Citrus Sinensis ID: 038538

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
Protein Sequence
MASSSELSNISSEEAESTSTNSSTNDSLSQQRSRSDTGCRSENHPGSSRPKRKRESESGTKHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIKGDSAVLNFPELVEVLPRPVSLLPRDIQTAATKAASMIIDPSSSTCDEVSAQPQQDEQAELGEIVQLPNIEGSFDFDSAESHNELNIPIHDDLFDGWIYPPVVQDFVAEFPEHILAAESLIPGDFEASSVWD
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEccccccccEEEcccccHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHccccccccccccccccHHHccccccccccccccccccccccccccccccccccHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHHcccEEEccccHHHcccccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHcccccccccccccccccccHHHHccccccccHHccccccccccccHccccccccccHcccccccccccccc
Coil and Loop (DISEMBL)
massselsnisseeaeststnsstndslsqqrsrsdtgcrsenhpgssrpkrkresesgtkhpvyrgvrmrswgkwVSEIREprkksriwlgtfrtpemaARAHDVAALSikgdsavlnfpelvevlprpvsllprDIQTAATKAAsmiidpssstcdevsaqpqqdEQAELgeivqlpniegsfdfdsaeshnelnipihddlfdgwiyppvvqdfVAEFPEHILAAeslipgdfeassvwd
Flexible Loop (DISEMBL)
massselsnisseeaeststnsstndslsqqrsrsdtgcrsenhpgssrpkrkresesgtkhpvyrgvrmrswgkwvseireprkksriwlgtfrTPEMAARAHDVAALSIKGDSAVLNFPELVEVlprpvsllPRDIQTAATKAASMIIDPSSSTCDEVSAQPQQDEQAELGEIVQLPNIEGSFDFDSAESHNELNIPIHDDLFDGWIYPPVVQDFVAEFPEHILAAEslipgdfeassvwd
Low Complexity Region (SEG)
MAssselsnisseeaeststnsstndslsQQRSRSDTGCRSENHpgssrpkrkresesgTKHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIKGDSAVLNFPELVEVLPRPVSLLPRDIQTAATKAASMIIDPSSSTCDEVSAQPQQDEQAELGEIVQLPNIEGSFDFDSAESHNELNIPIHDDLFDGWIYPPVVQDFVAEFPEHILAAESLIPGDFEASSVWD
Disordered region (IsUnstruct)
***************************************************************VYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIKGDSAVLNFPELVEVLPRPVSLLPRDIQT***********************************VQLPNIEGSFDF*****HNELNIPIHDDLFDGWIYPPVVQDFVAEFPEHILAAESLIPG*********
Disordered Region (DISOPRED)
*****************************************************************RGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIKGDSAVLNFPELVEVLP****************************************************************HNELNIPIHDDLFDGWIYPPVVQDFVAEFPEHILAAESLIPGDFEASSVWD
Disordered Region (DISEMBL)
************************************************************KHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIKGDSAVLNFPELVEVLPRPVSLLPRDIQTAATKAASMIIDP****************QAELGEIVQLPNIEGSFDFDSAESHNELNIPIHDDLFDGWIYPPVVQDFVAEFPEHILAAESLIPGDFEASSVWD
Disordered Region (DISPRO)
***********************************************************TKHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIKGDSAVLNFPELVEVLPRPVSLLPRDIQTAATKAAS************************************SFDFDSAESHNELNIPIHDDLFDGWIYPPVVQDFVAEFPEHILAAESLIPGDFEASSVWD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSSELSNISSEEAESTSTNSSTNDSLSQQRSRSDTGCRSENHPGSSRPKRKRESESGTKHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIKGDSAVLNFPELVEVLPRPVSLLPRDIQTAATKAASMIIDPSSSTCDEVSAQPQQDEQAELGEIVQLPNIEGSFDFDSAESHNELNIPIHDDLFDGWIYPPVVQDFVAEFPEHILAAESLIPGDFEASSVWD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	243	2.2.26 [Sep-21-2011]
Q9LYD3	236	Dehydration-responsive el	yes	no	0.654	0.673	0.582	2e-46
Q9LU18	236	Ethylene-responsive trans	no	no	0.641	0.661	0.568	4e-41
Q39127	218	Ethylene-responsive trans	no	no	0.707	0.788	0.525	4e-40
Q9M080	221	Ethylene-responsive trans	no	no	0.432	0.475	0.723	2e-39
Q8LBQ7	295	Ethylene-responsive trans	no	no	0.497	0.410	0.619	4e-36
Q52QU1	225	Ethylene-responsive trans	no	no	0.522	0.564	0.528	2e-33
Q9SUK8	179	Ethylene-responsive trans	no	no	0.366	0.497	0.752	1e-32
Q9M210	256	Ethylene-responsive trans	no	no	0.395	0.375	0.696	6e-32
Q9ZQP3	194	Ethylene-responsive trans	no	no	0.329	0.412	0.787	6e-31
Q1ECI2	192	Ethylene-responsive trans	no	no	0.358	0.453	0.701	9e-30

>sp|Q9LYD3|DREB3_ARATH Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1

 Score =  185 bits (470), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 106/182 (58%), Positives = 122/182 (67%), Gaps = 23/182 (12%)

Query: 48  SRPKRKRESESGTKHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVA 107
           S  K KR  +SG KHPVYRGVRMR+WGKWVSEIREPRKKSRIWLGTF TPEMAARAHDVA
Sbjct: 35  SEKKTKRGRDSG-KHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVA 93

Query: 108 ALSIKGDSAVLNFPELVEVLPRPVSLLPRDIQTAATKAASMIIDPSSSTCDEVSAQPQ-- 165
           ALSIKG +A+LNFPEL +  PRPVSL PRDIQTAA KAA M  +P++S     S+     
Sbjct: 94  ALSIKGTAAILNFPELADSFPRPVSLSPRDIQTAALKAAHM--EPTTSFSSSTSSSSSLS 151

Query: 166 ---------------QDEQAELGEIVQLPNIEGSFDFDSAESHNELNIPIHDDLFDGWIY 210
                          + E  ELGEIV+LP++  S+D DSA   NE    +  D  D  +Y
Sbjct: 152 STSSLESLVLVMDLSRTESEELGEIVELPSLGASYDVDSANLGNEF---VFYDSVDYCLY 208

Query: 211 PP 212
           PP
Sbjct: 209 PP 210

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LU18|ERF36_ARATH Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana GN=ERF036 PE=2 SV=2

 Score =  168 bits (425), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 100/176 (56%), Positives = 125/176 (71%), Gaps = 20/176 (11%)

Query: 61  KHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIKGDSAVLNF 120
           +HPVYRGVRMRSWGKWVSEIR+PRKK+RIWLGTF T +MAARAHDVAAL+IKG SAVLNF
Sbjct: 57  QHPVYRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHDVAALTIKGSSAVLNF 116

Query: 121 PELVEVLPRPVSLLPRDIQTAATKAASMIID------------PSSSTCDEVSAQPQQDE 168
           PEL  + PRP S  P DIQTAA +AA+M+++            P SS    V+A+ + +E
Sbjct: 117 PELASLFPRPASSSPHDIQTAAAEAAAMVVEEKLLEKDEAPEAPPSSESSYVAAESEDEE 176

Query: 169 QAELGEIVQLPNI-EGSFDFDSAESHNELNIPIHDDLFDGWIYPPVVQDFVAEFPE 223
           + E  +IV+LPNI EGS+D +S  S  +L    + + FD W+YPPV+ DF  E  E
Sbjct: 177 RLE--KIVELPNIEEGSYD-ESVTSRADL---AYSEPFDCWVYPPVM-DFYEEISE 225

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39127|TINY_ARATH Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE=2 SV=1

 Score =  164 bits (416), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 102/194 (52%), Positives = 119/194 (61%), Gaps = 22/194 (11%)

Query: 32  RSRSDTGCRSENHPGSSRPKRKRESESGTKHPVYRGVRMRSWGKWVSEIREPRKKSRIWL 91
           +S   +  R EN       K+K   +SG KHPVYRGVR R+WGKWVSEIREPRKKSRIWL
Sbjct: 8   KSWEASAVRQENE----EEKKKPVKDSG-KHPVYRGVRKRNWGKWVSEIREPRKKSRIWL 62

Query: 92  GTFRTPEMAARAHDVAALSIKGDSAVLNFPELVEVLPRPVSLLPRDIQTAATKAASMIID 151
           GTF +PEMAARAHDVAALSIKG SA+LNFP+L    PRP SL PRDIQ AA KAA M   
Sbjct: 63  GTFPSPEMAARAHDVAALSIKGASAILNFPDLAGSFPRPSSLSPRDIQVAALKAAHMETS 122

Query: 152 PSSSTCDEVSAQPQQDEQA-------------ELGEIVQLPNIEGSFDFDSAESHNELNI 198
            S S+   ++    Q   +             ELGEIV+LP++  S+D    +  NE   
Sbjct: 123 QSFSSSSSLTFSSSQSSSSLESLVSSSATGSEELGEIVELPSLGSSYD-GLTQLGNEF-- 179

Query: 199 PIHDDLFDGWIYPP 212
            I  D  D W YPP
Sbjct: 180 -IFSDSADLWPYPP 192

Putative transcriptional activator.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M080|ERF43_ARATH Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana GN=ERF043 PE=2 SV=1

 Score =  162 bits (410), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/105 (72%), Positives = 86/105 (81%)

Query: 54  RESESGTKHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIKG 113
           +E +   K PVYRGVRMRSWGKWVSEIREPRKKSRIWLGTF T EMA RAHDVAA+SIKG
Sbjct: 8   KEKKENNKQPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVAAMSIKG 67

Query: 114 DSAVLNFPELVEVLPRPVSLLPRDIQTAATKAASMIIDPSSSTCD 158
            SA+LNFPEL ++LPRPVSL PRD++ AATKAA M  D ++   D
Sbjct: 68  TSAILNFPELSKLLPRPVSLSPRDVRAAATKAALMDFDTTAFRSD 112

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBQ7|ERF34_ARATH Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2

 Score =  151 bits (382), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 78/126 (61%), Positives = 94/126 (74%), Gaps = 5/126 (3%)

Query: 52  RKRESESGTKHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSI 111
           ++R++  G KHP YRGVRMRSWGKWVSEIREPRKKSRIWLGT+ T EMAARAHDVAAL+I
Sbjct: 87  KRRKTNGGDKHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAI 146

Query: 112 KGDSAVLNFPELVEVLPRPVSLLPRDIQTAATKAA----SMIIDPSSSTCDE-VSAQPQQ 166
           KG +A LNFP+L   LPRPV+  P+DIQ AA+ AA      + D S+S   E V A+P +
Sbjct: 147 KGTTAYLNFPKLAGELPRPVTNSPKDIQAAASLAAVNWQDSVNDVSNSEVAEIVEAEPSR 206

Query: 167 DEQAEL 172
              A+L
Sbjct: 207 AVVAQL 212

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q52QU1|ERF42_ARATH Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1

 Score =  142 bits (359), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/157 (52%), Positives = 95/157 (60%), Gaps = 30/157 (19%)

Query: 64  VYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIKGDSAVLNFPEL 123
           VYRG RMRSWGKWVSEIREPRKKSRIWLGTF T EMAARAHDVAALSIKG SA+LNFPEL
Sbjct: 25  VYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFPEL 84

Query: 124 VEVLPRPVSLLPRDIQTAATKAASMIID-----------PSSSTCDEVSAQPQQDEQ--- 169
            + LPRPVSL  +DIQ AA +AA M              P  + CD    +         
Sbjct: 85  ADFLPRPVSLSQQDIQAAAAEAALMDFKTVPFHLQDDSTPLQTRCDTEKIEKWSSSSSSA 144

Query: 170 ----------------AELGEIVQLPNIEGSFDFDSA 190
                            ELG+IV+LP++E +  +D A
Sbjct: 145 SSSSSSSSSSSSSMLSGELGDIVELPSLENNVKYDCA 181

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUK8|ERF39_ARATH Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1

 Score =  139 bits (351), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/89 (75%), Positives = 72/89 (80%)

Query: 51  KRKRESESGTKHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALS 110
           K K E +  +K P +RGVRMR WGKWVSEIREPRKKSRIWLGTF TPEMAARAHDVAAL+
Sbjct: 26  KTKNEQKGVSKQPNFRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALA 85

Query: 111 IKGDSAVLNFPELVEVLPRPVSLLPRDIQ 139
           IKG SA LNFPEL   LPRP S  P+DIQ
Sbjct: 86  IKGGSAHLNFPELAYHLPRPASADPKDIQ 114

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M210|ERF35_ARATH Ethylene-responsive transcription factor ERF035 OS=Arabidopsis thaliana GN=ERF035 PE=2 SV=1

 Score =  137 bits (345), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 69/99 (69%), Positives = 76/99 (76%), Gaps = 3/99 (3%)

Query: 42  ENHPGSSRPKRKRESESGTKHPV-YRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMA 100
           +N  G  R  RK       K+P  YRGVRMRSWGKWVSEIREPRKKSRIWLGT+ T EMA
Sbjct: 49  DNDSGGKR--RKSNVSDDNKNPTSYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMA 106

Query: 101 ARAHDVAALSIKGDSAVLNFPELVEVLPRPVSLLPRDIQ 139
           ARAHDVAAL+IKG+S  LNFPEL  +LPRPVS  P+DIQ
Sbjct: 107 ARAHDVAALAIKGNSGFLNFPELSGLLPRPVSCSPKDIQ 145

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQP3|ERF38_ARATH Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana GN=ERF038 PE=2 SV=1

 Score =  134 bits (337), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 63/80 (78%), Positives = 68/80 (85%)

Query: 60  TKHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIKGDSAVLN 119
           +KHP +RGVRMR WGKWVSEIREP+KKSRIWLGTF T EMAARAHDVAAL+IKG SA LN
Sbjct: 40  SKHPNFRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAHLN 99

Query: 120 FPELVEVLPRPVSLLPRDIQ 139
           FPEL   LPRP S  P+DIQ
Sbjct: 100 FPELAYHLPRPASADPKDIQ 119

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1ECI2|ERF23_ARATH Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana GN=ERF023 PE=2 SV=1

 Score =  130 bits (327), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 61/87 (70%), Positives = 68/87 (78%)

Query: 53  KRESESGTKHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIK 112
           K  S S T+HPVY GVR R WGKWVSEIREPRKKSRIWLG+F  PEMAA+A+DVAA  +K
Sbjct: 33  KETSSSTTRHPVYHGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAFCLK 92

Query: 113 GDSAVLNFPELVEVLPRPVSLLPRDIQ 139
           G  A LNFPE +E LPRP +  PRDIQ
Sbjct: 93  GRKAQLNFPEEIEDLPRPSTCTPRDIQ 119

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
356522248	207	PREDICTED: dehydration-responsive elemen	0.777	0.913	0.511	1e-48
225429938	241	PREDICTED: dehydration-responsive elemen	0.802	0.809	0.566	4e-48
297811277	236	hypothetical protein ARALYDRAFT_487996 [	0.786	0.809	0.538	2e-47
224054390	233	AP2/ERF domain-containing transcription	0.761	0.793	0.570	4e-47
292668895	241	AP2 domain class transcription factor [M	0.646	0.651	0.653	5e-47
292668973	243	AP2 domain class transcription factor [M	0.646	0.646	0.632	3e-46
255549882	241	Transcriptional factor TINY, putative [R	0.748	0.755	0.548	6e-46
356526095	228	PREDICTED: dehydration-responsive elemen	0.777	0.828	0.517	9e-46
224070951	231	AP2/ERF domain-containing transcription	0.679	0.714	0.555	1e-45
15239113	236	dehydration-responsive element-binding p	0.654	0.673	0.582	1e-44

>gi|356522248|ref|XP_003529759.1| PREDICTED: dehydration-responsive element-binding protein 3-like [Glycine max]

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 109/213 (51%), Positives = 139/213 (65%), Gaps = 24/213 (11%)

Query: 37  TGCRSENHPGSSRPKRKRESESGTKHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRT 96
           +G R++    S RP+        +KHPVY GVR R+WGKWVSEIREPRKKSRIWLGTF T
Sbjct: 13  SGPRAQAQKQSKRPR------DCSKHPVYHGVRKRNWGKWVSEIREPRKKSRIWLGTFST 66

Query: 97  PEMAARAHDVAALSIKGDSAVLNFPELVEVLPRPVSLLPRDIQTAATKAASMI-IDPSSS 155
           PEMAARAHDVAAL+IKG SA+LNFPE+ ++LPRPV+  PRDIQTAAT AASM+  DP + 
Sbjct: 67  PEMAARAHDVAALTIKGQSAILNFPEIADLLPRPVTCSPRDIQTAATAAASMVKFDPVTQ 126

Query: 156 TCDEVSAQPQQDEQAELGEIVQLPNIEGSFDFDSAESHNELNIPIHDDLFDGWIYPPVVQ 215
           + D      +  E +EL EIV+LPNIE S    S +S  E    +  D+ D W++PP+  
Sbjct: 127 SSDS-----ETPESSELSEIVELPNIEDS----SVDSTPEF---VLVDVVDSWVFPPMGM 174

Query: 216 -----DFVAEFPEHILAAESLIPGDFEASSVWD 243
                +F A F + +   +S I  + E   +WD
Sbjct: 175 GSEGIEFCAAFSDELFPQQSFIGSEIEILPIWD 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429938|ref|XP_002283864.1| PREDICTED: dehydration-responsive element-binding protein 3-like [Vitis vinifera]

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 123/217 (56%), Positives = 145/217 (66%), Gaps = 22/217 (10%)

Query: 42  ENHPGSSRP----KRKRESESGTKHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTP 97
           ++ P SS+P    K+ +     +KHPVYRGVRMR+WGKWVSEIREPRKKSRIWLGTF TP
Sbjct: 30  QSRPNSSKPEPESKKMKRIRDSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTP 89

Query: 98  EMAARAHDVAALSIKGDSAVLNFPELVEVLPRPVSLLPRDIQTAATKAASM-------II 150
           EMAARAHDVAALSIKG+SA+LNFP+L   LPRPVSL PRD+Q AA KAA+M         
Sbjct: 90  EMAARAHDVAALSIKGNSAILNFPQLAASLPRPVSLAPRDVQAAAAKAAAMDKFDSPSSS 149

Query: 151 DPSSSTCDEVSAQPQQDEQAELGEIVQLPNIEGSFDFDSAESHNELNIPIHDDLFDGWIY 210
             SSS    VS+        EL EIV+LPN++ S  FDS ES  +    + DD  DGW+Y
Sbjct: 150 SSSSSLSSLVSSIDLSTASDELSEIVELPNLDPS--FDSPESKTDF---VFDDSADGWLY 204

Query: 211 PP----VVQDFVAEFPEHILAAESLIPGDFEASSVWD 243
           PP     V+D    F E +L  ESLIPG FEA  +WD
Sbjct: 205 PPPWLQSVED-CGYFSEQLLVPESLIPGSFEA-FLWD 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811277|ref|XP_002873522.1| hypothetical protein ARALYDRAFT_487996 [Arabidopsis lyrata subsp. lyrata] gi|297319359|gb|EFH49781.1| hypothetical protein ARALYDRAFT_487996 [Arabidopsis lyrata subsp. lyrata]

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/223 (53%), Positives = 144/223 (64%), Gaps = 32/223 (14%)

Query: 6   ELSNISSEEAESTSTNSSTNDSLSQQRSRSDTGCRSENHPGSSRPKRKRESESGTKHPVY 65
           E  N+ SE        +S +DS+SQ +S+++   +SEN       K KR  +SG KHPVY
Sbjct: 4   EYYNLRSERVTQHLVPNSESDSVSQ-KSKAE---QSENK------KTKRVIDSG-KHPVY 52

Query: 66  RGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIKGDSAVLNFPELVE 125
           RGVRMR+WGKWVSEIREPRKKSRIWLGTF TPEMAARAHDVAALSIKG SA+LNFPEL +
Sbjct: 53  RGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGTSAILNFPELAD 112

Query: 126 VLPRPVSLLPRDIQTAATKAASMIIDPSSSTCDEVSAQPQ----------------QDEQ 169
             PRPVSL PRDIQTAA KAA M  +P++S     S+                   + E 
Sbjct: 113 SFPRPVSLSPRDIQTAALKAAHM--EPTTSFSSSTSSSSSSSTSSLESLVLVMDLSRTES 170

Query: 170 AELGEIVQLPNIEGSFDFDSAESHNELNIPIHDDLFDGWIYPP 212
            ELGEIV+LP++  S+DFDSA   NE    +  D  D  +YPP
Sbjct: 171 EELGEIVELPSLGASYDFDSANLGNEF---VFSDSVDYCLYPP 210

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054390|ref|XP_002298236.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|134038600|gb|ABO48368.1| TINY-like protein 1 [Populus trichocarpa] gi|222845494|gb|EEE83041.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 113/198 (57%), Positives = 136/198 (68%), Gaps = 13/198 (6%)

Query: 51  KRKRESESGTKHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALS 110
           ++ R++   +KH VYRGVR R+WGKWVSEIR+PRKKSRIWLGTF TPEMAARAHDVAALS
Sbjct: 41  QKSRKARDCSKHAVYRGVRRRAWGKWVSEIRQPRKKSRIWLGTFPTPEMAARAHDVAALS 100

Query: 111 IKGDSAVLNFPELVEVLPRPVSLLPRDIQTAATKAASMI-------IDPSSSTCDEVSAQ 163
           IKGDSA+LNFPEL   LPRPVSL+PRDIQ AA KAA+M+           SS+   VS  
Sbjct: 101 IKGDSAILNFPELAASLPRPVSLMPRDIQAAAAKAAAMVDFNSSSPPSSLSSSSVSVSED 160

Query: 164 PQQDEQAELGEIVQLPNIEGSFDFDSAESHNELNIPIHDDLFDGWIYPPVVQDFVAEFPE 223
             + E+  L EIV+LPNIEGSFD    +S  E  +    D  D W+YPP+  D   EF +
Sbjct: 161 VAESEEEYLSEIVELPNIEGSFD-SPDQSQTEFML---FDSVDRWVYPPL--DLSGEFCD 214

Query: 224 HILAAESLIPGDFEASSV 241
            +L  ESLIP +F  S +
Sbjct: 215 QLLGLESLIPSNFGGSEL 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292668895|gb|ADE41102.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 113/173 (65%), Positives = 133/173 (76%), Gaps = 16/173 (9%)

Query: 51  KRKRESESG---TKHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVA 107
           KRKR+ +S    +KHPVYRGVR R+WGKWVSEIREPRKKSRIWLGTF TPEMAARAHDVA
Sbjct: 52  KRKRDDDSNNNSSKHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVA 111

Query: 108 ALSIKGDSAVLNFPELVEVLPRPVSLLPRDIQTAATKAASMI---------IDPSSSTCD 158
           ALSIKG+SA+LNFPEL E+LPRP SL P+DIQ AATKAA+M+         +  SSS+  
Sbjct: 112 ALSIKGNSAILNFPELTELLPRPASLTPQDIQAAATKAAAMVNLNSTTSSSLSSSSSSSS 171

Query: 159 EVSAQPQQDEQAELGEIVQLPNIEGSFDFDSAESHNELNIPIHDDLFDGWIYP 211
            + +Q +  +  ELGEIV+LPNIEGS  FDS ES NE  I ++D L DGW+YP
Sbjct: 172 VLLSQSKGSDSEELGEIVELPNIEGS--FDSPESRNEF-ILVNDSL-DGWVYP 220

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292668973|gb|ADE41141.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 110/174 (63%), Positives = 130/174 (74%), Gaps = 17/174 (9%)

Query: 51  KRKRESESG---TKHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVA 107
           KRKR  +S    +KHPVYRGVRMR+WGKWVSEIREPRKKSRIWLGTF TPEMAARAHDVA
Sbjct: 53  KRKRHDDSNVNSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVA 112

Query: 108 ALSIKGDSAVLNFPELVEVLPRPVSLLPRDIQTAATKAASMI----------IDPSSSTC 157
           ALSIKG SA+LNFPEL E+LPRP SL P+D+Q AA KAA+M+          +  SSS+ 
Sbjct: 113 ALSIKGSSAILNFPELTELLPRPASLKPQDVQAAAIKAAAMVHLNSTTSSSSLSSSSSSS 172

Query: 158 DEVSAQPQQDEQAELGEIVQLPNIEGSFDFDSAESHNELNIPIHDDLFDGWIYP 211
             + +Q +  +  ELGEIV+LPNIEGS  F+S ES NE  I ++D L D W+YP
Sbjct: 173 SLLLSQSEGSDSEELGEIVELPNIEGS--FESPESRNEF-ILVNDSL-DAWVYP 222

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549882|ref|XP_002515992.1| Transcriptional factor TINY, putative [Ricinus communis] gi|223544897|gb|EEF46412.1| Transcriptional factor TINY, putative [Ricinus communis]

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 118/215 (54%), Positives = 137/215 (63%), Gaps = 33/215 (15%)

Query: 51  KRKRESESGTKHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALS 110
           KR R+    +KHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTF T EMAARAHDVAA+S
Sbjct: 38  KRARDC---SKHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAAMS 94

Query: 111 IKGDSAVLNFPELVEVLPRPVSLLPRDIQTAATKAASMI--------------------- 149
           IKG+SA+LNFP+L++ LPRPVSL+PRDIQ AA KAASM+                     
Sbjct: 95  IKGNSAILNFPQLIDSLPRPVSLMPRDIQVAAAKAASMVEFDSSSSSPSSSSLSESSSSL 154

Query: 150 IDPSSSTCDEVSAQPQQDEQAELGEIVQLPNIEGSFDFDSAESHNELNIPIHDDLFDGWI 209
              S+S+   VS      E  EL EIV+LPNIEGSF+     S       I  D  DGW+
Sbjct: 155 STSSTSSSSSVSVSEDVSESEELSEIVELPNIEGSFELAPLSSEF-----ILIDSVDGWV 209

Query: 210 YPPVVQD-FVAEFPEHILAAESLIPGDFEASSVWD 243
           YPP  QD    EF + +   ESLI  +F  +S WD
Sbjct: 210 YPP--QDNICGEFSDQLSGLESLISSNF-GTSGWD 241

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526095|ref|XP_003531655.1| PREDICTED: dehydration-responsive element-binding protein 3-like [Glycine max]

 Score =  189 bits (480), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 106/205 (51%), Positives = 137/205 (66%), Gaps = 16/205 (7%)

Query: 45  PGSSRPKRKRESESGTKHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAH 104
           P +   K+ +     +KHPVY GVR R+WGKWVSEIREPRKKSRIWLGTF TPEMAARAH
Sbjct: 34  PKAQAQKQSKRPRDCSKHPVYHGVRKRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAH 93

Query: 105 DVAALSIKGDSAVLNFPELVEVLPRPVSLLPRDIQTAATKAASMI-IDPSSSTCDEVSAQ 163
           DVAAL+IKG+SA+LNFPE+ ++LPRPV+  PRDIQ AAT AASM+  DP + + D     
Sbjct: 94  DVAALTIKGESAILNFPEIADLLPRPVTCAPRDIQAAATAAASMVKFDPVTQSSDS---- 149

Query: 164 PQQDEQAELGEIVQLPNIEGSFDFDSAESHNELNIPIHDDLFDGWIYPPVVQ-----DFV 218
            +  E +EL EIV+LPNIE S  FDS +S  E    +  D+ DGW++PP+       +  
Sbjct: 150 -ETPESSELSEIVELPNIEDS-SFDSVDSRPEF---VLVDVVDGWVFPPMGMGSEGIEIC 204

Query: 219 AEFPEHILAAESLIPGDFEASSVWD 243
           A F + +   +S +  + E   +WD
Sbjct: 205 AAFSDELFPQQSFV-DEIEILPIWD 228

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070951|ref|XP_002303301.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222840733|gb|EEE78280.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 110/198 (55%), Positives = 130/198 (65%), Gaps = 33/198 (16%)

Query: 60  TKHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIKGDSAVLN 119
           +KHPVYRGVR R+WGKWVSEIR+PRKKSRIWLGTF TPEMAARAHDVAAL IKGDSA+LN
Sbjct: 46  SKHPVYRGVRRRAWGKWVSEIRQPRKKSRIWLGTFPTPEMAARAHDVAALCIKGDSAILN 105

Query: 120 FPELVEVLPRPVSLLPRDIQTAATKAASMI-------IDPSSSTCDEVSAQPQQDEQAEL 172
           FPEL + LPRPVS++PRDIQ+AA KAA+M+           SS+   VS    + E+  L
Sbjct: 106 FPELADSLPRPVSVMPRDIQSAAAKAAAMVEFNSPSPSSSLSSSSVTVSEDVAESEEEYL 165

Query: 173 GEIVQLPNIEGSFD-----------FDSAESHNELNIPIHDDLFDGWIYPPVVQDFVAEF 221
            EIV+LPNIEGSFD           FDS + H             GW+YPP+  D   EF
Sbjct: 166 SEIVELPNIEGSFDSPDQSRIEFMLFDSVDGH-------------GWVYPPL--DLCGEF 210

Query: 222 PEHILAAESLIPGDFEAS 239
            + +L  ESLI  +   S
Sbjct: 211 SDQLLGLESLISSNLAGS 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239113|ref|NP_196720.1| dehydration-responsive element-binding protein 3 [Arabidopsis thaliana] gi|75264381|sp|Q9LYD3.1|DREB3_ARATH RecName: Full=Dehydration-responsive element-binding protein 3; AltName: Full=Protein TINY 2 gi|7573416|emb|CAB87719.1| transcription factor like protein [Arabidopsis thaliana] gi|48479294|gb|AAT44918.1| putative AP2/EREBP transcription factor [Arabidopsis thaliana] gi|61104875|gb|AAX38232.1| DREB3 [Arabidopsis thaliana] gi|332004315|gb|AED91698.1| dehydration-responsive element-binding protein 3 [Arabidopsis thaliana]

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/182 (58%), Positives = 122/182 (67%), Gaps = 23/182 (12%)

Query: 48  SRPKRKRESESGTKHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVA 107
           S  K KR  +SG KHPVYRGVRMR+WGKWVSEIREPRKKSRIWLGTF TPEMAARAHDVA
Sbjct: 35  SEKKTKRGRDSG-KHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVA 93

Query: 108 ALSIKGDSAVLNFPELVEVLPRPVSLLPRDIQTAATKAASMIIDPSSSTCDEVSAQPQ-- 165
           ALSIKG +A+LNFPEL +  PRPVSL PRDIQTAA KAA M  +P++S     S+     
Sbjct: 94  ALSIKGTAAILNFPELADSFPRPVSLSPRDIQTAALKAAHM--EPTTSFSSSTSSSSSLS 151

Query: 166 ---------------QDEQAELGEIVQLPNIEGSFDFDSAESHNELNIPIHDDLFDGWIY 210
                          + E  ELGEIV+LP++  S+D DSA   NE    +  D  D  +Y
Sbjct: 152 STSSLESLVLVMDLSRTESEELGEIVELPSLGASYDVDSANLGNEF---VFYDSVDYCLY 208

Query: 211 PP 212
           PP
Sbjct: 209 PP 210

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
TAIR|locus:2094897	236	AT3G16280 [Arabidopsis thalian	0.757	0.779	0.504	1.9e-44
TAIR|locus:2144296	236	TINY2 "AT5G11590" [Arabidopsis	0.604	0.622	0.609	2.8e-43
TAIR|locus:2145249	218	tny "TINY" [Arabidopsis thalia	0.609	0.678	0.569	1.8e-39
TAIR|locus:2134128	221	AT4G32800 [Arabidopsis thalian	0.691	0.760	0.525	3e-37
TAIR|locus:2195985	244	AT1G77200 [Arabidopsis thalian	0.386	0.385	0.776	1.1e-34
TAIR|locus:2055007	295	AT2G44940 [Arabidopsis thalian	0.460	0.379	0.649	5.2e-33
TAIR|locus:2043495	225	ESE2 "ethylene and salt induci	0.349	0.377	0.823	8.5e-33
TAIR|locus:2129111	179	AT4G16750 [Arabidopsis thalian	0.448	0.608	0.660	1.1e-32
TAIR|locus:2103301	256	AT3G60490 [Arabidopsis thalian	0.353	0.335	0.804	1.8e-32
TAIR|locus:2058764	194	ERF38 "ERF family protein 38"	0.399	0.5	0.714	9.8e-32

TAIR|locus:2094897 AT3G16280 [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 103/204 (50%), Positives = 130/204 (63%)

Query:    33 SRSDTGCRSENHXXXXXXXXXXXXXXXTKHPVYRGVRMRSWGKWVSEIREPRKKSRIWLG 92
             S  +   R+ N                 +HPVYRGVRMRSWGKWVSEIR+PRKK+RIWLG
Sbjct:    29 SEEEAPPRNNNTRKRRRDSSSASSSSSMQHPVYRGVRMRSWGKWVSEIRQPRKKTRIWLG 88

Query:    93 TFRTPEMAARAHDVAALSIKGDSAVLNFPELVEVLPRPVSLLPRDIQTAATKAASMIID- 151
             TF T +MAARAHDVAAL+IKG SAVLNFPEL  + PRP S  P DIQTAA +AA+M+++ 
Sbjct:    89 TFVTADMAARAHDVAALTIKGSSAVLNFPELASLFPRPASSSPHDIQTAAAEAAAMVVEE 148

Query:   152 -----------PSSSTCDEVSAQPQQDEQAELGEIVQLPNIE-GSFDFDSAESHNELNIP 199
                        P SS    V+A+ + +E+ E  +IV+LPNIE GS+D +S  S  +L   
Sbjct:   149 KLLEKDEAPEAPPSSESSYVAAESEDEERLE--KIVELPNIEEGSYD-ESVTSRADL--- 202

Query:   200 IHDDLFDGWIYPPVVQDFVAEFPE 223
              + + FD W+YPPV+ DF  E  E
Sbjct:   203 AYSEPFDCWVYPPVM-DFYEEISE 225

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2144296 TINY2 "AT5G11590" [Arabidopsis thaliana (taxid:3702)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 103/169 (60%), Positives = 115/169 (68%)

Query:    61 KHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIKGDSAVLNF 120
             KHPVYRGVRMR+WGKWVSEIREPRKKSRIWLGTF TPEMAARAHDVAALSIKG +A+LNF
Sbjct:    47 KHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGTAAILNF 106

Query:   121 PELVEVLPRPVSLLPRDIQTAATKAASMIIDP----SSSTCDEVSAQP------------ 164
             PEL +  PRPVSL PRDIQTAA KAA M  +P    SSST    S               
Sbjct:   107 PELADSFPRPVSLSPRDIQTAALKAAHM--EPTTSFSSSTSSSSSLSSTSSLESLVLVMD 164

Query:   165 -QQDEQAELGEIVQLPNIEGSFDFDSAESHNELNIPIHDDLFDGWIYPP 212
               + E  ELGEIV+LP++  S+D DSA   NE    +  D  D  +YPP
Sbjct:   165 LSRTESEELGEIVELPSLGASYDVDSANLGNEF---VFYDSVDYCLYPP 210

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2145249 tny "TINY" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 94/165 (56%), Positives = 107/165 (64%)

Query:    61 KHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIKGDSAVLNF 120
             KHPVYRGVR R+WGKWVSEIREPRKKSRIWLGTF +PEMAARAHDVAALSIKG SA+LNF
Sbjct:    32 KHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGASAILNF 91

Query:   121 PELVEVLPRPVSLLPRDIQTAATKAASMIIDPSSSTCDEVSAQPQQDEQA---------- 170
             P+L    PRP SL PRDIQ AA KAA M    S S+   ++    Q   +          
Sbjct:    92 PDLAGSFPRPSSLSPRDIQVAALKAAHMETSQSFSSSSSLTFSSSQSSSSLESLVSSSAT 151

Query:   171 ---ELGEIVQLPNIEGSFDFDSAESHNELNIPIHDDLFDGWIYPP 212
                ELGEIV+LP++  S+D    +  NE    I  D  D W YPP
Sbjct:   152 GSEELGEIVELPSLGSSYD-GLTQLGNEF---IFSDSADLWPYPP 192

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009825 "multidimensional cell growth" evidence=IMP

TAIR|locus:2134128 AT4G32800 [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 92/175 (52%), Positives = 114/175 (65%)

Query:    61 KHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIKGDSAVLNF 120
             K PVYRGVRMRSWGKWVSEIREPRKKSRIWLGTF T EMA RAHDVAA+SIKG SA+LNF
Sbjct:    15 KQPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVAAMSIKGTSAILNF 74

Query:   121 PELVEVLPRPVSLLPRDIQTAATKAASMIIDPSSSTCD-EVSAQPQQDEQAELGEIVQLP 179
             PEL ++LPRPVSL PRD++ AATKAA M  D ++   D E S     ++ +E  E  +  
Sbjct:    75 PELSKLLPRPVSLSPRDVRAAATKAALMDFDTTAFRSDTETSETTTSNKMSESSESNETV 134

Query:   180 NIEGSFDFDSAESHNELNIPIHDDLFDGWIYPPVVQDFVAEFPEHIL--AAESLI 232
             +   S  + S  S  E  +   DDL D  +  P +   + E  E ++  + E L+
Sbjct:   135 SFSSS-SWSSVTSIEESTVS--DDL-DEIVKLPSLGTSLNESNEFVIFDSLEDLV 185

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2195985 AT1G77200 [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 73/94 (77%), Positives = 78/94 (82%)

Query:    63 PVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIKGDSAVLNFPE 122
             P YRGVRMR+WGKWVSEIREPRKKSRIWLGTF TPEMAARAHD AAL+IKG SAVLNFPE
Sbjct:    41 PGYRGVRMRTWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDAAALTIKGTSAVLNFPE 100

Query:   123 LVEVLPRPVSLLPRDIQTAATKAASMIIDPSSST 156
             L   LPRP S  PRD+Q AA  AA+M   PSSS+
Sbjct:   101 LATYLPRPASSSPRDVQAAAAVAAAMDFSPSSSS 134

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2055007 AT2G44940 [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 76/117 (64%), Positives = 88/117 (75%)

Query:    61 KHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIKGDSAVLNF 120
             KHP YRGVRMRSWGKWVSEIREPRKKSRIWLGT+ T EMAARAHDVAAL+IKG +A LNF
Sbjct:    96 KHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGTTAYLNF 155

Query:   121 PELVEVLPRPVSLLPRDIQTAATKAA----SMIIDPSSSTCDE-VSAQPQQDEQAEL 172
             P+L   LPRPV+  P+DIQ AA+ AA      + D S+S   E V A+P +   A+L
Sbjct:   156 PKLAGELPRPVTNSPKDIQAAASLAAVNWQDSVNDVSNSEVAEIVEAEPSRAVVAQL 212

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2043495 ESE2 "ethylene and salt inducible 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 70/85 (82%), Positives = 74/85 (87%)

Query:    64 VYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIKGDSAVLNFPEL 123
             VYRG RMRSWGKWVSEIREPRKKSRIWLGTF T EMAARAHDVAALSIKG SA+LNFPEL
Sbjct:    25 VYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFPEL 84

Query:   124 VEVLPRPVSLLPRDIQTAATKAASM 148
              + LPRPVSL  +DIQ AA +AA M
Sbjct:    85 ADFLPRPVSLSQQDIQAAAAEAALM 109

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

TAIR|locus:2129111 AT4G16750 [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 72/109 (66%), Positives = 81/109 (74%)

Query:    60 TKHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIKGDSAVLN 119
             +K P +RGVRMR WGKWVSEIREPRKKSRIWLGTF TPEMAARAHDVAAL+IKG SA LN
Sbjct:    35 SKQPNFRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALAIKGGSAHLN 94

Query:   120 FPELVEVLPRPVSLLPRDIQTAATKAASMIIDPSSSTCDEVSAQPQQDE 168
             FPEL   LPRP S  P+DIQ AA  AA++      S    V++ P  D+
Sbjct:    95 FPELAYHLPRPASADPKDIQEAAAAAAAVDWKAPESPSSTVTSSPVADD 143

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2103301 AT3G60490 [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 70/87 (80%), Positives = 76/87 (87%)

Query:    61 KHPV-YRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIKGDSAVLN 119
             K+P  YRGVRMRSWGKWVSEIREPRKKSRIWLGT+ T EMAARAHDVAAL+IKG+S  LN
Sbjct:    66 KNPTSYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGNSGFLN 125

Query:   120 FPELVEVLPRPVSLLPRDIQTAATKAA 146
             FPEL  +LPRPVS  P+DIQ AATKAA
Sbjct:   126 FPELSGLLPRPVSCSPKDIQAAATKAA 152

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2058764 ERF38 "ERF family protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 70/98 (71%), Positives = 77/98 (78%)

Query:    60 TKHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIKGDSAVLN 119
             +KHP +RGVRMR WGKWVSEIREP+KKSRIWLGTF T EMAARAHDVAAL+IKG SA LN
Sbjct:    40 SKHPNFRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAHLN 99

Query:   120 FPELVEVLPRPVSLLPRDIQTAATKAASMI-IDPSSST 156
             FPEL   LPRP S  P+DIQ AA  AA+ + ID    T
Sbjct:   100 FPELAYHLPRPASADPKDIQAAAAAAAAAVAIDMDVET 137

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0009834 "secondary cell wall biogenesis" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LYD3	DREB3_ARATH	No assigned EC number	0.5824	0.6543	0.6737	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.6__1130__AT5G11590.1 annotation not avaliable (236 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	243
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	3e-34
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	1e-31
pfam00847	53	pfam00847, AP2, AP2 domain	4e-14

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  117 bits (295), Expect = 3e-34
 Identities = 38/61 (62%), Positives = 44/61 (72%)

Query: 65  YRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIKGDSAVLNFPELV 124
           YRGVR R WGKWV+EIR+P K  R+WLGTF T E AARA+D AA   +G SA LNFP  +
Sbjct: 2   YRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSL 61

Query: 125 E 125
            
Sbjct: 62  Y 62

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  110 bits (276), Expect = 1e-31
 Identities = 40/59 (67%), Positives = 46/59 (77%)

Query: 65  YRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIKGDSAVLNFPEL 123
           YRGVR R WGKWV+EIR+P    RIWLGTF T E AARA+D AAL ++G SAVLNFP+ 
Sbjct: 3   YRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 64.6 bits (158), Expect = 4e-14
 Identities = 28/54 (51%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 63  PVYRGVRMR-SWGKWVSEIREP--RKKSRIWLGTFRTPEMAARAHDVAALSIKG 113
             Y+GVR    WG+WV+EIR+P  +KK R  LGTF T E AARA   A L ++G
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	243
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.85
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.83
PHA00280	121	putative NHN endonuclease	99.44
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.15
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	80.49

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.85  E-value=1.9e-21  Score=139.35  Aligned_cols=61  Identities=66%  Similarity=1.117  Sum_probs=57.7

Q ss_pred             CceeEeEECCCCcEEEEEeeCCCCeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 038538           63 PVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIKGDSAVLNFPEL  123 (243)
Q Consensus        63 s~yRGVr~r~~GKW~AeIr~~~~kkri~LGtF~T~EeAArAYD~Aa~~l~G~~a~lNFp~~  123 (243)
                      |+|+||+++++|||+|+|+.+..++++|||+|+|+||||+|||.|+++++|..+.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            5799999888899999999976699999999999999999999999999999999999975

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.83  E-value=1.7e-20  Score=136.01  Aligned_cols=62  Identities=61%  Similarity=1.049  Sum_probs=58.9

Q ss_pred             ceeEeEECCCCcEEEEEeeCCCCeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCcC
Q 038538           64 VYRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIKGDSAVLNFPELVE  125 (243)
Q Consensus        64 ~yRGVr~r~~GKW~AeIr~~~~kkri~LGtF~T~EeAArAYD~Aa~~l~G~~a~lNFp~~~~  125 (243)
                      +|+||+++++|||+|+|+++.+++++|||+|+|+||||+|||.|+++++|..+.+|||.+.+
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y   62 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLY   62 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccC
Confidence            59999988889999999999999999999999999999999999999999999999998754

>PHA00280 putative NHN endonuclease

Probab=99.44  E-value=9e-14  Score=113.70  Aligned_cols=55  Identities=11%  Similarity=0.131  Sum_probs=49.7

Q ss_pred             CCCCceeEeEEC-CCCcEEEEEeeCCCCeEEeecCCCCHHHHHHHHHHHHHHhcCCCCC
Q 038538           60 TKHPVYRGVRMR-SWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIKGDSAV  117 (243)
Q Consensus        60 ~~~s~yRGVr~r-~~GKW~AeIr~~~~kkri~LGtF~T~EeAArAYD~Aa~~l~G~~a~  117 (243)
                      .++|+|+||.++ ..|||+|+|+.  .||+++||.|+++|+|+.||+ ++.+|+|.+|.
T Consensus        64 ~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         64 SNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             CCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            367899999866 77999999999  999999999999999999997 77899999875

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.15  E-value=7.5e-11  Score=82.41  Aligned_cols=52  Identities=31%  Similarity=0.487  Sum_probs=45.2

Q ss_pred             CceeEeEEC-CCCcEEEEEeeCCC---CeEEeecCCCCHHHHHHHHHHHHHHhcCC
Q 038538           63 PVYRGVRMR-SWGKWVSEIREPRK---KSRIWLGTFRTPEMAARAHDVAALSIKGD  114 (243)
Q Consensus        63 s~yRGVr~r-~~GKW~AeIr~~~~---kkri~LGtF~T~EeAArAYD~Aa~~l~G~  114 (243)
                      |+|+||++. ..++|+|+|++...   +++++||.|+++++|++|++.++++++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            589999766 68999999999421   48999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=80.49  E-value=7.2  Score=26.24  Aligned_cols=38  Identities=16%  Similarity=0.250  Sum_probs=29.3

Q ss_pred             cEEEEEe--eC--CCCeEEeecCCCCHHHHHHHHHHHHHHhc
Q 038538           75 KWVSEIR--EP--RKKSRIWLGTFRTPEMAARAHDVAALSIK  112 (243)
Q Consensus        75 KW~AeIr--~~--~~kkri~LGtF~T~EeAArAYD~Aa~~l~  112 (243)
                      +|...|.  .+  ++.++++-+-|.|..||..+.......+.
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            5888883  43  34478899999999999999887766653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	243
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		2e-13
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		2e-13

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Query: 65  YRGVRMRSWGKWVSEIREPRKK-SRIWLGTFRTPEMAARAHDVAALSIKGDSAVLNFP 121
           YRGVR R WGK+ +EIR+P K  +R+WLGTF T E AA A+D AA  ++G  A+LNFP
Sbjct: 6   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 63

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Query: 65  YRGVRMRSWGKWVSEIREPRKK-SRIWLGTFRTPEMAARAHDVAALSIKGDSAVLNFP 121
           YRGVR R WGK+ +EIR+P K  +R+WLGTF T E AA A+D AA  ++G  A+LNFP
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	243
1gcc_A	63	Ethylene responsive element binding factor 1; tran	4e-30

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  105 bits (265), Expect = 4e-30
 Identities = 35/61 (57%), Positives = 44/61 (72%), Gaps = 1/61 (1%)

Query: 65  YRGVRMRSWGKWVSEIREPRKK-SRIWLGTFRTPEMAARAHDVAALSIKGDSAVLNFPEL 123
           YRGVR R WGK+ +EIR+P K  +R+WLGTF T E AA A+D AA  ++G  A+LNFP  
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62

Query: 124 V 124
           V
Sbjct: 63  V 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	243
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.92
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	89.54
3jtz_A	88	Integrase; four stranded beta-sheet, DNA binding p	82.34
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	80.71

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.92  E-value=4.3e-26  Score=165.36  Aligned_cols=60  Identities=57%  Similarity=0.971  Sum_probs=57.4

Q ss_pred             ceeEeEECCCCcEEEEEeeCCC-CeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 038538           64 VYRGVRMRSWGKWVSEIREPRK-KSRIWLGTFRTPEMAARAHDVAALSIKGDSAVLNFPEL  123 (243)
Q Consensus        64 ~yRGVr~r~~GKW~AeIr~~~~-kkri~LGtF~T~EeAArAYD~Aa~~l~G~~a~lNFp~~  123 (243)
                      +||||++|++|||+|+|++|.+ |++||||||+|+||||+|||.|+++++|..+++|||++
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            6999999999999999999975 79999999999999999999999999999999999986

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=89.54  E-value=0.21  Score=37.22  Aligned_cols=28  Identities=21%  Similarity=0.307  Sum_probs=21.7

Q ss_pred             CCCCceeEeEEC-CCCcEEEEEeeCCCCeEE
Q 038538           60 TKHPVYRGVRMR-SWGKWVSEIREPRKKSRI   89 (243)
Q Consensus        60 ~~~s~yRGVr~r-~~GKW~AeIr~~~~kkri   89 (243)
                      ..+|+|+||.+. +.+.|+|.-.+  +|++.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rr   31 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD--GASRR   31 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE--TTEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEec--CCeEe
Confidence            467899999766 77999999998  45443

>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A

Probab=82.34  E-value=2.9  Score=31.04  Aligned_cols=44  Identities=23%  Similarity=0.342  Sum_probs=32.5

Q ss_pred             eEECCCC--cEEEEEeeCCCCeEEeecCCC--CHHHHHHHHHHHHHHh
Q 038538           68 VRMRSWG--KWVSEIREPRKKSRIWLGTFR--TPEMAARAHDVAALSI  111 (243)
Q Consensus        68 Vr~r~~G--KW~AeIr~~~~kkri~LGtF~--T~EeAArAYD~Aa~~l  111 (243)
                      |+.+..|  .|+-+.+..++.+++-||.|+  |.++|....+.+...+
T Consensus        28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l   75 (88)
T 3jtz_A           28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML   75 (88)
T ss_dssp             EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence            4555544  499999987677788999998  4888887777665554

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=80.71  E-value=0.31  Score=40.04  Aligned_cols=39  Identities=5%  Similarity=-0.056  Sum_probs=29.2

Q ss_pred             eeEeEECCCCcEEEEEeeCCCCeEEeecCCCCHHHHHHHHHH
Q 038538           65 YRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDV  106 (243)
Q Consensus        65 yRGVr~r~~GKW~AeIr~~~~kkri~LGtF~T~EeAArAYD~  106 (243)
                      ++||.....++|.+.|..  . +.++||.|+|.+|||++|..
T Consensus       109 ~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~Gv  147 (174)
T 1u3e_M          109 SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELGL  147 (174)
T ss_dssp             HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHTC
T ss_pred             eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHCc
Confidence            456643334668899988  3 46789999999999999653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	243
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	1e-31

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  108 bits (272), Expect = 1e-31
 Identities = 35/61 (57%), Positives = 44/61 (72%), Gaps = 1/61 (1%)

Query: 65  YRGVRMRSWGKWVSEIREPRKK-SRIWLGTFRTPEMAARAHDVAALSIKGDSAVLNFPEL 123
           YRGVR R WGK+ +EIR+P K  +R+WLGTF T E AA A+D AA  ++G  A+LNFP  
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62

Query: 124 V 124
           V
Sbjct: 63  V 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	243
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.91

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=8.1e-26  Score=162.67  Aligned_cols=60  Identities=55%  Similarity=0.958  Sum_probs=56.0

Q ss_pred             ceeEeEECCCCcEEEEEeeCC-CCeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 038538           64 VYRGVRMRSWGKWVSEIREPR-KKSRIWLGTFRTPEMAARAHDVAALSIKGDSAVLNFPEL  123 (243)
Q Consensus        64 ~yRGVr~r~~GKW~AeIr~~~-~kkri~LGtF~T~EeAArAYD~Aa~~l~G~~a~lNFp~~  123 (243)
                      .||||++|++|||+|+|++|. ++++||||+|+|+||||+|||+|+++++|.++.+|||..
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            599999998999999999975 568999999999999999999999999999999999964