66%)

Query:    93 AGNSETAHIAVRVKEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAA 152
             AG +    +    K  +D+   MAPLV + +IL+SL+ VLSGVA GCGWQ  GAY+   A
Sbjct:   355 AGKNLLGQVFSSDKNTIDYVAKMAPLVSISLILDSLQGVLSGVASGCGWQHIGAYINFGA 414

Query:   153 SYLCGIPVAAALGFWLKSRGPGIWIGGIQAGA 184
              YL GIP+AA+L FW+  +G G+WIG I AGA
Sbjct:   415 FYLWGIPIAASLAFWVHLKGVGLWIG-IIAGA 445

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2050190 DTX1 "AT2G04040" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 9.0e-33, Sum P(3) = 9.0e-33
 Identities = 33/73 (45%), Positives = 43/73 (58%)

Query:   106 KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALG 165
             KEV+D+   + PL+CL  IL+    VL+GVARG GWQ  GA+    + YL G PV   L 
Sbjct:   364 KEVLDYVADLTPLLCLSFILDGFTAVLNGVARGSGWQHIGAWNNTVSYYLVGAPVGIYLA 423

Query:   166 FWLKSRGPGIWIG 178
             F  +  G G+W G
Sbjct:   424 FSRELNGKGLWCG 436

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA;IDA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015691 "cadmium ion transport" evidence=IDA

GO:0051238 "sequestering of metal ion" evidence=IDA

TAIR|locus:2156737 AT5G52450 "AT5G52450" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
 Identities = 37/76 (48%), Positives = 48/76 (63%)

Query:   107 EVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGF 166
             EVV +  +M P++ L   L+SL+CVLSGVARGCGWQ  GA + L + YL G+P    L F
Sbjct:   364 EVVSYVASMMPILALGNFLDSLQCVLSGVARGCGWQKIGAIINLGSYYLVGVPSGLLLAF 423

Query:   167 WLKSRGPGIWIGGIQA 182
                  G G+W+G I A
Sbjct:   424 HFHVGGRGLWLGIICA 439

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2050185 AT2G04080 "AT2G04080" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
 Identities = 38/79 (48%), Positives = 50/79 (63%)

Query:   106 KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALG 165
             KEVVD+   ++PL+CL  IL+ L  VL+GVARGCGWQ  GA + + A YL G PV   L 
Sbjct:   364 KEVVDYVADISPLLCLSFILDGLTAVLNGVARGCGWQHIGALINVVAYYLVGAPVGVYLA 423

Query:   166 FWLKSRGPGIWIGGIQAGA 184
             F  +  G G+W G +  G+
Sbjct:   424 FSREWNGKGLWCG-VMVGS 441

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2050180 AT2G04050 "AT2G04050" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 2.3e-27, Sum P(2) = 2.3e-27
 Identities = 36/79 (45%), Positives = 45/79 (56%)

Query:   106 KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALG 165
             KEVVD+   + PL+CL  IL+    VL+GVARG GWQ  GA   + A YL G PV   L 
Sbjct:   364 KEVVDYVANLTPLLCLSFILDGFTAVLNGVARGSGWQHIGALNNVVAYYLVGAPVGVYLA 423

Query:   166 FWLKSRGPGIWIGGIQAGA 184
             F  +  G G+W G +   A
Sbjct:   424 FNRELNGKGLWCGVVVGSA 442

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0042991 "transcription factor import into nucleus" evidence=RCA

TAIR|locus:2010926 AT1G64820 [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 3.1e-27, Sum P(2) = 3.1e-27
 Identities = 36/73 (49%), Positives = 47/73 (64%)

Query:   106 KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALG 165
             +EVV + T + P++CL + + S   VLSGVARG GWQ  G Y  L + YL GIP+   L 
Sbjct:   366 REVVRYATQITPILCLSIFVNSFLAVLSGVARGSGWQRIGGYASLGSYYLVGIPLGWFLC 425

Query:   166 FWLKSRGPGIWIG 178
             F +K RG G+WIG
Sbjct:   426 FVMKLRGKGLWIG 438

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA;ISS

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.X.6692.1	hypothetical protein (455 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_IX1583	hypothetical protein (460 aa)			•						0.425

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	221
cd13132	436	cd13132, MATE_eukaryotic, Eukaryotic members of th	4e-38
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	4e-04
pfam01554	161	pfam01554, MatE, MatE	7e-04

>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

 Score =  136 bits (345), Expect = 4e-38
 Identities = 68/186 (36%), Positives = 92/186 (49%), Gaps = 34/186 (18%)

Query: 46  FLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GAGNSETAHIAV 103
            L +L+GLLP   +  +  S+CL T S L+ IP G+  AAS RV N  GAGN + A +A 
Sbjct: 246 ILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKRAKLAA 304

Query: 104 RV------------------------------KEVVDHGTTMAPLVCLLVILESLKCVLS 133
            V                              +EV+     + P++ L  I + L+ VLS
Sbjct: 305 IVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGLQAVLS 364

Query: 134 GVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALLQTILLSI 193
           GV RGCG Q  GAYV L A YL G+PV   L F L     G+WI G+ AG +LQ ++L +
Sbjct: 365 GVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWI-GLIAGLILQAVILLL 423

Query: 194 ITSPFN 199
           I    +
Sbjct: 424 IILRTD 429

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 35/149 (23%), Positives = 55/149 (36%), Gaps = 33/149 (22%)

Query: 62  SVLSVCLATISNLFTIPDGLGTAASNRVSN--GAGNSETAHIAVRV-------------- 105
           +   + L   S +F  P G+  A +  V    GAGN + A  A R+              
Sbjct: 277 AAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIAL 336

Query: 106 ----------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVY 149
                            EV+     +  +  L    + ++ VLSGV RG G       + 
Sbjct: 337 LLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIIS 396

Query: 150 LAASYLCGIPVAAALGFWLKSRGPGIWIG 178
           L + +   +P+A  LGF+      G+WIG
Sbjct: 397 LLSYWGFRLPLAYLLGFFFLG-LAGVWIG 424

Length = 455

>gnl|CDD|190033 pfam01554, MatE, MatE

 Score = 38.3 bits (90), Expect = 7e-04
 Identities = 36/148 (24%), Positives = 57/148 (38%), Gaps = 35/148 (23%)

Query: 46  FLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GAGNSETAHIAV 103
             T+  G L    +  + +S+  +  S +F    GL TA +  V    GAGN + A +A+
Sbjct: 15  IDTLFVGHLG--AVALAAVSIANSIASLIFMFLLGLSTALTTLVGQALGAGNFKRAGVAL 72

Query: 104 RV------------------------------KEVVDHGTTMAPLVCLLVILESLKCVLS 133
           R                               +EV++  +    ++ L +   SL+ VLS
Sbjct: 73  RQGLILSLLISLPIALLIILFREPILSLFTQDEEVLELASKYLRILALGIPFLSLQFVLS 132

Query: 134 GVARGCGWQDFGAYVYLAASYLCGIPVA 161
           G  RG G      Y+ L  S L  IP+ 
Sbjct: 133 GFLRGAGDTKPPLYINL-ISLLLNIPLN 159

The MatE domain. Length = 161

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	221
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.97
PRK10189	478	MATE family multidrug exporter; Provisional	99.96
PRK00187	464	multidrug efflux protein NorA; Provisional	99.96
PRK01766	456	multidrug efflux protein; Reviewed	99.95
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.94
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.91
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.91
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.87
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.86
PRK00187	464	multidrug efflux protein NorA; Provisional	99.85
PRK10189	478	MATE family multidrug exporter; Provisional	99.84
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.83
PRK01766	456	multidrug efflux protein; Reviewed	99.81
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.64
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.64
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	99.6
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.24
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.17
PRK15099	416	O-antigen translocase; Provisional	98.89
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	98.88
KOG1347	473	consensus Uncharacterized membrane protein, predic	98.84
TIGR01695	502	mviN integral membrane protein MviN. This model re	98.82
PRK15099	416	O-antigen translocase; Provisional	98.64
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	98.53
COG0728	518	MviN Uncharacterized membrane protein, putative vi	98.41
PRK10459	492	colanic acid exporter; Provisional	98.25
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	98.04
COG2244	480	RfbX Membrane protein involved in the export of O-	97.94
PF14667	146	Polysacc_synt_C: Polysaccharide biosynthesis C-ter	97.68
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	96.58
PF07260	345	ANKH: Progressive ankylosis protein (ANKH); InterP	96.28
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	95.96
COG0728	518	MviN Uncharacterized membrane protein, putative vi	95.47
PRK10459	492	colanic acid exporter; Provisional	94.66
COG2244	480	RfbX Membrane protein involved in the export of O-	90.53
PF04506	549	Rft-1: Rft protein; InterPro: IPR007594 Asymmetric	80.5

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.97  E-value=5.4e-29  Score=223.52  Aligned_cols=161  Identities=27%  Similarity=0.397  Sum_probs=153.5

Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--CCCCHHHHHHHHhH----------------
Q 038536           44 HNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GAGNSETAHIAVRV----------------  105 (221)
Q Consensus        44 ~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga~~~~~a~~~~~~----------------  105 (221)
                      +...+.+.+++|  ++++|||+++.++.++.++++.|+++|+++++||  ||||+||+|+..+.                
T Consensus       261 ~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~  338 (455)
T COG0534         261 FLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLL  338 (455)
T ss_pred             HHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677888999999  6789999999999999999999999999999999  99999999999988                


Q ss_pred             --------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHhhcCc
Q 038536          106 --------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSR  171 (221)
Q Consensus       106 --------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g  171 (221)
                                    +|+.+.+.+++++..+.+++++.+.+..|.+||.||+|.+++++++++|++++|++|++.+.. +|
T Consensus       339 ~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~-~g  417 (455)
T COG0534         339 LLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFF-LG  417 (455)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHHHhhhc-cc
Confidence                          999999999999999999999999999999999999999999999999999999999999866 99


Q ss_pred             cchhhhhhHHhHHHHHHHHHHHHHhhcChHHHHHHHH
Q 038536          172 GPGIWIGGIQAGALLQTILLSIITSPFNHYKKVNVLS  208 (221)
Q Consensus       172 ~~Giw~~~~~~~~~~~~i~~~~~~~~~~w~~~~~~~~  208 (221)
                      ..|+|++ +.+++.++++++.+++++.+|+++..+.+
T Consensus       418 ~~Gvw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (455)
T COG0534         418 LAGVWIG-FPLSLILRAILLLLRLRRGRWRRKAVAAA  453 (455)
T ss_pred             chHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Confidence            9999999 99999999999999999999998876543

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.96  E-value=2.1e-28  Score=221.02  Aligned_cols=155  Identities=15%  Similarity=0.164  Sum_probs=147.5

Q ss_pred             HHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--CCCCHHHHHHHHhH------------------
Q 038536           46 FLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GAGNSETAHIAVRV------------------  105 (221)
Q Consensus        46 ~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga~~~~~a~~~~~~------------------  105 (221)
                      +.+.+++++|  +.++|||+++.+++.+.+++..|+++|+++++||  ||||+||+|+..+.                  
T Consensus       281 ~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  358 (478)
T PRK10189        281 LTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAP  358 (478)
T ss_pred             HHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455678899  6799999999999999999999999999999999  99999999999887                  


Q ss_pred             ------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHhhcCccc
Q 038536          106 ------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGP  173 (221)
Q Consensus       106 ------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~  173 (221)
                                  +|+++.+..++++.+..+++++.+++..+++||.||++.+++++++++|++++|++|++.+.+++|+.
T Consensus       359 ~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~  438 (478)
T PRK10189        359 FAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVV  438 (478)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence                        89999999999999999999999999999999999999999999999999999999999988899999


Q ss_pred             hhhhhhHHhHHHHHHHHHHHHHhhcChHHH
Q 038536          174 GIWIGGIQAGALLQTILLSIITSPFNHYKK  203 (221)
Q Consensus       174 Giw~~~~~~~~~~~~i~~~~~~~~~~w~~~  203 (221)
                      |+|++ ..+++.++++++++++++.+|+|+
T Consensus       439 Gvw~~-~~~~~~~~~~~~~~r~~~~~W~~~  467 (478)
T PRK10189        439 GVWMG-MFLDWAVRGVLFYWRMVSGRWLWK  467 (478)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHcCccccC
Confidence            99999 999999999999999999999983

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.96  E-value=1.1e-27  Score=215.67  Aligned_cols=164  Identities=23%  Similarity=0.336  Sum_probs=147.2

Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--CCCCHHHHHHHHhH----------------
Q 038536           44 HNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GAGNSETAHIAVRV----------------  105 (221)
Q Consensus        44 ~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga~~~~~a~~~~~~----------------  105 (221)
                      +.+++.+++++|  +.++||++++.++..+.++++.|++.|+++++||  |+||+||+|+..+.                
T Consensus       256 ~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~  333 (464)
T PRK00187        256 FTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFGAVVMLLFAGLF  333 (464)
T ss_pred             HHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566788899999  5799999999999999999999999999999999  99999999999987                


Q ss_pred             ----------------H---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHH
Q 038536          106 ----------------K---EVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGF  166 (221)
Q Consensus       106 ----------------~---~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~  166 (221)
                                      +   |+.+.+..++++.+.+.++++++.++.+++||.||+|.+++++++++|++++|++|++.+
T Consensus       334 ~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~~~ipl~~ll~~  413 (464)
T PRK00187        334 WLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWLVGAPLAWLLAF  413 (464)
T ss_pred             HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                            1   678888999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCccchhhhhhHHhHHHHHHHHHHHHHhhcChHHHHHHHHHHhhh
Q 038536          167 WLKSRGPGIWIGGIQAGALLQTILLSIITSPFNHYKKVNVLSHSVAN  213 (221)
Q Consensus       167 ~~~~g~~Giw~~~~~~~~~~~~i~~~~~~~~~~w~~~~~~~~~r~~~  213 (221)
                      .+++|+.|+|++ +.+++.+.++++..++   +|+|...+.+++.+|
T Consensus       414 ~~~~g~~Gvw~~-~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  456 (464)
T PRK00187        414 TLGWGAVGVWWG-LALGLACAAVALTLAF---EWKTARLLRKARASE  456 (464)
T ss_pred             ccCCCceeeHHH-HHHHHHHHHHHHHHHH---HHHHHHhhhhhhHHH
Confidence            889999999999 9999999998887776   444444444444444

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.95  E-value=2.5e-25  Score=199.54  Aligned_cols=156  Identities=23%  Similarity=0.314  Sum_probs=146.7

Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--CCCCHHHHHHHHhH----------------
Q 038536           44 HNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GAGNSETAHIAVRV----------------  105 (221)
Q Consensus        44 ~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga~~~~~a~~~~~~----------------  105 (221)
                      +.+...+++++|  +.++|+++++.++.++.++++.|++.+.++++||  |+||++++|+..+.                
T Consensus       259 ~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (456)
T PRK01766        259 FAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLAVGLGMALLTAIFL  336 (456)
T ss_pred             HHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455677889999  5789999999999999999999999999999999  99999999999887                


Q ss_pred             --------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHhhcCc
Q 038536          106 --------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSR  171 (221)
Q Consensus       106 --------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g  171 (221)
                                    ||+.+.+..++++..+..++++++.+.++++||.||++.++++++++.|++++|+.|++.+..++|
T Consensus       337 ~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G  416 (456)
T PRK01766        337 VLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLPLGYILALTDPMG  416 (456)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence                          889999999999999999999999999999999999999999999999999999999999888899


Q ss_pred             cchhhhhhHHhHHHHHHHHHHHHHhhcChHH
Q 038536          172 GPGIWIGGIQAGALLQTILLSIITSPFNHYK  202 (221)
Q Consensus       172 ~~Giw~~~~~~~~~~~~i~~~~~~~~~~w~~  202 (221)
                      +.|+|++ +.+++.+.++++++++++.+|+.
T Consensus       417 ~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~  446 (456)
T PRK01766        417 PFGFWIG-LIIGLTAAAILLLLRLRKLQRQP  446 (456)
T ss_pred             ceehHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999 99999999999999998887664

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.94  E-value=7.9e-27  Score=209.53  Aligned_cols=213  Identities=38%  Similarity=0.641  Sum_probs=202.1

Q ss_pred             ChhhhhhcCCChHHHHHHHHHHHHHHhHHhHH------------------------------------------------
Q 038536            1 MGKILIFMGQYPQISEEAGEFSMWLVPASSVI------------------------------------------------   32 (221)
Q Consensus         1 ~~~il~~~g~~~~~~~~a~~y~~~~~p~l~~~------------------------------------------------   32 (221)
                      +++||..+||||++++.|+.|.++.+|+++.+                                                
T Consensus       129 ~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~~~~~~lhi~~~~llv~~~~~g~~Ga  208 (473)
T KOG1347|consen  129 SEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIGLVALVLHILLTWLLVSKLGLGIKGA  208 (473)
T ss_pred             cHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHhhhcccCCCccc
Confidence            47999999999999999999999999999988                                                


Q ss_pred             ---------------------------------HHhhhhHHHHH---------------HHHHHHHHhcCCCchhHHHHH
Q 038536           33 ---------------------------------QLFNHLFDYFK---------------HNFLTILSGLLPNPKLETSVL   64 (221)
Q Consensus        33 ---------------------------------~~~~~~~~~l~---------------~~~~~~~~~~lg~~~~~~Aa~   64 (221)
                                                       . +++|++++|               ++++.+..|.++++..++++.
T Consensus       209 ala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~  287 (473)
T KOG1347|consen  209 ALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQ  287 (473)
T ss_pred             hHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence                                             3 888999999               888999999999877899999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHcc--CCCCHHHHHHHHhH------------------------------HHHHHHH
Q 038536           65 SVCLATISNLFTIPDGLGTAASNRVSN--GAGNSETAHIAVRV------------------------------KEVVDHG  112 (221)
Q Consensus        65 ~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga~~~~~a~~~~~~------------------------------~~v~~~~  112 (221)
                      +++.++....++.+.|++.|++++++|  |+||+++||...+.                              +|+.+..
T Consensus       288 sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~v  367 (473)
T KOG1347|consen  288 SICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLV  367 (473)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            999999999999999999999999999  99999999988776                              8999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHhhcCccchhhhhhHHhHHHHHHHHHH
Q 038536          113 TTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALLQTILLS  192 (221)
Q Consensus       113 ~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw~~~~~~~~~~~~i~~~  192 (221)
                      .+..++.+...+.++.+.+.+|+.||.|+++...++++.+++++++|++.++++..++|..|+|+| +..+..+......
T Consensus       368 a~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G-~~~~~~~~~~~l~  446 (473)
T KOG1347|consen  368 ADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFFTKFGVKGLWIG-ILLGFSVQTLVLA  446 (473)
T ss_pred             HHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEEEecCceEEEee-hHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999 9999888888888


Q ss_pred             HHHhhcChHHHHHHHHHHhhhhh
Q 038536          193 IITSPFNHYKKVNVLSHSVANAT  215 (221)
Q Consensus       193 ~~~~~~~w~~~~~~~~~r~~~~~  215 (221)
                      ....++||+++.+++++|..+..
T Consensus       447 ~~~~~tdW~~~~~~a~~~~~~~~  469 (473)
T KOG1347|consen  447 IVTARTDWKNQAEKAFARIIASL  469 (473)
T ss_pred             HheeeccHHHHHHHHHHHHHhhc
Confidence            88899999999999999988543

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.91  E-value=1.2e-22  Score=182.45  Aligned_cols=195  Identities=11%  Similarity=0.099  Sum_probs=166.4

Q ss_pred             ChhhhhhcCCChHHHHHHHHHHHHHHhHHhHH------------------------------------------------
Q 038536            1 MGKILIFMGQYPQISEEAGEFSMWLVPASSVI------------------------------------------------   32 (221)
Q Consensus         1 ~~~il~~~g~~~~~~~~a~~y~~~~~p~l~~~------------------------------------------------   32 (221)
                      +++++..++.|+|+.+.+.+|+++..++.++.                                                
T Consensus       114 ~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~li~~~~~Gi~Ga  193 (453)
T PRK09575        114 ADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGLMVIGALINIVLDYLFIGWLDWGLTGA  193 (453)
T ss_pred             HHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHHHhCCchhHHH
Confidence            37899999999999999999999999999986                                                


Q ss_pred             ------------------------------H----HhhhhHHHHH---------------HHHHHHHHhcCCCchhHHHH
Q 038536           33 ------------------------------Q----LFNHLFDYFK---------------HNFLTILSGLLPNPKLETSV   63 (221)
Q Consensus        33 ------------------------------~----~~~~~~~~l~---------------~~~~~~~~~~lg~~~~~~Aa   63 (221)
                                                    +    .++.+++.+|               +.+...+.+++|+ +.++|+
T Consensus       194 a~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~-~~~lAa  272 (453)
T PRK09575        194 AIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGS-ALTVGA  272 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCc-hHHHHH
Confidence                                          0    0112233344               3334455677784 357999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHcc--CCCCHHHHHHHHhH-------------------------------HHHHH
Q 038536           64 LSVCLATISNLFTIPDGLGTAASNRVSN--GAGNSETAHIAVRV-------------------------------KEVVD  110 (221)
Q Consensus        64 ~~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga~~~~~a~~~~~~-------------------------------~~v~~  110 (221)
                      ++++.++..+.+++..|++.++++++||  ||||+||+|+..+.                               ||+++
T Consensus       273 ~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~  352 (453)
T PRK09575        273 YAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIA  352 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHH
Confidence            9999999999999999999999999999  99999999999988                               57999


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHhhcCccchhhhhhHHhHHHHHHHH
Q 038536          111 HGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALLQTIL  190 (221)
Q Consensus       111 ~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw~~~~~~~~~~~~i~  190 (221)
                      .+.+++++..+.+++++++.+..+.+||.||++.+++.++.+. ++.+|..|++..  .+|+.|+|++ +.+++.+..++
T Consensus       353 ~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~v~ip~~~ll~~--~~G~~Gvw~a-~~~~~~~~~~~  428 (453)
T PRK09575        353 ETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGNM-LIQLPFLFILPK--WLGVDGVWLA-MPLSNIALSLV  428 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHhH-HHHHHHHHHHHH--HHCcchHhhH-HHHHHHHHHHH
Confidence            9999999999999999999999999999999999999997764 678999998864  3799999999 99999999998


Q ss_pred             HHHHHhhcChH
Q 038536          191 LSIITSPFNHY  201 (221)
Q Consensus       191 ~~~~~~~~~w~  201 (221)
                      ..+++++ +|+
T Consensus       429 ~~~~~~~-~~~  438 (453)
T PRK09575        429 VAPMLWR-DVK  438 (453)
T ss_pred             HHHHHHH-HHH
Confidence            8776654 344

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.91  E-value=3.1e-22  Score=179.23  Aligned_cols=148  Identities=15%  Similarity=0.111  Sum_probs=123.2

Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--CCCCHHHHHHHHhH----------------
Q 038536           44 HNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GAGNSETAHIAVRV----------------  105 (221)
Q Consensus        44 ~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga~~~~~a~~~~~~----------------  105 (221)
                      +.+.+.+++++|  +.++|||+++.++.++.++++.|+++|+++++||  |+||+||+|+..+.                
T Consensus       252 ~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~~~  329 (441)
T PRK10367        252 FGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVALLFSLVY  329 (441)
T ss_pred             HHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666788899999  5789999999999999999999999999999999  99999999999887                


Q ss_pred             --------------HHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHh
Q 038536          106 --------------KEVVDHGTTMAPLVCLLVILESLKCV----LSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFW  167 (221)
Q Consensus       106 --------------~~v~~~~~~~l~i~~~~~~~~~~~~v----~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~  167 (221)
                                    +|+++.+.+++++.+...+......+    +.|.+||. |+|.+++++++++|++.++.       
T Consensus       330 ~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~-dt~~~~~~~~~~~~~~~~~~-------  401 (441)
T PRK10367        330 ALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAA-EMRNSMAVAAAGFALTLLTL-------  401 (441)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchH-HHHHHHHHHHHHHHHHHHHH-------
Confidence                          89999999999998765433324443    55555655 69999999999998533322       


Q ss_pred             hcCccchhhhhhHHhHHHHHHHHHHHHHhhcChHHH
Q 038536          168 LKSRGPGIWIGGIQAGALLQTILLSIITSPFNHYKK  203 (221)
Q Consensus       168 ~~~g~~Giw~~~~~~~~~~~~i~~~~~~~~~~w~~~  203 (221)
                      .++|+.|+|++ ..+++.++++++.+++++. |+|.
T Consensus       402 ~~~g~~Gvw~a-~~~~~~~~~i~~~~~~~~~-~~~~  435 (441)
T PRK10367        402 PWLGNHGLWLA-LTVFLALRGLSLAAIWRRH-WRNG  435 (441)
T ss_pred             HHcCchHHHHH-HHHHHHHHHHHHHHHHHHH-Hhcc
Confidence            24799999999 9999999999988776555 8653

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.87  E-value=1.5e-20  Score=168.38  Aligned_cols=174  Identities=14%  Similarity=0.084  Sum_probs=156.6

Q ss_pred             HHHHHHHHHHHhHHhHHHHhhhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--CC
Q 038536           16 EEAGEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GA   93 (221)
Q Consensus        16 ~~a~~y~~~~~p~l~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga   93 (221)
                      +..++.++..+|.+..+ ..+.....    +++.+++++|. +.++||.+++.++..+.+.+..|++.++++++||  |+
T Consensus         6 ~~~k~il~la~P~~~~~-~~~~~~~~----vd~~~vg~l~g-~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga   79 (441)
T PRK10367          6 SSDKALWRLALPMIFSN-ITVPLLGL----VDTAVIGHLDS-PVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGA   79 (441)
T ss_pred             ccHHHHHHHHHHHHHHH-HHHHHHHH----HHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            34677889999998887 55555555    77899999953 5689999999999999999999999999999999  99


Q ss_pred             CCHHHHHHHHhH------------------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcch
Q 038536           94 GNSETAHIAVRV------------------------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQD  143 (221)
Q Consensus        94 ~~~~~a~~~~~~------------------------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~  143 (221)
                      ||+||+++..+.                              +|+.+.+.+|+++..++.++.....++++++||.||+|
T Consensus        80 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~  159 (441)
T PRK10367         80 KNPQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYAR  159 (441)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            999999999877                              89999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHhhcCccchhhhhhHHhHHHHHHHHHHHHHhh
Q 038536          144 FGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALLQTILLSIITSP  197 (221)
Q Consensus       144 ~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw~~~~~~~~~~~~i~~~~~~~~  197 (221)
                      .++++++++. ++++++.|++.+.+++|+.|+|++ +.+++.+..++..+++++
T Consensus       160 ~~~~~~ii~~-~vni~l~~~lI~~~~lGv~Gaa~A-t~is~~~~~i~~~~~~~~  211 (441)
T PRK10367        160 APVILLVVGN-ILNIVLDLWLVMGLHMNVQGAALA-TVIAEYATLLIGLLMVRK  211 (441)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHcCCccHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            9999999996 678999999998889999999999 999999998887766654

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.86  E-value=5.1e-20  Score=165.50  Aligned_cols=177  Identities=21%  Similarity=0.216  Sum_probs=162.4

Q ss_pred             HHHHHHHHHHHHhHHhHHHHhhhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--C
Q 038536           15 SEEAGEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--G   92 (221)
Q Consensus        15 ~~~a~~y~~~~~p~l~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~--G   92 (221)
                      ....+++.+..+|.+..+ ..+.+..+    +++.++|+++  ++++||.++++++..+.+.+..|++.|++++++|  |
T Consensus        13 ~~~~k~l~~la~P~i~~~-l~~~l~~~----vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~G   85 (455)
T COG0534          13 KKILKLLLKLAIPIILGN-LLQTLYGL----VDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIG   85 (455)
T ss_pred             hhHHHHHHHHHHHHHHHH-HHHHHHHH----HHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHc
Confidence            345788999999999997 55555555    7789999999  6899999999999999999999999999999999  9


Q ss_pred             CCCHHHHHHHHhH------------------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 038536           93 AGNSETAHIAVRV------------------------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQ  142 (221)
Q Consensus        93 a~~~~~a~~~~~~------------------------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~  142 (221)
                      +||++++|+..+.                              +|+.+.+.+|+++..++.++..+..++.+++|+.||+
T Consensus        86 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~  165 (455)
T COG0534          86 AGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDT  165 (455)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999887                              6799999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhHHHHHHHHHHh-hc-CccchhhhhhHHhHHHHHHHHHHHHHhhcCh
Q 038536          143 DFGAYVYLAASYLCGIPVAAALGFW-LK-SRGPGIWIGGIQAGALLQTILLSIITSPFNH  200 (221)
Q Consensus       143 ~~~~~~~~~~~~~i~ip~~~~~~~~-~~-~g~~Giw~~~~~~~~~~~~i~~~~~~~~~~w  200 (221)
                      |.++++++++. +.++.+.|++.+. ++ +|+.|.-++ +.+++.+..+++++++++.+.
T Consensus       166 ~~~m~~~~~~~-~lNivln~llI~g~~g~lGv~GAA~A-T~ia~~~~~~~~~~~~~~~~~  223 (455)
T COG0534         166 KTPMYILLLGN-LLNIVLNYLLIFGLFGGLGVAGAALA-TVIARWIGALLLLIYLLRKKR  223 (455)
T ss_pred             chhHHHHHHHH-HHHHHhhHHHHHhccccccchhHHHH-HHHHHHHHHHHHHHHHHhcch
Confidence            99999999998 5689999999887 56 999999999 999999999999988887764

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.85  E-value=2.5e-19  Score=161.40  Aligned_cols=172  Identities=17%  Similarity=0.010  Sum_probs=150.6

Q ss_pred             HHHHHHHHHhHHhHHHHhhhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--CCCC
Q 038536           18 AGEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GAGN   95 (221)
Q Consensus        18 a~~y~~~~~p~l~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga~~   95 (221)
                      .++.++..+|....+ ....+..    ..++.+++++|  +.++||++++.++..+.+++..|++.|+++++||  |+||
T Consensus         9 ~k~il~~a~P~~~~~-~~~~~~~----~~d~~~v~~lg--~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~   81 (464)
T PRK00187          9 LKAILRLAGPLIASQ-LAHMLMV----FTDTLMMGRLG--PEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGD   81 (464)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHH----HHHHHHHhccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            567778888887775 3333333    37789999999  6789999999999999999999999999999999  9999


Q ss_pred             HHHHHHHHhH-----------------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHH
Q 038536           96 SETAHIAVRV-----------------------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGA  146 (221)
Q Consensus        96 ~~~a~~~~~~-----------------------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~  146 (221)
                      +||+++..+.                             ||+.+.+.+|+++..++.++..+.+++++++||.||++.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~  161 (464)
T PRK00187         82 IEGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVM  161 (464)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            9999999876                             99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHHHHh----hcCccchhhhhhHHhHHHHHHHHHHHHHhhc
Q 038536          147 YVYLAASYLCGIPVAAALGFW----LKSRGPGIWIGGIQAGALLQTILLSIITSPF  198 (221)
Q Consensus       147 ~~~~~~~~~i~ip~~~~~~~~----~~~g~~Giw~~~~~~~~~~~~i~~~~~~~~~  198 (221)
                      ++++++.. +++|+.|++.+.    +++|+.|++++ +.+++....+++.++++++
T Consensus       162 ~~~~~~~~-~ni~~~~~lIfg~~g~p~~Gv~Gaala-t~i~~~~~~~~~~~~~~~~  215 (464)
T PRK00187        162 VISLAGAV-ANLLLNYALIEGWFGLPKLGLMGIGLV-TALVSNGMALALALYIRRH  215 (464)
T ss_pred             HHHHHHHH-HHHHHHHHHHcCCCCCccccccchHHH-HHHHHHHHHHHHHHHHHhc
Confidence            99999874 589999988764    25899999999 9999888888777666544

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.84  E-value=5.7e-19  Score=159.69  Aligned_cols=170  Identities=16%  Similarity=0.101  Sum_probs=148.3

Q ss_pred             HHHHHHHHHhHHhHHHHhhhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--CCCC
Q 038536           18 AGEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GAGN   95 (221)
Q Consensus        18 a~~y~~~~~p~l~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga~~   95 (221)
                      .++.++..+|....+ .......    .+++.+++++|  ++++||+++++++..+.+.+..|+++++++++||  |+||
T Consensus        28 ~k~il~la~P~~~~~-~~~~~~~----~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~  100 (478)
T PRK10189         28 WREITPLAVPIFIEN-LCVLLMG----VLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRD  100 (478)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHH----HHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            556677777777765 3333333    37789999999  6789999999999999999999999999999999  9999


Q ss_pred             HHHHHHHHhH--------------------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcch
Q 038536           96 SETAHIAVRV--------------------------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQD  143 (221)
Q Consensus        96 ~~~a~~~~~~--------------------------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~  143 (221)
                      +||+++..+.                                +|+.+.+.+|+++..++.++.++..++++++||.||++
T Consensus       101 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~  180 (478)
T PRK10189        101 RRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTK  180 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH
Confidence            9999999876                                68899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHh----hcCccchhhhhhHHhHHHHHHHHHHHHHh
Q 038536          144 FGAYVYLAASYLCGIPVAAALGFW----LKSRGPGIWIGGIQAGALLQTILLSIITS  196 (221)
Q Consensus       144 ~~~~~~~~~~~~i~ip~~~~~~~~----~~~g~~Giw~~~~~~~~~~~~i~~~~~~~  196 (221)
                      .++++++++. ++++++.+++.+.    +++|+.|+|++ +.+++.+..++..+++.
T Consensus       181 ~~~~i~~~~~-~~ni~l~~~li~g~~~~~~lGv~Gaa~A-t~is~~~~~~~~~~~~~  235 (478)
T PRK10189        181 IPLLINGGMN-ILNIIISSILIYGLFSWQGLGFVGAGLG-LTISRYIGAVAIIWVLM  235 (478)
T ss_pred             HhHHHHHHHH-HHHHHHhHHHHhcCCCCCccchHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            9999999865 6788898888764    37999999999 99999999888766554

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.83  E-value=2e-19  Score=161.47  Aligned_cols=173  Identities=15%  Similarity=0.116  Sum_probs=156.5

Q ss_pred             HHHHHHHHHHhHHhHHHHhhhhHHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--CC
Q 038536           17 EAGEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLL-PNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GA   93 (221)
Q Consensus        17 ~a~~y~~~~~p~l~~~~~~~~~~~~l~~~~~~~~~~~l-g~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga   93 (221)
                      ..+++++..+|.+..+ ....+...    .++.+++++ |  ++++|+++++.++..+...+..|++.++++++||  |+
T Consensus        10 ~~k~i~~l~~P~~~~~-l~~~l~~~----~d~~~lg~~~g--~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga   82 (453)
T PRK09575         10 IYRTFWRYTIPSIAAM-LVNGLYQI----VDGIFIGHYVG--AEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGE   82 (453)
T ss_pred             hHHHHHHHHHHHHHHH-HHHHHHHH----HHHHHhccccc--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            4678899999999887 55555555    778999996 7  5789999999999999999999999999999999  99


Q ss_pred             CCHHHHHHHHhH------------------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcch
Q 038536           94 GNSETAHIAVRV------------------------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQD  143 (221)
Q Consensus        94 ~~~~~a~~~~~~------------------------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~  143 (221)
                      ||+||+++..+.                              +|+.+.+.+|+++..++.++.++....++++|+.||++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~  162 (453)
T PRK09575         83 GDLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPN  162 (453)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence            999999999887                              88999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHhhcCccchhhhhhHHhHHHHHHHHHHHHHhhc
Q 038536          144 FGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALLQTILLSIITSPF  198 (221)
Q Consensus       144 ~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw~~~~~~~~~~~~i~~~~~~~~~  198 (221)
                      .++..++.+. ++++++.+++.+.+++|+.|+|++ +.+++.+..++.++++++.
T Consensus       163 ~~~~~~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~A-t~is~~~~~~~~~~~~~~~  215 (453)
T PRK09575        163 LATGLMVIGA-LINIVLDYLFIGWLDWGLTGAAIA-TALAQLVVTVLGLGYFFSS  215 (453)
T ss_pred             HHHHHHHHHH-HHHHHhhHHHHHhCCchhHHHHHH-HHHHHHHHHHHHHHHHHCC
Confidence            9999999886 778999999998889999999999 9999999999887777654

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.81  E-value=1.3e-17  Score=149.55  Aligned_cols=183  Identities=16%  Similarity=0.122  Sum_probs=159.7

Q ss_pred             CCChHHHHHHHHHHHHHHhHHhHHHHhhhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 038536            9 GQYPQISEEAGEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNR   88 (221)
Q Consensus         9 g~~~~~~~~a~~y~~~~~p~l~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~   88 (221)
                      ...++..+..++.++..+|..+.+ ....+...    +++.+++++|  +.++|+++++.++..+.+.+..|++.+.+++
T Consensus         2 ~~~~~~~~~~~~il~~~~P~~~~~-~~~~~~~~----~d~~~i~~~g--~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~   74 (456)
T PRK01766          2 KETQKYKSEARQLLALALPILLAQ-VAQTAMGF----VDTVMAGGVS--ATDLAAVAIGTSIWLPVILFGHGLLLALTPI   74 (456)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHH-HHHHHHHH----HHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677778899999999999886 44444444    6778999999  5789999999999999999999999999999


Q ss_pred             Hcc--CCCCHHHHHHHHhH------------------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 038536           89 VSN--GAGNSETAHIAVRV------------------------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVA  136 (221)
Q Consensus        89 ig~--Ga~~~~~a~~~~~~------------------------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gil  136 (221)
                      +||  |+||+|++++..+.                              +|+.+.+.+|+.+..++.++..+..++++++
T Consensus        75 vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l  154 (456)
T PRK01766         75 VAQLNGAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFI  154 (456)
T ss_pred             HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999  99999999999876                              7888899999999999999999999999999


Q ss_pred             hhcCcchhHHHHHHHHHHHhHHHHHHHHHHh----hcCccchhhhhhHHhHHHHHHHHHHHHHhhcCh
Q 038536          137 RGCGWQDFGAYVYLAASYLCGIPVAAALGFW----LKSRGPGIWIGGIQAGALLQTILLSIITSPFNH  200 (221)
Q Consensus       137 rg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~----~~~g~~Giw~~~~~~~~~~~~i~~~~~~~~~~w  200 (221)
                      ||.||++.+++.++++. ++++++.+++.+.    +++|+.|+|++ +.+++++..++..+++++.+.
T Consensus       155 ~~~g~~~~~~~~~~i~~-ivni~l~~~li~~~~~~~~~Gv~Gaa~a-t~is~~~~~~~~~~~~~~~~~  220 (456)
T PRK01766        155 DGLGKTKPTMVIGFLGL-LINIPLNYIFIYGKFGFPELGGVGCGVA-TAIVYWVMFLAMLIYIKRARR  220 (456)
T ss_pred             HHcCCChHHHHHHHHHH-HHHHHHHHHHHcCCCCCcccccccHHHH-HHHHHHHHHHHHHHHHHhChh
Confidence            99999999999999987 6789998888753    36899999999 999999999988877765543

>TIGR01695 mviN integral membrane protein MviN

Probab=99.64  E-value=4.9e-14  Score=127.50  Aligned_cols=149  Identities=17%  Similarity=0.033  Sum_probs=126.3

Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHcc--CCCCHHHHHHHHhH---------------
Q 038536           44 HNFLTILSGLLPNPKLETSVLSVCLATISNLFT-IPDGLGTAASNRVSN--GAGNSETAHIAVRV---------------  105 (221)
Q Consensus        44 ~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~-~~~gl~~a~~~~ig~--Ga~~~~~a~~~~~~---------------  105 (221)
                      ..++..+.+.+|  +.++++++.+.++..+... +..+++.+..|.+|+  |+||++++|+..+.               
T Consensus       243 ~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (502)
T TIGR01695       243 LLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLLTIPSSFG  320 (502)
T ss_pred             HHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334556667777  4578999999999988765 578999999999999  99999999988776               


Q ss_pred             -----H--------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHH
Q 038536          106 -----K--------------EVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGF  166 (221)
Q Consensus       106 -----~--------------~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~  166 (221)
                           +              |..+.+..++.+.++..++.+++.+..+++++.||+|.++..++.+. ++.+|+.+++..
T Consensus       321 l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~i~i~l~~~l~~  399 (502)
T TIGR01695       321 LLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV-VLNALLSLLLIF  399 (502)
T ss_pred             HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH-HHHHHHHHHHHH
Confidence                 1              45556778889999999999999999999999999999999998886 578898888764


Q ss_pred             hhcCccchhhhhhHHhHHHHHHHHHHHHHhhc
Q 038536          167 WLKSRGPGIWIGGIQAGALLQTILLSIITSPF  198 (221)
Q Consensus       167 ~~~~g~~Giw~~~~~~~~~~~~i~~~~~~~~~  198 (221)
                        .+|..|+|++ +.+++.+..++..+++++.
T Consensus       400 --~~G~~G~~~a-~~i~~~~~~~~~~~~~~~~  428 (502)
T TIGR01695       400 --PLGLVGIALA-TSAASMVSSVLLYLMLNRR  428 (502)
T ss_pred             --HHhhhHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence              5799999999 9999999999887777654

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.64  E-value=1.4e-14  Score=124.60  Aligned_cols=150  Identities=24%  Similarity=0.220  Sum_probs=133.9

Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--CCCCHHHHHHHHhH----------------
Q 038536           44 HNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GAGNSETAHIAVRV----------------  105 (221)
Q Consensus        44 ~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga~~~~~a~~~~~~----------------  105 (221)
                      ..+++.+++++|  +.++++++++.++..+...+..|++++.++.+++  |++|+|++++..+.                
T Consensus        13 ~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (342)
T TIGR00797        13 GLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLALLLGLPVLLVG   90 (342)
T ss_pred             HHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            446788999999  5689999999999999999999999999999999  99999999998877                


Q ss_pred             --------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHH-hhc-
Q 038536          106 --------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGF-WLK-  169 (221)
Q Consensus       106 --------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~-~~~-  169 (221)
                                    ++..+.+..++++.....++.+...++.+++|+.||++.+++.++++. ++.+++.+++.+ .++ 
T Consensus        91 ~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~~~~~li~~~~g~  169 (342)
T TIGR00797        91 YFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINIILNYILIFGKFGF  169 (342)
T ss_pred             HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHHHhHHHHhcCccc
Confidence                          567777889999999999999999999999999999999999999887 567888887776 567 


Q ss_pred             CccchhhhhhHHhHHHHHHHHHHHHHhh
Q 038536          170 SRGPGIWIGGIQAGALLQTILLSIITSP  197 (221)
Q Consensus       170 ~g~~Giw~~~~~~~~~~~~i~~~~~~~~  197 (221)
                      +|+.|++++ ..+++.+..++..+++++
T Consensus       170 ~g~~g~~~~-~~~~~~~~~~~~~~~~~~  196 (342)
T TIGR00797       170 LGIVGAALA-TVISYWLMFLLLLYYIKK  196 (342)
T ss_pred             cccHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence            889999999 999999999888777665

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=99.60  E-value=3.5e-16  Score=120.87  Aligned_cols=125  Identities=25%  Similarity=0.353  Sum_probs=115.2

Q ss_pred             hhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--CCCCHHHHHHHHhH---------
Q 038536           37 HLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GAGNSETAHIAVRV---------  105 (221)
Q Consensus        37 ~~~~~l~~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga~~~~~a~~~~~~---------  105 (221)
                      .+-..+-+..++.+++++|  ++++|+++++.++..+.+.+..|++.|.++++||  |++|+||+++..+.         
T Consensus         6 ~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~~~~   83 (162)
T PF01554_consen    6 QLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSLIIG   83 (162)
T ss_dssp             HHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccchhcc
Confidence            3334444667889999998  5789999999999999999999999999999999  99999999999877         


Q ss_pred             ---------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHH
Q 038536          106 ---------------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAA  163 (221)
Q Consensus       106 ---------------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~  163 (221)
                                           +|+.+.+.+++++..+..++.++..+..+++||.||++.+++.++++.|++.+|++|+
T Consensus        84 ~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~yl  162 (162)
T PF01554_consen   84 LLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPLAYL  162 (162)
T ss_dssp             HHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHHhC
Confidence                                 8899999999999999999999999999999999999999999999999999999875

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.24  E-value=3e-09  Score=95.88  Aligned_cols=130  Identities=15%  Similarity=0.077  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHcc--CCCCHHHHHHHHhH--------------------HHHHHH------HHhHHH
Q 038536           66 VCLATISNLFTIPDGLGTAASNRVSN--GAGNSETAHIAVRV--------------------KEVVDH------GTTMAP  117 (221)
Q Consensus        66 i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga~~~~~a~~~~~~--------------------~~v~~~------~~~~l~  117 (221)
                      ++.++..+...+..+++.+..|.+++  |+||+|++|+..+.                    +++...      +..++.
T Consensus       276 ~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~l~  355 (488)
T TIGR02900       276 MAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPDAGNFIR  355 (488)
T ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence            44456666777788999999999999  99999999988766                    444332      346788


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHhhcCccchhhhhhHHhHHHHHHHHHHHHHhh
Q 038536          118 LVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALLQTILLSIITSP  197 (221)
Q Consensus       118 i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw~~~~~~~~~~~~i~~~~~~~~  197 (221)
                      +.+...++++++.+.++++++.||+|.+++.++++. ++.+|+.+++...+++|..|+|++ +.+++.+..++..++.+|
T Consensus       356 i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~i~l~~~l~~~~~~G~~Gaaia-~~i~~~~~~~~~~~~~~~  433 (488)
T TIGR02900       356 VLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGA-IVKIILLFVLTSIPSINIYGYAIT-FIITSVLVTILNLAEIKK  433 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH-HHHHHHHHHHHhccccccHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999987 677888887764467899999999 999999999998887764

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.17  E-value=1.8e-08  Score=90.82  Aligned_cols=149  Identities=15%  Similarity=0.081  Sum_probs=126.7

Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHcc--CCCCHHHHHHHHhH---------------
Q 038536           44 HNFLTILSGLLPNPKLETSVLSVCLATISNLF-TIPDGLGTAASNRVSN--GAGNSETAHIAVRV---------------  105 (221)
Q Consensus        44 ~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~-~~~~gl~~a~~~~ig~--Ga~~~~~a~~~~~~---------------  105 (221)
                      ..+...+++.+++  -.+++..-+.++.++-. .+..++++..-|..++  -+||.++.++..+.               
T Consensus       218 ~lv~~~laS~l~~--G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~  295 (451)
T PF03023_consen  218 ILVDRALASFLGE--GSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIG  295 (451)
T ss_pred             HHHHHHHHhCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4446677788885  46899999999999865 5567899999999999  88999988888766               


Q ss_pred             -------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHH
Q 038536          106 -------------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGF  166 (221)
Q Consensus       106 -------------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~  166 (221)
                                         +|-.+...+.+.+++++.++.+++.++...+.+.||+|.++..++++. ++.+.+.+++..
T Consensus       296 ~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~-~lni~l~~~l~~  374 (451)
T PF03023_consen  296 LIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISV-VLNIILSILLVP  374 (451)
T ss_pred             HHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHH-HHHHHHHHHHHH
Confidence                               666777789999999999999999999999999999999999999887 467777766654


Q ss_pred             hhcCccchhhhhhHHhHHHHHHHHHHHHHhhc
Q 038536          167 WLKSRGPGIWIGGIQAGALLQTILLSIITSPF  198 (221)
Q Consensus       167 ~~~~g~~Giw~~~~~~~~~~~~i~~~~~~~~~  198 (221)
                        .+|..|+-++ ..++..+..++....++|.
T Consensus       375 --~~g~~Glala-~sl~~~i~~~~l~~~l~r~  403 (451)
T PF03023_consen  375 --FFGVAGLALA-TSLSAIISALLLYILLRRR  403 (451)
T ss_pred             --HHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence              6899999999 9999999999988877654

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>PRK15099 O-antigen translocase; Provisional

Probab=98.89  E-value=4.9e-07  Score=80.28  Aligned_cols=144  Identities=9%  Similarity=-0.105  Sum_probs=105.6

Q ss_pred             HHHHHH-hcCCCchhHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHccCCCCHHHHHHHHhH------------------
Q 038536           46 FLTILS-GLLPNPKLETSVLSVCLATIS-NLFTIPDGLGTAASNRVSNGAGNSETAHIAVRV------------------  105 (221)
Q Consensus        46 ~~~~~~-~~lg~~~~~~Aa~~i~~~v~~-~~~~~~~gl~~a~~~~ig~Ga~~~~~a~~~~~~------------------  105 (221)
                      .+..++ ..+|  +.+++.|+++.++.. +...+..+++++..|.+++ ++|+||+++..+.                  
T Consensus       237 ~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  313 (416)
T PRK15099        237 MMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSR-LTEKRDITREIVKALKFVLPAVAAASFTVWL  313 (416)
T ss_pred             HHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555 4788  578999999999977 5589999999999999999 3467788877665                  


Q ss_pred             --HHH--------HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHhhcCccchh
Q 038536          106 --KEV--------VDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGI  175 (221)
Q Consensus       106 --~~v--------~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Gi  175 (221)
                        |++        -+...+++++.....++......+...+-+.++++......+. ..++.+|+.+++..  .+|..|+
T Consensus       314 ~a~~ii~l~~g~~~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~l~i~l~~~li~--~~G~~G~  390 (416)
T PRK15099        314 LRDFAIWLLFSNKFTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVS-QFTLLTGFAHWLIP--LHGALGA  390 (416)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--HhhhHHH
Confidence              221        1224556666666666666666655555566676655555544 45677888888764  5799999


Q ss_pred             hhhhHHhHHHHHHHHHHHHHh
Q 038536          176 WIGGIQAGALLQTILLSIITS  196 (221)
Q Consensus       176 w~~~~~~~~~~~~i~~~~~~~  196 (221)
                      +++ +.+++.+..+++.+...
T Consensus       391 a~a-~~is~~~~~~~~~~~~~  410 (416)
T PRK15099        391 AQA-YMATYIVYFSLCCGVFL  410 (416)
T ss_pred             HHH-HHHHHHHHHHHHHHHHH
Confidence            999 99999999998876654

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=98.88  E-value=1e-07  Score=85.94  Aligned_cols=151  Identities=17%  Similarity=0.222  Sum_probs=109.0

Q ss_pred             HHHHHHhc-CCCchhHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHcc--CCCCHHHHHHHHhH----------------
Q 038536           46 FLTILSGL-LPNPKLETSVLSVCLATISNLFTIP-DGLGTAASNRVSN--GAGNSETAHIAVRV----------------  105 (221)
Q Consensus        46 ~~~~~~~~-lg~~~~~~Aa~~i~~~v~~~~~~~~-~gl~~a~~~~ig~--Ga~~~~~a~~~~~~----------------  105 (221)
                      +.+.+.++ +|  +++.++++.+.++..+...+. .|++.+....+++  |++|++++++..+.                
T Consensus        21 i~~~~l~r~Lg--~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~l~   98 (488)
T TIGR02900        21 IFRIVLSRILG--AEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILKVSLIFTLIWSLIVTAIV   98 (488)
T ss_pred             HHHHHHHHHhC--HHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666 68  567999999999888877765 5999999999999  99999999888775                


Q ss_pred             ----HHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHH-----HhhcC
Q 038536          106 ----KEVVDH------GTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALG-----FWLKS  170 (221)
Q Consensus       106 ----~~v~~~------~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~-----~~~~~  170 (221)
                          +.+.+.      ...++.+.....++.++..+..+.+||.+|.+..+..+++... +++.+...+.     +..++
T Consensus        99 ~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i-~~~~~~~~~~~~~~~~~~~~  177 (488)
T TIGR02900        99 FLLSPFIASTLLKDERSLYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI-VRISVVALLISAFLPYGLEY  177 (488)
T ss_pred             HHhhHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH-HHHHHHHHHHHHHHhcChHH
Confidence                222211      1234667778888889999999999999999999999988874 3333322221     12244


Q ss_pred             ccchhhhhhHHhHHHHHHHHHHHHHhhcCh
Q 038536          171 RGPGIWIGGIQAGALLQTILLSIITSPFNH  200 (221)
Q Consensus       171 g~~Giw~~~~~~~~~~~~i~~~~~~~~~~w  200 (221)
                      ++.|..++ ..++..+..++..+++++.+|
T Consensus       178 ~v~g~~~~-~~i~~~~~~~~~~~~~~~~~~  206 (488)
T TIGR02900       178 AVAGAYLS-LVLGELVSLLYLYFFFKRKKS  206 (488)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            56666667 677888877777665554433

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=98.84  E-value=2.2e-07  Score=84.17  Aligned_cols=176  Identities=16%  Similarity=0.047  Sum_probs=152.3

Q ss_pred             HHHHHHHHHHHHhHHhHHHHhhhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHcc--
Q 038536           15 SEEAGEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISN-LFTIPDGLGTAASNRVSN--   91 (221)
Q Consensus        15 ~~~a~~y~~~~~p~l~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~-~~~~~~gl~~a~~~~ig~--   91 (221)
                      .+...+-.+.+.|.++.     .+.+|....+.+.+++++|  +.++|+.++.++.... -+.+..|++.+..++.||  
T Consensus        24 ~~e~k~l~~ia~P~i~~-----~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~   96 (473)
T KOG1347|consen   24 VTESKELARLALPAILT-----FLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAF   96 (473)
T ss_pred             HHHHHHHHHHHHHHHHH-----HHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhh
Confidence            45677778888887666     4556666668889999999  5689999999877776 788999999999999999  


Q ss_pred             CCCCHHHHHHHHhH-----------------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 038536           92 GAGNSETAHIAVRV-----------------------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQ  142 (221)
Q Consensus        92 Ga~~~~~a~~~~~~-----------------------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~  142 (221)
                      |+++++....+...                             |++-..+..|........+.......+.-.+|+.+++
T Consensus        97 ga~~~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~  176 (473)
T KOG1347|consen   97 GAKKFTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSIT  176 (473)
T ss_pred             cccccchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCc
Confidence            99999987666544                             8888999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhHHHHHHHHHHhhcCccchhhhhhHHhHHHHHHHHHHHHHhhcC
Q 038536          143 DFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALLQTILLSIITSPFN  199 (221)
Q Consensus       143 ~~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw~~~~~~~~~~~~i~~~~~~~~~~  199 (221)
                      ....++...+. ++.+|+.|++.+++++|..|.-.+ ..+++.+.......+.....
T Consensus       177 ~~~~~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala-~~~s~w~~~~~l~~yi~~~~  231 (473)
T KOG1347|consen  177 LPLLVIGLVAL-VLHILLTWLLVSKLGLGIKGAALA-LVASYWLNVRILLLYAVLSG  231 (473)
T ss_pred             hHHHHHHHHHH-HHHHHHHHHhhhcccCCCccchHH-HHHHHHHHHHHHHHHheecC
Confidence            99999998887 678999999999999999999999 99999999888887776543

>TIGR01695 mviN integral membrane protein MviN

Probab=98.82  E-value=8.2e-08  Score=86.93  Aligned_cols=146  Identities=13%  Similarity=0.057  Sum_probs=106.6

Q ss_pred             HHHHHHhc-CCCchhHH-HHHHHHHHHHHHHHhHHH--HHHHHHHHHHccCCCCH-HHHHHHHhH---------------
Q 038536           46 FLTILSGL-LPNPKLET-SVLSVCLATISNLFTIPD--GLGTAASNRVSNGAGNS-ETAHIAVRV---------------  105 (221)
Q Consensus        46 ~~~~~~~~-lg~~~~~~-Aa~~i~~~v~~~~~~~~~--gl~~a~~~~ig~Ga~~~-~~a~~~~~~---------------  105 (221)
                      +...+.++ +|+  .+. ++++++.++..+......  |++.+..+...+ +++. |++++....               
T Consensus        22 ~~~~~~a~~lG~--~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (502)
T TIGR01695        22 VRDAIIASAFGA--GLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTK-AKKKEKEARRAFANTVTTLLILSLLLVVL   98 (502)
T ss_pred             HHHHHHHHHhCC--ChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666 884  567 799999998877766644  566666555554 3332 566644322               


Q ss_pred             ------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHh
Q 038536          106 ------------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFW  167 (221)
Q Consensus       106 ------------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~  167 (221)
                                        +|..+.+..++++..++.++.++..+.++++|+.||.+.+++.+++...+ .+..  ++...
T Consensus        99 ~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~i~-~i~~--~~~~~  175 (502)
T TIGR01695        99 IGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFSPILFNIG-VILS--LLFFD  175 (502)
T ss_pred             HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHHHHHHHHH-HHHH--HHHHH
Confidence                              35556688999999999999999999999999999999999999988743 3332  22234


Q ss_pred             hcCccchhh--hhhHHhHHHHHHHHHHHHHhhc
Q 038536          168 LKSRGPGIW--IGGIQAGALLQTILLSIITSPF  198 (221)
Q Consensus       168 ~~~g~~Giw--~~~~~~~~~~~~i~~~~~~~~~  198 (221)
                      .++|..|+.  ++ ..+++.+..++..+++++.
T Consensus       176 ~~~g~~~~~~~~~-~~i~~~~~~~~~~~~~~~~  207 (502)
T TIGR01695       176 WNYGQYSLALAIG-VLIGGVAQLLIQLPFLRKA  207 (502)
T ss_pred             cccchHHHHHHHH-HHHHHHHHHHHHHHHHHHC
Confidence            578898888  88 8899998888877666543

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>PRK15099 O-antigen translocase; Provisional

Probab=98.64  E-value=1e-06  Score=78.32  Aligned_cols=148  Identities=13%  Similarity=0.082  Sum_probs=103.1

Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHccCCCCHHHHHHHHhH-----------------
Q 038536           44 HNFLTILSGLLPNPKLETSVLSVCLATISNLFTI-PDGLGTAASNRVSNGAGNSETAHIAVRV-----------------  105 (221)
Q Consensus        44 ~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~-~~gl~~a~~~~ig~Ga~~~~~a~~~~~~-----------------  105 (221)
                      +...-.++..+|  +++.+..+....+..+...+ ..|++.+.+..+++=++|+|++++....                 
T Consensus        22 ~l~~~i~ar~Lg--~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~   99 (416)
T PRK15099         22 LLVVKLLAVSFG--PAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQYHDQPQQLRAVVGTSSAMVLGFSTLLALVFL   99 (416)
T ss_pred             HHHHHHHHhhcC--cHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445666778  46777777777777766555 6777777777888734678888886655                 


Q ss_pred             ---HHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHhhcCccchhh
Q 038536          106 ---KEVVDH------GTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIW  176 (221)
Q Consensus       106 ---~~v~~~------~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw  176 (221)
                         +.+...      ....+.+..+..++..+.....+++||.||++.++..++++.. +++.+ +++.+.. .|+.|.-
T Consensus       100 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~-~~i~l-~i~~~~~-~Gv~Ga~  176 (416)
T PRK15099        100 LAAAPISQGLFGHTDYQGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGSL-IGVAA-YYLCYRL-GGYEGAL  176 (416)
T ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHH-hcchHHH
Confidence               222111      1234555555566778888999999999999999999988874 44444 4444322 3999999


Q ss_pred             hhhHHhHHHHHHHHHHHHHhh
Q 038536          177 IGGIQAGALLQTILLSIITSP  197 (221)
Q Consensus       177 ~~~~~~~~~~~~i~~~~~~~~  197 (221)
                      ++ +.+++.+..+.+.+.+++
T Consensus       177 ia-t~i~~~i~~~~~~~~~~~  196 (416)
T PRK15099        177 LG-LALVPALVVLPAGIMLIR  196 (416)
T ss_pred             HH-HHHHHHHHHHHHHHHHHH
Confidence            99 999998888776666544

>TIGR00797 matE putative efflux protein, MATE family

Probab=98.53  E-value=3.3e-06  Score=72.55  Aligned_cols=60  Identities=30%  Similarity=0.378  Sum_probs=53.6

Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--CCCCHHHHHHHHhH
Q 038536           44 HNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GAGNSETAHIAVRV  105 (221)
Q Consensus        44 ~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga~~~~~a~~~~~~  105 (221)
                      ..+...+++.+|  +.++++|+++.++..+...++.+++.+..+.+++  |+||.+++++..+.
T Consensus       236 ~~~~~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  297 (342)
T TIGR00797       236 FALLALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARV  297 (342)
T ss_pred             HHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            445567788888  5689999999999999999999999999999999  99999999998875

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=98.41  E-value=8.5e-05  Score=67.78  Aligned_cols=149  Identities=15%  Similarity=-0.008  Sum_probs=120.8

Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHcc--CCCCHHHHHHHHhH---------------
Q 038536           44 HNFLTILSGLLPNPKLETSVLSVCLATISNLF-TIPDGLGTAASNRVSN--GAGNSETAHIAVRV---------------  105 (221)
Q Consensus        44 ~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~-~~~~gl~~a~~~~ig~--Ga~~~~~a~~~~~~---------------  105 (221)
                      ..+++.+++.+.++  .++...-+.++.++=. .+..++++...+..++  ..+|.++.++..+.               
T Consensus       252 lli~~~iAS~l~~G--sis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~  329 (518)
T COG0728         252 LLIDTAIASFLAEG--SVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAG  329 (518)
T ss_pred             HHHHHHHHHhhccc--cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34778889999743  5788888888888844 6778889999999999  88888887766554               


Q ss_pred             -------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHH
Q 038536          106 -------------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGF  166 (221)
Q Consensus       106 -------------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~  166 (221)
                                         ++-..+..+.+..++++.++....-+..-.+.+.+|+|.|+.+.+++. ++++-+++++. 
T Consensus       330 l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~-~~n~~l~~~l~-  407 (518)
T COG0728         330 LLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISL-VVNILLNLLLI-  407 (518)
T ss_pred             HHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHH-HHHHHHHHHHH-
Confidence                               666677788999999999999999999999999999999999999997 55676774443 


Q ss_pred             hhcCccchhhhhhHHhHHHHHHHHHHHHHhhc
Q 038536          167 WLKSRGPGIWIGGIQAGALLQTILLSIITSPF  198 (221)
Q Consensus       167 ~~~~g~~Giw~~~~~~~~~~~~i~~~~~~~~~  198 (221)
                       +.+|..|+-.+ ..++.++.+.+.++.++|.
T Consensus       408 -~~~~~~giala-~s~a~~~~~~ll~~~l~k~  437 (518)
T COG0728         408 -PPLGHVGLALA-TSLAAWVNALLLYYLLRKR  437 (518)
T ss_pred             -hhccchHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence             46788888888 7787778887777766543

>PRK10459 colanic acid exporter; Provisional

Probab=98.25  E-value=0.00036  Score=63.21  Aligned_cols=143  Identities=16%  Similarity=0.130  Sum_probs=104.0

Q ss_pred             HHHHHhc-CCCchhHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHccCCCCHHHHHHHHhH-------------------
Q 038536           47 LTILSGL-LPNPKLETSVLSVCLATISNLFT-IPDGLGTAASNRVSNGAGNSETAHIAVRV-------------------  105 (221)
Q Consensus        47 ~~~~~~~-lg~~~~~~Aa~~i~~~v~~~~~~-~~~gl~~a~~~~ig~Ga~~~~~a~~~~~~-------------------  105 (221)
                      +.++.++ +|  +.+++.|+.+.++..+... +...++...-|..++-.+|.++.++..+.                   
T Consensus       230 d~~~lg~~lg--~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~  307 (492)
T PRK10459        230 DTILIGRILG--AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKIQDDTEKLRVGFLKLLSVLGIINFPLLLGLMVV  307 (492)
T ss_pred             chhhhhHhhc--hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555 45  4678999999988776433 33345666777777744566666665444                   


Q ss_pred             -HHHHH--------HHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHhhcCccchhh
Q 038536          106 -KEVVD--------HGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIW  176 (221)
Q Consensus       106 -~~v~~--------~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw  176 (221)
                       |+++.        .+...+.+.++..++.......+.++++.||+|.++..+++.. ++.+|..+++.  ..+|..|+.
T Consensus       308 a~~ii~ll~g~~~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~~--~~~G~~g~a  384 (492)
T PRK10459        308 SNNFVPLVFGEKWNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVIGG--QLAGLIGVA  384 (492)
T ss_pred             hHHHHHHhcChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHHH--hhccHHHHH
Confidence             44332        3456778888888888889999999999999999999888776 45677766554  357999999


Q ss_pred             hhhHHhHHHHHHHHHHHHH
Q 038536          177 IGGIQAGALLQTILLSIIT  195 (221)
Q Consensus       177 ~~~~~~~~~~~~i~~~~~~  195 (221)
                      ++ +.+++.+..++..+..
T Consensus       385 ~a-~~i~~~~~~~~~~~~~  402 (492)
T PRK10459        385 LG-FLLVQIINTILSYFLM  402 (492)
T ss_pred             HH-HHHHHHHHHHHHHHHH
Confidence            99 9999988888877766

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=98.04  E-value=0.00015  Score=65.40  Aligned_cols=145  Identities=14%  Similarity=0.082  Sum_probs=116.6

Q ss_pred             HhcCCCchhHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHcc-CCCCHHHHHHHHhH----------------------
Q 038536           51 SGLLPNPKLETSVLSVCLATISNLFTIPD--GLGTAASNRVSN-GAGNSETAHIAVRV----------------------  105 (221)
Q Consensus        51 ~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~--gl~~a~~~~ig~-Ga~~~~~a~~~~~~----------------------  105 (221)
                      +..+|.+ .+.-|+.++.++-.+......  +++.+.-|...+ =+++.|++++..+.                      
T Consensus         2 A~~fG~s-~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~   80 (451)
T PF03023_consen    2 AYFFGAS-AEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAREKGEEEARRFISTLLTILLIISLLLTLLGILFAPP   80 (451)
T ss_pred             cHHhcCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566763 456789999999999887654  478898899988 76778888887765                      


Q ss_pred             ----------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHhhcCc---c
Q 038536          106 ----------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSR---G  172 (221)
Q Consensus       106 ----------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g---~  172 (221)
                                ++..+.+.+++++..+..++.++..++.+++++.+|-..+....++.+... +...+++  ....|   +
T Consensus        81 iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~-I~~~~~~--~~~~~~~~i  157 (451)
T PF03023_consen   81 IVRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSI-ILSLLLL--SNSWGQENI  157 (451)
T ss_pred             HHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH-HHHHHHH--HHhcCchHH
Confidence                      888999999999999999999999999999999999999999888877432 3322332  23456   7


Q ss_pred             chhhhhhHHhHHHHHHHHHHHHHhhcCh
Q 038536          173 PGIWIGGIQAGALLQTILLSIITSPFNH  200 (221)
Q Consensus       173 ~Giw~~~~~~~~~~~~i~~~~~~~~~~w  200 (221)
                      .++-+| ..++..++.++.+...++..+
T Consensus       158 ~~la~g-~~~g~~~~~l~~l~~~~~~~~  184 (451)
T PF03023_consen  158 YALAWG-VLIGAIIQFLIQLPYLRRFGF  184 (451)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHCCC
Confidence            888889 999999999998888876543

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=97.94  E-value=0.00084  Score=60.53  Aligned_cols=155  Identities=17%  Similarity=0.185  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHhHHhHHHHhhhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--CC
Q 038536           16 EEAGEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GA   93 (221)
Q Consensus        16 ~~a~~y~~~~~p~l~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga   93 (221)
                      +...++.+..+|.....     ...++....+..+.++.-. +.+++-|+...++......+...++...-|.+++  .+
T Consensus       210 ~~~~~~l~~~~p~~~~~-----~~~~l~~~~D~~~i~~~l~-~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~  283 (480)
T COG2244         210 ALLKELLRFGLPLLLSS-----LLNFLFTNIDTLLLGLFLG-PAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAE  283 (480)
T ss_pred             HHHHHHHHHhhHHHHHH-----HHHHHHHHHHHHHHHHHhh-hhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            44555556666655543     2222234466677766432 4678899988999999999999999999999999  77


Q ss_pred             CCHHHHHHHHhH--------------------HHHHH------H--HHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhH
Q 038536           94 GNSETAHIAVRV--------------------KEVVD------H--GTTMAPLVCLLVILESLKCVLSGVARGCGWQDFG  145 (221)
Q Consensus        94 ~~~~~a~~~~~~--------------------~~v~~------~--~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~  145 (221)
                      +|.++.++..+.                    ++...      +  +...+.+..+..++.+........+++.|+++..
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~  363 (480)
T COG2244         284 GDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLL  363 (480)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhh
Confidence            777766555543                    22211      1  6678899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHhhcCccchhhhhhH
Q 038536          146 AYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGI  180 (221)
Q Consensus       146 ~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw~~~~  180 (221)
                      +..+.++. ++.+.+.+++.  ..+|..|...+ .
T Consensus       364 ~~~~~~~~-i~~~~l~~~li--~~~g~~g~~~a-~  394 (480)
T COG2244         364 LLISLISA-LLNLILNLLLI--PRFGLIGAAIA-T  394 (480)
T ss_pred             HHHHHHHH-HHHHHHHhHHH--HhhhhhhHHHH-H
Confidence            99999887 44455555554  36678888888 6

>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain

Probab=97.68  E-value=0.00048  Score=51.88  Aligned_cols=79  Identities=15%  Similarity=0.113  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHhhcCccchhhhhhHHhHHHHHHHHHHHHH
Q 038536          116 APLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALLQTILLSIIT  195 (221)
Q Consensus       116 l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw~~~~~~~~~~~~i~~~~~~  195 (221)
                      +.+.+...++.++....+.++++.||+|..+..++.+. ++.+++.+++.  +++|..|.-++ +.+++.+..++..+..
T Consensus         2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~li--~~~G~~Gaa~a-~~i~~~~~~~~~~~~~   77 (146)
T PF14667_consen    2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYILI--PRFGIYGAAIA-TAISEIVSFILNLWYV   77 (146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHHH--HHHHHhHHHHH-HHHHHHHHHHHHHHHH
Confidence            56788999999999999999999999999999998887 67788888884  57899999999 9999999988888777


Q ss_pred             hhc
Q 038536          196 SPF  198 (221)
Q Consensus       196 ~~~  198 (221)
                      +|.
T Consensus        78 ~k~   80 (146)
T PF14667_consen   78 RKK   80 (146)
T ss_pred             HHH
Confidence            654

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=96.58  E-value=0.16  Score=41.35  Aligned_cols=149  Identities=21%  Similarity=0.207  Sum_probs=91.4

Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHcc-CCCCHHHHHHHHhH---------------H
Q 038536           44 HNFLTILSGLLPNPKLETSVLSVCLATISNLFTI-PDGLGTAASNRVSN-GAGNSETAHIAVRV---------------K  106 (221)
Q Consensus        44 ~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~-~~gl~~a~~~~ig~-Ga~~~~~a~~~~~~---------------~  106 (221)
                      +...-.++..+|  +++..-++...++..+...+ -.|++.+..-.+++ .++ .++.++....               .
T Consensus        20 ~~~~~il~r~l~--~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~   96 (273)
T PF01943_consen   20 FITIPILARYLG--PEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK-KELRSAYFSSVLFLLLIFSLIFLLIL   96 (273)
T ss_pred             HHHHHHHHHHhC--HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445556677  56788888888888876665 68888888888887 433 2233333222               0


Q ss_pred             HH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHhhcCccchhhhhhH
Q 038536          107 EV------VDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGI  180 (221)
Q Consensus       107 ~v------~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw~~~~  180 (221)
                      -+      -+....+........++........+.+++.++.+.....++..... .+....++. ..+.+..+.-.+ .
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~-~  173 (273)
T PF01943_consen   97 LIASFFGNPSLSLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL-SLLLILLLL-FLGSSLWGFLLG-L  173 (273)
T ss_pred             HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHhhhHHHHHHH-H
Confidence            00      01111122222222246778888999999999999988888887743 332323332 234447777777 7


Q ss_pred             HhHHHHHHHHHHHHHhhc
Q 038536          181 QAGALLQTILLSIITSPF  198 (221)
Q Consensus       181 ~~~~~~~~i~~~~~~~~~  198 (221)
                      .++..+..++.....++.
T Consensus       174 ~~~~~~~~~~~~~~~~~~  191 (273)
T PF01943_consen  174 VISSLVSLIISLFYLRRK  191 (273)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888888877777666643

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences

Probab=96.28  E-value=0.64  Score=40.06  Aligned_cols=98  Identities=10%  Similarity=0.066  Sum_probs=71.3

Q ss_pred             HHHHHHhc-CCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHccCCCCHHHHHHHHhH-------------------
Q 038536           46 FLTILSGL-LPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSNGAGNSETAHIAVRV-------------------  105 (221)
Q Consensus        46 ~~~~~~~~-lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~Ga~~~~~a~~~~~~-------------------  105 (221)
                      +++.-.++ ..++.+.+|+|+++..+.-++..+...+-+.+..++.+ +++..++-...-.                   
T Consensus        33 iiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-~rsrr~~vl~~~vag~v~avi~~LIa~TpLG~  111 (345)
T PF07260_consen   33 IINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-KRSRRKAVLCMAVAGAVAAVIHLLIAWTPLGN  111 (345)
T ss_pred             HHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-hhhhHHHHHHHHHHHHHHHHHHHHHHhCchHH
Confidence            33344444 44444569999999999999999999999999888863 2222222111111                   


Q ss_pred             ----------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchh
Q 038536          106 ----------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDF  144 (221)
Q Consensus       106 ----------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~  144 (221)
                                |++.+.+...+.++.+..+++++.-...|++-=..++..
T Consensus       112 ~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i  160 (345)
T PF07260_consen  112 YLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI  160 (345)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence                      899999999999999999999999999999984444433

The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=95.96  E-value=0.68  Score=37.38  Aligned_cols=143  Identities=17%  Similarity=0.174  Sum_probs=88.3

Q ss_pred             HHHHHHhcCCCchhHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHccCCCCHHHHHHHHhH-------------H---HH
Q 038536           46 FLTILSGLLPNPKLETSVLSVCLATISNLFTI-PDGLGTAASNRVSNGAGNSETAHIAVRV-------------K---EV  108 (221)
Q Consensus        46 ~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~-~~gl~~a~~~~ig~Ga~~~~~a~~~~~~-------------~---~v  108 (221)
                      ....++..+|  +++...++....+..+...+ ..|+......   +.++++++.++..+.             .   -+
T Consensus         7 ~~~~lar~l~--~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (251)
T PF13440_consen    7 FLILLARYLG--PEDFGIYALIFSIVSILSIVASLGLRQSLVR---SAARDKQDIRSLLRFSLLVSLLLAVILAILAILI   81 (251)
T ss_pred             HHHHHHHHCC--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556677  56788888888888877665 4555444332   334555555555443             0   00


Q ss_pred             HHH-----HHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHhhcCccchhhhhhHHhH
Q 038536          109 VDH-----GTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAG  183 (221)
Q Consensus       109 ~~~-----~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw~~~~~~~  183 (221)
                      ...     ...++....+..++........+.+|+.+|.+......+....+. ......+. ..+.+..+..++ ..++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~-~~~~  158 (251)
T PF13440_consen   82 AYFFGDPELFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLR-LLLLVLLL-YLGLNLWSILLA-FIIS  158 (251)
T ss_pred             HHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH-HHHHHHHH-HHHhhHHHHHHH-HHHH
Confidence            000     112234455667778888899999999999999988888887543 22222222 234477777788 7888


Q ss_pred             HHHHHHHHHHHHh
Q 038536          184 ALLQTILLSIITS  196 (221)
Q Consensus       184 ~~~~~i~~~~~~~  196 (221)
                      ..+..++.....+
T Consensus       159 ~~~~~~~~~~~~~  171 (251)
T PF13440_consen  159 ALLALLISFYLLR  171 (251)
T ss_pred             HHHHHHHHHHHhc
Confidence            8877766655443

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=95.47  E-value=1.7  Score=40.16  Aligned_cols=149  Identities=12%  Similarity=0.081  Sum_probs=106.3

Q ss_pred             HHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHcc--CCCCHHHHHHHHhH-----------------
Q 038536           47 LTILSGLLPNPKLETSVLSVCLATISNLFTIPDG--LGTAASNRVSN--GAGNSETAHIAVRV-----------------  105 (221)
Q Consensus        47 ~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~g--l~~a~~~~ig~--Ga~~~~~a~~~~~~-----------------  105 (221)
                      ...++..+|.+ ....|+.+++++-.++--.+.+  ++++--+.-.+  .++..|++++....                 
T Consensus        31 d~~iA~~fGa~-~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~~~f~~~v~~~l~~~ll~vt~L~~  109 (518)
T COG0728          31 DVLIAAAFGAG-AAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAARFFSRLVTGLLTLVLLLVTLLGI  109 (518)
T ss_pred             HHHHHHHhCCc-hHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45778888864 4567999999998887776544  56888888877  44444444444333                 


Q ss_pred             ---H-------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHhhc
Q 038536          106 ---K-------------EVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLK  169 (221)
Q Consensus       106 ---~-------------~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~  169 (221)
                         |             +....+....++.....++.++..+..++++..++-..+.+.-++-+..+ |..+.++....+
T Consensus       110 l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a~aPvl~Nv~~-I~~~l~~~~~~~  188 (518)
T COG0728         110 LFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPAFAPVLLNVSV-IGLALFLGPYFD  188 (518)
T ss_pred             HHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhhhhHHHHHHHH-HHHHHHhccchh
Confidence               2             22235667779999999999999999999999999999998888777543 333444443333


Q ss_pred             CccchhhhhhHHhHHHHHHHHHHHHHhhc
Q 038536          170 SRGPGIWIGGIQAGALLQTILLSIITSPF  198 (221)
Q Consensus       170 ~g~~Giw~~~~~~~~~~~~i~~~~~~~~~  198 (221)
                      ....++-+| ..++-+.+..+.+..+++.
T Consensus       189 ~~~~~La~g-vl~Gg~~Q~l~~lp~l~~~  216 (518)
T COG0728         189 PPLLALAWG-VLIGGLLQLLVQLPALRKA  216 (518)
T ss_pred             hHHHHHHHH-HHHHHHHHHHHHHHHHHHc
Confidence            234566677 7888888888888888765

>PRK10459 colanic acid exporter; Provisional

Probab=94.66  E-value=2.3  Score=38.42  Aligned_cols=139  Identities=13%  Similarity=0.130  Sum_probs=82.6

Q ss_pred             HHHHHhcCCCchhHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHccCCCCHHHHHHHHhH----------------HHHH
Q 038536           47 LTILSGLLPNPKLETSVLSVCLATISNLFTI-PDGLGTAASNRVSNGAGNSETAHIAVRV----------------KEVV  109 (221)
Q Consensus        47 ~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~-~~gl~~a~~~~ig~Ga~~~~~a~~~~~~----------------~~v~  109 (221)
                      ...++..+|  +++...++.+..+..+...+ -.|++.+.   +-+-.++.+........                +-+.
T Consensus        29 ~~ilaR~L~--p~~~G~~~~~~~~~~~~~~~~~~Gl~~ai---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  103 (492)
T PRK10459         29 LTVLARILD--NHQFGLLTMSLVIIGFADTLSDMGIGASI---IQRQDISHLQLSTLYWLNVGLGIVVFVLVFLLSPLIA  103 (492)
T ss_pred             HHHHHHhCC--HHHccHHHHHHHHHHHHHHHHHcCHHHHH---HhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455577  45666677777666664433 34565543   22233333333333322                1111


Q ss_pred             -----HHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHhhcCccchhhhhhHHhHH
Q 038536          110 -----DHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGA  184 (221)
Q Consensus       110 -----~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw~~~~~~~~  184 (221)
                           +.....+.+.++..++.++.....+.+++..+.+.....+++.... ...+...+. ..++|..+.-++ ..++.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~~~i~-~~~~~i~~~-~~~~g~~~l~~~-~~~~~  180 (492)
T PRK10459        104 DFYHNPELAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEISAVVA-GFTFAVVSA-FFWPGALAAILG-YLVNS  180 (492)
T ss_pred             HHcCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHH-HHCCcHHHHHHH-HHHHH
Confidence                 0122455666677777888888899999999999888888877643 344444443 357788888788 78887


Q ss_pred             HHHHHHHHH
Q 038536          185 LLQTILLSI  193 (221)
Q Consensus       185 ~~~~i~~~~  193 (221)
                      .+..++...
T Consensus       181 ~~~~l~~~~  189 (492)
T PRK10459        181 SVRTLLFGY  189 (492)
T ss_pred             HHHHHHHHH
Confidence            777665543

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=90.53  E-value=3.2  Score=37.28  Aligned_cols=107  Identities=19%  Similarity=0.194  Sum_probs=74.0

Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHcc--CCCCHHHHHHH-HhH------------HH
Q 038536           44 HNFLTILSGLLPNPKLETSVLSVCLATISNLFTIP-DGLGTAASNRVSN--GAGNSETAHIA-VRV------------KE  107 (221)
Q Consensus        44 ~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~-~gl~~a~~~~ig~--Ga~~~~~a~~~-~~~------------~~  107 (221)
                      +.....++..+|  +++..-++.+..+..+...+. .|+..+..-.+++  ..++....+.. ...            ..
T Consensus        27 ~i~~~~lar~lg--~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  104 (480)
T COG2244          27 LITIPLLARLLG--PEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLLILLSVLLLLLLALILLLLLLL  104 (480)
T ss_pred             HHHHHHHHHHhC--cccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455566677  345666777787788777766 8899999999988  44454545554 333            11


Q ss_pred             HH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 038536          108 VV-------DHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAA  152 (221)
Q Consensus       108 v~-------~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~  152 (221)
                      +.       +.....+.......+......+..+.+|+.++.+......+..
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (480)
T COG2244         105 IAYLLAPIDPVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIVSS  156 (480)
T ss_pred             HHHHhcccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Confidence            11       1233456677888889999999999999999999998884444

>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []

Probab=80.50  E-value=18  Score=33.85  Aligned_cols=84  Identities=7%  Similarity=0.040  Sum_probs=64.8

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH--hHHHHHHHHHHhhcCccchhhhhhHHhHHHHHHHH
Q 038536          113 TTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYL--CGIPVAAALGFWLKSRGPGIWIGGIQAGALLQTIL  190 (221)
Q Consensus       113 ~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~--i~ip~~~~~~~~~~~g~~Giw~~~~~~~~~~~~i~  190 (221)
                      ...+..++...|+.+++-+..+.+++..+++-....+..-..+  +.+..+|++..+ ++|..|+-++ -.+...+|.+.
T Consensus       385 ~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~A-N~iNM~lRI~y  462 (549)
T PF04506_consen  385 PSLLRAYCYYIPFLAINGITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILA-NCINMSLRIIY  462 (549)
T ss_pred             hHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHH-HHHHHHHHHHH
Confidence            4567888999999999999999999999887665444333321  223456777665 7999999999 99999999999


Q ss_pred             HHHHHhhc
Q 038536          191 LSIITSPF  198 (221)
Q Consensus       191 ~~~~~~~~  198 (221)
                      +..++++.
T Consensus       463 s~~fI~~~  470 (549)
T PF04506_consen  463 SLRFIRRY  470 (549)
T ss_pred             HHHHHHHH
Confidence            98887653

RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	221
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	9e-11

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score = 59.6 bits (145), Expect = 9e-11
 Identities = 33/185 (17%), Positives = 61/185 (32%), Gaps = 40/185 (21%)

Query: 46  FLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GAGNSETAHIAV 103
            + +L   L +  +  +   V L   S +F  P  +G A S RV +  G  +++ A IA 
Sbjct: 260 VVALLVAPLGSTVV--AAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAA 317

Query: 104 RV------------------------------KEVVDHGTTMAPLVCLLVILESLKCVLS 133
            V                              + VV     +     +   +++++ V +
Sbjct: 318 NVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAA 377

Query: 134 GVARGCGWQDFGAYVYLAASYLCGIPVAAALGF-----WLKSRGPGIWIGGIQAGALLQT 188
           G  RG        +    + ++ G+P    LG             G W+G I  G     
Sbjct: 378 GSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFI-IGLSAAA 436

Query: 189 ILLSI 193
           ++L  
Sbjct: 437 LMLGQ 441

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	221
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.84
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.49

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.84  E-value=2.2e-21  Score=171.16  Aligned_cols=153  Identities=21%  Similarity=0.290  Sum_probs=139.7

Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--CCCCHHHHHHHHhH----------------
Q 038536           44 HNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GAGNSETAHIAVRV----------------  105 (221)
Q Consensus        44 ~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga~~~~~a~~~~~~----------------  105 (221)
                      +.+++.+++++|  +.++|+|+++.++.++.+++..|++++..+.+|+  |+||+|++|+..+.                
T Consensus       258 ~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (460)
T 3mkt_A          258 FAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLT  335 (460)
T ss_dssp             HHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556778889998  5789999999999999999999999999999999  99999999988776                


Q ss_pred             --------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHh----
Q 038536          106 --------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFW----  167 (221)
Q Consensus       106 --------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~----  167 (221)
                                    +|+.+.+..++++.++..++++++.+..++++|.||+|.++..++++.|++++|+.+++.+.    
T Consensus       336 ~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~  415 (460)
T 3mkt_A          336 VLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLT  415 (460)
T ss_dssp             HHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence                          57788899999999999999999999999999999999999999999999999999999876    


Q ss_pred             hc-CccchhhhhhHHhHHHHHHHHHHHHHhhcC
Q 038536          168 LK-SRGPGIWIGGIQAGALLQTILLSIITSPFN  199 (221)
Q Consensus       168 ~~-~g~~Giw~~~~~~~~~~~~i~~~~~~~~~~  199 (221)
                      ++ +|..|+|++ +.+++.+..++..+++++..
T Consensus       416 ~~~~G~~G~~~a-~~~~~~~~~~~~~~~~~~~~  447 (460)
T 3mkt_A          416 EQPLGAKGFWLG-FIIGLSAAALMLGQRLYWLQ  447 (460)
T ss_dssp             CCSSHHHHHHHH-HHHHHHHHHHHHHSSSSSSC
T ss_pred             ccccCchhHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            66 999999999 99999999988877766543

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.49  E-value=2.9e-13  Score=119.03  Aligned_cols=176  Identities=15%  Similarity=0.126  Sum_probs=151.1

Q ss_pred             HHHHHHHHHHHHHhHHhHHHHhhhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--
Q 038536           14 ISEEAGEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--   91 (221)
Q Consensus        14 ~~~~a~~y~~~~~p~l~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~--   91 (221)
                      ..+..++.++..+|....+ ....+..+    +++.+++++|  ++++++++++.++..+...+..|++.+..+.+++  
T Consensus         7 ~~~~~k~~~~~~~p~~~~~-~~~~~~~~----v~~~~~~~lg--~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~   79 (460)
T 3mkt_A            7 YKKEASNLIKLATPVLIAS-VAQTGMGF----VDTIMAGGVS--AIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLN   79 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHHHHHH----HHHHTHHHHT--TTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHH----HHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456788888999988876 44444444    6678888898  5679999999999999899999999999999999  


Q ss_pred             CCCCHHHHHHHHhH-----------------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 038536           92 GAGNSETAHIAVRV-----------------------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQ  142 (221)
Q Consensus        92 Ga~~~~~a~~~~~~-----------------------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~  142 (221)
                      |++|++++++..+.                             +++.+.+..++++.....++.....+.++++||.||+
T Consensus        80 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~  159 (460)
T 3mkt_A           80 GAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLT  159 (460)
T ss_dssp             SSSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCC
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            99999999988766                             7778889999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhHHHHHHHHHHh-h---cCccchhhhhhHHhHHHHHHHHHHHHHhhc
Q 038536          143 DFGAYVYLAASYLCGIPVAAALGFW-L---KSRGPGIWIGGIQAGALLQTILLSIITSPF  198 (221)
Q Consensus       143 ~~~~~~~~~~~~~i~ip~~~~~~~~-~---~~g~~Giw~~~~~~~~~~~~i~~~~~~~~~  198 (221)
                      +.++..++++. ++.+++.+++.+. +   ++|+.|..++ +.+++.+..++..+++++.
T Consensus       160 ~~~~~~~~~~~-~~~i~l~~~li~~~~~~p~~g~~g~a~a-~~i~~~~~~~~~~~~~~~~  217 (460)
T 3mkt_A          160 KPAMVIGFIGL-LLNIPLNWIFVYGKFGAPELGGVGCGVA-TAIVYWIMLLLLLFYIVTS  217 (460)
T ss_dssp             TTTHHHHHHHH-HHHHHHHHHHHSCCTTCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHcCCCCCcccchhhHHHH-HHHHHHHHHHHHHHHHHhC
Confidence            99999999987 4678888888764 3   7999999999 9999999999887777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00