Citrus Sinensis ID: 038551

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360------
Protein Sequence
MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLKRLECAELKELPLDCNHGLEQKIIIKGQEHWWNELQWDDLSTQNAFLPCFESLY
Secondary Structure (PSIPRED)
cEEEcccccccccccEEEEccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccHHHHHccccccEEEcccccccccccHHHHccccccEEEccccccccccHHHHHcccccEEccccccccccccHHHHcccccccEEEccccccccccccccccccccHHHHHHHHccccccccccccccccHHHHHcccccccccccHHHHccccccccccccccccccccccEEEEEcccccEEEccccccccccHHccccccHHHHHcccccccccccccccccccccccccccccccEEEEcccccccccccccccccccEEEEEcHHHHHHcccccHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccccEEEEEccccccccccHHHHHHHHHHHHHcccHHcccccccccccEEEEEEccccccccHHHHHHcccEEEEEccccccHccccHHHHHHHcEEEEccccccHHHccHHHHHHHHHHHHcccccHcHcHccHHHHHccHccEEEEEEccccccccccccccccccHHHHHHHHHHHHHcEcEEEEccHHHHHHHHccccHHcHHHEEEEHHHcccccccEEEccHcHHcccEEEEEccccEEEEEEccccccEEEEEccccHcHcEEEEEcccHHHHEEcccHHHHHHcccccccHEEccccccccccccccccccccccEEEEEccHHHHHHcccccHHHHHHccccccccc
Coil and Loop (DISEMBL)
MTLRIASTINKEKENFLVLAGvglteapsigmwkETTRMSLMQNAIQNlteiptcprlrtlflpsnhlgtvsnnfFHSMASLRVLILSYNrslenlplgifnlvslqhldiswtgittLPIELKYLVNLKClnleytfrlsripqQVISDLKMLRALRMFECgfnveleadsilfgdsEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCrlgsistqclclrhlnnsnslSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMactcsqyqacprgltkfeehplkrlecaelkelpldcnhglEQKIIIKGQEHWWNElqwddlstqnaflpcfesly
Flexible Loop (DISEMBL)
mtlriastinkekenfLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYtfrlsripqQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLKRLECAELKELPLDCNHGLEQKIIIKGQEHWWNELQWDDLSTQNAFLPCFESLY
Low Complexity Region (SEG)
MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSevlveellvlkhlnllTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLKRLECAELKELPLDCNHGLEQKIIIKGQEHWWNELQWDDLSTQNAFLPCFESLY
Disordered region (IsUnstruct)
************KENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLKRLECAELKELPLDCNHGLEQKIIIKGQEHWWNELQWDDLSTQNAFLPCF****
Disordered Region (DISOPRED)
MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLKRLECAELKELPLDCNHGLEQKIIIKGQEHWWNELQWDDLSTQNAFLPCFESLY
Disordered Region (DISEMBL)
MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLKRLECAELKELPLDCNHGLEQKIIIKGQEHWWNELQWDDLSTQNAFLPCFESLY
Disordered Region (DISPRO)
MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLKRLECAELKELPLDCNHGLEQKIIIKGQEHWWNELQWDDLSTQNAFLPCFESL*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLKRLECAELKELPLDCNHGLEQKIIIKGQEHWWNELQWDDLSTQNAFLPCFESLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	366	2.2.26 [Sep-21-2011]
Q9SH22	884	Probable disease resistan	yes	no	0.907	0.375	0.319	4e-33
Q8RXS5	888	Probable disease resistan	no	no	0.956	0.394	0.322	7e-32
Q9SI85	893	Probable disease resistan	no	no	0.907	0.371	0.306	5e-30
O64973	889	Disease resistance protei	no	no	0.928	0.382	0.297	1e-28
Q9FLB4	874	Putative disease resistan	no	no	0.939	0.393	0.297	1e-27
Q9FG91	848	Probable disease resistan	no	no	0.666	0.287	0.359	2e-26
Q940K0	889	Probable disease resistan	no	no	0.390	0.160	0.496	6e-26
O64789	925	Probable disease resistan	no	no	0.390	0.154	0.489	8e-26
Q9C8T9	898	Putative disease resistan	no	no	0.918	0.374	0.317	2e-25
O22727	967	Probable disease resistan	no	no	0.368	0.139	0.489	2e-25

>sp|Q9SH22|DRL20_ARATH Probable disease resistance protein At1g63360 OS=Arabidopsis thaliana GN=At1g63360 PE=2 SV=1

 Score =  142 bits (358), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 135/423 (31%), Positives = 196/423 (46%), Gaps = 91/423 (21%)

Query: 1   MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRT 60
           M L IAS +  +KE F+V AGVG+ E P I  W    RMSLM+N I +L     C  L T
Sbjct: 482 MALWIASELGIQKEAFIVRAGVGVREIPKIKNWNVVRRMSLMENKIHHLVGSYECMELTT 541

Query: 61  LFLPSNHLG-------TVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISW 113
           L L     G       T+S+ FF+ M  L VL LS+N+SL  LP  I NLVSL++L++ +
Sbjct: 542 LLLGKREYGSIRSQLKTISSEFFNCMPKLAVLDLSHNKSLFELPEEISNLVSLKYLNLLY 601

Query: 114 TGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSI 173
           T I+ LP  ++ L  +  LNLEYT +L  I    IS L  L+ L++F      +L     
Sbjct: 602 TEISHLPKGIQELKKIIHLNLEYTRKLESITG--ISSLHNLKVLKLFRSRLPWDLNT--- 656

Query: 174 LFGDSEVLVEELLVLKHLNLLTITL----QSFGALQRLLSYCRLGSISTQCLCLRHLNNS 229
                   V+EL  L+HL +LT T+    + F +  RLLS+ RL  I        + ++ 
Sbjct: 657 --------VKELETLEHLEILTTTIDPRAKQFLSSHRLLSHSRLLEI--------YGSSV 700

Query: 230 NSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIR--EICGFHSLQKV--------- 278
           +SL+       RHL +L +  + L E +I +  +  I+   IC F SL  V         
Sbjct: 701 SSLN-------RHLESLSVSTDKLREFQIKSCSISEIKMGGICNFLSLVDVNIFNCEGLR 753

Query: 279 -------FYKILKI---EARDMACTCSQYQAC---PRGLTKFEE------HPLKRL---- 315
                    KI  +    A+D+    ++ +AC     G+  F E      H L +L    
Sbjct: 754 ELTFLIFAPKIRSLSVWHAKDLEDIINEEKACEGEESGILPFPELNFLTLHDLPKLKKIY 813

Query: 316 ---------------ECAELKELPLDCNHGLEQK---IIIKGQEHWWNELQWDDLSTQNA 357
                          EC  L++LPLD   G + +   II      W+  ++W D +T+  
Sbjct: 814 WRPLPFLCLEEINIRECPNLRKLPLDSTSGKQGENGCIIRNKDSRWFEGVKWADEATKKR 873

Query: 358 FLP 360
           FLP
Sbjct: 874 FLP 876

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score =  138 bits (348), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 133/413 (32%), Positives = 196/413 (47%), Gaps = 63/413 (15%)

Query: 1   MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRT 60
           M L IAS   K+KENF+V AG+     P I  WK   R+SLM N I+++ + P  P+L T
Sbjct: 478 MALWIASDFGKQKENFIVQAGLQSRNIPEIEKWKVARRVSLMFNNIESIRDAPESPQLIT 537

Query: 61  LFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLP 120
           L L  N LG +S++FF  M  L VL LS NR L +LP  I   VSLQ+L +S T I   P
Sbjct: 538 LLLRKNFLGHISSSFFRLMPMLVVLDLSMNRDLRHLPNEISECVSLQYLSLSRTRIRIWP 597

Query: 121 IELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEV 180
             L  L  L  LNLEYT  +  I    IS L  L+ LR+F  GF            +   
Sbjct: 598 AGLVELRKLLYLNLEYTRMVESICG--ISGLTSLKVLRLFVSGF-----------PEDPC 644

Query: 181 LVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASL 240
           ++ EL +L++L  LTITL     L++ LS  RL S  T+ L + +LN  +S+  F  A++
Sbjct: 645 VLNELQLLENLQTLTITLGLASILEQFLSNQRLAS-CTRALRIENLNPQSSVISFV-ATM 702

Query: 241 RHLRTLQLYFNDLEELKIDAGE----LKRIREICGFHSLQKVFYK--------------- 281
             L+ L    +D+ E+K+   E    L        F +L +V  +               
Sbjct: 703 DSLQELHFADSDIWEIKVKRNETVLPLHIPTTTTFFPNLSQVSLEFCTRLRDLTWLIFAP 762

Query: 282 ---ILK-IEARDMACTCSQYQACPRGLTKFEEHPLKRLE--------------------- 316
              +L+ I A D+    ++ +A  + L  F+E    RLE                     
Sbjct: 763 NLTVLRVISASDLKEVINKEKAEQQNLIPFQELKELRLENVQMLKHIHRGPLPFPCLQKI 822

Query: 317 ----CAELKELPLDCNHGLEQKIIIKGQEHWWNELQWDDLSTQNAFLPCFESL 365
               C+EL++LPL+        ++I+  + W   L+W+D +T+  FLP  ++ 
Sbjct: 823 LVNGCSELRKLPLNFTSVPRGDLVIEAHKKWIEILEWEDEATKARFLPTLKAF 875

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI85|DRL14_ARATH Probable disease resistance protein At1g62630 OS=Arabidopsis thaliana GN=At1g62630 PE=3 SV=2

 Score =  132 bits (331), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 132/431 (30%), Positives = 189/431 (43%), Gaps = 99/431 (22%)

Query: 1   MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRT 60
           M L IAS +  +KE F+V AGVG+ E P +  W    RMSLM N I +L     C  L T
Sbjct: 482 MALWIASELGIQKEAFIVRAGVGVREIPKVKNWNVVRRMSLMGNKIHHLVGSYECMELTT 541

Query: 61  LFLPSNHLG---------TVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDI 111
           L L     G         T+S+ FF+ M  L VL LS+N+SL  LP  I NLVSL++L++
Sbjct: 542 LLLGEGEYGSIWRWSEIKTISSEFFNCMPKLAVLDLSHNQSLFELPEEISNLVSLKYLNL 601

Query: 112 SWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEAD 171
           S TGI  L   ++ L  +  LNLE+T +L  I    IS L  L+ L+++      +L   
Sbjct: 602 SHTGIRHLSKGIQELKKIIHLNLEHTSKLESIDG--ISSLHNLKVLKLYGSRLPWDLNT- 658

Query: 172 SILFGDSEVLVEELLVLKHLNLLTITL----QSFGALQRLLSYCRLGSISTQCLCLRHLN 227
                     V+EL  L+HL +LT T+    + F +  RL+S  RL              
Sbjct: 659 ----------VKELETLEHLEILTTTIDPRAKQFLSSHRLMSRSRL-------------- 694

Query: 228 NSNSLSVFA---FASLRHLRTLQLYFNDLEELKIDAGELKRIR--EICGFHSLQKV---- 278
               L +F    F+  R L +L +  + L E +I    +  I+   IC F SL  V    
Sbjct: 695 ----LQIFGSNIFSPDRQLESLSVSTDKLREFEIMCCSISEIKMGGICNFLSLVDVTIYN 750

Query: 279 -----------FYKILK----IEARDMACTCSQYQAC---PRGLTKFEE----------- 309
                      F   L+    ++A+D+    ++ +AC     G+  F E           
Sbjct: 751 CEGLRELTFLIFAPKLRSLSVVDAKDLEDIINEEKACEGEDSGIVPFPELKYLNLDDLPK 810

Query: 310 ------HPLKRL--------ECAELKELPLDCNHGLEQK---IIIKGQEHWWNELQWDDL 352
                  PL  L        EC  L++LPLD   G + +   II      W   ++W D 
Sbjct: 811 LKNIYRRPLPFLCLEKITIGECPNLRKLPLDSRSGKQGENGCIIHYKDSRWLKGVKWADE 870

Query: 353 STQNAFLPCFE 363
           +T+  FLP  E
Sbjct: 871 ATKKRFLPSCE 881

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score =  127 bits (320), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 124/417 (29%), Positives = 187/417 (44%), Gaps = 77/417 (18%)

Query: 1   MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRT 60
           M L I+S + K+KE  +V AGVGL E P +  W    ++SLM N I+ + +   C  L T
Sbjct: 484 MALWISSDLGKQKEKCIVRAGVGLREVPKVKDWNTVRKISLMNNEIEEIFDSHECAALTT 543

Query: 61  LFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLP 120
           LFL  N +  +S  FF  M  L VL LS N+SL  LP  I  L SL++ ++S+T I  LP
Sbjct: 544 LFLQKNDVVKISAEFFRCMPHLVVLDLSENQSLNELPEEISELASLRYFNLSYTCIHQLP 603

Query: 121 IELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEV 180
           + L  L  L  LNLE+   L  I    IS+L  LR L +           DS L  D   
Sbjct: 604 VGLWTLKKLIHLNLEHMSSLGSILG--ISNLWNLRTLGL----------RDSRLLLDMS- 650

Query: 181 LVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLN----NSNSLSVFA 236
           LV+EL +L+HL ++T+ + S    + LL   RL        C++ ++       S+ V  
Sbjct: 651 LVKELQLLEHLEVITLDISSSLVAEPLLCSQRLVE------CIKEVDFKYLKEESVRVLT 704

Query: 237 FASLRHLRTLQLYFNDLEELKIDAGELKRIREICG----FHSLQKVFYK----------- 281
             ++ +LR L +    + E+KI+       R        F +L +VF             
Sbjct: 705 LPTMGNLRKLGIKRCGMREIKIERTTSSSSRNKSPTTPCFSNLSRVFIAKCHGLKDLTWL 764

Query: 282 --------------------ILKIEARDMACTCSQYQACPRGLTKFEEHPLKRL------ 315
                               I + +A + + T   ++     L  FE   LKR+      
Sbjct: 765 LFAPNLTFLEVGFSKEVEDIISEEKAEEHSATIVPFRKL-ETLHLFELRGLKRIYAKALH 823

Query: 316 ----------ECAELKELPLDCNHGL--EQKIIIKGQEHWWNELQWDDLSTQNAFLP 360
                     +C +L++LPLD   G+  E+ +I  G+  W   ++W+D +TQ  FLP
Sbjct: 824 FPCLKVIHVEKCEKLRKLPLDSKSGIAGEELVIYYGEREWIERVEWEDQATQLRFLP 880

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB4|DRL31_ARATH Putative disease resistance protein At5g05400 OS=Arabidopsis thaliana GN=At5g05400 PE=2 SV=1

 Score =  124 bits (312), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 125/420 (29%), Positives = 185/420 (44%), Gaps = 76/420 (18%)

Query: 1   MTLRIASTINKEKE-NFLVL-AGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRL 58
           M L I+S    +K+ N LV+ A   L + P I   K   RMSL+ N I+   E   CP+L
Sbjct: 470 MALWISSGCGDQKQKNVLVVEANAQLRDIPKIEDQKAVRRMSLIYNQIEEACESLHCPKL 529

Query: 59  RTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITT 118
            TL L  N L  +S  F   +  L VL LS N +L  LP     L SL+ L++S TGIT+
Sbjct: 530 ETLLLRDNRLRKISREFLSHVPILMVLDLSLNPNLIELP-SFSPLYSLRFLNLSCTGITS 588

Query: 119 LPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDS 178
           LP  L  L NL  LNLE+T+ L RI +  I DL  L  L+++  G ++           +
Sbjct: 589 LPDGLYALRNLLYLNLEHTYMLKRIYE--IHDLPNLEVLKLYASGIDI-----------T 635

Query: 179 EVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFA 238
           + LV ++  +KHL LLTITL++   L+  L   R  S  T+ L L   +   SL V   A
Sbjct: 636 DKLVRQIQAMKHLYLLTITLRNSSGLEIFLGDTRFSSY-TEGLTLDEQSYYQSLKV-PLA 693

Query: 239 SLRHLRTLQLYFNDLEELKIDAGELK-------RIREICGFHSLQKVF------------ 279
           ++   R L++  + + +++I+            R+R    F +L+KV             
Sbjct: 694 TISSSRFLEIQDSHIPKIEIEGSSSNESEIVGPRVRRDISFINLRKVRLDNCTGLKDLTW 753

Query: 280 -------------------YKILKIEARDMACTCSQYQACP---------RGLTKFEEHP 311
                              + I + E   +  TC      P         R L + +   
Sbjct: 754 LVFAPHLATLYVVCLPDIEHIISRSEESRLQKTCELAGVIPFRELEFLTLRNLGQLKSIY 813

Query: 312 LKRLECAELKE-----------LPLDCNHGLEQKIIIKGQEHWWNELQWDDLSTQNAFLP 360
              L   +LKE           LPLD     +Q ++I  +E W   LQW+D++T+  F P
Sbjct: 814 RDPLLFGKLKEINIKSCPKLTKLPLDSRSAWKQNVVINAEEEWLQGLQWEDVATKERFFP 873

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG91|DRL32_ARATH Probable disease resistance protein At5g43730 OS=Arabidopsis thaliana GN=At5g43730 PE=2 SV=1

 Score =  120 bits (300), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/259 (35%), Positives = 136/259 (52%), Gaps = 15/259 (5%)

Query: 1   MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRT 60
           M L I S    ++E   V +G  +   P+   W+   +MSL+   ++ +   P CP L T
Sbjct: 478 MALWINSDFGNQQETICVKSGAHVRLIPNDISWEIVRQMSLISTQVEKIACSPNCPNLST 537

Query: 61  LFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLP 120
           L LP N L  +S  FF  M  L VL LS N SL  LP  I NL SLQ+L++S TGI +LP
Sbjct: 538 LLLPYNKLVDISVGFFLFMPKLVVLDLSTNWSLIELPEEISNLGSLQYLNLSLTGIKSLP 597

Query: 121 IELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEV 180
           + LK L  L  LNLE+T  L  +   + + L  L+ L++F   F V+           ++
Sbjct: 598 VGLKKLRKLIYLNLEFTNVLESL-VGIATTLPNLQVLKLFYSLFCVD-----------DI 645

Query: 181 LVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASL 240
           ++EEL  LKHL +LT T++    L+R+    RL S S + LCLR  N S    +    +L
Sbjct: 646 IMEELQRLKHLKILTATIEDAMILERVQGVDRLAS-SIRGLCLR--NMSAPRVILNSVAL 702

Query: 241 RHLRTLQLYFNDLEELKID 259
             L+ L +   ++ E++ID
Sbjct: 703 GGLQQLGIVSCNISEIEID 721

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940K0|DRL15_ARATH Probable disease resistance protein At1g61180 OS=Arabidopsis thaliana GN=At1g61180 PE=2 SV=2

 Score =  118 bits (296), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 81/143 (56%)

Query: 1   MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRT 60
           M L IAS   K+KENF+V AGVGL E P +  W    +MSLM N I+ +T    C  L T
Sbjct: 478 MALWIASDFGKQKENFVVQAGVGLHEIPKVKDWGAVRKMSLMDNDIEEITCESKCSELTT 537

Query: 61  LFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLP 120
           LFL SN L  +   F   M  L VL LSYNR    LP  I  LVSLQ LD+S T I  +P
Sbjct: 538 LFLQSNKLKNLPGAFIRYMQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTSIEHMP 597

Query: 121 IELKYLVNLKCLNLEYTFRLSRI 143
           I LK L  L  L+L YT RL  I
Sbjct: 598 IGLKELKKLTFLDLTYTDRLCSI 620

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64789|DRL18_ARATH Probable disease resistance protein At1g61310 OS=Arabidopsis thaliana GN=At1g61310 PE=2 SV=1

 Score =  118 bits (295), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/143 (48%), Positives = 82/143 (57%)

Query: 1   MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRT 60
           M L IAS   K+KENF+V A  GL E P +  W    RMSLM+N I+ +T    C  L T
Sbjct: 491 MALWIASDFGKQKENFVVQASAGLHEIPEVKDWGAVRRMSLMRNEIEEITCESKCSELTT 550

Query: 61  LFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLP 120
           LFL SN L  +S  F   M  L VL LS NR    LP  I  LVSLQ+LD+S+T I  LP
Sbjct: 551 LFLQSNQLKNLSGEFIRYMQKLVVLDLSDNRDFNELPEQISGLVSLQYLDLSFTRIEQLP 610

Query: 121 IELKYLVNLKCLNLEYTFRLSRI 143
           + LK L  L  L+L YT RL  I
Sbjct: 611 VGLKELKKLTFLDLAYTARLCSI 633

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8T9|DRL19_ARATH Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana GN=At1g63350 PE=2 SV=1

 Score =  117 bits (293), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 131/413 (31%), Positives = 182/413 (44%), Gaps = 77/413 (18%)

Query: 1   MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRT 60
           M L IAS + K+ E F+V A VGL E   +  W    RMSLM+N I +L     C  L T
Sbjct: 482 MALWIASDLGKQNEAFIVRASVGLREILKVENWNVVRRMSLMKNNIAHLDGRLDCMELTT 541

Query: 61  LFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLP 120
           L L S HL  +S+ FF+SM  L VL LS N  L  LP GI  LVSLQ+L++S TGI  LP
Sbjct: 542 LLLQSTHLEKISSEFFNSMPKLAVLDLSGNYYLSELPNGISELVSLQYLNLSSTGIRHLP 601

Query: 121 IELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEV 180
             L+ L  L  L LE T +L  +    IS L  L+ L++    +  +L+           
Sbjct: 602 KGLQELKKLIHLYLERTSQLGSMVG--ISCLHNLKVLKLSGSSYAWDLDT---------- 649

Query: 181 LVEELLVLKHLNLLTITLQ--SFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFA 238
            V+EL  L+HL +LT T+   + G  Q L S+ RL S      C+R L  SN+ +    +
Sbjct: 650 -VKELEALEHLEVLTTTIDDCTLGTDQFLSSH-RLMS------CIRFLKISNNSNRNRNS 701

Query: 239 SLRHLRTLQLYFNDLEELKIDAGELKRIR--EICGFHSLQKV------------------ 278
           S     +L +  + L+E  I+      I+   IC F SL +V                  
Sbjct: 702 S---RISLPVTMDRLQEFTIEHCHTSEIKMGRICSFSSLIEVNLSNCRRLRELTFLMFAP 758

Query: 279 ----FYKILKIEARDMACTCSQYQACPRGLTKF----EEH---------------PLKRL 315
                + +   +  D+      +     G+  F    E H               P   L
Sbjct: 759 NLKRLHVVSSNQLEDIINKEKAHDGEKSGIVPFPKLNELHLYNLRELKNIYWSPLPFPCL 818

Query: 316 E------CAELKELPLDC---NHGLEQKIIIKGQEHWWNELQWDDLSTQNAFL 359
           E      C  LK+LPLD     HG    II   +  W   ++W+D +T+  FL
Sbjct: 819 EKINVMGCPNLKKLPLDSKSGKHGGNGLIITHREMEWITRVEWEDEATKTRFL 871

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O22727|DRL16_ARATH Probable disease resistance protein At1g61190 OS=Arabidopsis thaliana GN=At1g61190 PE=3 SV=1

 Score =  117 bits (292), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/143 (48%), Positives = 82/143 (57%)

Query: 1   MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRT 60
           M L IAS   K+KEN++V A VGL E P +  W    RMSLM N I+ +T    C  L T
Sbjct: 482 MALWIASDFGKQKENYVVRARVGLHEIPKVKDWGAVRRMSLMMNEIEEITCESKCSELTT 541

Query: 61  LFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLP 120
           LFL SN L  +S  F   M  L VL LS+N     LP  I  LVSLQ+LD+SWT I  LP
Sbjct: 542 LFLQSNQLKNLSGEFIRYMQKLVVLDLSHNPDFNELPEQISGLVSLQYLDLSWTRIEQLP 601

Query: 121 IELKYLVNLKCLNLEYTFRLSRI 143
           + LK L  L  LNL +T RL  I
Sbjct: 602 VGLKELKKLIFLNLCFTERLCSI 624

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	366
24461866	890	NBS-LRR type disease resistance protein	0.975	0.401	0.430	1e-70
24461865	892	NBS-LRR type disease resistance protein	0.991	0.406	0.434	1e-66
24461861	890	NBS-LRR type disease resistance protein	0.978	0.402	0.426	5e-63
24461863	889	NBS-LRR type disease resistance protein	0.980	0.403	0.393	6e-58
224122896	820	cc-nbs-lrr resistance protein [Populus t	0.950	0.424	0.371	3e-56
24461864	899	NBS-LRR type disease resistance protein	0.991	0.403	0.387	2e-55
359482672	905	PREDICTED: probable disease resistance p	0.975	0.394	0.381	9e-53
225442867	893	PREDICTED: probable disease resistance p	0.945	0.387	0.375	2e-51
147852651	882	hypothetical protein VITISV_017542 [Viti	0.887	0.368	0.379	2e-49
359482674	991	PREDICTED: probable disease resistance p	0.948	0.350	0.372	2e-48

>gi|24461866|gb|AAN62353.1|AF506028_20 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 180/418 (43%), Positives = 237/418 (56%), Gaps = 61/418 (14%)

Query: 1   MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRT 60
           M L IA  I KEK+NFLV AGVGL EAP +  W++  R+SLM N I NL+E+ TCP L T
Sbjct: 480 MALWIACAIEKEKDNFLVYAGVGLIEAPDVSGWEKARRLSLMHNQITNLSEVATCPHLLT 539

Query: 61  LFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLP 120
           LFL  N L  + N+FF  M SL+VL L+ + SL NLP GI  LVSLQHLD+S + I  LP
Sbjct: 540 LFLNENELQMIHNDFFRFMPSLKVLNLA-DSSLTNLPEGISKLVSLQHLDLSKSSIEELP 598

Query: 121 IELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV--ELEADSILFGDS 178
           +ELK LVNLKCLNLEYT+ L+ IP+Q+IS+L  L  LRMF    +       DSILFG  
Sbjct: 599 LELKALVNLKCLNLEYTWSLTTIPRQLISNLSRLHVLRMFAASHSAFDRASEDSILFGGG 658

Query: 179 EVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFA 238
           E++VEELL LK+L +++ TL+S   LQ  LS  +L S  T+ L L+  N+S SL V A A
Sbjct: 659 ELIVEELLGLKYLEVISFTLRSSHGLQSFLSSHKLRS-CTRALLLQCFNDSTSLEVSALA 717

Query: 239 SLRHLRTLQLY-FNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEA-RDMA----- 291
            L+ L  L +     LEELK+D    + +++   FHSL+KV  +IL     +D+      
Sbjct: 718 DLKQLNRLWITECKKLEELKMDY--TREVQQFV-FHSLKKV--EILACSKLKDLTFLVFA 772

Query: 292 --CTCSQYQACPR-----GLTKFEE--------HPLKRLE-------------------- 316
                 +   CP       + KF E        +P  +L+                    
Sbjct: 773 PNLESIELMGCPAMEEMVSMGKFAEVPEVVANLNPFAKLQNLKLFGATNLKSIYWKPLPF 832

Query: 317 ----------CAELKELPLDCNHGLEQKIIIKGQEHWWNELQWDDLSTQNAFLPCFES 364
                     C +LK+LPLD N   E+ I+I G   WW +L+W D +T+NAFLPCF+S
Sbjct: 833 PHLKSMSFSHCYKLKKLPLDSNSARERNIVISGTRRWWEQLEWVDEATRNAFLPCFDS 890

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461865|gb|AAN62352.1|AF506028_19 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 180/414 (43%), Positives = 239/414 (57%), Gaps = 51/414 (12%)

Query: 1   MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRT 60
           M L IA  I +EKENF V AGVGL EAP +  W++  R+SLMQN I+NL+EIPTCP L T
Sbjct: 481 MALWIACDIEREKENFFVYAGVGLVEAPDVRGWEKARRLSLMQNQIRNLSEIPTCPHLLT 540

Query: 61  LFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLP 120
           L L  N+L  + N FF  M SL+VL LS+   L  LP+GI  LVSLQHLD+S + I   P
Sbjct: 541 LLLNENNLRKIQNYFFQFMPSLKVLNLSHC-ELTKLPVGISELVSLQHLDLSESDIEEFP 599

Query: 121 IELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV--ELEADSILFGDS 178
            ELK LVNLKCL+LEYT  L  IP+Q+IS+L  LR LRMF    N   E   +SILFG  
Sbjct: 600 GELKALVNLKCLDLEYTRNLITIPRQLISNLSRLRVLRMFGASHNAFDEASENSILFGGG 659

Query: 179 EVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFA 238
           E++VEELL LKHL ++T+TL+S   LQ  L+  +L S  TQ L L+H  +S SL V A A
Sbjct: 660 ELIVEELLGLKHLEVITLTLRSSYGLQSFLNSHKLRS-CTQALLLQHFKDSTSLEVSALA 718

Query: 239 SLRHLRTLQLYFND-LEELKID-AGELKR-------IREICGFHSLQKVFY-------KI 282
            L+ L  LQ+  +  LEELK+D A E+++       + EIC    L+ + +       K 
Sbjct: 719 DLKQLNRLQIANSVILEELKMDYAEEVQQFAFRSLNMVEICNCIQLKDLTFLVFAPNLKS 778

Query: 283 LKI---EARDMACTCSQYQACPR---GLTKFEE-------------------------HP 311
           +K+    A +   +  ++   P     L  FE+                           
Sbjct: 779 IKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGARNLKSIYWKSLPFPHLKA 838

Query: 312 LKRLECAELKELPLDCNHGLEQKIIIKGQEHWWNELQWDDLSTQNAFLPCFESL 365
           +  L C +LK+LPLD N   E+KI+I G+ +W  +LQW+D +T+NAFL CF  +
Sbjct: 839 MSFLHCKKLKKLPLDSNSAKERKIVISGERNWREQLQWEDEATRNAFLRCFRDV 892

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461861|gb|AAN62348.1|AF506028_15 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  247 bits (631), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 177/415 (42%), Positives = 238/415 (57%), Gaps = 57/415 (13%)

Query: 1   MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRT 60
           M L +A    KEKEN+LV AG GL EAP +  W++  R+SLM+N I+NL+E+PTCP L T
Sbjct: 482 MALWLACDAEKEKENYLVYAGAGLREAPDVIEWEKLRRLSLMENQIENLSEVPTCPHLLT 541

Query: 61  LFLPSNH-LGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTL 119
           LFL S+  L  ++++F  SM  L+VL LS    L  LPLGI  LVSL++LD+S + I+ +
Sbjct: 542 LFLNSDDILWRINSDFLQSMLRLKVLNLSRYMGLLVLPLGISKLVSLEYLDLSTSLISEI 601

Query: 120 PIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGF----NVELEADSILF 175
           P ELK LVNLKCLNLEYT RL +IP Q+IS+   L  LRMF   +    N  +E  S+LF
Sbjct: 602 PEELKALVNLKCLNLEYTGRLLKIPLQLISNFSRLHVLRMFGNAYFSYGNYPIE--SVLF 659

Query: 176 GDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVF 235
           G  E+LVEELL LKHL +L++TL S  ALQ  L+   L S  T+ + L+    S S+ V 
Sbjct: 660 GGGELLVEELLGLKHLEVLSLTLGSSRALQSFLTSHMLRS-CTRAMLLQDFQGSTSVDVS 718

Query: 236 AFASLRHLRTLQLY-FNDLEELKID-AGELKRIREICGFHSLQ--KVFY----------- 280
             A L+ L+ L++    +L ELKID AGE++R     GFHSLQ  +V Y           
Sbjct: 719 GLADLKRLKRLRISDCYELVELKIDYAGEVQRY----GFHSLQSFEVNYCSKLKDLTLLV 774

Query: 281 --------KILKIEARDMACTCSQYQACPRGLTKFEEHPLKRL----------------- 315
                   ++   EA +   +  ++   P    K +   +  L                 
Sbjct: 775 LIPNLKSIEVTDCEAMEEIISVGEFAGNPNAFAKLQYLGIGNLPNLKSIYWKPLPFPCLE 834

Query: 316 -----ECAELKELPLDCNHGLEQKIIIKGQEHWWNELQWDDLSTQNAFLPCFESL 365
                +C ELK+LPLD N   E KI+I+G  +WW  LQW+D +TQNAFL CF+SL
Sbjct: 835 ELTVSDCYELKKLPLDSNSAKEHKIVIRGAANWWRNLQWEDEATQNAFLSCFQSL 889

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461863|gb|AAN62350.1|AF506028_17 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  231 bits (588), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 165/419 (39%), Positives = 226/419 (53%), Gaps = 60/419 (14%)

Query: 1   MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRT 60
           M L I   I +EK NFLV AG GL +AP++  W+   R+SLMQN I+ L+E+PTCP L T
Sbjct: 472 MALWIVCEIEEEKRNFLVRAGAGLEQAPAVKEWENVRRLSLMQNDIKILSEVPTCPDLHT 531

Query: 61  LFLPS-NHLGTVSNNFFHSMASLRVLILSYNRSLE--NLPLGIFNLVSLQHLDISWTGIT 117
           LFL S N+L  +++ FF  M SL+VL +S+   L+   LPLG+  L SL+ LDIS T I 
Sbjct: 532 LFLASNNNLQRITDGFFKFMPSLKVLKMSHCGDLKVLKLPLGMSMLGSLELLDISQTSIG 591

Query: 118 TLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECG-FNVELEADSILFG 176
            LP ELK LVNLKCLNL +   LS+IP+Q+IS+   L  LRMF  G  + E   DS+LFG
Sbjct: 592 ELPEELKLLVNLKCLNLRWATWLSKIPRQLISNSSRLHVLRMFATGCSHSEASEDSVLFG 651

Query: 177 DSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNS-LSVF 235
             EVL++ELL LK+L +L +TL+S  ALQ   S  +L S   + L L  +  + S +   
Sbjct: 652 GGEVLIQELLGLKYLEVLELTLRSSHALQLFFSSNKLKS-CIRSLLLDEVRGTKSIIDAT 710

Query: 236 AFASLRHLRTLQL-YFNDLEELKIDAGEL-KRIREICGFHSLQKVF-------------- 279
           AFA L HL  L++    ++EELKID  E+ ++ RE   F SL +V               
Sbjct: 711 AFADLNHLNELRIDSVAEVEELKIDYTEIVRKRREPFVFGSLHRVTLGQCLKLKDLTFLV 770

Query: 280 -------YKILKIEARDMACTCSQYQACP---------RGLTKFEEHPLKRLE------- 316
                   ++L   A +   +  ++   P           L +     L RL+       
Sbjct: 771 FAPNLKSLQLLNCRAMEEIISVGKFAEVPEVMGHISPFENLQRLHLFDLPRLKSIYWKPL 830

Query: 317 ------------CAELKELPLDCNHGLEQKIIIKGQEHWWNELQWDDLSTQNAFLPCFE 363
                       C +LK+LPLD N     K +I+G+   WN LQW+D +TQ AF  CF+
Sbjct: 831 PFTHLKEMRVHGCNQLKKLPLDSNSA---KFVIRGEAEGWNRLQWEDDATQIAFRSCFQ 886

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122896|ref|XP_002318943.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222857319|gb|EEE94866.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  225 bits (573), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 149/401 (37%), Positives = 213/401 (53%), Gaps = 53/401 (13%)

Query: 11  KEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGT 70
           KE   +LV AG  L +AP +G W+   R+SLM N IQNL++ P C  L TLFL  N+L  
Sbjct: 423 KENPVYLVEAGTQLADAPEVGKWEVVRRVSLMANNIQNLSKAPRCNDLVTLFLKKNNLKM 482

Query: 71  VSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLK 130
           +S+ FF  M SL+VL LS NR +   P GI  LVSLQ+L++S TGI  LP++LK LV LK
Sbjct: 483 ISDTFFQFMLSLKVLDLSENREITEFPSGILKLVSLQYLNLSRTGIRQLPVQLKNLVKLK 542

Query: 131 CLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKH 190
           CLNLE+T+ L  IP QVIS+   L  LRMF C  +  +  D +  G    L  +L  L+H
Sbjct: 543 CLNLEHTYELRTIPMQVISNFSSLTVLRMFHCASSDSVVGDGVQTGGPGSLARDLQCLEH 602

Query: 191 LNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYF 250
           LNLLTIT++S  +LQ   S+ +  + +TQ L L+  +++ SL +     +  L  L+L  
Sbjct: 603 LNLLTITIRSQYSLQTFASFNKFLT-ATQALSLQKFHHARSLDISLLEGMNSLDDLELID 661

Query: 251 -NDLEELKIDAGELKRIREICGFHSLQKV-FYKILKIEARDMA-------------CTCS 295
            ++L++L I+   + R      F+SL++V      K+E  D+A               CS
Sbjct: 662 CSNLKDLSINNSSITR---ETSFNSLRRVSIVNCTKLE--DLAWLTLAPNIKFLTISRCS 716

Query: 296 -------QYQACPRGLTKFEEHPLKRL-------------------------ECAELKEL 323
                  Q ++  R L  FEE    RL                         +C  L++L
Sbjct: 717 KMEEIIRQEKSGQRNLKVFEELEFLRLVSLPKLKVIYPDALPFPSLKEIFVDDCPNLRKL 776

Query: 324 PLDCNHGLEQKIIIKGQEHWWNELQWDDLSTQNAFLPCFES 364
           PL+ N   E +I+I+G E WW  L+W+D + Q+ FL  F+ 
Sbjct: 777 PLNSNSAKEHRIVIQGWEDWWRRLEWEDEAAQHTFLHSFKG 817

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461864|gb|AAN62351.1|AF506028_18 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 162/418 (38%), Positives = 216/418 (51%), Gaps = 55/418 (13%)

Query: 1   MTLRIA------STINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPT 54
           MTL IA          K+KEN+LV  G GLTEAP++  W+   R+SLM+  I+NL+E+PT
Sbjct: 483 MTLWIACDTEKTEDTEKKKENYLVYEGAGLTEAPNVREWENAKRLSLMETQIRNLSEVPT 542

Query: 55  CPRLRTLFLPSNH-LGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISW 113
           C  L TLFL  N  L  ++ +FF SM  L+VL LS  R + + PLG+  LVSLQHLD+S 
Sbjct: 543 CLHLLTLFLVFNEELEMITGDFFKSMPCLKVLNLSGARRMSSFPLGVSVLVSLQHLDLSG 602

Query: 114 TGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECG--FNVELEAD 171
           T I  LP EL  L NLK LNL+ T  L  IP+Q+IS    L  LRMF  G         D
Sbjct: 603 TAIQELPKELNALENLKSLNLDQTHYLITIPRQLISRFSCLVVLRMFGVGDWSPNGKRND 662

Query: 172 SILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNS 231
           S LF   ++LVE L  LKHL +L++TL +   LQ +L+  +L S  TQ L L     S  
Sbjct: 663 SDLFSGGDLLVEALRGLKHLEVLSLTLNNSQDLQCVLNSEKLRS-CTQALYLHSFKRSEP 721

Query: 232 LSVFAFASLRHLRTLQLY-FNDLEELKIDAG-----ELKRIREICGFHSLQKVFYKILKI 285
           L V A A L HL  L ++   +LEELK+         L++I +I G H L+ + + +   
Sbjct: 722 LDVSALAGLEHLNRLWIHECEELEELKMARQPFVFQSLEKI-QIYGCHRLKNLTFLLFAP 780

Query: 286 EARDM---ACTCSQYQACPRGLTKFEE-----HPLKRL---------------------- 315
             + +   +C   +          F E      P  +L                      
Sbjct: 781 NLKSIEVSSCFAMEEIISEVKFADFPEVMPIIKPFAQLYSLRLGGLTVLKSIYKRPLPFP 840

Query: 316 --------ECAELKELPLDCNHGLEQKIIIKGQEHWWNELQWDDLSTQNAFLPCFESL 365
                    C EL++LPLD N   E+KI+I+G   WW +LQW+D  TQNAF PCF S+
Sbjct: 841 CLRDLTVNSCDELRKLPLDSNSAKERKIVIRGYTKWWEQLQWEDQDTQNAFRPCFRSI 898

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482672|ref|XP_003632805.1| PREDICTED: probable disease resistance protein At1g12280-like [Vitis vinifera]

 Score =  213 bits (543), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 163/427 (38%), Positives = 216/427 (50%), Gaps = 70/427 (16%)

Query: 1   MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRT 60
           M L I     KE++ FLV AG  LTEAP +  W    R+SLM N I+ LT  P CP L T
Sbjct: 479 MALWIGCETGKEQDKFLVKAGSTLTEAPEVAEWMGPKRISLMDNQIEELTGSPKCPNLST 538

Query: 61  LFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLP 120
           LFL  N L  +S+ FF  M SLRVL LS N S+  LP GI NLVSLQ+L++S T I  LP
Sbjct: 539 LFLADNSLKMISDTFFQFMPSLRVLDLSKN-SITELPRGISNLVSLQYLNLSQTNIKELP 597

Query: 121 IELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVE-LEADSILFGDSE 179
           IELK L  LKCL L    +LS IP+Q+IS L ML+ + MF  G +   +  D IL  D+E
Sbjct: 598 IELKNLDKLKCLVLVDMPQLSSIPEQLISSLSMLQVIDMFNSGISERTVLKDGILSDDNE 657

Query: 180 VLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFAS 239
            LV+EL  LK+L+ L ++++S  A +RLLS  +L  I    LCL++ N S+SL++ + ++
Sbjct: 658 ALVQELESLKYLHGLGVSVKSASAFKRLLSSYKL-RICISGLCLKNFNGSSSLNLTSLSN 716

Query: 240 LRHLRTLQL-YFNDLEELKID-AGELK----------RIREICGFHSL------------ 275
            + L +L +     LE+L+ID AGE K          ++     FHSL            
Sbjct: 717 AKCLSSLYISKCGSLEDLEIDWAGEGKETVESNYLNSKVSSHNSFHSLVWLGIERCSRLK 776

Query: 276 ---QKVFYKILKIEARDMACTCSQYQ------ACPRGLTKFEE-HPLKRLECAELKE--- 322
                VF   LK+        C Q Q       C       E   P  +L+  EL +   
Sbjct: 777 DLTWLVFVPNLKVLT---IIDCDQMQEVIGTGKCGESAENGENLSPFVKLQVLELDDLPQ 833

Query: 323 ---------------------------LPLDCNHGLEQKIIIKGQEHWWNELQWDDLSTQ 355
                                      LPL  N     +I+I G   WWNE++W+D +TQ
Sbjct: 834 LKSIFWKALPFIYLNTIHVRNCPLLKKLPLSANSAKGNRIVIAGHNKWWNEVEWEDEATQ 893

Query: 356 NAFLPCF 362
           N FLPCF
Sbjct: 894 NVFLPCF 900

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442867|ref|XP_002281592.1| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 160/426 (37%), Positives = 216/426 (50%), Gaps = 80/426 (18%)

Query: 1   MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRT 60
           M L IA    KE++ FLV A  GLTEAP +  W    R+SL+ N I+ LT  P CP L T
Sbjct: 479 MALWIACETGKEQDKFLVQASSGLTEAPEVARWMGPKRISLIGNQIEKLTGSPNCPNLST 538

Query: 61  LFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLP 120
           LFL  N L  ++++FF  M +LRVL LS N ++  LP GI NLVSLQ+L++S T I  LP
Sbjct: 539 LFLQDNSLKMITDSFFQFMPNLRVLDLSRN-AMTELPQGISNLVSLQYLNLSQTNIKELP 597

Query: 121 IELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEV 180
           IELK L  LK L L +  RLS IP+Q+IS L ML+ + MF CG         I  GD E 
Sbjct: 598 IELKNLGKLKFL-LLHRMRLSSIPEQLISSLSMLQVIDMFNCG---------ICDGD-EA 646

Query: 181 LVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASL 240
           LVEEL  LK+L+ L +T+ S  A +RLLS  +L S  +  +CL + N S+SL++ +  ++
Sbjct: 647 LVEELESLKYLHDLGVTITSASAFKRLLSSDKLKSCISG-VCLENFNGSSSLNLTSLCNV 705

Query: 241 RHLRTLQLY-FNDLEELKID-AGELK----------RIREICGFHSLQK----------- 277
           + LR L +      E+L+ID A E K          ++     FH+L             
Sbjct: 706 KRLRNLFISNCGSSEDLEIDWAWEGKETTESNYLNSKVSSHSSFHNLSWLRVKRCSRLKD 765

Query: 278 ----VFYKILKIEARDMACTCSQYQ------ACPRGLTKFEE-HPLKRLECAELKEL--- 323
               VF   LK+    +  +C Q Q       C       E   P  +L+   L++L   
Sbjct: 766 LTWLVFAPNLKVL---LITSCDQMQEIIGTGKCGESTENGENLSPFVKLQVLTLEDLPQL 822

Query: 324 ---------------------------PLDCNHGLEQKIIIKGQEHWWNELQWDDLSTQN 356
                                      PLD N   E +I+I GQ  W+NEL W++ +T N
Sbjct: 823 KSIFWKALPFIYLNTIYVDSCPLLKKLPLDANSAKEHRIVISGQTEWFNELDWENEATHN 882

Query: 357 AFLPCF 362
           AFLPCF
Sbjct: 883 AFLPCF 888

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852651|emb|CAN80649.1| hypothetical protein VITISV_017542 [Vitis vinifera]

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 162/427 (37%), Positives = 209/427 (48%), Gaps = 102/427 (23%)

Query: 1   MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRT 60
           M L IA    KE++ FLV AG  LTEAP +  W    R+SLM N I+ LT  P CP L T
Sbjct: 479 MALWIARETGKEQDKFLVKAGSTLTEAPEVAEWMGPKRISLMNNQIEKLTGSPICPNLST 538

Query: 61  LFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLP 120
           LFL  N L  ++++FF  M +LRVL LS N S+  LP  I NLVSL++LD+S+T I  LP
Sbjct: 539 LFLRENSLKMITDSFFQFMPNLRVLDLSDN-SITELPREISNLVSLRYLDLSFTEIKELP 597

Query: 121 IELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEV 180
           IELK L NLKCL L +  +LS +P+Q+IS L ML+ + MF+CG         I  GD E 
Sbjct: 598 IELKNLGNLKCLLLSFMPQLSSVPEQLISSLLMLQVIDMFDCG---------ICDGD-EA 647

Query: 181 LVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGS-ISTQCLCLRHLNNSNSLSVFAFAS 239
           LVEEL  LK+L+ L++T+ S  A +RLLS  +L S IS +   LR+L  SN  S      
Sbjct: 648 LVEELESLKYLHDLSVTITSTSAFKRLLSSDKLRSCISRR---LRNLFISNCGS------ 698

Query: 240 LRHLRTLQLYFNDLEELKID-AGELKRIREI----------CGFHSLQK----------- 277
                        LE+L+ID  GE K+  E             FHSL+            
Sbjct: 699 -------------LEDLEIDWVGEGKKTVESNYLNSKVSSHNSFHSLEALTVVSCSRLKD 745

Query: 278 ----VFYKILKIEARDMACTCSQYQACPRGLTKFEEH--------PLKRLECAELKELP- 324
                F   LK+        C Q Q    G  K +E         P  +L+   L  LP 
Sbjct: 746 LTWVAFAPNLKVLT---IIDCDQMQEVI-GTRKSDESAENGENLGPFAKLQVLHLVGLPQ 801

Query: 325 -----------------------------LDCNHGLEQKIIIKGQEHWWNELQWDDLSTQ 355
                                        L+ N     +I+I GQ  WWNE++W+D +T 
Sbjct: 802 LKSIFWKALPLIYLNRIHVRNCPLLKKLPLNANSAKGHRIVISGQTEWWNEVEWEDEATH 861

Query: 356 NAFLPCF 362
           NAFLPCF
Sbjct: 862 NAFLPCF 868

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482674|ref|XP_002281708.2| PREDICTED: probable disease resistance protein At1g12280-like [Vitis vinifera]

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 157/422 (37%), Positives = 210/422 (49%), Gaps = 75/422 (17%)

Query: 1   MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRT 60
           M L IA    KE++ FLV AG  LTEAP +  W    R+SLM N I+ LT  P CP L T
Sbjct: 479 MALWIARETGKEQDKFLVKAGSTLTEAPEVAEWMGPKRISLMNNQIEKLTGSPICPNLST 538

Query: 61  LFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLP 120
           LFL  N L  ++++FF  M +LRVL LS N S+  LP GI NLVSL++LD+S T I  LP
Sbjct: 539 LFLRENSLKMITDSFFQFMPNLRVLDLSDN-SITELPQGISNLVSLRYLDLSLTEIKELP 597

Query: 121 IELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEV 180
           IELK L NLKCL L    +LS IP+Q+IS L ML+ + M  CG         I  GD E 
Sbjct: 598 IELKNLGNLKCLLLSDMPQLSSIPEQLISSLLMLQVIDMSNCG---------ICDGD-EA 647

Query: 181 LVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASL 240
           LVEEL  LK+L+ L +T+ S  A +RLLS  +L S  +  +CLR+ N S+SL++ +  ++
Sbjct: 648 LVEELESLKYLHDLGVTITSTSAFKRLLSSDKLRSCISS-VCLRNFNGSSSLNLTSLCNV 706

Query: 241 RHLRTLQLY-FNDLEELKID-AGELKRIREI----------CGFHSLQKVFYKILKIEAR 288
           ++L  L +     LE L ID A E K+  E             FHSL+ V  +      +
Sbjct: 707 KNLCELSISNCGSLENLVIDWAWEGKKTTESNYLNSKVSSHNSFHSLEVVVIESCS-RLK 765

Query: 289 DMA-------------CTCSQYQ------ACPRGLTKFEE-HPLKRLECAEL-------- 320
           D+                C Q Q       C       E   P  +L+  EL        
Sbjct: 766 DLTWVAFAPNLKALTIIDCDQMQEVIGTGKCGESAENGENLSPFVKLQVLELDDLPQLKS 825

Query: 321 ----------------------KELPLDCNHGLEQKIIIKGQEHWWNELQWDDLSTQNAF 358
                                 K+LPL+ N     +I+I GQ  WWN+++W+D  +Q   
Sbjct: 826 IFWKALPFIYLNTIYVDSCPLLKKLPLNANSAKGHRIVISGQTEWWNKVEWEDELSQGTP 885

Query: 359 LP 360
            P
Sbjct: 886 GP 887

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	366
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.674	0.278	0.377	3.7e-34
TAIR|locus:2034765	884	AT1G12290 [Arabidopsis thalian	0.434	0.179	0.440	7.8e-31
TAIR|locus:2197739	762	AT1G61300 [Arabidopsis thalian	0.461	0.221	0.488	8e-31
TAIR|locus:2008510	967	AT1G61190 "AT1G61190" [Arabido	0.461	0.174	0.471	2.1e-30
TAIR|locus:2008440	899	AT1G61180 [Arabidopsis thalian	0.461	0.187	0.477	4.2e-30
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.428	0.177	0.468	1.5e-29
TAIR|locus:2153474	874	AT5G05400 [Arabidopsis thalian	0.715	0.299	0.327	2.1e-29
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.461	0.189	0.413	4.4e-27
TAIR|locus:2036214	851	AT1G15890 [Arabidopsis thalian	0.743	0.319	0.341	4.3e-25
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.453	0.185	0.426	6e-25

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 3.7e-34, Sum P(2) = 3.7e-34
 Identities = 99/262 (37%), Positives = 133/262 (50%)

Query:     1 MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRT 60
             M L IAS   K+KENF+V AG+     P I  WK   R+SLM N I+++ + P  P+L T
Sbjct:   478 MALWIASDFGKQKENFIVQAGLQSRNIPEIEKWKVARRVSLMFNNIESIRDAPESPQLIT 537

Query:    61 LFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLP 120
             L L  N LG +S++FF  M  L VL LS NR L +LP  I   VSLQ+L +S T I   P
Sbjct:   538 LLLRKNFLGHISSSFFRLMPMLVVLDLSMNRDLRHLPNEISECVSLQYLSLSRTRIRIWP 597

Query:   121 IELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSXX 180
               L  L  L  LNLEYT  +  I    IS L  L+ LR+F  GF      D  +  +   
Sbjct:   598 AGLVELRKLLYLNLEYTRMVESICG--ISGLTSLKVLRLFVSGF----PEDPCVLNE--- 648

Query:   181 XXXXXXXXXXXXXXTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASL 240
                           TITL     L++ LS  RL S  T+ L + +LN  +S+  F  A++
Sbjct:   649 ----LQLLENLQTLTITLGLASILEQFLSNQRLASC-TRALRIENLNPQSSVISFV-ATM 702

Query:   241 RHLRTLQLYFNDLEELKIDAGE 262
               L+ L    +D+ E+K+   E
Sbjct:   703 DSLQELHFADSDIWEIKVKRNE 724

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 7.8e-31, Sum P(2) = 7.8e-31
 Identities = 71/161 (44%), Positives = 94/161 (58%)

Query:     1 MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRT 60
             M L IAS + K K+N +V AG  L E P +  WK  +RMSL+ N I+ +   P CP+L T
Sbjct:   485 MALWIASDLRKHKDNCIVRAGFRLNEIPKVKDWKVVSRMSLVNNRIKEIHGSPECPKLTT 544

Query:    61 LFLPSN-HLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTL 119
             LFL  N HL  +S  FF SM  L VL LS+N +L  LP  I  LVSL++LD+S++ I  L
Sbjct:   545 LFLQDNRHLVNISGEFFRSMPRLVVLDLSWNVNLSGLPDQISELVSLRYLDLSYSSIGRL 604

Query:   120 PIELKYLVNLKCLNLEYTFRLSRIPQ-QVISDLKMLRALRM 159
             P+ L  L  L  LNLE    L  +     +S+LK +R L +
Sbjct:   605 PVGLLKLKKLMHLNLESMLCLESVSGIDHLSNLKTVRLLNL 645

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2197739 AT1G61300 [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 8.0e-31, Sum P(2) = 8.0e-31
 Identities = 85/174 (48%), Positives = 95/174 (54%)

Query:     1 MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRT 60
             M L IAS   K+KENF+V A VGL E P    W    RMSLM N I+ +T    C  L T
Sbjct:   367 MALWIASDFGKQKENFVVRARVGLHERPEAKDWGAVRRMSLMDNHIEEITCESKCSELTT 426

Query:    61 LFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLP 120
             LFL SN L  +S  F   M  L VL LSYNR    LP  I  LVSLQ LD+S T I  LP
Sbjct:   427 LFLQSNQLKNLSGEFIRYMQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTSIKQLP 486

Query:   121 IELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSIL 174
             + LK L  L  LNL YT RL  I    IS L  LR LR+   G  V  +A S+L
Sbjct:   487 VGLKKLKKLTFLNLAYTVRLCSISG--ISRLLSLRLLRLL--GSKVHGDA-SVL 535

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2008510 AT1G61190 "AT1G61190" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 2.1e-30, Sum P(2) = 2.1e-30
 Identities = 82/174 (47%), Positives = 97/174 (55%)

Query:     1 MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRT 60
             M L IAS   K+KEN++V A VGL E P +  W    RMSLM N I+ +T    C  L T
Sbjct:   482 MALWIASDFGKQKENYVVRARVGLHEIPKVKDWGAVRRMSLMMNEIEEITCESKCSELTT 541

Query:    61 LFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLP 120
             LFL SN L  +S  F   M  L VL LS+N     LP  I  LVSLQ+LD+SWT I  LP
Sbjct:   542 LFLQSNQLKNLSGEFIRYMQKLVVLDLSHNPDFNELPEQISGLVSLQYLDLSWTRIEQLP 601

Query:   121 IELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSIL 174
             + LK L  L  LNL +T RL  I    IS L  LR L + E   NV  +A S+L
Sbjct:   602 VGLKELKKLIFLNLCFTERLCSISG--ISRLLSLRWLSLRES--NVHGDA-SVL 650

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
 Identities = 83/174 (47%), Positives = 96/174 (55%)

Query:     1 MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRT 60
             M L IAS   K+KENF+V AGVGL E P +  W    +MSLM N I+ +T    C  L T
Sbjct:   478 MALWIASDFGKQKENFVVQAGVGLHEIPKVKDWGAVRKMSLMDNDIEEITCESKCSELTT 537

Query:    61 LFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLP 120
             LFL SN L  +   F   M  L VL LSYNR    LP  I  LVSLQ LD+S T I  +P
Sbjct:   538 LFLQSNKLKNLPGAFIRYMQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTSIEHMP 597

Query:   121 IELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSIL 174
             I LK L  L  L+L YT RL  I    IS L  LR LR+   G  V  +A S+L
Sbjct:   598 IGLKELKKLTFLDLTYTDRLCSISG--ISRLLSLRLLRLL--GSKVHGDA-SVL 646

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 1.5e-29, Sum P(2) = 1.5e-29
 Identities = 75/160 (46%), Positives = 88/160 (55%)

Query:     1 MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRT 60
             M L I S + K KE  +V AG+GL E P +  W+   RMSLM N  + +   P C  L T
Sbjct:   483 MALWIFSDLGKHKERCIVQAGIGLDELPEVENWRAVKRMSLMNNNFEKILGSPECVELIT 542

Query:    61 LFLPSNH-LGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTL 119
             LFL +N+ L  +S  FF  M SL VL LS N SL  LP  I  LVSLQ+LD+S T I  L
Sbjct:   543 LFLQNNYKLVDISMEFFRCMPSLAVLDLSENHSLSELPEEISELVSLQYLDLSGTYIERL 602

Query:   120 PIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRM 159
             P  L  L  L  L LE T RL  I    IS L  LR LR+
Sbjct:   603 PHGLHELRKLVHLKLERTRRLESISG--ISYLSSLRTLRL 640

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2153474 AT5G05400 [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 2.1e-29, Sum P(2) = 2.1e-29
 Identities = 94/287 (32%), Positives = 138/287 (48%)

Query:     1 MTLRIASTINKEKE-NFLVL-AGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRL 58
             M L I+S    +K+ N LV+ A   L + P I   K   RMSL+ N I+   E   CP+L
Sbjct:   470 MALWISSGCGDQKQKNVLVVEANAQLRDIPKIEDQKAVRRMSLIYNQIEEACESLHCPKL 529

Query:    59 RTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITT 118
              TL L  N L  +S  F   +  L VL LS N +L  LP     L SL+ L++S TGIT+
Sbjct:   530 ETLLLRDNRLRKISREFLSHVPILMVLDLSLNPNLIELP-SFSPLYSLRFLNLSCTGITS 588

Query:   119 LPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDS 178
             LP  L  L NL  LNLE+T+ L RI +  I DL  L  L+++  G ++    D ++    
Sbjct:   589 LPDGLYALRNLLYLNLEHTYMLKRIYE--IHDLPNLEVLKLYASGIDI---TDKLV---- 639

Query:   179 XXXXXXXXXXXXXXXXTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFA 238
                             TITL++   L+  L   R  S  T+ L L   +   SL V   A
Sbjct:   640 ----RQIQAMKHLYLLTITLRNSSGLEIFLGDTRFSSY-TEGLTLDEQSYYQSLKV-PLA 693

Query:   239 SLRHLRTLQLYFNDLEELKIDAG-----EL--KRIREICGFHSLQKV 278
             ++   R L++  + + +++I+       E+   R+R    F +L+KV
Sbjct:   694 TISSSRFLEIQDSHIPKIEIEGSSSNESEIVGPRVRRDISFINLRKV 740

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 4.4e-27, Sum P(2) = 4.4e-27
 Identities = 72/174 (41%), Positives = 91/174 (52%)

Query:     1 MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRT 60
             M L   S + K KE  +V AG GL + P +  W    R+SLM N I+ ++  P CP L T
Sbjct:   481 MALWTLSDLGKNKERCIVQAGSGLRKVPKVEDWGAVRRLSLMNNGIEEISGSPECPELTT 540

Query:    61 LFLPSNH-LGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTL 119
             LFL  N  L  +S  FF  M  L VL LS N  L+ LP  I  LV+L++LD+S T I  L
Sbjct:   541 LFLQENKSLVHISGEFFRHMRKLVVLDLSENHQLDGLPEQISELVALRYLDLSHTNIEGL 600

Query:   120 PIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSI 173
             P  L+ L  L  LNLE   RL  I    IS L  LR L +     N+ L+  S+
Sbjct:   601 PACLQDLKTLIHLNLECMRRLGSIAG--ISKLSSLRTLGLRNS--NIMLDVMSV 650

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2036214 AT1G15890 [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 4.3e-25, P = 4.3e-25
 Identities = 101/296 (34%), Positives = 142/296 (47%)

Query:     1 MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRT 60
             M L IAS   K+KE   V  GV L   P    W+   RMSLM N I N++     P L T
Sbjct:   480 MALWIASNFGKQKETLCVKPGVQLCHIPKDINWESLRRMSLMCNQIANISSSSNSPNLST 539

Query:    61 LFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLP 120
             L L +N L  +S +FF  M +L VL LS N SL +LP  I  L SLQ++++S TGI  LP
Sbjct:   540 LLLQNNKLVHISCDFFRFMPALVVLDLSRNSSLSSLPEAISKLGSLQYINLSTTGIKWLP 599

Query:   121 IELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSXX 180
             +  K L  L  LNLE+T  L  I   + + L  L+ L++F     ++    S++  +   
Sbjct:   600 VSFKELKKLIHLNLEFTDELESIVG-IATSLPNLQVLKLFSSRVCID---GSLM--EELL 653

Query:   181 XXXXXXXXXXXXXXTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASL 240
                            + L+S   + RL+S       S Q LCLR  N S  + +    +L
Sbjct:   654 LLEHLKVLTATIKDALILESIQGVDRLVS-------SIQALCLR--NMSAPVIILNTVAL 704

Query:   241 RHLRTLQLYFNDLEELKID-----AGELKRIREICGFHSLQKVFYKILKIEA-RDM 290
               L+ L++  + + E+KID      GELK      GF  L  V  +I  +E  RD+
Sbjct:   705 GGLQHLEIVGSKISEIKIDWERKGRGELK-CTSSPGFKHLSVV--EIFNLEGPRDL 757

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 6.0e-25, P = 6.0e-25
 Identities = 72/169 (42%), Positives = 98/169 (57%)

Query:     1 MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRT 60
             M L IAS + + KE  +V  GVGL E P +  W    RMSLM+N I+ L+  P C  L T
Sbjct:   483 MALWIASDLGEHKERCIVQVGVGLREVPKVKNWSSVRRMSLMENEIEILSGSPECLELTT 542

Query:    61 LFLPSNH-LGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTL 119
             LFL  N  L  +S+ FF  +  L VL LS N SL  LP  I  LVSL++LD+SWT I  L
Sbjct:   543 LFLQKNDSLLHISDEFFRCIPMLVVLDLSGNSSLRKLPNQISKLVSLRYLDLSWTYIKRL 602

Query:   120 PIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVEL 168
             P+ L+ L  L+ L L+Y  RL  I    IS++  LR L++ +   ++++
Sbjct:   603 PVGLQELKKLRYLRLDYMKRLKSISG--ISNISSLRKLQLLQSKMSLDM 649

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XIII000034 cc-nbs-lrr resistance protein (820 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	366
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.2 bits (108), Expect = 8e-07
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 57  RLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF-NLVSLQHLDISWTG 115
            L++L L +N L  + +  F  + +L+VL LS N +L ++    F  L SL+ LD+S   
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGN-NLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 116 I 116
           +
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 81  SLRVLILSYNRSLENLPLGIF-NLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYT 137
           +L+ L LS NR L  +P G F  L +L+ LD+S   +T++  E    L +L+ L+L   
Sbjct: 1   NLKSLDLSNNR-LTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	366
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.9
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.9
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.89
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.87
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.81
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.8
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.77
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.76
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.75
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.72
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.67
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.65
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.64
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.64
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.6
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.59
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.55
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.53
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.49
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.46
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.44
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.43
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.26
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.23
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.22
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.2
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.14
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.06
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.99
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.88
KOG4341	483	consensus F-box protein containing LRR [General fu	98.84
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.83
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.81
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.78
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.74
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.73
KOG4341	483	consensus F-box protein containing LRR [General fu	98.68
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.68
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.65
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.63
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.62
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.58
PLN03150	623	hypothetical protein; Provisional	98.53
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.49
PLN03150	623	hypothetical protein; Provisional	98.46
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.45
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.41
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.4
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.34
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.01
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.99
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.98
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.96
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.94
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.86
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.86
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.78
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.74
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.67
PRK15386	426	type III secretion protein GogB; Provisional	97.66
PRK15386	426	type III secretion protein GogB; Provisional	97.49
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.49
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.43
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.28
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.1
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.03
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.96
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.81
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.54
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.32
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.47
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.88
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.8
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.39
smart00370	26	LRR Leucine-rich repeats, outliers.	91.65
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.65
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.76
KOG4308	478	consensus LRR-containing protein [Function unknown	85.84
KOG0473	326	consensus Leucine-rich repeat protein [Function un	82.69
KOG0473	326	consensus Leucine-rich repeat protein [Function un	82.42

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.90  E-value=3.2e-23  Score=215.67  Aligned_cols=182  Identities=22%  Similarity=0.260  Sum_probs=127.3

Q ss_pred             eeeeccC-cCCccEEEecCCCcccC--CCCCCCCcccEEEcccCCccc-cCCC--CCCCCccEEEccCCCCc-cccchhh
Q 038551            4 RIASTIN-KEKENFLVLAGVGLTEA--PSIGMWKETTRMSLMQNAIQN-LTEI--PTCPRLRTLFLPSNHLG-TVSNNFF   76 (366)
Q Consensus         4 ~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~-l~~~--~~~~~L~~L~l~~~~~~-~i~~~~~   76 (366)
                      |-++.|. ......+++.++++...  +.+..+++|+.|++++|.+.. +|..  ..+.+|++|++++|.+. .+|.   
T Consensus        60 w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---  136 (968)
T PLN00113         60 WQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---  136 (968)
T ss_pred             CcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---
Confidence            4444443 24556667777776655  457788999999999998874 6655  47888888888888775 3443   


Q ss_pred             cCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccccccc-cccccccCCCCCCEEEcccccccCccChhhhcCCcCCc
Q 038551           77 HSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGIT-TLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLR  155 (366)
Q Consensus        77 ~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  155 (366)
                      ..+++|++|++++|...+.+|..++++++|++|++++|.+. .+|..+.++++|++|++++|...+.+|.. +.++++|+
T Consensus       137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~  215 (968)
T PLN00113        137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLK  215 (968)
T ss_pred             cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCcc
Confidence            34677888888877555567777777788888888777665 56666777777888888776666666665 67777777


Q ss_pred             EEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccch
Q 038551          156 ALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFG  202 (366)
Q Consensus       156 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  202 (366)
                      +|++.+|.+.+             ..+..+..+++|+.|++++|...
T Consensus       216 ~L~L~~n~l~~-------------~~p~~l~~l~~L~~L~L~~n~l~  249 (968)
T PLN00113        216 WIYLGYNNLSG-------------EIPYEIGGLTSLNHLDLVYNNLT  249 (968)
T ss_pred             EEECcCCccCC-------------cCChhHhcCCCCCEEECcCceec
Confidence            77777777765             44555666666666666666554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.90  E-value=1.5e-22  Score=210.61  Aligned_cols=152  Identities=26%  Similarity=0.317  Sum_probs=95.3

Q ss_pred             CccEEEecCCCcc-cCCC--CCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCc-cccchhhcCCCCCCEEEcc
Q 038551           13 KENFLVLAGVGLT-EAPS--IGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLG-TVSNNFFHSMASLRVLILS   88 (366)
Q Consensus        13 ~~~~~~~~~~~~~-~~~~--~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~-~i~~~~~~~l~~L~~L~l~   88 (366)
                      ..+.+++.++.+. .+|.  +.++++|++|++++|.+.+..+...+++|++|++++|.+. .+|.. ++.+++|++|+++
T Consensus        94 ~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~  172 (968)
T PLN00113         94 YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLG  172 (968)
T ss_pred             CCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChH-HhcCCCCCEEECc
Confidence            4556666666665 3432  3366777777777777765333345667777777777664 34444 6667777777777


Q ss_pred             CCCCCCCcchhhcCCCCCcEEEccccccc-cccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccc
Q 038551           89 YNRSLENLPLGIFNLVSLQHLDISWTGIT-TLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV  166 (366)
Q Consensus        89 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  166 (366)
                      +|...+.+|..++++++|++|++++|.+. .+|..++++++|++|++++|+..+.+|.. +.++++|++|++.+|.+.+
T Consensus       173 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~  250 (968)
T PLN00113        173 GNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTG  250 (968)
T ss_pred             cCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceecc
Confidence            76444566666666777777777766654 45666666666666666665555555554 5666666666666666554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.89  E-value=2e-24  Score=197.60  Aligned_cols=299  Identities=18%  Similarity=0.196  Sum_probs=179.3

Q ss_pred             EEEecCCCcccC--CCCCCCCcccEEEcccCCccccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCC
Q 038551           16 FLVLAGVGLTEA--PSIGMWKETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRS   92 (366)
Q Consensus        16 ~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~   92 (366)
                      .+++.++.+.++  ..+.++++|+.+++.+|.++.+|.. ....+|+.|++.+|.|+++....+..++.|+.|||+.| .
T Consensus        82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~  160 (873)
T KOG4194|consen   82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-L  160 (873)
T ss_pred             eeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-h
Confidence            356677777766  3456777788888877777777776 55566777777777777666655666777777777777 6


Q ss_pred             CCCcc-hhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcccc--c
Q 038551           93 LENLP-LGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVE--L  168 (366)
Q Consensus        93 ~~~l~-~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~  168 (366)
                      +..+| ..+..-.++++|+|++|.++.+..+ +.++.+|-.|.+++ |.++.+|...|.+++.|+.|++.+|.+.-.  .
T Consensus       161 is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~irive~l  239 (873)
T KOG4194|consen  161 ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL  239 (873)
T ss_pred             hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence            66555 2344445677777777777665443 56666666666666 566666655566666666666666655431  1


Q ss_pred             cccccccCCch---------hhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhcc
Q 038551          169 EADSILFGDSE---------VLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFAS  239 (366)
Q Consensus       169 ~~~~~~~~~~~---------~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~  239 (366)
                      .|.+.++.+.-         -.-..+..+.++++|+++.|....+..- -+..+..|+...|+.+.+..+...   ++.-
T Consensus       240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g-~lfgLt~L~~L~lS~NaI~rih~d---~Wsf  315 (873)
T KOG4194|consen  240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG-WLFGLTSLEQLDLSYNAIQRIHID---SWSF  315 (873)
T ss_pred             hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcc-cccccchhhhhccchhhhheeecc---hhhh
Confidence            22222111100         1122344566677777777766654321 144455533344444443333333   3566


Q ss_pred             CCcCcEEEeccCccceEeccccccccccccCCCCCcceeeee--------------cccceeEEeeccCc----------
Q 038551          240 LRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYK--------------ILKIEARDMACTCS----------  295 (366)
Q Consensus       240 ~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~--------------l~~l~~L~l~~~c~----------  295 (366)
                      +++|++|+++.|.++.++...+        ..+..|+.|.++              +.+++.|+++ ...          
T Consensus       316 tqkL~~LdLs~N~i~~l~~~sf--------~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr-~N~ls~~IEDaa~  386 (873)
T KOG4194|consen  316 TQKLKELDLSSNRITRLDEGSF--------RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR-SNELSWCIEDAAV  386 (873)
T ss_pred             cccceeEeccccccccCChhHH--------HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCc-CCeEEEEEecchh
Confidence            7777777777777777765444        335556666655              3344444444 221          


Q ss_pred             cccccccccceEEeecCc--------ccCCcccccccCCCCCC
Q 038551          296 QYQACPRGLTKFEEHPLK--------RLECAELKELPLDCNHG  330 (366)
Q Consensus       296 ~l~~~~~~L~~L~l~~~~--------~~~~~~L~~L~l~~n~~  330 (366)
                      .+..+|. |+.|++.||.        ..+++.|+.|++.+|.+
T Consensus       387 ~f~gl~~-LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai  428 (873)
T KOG4194|consen  387 AFNGLPS-LRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI  428 (873)
T ss_pred             hhccchh-hhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence            1112677 8888888887        56777888888888765

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.87  E-value=3.2e-23  Score=189.79  Aligned_cols=220  Identities=20%  Similarity=0.215  Sum_probs=158.9

Q ss_pred             cEEEecCCCcccCC--CCCC--CCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEcc
Q 038551           15 NFLVLAGVGLTEAP--SIGM--WKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILS   88 (366)
Q Consensus        15 ~~~~~~~~~~~~~~--~~~~--~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~   88 (366)
                      ..+.|.+.++..+.  .+.+  .+..+.|++++|.+..+...  .++++|+.+++..|.+..||.. .+...+|+.|+|.
T Consensus        55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f-~~~sghl~~L~L~  133 (873)
T KOG4194|consen   55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRF-GHESGHLEKLDLR  133 (873)
T ss_pred             eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccc-cccccceeEEeee
Confidence            34566666665541  1111  24567799999999986555  8999999999999999999985 5667779999999


Q ss_pred             CCCCCCCc-chhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccc
Q 038551           89 YNRSLENL-PLGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV  166 (366)
Q Consensus        89 ~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  166 (366)
                      +| .+..+ .+.+..++.|+.|||+.|.++++|.. +..-.++++|++++ |.++.+..+.|..+.+|-.|.+++|.++.
T Consensus       134 ~N-~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkLsrNritt  211 (873)
T KOG4194|consen  134 HN-LISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKLSRNRITT  211 (873)
T ss_pred             cc-ccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc-ccccccccccccccchheeeecccCcccc
Confidence            99 66655 46688899999999999999988864 55568899999999 78888887778999999999999999986


Q ss_pred             cccccccccCCchhhhhhhhcCcccceeeeccccchhhH--hHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCc
Q 038551          167 ELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQ--RLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLR  244 (366)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~  244 (366)
                                   -....+.++++|+.|++..|.+....  .+..+.++++|++.+-+++   .+.+..   |-.+.+++
T Consensus       212 -------------Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~---kL~DG~---Fy~l~kme  272 (873)
T KOG4194|consen  212 -------------LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS---KLDDGA---FYGLEKME  272 (873)
T ss_pred             -------------cCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc---cccCcc---eeeecccc
Confidence                         55677788999999999988776432  2222333444333333332   233332   44455555


Q ss_pred             EEEeccCccceE
Q 038551          245 TLQLYFNDLEEL  256 (366)
Q Consensus       245 ~L~l~~~~l~~l  256 (366)
                      +|+++.|++..+
T Consensus       273 ~l~L~~N~l~~v  284 (873)
T KOG4194|consen  273 HLNLETNRLQAV  284 (873)
T ss_pred             eeecccchhhhh
Confidence            555555544443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.81  E-value=5.8e-22  Score=183.05  Aligned_cols=283  Identities=23%  Similarity=0.335  Sum_probs=193.2

Q ss_pred             ccEEEecCCCcccCC-CCCCCCcccEEEcccCCccccCCC-CCCCCccEEEccCCCCc--cccchhhcCCCCCCEEEccC
Q 038551           14 ENFLVLAGVGLTEAP-SIGMWKETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLG--TVSNNFFHSMASLRVLILSY   89 (366)
Q Consensus        14 ~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~--~i~~~~~~~l~~L~~L~l~~   89 (366)
                      .+++.+...++..+| .++.+.+|++|.+.+|++..+... +.++.||.+++..|+++  .||+++| .+..|.+|||++
T Consensus        34 ~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLSh  112 (1255)
T KOG0444|consen   34 MTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSH  112 (1255)
T ss_pred             eeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecch
Confidence            457777777888885 578888899999988888886555 78888888888888774  6888844 688899999999


Q ss_pred             CCCCCCcchhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccc
Q 038551           90 NRSLENLPLGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVEL  168 (366)
Q Consensus        90 ~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  168 (366)
                      | .+++.|..+.+.+++.+|+|++|++.++|.. +-++..|-.||+++ +.+..+|.. +..+..|+.|.+++|.+.-  
T Consensus       113 N-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~h--  187 (1255)
T KOG0444|consen  113 N-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQ-IRRLSMLQTLKLSNNPLNH--  187 (1255)
T ss_pred             h-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHH-HHHHhhhhhhhcCCChhhH--
Confidence            8 7888888888888888899999888888876 57888888888888 788888887 8888888888888888764  


Q ss_pred             cccccccCCchhhhhhhhcCcccceeeeccccchh--hH-hHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcE
Q 038551          169 EADSILFGDSEVLVEELLVLKHLNLLTITLQSFGA--LQ-RLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRT  245 (366)
Q Consensus       169 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~-~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~  245 (366)
                                 .....+.+++.|+.|.+++.+-+.  +| ++..+.+++     .++++..+ +...+ ..+..+++|+.
T Consensus       188 -----------fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~-----dvDlS~N~-Lp~vP-ecly~l~~Lrr  249 (1255)
T KOG0444|consen  188 -----------FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLR-----DVDLSENN-LPIVP-ECLYKLRNLRR  249 (1255)
T ss_pred             -----------HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhh-----hccccccC-CCcch-HHHhhhhhhhe
Confidence                       666777777777777777654432  22 222233322     24443321 11111 22556677777


Q ss_pred             EEeccCccceEeccccccccccccCCCCCcceeeee-------------cccc-------eeEEeeccCc-ccccccccc
Q 038551          246 LQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYK-------------ILKI-------EARDMACTCS-QYQACPRGL  304 (366)
Q Consensus       246 L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~-------------l~~l-------~~L~l~~~c~-~l~~~~~~L  304 (366)
                      |++++|.++++....         ....+|+.|+++             ++.+       ..|+.. +.+ .+..+.+ |
T Consensus       250 LNLS~N~iteL~~~~---------~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~Fe-GiPSGIGKL~~-L  318 (1255)
T KOG0444|consen  250 LNLSGNKITELNMTE---------GEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFE-GIPSGIGKLIQ-L  318 (1255)
T ss_pred             eccCcCceeeeeccH---------HHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccccc-CCccchhhhhh-h
Confidence            777777777665433         224455555554             1111       223333 332 2333445 6


Q ss_pred             ceEEeecCc-------ccCCcccccccCCCCCCC
Q 038551          305 TKFEEHPLK-------RLECAELKELPLDCNHGL  331 (366)
Q Consensus       305 ~~L~l~~~~-------~~~~~~L~~L~l~~n~~~  331 (366)
                      +++...+|.       +..|+.|+.|.++.|++.
T Consensus       319 evf~aanN~LElVPEglcRC~kL~kL~L~~NrLi  352 (1255)
T KOG0444|consen  319 EVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI  352 (1255)
T ss_pred             HHHHhhccccccCchhhhhhHHHHHhccccccee
Confidence            666666665       667888888888888754

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.80  E-value=1.2e-19  Score=181.96  Aligned_cols=240  Identities=41%  Similarity=0.544  Sum_probs=187.9

Q ss_pred             CceeeeeccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCC--CccccchhhcC
Q 038551            1 MTLRIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNH--LGTVSNNFFHS   78 (366)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~--~~~i~~~~~~~   78 (366)
                      ||+|++++.-++++..++-.+.++.++|....+...+++++.++.+..++....+++|++|-+..|.  +..++..+|..
T Consensus       490 ~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~  569 (889)
T KOG4658|consen  490 MALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRS  569 (889)
T ss_pred             HHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhh
Confidence            7899999888888888888888888899999999999999999999998888888899999999995  77888888999


Q ss_pred             CCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEE
Q 038551           79 MASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALR  158 (366)
Q Consensus        79 l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  158 (366)
                      ++.|++||+++|...+.+|+.++++.+||||+++++.+..+|.+++++++|.+|++..+.....++.. ...+++|++|.
T Consensus       570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i-~~~L~~Lr~L~  648 (889)
T KOG4658|consen  570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGI-LLELQSLRVLR  648 (889)
T ss_pred             CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccch-hhhcccccEEE
Confidence            99999999999988899999999999999999999999999999999999999999987666666443 66799999999


Q ss_pred             eecCCccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhc
Q 038551          159 MFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFA  238 (366)
Q Consensus       159 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~  238 (366)
                      +.......           +......+..+++|+.+.........+..+.....+.. ....+.+..+..  .....++.
T Consensus       649 l~~s~~~~-----------~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~-~~~~l~~~~~~~--~~~~~~~~  714 (889)
T KOG4658|consen  649 LPRSALSN-----------DKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRS-LLQSLSIEGCSK--RTLISSLG  714 (889)
T ss_pred             eecccccc-----------chhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHH-HhHhhhhccccc--ceeecccc
Confidence            98776332           34666777788888888876544422233323333332 222333222111  22223477


Q ss_pred             cCCcCcEEEeccCccce
Q 038551          239 SLRHLRTLQLYFNDLEE  255 (366)
Q Consensus       239 ~~~~L~~L~l~~~~l~~  255 (366)
                      .+.+|+.|.+.+|...+
T Consensus       715 ~l~~L~~L~i~~~~~~e  731 (889)
T KOG4658|consen  715 SLGNLEELSILDCGISE  731 (889)
T ss_pred             cccCcceEEEEcCCCch
Confidence            88999999999986543

>PLN03210 Resistant to P

Probab=99.77  E-value=6e-18  Score=177.40  Aligned_cols=202  Identities=20%  Similarity=0.261  Sum_probs=123.5

Q ss_pred             cccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcccc
Q 038551           35 ETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWT  114 (366)
Q Consensus        35 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~  114 (366)
                      +|+.|.+.++.+..+|......+|+.|++.++.+..++.+ +..+++|+.++++++..++.+|. +..+++|++|++.+|
T Consensus       590 ~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c  667 (1153)
T PLN03210        590 KLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDC  667 (1153)
T ss_pred             ccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCC
Confidence            4566666666666666554556777777777777777666 56777788888777655666664 667777888888776


Q ss_pred             -ccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccce
Q 038551          115 -GITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNL  193 (366)
Q Consensus       115 -~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  193 (366)
                       .+..+|..+..+++|+.|++++|+.++.+|.. + ++++|+.|++.+|....             .++..   ..+|+.
T Consensus       668 ~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~-------------~~p~~---~~nL~~  729 (1153)
T PLN03210        668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLK-------------SFPDI---STNISW  729 (1153)
T ss_pred             CCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCcc-------------ccccc---cCCcCe
Confidence             55677777777788888888877777777764 3 67777777777775432             11111   245566


Q ss_pred             eeeccccchhhHhHhhhcccCcc--------------------------cceeeeccccCCCCCcchhhhccCCcCcEEE
Q 038551          194 LTITLQSFGALQRLLSYCRLGSI--------------------------STQCLCLRHLNNSNSLSVFAFASLRHLRTLQ  247 (366)
Q Consensus       194 L~l~~~~~~~~~~l~~~~~l~~l--------------------------~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~  247 (366)
                      |++.++.+..+|....+.++..|                          .+..|++.++......+ ..+..+++|+.|+
T Consensus       730 L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP-~si~~L~~L~~L~  808 (1153)
T PLN03210        730 LDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP-SSIQNLHKLEHLE  808 (1153)
T ss_pred             eecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC-hhhhCCCCCCEEE
Confidence            66666655554432222222211                          23334444443332222 2355666677777


Q ss_pred             eccC-ccceEe
Q 038551          248 LYFN-DLEELK  257 (366)
Q Consensus       248 l~~~-~l~~l~  257 (366)
                      +++| .++.+|
T Consensus       809 Ls~C~~L~~LP  819 (1153)
T PLN03210        809 IENCINLETLP  819 (1153)
T ss_pred             CCCCCCcCeeC
Confidence            7666 566554

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.76  E-value=1.3e-20  Score=174.27  Aligned_cols=282  Identities=20%  Similarity=0.258  Sum_probs=216.1

Q ss_pred             EEEecCCCcccC--C-CCCCCCcccEEEcccCCccccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCC
Q 038551           16 FLVLAGVGLTEA--P-SIGMWKETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR   91 (366)
Q Consensus        16 ~~~~~~~~~~~~--~-~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~   91 (366)
                      -+++.+++++.-  | +...++.++.|.+.+..+..+|.. +++.+|+.|.+++|++..+... +..++.|+.++++.|+
T Consensus        11 GvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv~~R~N~   89 (1255)
T KOG0444|consen   11 GVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLRSVIVRDNN   89 (1255)
T ss_pred             cccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhHHHhhhccc
Confidence            456677777743  3 466788999999999999999988 9999999999999999888777 8889999999999883


Q ss_pred             C-CCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccc
Q 038551           92 S-LENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEA  170 (366)
Q Consensus        92 ~-~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  170 (366)
                      . ...+|..+..+..|..|||++|++++.|..+...+++-+|++++ +.+..+|..++.+++.|-.|++++|.+.     
T Consensus        90 LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~NrLe-----  163 (1255)
T KOG0444|consen   90 LKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNNRLE-----  163 (1255)
T ss_pred             cccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccchhh-----
Confidence            3 23688888899999999999999999999999999999999999 7999999998999999999999999986     


Q ss_pred             cccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEecc
Q 038551          171 DSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYF  250 (366)
Q Consensus       171 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~  250 (366)
                               ..+..+..+.+|+.|.+++|....+ .+..++++++|++.+  .++-.....--..++..+.+|..++++.
T Consensus       164 ---------~LPPQ~RRL~~LqtL~Ls~NPL~hf-QLrQLPsmtsL~vLh--ms~TqRTl~N~Ptsld~l~NL~dvDlS~  231 (1255)
T KOG0444|consen  164 ---------MLPPQIRRLSMLQTLKLSNNPLNHF-QLRQLPSMTSLSVLH--MSNTQRTLDNIPTSLDDLHNLRDVDLSE  231 (1255)
T ss_pred             ---------hcCHHHHHHhhhhhhhcCCChhhHH-HHhcCccchhhhhhh--cccccchhhcCCCchhhhhhhhhccccc
Confidence                     7888999999999999999987754 344566666644433  3332221111113477889999999999


Q ss_pred             CccceEeccccccccccccCCCCCcceeeeecccceeEEeeccCccccccccccceEEeecCc-------ccCCcccccc
Q 038551          251 NDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLK-------RLECAELKEL  323 (366)
Q Consensus       251 ~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~-------~~~~~~L~~L  323 (366)
                      |++..+|...         ..+++|+.|+++-..++.|.+.     ...-.+ |+.|+++.|.       +-.++.|++|
T Consensus       232 N~Lp~vPecl---------y~l~~LrrLNLS~N~iteL~~~-----~~~W~~-lEtLNlSrNQLt~LP~avcKL~kL~kL  296 (1255)
T KOG0444|consen  232 NNLPIVPECL---------YKLRNLRRLNLSGNKITELNMT-----EGEWEN-LETLNLSRNQLTVLPDAVCKLTKLTKL  296 (1255)
T ss_pred             cCCCcchHHH---------hhhhhhheeccCcCceeeeecc-----HHHHhh-hhhhccccchhccchHHHhhhHHHHHH
Confidence            9999988655         4578888888873233333322     111334 6666666665       4455566666


Q ss_pred             cCCCCCCC
Q 038551          324 PLDCNHGL  331 (366)
Q Consensus       324 ~l~~n~~~  331 (366)
                      ...+|++.
T Consensus       297 y~n~NkL~  304 (1255)
T KOG0444|consen  297 YANNNKLT  304 (1255)
T ss_pred             HhccCccc
Confidence            66666544

>PLN03210 Resistant to P

Probab=99.75  E-value=6.9e-17  Score=169.49  Aligned_cols=282  Identities=21%  Similarity=0.189  Sum_probs=190.9

Q ss_pred             CCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC-CCCCCccEEEccCC-CCccccchhhcCCCCCCEEEccC
Q 038551           12 EKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSN-HLGTVSNNFFHSMASLRVLILSY   89 (366)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~-~~~~i~~~~~~~l~~L~~L~l~~   89 (366)
                      .+.+.+.+.++.+..+|..-.+.+|+.|++.++.+..++.. ..+++|+.++++++ .+..+|.  +..+++|+.|++++
T Consensus       589 ~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~  666 (1153)
T PLN03210        589 PKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSD  666 (1153)
T ss_pred             cccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecC
Confidence            34667777888888887766789999999999999998776 78999999999987 5677775  77899999999999


Q ss_pred             CCCCCCcchhhcCCCCCcEEEcccc-ccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccc
Q 038551           90 NRSLENLPLGIFNLVSLQHLDISWT-GITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVEL  168 (366)
Q Consensus        90 ~~~~~~l~~~~~~l~~L~~L~l~~~-~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  168 (366)
                      |..+..+|..++++++|++|++++| .++.+|..+ ++++|+.|++++|..+..+|..    ..+|++|++.+|.+....
T Consensus       667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~lP  741 (1153)
T PLN03210        667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIEEFP  741 (1153)
T ss_pred             CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCcccccc
Confidence            9788899999999999999999998 678888765 7899999999999877777642    357888888888765311


Q ss_pred             cc---cccc---cCC--chhh--------hhhhhcCcccceeeeccccch-hhHhHhhhcccCcccceeeeccccCCCCC
Q 038551          169 EA---DSIL---FGD--SEVL--------VEELLVLKHLNLLTITLQSFG-ALQRLLSYCRLGSISTQCLCLRHLNNSNS  231 (366)
Q Consensus       169 ~~---~~~~---~~~--~~~~--------~~~l~~l~~L~~L~l~~~~~~-~~~~l~~~~~l~~l~l~~L~~~~~~~~~~  231 (366)
                      ..   ....   ...  ....        .......+.|+.|++++|... .+|..  +.++++  +..|++.+|..+..
T Consensus       742 ~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s--i~~L~~--L~~L~Ls~C~~L~~  817 (1153)
T PLN03210        742 SNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS--IQNLHK--LEHLEIENCINLET  817 (1153)
T ss_pred             ccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh--hhCCCC--CCEEECCCCCCcCe
Confidence            00   0000   000  0000        000112356777777766432 33321  334443  56677777766554


Q ss_pred             cchhhhccCCcCcEEEeccC-ccceEeccccccccccccCCCCCcceeeee-------------cccceeEEeeccCccc
Q 038551          232 LSVFAFASLRHLRTLQLYFN-DLEELKIDAGELKRIREICGFHSLQKVFYK-------------ILKIEARDMACTCSQY  297 (366)
Q Consensus       232 ~~~~~l~~~~~L~~L~l~~~-~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~-------------l~~l~~L~l~~~c~~l  297 (366)
                      .+.  ...+++|+.|++++| .+..++            ...++|+.|+++             ++.++.|++. +|.++
T Consensus       818 LP~--~~~L~sL~~L~Ls~c~~L~~~p------------~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~-~C~~L  882 (1153)
T PLN03210        818 LPT--GINLESLESLDLSGCSRLRTFP------------DISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMN-GCNNL  882 (1153)
T ss_pred             eCC--CCCccccCEEECCCCCcccccc------------ccccccCEeECCCCCCccChHHHhcCCCCCEEECC-CCCCc
Confidence            431  225778888888888 666554            223456666554             3344666677 77666


Q ss_pred             cc-------cccccceEEeecCcccCCcccccccC
Q 038551          298 QA-------CPRGLTKFEEHPLKRLECAELKELPL  325 (366)
Q Consensus       298 ~~-------~~~~L~~L~l~~~~~~~~~~L~~L~l  325 (366)
                      +.       ++. |+.+++     ..|++|..+.+
T Consensus       883 ~~l~~~~~~L~~-L~~L~l-----~~C~~L~~~~l  911 (1153)
T PLN03210        883 QRVSLNISKLKH-LETVDF-----SDCGALTEASW  911 (1153)
T ss_pred             CccCcccccccC-CCeeec-----CCCcccccccC
Confidence            55       334 666665     44455544443

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.72  E-value=3.1e-20  Score=163.45  Aligned_cols=151  Identities=28%  Similarity=0.346  Sum_probs=81.7

Q ss_pred             CCcccEEEcccCCccccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEc
Q 038551           33 WKETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDI  111 (366)
Q Consensus        33 ~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l  111 (366)
                      +.++..+++.+|.+..+|+. -.++.|+.++...|.+..+|+. ++.+.+|..|++..| .+..+| .|+++..|.++++
T Consensus       159 ~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~-lg~l~~L~~LyL~~N-ki~~lP-ef~gcs~L~Elh~  235 (565)
T KOG0472|consen  159 LSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPE-LGGLESLELLYLRRN-KIRFLP-EFPGCSLLKELHV  235 (565)
T ss_pred             HHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChh-hcchhhhHHHHhhhc-ccccCC-CCCccHHHHHHHh
Confidence            33334444444444443333 2344444455444444555554 444555555555555 455555 2555555555555


Q ss_pred             ccccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcc
Q 038551          112 SWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKH  190 (366)
Q Consensus       112 ~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  190 (366)
                      +.|.++.+|.. ...+.++.+||+.. +.+.+.|.+ +..+.+|+.|++++|.++              ..+..++++ +
T Consensus       236 g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde-~clLrsL~rLDlSNN~is--------------~Lp~sLgnl-h  298 (565)
T KOG0472|consen  236 GENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDE-ICLLRSLERLDLSNNDIS--------------SLPYSLGNL-H  298 (565)
T ss_pred             cccHHHhhHHHHhcccccceeeeccc-cccccCchH-HHHhhhhhhhcccCCccc--------------cCCcccccc-e
Confidence            55555555544 23556666666666 566666665 555566666666666665              456666667 7


Q ss_pred             cceeeeccccchh
Q 038551          191 LNLLTITLQSFGA  203 (366)
Q Consensus       191 L~~L~l~~~~~~~  203 (366)
                      |+.|.+.+|....
T Consensus       299 L~~L~leGNPlrT  311 (565)
T KOG0472|consen  299 LKFLALEGNPLRT  311 (565)
T ss_pred             eeehhhcCCchHH
Confidence            7777777765543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.67  E-value=4.2e-18  Score=149.80  Aligned_cols=322  Identities=21%  Similarity=0.185  Sum_probs=206.4

Q ss_pred             eeccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCC
Q 038551            6 ASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLR   83 (366)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~   83 (366)
                      +|.|..-+-..+.|.+.|+.+||.-.. +..+.+++..|+|+.+|+.  ..+++||.|++++|.|..|.+++|..++.|.
T Consensus        40 pC~Cs~~~g~~VdCr~~GL~eVP~~LP-~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~  118 (498)
T KOG4237|consen   40 PCTCSDVEGGIVDCRGKGLTEVPANLP-PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLL  118 (498)
T ss_pred             CcccCCCCCceEEccCCCcccCcccCC-CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhh
Confidence            378887667888999999999975432 6778899999999999987  8899999999999999999999999999988


Q ss_pred             EEEccCCCCCCCcch-hhcCCCCCcEEEccccccccccc-cccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeec
Q 038551           84 VLILSYNRSLENLPL-GIFNLVSLQHLDISWTGITTLPI-ELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFE  161 (366)
Q Consensus        84 ~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  161 (366)
                      .|.+.++..++.+|. .|+++..|+.|.+..|++..++. .+..+++|..|.+.+ +.+..++.+.+..+.+++.+++..
T Consensus       119 ~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~  197 (498)
T KOG4237|consen  119 SLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQ  197 (498)
T ss_pred             HHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhc
Confidence            888777448999984 58899999999999999986655 488999999999999 788888887788999999999988


Q ss_pred             CCccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCC
Q 038551          162 CGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLR  241 (366)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~  241 (366)
                      |.+..-=...+..+. ....+-.++...-..-..+.+..+.+.+.-.....+++ ....+.. .+......+..-|.+++
T Consensus       198 np~icdCnL~wla~~-~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~es-l~s~~~~-~d~~d~~cP~~cf~~L~  274 (498)
T KOG4237|consen  198 NPFICDCNLPWLADD-LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLES-LPSRLSS-EDFPDSICPAKCFKKLP  274 (498)
T ss_pred             CccccccccchhhhH-HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHh-HHHhhcc-ccCcCCcChHHHHhhcc
Confidence            774320000000000 00111111111112222222222222211111111111 0001111 11111222223477889


Q ss_pred             cCcEEEeccCccceEeccccccccccccCCCCCcceeeeecccceeEEeeccCccccccccccceEEeecCc--------
Q 038551          242 HLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLK--------  313 (366)
Q Consensus       242 ~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~--------  313 (366)
                      +|++|++++|.++.+...++        .....+++|.+.-.+++.++-    .-+..+.. |+.|+|.+|+        
T Consensus       275 ~L~~lnlsnN~i~~i~~~aF--------e~~a~l~eL~L~~N~l~~v~~----~~f~~ls~-L~tL~L~~N~it~~~~~a  341 (498)
T KOG4237|consen  275 NLRKLNLSNNKITRIEDGAF--------EGAAELQELYLTRNKLEFVSS----GMFQGLSG-LKTLSLYDNQITTVAPGA  341 (498)
T ss_pred             cceEeccCCCccchhhhhhh--------cchhhhhhhhcCcchHHHHHH----Hhhhcccc-ceeeeecCCeeEEEeccc
Confidence            99999999999988765443        345556666554111111100    01111344 8888888888        


Q ss_pred             ccCCcccccccCCCCCCCCceEEEeechhcccc
Q 038551          314 RLECAELKELPLDCNHGLEQKIIIKGQEHWWNE  346 (366)
Q Consensus       314 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  346 (366)
                      .....+|.+|++-+|++..+.. ..+-.+|.++
T Consensus       342 F~~~~~l~~l~l~~Np~~CnC~-l~wl~~Wlr~  373 (498)
T KOG4237|consen  342 FQTLFSLSTLNLLSNPFNCNCR-LAWLGEWLRK  373 (498)
T ss_pred             ccccceeeeeehccCcccCccc-hHHHHHHHhh
Confidence            5567788889999998865532 2344455443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.65  E-value=8.8e-16  Score=151.33  Aligned_cols=257  Identities=21%  Similarity=0.176  Sum_probs=169.4

Q ss_pred             eccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEE
Q 038551            7 STINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLI   86 (366)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~   86 (366)
                      ++|-+.+...+++..+++..+|.-- .++|+.|++.+|.++.+|.  ..++|++|++++|.+..+|..    .++|+.|+
T Consensus       196 ~~Cl~~~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~l----p~sL~~L~  268 (788)
T PRK15387        196 RACLNNGNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVL----PPGLLELS  268 (788)
T ss_pred             HHHhcCCCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCcccCc----ccccceee
Confidence            3566777888999999999987522 2589999999999999885  468999999999999988753    46899999


Q ss_pred             ccCCCCCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccc
Q 038551           87 LSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV  166 (366)
Q Consensus        87 l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  166 (366)
                      +++| .+..+|..+   .+|+.|++++|+++.+|..   +++|+.|++++ |.+..+|..    ..+|+.|.+.+|.+..
T Consensus       269 Ls~N-~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~-N~L~~Lp~l----p~~L~~L~Ls~N~L~~  336 (788)
T PRK15387        269 IFSN-PLTHLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSD-NQLASLPAL----PSELCKLWAYNNQLTS  336 (788)
T ss_pred             ccCC-chhhhhhch---hhcCEEECcCCcccccccc---ccccceeECCC-CccccCCCC----cccccccccccCcccc
Confidence            9999 677777533   5688899999999988863   57899999998 466666642    2357778888888763


Q ss_pred             cccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEE
Q 038551          167 ELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTL  246 (366)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L  246 (366)
                                    ++.   ....|+.|++++|.+..+|.+  ..+     +..|++... .+...+  .  ...+|+.|
T Consensus       337 --------------LP~---lp~~Lq~LdLS~N~Ls~LP~l--p~~-----L~~L~Ls~N-~L~~LP--~--l~~~L~~L  387 (788)
T PRK15387        337 --------------LPT---LPSGLQELSVSDNQLASLPTL--PSE-----LYKLWAYNN-RLTSLP--A--LPSGLKEL  387 (788)
T ss_pred             --------------ccc---cccccceEecCCCccCCCCCC--Ccc-----cceehhhcc-ccccCc--c--cccccceE
Confidence                          111   124688888888888876643  122     333433332 111111  0  12468888


Q ss_pred             EeccCccceEeccccccccccccCCCCCcceeeeecccceeEEeeccCccccccccccceEEeecCc-------ccCCcc
Q 038551          247 QLYFNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLK-------RLECAE  319 (366)
Q Consensus       247 ~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~-------~~~~~~  319 (366)
                      ++++|.++.++            ...++|+.|+++-..+     . ..+.   +|..|+.|++++|.       +..+++
T Consensus       388 dLs~N~Lt~LP------------~l~s~L~~LdLS~N~L-----s-sIP~---l~~~L~~L~Ls~NqLt~LP~sl~~L~~  446 (788)
T PRK15387        388 IVSGNRLTSLP------------VLPSELKELMVSGNRL-----T-SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSS  446 (788)
T ss_pred             EecCCcccCCC------------CcccCCCEEEccCCcC-----C-CCCc---chhhhhhhhhccCcccccChHHhhccC
Confidence            88888777554            2234566665541111     0 1111   11125666666655       345566


Q ss_pred             cccccCCCCCCCC
Q 038551          320 LKELPLDCNHGLE  332 (366)
Q Consensus       320 L~~L~l~~n~~~~  332 (366)
                      |..|++++|++++
T Consensus       447 L~~LdLs~N~Ls~  459 (788)
T PRK15387        447 ETTVNLEGNPLSE  459 (788)
T ss_pred             CCeEECCCCCCCc
Confidence            6667777776653

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.64  E-value=2.7e-19  Score=157.58  Aligned_cols=259  Identities=23%  Similarity=0.240  Sum_probs=192.0

Q ss_pred             cEEEecCCCcccC-CCCCCCCcccEEEcccCCccccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCC
Q 038551           15 NFLVLAGVGLTEA-PSIGMWKETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRS   92 (366)
Q Consensus        15 ~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~   92 (366)
                      .-+.+.++.+..+ +.+.++..++.|++++|++..+|+. .....+..++.+.|++..+|+. ...+.+|..+++++| .
T Consensus        48 ~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~-i~s~~~l~~l~~s~n-~  125 (565)
T KOG0472|consen   48 QKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQ-IGSLISLVKLDCSSN-E  125 (565)
T ss_pred             hhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHH-Hhhhhhhhhhhcccc-c
Confidence            3445667777766 7788888889999999988888877 7788888888888888888887 677888888898888 6


Q ss_pred             CCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccc
Q 038551           93 LENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADS  172 (366)
Q Consensus        93 ~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  172 (366)
                      ..++|+.++.+..|..++..+|++..+|..+.++.+|..+++.+ +.+...|...+. ++.|++++...|.+.       
T Consensus       126 ~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i~-m~~L~~ld~~~N~L~-------  196 (565)
T KOG0472|consen  126 LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG-NKLKALPENHIA-MKRLKHLDCNSNLLE-------  196 (565)
T ss_pred             eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc-cchhhCCHHHHH-HHHHHhcccchhhhh-------
Confidence            77788888888888888888889999998888888888888888 677777776454 888999988888776       


Q ss_pred             cccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCc
Q 038551          173 ILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFND  252 (366)
Q Consensus       173 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  252 (366)
                             ..+..++.+..|+.|++..|++..+|++.....+..   .++..+.+.   -.+.+....++++..||+.+|+
T Consensus       197 -------tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~E---lh~g~N~i~---~lpae~~~~L~~l~vLDLRdNk  263 (565)
T KOG0472|consen  197 -------TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKE---LHVGENQIE---MLPAEHLKHLNSLLVLDLRDNK  263 (565)
T ss_pred             -------cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHH---HHhcccHHH---hhHHHHhcccccceeeeccccc
Confidence                   678888899999999999999888887665555444   222222222   2222224577888999999999


Q ss_pred             cceEeccccccccccccCCCCCcceeeeecccceeEEeeccCccccccccccceEEeecCc
Q 038551          253 LEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLK  313 (366)
Q Consensus       253 l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~  313 (366)
                      ++++|.+.         .-+.+|..|+++--.+..|..+     +..+ + |+.|-+.|||
T Consensus       264 lke~Pde~---------clLrsL~rLDlSNN~is~Lp~s-----Lgnl-h-L~~L~leGNP  308 (565)
T KOG0472|consen  264 LKEVPDEI---------CLLRSLERLDLSNNDISSLPYS-----LGNL-H-LKFLALEGNP  308 (565)
T ss_pred             cccCchHH---------HHhhhhhhhcccCCccccCCcc-----cccc-e-eeehhhcCCc
Confidence            99888655         3356677776651111111111     2224 4 7888888888

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.64  E-value=3.3e-18  Score=134.32  Aligned_cols=165  Identities=24%  Similarity=0.358  Sum_probs=147.4

Q ss_pred             cccCCCCCCCCcccEEEcccCCccccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcC
Q 038551           24 LTEAPSIGMWKETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFN  102 (366)
Q Consensus        24 ~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~  102 (366)
                      +.+++.+-.+.+.++|.+++|.++.+|+. +.+.+|++|++.+|.+..+|.+ +..+++|+.|+++.| .+..+|..|+.
T Consensus        23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfgs  100 (264)
T KOG0617|consen   23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFGS  100 (264)
T ss_pred             HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccCC
Confidence            44557777888999999999999998887 9999999999999999999998 889999999999999 78889999999


Q ss_pred             CCCCcEEEccccccc--cccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchh
Q 038551          103 LVSLQHLDISWTGIT--TLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEV  180 (366)
Q Consensus       103 l~~L~~L~l~~~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  180 (366)
                      ++.|+.||+.+|++.  .+|..+..+..|+.|+++. +...-+|.+ ++++++|+.|.+..|.+.              .
T Consensus       101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdndll--------------~  164 (264)
T KOG0617|consen  101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDNDLL--------------S  164 (264)
T ss_pred             CchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCchh--------------h
Confidence            999999999999886  6888888899999999999 688888888 899999999999999887              6


Q ss_pred             hhhhhhcCcccceeeeccccchhhHh
Q 038551          181 LVEELLVLKHLNLLTITLQSFGALQR  206 (366)
Q Consensus       181 ~~~~l~~l~~L~~L~l~~~~~~~~~~  206 (366)
                      .+.+++.+..|+.|.+.+|..+.+|+
T Consensus       165 lpkeig~lt~lrelhiqgnrl~vlpp  190 (264)
T KOG0617|consen  165 LPKEIGDLTRLRELHIQGNRLTVLPP  190 (264)
T ss_pred             CcHHHHHHHHHHHHhcccceeeecCh
Confidence            78889999999999999998887653

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.60  E-value=9.3e-17  Score=154.85  Aligned_cols=267  Identities=21%  Similarity=0.240  Sum_probs=180.8

Q ss_pred             EEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCC
Q 038551           16 FLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLEN   95 (366)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~   95 (366)
                      .+.+..+++..+..-  -++++.|+...|.+..+.....-.+|++++++.+.+..+| +++..|.+|+.++..+| .+..
T Consensus       203 ~l~c~rn~ls~l~~~--g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N-~l~~  278 (1081)
T KOG0618|consen  203 VLHCERNQLSELEIS--GPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHN-RLVA  278 (1081)
T ss_pred             hhhhhhcccceEEec--CcchheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccch-hHHh
Confidence            344455555544221  1677888888887775444456678999999999999999 66899999999999999 6788


Q ss_pred             cchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcC-------------------------
Q 038551           96 LPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISD-------------------------  150 (366)
Q Consensus        96 l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-------------------------  150 (366)
                      +|..+....+|++|++..|.+..+|.....++.|++|++.. +.+..+|...+..                         
T Consensus       279 lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~  357 (1081)
T KOG0618|consen  279 LPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN  357 (1081)
T ss_pred             hHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchh
Confidence            99888889999999999999999999888899999999998 6777777642221                         


Q ss_pred             CcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCC
Q 038551          151 LKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSN  230 (366)
Q Consensus       151 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~  230 (366)
                      .+.|+.|++.+|.+++             ..+..+.++.+|+.|++++|.+..+|.-. +.++..  +..|.+++.. ++
T Consensus       358 ~~~Lq~LylanN~Ltd-------------~c~p~l~~~~hLKVLhLsyNrL~~fpas~-~~kle~--LeeL~LSGNk-L~  420 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTD-------------SCFPVLVNFKHLKVLHLSYNRLNSFPASK-LRKLEE--LEELNLSGNK-LT  420 (1081)
T ss_pred             hHHHHHHHHhcCcccc-------------cchhhhccccceeeeeecccccccCCHHH-HhchHH--hHHHhcccch-hh
Confidence            2235555556666655             66777778888888888888777665422 344444  2334343321 22


Q ss_pred             CcchhhhccCCcCcEEEeccCccceEeccccccccccccCCCCCcceeeeecccceeEEeeccCccccc------c--cc
Q 038551          231 SLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQA------C--PR  302 (366)
Q Consensus       231 ~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~l~~------~--~~  302 (366)
                      ..+ ..++.+..|++|....|.+..+| +.         ..++.|+.++++            |.+++.      .  |+
T Consensus       421 ~Lp-~tva~~~~L~tL~ahsN~l~~fP-e~---------~~l~qL~~lDlS------------~N~L~~~~l~~~~p~p~  477 (1081)
T KOG0618|consen  421 TLP-DTVANLGRLHTLRAHSNQLLSFP-EL---------AQLPQLKVLDLS------------CNNLSEVTLPEALPSPN  477 (1081)
T ss_pred             hhh-HHHHhhhhhHHHhhcCCceeech-hh---------hhcCcceEEecc------------cchhhhhhhhhhCCCcc
Confidence            222 23566777777777777777666 22         446667777663            444433      2  56


Q ss_pred             ccceEEeecCc--------ccCCcccccccCCCC
Q 038551          303 GLTKFEEHPLK--------RLECAELKELPLDCN  328 (366)
Q Consensus       303 ~L~~L~l~~~~--------~~~~~~L~~L~l~~n  328 (366)
                       |++|+++||.        +..|..+...++.-+
T Consensus       478 -LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  478 -LKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             -cceeeccCCcccccchhhhHHhhhhhheecccC
Confidence             8888888887        444455544444433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.59  E-value=2.3e-17  Score=129.59  Aligned_cols=149  Identities=31%  Similarity=0.420  Sum_probs=136.1

Q ss_pred             ccEEEecCCCcccC-CCCCCCCcccEEEcccCCccccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCC
Q 038551           14 ENFLVLAGVGLTEA-PSIGMWKETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR   91 (366)
Q Consensus        14 ~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~   91 (366)
                      .+.+.+.++.+..+ |.++.+.+|+.|++.+|+++.+|.. ..+++|+.|++.-|++..+|.+ |+.++.|++||+.+|.
T Consensus        35 ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg-fgs~p~levldltynn  113 (264)
T KOG0617|consen   35 ITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDLTYNN  113 (264)
T ss_pred             hhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc-cCCCchhhhhhccccc
Confidence            44567788888888 7899999999999999999999988 9999999999999999999999 9999999999999994


Q ss_pred             CCC-CcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcc
Q 038551           92 SLE-NLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFN  165 (366)
Q Consensus        92 ~~~-~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  165 (366)
                      ..+ .+|..|..+..|+-|.+++|.++.+|..++++++||.|.+.. +.+-++|.+ ++.++.|++|++.+|.++
T Consensus       114 l~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpke-ig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  114 LNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKE-IGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             cccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHH-HHHHHHHHHHhcccceee
Confidence            433 578888889999999999999999999999999999999999 677889998 999999999999999987

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.55  E-value=1.4e-14  Score=143.54  Aligned_cols=261  Identities=21%  Similarity=0.211  Sum_probs=176.8

Q ss_pred             ccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEc
Q 038551            8 TINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLIL   87 (366)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l   87 (366)
                      +|-.+....+.+.+.++..+|... .+.++.|++++|.++.+|.. ...+|+.|++++|.+..+|.. +  ..+|+.|++
T Consensus       174 ~Cl~~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~-l--~~~L~~L~L  248 (754)
T PRK15370        174 DCLKNNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPAT-L--PDTIQEMEL  248 (754)
T ss_pred             hhcccCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChh-hccCCCEEECCCCccccCChh-h--hccccEEEC
Confidence            455667778888888898887522 26899999999999988765 235899999999999988876 3  357999999


Q ss_pred             cCCCCCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcccc
Q 038551           88 SYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVE  167 (366)
Q Consensus        88 ~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  167 (366)
                      ++| .+..+|..+.  .+|++|++++|.++.+|..+.  ++|+.|++++ +.+..+|.. +.  ++|++|++.+|.+.. 
T Consensus       249 s~N-~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~-N~Lt~LP~~-lp--~sL~~L~Ls~N~Lt~-  318 (754)
T PRK15370        249 SIN-RITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYD-NSIRTLPAH-LP--SGITHLNVQSNSLTA-  318 (754)
T ss_pred             cCC-ccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCC-CccccCccc-ch--hhHHHHHhcCCcccc-
Confidence            999 6778887664  589999999999998887553  5899999998 466677754 22  478889999998863 


Q ss_pred             ccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEE
Q 038551          168 LEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQ  247 (366)
Q Consensus       168 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~  247 (366)
                                   .+..+  .++|+.|++.+|.+..++...  +   . .+..|+++++. +...+ ..+  .+.|++|+
T Consensus       319 -------------LP~~l--~~sL~~L~Ls~N~Lt~LP~~l--~---~-sL~~L~Ls~N~-L~~LP-~~l--p~~L~~Ld  373 (754)
T PRK15370        319 -------------LPETL--PPGLKTLEAGENALTSLPASL--P---P-ELQVLDVSKNQ-ITVLP-ETL--PPTITTLD  373 (754)
T ss_pred             -------------CCccc--cccceeccccCCccccCChhh--c---C-cccEEECCCCC-CCcCC-hhh--cCCcCEEE
Confidence                         22222  257888999998888766421  1   1 35556666543 22222 112  35899999


Q ss_pred             eccCccceEeccccccccccccCCCCCcceeeeecccceeEE--eeccCccccccccccceEEeecCc--ccCCcccccc
Q 038551          248 LYFNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARD--MACTCSQYQACPRGLTKFEEHPLK--RLECAELKEL  323 (366)
Q Consensus       248 l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~--l~~~c~~l~~~~~~L~~L~l~~~~--~~~~~~L~~L  323 (366)
                      +++|.+..++...           ...|+.|+++-..+..+.  +. .+  ....|+ +..|++.+|+  ...+++|+.+
T Consensus       374 Ls~N~Lt~LP~~l-----------~~sL~~LdLs~N~L~~LP~sl~-~~--~~~~~~-l~~L~L~~Npls~~tl~~L~~L  438 (754)
T PRK15370        374 VSRNALTNLPENL-----------PAALQIMQASRNNLVRLPESLP-HF--RGEGPQ-PTRIIVEYNPFSERTIQNMQRL  438 (754)
T ss_pred             CCCCcCCCCCHhH-----------HHHHHHHhhccCCcccCchhHH-HH--hhcCCC-ccEEEeeCCCccHHHHHHHHHh
Confidence            9999888776321           134666655422221111  11 11  011466 8889999888  3344444444

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.53  E-value=9.6e-16  Score=147.96  Aligned_cols=120  Identities=25%  Similarity=0.306  Sum_probs=94.1

Q ss_pred             EEEecCCCccc--CCCCCCCCcccEEEcccCCccccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCC
Q 038551           16 FLVLAGVGLTE--APSIGMWKETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRS   92 (366)
Q Consensus        16 ~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~   92 (366)
                      .+....+.+.+  ++...+.-+|+.|++++|.+..+|.. ..+.+|+.|.++.|.|..+|.+ ...+.+|++++|.+| +
T Consensus        25 ~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s-~~~~~~l~~lnL~~n-~  102 (1081)
T KOG0618|consen   25 ILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSS-CSNMRNLQYLNLKNN-R  102 (1081)
T ss_pred             hhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchh-hhhhhcchhheeccc-h
Confidence            33444444444  23445556799999999999888866 7888999999999988888866 788999999999998 8


Q ss_pred             CCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccc
Q 038551           93 LENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYT  137 (366)
Q Consensus        93 ~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~  137 (366)
                      ...+|..+..+++|++|++++|.+..+|..+..+..+..+..++|
T Consensus       103 l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N  147 (1081)
T KOG0618|consen  103 LQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNN  147 (1081)
T ss_pred             hhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcc
Confidence            888998899999999999999998888877666666666666664

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.49  E-value=1.2e-13  Score=136.89  Aligned_cols=236  Identities=19%  Similarity=0.233  Sum_probs=166.2

Q ss_pred             CcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccc
Q 038551           34 KETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISW  113 (366)
Q Consensus        34 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~  113 (366)
                      .+.+.|++.++.++.+|.. -.+.++.|++++|.+..+|...   .++|+.|++++| .++.+|..+.  .+|+.|++++
T Consensus       178 ~~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l---~~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~  250 (754)
T PRK15370        178 NNKTELRLKILGLTTIPAC-IPEQITTLILDNNELKSLPENL---QGNIKTLYANSN-QLTSIPATLP--DTIQEMELSI  250 (754)
T ss_pred             cCceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChhh---ccCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence            3568899999999988864 1247999999999999998873   358999999999 6788887654  5799999999


Q ss_pred             cccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccce
Q 038551          114 TGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNL  193 (366)
Q Consensus       114 ~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  193 (366)
                      |.+..+|..+.  .+|+.|++++ +.+..+|.. +.  ++|+.|++++|.+..              .+..+.  ..|+.
T Consensus       251 N~L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~-l~--~sL~~L~Ls~N~Lt~--------------LP~~lp--~sL~~  308 (754)
T PRK15370        251 NRITELPERLP--SALQSLDLFH-NKISCLPEN-LP--EELRYLSVYDNSIRT--------------LPAHLP--SGITH  308 (754)
T ss_pred             CccCcCChhHh--CCCCEEECcC-CccCccccc-cC--CCCcEEECCCCcccc--------------Ccccch--hhHHH
Confidence            99999987653  5899999997 577778765 32  589999999998874              222221  46888


Q ss_pred             eeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccccccccccCCCC
Q 038551          194 LTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFH  273 (366)
Q Consensus       194 L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~  273 (366)
                      |++++|.+..++... ..     .+..|.+.++. ++..+ ..+  .++|+.|++++|.++.++...           .+
T Consensus       309 L~Ls~N~Lt~LP~~l-~~-----sL~~L~Ls~N~-Lt~LP-~~l--~~sL~~L~Ls~N~L~~LP~~l-----------p~  367 (754)
T PRK15370        309 LNVQSNSLTALPETL-PP-----GLKTLEAGENA-LTSLP-ASL--PPELQVLDVSKNQITVLPETL-----------PP  367 (754)
T ss_pred             HHhcCCccccCCccc-cc-----cceeccccCCc-cccCC-hhh--cCcccEEECCCCCCCcCChhh-----------cC
Confidence            899998888765321 12     34455555543 22222 112  368999999999888665311           24


Q ss_pred             CcceeeeecccceeEEeeccCcccccc----ccccceEEeecCcc-----------cCCcccccccCCCCCCC
Q 038551          274 SLQKVFYKILKIEARDMACTCSQYQAC----PRGLTKFEEHPLKR-----------LECAELKELPLDCNHGL  331 (366)
Q Consensus       274 ~L~~L~l~l~~l~~L~l~~~c~~l~~~----~~~L~~L~l~~~~~-----------~~~~~L~~L~l~~n~~~  331 (366)
                      .|+.|+++           +| .++.+    |.+|+.|++++|.+           ..++.+..|.+.+|++.
T Consensus       368 ~L~~LdLs-----------~N-~Lt~LP~~l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        368 TITTLDVS-----------RN-ALTNLPENLPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CcCEEECC-----------CC-cCCCCCHhHHHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            56666553           33 23332    22388888888872           23477788999999975

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.46  E-value=4.7e-13  Score=132.25  Aligned_cols=234  Identities=20%  Similarity=0.112  Sum_probs=164.5

Q ss_pred             CccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCC
Q 038551           13 KENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRS   92 (366)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~   92 (366)
                      ....+++.++.+..+|..  .++|++|++++|.++.+|..  .++|+.|++++|.+..+|..    ...|+.|++++| .
T Consensus       223 ~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~l----p~~L~~L~Ls~N-~  293 (788)
T PRK15387        223 HITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPAL----PSGLCKLWIFGN-Q  293 (788)
T ss_pred             CCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhc----hhhcCEEECcCC-c
Confidence            456788888999998864  58999999999999998753  56899999999999887763    367889999999 7


Q ss_pred             CCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccc
Q 038551           93 LENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADS  172 (366)
Q Consensus        93 ~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  172 (366)
                      ++.+|..   .++|++|++++|.++.+|..   ..+|+.|++.+ +.+..+|..    ..+|+.|++++|++..      
T Consensus       294 Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~-N~L~~LP~l----p~~Lq~LdLS~N~Ls~------  356 (788)
T PRK15387        294 LTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYN-NQLTSLPTL----PSGLQELSVSDNQLAS------  356 (788)
T ss_pred             ccccccc---ccccceeECCCCccccCCCC---ccccccccccc-Ccccccccc----ccccceEecCCCccCC------
Confidence            7888763   47899999999999988763   34677888888 566677642    2479999999999874      


Q ss_pred             cccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCc
Q 038551          173 ILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFND  252 (366)
Q Consensus       173 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  252 (366)
                              .+..   ..+|..|++++|.+..++...  .     .+..|++++.. +...+    ...++|+.|++++|.
T Consensus       357 --------LP~l---p~~L~~L~Ls~N~L~~LP~l~--~-----~L~~LdLs~N~-Lt~LP----~l~s~L~~LdLS~N~  413 (788)
T PRK15387        357 --------LPTL---PSELYKLWAYNNRLTSLPALP--S-----GLKELIVSGNR-LTSLP----VLPSELKELMVSGNR  413 (788)
T ss_pred             --------CCCC---CcccceehhhccccccCcccc--c-----ccceEEecCCc-ccCCC----CcccCCCEEEccCCc
Confidence                    1211   246777888888888766431  2     24445555432 22222    113589999999998


Q ss_pred             cceEeccccccccccccCCCCCcceeeeecccceeEEeeccCccccccccccceEEeecCc
Q 038551          253 LEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLK  313 (366)
Q Consensus       253 l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~  313 (366)
                      ++.++            ..+.+|+.|+++-..+..+  .   ..+..++. |+.|+|++|+
T Consensus       414 LssIP------------~l~~~L~~L~Ls~NqLt~L--P---~sl~~L~~-L~~LdLs~N~  456 (788)
T PRK15387        414 LTSLP------------MLPSGLLSLSVYRNQLTRL--P---ESLIHLSS-ETTVNLEGNP  456 (788)
T ss_pred             CCCCC------------cchhhhhhhhhccCccccc--C---hHHhhccC-CCeEECCCCC
Confidence            88765            2234566666542122211  1   11333666 9999999998

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.44  E-value=2.5e-14  Score=126.27  Aligned_cols=255  Identities=20%  Similarity=0.214  Sum_probs=170.0

Q ss_pred             CccEEEecCCCcccCC--CCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccC-CCCccccchhhcCCCCCCEEEc
Q 038551           13 KENFLVLAGVGLTEAP--SIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPS-NHLGTVSNNFFHSMASLRVLIL   87 (366)
Q Consensus        13 ~~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~-~~~~~i~~~~~~~l~~L~~L~l   87 (366)
                      +..-+.++.|+++.+|  .|+.+++||+|++++|+|+.+.+.  ..++.+..|.+.+ |+|+++|.+.|+.+..|+-|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            3445678999999995  699999999999999999998665  7888888877766 8999999999999999999999


Q ss_pred             cCCCCCCCc-chhhcCCCCCcEEEccccccccccc-cccCCCCCCEEEcccccccCc------------cChhhhcCCcC
Q 038551           88 SYNRSLENL-PLGIFNLVSLQHLDISWTGITTLPI-ELKYLVNLKCLNLEYTFRLSR------------IPQQVISDLKM  153 (366)
Q Consensus        88 ~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~------------~~~~~~~~~~~  153 (366)
                      .-| .+.-+ ...+..+++|..|.+.+|.+..++. .+..+..++++++..+.++..            .+.. ++...-
T Consensus       148 Nan-~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie-tsgarc  225 (498)
T KOG4237|consen  148 NAN-HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE-TSGARC  225 (498)
T ss_pred             Chh-hhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh-ccccee
Confidence            988 55544 4678899999999999999998887 488899999999887653322            1111 111100


Q ss_pred             CcEEEeecCCcccc--------c-ccc----ccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCccccee
Q 038551          154 LRALRMFECGFNVE--------L-EAD----SILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQC  220 (366)
Q Consensus       154 L~~L~l~~~~~~~~--------~-~~~----~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~  220 (366)
                      ..-..+....+..+        + ++.    ............-+..+++|+++++++|+++.+..- .+....+++...
T Consensus       226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~-aFe~~a~l~eL~  304 (498)
T KOG4237|consen  226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG-AFEGAAELQELY  304 (498)
T ss_pred             cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh-hhcchhhhhhhh
Confidence            00000000000000        0 000    000011123334467899999999999998876431 133333333344


Q ss_pred             eeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccccccccccCCCCCcceeeee
Q 038551          221 LCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYK  281 (366)
Q Consensus       221 L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~  281 (366)
                      |+-+++..+...   .|.++..|+.|++++|+++.+...++        .....|..|.+-
T Consensus       305 L~~N~l~~v~~~---~f~~ls~L~tL~L~~N~it~~~~~aF--------~~~~~l~~l~l~  354 (498)
T KOG4237|consen  305 LTRNKLEFVSSG---MFQGLSGLKTLSLYDNQITTVAPGAF--------QTLFSLSTLNLL  354 (498)
T ss_pred             cCcchHHHHHHH---hhhccccceeeeecCCeeEEEecccc--------cccceeeeeehc
Confidence            444444443333   37888999999999999998865443        445566666554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.43  E-value=1.2e-13  Score=125.86  Aligned_cols=161  Identities=21%  Similarity=0.169  Sum_probs=79.6

Q ss_pred             CCCcccEEEcccCCccc-----cCCC-CCCCCccEEEccCCCCcccc------chhhcCCCCCCEEEccCCCCCCCcchh
Q 038551           32 MWKETTRMSLMQNAIQN-----LTEI-PTCPRLRTLFLPSNHLGTVS------NNFFHSMASLRVLILSYNRSLENLPLG   99 (366)
Q Consensus        32 ~~~~L~~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~~i~------~~~~~~l~~L~~L~l~~~~~~~~l~~~   99 (366)
                      .+..|+.+++.++.++.     ++.. ...+.++.++++++.+...+      ...+..+++|+.|++++|......+..
T Consensus        21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  100 (319)
T cd00116          21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV  100 (319)
T ss_pred             HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence            34456667777666633     2222 45555666666666544211      122445666666666666333333333


Q ss_pred             hcCCCC---CcEEEccccccc-----cccccccCC-CCCCEEEcccccccCc----cChhhhcCCcCCcEEEeecCCccc
Q 038551          100 IFNLVS---LQHLDISWTGIT-----TLPIELKYL-VNLKCLNLEYTFRLSR----IPQQVISDLKMLRALRMFECGFNV  166 (366)
Q Consensus       100 ~~~l~~---L~~L~l~~~~~~-----~l~~~l~~l-~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~  166 (366)
                      +..+.+   |++|++++|.+.     .+...+..+ ++|+.|++++|.....    ++.. +..+++|++|++.+|.+.+
T Consensus       101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~  179 (319)
T cd00116         101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELNLANNGIGD  179 (319)
T ss_pred             HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEECcCCCCch
Confidence            333333   666666666554     122233444 5666666666543321    1111 3345566666666666553


Q ss_pred             cccccccccCCchhhhhhhhcCcccceeeeccccch
Q 038551          167 ELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFG  202 (366)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  202 (366)
                      .         .....+..+..+++|+.|++++|.+.
T Consensus       180 ~---------~~~~l~~~l~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         180 A---------GIRALAEGLKANCNLEVLDLNNNGLT  206 (319)
T ss_pred             H---------HHHHHHHHHHhCCCCCEEeccCCccC
Confidence            0         01122333444456666666655543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.26  E-value=6.6e-12  Score=102.45  Aligned_cols=137  Identities=25%  Similarity=0.267  Sum_probs=46.5

Q ss_pred             ecCCCcccCCCCCCCCcccEEEcccCCccccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc
Q 038551           19 LAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP   97 (366)
Q Consensus        19 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~   97 (366)
                      +..+.+..++...+..+++.|++.+|.|+.+... ..+.+|+.|++++|.+..+..  +..+++|++|++++| .++.+.
T Consensus         4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~   80 (175)
T PF14580_consen    4 LTANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSIS   80 (175)
T ss_dssp             --------------------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-C
T ss_pred             ccccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccc
Confidence            3445566677777778889999999988887666 467888999999998888765  777888999999988 677776


Q ss_pred             hhh-cCCCCCcEEEccccccccccc--cccCCCCCCEEEcccccccCccC---hhhhcCCcCCcEEEe
Q 038551           98 LGI-FNLVSLQHLDISWTGITTLPI--ELKYLVNLKCLNLEYTFRLSRIP---QQVISDLKMLRALRM  159 (366)
Q Consensus        98 ~~~-~~l~~L~~L~l~~~~~~~l~~--~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l  159 (366)
                      ..+ ..+++|++|++++|++..+..  .+..+++|+.|++.+|+.. ..+   ..++..+|+|+.|+.
T Consensus        81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETT
T ss_pred             cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCC
Confidence            544 367888888888888875543  3667788888888875433 222   123456666766653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.23  E-value=4.8e-12  Score=110.41  Aligned_cols=228  Identities=20%  Similarity=0.172  Sum_probs=132.5

Q ss_pred             CCCCCccEEEccCCCCcc----ccchhhcCCCCCCEEEccCCCCCC----Ccch-------hhcCCCCCcEEEccccccc
Q 038551           53 PTCPRLRTLFLPSNHLGT----VSNNFFHSMASLRVLILSYNRSLE----NLPL-------GIFNLVSLQHLDISWTGIT  117 (366)
Q Consensus        53 ~~~~~L~~L~l~~~~~~~----i~~~~~~~l~~L~~L~l~~~~~~~----~l~~-------~~~~l~~L~~L~l~~~~~~  117 (366)
                      ..+..++.+++++|.|+.    .-...+.+.+.|++.++++- +.+    .+|+       ++-.+++|++|+|++|.+.
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            344556666666666641    22233555667777777664 333    2332       2345567777777777664


Q ss_pred             -c-c---cccccCCCCCCEEEcccccccCccChhh-------------hcCCcCCcEEEeecCCccccccccccccCCch
Q 038551          118 -T-L---PIELKYLVNLKCLNLEYTFRLSRIPQQV-------------ISDLKMLRALRMFECGFNVELEADSILFGDSE  179 (366)
Q Consensus       118 -~-l---~~~l~~l~~L~~L~l~~~~~~~~~~~~~-------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  179 (366)
                       . +   ..-++++..|++|++.+| .++......             ++.-+.|+.+...+|.+.+         ....
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen---------~ga~  175 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN---------GGAT  175 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc---------ccHH
Confidence             1 2   122566777777777774 444333221             2345667788777777664         2233


Q ss_pred             hhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEecc
Q 038551          180 VLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKID  259 (366)
Q Consensus       180 ~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~  259 (366)
                      .+...+..++.|+.+.+.+|.+..-.                       + ..-..++..|++|+.|++.+|-++.-...
T Consensus       176 ~~A~~~~~~~~leevr~~qN~I~~eG-----------------------~-~al~eal~~~~~LevLdl~DNtft~egs~  231 (382)
T KOG1909|consen  176 ALAEAFQSHPTLEEVRLSQNGIRPEG-----------------------V-TALAEALEHCPHLEVLDLRDNTFTLEGSV  231 (382)
T ss_pred             HHHHHHHhccccceEEEecccccCch-----------------------h-HHHHHHHHhCCcceeeecccchhhhHHHH
Confidence            45566666777777777766554210                       0 00002366777888888877755543322


Q ss_pred             ccccccccccCCCCCcceeeeecccceeEEeeccC-------ccc----cc-cccccceEEeecCc------------cc
Q 038551          260 AGELKRIREICGFHSLQKVFYKILKIEARDMACTC-------SQY----QA-CPRGLTKFEEHPLK------------RL  315 (366)
Q Consensus       260 ~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c-------~~l----~~-~~~~L~~L~l~~~~------------~~  315 (366)
                      ..+  .  +.+.++.|+.|+++           +|       ..+    .. +|+ |++|++.+|.            +.
T Consensus       232 ~La--k--aL~s~~~L~El~l~-----------dcll~~~Ga~a~~~al~~~~p~-L~vl~l~gNeIt~da~~~la~~~~  295 (382)
T KOG1909|consen  232 ALA--K--ALSSWPHLRELNLG-----------DCLLENEGAIAFVDALKESAPS-LEVLELAGNEITRDAALALAACMA  295 (382)
T ss_pred             HHH--H--Hhcccchheeeccc-----------ccccccccHHHHHHHHhccCCC-CceeccCcchhHHHHHHHHHHHHh
Confidence            211  1  11455666666554           33       111    11 788 9999999888            66


Q ss_pred             CCcccccccCCCCCCC
Q 038551          316 ECAELKELPLDCNHGL  331 (366)
Q Consensus       316 ~~~~L~~L~l~~n~~~  331 (366)
                      ..|.|.+|++++|.+.
T Consensus       296 ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  296 EKPDLEKLNLNGNRLG  311 (382)
T ss_pred             cchhhHHhcCCccccc
Confidence            7899999999999984

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.22  E-value=2.3e-11  Score=110.82  Aligned_cols=230  Identities=23%  Similarity=0.162  Sum_probs=148.7

Q ss_pred             ccEEEecCCCc-----ccC-CCCCCCCcccEEEcccCCccc-------cCCC-CCCCCccEEEccCCCCccccchhhcCC
Q 038551           14 ENFLVLAGVGL-----TEA-PSIGMWKETTRMSLMQNAIQN-------LTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSM   79 (366)
Q Consensus        14 ~~~~~~~~~~~-----~~~-~~~~~~~~L~~L~l~~~~~~~-------l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l   79 (366)
                      ...+.+.++.+     ..+ ..+...+.++++++.++.+..       ++.. ..+++|+.|++++|.+.......+..+
T Consensus        25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l  104 (319)
T cd00116          25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL  104 (319)
T ss_pred             ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence            34556666665     223 245567789999999987762       1222 568899999999998864333334444


Q ss_pred             CC---CCEEEccCCCCCC----CcchhhcCC-CCCcEEEccccccc-----cccccccCCCCCCEEEcccccccCc----
Q 038551           80 AS---LRVLILSYNRSLE----NLPLGIFNL-VSLQHLDISWTGIT-----TLPIELKYLVNLKCLNLEYTFRLSR----  142 (366)
Q Consensus        80 ~~---L~~L~l~~~~~~~----~l~~~~~~l-~~L~~L~l~~~~~~-----~l~~~l~~l~~L~~L~l~~~~~~~~----  142 (366)
                      ..   |+.|++++|+...    .+...+..+ ++|+.|++++|.++     .++..+..+++|++|++++|+..+.    
T Consensus       105 ~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  184 (319)
T cd00116         105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA  184 (319)
T ss_pred             hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHH
Confidence            44   9999999994331    233445666 89999999999887     3444567888999999999654432    


Q ss_pred             cChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccchh--hHhHhhh-c-ccCcccc
Q 038551          143 IPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGA--LQRLLSY-C-RLGSIST  218 (366)
Q Consensus       143 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~l~~~-~-~l~~l~l  218 (366)
                      ++.. +...++|++|++.+|.+.+..         .......+..+++|+.|++++|.+..  +..+... . ...  .+
T Consensus       185 l~~~-l~~~~~L~~L~L~~n~i~~~~---------~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~--~L  252 (319)
T cd00116         185 LAEG-LKANCNLEVLDLNNNGLTDEG---------ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNI--SL  252 (319)
T ss_pred             HHHH-HHhCCCCCEEeccCCccChHH---------HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCC--Cc
Confidence            2222 445679999999999987510         12344566778999999999987764  2222211 1 012  35


Q ss_pred             eeeeccccCCCCCcch----hhhccCCcCcEEEeccCccceE
Q 038551          219 QCLCLRHLNNSNSLSV----FAFASLRHLRTLQLYFNDLEEL  256 (366)
Q Consensus       219 ~~L~~~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~l~~l  256 (366)
                      +.|++..+. +++...    ..+..+++|+++++++|.+...
T Consensus       253 ~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         253 LTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             eEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            556666543 221111    2344556788888888876644

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.20  E-value=3.7e-11  Score=121.30  Aligned_cols=324  Identities=21%  Similarity=0.236  Sum_probs=186.7

Q ss_pred             CCccEEEecCCCcccCCCCCCCCcccEEEcccCC--ccccCCC--CCCCCccEEEccCC-CCccccchhhcCCCCCCEEE
Q 038551           12 EKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNA--IQNLTEI--PTCPRLRTLFLPSN-HLGTVSNNFFHSMASLRVLI   86 (366)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~l~~~--~~~~~L~~L~l~~~-~~~~i~~~~~~~l~~L~~L~   86 (366)
                      ...+.++.-++.+..++.-..+++|++|-+.+|.  +..++..  ..++.|++||+++| .++.+|.+ ++.+-+||+|+
T Consensus       523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~  601 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLD  601 (889)
T ss_pred             hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-Hhhhhhhhccc
Confidence            3456777777888888777777899999999885  6666553  78999999999988 67889988 89999999999


Q ss_pred             ccCCCCCCCcchhhcCCCCCcEEEccccc-cccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcc
Q 038551           87 LSYNRSLENLPLGIFNLVSLQHLDISWTG-ITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFN  165 (366)
Q Consensus        87 l~~~~~~~~l~~~~~~l~~L~~L~l~~~~-~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  165 (366)
                      ++++ .+..+|..++++..|.+|++..+. ...+|.....+++|++|.+... ..... ...+..+.+|++|..-.+...
T Consensus       602 L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s-~~~~~-~~~l~el~~Le~L~~ls~~~~  678 (889)
T KOG4658|consen  602 LSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS-ALSND-KLLLKELENLEHLENLSITIS  678 (889)
T ss_pred             ccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc-ccccc-hhhHHhhhcccchhhheeecc
Confidence            9999 889999999999999999999985 4455666677999999999873 22211 111334444444433332222


Q ss_pred             cc---cccccc------------ccCCchhhhhhhhcCcccceeeeccccchhhHh-H-hhhcc---cCcccceeeeccc
Q 038551          166 VE---LEADSI------------LFGDSEVLVEELLVLKHLNLLTITLQSFGALQR-L-LSYCR---LGSISTQCLCLRH  225 (366)
Q Consensus       166 ~~---~~~~~~------------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-l-~~~~~---l~~l~l~~L~~~~  225 (366)
                      ..   -.+...            ........+..+..+.+|+.|.+.......+.. + .....   ++  .+..+.+.+
T Consensus       679 s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~--~l~~~~~~~  756 (889)
T KOG4658|consen  679 SVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFP--NLSKVSILN  756 (889)
T ss_pred             hhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHH--HHHHHHhhc
Confidence            21   000000            001122334455666777777776665543211 0 00000   10  122344444


Q ss_pred             cCCCCCcchhhhccCCcCcEEEeccC-ccceEeccccccccccccCCCCCcceeeeecccceeEE-ee--ccCccccc--
Q 038551          226 LNNSNSLSVFAFASLRHLRTLQLYFN-DLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARD-MA--CTCSQYQA--  299 (366)
Q Consensus       226 ~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~-l~--~~c~~l~~--  299 (366)
                      |.......+  .-..++|+.|.+..| .++++.....         .+..+..+.+...+++.+. +.  .+.+.+..  
T Consensus       757 ~~~~r~l~~--~~f~~~L~~l~l~~~~~~e~~i~~~k---------~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~  825 (889)
T KOG4658|consen  757 CHMLRDLTW--LLFAPHLTSLSLVSCRLLEDIIPKLK---------ALLELKELILPFNKLEGLRMLCSLGGLPQLYWLP  825 (889)
T ss_pred             cccccccch--hhccCcccEEEEecccccccCCCHHH---------HhhhcccEEecccccccceeeecCCCCceeEecc
Confidence            444444432  234679999999998 4444332211         1111221111111111111 11  01111111  


Q ss_pred             --cccccceEEeecCcccCCcccccccCCCCCCC---CceEEEeechhcccccccccccccccc
Q 038551          300 --CPRGLTKFEEHPLKRLECAELKELPLDCNHGL---EQKIIIKGQEHWWNELQWDDLSTQNAF  358 (366)
Q Consensus       300 --~~~~L~~L~l~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~  358 (366)
                        +|+ |+.+.+     ..||++..++.......   +.......+..|.+.+.|.+..++..|
T Consensus       826 l~~~~-l~~~~v-----e~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  883 (889)
T KOG4658|consen  826 LSFLK-LEELIV-----EECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLRF  883 (889)
T ss_pred             cCccc-hhheeh-----hcCcccccCccccccceeccccceeecCCccceeeEEehhhhhhhhc
Confidence              555 666664     55555555554433211   122333445567778888888887776

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.14  E-value=5.8e-11  Score=96.93  Aligned_cols=124  Identities=25%  Similarity=0.318  Sum_probs=57.8

Q ss_pred             CCccEEEecCCCcccCCCCC-CCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCC
Q 038551           12 EKENFLVLAGVGLTEAPSIG-MWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYN   90 (366)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~   90 (366)
                      .+.+.+++.++.+..+..++ .+.+|+.|++++|.++.+.....+++|++|++++|.++++.+.+...+++|++|++++|
T Consensus        19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N   98 (175)
T PF14580_consen   19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN   98 (175)
T ss_dssp             -----------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS
T ss_pred             cccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC
Confidence            45677899999999997777 58899999999999999987788999999999999999987663457999999999999


Q ss_pred             CCCCCcc--hhhcCCCCCcEEEccccccccccc----cccCCCCCCEEEccc
Q 038551           91 RSLENLP--LGIFNLVSLQHLDISWTGITTLPI----ELKYLVNLKCLNLEY  136 (366)
Q Consensus        91 ~~~~~l~--~~~~~l~~L~~L~l~~~~~~~l~~----~l~~l~~L~~L~l~~  136 (366)
                       .+..+.  ..+..+++|++|++.+|.+...+.    .+..+|+|+.||-..
T Consensus        99 -~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   99 -KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             ----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             -cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence             555443  346789999999999999885543    368899999998765

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=4.8e-11  Score=107.09  Aligned_cols=112  Identities=21%  Similarity=0.170  Sum_probs=80.1

Q ss_pred             hcCCCCCCEEEccCCCCCCCcc--hhhcCCCCCcEEEccccccc---cccccccCCCCCCEEEcccccccCccChhhhcC
Q 038551           76 FHSMASLRVLILSYNRSLENLP--LGIFNLVSLQHLDISWTGIT---TLPIELKYLVNLKCLNLEYTFRLSRIPQQVISD  150 (366)
Q Consensus        76 ~~~l~~L~~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~---~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  150 (366)
                      -.++.+|+++.+.++ .+...+  .....+++++.|||++|-+.   .+-.....+++|+.|+++.|...-......-.-
T Consensus       117 Qsn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~  195 (505)
T KOG3207|consen  117 QSNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL  195 (505)
T ss_pred             hhhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence            356788888888887 556555  24567889999999988665   333456788999999999864444433332335


Q ss_pred             CcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeecccc
Q 038551          151 LKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQS  200 (366)
Q Consensus       151 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  200 (366)
                      ++.|+.|.++.|.++.            .....-+..++.|+.|.+..|.
T Consensus       196 l~~lK~L~l~~CGls~------------k~V~~~~~~fPsl~~L~L~~N~  233 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSW------------KDVQWILLTFPSLEVLYLEANE  233 (505)
T ss_pred             hhhhheEEeccCCCCH------------HHHHHHHHhCCcHHHhhhhccc
Confidence            6788999999999885            3455555677888888888775

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=5.8e-11  Score=106.57  Aligned_cols=162  Identities=19%  Similarity=0.137  Sum_probs=107.2

Q ss_pred             CCCCCcccEEEcccCCccccCC--C-CCCCCccEEEccCCCCccc--cchhhcCCCCCCEEEccCCCCCCCcchh-hcCC
Q 038551           30 IGMWKETTRMSLMQNAIQNLTE--I-PTCPRLRTLFLPSNHLGTV--SNNFFHSMASLRVLILSYNRSLENLPLG-IFNL  103 (366)
Q Consensus        30 ~~~~~~L~~L~l~~~~~~~l~~--~-~~~~~L~~L~l~~~~~~~i--~~~~~~~l~~L~~L~l~~~~~~~~l~~~-~~~l  103 (366)
                      -+++.+|+.+.+.++.+...+.  - ..|++++.|+++.|-|..+  -..+...+|+|+.|+++.|+......+. -..+
T Consensus       117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            4557788888888888777664  2 7888888888888855432  1233567888888888888433322221 1356


Q ss_pred             CCCcEEEccccccc--cccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhh
Q 038551          104 VSLQHLDISWTGIT--TLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVL  181 (366)
Q Consensus       104 ~~L~~L~l~~~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  181 (366)
                      ++|+.|.++.|+++  .+...+..+++|+.|++.+|..+...... ...++.|++|++.+|.+.+            ...
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~------------~~~  263 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLID------------FDQ  263 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcccc------------ccc
Confidence            78888888888776  44445667788888888886433322222 4456678888888887764            233


Q ss_pred             hhhhhcCcccceeeeccccchhh
Q 038551          182 VEELLVLKHLNLLTITLQSFGAL  204 (366)
Q Consensus       182 ~~~l~~l~~L~~L~l~~~~~~~~  204 (366)
                      ......++.|+.|+++.+++.++
T Consensus       264 ~~~~~~l~~L~~Lnls~tgi~si  286 (505)
T KOG3207|consen  264 GYKVGTLPGLNQLNLSSTGIASI  286 (505)
T ss_pred             ccccccccchhhhhccccCcchh
Confidence            45556677777777776666544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.88  E-value=1.3e-09  Score=102.39  Aligned_cols=192  Identities=29%  Similarity=0.374  Sum_probs=99.5

Q ss_pred             EEcccCCc-cccCCCCCCCCccEEEccCCCCccccchhhcCCC-CCCEEEccCCCCCCCcchhhcCCCCCcEEEcccccc
Q 038551           39 MSLMQNAI-QNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMA-SLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGI  116 (366)
Q Consensus        39 L~l~~~~~-~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~-~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~  116 (366)
                      +....+.+ ...........+..+++.++.+.++++. ...+. +|+.|++++| .+..+|..++.+++|+.|+++.|.+
T Consensus        98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l  175 (394)
T COG4886          98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDL  175 (394)
T ss_pred             eeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCchh
Confidence            45555544 2222223445566666666666666554 33342 6666666666 5555554456666666666666666


Q ss_pred             ccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeee
Q 038551          117 TTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTI  196 (366)
Q Consensus       117 ~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  196 (366)
                      ..+|...+.++.|+.|++++ +.+..+|.. +.....|+++.+.+|...              ..+..+..+..+..+.+
T Consensus       176 ~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~-~~~~~~L~~l~~~~N~~~--------------~~~~~~~~~~~l~~l~l  239 (394)
T COG4886         176 SDLPKLLSNLSNLNNLDLSG-NKISDLPPE-IELLSALEELDLSNNSII--------------ELLSSLSNLKNLSGLEL  239 (394)
T ss_pred             hhhhhhhhhhhhhhheeccC-CccccCchh-hhhhhhhhhhhhcCCcce--------------ecchhhhhccccccccc
Confidence            66665544666666666666 556666553 344445666666666422              23444455555555555


Q ss_pred             ccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccce
Q 038551          197 TLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEE  255 (366)
Q Consensus       197 ~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~  255 (366)
                      ..|....++..  ...+..  +..|+++.... ...+  .++...+++.|+++++.+..
T Consensus       240 ~~n~~~~~~~~--~~~l~~--l~~L~~s~n~i-~~i~--~~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         240 SNNKLEDLPES--IGNLSN--LETLDLSNNQI-SSIS--SLGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             CCceeeeccch--hccccc--cceeccccccc-cccc--cccccCccCEEeccCccccc
Confidence            55554432111  111111  22343333221 1111  15566677777777764443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.84  E-value=3.2e-10  Score=101.32  Aligned_cols=27  Identities=19%  Similarity=0.145  Sum_probs=21.4

Q ss_pred             cceEEeecCc---------ccCCcccccccCCCCCC
Q 038551          304 LTKFEEHPLK---------RLECAELKELPLDCNHG  330 (366)
Q Consensus       304 L~~L~l~~~~---------~~~~~~L~~L~l~~n~~  330 (366)
                      |+.++++++|         +..|++|+++++-++..
T Consensus       403 l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  403 LEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             cceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence            8888888888         77888888887776654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.83  E-value=2.8e-09  Score=100.13  Aligned_cols=178  Identities=25%  Similarity=0.336  Sum_probs=125.5

Q ss_pred             EEecCCCc-ccCCCCCCCCcccEEEcccCCccccCCC-CCCC-CccEEEccCCCCccccchhhcCCCCCCEEEccCCCCC
Q 038551           17 LVLAGVGL-TEAPSIGMWKETTRMSLMQNAIQNLTEI-PTCP-RLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSL   93 (366)
Q Consensus        17 ~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~-~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~   93 (366)
                      +....+.+ ..+..+...+.++.|++.++.+..++.. .... +|+.|++++|.+..++.. +..+++|+.|++++| .+
T Consensus        98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l  175 (394)
T COG4886          98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DL  175 (394)
T ss_pred             eeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCc-hh
Confidence            44445554 4444455557788888888888888777 4443 888888888888887644 677888888888888 77


Q ss_pred             CCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcccccccccc
Q 038551           94 ENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSI  173 (366)
Q Consensus        94 ~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  173 (366)
                      ..+|...+..+.|+.|++++|.++.+|.....+..|+++.++++. ....+.. +.++.++..+.+.+|++.        
T Consensus       176 ~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~--------  245 (394)
T COG4886         176 SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE--------  245 (394)
T ss_pred             hhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee--------
Confidence            778776667888888888888888888766666778888888743 3333333 667777777777777665        


Q ss_pred             ccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcc
Q 038551          174 LFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCR  212 (366)
Q Consensus       174 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~  212 (366)
                            ..+..+..+..++.|+++.|.+..++.+....+
T Consensus       246 ------~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~  278 (394)
T COG4886         246 ------DLPESIGNLSNLETLDLSNNQISSISSLGSLTN  278 (394)
T ss_pred             ------eccchhccccccceeccccccccccccccccCc
Confidence                  224556667778888888887777666433333

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.81  E-value=1.3e-10  Score=107.61  Aligned_cols=168  Identities=28%  Similarity=0.374  Sum_probs=108.2

Q ss_pred             EecCCCcccCC-CCCCCCcccEEEcccCCccccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCC
Q 038551           18 VLAGVGLTEAP-SIGMWKETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLEN   95 (366)
Q Consensus        18 ~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~   95 (366)
                      ++..+.+..+| ....|..|..+.+..|.+..+|.. ..+..|.+++++.|.++.+|..++  .-=|++|.+++| +++.
T Consensus        81 DlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC--~lpLkvli~sNN-kl~~  157 (722)
T KOG0532|consen   81 DLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLC--DLPLKVLIVSNN-KLTS  157 (722)
T ss_pred             hccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhh--cCcceeEEEecC-cccc
Confidence            44444455553 233344555556666666665555 566666677777777766666522  234677777777 6777


Q ss_pred             cchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcccccccccccc
Q 038551           96 LPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILF  175 (366)
Q Consensus        96 l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  175 (366)
                      +|..++....|..|+.+.|.+..+|..++.+.+|+.|++.. +.+..+|.+ ...+ .|..|+++.|++.          
T Consensus       158 lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~E-l~~L-pLi~lDfScNkis----------  224 (722)
T KOG0532|consen  158 LPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEE-LCSL-PLIRLDFSCNKIS----------  224 (722)
T ss_pred             CCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHH-HhCC-ceeeeecccCcee----------
Confidence            77777766777777777777777777777777777777777 566666666 4433 4777777777776          


Q ss_pred             CCchhhhhhhhcCcccceeeeccccchhhH
Q 038551          176 GDSEVLVEELLVLKHLNLLTITLQSFGALQ  205 (366)
Q Consensus       176 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  205 (366)
                          .++-.+..|.+|++|.+.+|...+.|
T Consensus       225 ----~iPv~fr~m~~Lq~l~LenNPLqSPP  250 (722)
T KOG0532|consen  225 ----YLPVDFRKMRHLQVLQLENNPLQSPP  250 (722)
T ss_pred             ----ecchhhhhhhhheeeeeccCCCCCCh
Confidence                45666677777777777777776543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.78  E-value=1.7e-09  Score=92.90  Aligned_cols=134  Identities=23%  Similarity=0.177  Sum_probs=91.0

Q ss_pred             CCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhh
Q 038551          102 NLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVL  181 (366)
Q Consensus       102 ~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  181 (366)
                      ..+.|.++|+++|.++.+.+++.-+++++.|++++ |.+..+..  ++.+++|.+|++++|.++.              .
T Consensus       282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~-N~i~~v~n--La~L~~L~~LDLS~N~Ls~--------------~  344 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQ-NRIRTVQN--LAELPQLQLLDLSGNLLAE--------------C  344 (490)
T ss_pred             hHhhhhhccccccchhhhhhhhhhccceeEEeccc-cceeeehh--hhhcccceEeecccchhHh--------------h
Confidence            34668888888888888887777888888888888 56666554  6778888888888887763              2


Q ss_pred             hhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEe
Q 038551          182 VEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELK  257 (366)
Q Consensus       182 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~  257 (366)
                      ..--..+.+++.|.+++|.+..+..+..+.++.+     |++++..--.-..+..++++|-|+.+.+.+|.+..++
T Consensus       345 ~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvn-----LDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  345 VGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVN-----LDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hhhHhhhcCEeeeehhhhhHhhhhhhHhhhhhee-----ccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            2222346677788888888877777666665444     4444322212222344777888888888888766554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.74  E-value=1.7e-09  Score=92.90  Aligned_cols=117  Identities=21%  Similarity=0.135  Sum_probs=53.9

Q ss_pred             CCCCEEEccCCCCCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEe
Q 038551           80 ASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRM  159 (366)
Q Consensus        80 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  159 (366)
                      +.|+++|+++| .++.+-+++.-.+.++.|++++|.+..+.. +..+++|++||+++ |.+..+..- -.++.+++.|.+
T Consensus       284 q~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~Gw-h~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSG-NLLAECVGW-HLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeeccc-chhHhhhhh-HhhhcCEeeeeh
Confidence            34555555555 444444444444555555555555554433 44555555555555 333333221 123444555555


Q ss_pred             ecCCccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCc
Q 038551          160 FECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGS  215 (366)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~  215 (366)
                      .+|.+.               ..++++.+-.|..|++++|.+..+..+..+.+++-
T Consensus       360 a~N~iE---------------~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPC  400 (490)
T KOG1259|consen  360 AQNKIE---------------TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPC  400 (490)
T ss_pred             hhhhHh---------------hhhhhHhhhhheeccccccchhhHHHhcccccccH
Confidence            555442               23444444444455555555554444444444333

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.73  E-value=1.7e-09  Score=100.39  Aligned_cols=141  Identities=21%  Similarity=0.281  Sum_probs=126.2

Q ss_pred             CCCcccC-CCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchh
Q 038551           21 GVGLTEA-PSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLG   99 (366)
Q Consensus        21 ~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~   99 (366)
                      .+.+..+ +.+..+..|+.++++.|++..+|.....--|++|.+++|+++.+|+. ++..++|..||.+.| .+..+|+.
T Consensus       107 ~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~n-ei~slpsq  184 (722)
T KOG0532|consen  107 HNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKN-EIQSLPSQ  184 (722)
T ss_pred             hccceecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc-cccchhHHHhhhhhh-hhhhchHH
Confidence            4455556 46888899999999999999998876667799999999999999999 778999999999999 78889999


Q ss_pred             hcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccc
Q 038551          100 IFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV  166 (366)
Q Consensus       100 ~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  166 (366)
                      ++++..|+.|.+..|++..+|..+. .-.|..||++. |.+..+|.. |.++..|++|.+..|.+..
T Consensus       185 l~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfSc-Nkis~iPv~-fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  185 LGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSC-NKISYLPVD-FRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeeccc-Cceeecchh-hhhhhhheeeeeccCCCCC
Confidence            9999999999999999999999888 55699999996 899999998 9999999999999999875

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.68  E-value=2.9e-09  Score=95.32  Aligned_cols=270  Identities=16%  Similarity=0.109  Sum_probs=143.4

Q ss_pred             cccEEEcccCCccc---cCCC-CCCCCccEEEccCC-CCccc-cchhhcCCCCCCEEEccCCCCCCCcc--hhhcCCCCC
Q 038551           35 ETTRMSLMQNAIQN---LTEI-PTCPRLRTLFLPSN-HLGTV-SNNFFHSMASLRVLILSYNRSLENLP--LGIFNLVSL  106 (366)
Q Consensus        35 ~L~~L~l~~~~~~~---l~~~-~~~~~L~~L~l~~~-~~~~i-~~~~~~~l~~L~~L~l~~~~~~~~l~--~~~~~l~~L  106 (366)
                      .|+.|++.++.=..   +... ..|++++.|.+.+| .+++. -.++-..|++|+.+++..|..++...  .....+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            46677777663332   2222 67777777777777 33321 11223457777777777764444322  122456777


Q ss_pred             cEEEcccc-cccc--ccccccCCCCCCEEEcccccccCccChh-hhcCCcCCcEEEeecCCccccccccccccCCchhhh
Q 038551          107 QHLDISWT-GITT--LPIELKYLVNLKCLNLEYTFRLSRIPQQ-VISDLKMLRALRMFECGFNVELEADSILFGDSEVLV  182 (366)
Q Consensus       107 ~~L~l~~~-~~~~--l~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  182 (366)
                      .++++++| .++.  +.....+++.++.+...+|...+.-... .-+.+..+.++++..|....           ++...
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lT-----------D~~~~  287 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLT-----------DEDLW  287 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcccc-----------chHHH
Confidence            77777776 3432  2222445555666655555332221110 01133334455544553222           23334


Q ss_pred             hhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhc-cCCcCcEEEeccC-ccceEeccc
Q 038551          183 EELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFA-SLRHLRTLQLYFN-DLEELKIDA  260 (366)
Q Consensus       183 ~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~-~l~~l~~~~  260 (366)
                      ..-..+..|+.+..++.....-..+..+..-.. .+..+.+..|...++..+..++ ++++|+.+++..+ ...+-....
T Consensus       288 ~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~-~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s  366 (483)
T KOG4341|consen  288 LIACGCHALQVLCYSSCTDITDEVLWALGQHCH-NLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLAS  366 (483)
T ss_pred             HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC-ceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhh
Confidence            444455666666665543332222222222222 4566666666665555543343 4567777777666 222211111


Q ss_pred             cccccccccCCCCCcceeeee-------------------cccceeEEeeccCccccc--------cccccceEEeecCc
Q 038551          261 GELKRIREICGFHSLQKVFYK-------------------ILKIEARDMACTCSQYQA--------CPRGLTKFEEHPLK  313 (366)
Q Consensus       261 ~~~~~~~~~~~~~~L~~L~l~-------------------l~~l~~L~l~~~c~~l~~--------~~~~L~~L~l~~~~  313 (366)
                      ..       .+++.|+.+.++                   ...++.+.++ +|+.+++        .++ ||.+++-++.
T Consensus       367 ls-------~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~-n~p~i~d~~Le~l~~c~~-Leri~l~~~q  437 (483)
T KOG4341|consen  367 LS-------RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELD-NCPLITDATLEHLSICRN-LERIELIDCQ  437 (483)
T ss_pred             hc-------cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeec-CCCCchHHHHHHHhhCcc-cceeeeechh
Confidence            11       556777777766                   2334677888 8887766        677 9999888877


Q ss_pred             ----------ccCCcccccccC
Q 038551          314 ----------RLECAELKELPL  325 (366)
Q Consensus       314 ----------~~~~~~L~~L~l  325 (366)
                                ...||+++...+
T Consensus       438 ~vtk~~i~~~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  438 DVTKEAISRFATHLPNIKVHAY  459 (483)
T ss_pred             hhhhhhhHHHHhhCccceehhh
Confidence                      567888776554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.68  E-value=5e-08  Score=85.65  Aligned_cols=215  Identities=18%  Similarity=0.142  Sum_probs=143.8

Q ss_pred             CCCCCCCcccEEEcccCCccc-----cCCC-CCCCCccEEEccCCCCc----cccch------hhcCCCCCCEEEccCCC
Q 038551           28 PSIGMWKETTRMSLMQNAIQN-----LTEI-PTCPRLRTLFLPSNHLG----TVSNN------FFHSMASLRVLILSYNR   91 (366)
Q Consensus        28 ~~~~~~~~L~~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~----~i~~~------~~~~l~~L~~L~l~~~~   91 (366)
                      +....+..++.+++++|.|-.     +... ...+.|+..++++--.+    .+|+.      ++..+++|++++|++|-
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            556677899999999998764     3222 56668999988875222    34432      24567899999999994


Q ss_pred             CCCCcc----hhhcCCCCCcEEEcccccccccc--------------ccccCCCCCCEEEcccccccCccChh----hhc
Q 038551           92 SLENLP----LGIFNLVSLQHLDISWTGITTLP--------------IELKYLVNLKCLNLEYTFRLSRIPQQ----VIS  149 (366)
Q Consensus        92 ~~~~l~----~~~~~l~~L~~L~l~~~~~~~l~--------------~~l~~l~~L~~L~l~~~~~~~~~~~~----~~~  149 (366)
                      +...-+    .-+.++..|++|.|.+|++....              ....+-++|+++..++ |.+.+.+..    .+.
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrlen~ga~~~A~~~~  182 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NRLENGGATALAEAFQ  182 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-cccccccHHHHHHHHH
Confidence            433322    33567899999999999886221              1246778999999998 677666643    355


Q ss_pred             CCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHh---hhcccCcccceeeecccc
Q 038551          150 DLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLL---SYCRLGSISTQCLCLRHL  226 (366)
Q Consensus       150 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~---~~~~l~~l~l~~L~~~~~  226 (366)
                      ..+.|+.+.+..|.+..+         +......++..+++|+.|++..|.++.-....   .++.++.  ++.++++.|
T Consensus       183 ~~~~leevr~~qN~I~~e---------G~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~--L~El~l~dc  251 (382)
T KOG1909|consen  183 SHPTLEEVRLSQNGIRPE---------GVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH--LRELNLGDC  251 (382)
T ss_pred             hccccceEEEecccccCc---------hhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch--heeeccccc
Confidence            678999999999998862         23456788889999999999999876422211   1222222  555666665


Q ss_pred             CCCCCcchh---hh-ccCCcCcEEEeccCccc
Q 038551          227 NNSNSLSVF---AF-ASLRHLRTLQLYFNDLE  254 (366)
Q Consensus       227 ~~~~~~~~~---~l-~~~~~L~~L~l~~~~l~  254 (366)
                      .-.+....+   ++ ...|.|+.+.+.+|.++
T Consensus       252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  252 LLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             ccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            433333221   12 23567777777777555

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.65  E-value=2.5e-08  Score=66.93  Aligned_cols=58  Identities=33%  Similarity=0.444  Sum_probs=27.2

Q ss_pred             CccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcEEEccccc
Q 038551           57 RLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIFNLVSLQHLDISWTG  115 (366)
Q Consensus        57 ~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~  115 (366)
                      +|++|++++|.+..+++++|..+++|++|++++| .++.++ ..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4444555555555554444455555555555544 333333 234444444444444443

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.63  E-value=2.1e-08  Score=86.25  Aligned_cols=232  Identities=16%  Similarity=0.106  Sum_probs=140.0

Q ss_pred             CcccEEEcccCCccccCCC----CCCCCccEEEccCCCCccccc--hhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCc
Q 038551           34 KETTRMSLMQNAIQNLTEI----PTCPRLRTLFLPSNHLGTVSN--NFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQ  107 (366)
Q Consensus        34 ~~L~~L~l~~~~~~~l~~~----~~~~~L~~L~l~~~~~~~i~~--~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~  107 (366)
                      ..+.-+.+.++.|......    ..+..++.+++.+|.|++..+  .++..+|.|++|+++.|+....+-..--...+|+
T Consensus        45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR  124 (418)
T ss_pred             cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence            3455667777777664433    678899999999998875433  3477899999999999954333322112467899


Q ss_pred             EEEccccccc--cccccccCCCCCCEEEcccccccC--ccChhhhcC-CcCCcEEEeecCCccccccccccccCCchhhh
Q 038551          108 HLDISWTGIT--TLPIELKYLVNLKCLNLEYTFRLS--RIPQQVISD-LKMLRALRMFECGFNVELEADSILFGDSEVLV  182 (366)
Q Consensus       108 ~L~l~~~~~~--~l~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  182 (366)
                      .|-+.++++.  ...+.+..++.++.|+++.|+.-.  ..... +.. .+.++++++.+|....           +....
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c-~e~~s~~v~tlh~~~c~~~~-----------w~~~~  192 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNC-IEDWSTEVLTLHQLPCLEQL-----------WLNKN  192 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcccccc-ccccchhhhhhhcCCcHHHH-----------HHHHH
Confidence            9999998664  566668889999999999852211  11111 122 2467788887776542           22222


Q ss_pred             hhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccc
Q 038551          183 EELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGE  262 (366)
Q Consensus       183 ~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~  262 (366)
                      .--.-.+++..+.+..+.+.....-.....++.+....|.-+++..  ..++.++.+++.|..|.++.+.+.+--..  +
T Consensus       193 ~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~ids--wasvD~Ln~f~~l~dlRv~~~Pl~d~l~~--~  268 (418)
T KOG2982|consen  193 KLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDS--WASVDALNGFPQLVDLRVSENPLSDPLRG--G  268 (418)
T ss_pred             hHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhccccccc--HHHHHHHcCCchhheeeccCCcccccccC--C
Confidence            2223457788777777655443332223333333332333333333  33344688999999999999966543221  2


Q ss_pred             cccccccCCCCCcceeeee
Q 038551          263 LKRIREICGFHSLQKVFYK  281 (366)
Q Consensus       263 ~~~~~~~~~~~~L~~L~l~  281 (366)
                      ++..+-+..+++++.|+=+
T Consensus       269 err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  269 ERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             cceEEEEeeccceEEecCc
Confidence            3333333666777766543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.62  E-value=4.5e-08  Score=65.65  Aligned_cols=57  Identities=28%  Similarity=0.410  Sum_probs=53.5

Q ss_pred             CcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCC
Q 038551           34 KETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYN   90 (366)
Q Consensus        34 ~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~   90 (366)
                      ++|+.|++++|.++.++..  ..+++|++|++++|.+..+++++|..+++|++|++++|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            5799999999999998866  88999999999999999999988999999999999998

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.58  E-value=2.6e-08  Score=84.66  Aligned_cols=231  Identities=18%  Similarity=0.132  Sum_probs=126.4

Q ss_pred             CCCCccEEEccCCCCccc----cchhhcCCCCCCEEEccCCCCCC----Ccc-------hhhcCCCCCcEEEccccccc-
Q 038551           54 TCPRLRTLFLPSNHLGTV----SNNFFHSMASLRVLILSYNRSLE----NLP-------LGIFNLVSLQHLDISWTGIT-  117 (366)
Q Consensus        54 ~~~~L~~L~l~~~~~~~i----~~~~~~~l~~L~~L~l~~~~~~~----~l~-------~~~~~l~~L~~L~l~~~~~~-  117 (366)
                      .+..+..+++++|.|+.-    -...+.+-.+|++.+++.- +.+    .++       .++-+|++|+..++++|.+. 
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            355666677777766521    1122445566777777665 433    122       23456778888888888665 


Q ss_pred             cccc----cccCCCCCCEEEcccccccCccChhh-------------hcCCcCCcEEEeecCCccccccccccccCCchh
Q 038551          118 TLPI----ELKYLVNLKCLNLEYTFRLSRIPQQV-------------ISDLKMLRALRMFECGFNVELEADSILFGDSEV  180 (366)
Q Consensus       118 ~l~~----~l~~l~~L~~L~l~~~~~~~~~~~~~-------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  180 (366)
                      +.|+    -+++-+.|.+|.+++ +.++.+..+-             .++-+.|+.+...+|.+..         +....
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~N-nGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen---------gs~~~  176 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNN-NGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN---------GSKEL  176 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeec-CCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc---------CcHHH
Confidence            3333    256777888888887 4655554321             2345678888888887664         11223


Q ss_pred             hhhhhhcCcccceeeeccccchh--hHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEec
Q 038551          181 LVEELLVLKHLNLLTITLQSFGA--LQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKI  258 (366)
Q Consensus       181 ~~~~l~~l~~L~~L~l~~~~~~~--~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~  258 (366)
                      ....+.++..|+.+.+.+|++..  +..+.                         ...+..+.+|+.|++.+|.++....
T Consensus       177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~-------------------------~~gl~y~~~LevLDlqDNtft~~gS  231 (388)
T COG5238         177 SAALLESHENLKEVKIQQNGIRPEGVTMLA-------------------------FLGLFYSHSLEVLDLQDNTFTLEGS  231 (388)
T ss_pred             HHHHHHhhcCceeEEeeecCcCcchhHHHH-------------------------HHHHHHhCcceeeeccccchhhhhH
Confidence            34455566778888887776652  21111                         1124556667777777765554332


Q ss_pred             cccccccccccCCCCCcceeeee--cccceeEEeeccCcccc------ccccccceEEeecCc---------------cc
Q 038551          259 DAGELKRIREICGFHSLQKVFYK--ILKIEARDMACTCSQYQ------ACPRGLTKFEEHPLK---------------RL  315 (366)
Q Consensus       259 ~~~~~~~~~~~~~~~~L~~L~l~--l~~l~~L~l~~~c~~l~------~~~~~L~~L~l~~~~---------------~~  315 (366)
                      ...+  ..+  +..+.|+.|.+.  +.+.     . +...+-      .+|+ |..|...+|-               -.
T Consensus       232 ~~La--~al--~~W~~lrEL~lnDClls~-----~-G~~~v~~~f~e~~~p~-l~~L~~~Yne~~~~~i~~~~l~~~e~~  300 (388)
T COG5238         232 RYLA--DAL--CEWNLLRELRLNDCLLSN-----E-GVKSVLRRFNEKFVPN-LMPLPGDYNERRGGIILDISLNEFEQD  300 (388)
T ss_pred             HHHH--HHh--cccchhhhccccchhhcc-----c-cHHHHHHHhhhhcCCC-ccccccchhhhcCceeeeechhhhhhc
Confidence            2211  001  334556666554  1110     0 111110      0455 5555555544               35


Q ss_pred             CCcccccccCCCCCCC
Q 038551          316 ECAELKELPLDCNHGL  331 (366)
Q Consensus       316 ~~~~L~~L~l~~n~~~  331 (366)
                      ++|.|..|.+.||.+.
T Consensus       301 ~~p~L~~le~ngNr~~  316 (388)
T COG5238         301 AVPLLVDLERNGNRIK  316 (388)
T ss_pred             ccHHHHHHHHccCcch
Confidence            6788888888888875

>PLN03150 hypothetical protein; Provisional

Probab=98.53  E-value=3.5e-07  Score=90.52  Aligned_cols=84  Identities=25%  Similarity=0.318  Sum_probs=41.8

Q ss_pred             CCEEEccCCCCCCCcchhhcCCCCCcEEEccccccc-cccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEee
Q 038551           82 LRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGIT-TLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMF  160 (366)
Q Consensus        82 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  160 (366)
                      ++.|+|++|...+.+|..+..+++|++|++++|.+. .+|..++.+++|+.|++++|+..+.+|.. +.++++|+.|++.
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECc
Confidence            444555555333344544555555555555555444 44444555555555555554444444443 4455555555555


Q ss_pred             cCCccc
Q 038551          161 ECGFNV  166 (366)
Q Consensus       161 ~~~~~~  166 (366)
                      +|.+.+
T Consensus       499 ~N~l~g  504 (623)
T PLN03150        499 GNSLSG  504 (623)
T ss_pred             CCcccc
Confidence            555443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.49  E-value=1.4e-08  Score=95.81  Aligned_cols=127  Identities=28%  Similarity=0.362  Sum_probs=59.7

Q ss_pred             CCcccEEEcccCCccccCC-CCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEc
Q 038551           33 WKETTRMSLMQNAIQNLTE-IPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDI  111 (366)
Q Consensus        33 ~~~L~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l  111 (366)
                      +..+..+.+..|.+..... ...+.+|+.+++.+|.|..+... +..+++|++|++++| .++.+.. +..++.|+.|++
T Consensus        71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~l  147 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELNL  147 (414)
T ss_pred             hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccc-ccccccc-hhhccchhhhee
Confidence            3444444444444444222 24455555555555555544432 344555555555555 4444332 334444555555


Q ss_pred             cccccccccccccCCCCCCEEEcccccccCccCh-hhhcCCcCCcEEEeecCCcc
Q 038551          112 SWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQ-QVISDLKMLRALRMFECGFN  165 (366)
Q Consensus       112 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~  165 (366)
                      .+|.+..+.. +..++.|+.+++++ +.+..+.. . ...+.+++.+.+.+|.+.
T Consensus       148 ~~N~i~~~~~-~~~l~~L~~l~l~~-n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  148 SGNLISDISG-LESLKSLKLLDLSY-NRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             ccCcchhccC-CccchhhhcccCCc-chhhhhhhhh-hhhccchHHHhccCCchh
Confidence            5555554432 33355555555555 33333332 1 134445555555555443

>PLN03150 hypothetical protein; Provisional

Probab=98.46  E-value=6.5e-07  Score=88.68  Aligned_cols=106  Identities=24%  Similarity=0.308  Sum_probs=82.0

Q ss_pred             CccEEEccCCCCc-cccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccccccc-cccccccCCCCCCEEEc
Q 038551           57 RLRTLFLPSNHLG-TVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGIT-TLPIELKYLVNLKCLNL  134 (366)
Q Consensus        57 ~L~~L~l~~~~~~-~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~l~~~l~~l~~L~~L~l  134 (366)
                      .++.|++++|.+. .+|.. +..+++|+.|++++|...+.+|..++.+++|++|++++|.+. .+|..++.+++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            4677888888775 55655 788888888888888555678888888888888888888887 67777888888888888


Q ss_pred             ccccccCccChhhhcC-CcCCcEEEeecCCc
Q 038551          135 EYTFRLSRIPQQVISD-LKMLRALRMFECGF  164 (366)
Q Consensus       135 ~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~  164 (366)
                      ++|+..+.+|.. +.. ..++..+++.+|..
T Consensus       498 s~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        498 NGNSLSGRVPAA-LGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             cCCcccccCChH-HhhccccCceEEecCCcc
Confidence            887777788876 443 34567777777753

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=1.4e-08  Score=87.27  Aligned_cols=179  Identities=18%  Similarity=0.081  Sum_probs=92.7

Q ss_pred             CCCEEEccCCCCCC--CcchhhcCCCCCcEEEccccccc-cccccccCCCCCCEEEcccccccCccChh-hhcCCcCCcE
Q 038551           81 SLRVLILSYNRSLE--NLPLGIFNLVSLQHLDISWTGIT-TLPIELKYLVNLKCLNLEYTFRLSRIPQQ-VISDLKMLRA  156 (366)
Q Consensus        81 ~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~-~l~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~  156 (366)
                      .||.+|+++. .++  .+...+..|.+|+.|.+.++.+. .+...+..-.+|+.+++++|+.++..... .+.+++.|.+
T Consensus       186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            3666666665 333  12222345566666666666554 23333455566777777776666655432 2446667777


Q ss_pred             EEeecCCccccccccccccCCchhhhhhhhc-Ccccceeeeccccch-hhHhHhhhcccCcccceeeeccccCCCCCcch
Q 038551          157 LRMFECGFNVELEADSILFGDSEVLVEELLV-LKHLNLLTITLQSFG-ALQRLLSYCRLGSISTQCLCLRHLNNSNSLSV  234 (366)
Q Consensus       157 L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~-~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~  234 (366)
                      |+++.|....+            ..--.... -++|..|++++.... +...+..+..-+. ++.+|+++++..+.+.-.
T Consensus       265 LNlsWc~l~~~------------~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp-~l~~LDLSD~v~l~~~~~  331 (419)
T KOG2120|consen  265 LNLSWCFLFTE------------KVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCP-NLVHLDLSDSVMLKNDCF  331 (419)
T ss_pred             cCchHhhccch------------hhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCC-ceeeeccccccccCchHH
Confidence            77777665531            11111111 145666666654322 1112222222222 466677777766666444


Q ss_pred             hhhccCCcCcEEEeccC-ccceEeccccccccccccCCCCCcceeeee
Q 038551          235 FAFASLRHLRTLQLYFN-DLEELKIDAGELKRIREICGFHSLQKVFYK  281 (366)
Q Consensus       235 ~~l~~~~~L~~L~l~~~-~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~  281 (366)
                      -.+.+++.|++|.++.| .+.-        ...+-..+.|.|..|++.
T Consensus       332 ~~~~kf~~L~~lSlsRCY~i~p--------~~~~~l~s~psl~yLdv~  371 (419)
T KOG2120|consen  332 QEFFKFNYLQHLSLSRCYDIIP--------ETLLELNSKPSLVYLDVF  371 (419)
T ss_pred             HHHHhcchheeeehhhhcCCCh--------HHeeeeccCcceEEEEec
Confidence            45667777777777777 4331        011111445667777664

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=2.5e-08  Score=85.81  Aligned_cols=176  Identities=22%  Similarity=0.153  Sum_probs=118.0

Q ss_pred             CCCcEEEccccccc--cccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCC-ccccccccccccCCchh
Q 038551          104 VSLQHLDISWTGIT--TLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECG-FNVELEADSILFGDSEV  180 (366)
Q Consensus       104 ~~L~~L~l~~~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~  180 (366)
                      ..|+++||+...++  .+...++.+.+|+.|.+.+...-..+... +++-.+|+.|+++.+. ++.            ..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~------------n~  251 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTE------------NA  251 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccch------------hH
Confidence            35899999998887  56666889999999999985555555555 7888899999998874 543            13


Q ss_pred             hhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCC-Ccchhhh-ccCCcCcEEEeccC-ccceEe
Q 038551          181 LVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSN-SLSVFAF-ASLRHLRTLQLYFN-DLEELK  257 (366)
Q Consensus       181 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~-~~~~~~l-~~~~~L~~L~l~~~-~l~~l~  257 (366)
                      .---++++..|..|++++.....-..-....+... .+..|+++++.... ...++.+ ..|++|.+||+++| .++.-.
T Consensus       252 ~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise-~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~  330 (419)
T KOG2120|consen  252 LQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISE-TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC  330 (419)
T ss_pred             HHHHHHhhhhHhhcCchHhhccchhhhHHHhhhch-hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH
Confidence            33455788999999999987775443333445444 67778888775432 2234334 58999999999999 777522


Q ss_pred             ccccccccccccCCCCCcceeeeecccceeEEeeccCccc--------cccccccceEEeecCc
Q 038551          258 IDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQY--------QACPRGLTKFEEHPLK  313 (366)
Q Consensus       258 ~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~l--------~~~~~~L~~L~l~~~~  313 (366)
                      ...+        ..|+.|+.|.+          + -|..+        ...|. |.+|++.|+-
T Consensus       331 ~~~~--------~kf~~L~~lSl----------s-RCY~i~p~~~~~l~s~ps-l~yLdv~g~v  374 (419)
T KOG2120|consen  331 FQEF--------FKFNYLQHLSL----------S-RCYDIIPETLLELNSKPS-LVYLDVFGCV  374 (419)
T ss_pred             HHHH--------Hhcchheeeeh----------h-hhcCCChHHeeeeccCcc-eEEEEecccc
Confidence            1111        33555555544          4 45432        22566 7777776664

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.40  E-value=3.3e-08  Score=93.34  Aligned_cols=140  Identities=22%  Similarity=0.298  Sum_probs=97.1

Q ss_pred             ecCCCcccC-CCCCCCCcccEEEcccCCccccCC-CCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCc
Q 038551           19 LAGVGLTEA-PSIGMWKETTRMSLMQNAIQNLTE-IPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL   96 (366)
Q Consensus        19 ~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l   96 (366)
                      +..+.+..+ ..+..+.+++.|++.+|.++.+.. ...+++|++|++++|.|..+..  +..++.|+.|++.+| .+..+
T Consensus        79 l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N-~i~~~  155 (414)
T KOG0531|consen   79 LRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGN-LISDI  155 (414)
T ss_pred             cchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccC-cchhc
Confidence            344445543 347778888888888888888877 5788888888888888888766  667778888888888 66655


Q ss_pred             chhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcc
Q 038551           97 PLGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFN  165 (366)
Q Consensus        97 ~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  165 (366)
                      .. +..++.|+.+++++|.+..+... ...+.+++.+++.+ +.+..+..  +..+..+..+++..|.+.
T Consensus       156 ~~-~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~-n~i~~i~~--~~~~~~l~~~~l~~n~i~  221 (414)
T KOG0531|consen  156 SG-LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGG-NSIREIEG--LDLLKKLVLLSLLDNKIS  221 (414)
T ss_pred             cC-CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccC-Cchhcccc--hHHHHHHHHhhcccccce
Confidence            54 45578888888888888877653 46778888888887 44444432  223333333344444443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.34  E-value=1.3e-08  Score=97.23  Aligned_cols=29  Identities=17%  Similarity=0.091  Sum_probs=19.4

Q ss_pred             cCCCcccCCCCCCCCcccEEEcccCCccc
Q 038551           20 AGVGLTEAPSIGMWKETTRMSLMQNAIQN   48 (366)
Q Consensus        20 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~   48 (366)
                      .+-+..+.-++..+..|++|.+.++++..
T Consensus        95 pa~~pt~pi~ifpF~sLr~LElrg~~L~~  123 (1096)
T KOG1859|consen   95 PARDPTEPISIFPFRSLRVLELRGCDLST  123 (1096)
T ss_pred             CCCCCCCCceeccccceeeEEecCcchhh
Confidence            34444443356678889999988887664

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.01  E-value=3.1e-06  Score=73.18  Aligned_cols=163  Identities=13%  Similarity=0.104  Sum_probs=101.4

Q ss_pred             CCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccchh-hHhHhhhcccCcccceeeeccccCC
Q 038551          150 DLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGA-LQRLLSYCRLGSISTQCLCLRHLNN  228 (366)
Q Consensus       150 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~l~~~~~l~~l~l~~L~~~~~~~  228 (366)
                      .++.++++++.+|.+++           +..+...+..+++|+.|+++.|...+ +..+.  ..+.+|....|+.++..-
T Consensus        69 ~~~~v~elDL~~N~iSd-----------WseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~~nl~~lVLNgT~L~w  135 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISD-----------WSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPLKNLRVLVLNGTGLSW  135 (418)
T ss_pred             Hhhhhhhhhcccchhcc-----------HHHHHHHHhcCccceEeeccCCcCCCccccCc--ccccceEEEEEcCCCCCh
Confidence            56788999999999987           77888899999999999999998774 22221  122333334444333322


Q ss_pred             CCCcchhhhccCCcCcEEEeccCccceEeccccccccccccCCCCCcceeeee----------------cccceeEEeec
Q 038551          229 SNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYK----------------ILKIEARDMAC  292 (366)
Q Consensus       229 ~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~----------------l~~l~~L~l~~  292 (366)
                      ....  +.+...|.+++|+++.|+++.+-.+....+.|-|     .+++|...                +++++.+-+. 
T Consensus       136 ~~~~--s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~-----~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~-  207 (418)
T KOG2982|consen  136 TQST--SSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWST-----EVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVC-  207 (418)
T ss_pred             hhhh--hhhhcchhhhhhhhccchhhhhccccccccccch-----hhhhhhcCCcHHHHHHHHHhHHhhcccchheeee-
Confidence            2222  2356788999999999988877666665555542     22222221                3333333333 


Q ss_pred             cC--------ccccccccccceEEeecCc---------ccCCcccccccCCCCCCCCce
Q 038551          293 TC--------SQYQACPRGLTKFEEHPLK---------RLECAELKELPLDCNHGLEQK  334 (366)
Q Consensus       293 ~c--------~~l~~~~~~L~~L~l~~~~---------~~~~~~L~~L~l~~n~~~~~~  334 (366)
                      .|        .+.+.||. +-.|.|.-+.         +.++++|+.|.++.+++.+.+
T Consensus       208 e~PlK~~s~ek~se~~p~-~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  208 EGPLKTESSEKGSEPFPS-LSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             cCcccchhhcccCCCCCc-chhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            33        23333666 6666666555         667788888888888876554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.99  E-value=5.7e-07  Score=68.83  Aligned_cols=109  Identities=15%  Similarity=0.225  Sum_probs=67.4

Q ss_pred             ccEEEcccCCccccCCC----CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEc
Q 038551           36 TTRMSLMQNAIQNLTEI----PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDI  111 (366)
Q Consensus        36 L~~L~l~~~~~~~l~~~----~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l  111 (366)
                      +-.++++.|++..++..    .+-.+|...++++|.++++|+.+-..++.++.+++++| .+..+|..+..++.|+.|++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNL  107 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhccc
Confidence            34455556655543333    34455666677777776666664445556777777776 66666666666677777777


Q ss_pred             cccccccccccccCCCCCCEEEcccccccCccChh
Q 038551          112 SWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQ  146 (366)
Q Consensus       112 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~  146 (366)
                      +.|.+...|+.+..+.+|..|+..+ +...+++..
T Consensus       108 ~~N~l~~~p~vi~~L~~l~~Lds~~-na~~eid~d  141 (177)
T KOG4579|consen  108 RFNPLNAEPRVIAPLIKLDMLDSPE-NARAEIDVD  141 (177)
T ss_pred             ccCccccchHHHHHHHhHHHhcCCC-CccccCcHH
Confidence            7776666666665566666666665 455555543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.98  E-value=1.2e-05  Score=49.65  Aligned_cols=13  Identities=23%  Similarity=0.350  Sum_probs=4.4

Q ss_pred             cEEEccCCCCccc
Q 038551           59 RTLFLPSNHLGTV   71 (366)
Q Consensus        59 ~~L~l~~~~~~~i   71 (366)
                      ++|++++|.|+++
T Consensus         4 ~~L~l~~N~i~~l   16 (44)
T PF12799_consen    4 EELDLSNNQITDL   16 (44)
T ss_dssp             SEEEETSSS-SSH
T ss_pred             eEEEccCCCCccc
Confidence            3333333333333

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.96  E-value=2.4e-07  Score=88.68  Aligned_cols=127  Identities=24%  Similarity=0.275  Sum_probs=68.1

Q ss_pred             CccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcc
Q 038551           57 RLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLE  135 (366)
Q Consensus        57 ~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~  135 (366)
                      .|.+.++++|.+..+..+ +.-++.|+.|+|++| ..+..- .+..+++|++||+++|.++.+|.. ...+. |+.|++.
T Consensus       165 ~L~~a~fsyN~L~~mD~S-Lqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDES-LQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHHhHHHH-HHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence            344555555555555444 555666666666666 333332 355566666666666666655542 22333 6666666


Q ss_pred             cccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccch
Q 038551          136 YTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFG  202 (366)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  202 (366)
                      + |.++.+-.  +.++.+|+.|+++.|-+.+            -.....+..+..|+.|.+.+|...
T Consensus       241 n-N~l~tL~g--ie~LksL~~LDlsyNll~~------------hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  241 N-NALTTLRG--IENLKSLYGLDLSYNLLSE------------HSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             c-cHHHhhhh--HHhhhhhhccchhHhhhhc------------chhhhHHHHHHHHHHHhhcCCccc
Confidence            5 45555433  5566666666666665543            133344444555555555555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.94  E-value=1.9e-05  Score=64.60  Aligned_cols=102  Identities=24%  Similarity=0.352  Sum_probs=76.0

Q ss_pred             cccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcch--hhcCCCCCcEEEcc
Q 038551           35 ETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPL--GIFNLVSLQHLDIS  112 (366)
Q Consensus        35 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~l~  112 (366)
                      ....+++++|++..++..+++++|.+|.++.|+|..|.+..-..+++|..|.+.+| .+..+.+  .+..+++|++|.+-
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeec
Confidence            45568888888888777788888899999998888888876666788888888888 4443321  24567888888888


Q ss_pred             ccccccccc----cccCCCCCCEEEcccc
Q 038551          113 WTGITTLPI----ELKYLVNLKCLNLEYT  137 (366)
Q Consensus       113 ~~~~~~l~~----~l~~l~~L~~L~l~~~  137 (366)
                      +|.++.-+.    .+..+++|+.||+..-
T Consensus       122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             CCchhcccCceeEEEEecCcceEeehhhh
Confidence            888775443    3677788888887663

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.86  E-value=2.7e-05  Score=48.00  Aligned_cols=40  Identities=33%  Similarity=0.442  Sum_probs=26.8

Q ss_pred             CCCCEEEccCCCCCCCcchhhcCCCCCcEEEcccccccccc
Q 038551           80 ASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLP  120 (366)
Q Consensus        80 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~  120 (366)
                      ++|++|++++| .++.+|+.+.++++|++|++++|+++.++
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            35777777777 66667766777777777777777776554

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.86  E-value=9e-06  Score=80.74  Aligned_cols=129  Identities=22%  Similarity=0.272  Sum_probs=63.1

Q ss_pred             CcccEEEcccCCccc--cC-CC-CCCCCccEEEccCCCCc--cccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCc
Q 038551           34 KETTRMSLMQNAIQN--LT-EI-PTCPRLRTLFLPSNHLG--TVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQ  107 (366)
Q Consensus        34 ~~L~~L~l~~~~~~~--l~-~~-~~~~~L~~L~l~~~~~~--~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~  107 (366)
                      .+|++|++++...-.  -+ .. ..+|.|+.|.+.+-.+.  ++.. .+.++++|..||++++ .++.+ .+++++++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~-lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQ-LCASFPNLRSLDISGT-NISNL-SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHH-HhhccCccceeecCCC-CccCc-HHHhccccHH
Confidence            356666665542211  01 11 45566666666665442  1111 2455666666666666 44444 4456666666


Q ss_pred             EEEcccccccccc--ccccCCCCCCEEEcccccccCccChh---h---hcCCcCCcEEEeecCCccc
Q 038551          108 HLDISWTGITTLP--IELKYLVNLKCLNLEYTFRLSRIPQQ---V---ISDLKMLRALRMFECGFNV  166 (366)
Q Consensus       108 ~L~l~~~~~~~l~--~~l~~l~~L~~L~l~~~~~~~~~~~~---~---~~~~~~L~~L~l~~~~~~~  166 (366)
                      .|.+.+=.+..-.  ..+.++++|++||++.. .....+..   .   -..+++|+.|+.+++.+..
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~-~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRD-KNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeecccc-ccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            6666554444222  12456666666666652 22221110   0   0135566666666655543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.78  E-value=3.3e-06  Score=64.75  Aligned_cols=106  Identities=26%  Similarity=0.355  Sum_probs=86.9

Q ss_pred             cEEEecCCCcccCC----CCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEcc
Q 038551           15 NFLVLAGVGLTEAP----SIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILS   88 (366)
Q Consensus        15 ~~~~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~   88 (366)
                      .++.+.+..+..++    .+.+-.+|+.+++++|.+..+|..  ...+.++.+++.+|.+.++|.. +..++.|+.++++
T Consensus        30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~  108 (177)
T KOG4579|consen   30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLR  108 (177)
T ss_pred             hhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccc
Confidence            34444455444342    245567899999999999999877  7778999999999999999999 8999999999999


Q ss_pred             CCCCCCCcchhhcCCCCCcEEEcccccccccccc
Q 038551           89 YNRSLENLPLGIFNLVSLQHLDISWTGITTLPIE  122 (366)
Q Consensus        89 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~  122 (366)
                      +| .+...|..+-.+.+|-+|+...+....+|..
T Consensus       109 ~N-~l~~~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  109 FN-PLNAEPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             cC-ccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence            99 7777887777799999999999988877754

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.74  E-value=4.9e-05  Score=62.26  Aligned_cols=98  Identities=22%  Similarity=0.270  Sum_probs=80.2

Q ss_pred             cEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCc---cccchhhcCCCCCCEEEccC
Q 038551           15 NFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLG---TVSNNFFHSMASLRVLILSY   89 (366)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~---~i~~~~~~~l~~L~~L~l~~   89 (366)
                      ..+++.++++...+.+..++.|.+|.+.+|.|+.+.+.  ...++|.+|.+.+|.+.   ++.+  +..|+.|++|.+-+
T Consensus        45 d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p--La~~p~L~~Ltll~  122 (233)
T KOG1644|consen   45 DAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP--LASCPKLEYLTLLG  122 (233)
T ss_pred             ceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch--hccCCccceeeecC
Confidence            45677888888889999999999999999999998766  78889999999999775   5555  67899999999999


Q ss_pred             CCCCCCcc----hhhcCCCCCcEEEccccc
Q 038551           90 NRSLENLP----LGIFNLVSLQHLDISWTG  115 (366)
Q Consensus        90 ~~~~~~l~----~~~~~l~~L~~L~l~~~~  115 (366)
                      | ..+...    ..+..+++|++||..+-.
T Consensus       123 N-pv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  123 N-PVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             C-chhcccCceeEEEEecCcceEeehhhhh
Confidence            9 444332    235678999999998743

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.67  E-value=5.5e-05  Score=64.82  Aligned_cols=138  Identities=23%  Similarity=0.283  Sum_probs=70.7

Q ss_pred             CCCCCCCcccEEEcccCCccc-cCCC-----CCCCCccEEEccCCCCccccchhh-------------cCCCCCCEEEcc
Q 038551           28 PSIGMWKETTRMSLMQNAIQN-LTEI-----PTCPRLRTLFLPSNHLGTVSNNFF-------------HSMASLRVLILS   88 (366)
Q Consensus        28 ~~~~~~~~L~~L~l~~~~~~~-l~~~-----~~~~~L~~L~l~~~~~~~i~~~~~-------------~~l~~L~~L~l~   88 (366)
                      +.+.+||+++.++++.|.|.. .|..     ++...|..|.+++|.++.+-..-+             ..-|.|++.+.+
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg  165 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG  165 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence            445666777777777666554 2222     555666666676665543322211             134566666666


Q ss_pred             CCCCCCCcc-----hhhcCCCCCcEEEcccccccc-----c-cccccCCCCCCEEEcccccccCccC---hhhhcCCcCC
Q 038551           89 YNRSLENLP-----LGIFNLVSLQHLDISWTGITT-----L-PIELKYLVNLKCLNLEYTFRLSRIP---QQVISDLKML  154 (366)
Q Consensus        89 ~~~~~~~l~-----~~~~~l~~L~~L~l~~~~~~~-----l-~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~~L  154 (366)
                      .| ++..-|     ..+....+|+++.+..|.+..     + .-++..+.+|+.||+..|.+...-.   ..++...+.|
T Consensus       166 rN-Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l  244 (388)
T COG5238         166 RN-RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL  244 (388)
T ss_pred             cc-hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence            66 333222     123333566666666666541     1 1124455666677766643222111   1123345556


Q ss_pred             cEEEeecCCccc
Q 038551          155 RALRMFECGFNV  166 (366)
Q Consensus       155 ~~L~l~~~~~~~  166 (366)
                      ++|.+..|-+..
T Consensus       245 rEL~lnDClls~  256 (388)
T COG5238         245 RELRLNDCLLSN  256 (388)
T ss_pred             hhccccchhhcc
Confidence            666666665553

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.66  E-value=0.0002  Score=66.11  Aligned_cols=82  Identities=20%  Similarity=0.267  Sum_probs=54.3

Q ss_pred             CCCCCcccEEEcccCCccccCCCCCCCCccEEEccCC-CCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcE
Q 038551           30 IGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSN-HLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQH  108 (366)
Q Consensus        30 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~-~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~  108 (366)
                      +..++++++|++++|.++.+|.  -.++|+.|.+.+| .+..+|.. +  .++|+.|++++|..+..+|.      .|+.
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~------sLe~  116 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPE------SVRS  116 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCch-h--hhhhhheEccCccccccccc------ccce
Confidence            3446788889998888888773  2336888888876 55666654 3  35788888888866666664      3566


Q ss_pred             EEccccc---ccccccc
Q 038551          109 LDISWTG---ITTLPIE  122 (366)
Q Consensus       109 L~l~~~~---~~~l~~~  122 (366)
                      |++..+.   +..+|.+
T Consensus       117 L~L~~n~~~~L~~LPss  133 (426)
T PRK15386        117 LEIKGSATDSIKNVPNG  133 (426)
T ss_pred             EEeCCCCCcccccCcch
Confidence            6666554   3345543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.49  E-value=0.00028  Score=65.14  Aligned_cols=88  Identities=17%  Similarity=0.295  Sum_probs=62.3

Q ss_pred             CCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcccc-ccccccccccCCCCCCEE
Q 038551           54 TCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWT-GITTLPIELKYLVNLKCL  132 (366)
Q Consensus        54 ~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~-~~~~l~~~l~~l~~L~~L  132 (366)
                      .+.++..|++++|.+..+|.  +  ..+|+.|.+++|..++.+|..+  ..+|++|++.+| .+..+|.      +|+.|
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L  117 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPV--L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSL  117 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCC--C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceE
Confidence            47889999999998888873  3  3469999999987777888655  368999999998 7777774      36666


Q ss_pred             Ecccc--cccCccChhhhcCCcCCcEEEee
Q 038551          133 NLEYT--FRLSRIPQQVISDLKMLRALRMF  160 (366)
Q Consensus       133 ~l~~~--~~~~~~~~~~~~~~~~L~~L~l~  160 (366)
                      ++..+  ..+..+|.       +|+.|.+.
T Consensus       118 ~L~~n~~~~L~~LPs-------sLk~L~I~  140 (426)
T PRK15386        118 EIKGSATDSIKNVPN-------GLTSLSIN  140 (426)
T ss_pred             EeCCCCCcccccCcc-------hHhheecc
Confidence            66542  22444444       35555553

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.49  E-value=9.4e-05  Score=73.65  Aligned_cols=108  Identities=19%  Similarity=0.207  Sum_probs=60.5

Q ss_pred             CCCCEEEcccccccCccC-hhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccchhhH
Q 038551          127 VNLKCLNLEYTFRLSRIP-QQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQ  205 (366)
Q Consensus       127 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  205 (366)
                      .+|++|++++...+..-. ...-.-+|+|+.|.+.+-.+..            ..+...+.++++|..|++++..+..+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~------------~dF~~lc~sFpNL~sLDIS~TnI~nl~  189 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN------------DDFSQLCASFPNLRSLDISGTNISNLS  189 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc------------hhHHHHhhccCccceeecCCCCccCcH
Confidence            466666666633322222 2211245777777777766653            234555566777777777776666665


Q ss_pred             hHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccC
Q 038551          206 RLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFN  251 (366)
Q Consensus       206 ~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  251 (366)
                      .+..+.+|+.     |.+.+.+......+..+..+++|+.||++..
T Consensus       190 GIS~LknLq~-----L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  190 GISRLKNLQV-----LSMRNLEFESYQDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             HHhccccHHH-----HhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence            5444444444     3333333333344445677777777877776

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.43  E-value=0.00078  Score=52.32  Aligned_cols=117  Identities=21%  Similarity=0.377  Sum_probs=46.8

Q ss_pred             CCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhcCCCCC
Q 038551           30 IGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIFNLVSL  106 (366)
Q Consensus        30 ~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L  106 (366)
                      +.++.+|+.+.+.. .+..++..  ..+.+|+.+.+..+ +..++..+|..+++|+.+.+..+  ...++ ..+..+.+|
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTE
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--ccccccccccccccc
Confidence            44556666666653 45555443  55556666666553 55666666666666666666543  22222 234456666


Q ss_pred             cEEEcccccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCC
Q 038551          107 QHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKML  154 (366)
Q Consensus       107 ~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L  154 (366)
                      +.+.+..+ +..++.. +.+. +|+.+.+..  .+..++...+.++++|
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL  128 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence            66666543 4444432 4444 666665543  3344444445555444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.28  E-value=1.1e-05  Score=69.14  Aligned_cols=98  Identities=22%  Similarity=0.264  Sum_probs=66.7

Q ss_pred             CCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcch--hhcCCCCCcEEE
Q 038551           33 WKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPL--GIFNLVSLQHLD  110 (366)
Q Consensus        33 ~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~  110 (366)
                      +.+++.|++.||.+.++.-..+|+.|++|.++-|+|+++.+  +..|++|++|+|..| .+..+-+  -+.++++|+.|.
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHh
Confidence            44667777888888877666778888888888888877766  677888888888887 5554432  246777777777


Q ss_pred             ccccccc-cccc-----cccCCCCCCEEE
Q 038551          111 ISWTGIT-TLPI-----ELKYLVNLKCLN  133 (366)
Q Consensus       111 l~~~~~~-~l~~-----~l~~l~~L~~L~  133 (366)
                      |..|... +-+.     .+.-+++|+.||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            7776543 2111     245666666665

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.10  E-value=3.3e-05  Score=66.31  Aligned_cols=101  Identities=26%  Similarity=0.214  Sum_probs=80.6

Q ss_pred             CCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcccccccccccc--ccCCCCCCE
Q 038551           54 TCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIE--LKYLVNLKC  131 (366)
Q Consensus        54 ~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~--l~~l~~L~~  131 (366)
                      .+.+.+.|++-+|.+++|.-  ...|+.|++|.|+-| .++.+.+ +..|++|++|.|..|.|..+.+.  +.++++|+.
T Consensus        17 dl~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvN-kIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVN-KISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHHhhhhcccCCCccHHHH--HHhcccceeEEeecc-ccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            34567788999999988765  778999999999999 6666654 78899999999999999877654  789999999


Q ss_pred             EEcccccccCccCh----hhhcCCcCCcEEE
Q 038551          132 LNLEYTFRLSRIPQ----QVISDLKMLRALR  158 (366)
Q Consensus       132 L~l~~~~~~~~~~~----~~~~~~~~L~~L~  158 (366)
                      |.+..|+-.+..+.    .++.-+++|++|+
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            99988766655543    3455678888774

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.03  E-value=0.00027  Score=60.37  Aligned_cols=81  Identities=32%  Similarity=0.288  Sum_probs=38.1

Q ss_pred             CCCccEEEccCCCCccccchhhcCCCCCCEEEccCC--CCCCCcchhhcCCCCCcEEEccccccccccc--cccCCCCCC
Q 038551           55 CPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYN--RSLENLPLGIFNLVSLQHLDISWTGITTLPI--ELKYLVNLK  130 (366)
Q Consensus        55 ~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~--~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~--~l~~l~~L~  130 (366)
                      ...|+.+++.+..++++-.  +..+++|+.|.++.|  +....++....++++|+++.+++|+++.+..  .+..+.+|.
T Consensus        42 ~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             ccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            3344444444444433322  444555555555555  2223333333344566666666665543221  134455555


Q ss_pred             EEEcccc
Q 038551          131 CLNLEYT  137 (366)
Q Consensus       131 ~L~l~~~  137 (366)
                      .|++.+|
T Consensus       120 ~Ldl~n~  126 (260)
T KOG2739|consen  120 SLDLFNC  126 (260)
T ss_pred             hhhcccC
Confidence            5555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.96  E-value=0.00032  Score=67.53  Aligned_cols=110  Identities=23%  Similarity=0.151  Sum_probs=53.3

Q ss_pred             CCCCCEEEccCCCCCCC--cchhhcCCCCCcEEEcccc--ccccc----cccccCCCCCCEEEcccccccCccChhhhc-
Q 038551           79 MASLRVLILSYNRSLEN--LPLGIFNLVSLQHLDISWT--GITTL----PIELKYLVNLKCLNLEYTFRLSRIPQQVIS-  149 (366)
Q Consensus        79 l~~L~~L~l~~~~~~~~--l~~~~~~l~~L~~L~l~~~--~~~~l----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-  149 (366)
                      ++.|+.+.+..+..++.  +-.....+++|+.|+++++  .+...    ......+.+|+.+++.+|..+++.....+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            55566666665544443  2233445566666666552  11111    112344456666666665444443322222 


Q ss_pred             CCcCCcEEEeecCC-ccccccccccccCCchhhhhhhhcCcccceeeecccc
Q 038551          150 DLKMLRALRMFECG-FNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQS  200 (366)
Q Consensus       150 ~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  200 (366)
                      .+++|++|.+.+|. +++            .........++.|++|++++..
T Consensus       267 ~c~~L~~L~l~~c~~lt~------------~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTD------------EGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hCCCcceEccCCCCccch------------hHHHHHHHhcCcccEEeeecCc
Confidence            35666666655555 342            2333333445556666665443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.81  E-value=0.0058  Score=47.32  Aligned_cols=102  Identities=18%  Similarity=0.310  Sum_probs=53.5

Q ss_pred             CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcEEEccccccccccc-cccCCCCCC
Q 038551           53 PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIFNLVSLQHLDISWTGITTLPI-ELKYLVNLK  130 (366)
Q Consensus        53 ~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~  130 (366)
                      ..+.+|+.+.+.. .+..+....|..+++|+.+.+..+  +..++ ..+.++..++.+.+.. .+..++. .+..+++|+
T Consensus         9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             hCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            4666777777764 566777777777878888887765  44444 3456666778777765 4444444 356677777


Q ss_pred             EEEcccccccCccChhhhcCCcCCcEEEeec
Q 038551          131 CLNLEYTFRLSRIPQQVISDLKMLRALRMFE  161 (366)
Q Consensus       131 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  161 (366)
                      .+++.. + +..++...+.++ +|+.+.+..
T Consensus        85 ~i~~~~-~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   85 NIDIPS-N-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             EEEETT-T--BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccCc-c-ccEEchhhhcCC-CceEEEECC
Confidence            777764 2 555555556666 777776654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.54  E-value=0.00093  Score=64.35  Aligned_cols=133  Identities=23%  Similarity=0.183  Sum_probs=86.3

Q ss_pred             CCCCCccEEEccCC-CCcc--ccchhhcCCCCCCEEEccCC-CCCCCcc----hhhcCCCCCcEEEccccc-cccc--cc
Q 038551           53 PTCPRLRTLFLPSN-HLGT--VSNNFFHSMASLRVLILSYN-RSLENLP----LGIFNLVSLQHLDISWTG-ITTL--PI  121 (366)
Q Consensus        53 ~~~~~L~~L~l~~~-~~~~--i~~~~~~~l~~L~~L~l~~~-~~~~~l~----~~~~~l~~L~~L~l~~~~-~~~l--~~  121 (366)
                      ..++.|+.+.+.++ .+..  +.+. ...++.|+.|+++++ ......+    .....+.+|+.|+++.+. ++..  ..
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~  263 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDAL-ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA  263 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHH-HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence            45788999988887 5544  3233 667999999999873 2222222    223567889999999986 5522  22


Q ss_pred             cccCCCCCCEEEcccccccCccC-hhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeec
Q 038551          122 ELKYLVNLKCLNLEYTFRLSRIP-QQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTIT  197 (366)
Q Consensus       122 ~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  197 (366)
                      ....+++|++|.+.+|..+++.. ..+...++.|++|++.+|....           .........++++|+.+.+.
T Consensus       264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~-----------d~~l~~~~~~c~~l~~l~~~  329 (482)
T KOG1947|consen  264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT-----------DSGLEALLKNCPNLRELKLL  329 (482)
T ss_pred             HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch-----------HHHHHHHHHhCcchhhhhhh
Confidence            23458899999988887544433 2334578899999999987653           12333334456666665543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.32  E-value=0.0032  Score=53.89  Aligned_cols=104  Identities=26%  Similarity=0.311  Sum_probs=76.1

Q ss_pred             CCCcccEEEcccCCccccCCCCCCCCccEEEccCC--CCc-cccchhhcCCCCCCEEEccCCCCCCCcc--hhhcCCCCC
Q 038551           32 MWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSN--HLG-TVSNNFFHSMASLRVLILSYNRSLENLP--LGIFNLVSL  106 (366)
Q Consensus        32 ~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~--~~~-~i~~~~~~~l~~L~~L~l~~~~~~~~l~--~~~~~l~~L  106 (366)
                      .+..|+.+++.+..++.+...+.+++|+.|.++.|  .+. .++.. ...+++|+++++++| .+..+.  ..+..+.+|
T Consensus        41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGN-KIKDLSTLRPLKELENL  118 (260)
T ss_pred             cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCC-ccccccccchhhhhcch
Confidence            35678888888888888777788999999999999  332 34443 445699999999999 655322  125667788


Q ss_pred             cEEEccccccccccc----cccCCCCCCEEEcccc
Q 038551          107 QHLDISWTGITTLPI----ELKYLVNLKCLNLEYT  137 (366)
Q Consensus       107 ~~L~l~~~~~~~l~~----~l~~l~~L~~L~l~~~  137 (366)
                      ..|++..|..+.+-.    .+.-+++|.+|+-...
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            899999887764422    3677888988887763

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.47  E-value=0.0073  Score=30.90  Aligned_cols=17  Identities=35%  Similarity=0.583  Sum_probs=8.2

Q ss_pred             CcEEEcccccccccccc
Q 038551          106 LQHLDISWTGITTLPIE  122 (366)
Q Consensus       106 L~~L~l~~~~~~~l~~~  122 (366)
                      |++|++++|.++.+|..
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            44455555544444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.88  E-value=0.027  Score=28.73  Aligned_cols=17  Identities=29%  Similarity=0.423  Sum_probs=8.0

Q ss_pred             ccEEEccCCCCccccch
Q 038551           58 LRTLFLPSNHLGTVSNN   74 (366)
Q Consensus        58 L~~L~l~~~~~~~i~~~   74 (366)
                      |++|++++|.++.+|++
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            44445555444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.80  E-value=0.042  Score=26.05  Aligned_cols=13  Identities=38%  Similarity=0.555  Sum_probs=4.3

Q ss_pred             CcEEEcccccccc
Q 038551          106 LQHLDISWTGITT  118 (366)
Q Consensus       106 L~~L~l~~~~~~~  118 (366)
                      |++|++++|+++.
T Consensus         3 L~~L~l~~n~L~~   15 (17)
T PF13504_consen    3 LRTLDLSNNRLTS   15 (17)
T ss_dssp             -SEEEETSS--SS
T ss_pred             cCEEECCCCCCCC
Confidence            4444444444433

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.39  E-value=0.035  Score=45.93  Aligned_cols=85  Identities=20%  Similarity=0.120  Sum_probs=47.0

Q ss_pred             CCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCc
Q 038551          153 MLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSL  232 (366)
Q Consensus       153 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~  232 (366)
                      .++.++-+++.+..             .-++.+..++.++.|.+....-...--+..+..+.. +++.|+++.|..+++.
T Consensus       102 ~IeaVDAsds~I~~-------------eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~-~L~~L~lsgC~rIT~~  167 (221)
T KOG3864|consen  102 KIEAVDASDSSIMY-------------EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAP-SLQDLDLSGCPRITDG  167 (221)
T ss_pred             eEEEEecCCchHHH-------------HHHHHHhccchhhhheeccccchhhHHHHHhccccc-chheeeccCCCeechh
Confidence            35566666666654             445555566666666655443322222222333333 4666777777777777


Q ss_pred             chhhhccCCcCcEEEeccC
Q 038551          233 SVFAFASLRHLRTLQLYFN  251 (366)
Q Consensus       233 ~~~~l~~~~~L~~L~l~~~  251 (366)
                      .+.-+..+++|+.|.+.+-
T Consensus       168 GL~~L~~lknLr~L~l~~l  186 (221)
T KOG3864|consen  168 GLACLLKLKNLRRLHLYDL  186 (221)
T ss_pred             HHHHHHHhhhhHHHHhcCc
Confidence            6666666666666666554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.65  E-value=0.17  Score=26.79  Aligned_cols=21  Identities=38%  Similarity=0.613  Sum_probs=12.5

Q ss_pred             CCccEEEccCCCCccccchhh
Q 038551           56 PRLRTLFLPSNHLGTVSNNFF   76 (366)
Q Consensus        56 ~~L~~L~l~~~~~~~i~~~~~   76 (366)
                      ++|+.|++.+|.+..+|+++|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            455666666666666665544

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.65  E-value=0.17  Score=26.79  Aligned_cols=21  Identities=38%  Similarity=0.613  Sum_probs=12.5

Q ss_pred             CCccEEEccCCCCccccchhh
Q 038551           56 PRLRTLFLPSNHLGTVSNNFF   76 (366)
Q Consensus        56 ~~L~~L~l~~~~~~~i~~~~~   76 (366)
                      ++|+.|++.+|.+..+|+++|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            455666666666666665544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.76  E-value=0.055  Score=44.80  Aligned_cols=35  Identities=26%  Similarity=0.323  Sum_probs=16.5

Q ss_pred             CCCCEEEcccccccCccChhhhcCCcCCcEEEeec
Q 038551          127 VNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFE  161 (366)
Q Consensus       127 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  161 (366)
                      ++|+.|++++|..+++..-.-+.++++|+.|.+.+
T Consensus       151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             cchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence            45555555555555444333234444455444433

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=85.84  E-value=0.019  Score=54.99  Aligned_cols=162  Identities=25%  Similarity=0.235  Sum_probs=70.4

Q ss_pred             CCCCCcccEEEcccCCccc-----cCCC-CCC-CCccEEEccCCCCcc-----ccchhhcCCCCCCEEEccCCCCCC---
Q 038551           30 IGMWKETTRMSLMQNAIQN-----LTEI-PTC-PRLRTLFLPSNHLGT-----VSNNFFHSMASLRVLILSYNRSLE---   94 (366)
Q Consensus        30 ~~~~~~L~~L~l~~~~~~~-----l~~~-~~~-~~L~~L~l~~~~~~~-----i~~~~~~~l~~L~~L~l~~~~~~~---   94 (366)
                      +...+.|..|++++|.+..     +... ... ..+++|.+..|.++.     +... +.....+++++++.|....   
T Consensus       111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~-L~~~~~l~~l~l~~n~l~~~g~  189 (478)
T KOG4308|consen  111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV-LEKNEHLTELDLSLNGLIELGL  189 (478)
T ss_pred             hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH-HhcccchhHHHHHhcccchhhh
Confidence            3444555556666555543     1111 111 344455555554431     2222 3335556666666553221   


Q ss_pred             -Ccchhhc----CCCCCcEEEccccccc-----cccccccCCCC-CCEEEcccccccCccCh-hh---hcCC-cCCcEEE
Q 038551           95 -NLPLGIF----NLVSLQHLDISWTGIT-----TLPIELKYLVN-LKCLNLEYTFRLSRIPQ-QV---ISDL-KMLRALR  158 (366)
Q Consensus        95 -~l~~~~~----~l~~L~~L~l~~~~~~-----~l~~~l~~l~~-L~~L~l~~~~~~~~~~~-~~---~~~~-~~L~~L~  158 (366)
                       .++..+.    ...++++|++.+|.++     .+...+...+. +..+++.. +.+++... ..   +..+ ..+++++
T Consensus       190 ~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~-n~l~d~g~~~L~~~l~~~~~~l~~l~  268 (478)
T KOG4308|consen  190 LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS-NKLGDVGVEKLLPCLSVLSETLRVLD  268 (478)
T ss_pred             HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh-cCcchHHHHHHHHHhcccchhhhhhh
Confidence             1122222    3455566666655544     11122333333 44455555 23332210 00   2222 3455666


Q ss_pred             eecCCccccccccccccCCchhhhhhhhcCcccceeeeccccch
Q 038551          159 MFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFG  202 (366)
Q Consensus       159 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  202 (366)
                      +..|.++.         .+.......+..++.++.+.+..|...
T Consensus       269 l~~nsi~~---------~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  269 LSRNSITE---------KGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hhcCCccc---------cchHHHHHHHhhhHHHHHhhcccCccc
Confidence            66666554         112233344445556666666655554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=82.69  E-value=0.033  Score=47.11  Aligned_cols=83  Identities=18%  Similarity=0.106  Sum_probs=36.8

Q ss_pred             CCCCCcccEEEcccCCccccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcE
Q 038551           30 IGMWKETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQH  108 (366)
Q Consensus        30 ~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~  108 (366)
                      +..+...+.||++.|.+..+... ..+..+..++++.|.+...|.+ ++....++.+++..| .....|.+++..+++++
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKN-NHSQQPKSQKKEPHPKK  115 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhcc-chhhCCccccccCCcch
Confidence            33444455555554444433322 3333444444444444444444 444444444444444 34444444444444444


Q ss_pred             EEcccc
Q 038551          109 LDISWT  114 (366)
Q Consensus       109 L~l~~~  114 (366)
                      +++.++
T Consensus       116 ~e~k~~  121 (326)
T KOG0473|consen  116 NEQKKT  121 (326)
T ss_pred             hhhccC
Confidence            444444

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=82.42  E-value=0.027  Score=47.67  Aligned_cols=84  Identities=23%  Similarity=0.118  Sum_probs=57.0

Q ss_pred             CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEE
Q 038551           53 PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCL  132 (366)
Q Consensus        53 ~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L  132 (366)
                      ........||++.|.+...... |..++.|..|+++.| .+..+|..++....++.+++..|..+..|.+.+..+.++++
T Consensus        39 ~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN  116 (326)
T ss_pred             hccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence            4556666777777766554444 555666777777776 66677766666667777777777777777777777777777


Q ss_pred             Eccccc
Q 038551          133 NLEYTF  138 (366)
Q Consensus       133 ~l~~~~  138 (366)
                      +...+.
T Consensus       117 e~k~~~  122 (326)
T KOG0473|consen  117 EQKKTE  122 (326)
T ss_pred             hhccCc
Confidence            776643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	366
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		1e-06

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 117/279 (41%), Gaps = 66/279 (23%)
Query: 47  QNLTEIPT--CPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFN-L 103
           + LT IP+      + L L SN L ++ +  FH +  LR+L L+ N+ L+ LP GIF  L
Sbjct: 26  KKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKEL 84
Query: 104 VSLQHLDISWTGITTLPIEL-KYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFEC 162
            +L+ L ++   +  LPI +   LVNL  L L+   +L  +P +V   L  L  L +   
Sbjct: 85  KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSL--- 140
Query: 163 GFNVELEADSILFGDSXXXXXXXXXXXXXXXXTITLQSF--GALQRLLSYCRLGSISTQC 220
           G+N                                LQS   G   +L S   L       
Sbjct: 141 GYN-------------------------------ELQSLPKGVFDKLTSLKEL------- 162
Query: 221 LCLRHLNNS-NSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVF 279
              R  NN    +   AF  L  L+TL          K+D  +LKR+ E   F SL+K+ 
Sbjct: 163 ---RLYNNQLKRVPEGAFDKLTELKTL----------KLDNNQLKRVPE-GAFDSLEKL- 207
Query: 280 YKILKIEARDMACTCSQYQACPRGLTKFEEHPLKRLECA 318
            K+L+++     CTC+      + L K  +  L  ++ A
Sbjct: 208 -KMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTA 245

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	366
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	8e-04

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 98.3 bits (245), Expect = 8e-23
 Identities = 71/254 (27%), Positives = 108/254 (42%), Gaps = 24/254 (9%)

Query: 23  GLTEAPSIGMWKETTRMSLMQNAIQNLTE--IPTCPRLRTLFLPSNHLGTVSNNFFHSMA 80
                P  G+  ET  + L +N I+ L +    + P L  L L  N +  V    F+++ 
Sbjct: 22  RFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF 80

Query: 81  SLRVLILSYNRSLENLPLGIF-NLVSLQHLDISWTGITTLPIEL-KYLVNLKCLNLEYTF 138
           +LR L L  NR L+ +PLG+F  L +L  LDIS   I  L   + + L NLK L +    
Sbjct: 81  NLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN- 138

Query: 139 RLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITL 198
            L  I  +  S L  L  L + +C     +  ++        L+   L L+HLN+  I  
Sbjct: 139 DLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEA--LSHLHGLIV--LRLRHLNINAIRD 193

Query: 199 QSFGALQRL----LSYCRLGSIST----QCLCLRHLN-NSNSLSVF---AFASLRHLRTL 246
            SF  L RL    +S+       T      L L  L+    +L+     A   L +LR L
Sbjct: 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253

Query: 247 QLYFNDLEELKIDA 260
            L +N +  ++   
Sbjct: 254 NLSYNPISTIEGSM 267

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 79.0 bits (195), Expect = 3e-16
 Identities = 47/216 (21%), Positives = 77/216 (35%), Gaps = 27/216 (12%)

Query: 40  SLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLG 99
            +   A   L        L  L L   +L ++       +  L VL L +   +  +   
Sbjct: 142 YISHRAFSGL------NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN-INAIRDY 194

Query: 100 IF-NLVSLQHLDIS-WTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRAL 157
            F  L  L+ L+IS W  + T+     Y +NL  L++ +   L+ +P   +  L  LR L
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFL 253

Query: 158 RMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSIS 217
            +        +E       +   L E  + L    L  +   +F  L  L          
Sbjct: 254 NLSYNPI-STIEGSM--LHELLRLQE--IQLVGGQLAVVEPYAFRGLNYL---------- 298

Query: 218 TQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDL 253
            + L +   N   +L    F S+ +L TL L  N L
Sbjct: 299 -RVLNVSG-NQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 77.1 bits (190), Expect = 1e-15
 Identities = 49/238 (20%), Positives = 84/238 (35%), Gaps = 24/238 (10%)

Query: 37  TRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLE 94
           T++ + +N I  L +        L++L +  N L  +S+  F  + SL  L L     L 
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LT 165

Query: 95  NLPLGIF-NLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLK 152
           ++P     +L  L  L +    I  +     K L  LK L + +   L  +    +  L 
Sbjct: 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225

Query: 153 MLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCR 212
            L +L +  C     +   +        L    L L +  + TI       L RL     
Sbjct: 226 -LTSLSITHCNL-TAVPYLA--VRHLVYL--RFLNLSYNPISTIEGSMLHELLRL----- 274

Query: 213 LGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDA-GELKRIREI 269
                 Q + L        +  +AF  L +LR L +  N L  L+      +  +  +
Sbjct: 275 ------QEIQLVG-GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 89.3 bits (222), Expect = 2e-20
 Identities = 55/232 (23%), Positives = 88/232 (37%), Gaps = 24/232 (10%)

Query: 47  QNLTEIPTC--PRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR-SLENLPLGIF-N 102
           + LT +PT        L L SN L ++ +  F  +  L  L LS N  S +         
Sbjct: 17  KGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG 76

Query: 103 LVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQ-VISDLKMLRALRMFE 161
             SL++LD+S+ G+ T+      L  L+ L+ +++  L ++ +  V   L+ L  L +  
Sbjct: 77  TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISH 135

Query: 162 CGFNVELEADSILFGDSEVLVEELLVLKHLNLLTI----TLQSFGALQRL-LSYCRLGSI 216
               V       +F     L  E+L +   +               L  L LS C+L  +
Sbjct: 136 THTRV-AFNG--IFNGLSSL--EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190

Query: 217 STQCL----CLRHL----NNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDA 260
           S         L+ L    NN  SL  F +  L  L+ L    N +   K   
Sbjct: 191 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 37  TRMSLMQNAIQNLTEIPT---CPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSL 93
             +    + ++ ++E         L  L +   H     N  F+ ++SL VL ++ N   
Sbjct: 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163

Query: 94  ENLPLGIF-NLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDL 151
           EN    IF  L +L  LD+S   +  L       L +L+ LN+ +      +       L
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCL 222

Query: 152 KMLRALRM 159
             L+ L  
Sbjct: 223 NSLQVLDY 230

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 8/72 (11%)

Query: 48  NLTEIPTC-----PRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFN 102
            L ++          L+ L +  N+  ++    +  + SL+VL  S N  +         
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQ 244

Query: 103 --LVSLQHLDIS 112
               SL  L+++
Sbjct: 245 HFPSSLAFLNLT 256

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 88.1 bits (219), Expect = 7e-20
 Identities = 55/261 (21%), Positives = 100/261 (38%), Gaps = 27/261 (10%)

Query: 15  NFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTE--IPTCPRLRTLFLPSNHLGTVS 72
             +  + +GL + P   +  +T  + L  N I  + +        L TL L +N +  +S
Sbjct: 34  RVVQCSDLGLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS 92

Query: 73  NNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKC 131
              F  +  L  L LS N+ L+ LP  +    +LQ L +    IT +       L  +  
Sbjct: 93  PGAFAPLVKLERLYLSKNQ-LKELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIV 149

Query: 132 LNLEY-TFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKH 190
           + L     + S I       +K L  +R+ +          +I  G    L E  L L  
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT------TIPQGLPPSLTE--LHLDG 201

Query: 191 LNLLTITLQSFGALQRL----LSYCRLGSISTQCLC----LRHLN-NSNSLSVF--AFAS 239
             +  +   S   L  L    LS+  + ++    L     LR L+ N+N L       A 
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 261

Query: 240 LRHLRTLQLYFNDLEELKIDA 260
            ++++ + L+ N++  +  + 
Sbjct: 262 HKYIQVVYLHNNNISAIGSND 282

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 68.9 bits (169), Expect = 3e-13
 Identities = 37/235 (15%), Positives = 79/235 (33%), Gaps = 53/235 (22%)

Query: 48  NLTEIPTC--PRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR-SLENLPLGIF-NL 103
            L E+P      L+ L +  N +  V  + F+ +  + V+ L  N      +  G F  +
Sbjct: 111 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170

Query: 104 VSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECG 163
             L ++ I+ T ITT+P  L    +L  L+L+   +++++    +  L  L  L      
Sbjct: 171 KKLSYIRIADTNITTIPQGL--PPSLTELHLDGN-KITKVDAASLKGLNNLAKLG----- 222

Query: 164 FNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL----LSYCRLGSIS-- 217
                                   L   ++  +   S      L    L+  +L  +   
Sbjct: 223 ------------------------LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG 258

Query: 218 -TQCLCLRHLN-NSNSLSVF---------AFASLRHLRTLQLYFNDLEELKIDAG 261
                 ++ +  ++N++S                     + L+ N ++  +I   
Sbjct: 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 61.9 bits (151), Expect = 5e-11
 Identities = 36/203 (17%), Positives = 70/203 (34%), Gaps = 25/203 (12%)

Query: 56  PRLRTLFLPSNHLGT--VSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISW 113
            ++  + L +N L +  + N  F  M  L  + ++    +  +P G+    SL  L +  
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTELHLDG 201

Query: 114 TGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADS 172
             IT +    LK L NL  L L +   +S +    +++   LR L +     N +L    
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLN----NNKLVKVP 256

Query: 173 ILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNN---- 228
               D + +  +++ L + N+  I    F              +         L +    
Sbjct: 257 GGLADHKYI--QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV--------SLFSNPVQ 306

Query: 229 SNSLSVFAFASLRHLRTLQLYFN 251
              +    F  +     +QL   
Sbjct: 307 YWEIQPSTFRCVYVRAAVQLGNY 329

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 89.2 bits (221), Expect = 2e-19
 Identities = 37/265 (13%), Positives = 88/265 (33%), Gaps = 36/265 (13%)

Query: 23  GLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASL 82
               + S+    +   +  + N +++L    T  +L  L L  N +  +  +F      +
Sbjct: 562 EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQV 621

Query: 83  RVLILSYNRSLENLP--LGIFNLVSLQHLDISWTGITTLPIEL------KYLVNLKCLNL 134
             L  S+N+ L+ +P      ++  +  +D S+  I +    +         +N   + L
Sbjct: 622 EGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680

Query: 135 EYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNL- 193
            Y   + + P ++ +    +  + +        +  +S      +   +   +L  ++L 
Sbjct: 681 SYN-EIQKFPTELFATGSPISTIILSNNLMT-SIPENS--LKPKDGNYKNTYLLTTIDLR 736

Query: 194 ---LT-----ITLQSFGALQRL-LSYCRLGSIST---QCLCLRHLNNSNSLSVF------ 235
              LT         +   L  + +SY    S  T       L+     +           
Sbjct: 737 FNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILR 796

Query: 236 ----AFASLRHLRTLQLYFNDLEEL 256
                  +   L  LQ+  ND+ ++
Sbjct: 797 QWPTGITTCPSLIQLQIGSNDIRKV 821

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 71.4 bits (175), Expect = 1e-13
 Identities = 31/233 (13%), Positives = 62/233 (26%), Gaps = 56/233 (24%)

Query: 48  NLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQ 107
             T                         + ++  L  + L    ++  LP  +++L  LQ
Sbjct: 459 PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518

Query: 108 HLDIS----------WTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQV-ISDLKMLRA 156
            L+I+              T L  +      ++   + Y   L   P    +  +  L  
Sbjct: 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGL 577

Query: 157 LRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL----LSYCR 212
           L                                  N +   L++FG   +L    L Y +
Sbjct: 578 LDC------------------------------VHNKVR-HLEAFGTNVKLTDLKLDYNQ 606

Query: 213 LGSISTQCLC----LRHLN-NSNSLSV----FAFASLRHLRTLQLYFNDLEEL 256
           +  I          +  L  + N L      F   S+  + ++   +N +   
Sbjct: 607 IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSE 659

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 70.3 bits (172), Expect = 3e-13
 Identities = 35/240 (14%), Positives = 79/240 (32%), Gaps = 34/240 (14%)

Query: 37  TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNF------FHSMASLRVLILSYN 90
               L+Q+AI    E+    +   + L    +G ++N           +  L+++  + +
Sbjct: 399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS 458

Query: 91  RSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISD 150
                  + +    +               +    L +L  + L     ++++P   + D
Sbjct: 459 P-FTYDNIAVDWEDANSDYAKQ---YENEELSWSNLKDLTDVELYNCPNMTQLPD-FLYD 513

Query: 151 LKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSY 210
           L  L++L +     N    + + L  D   L ++      + +              + Y
Sbjct: 514 LPELQSLNI---ACN-RGISAAQLKADWTRLADDEDTGPKIQIFY------------MGY 557

Query: 211 CRLGSIST-----QCLCLRHLN-NSNSLSVF-AFASLRHLRTLQLYFNDLEELKIDAGEL 263
             L          + + L  L+   N +    AF +   L  L+L +N +EE+  D    
Sbjct: 558 NNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAF 617

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.1 bits (161), Expect = 6e-12
 Identities = 31/217 (14%), Positives = 58/217 (26%), Gaps = 51/217 (23%)

Query: 54  TCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR-------SLENLPLGIFNLVSL 106
                 T+ L  N +       F + + +  +ILS N        SL+       N   L
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 107 QHLDISWTGITTLPIELKY--LVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGF 164
             +D+ +  +T+L  + +   L  L  +++ Y    S  P Q   +   L+A  +     
Sbjct: 731 TTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQ-PLNSSQLKAFGI----- 783

Query: 165 NVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLR 224
                                   +   +L            L                 
Sbjct: 784 ------------------RHQRDAEGNRILRQWPTGITTCPSL----------------I 809

Query: 225 HLN-NSNSLSVFAFASLRHLRTLQLYFNDLEELKIDA 260
            L   SN +          L  L +  N    + + +
Sbjct: 810 QLQIGSNDIRKVDEKLTPQLYILDIADNPNISIDVTS 846

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.4 bits (154), Expect = 4e-11
 Identities = 23/196 (11%), Positives = 56/196 (28%), Gaps = 9/196 (4%)

Query: 66  NHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIEL-K 124
           +  G        +   +  L L+   +   +P  I  L  L+ L       T        
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 125 YLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEE 184
             +                 +  +   + L    + +   N   E   I   DS + +++
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK-DSRISLKD 427

Query: 185 LLVLKHLNLLTITLQSFGALQRL----LSYCRLGSISTQCLCLRHLNNSNSLSVF---AF 237
             +    N +T   ++   L +L     +       +         ++          ++
Sbjct: 428 TQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487

Query: 238 ASLRHLRTLQLYFNDL 253
           ++L+ L  ++LY    
Sbjct: 488 SNLKDLTDVELYNCPN 503

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 34/259 (13%), Positives = 69/259 (26%), Gaps = 56/259 (21%)

Query: 51  EIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR------------------- 91
           ++    R+  L L          +    +  L+VL    +                    
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 92  -SLENLPLGIFNLV-----SLQHLDISWTGITTLPIELKYLVNLKCLNLEYTF------R 139
                + +    +       L   D+    I   P E+K +     ++L+ T       R
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP-EMKPIKKDSRISLKDTQIGNLTNR 436

Query: 140 LSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQ 199
           ++ I +  I  L  L+ +      F            D+  +  E     +         
Sbjct: 437 ITFISKA-IQRLTKLQIIYFANSPFT----------YDNIAVDWEDANSDYAKQYENEEL 485

Query: 200 SFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKID 259
           S+  L+ L             + L +  N   L       L  L++L +  N        
Sbjct: 486 SWSNLKDL-----------TDVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQL 533

Query: 260 AGELKRI-REICGFHSLQK 277
             +  R+  +      +Q 
Sbjct: 534 KADWTRLADDEDTGPKIQI 552

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 5e-08
 Identities = 23/119 (19%), Positives = 38/119 (31%), Gaps = 18/119 (15%)

Query: 28  PSIGMWKETTRMSLMQNAIQNLTEIP------TCPRLRTLFLPSNHLGTVSNNFFHSMAS 81
            +       T + L  N    LT +       T P L  + +  N   +       + + 
Sbjct: 722 GNYKNTYLLTTIDLRFN---KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL-NSSQ 777

Query: 82  LRVLILSYNRSLEN------LPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNL 134
           L+   + + R  E        P GI    SL  L I    I  +  +L     L  L++
Sbjct: 778 LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDI 834

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 86.2 bits (214), Expect = 2e-19
 Identities = 61/235 (25%), Positives = 88/235 (37%), Gaps = 27/235 (11%)

Query: 23  GLTEAPSIGMWKETTRMSLMQNAIQNLTE--IPTCPRLRTLFLPSNHLGTVSNNFFHSMA 80
           GL   P  G+   + R+ L  N I ++       C  L  L+L SN L  +    F  +A
Sbjct: 22  GLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA 80

Query: 81  SLRVLILSYNRSLENLPLGIF-NLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTF 138
            L  L LS N  L ++    F  L  L  L +   G+  L     + L  L+ L L+   
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN- 139

Query: 139 RLSRIPQQVISDLKMLRALRMFECGFN--VELEADSILFGDSEVLVEELLVLKHLNLLTI 196
            L  +P     DL  L  L +     N    +   +  F     L    L+L    +  +
Sbjct: 140 ALQALPDDTFRDLGNLTHLFL---HGNRISSVPERA--FRGLHSLDR--LLLHQNRVAHV 192

Query: 197 TLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFN 251
              +F  L RL             L L   NN ++L   A A LR L+ L+L  N
Sbjct: 193 HPHAFRDLGRL-----------MTLYLFA-NNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 39/216 (18%), Positives = 59/216 (27%), Gaps = 66/216 (30%)

Query: 47  QNLTEIPTC--PRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLV 104
           Q L  +P       + +FL  N +  V    F +  +L +L L  N  L  +    F   
Sbjct: 21  QGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFT-- 77

Query: 105 SLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGF 164
                                L  L+ L+L    +L  +       L  L  L +  C  
Sbjct: 78  --------------------GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-- 115

Query: 165 NVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLR 224
                                       L  +    F  L  L           Q L L+
Sbjct: 116 ---------------------------GLQELGPGLFRGLAAL-----------QYLYLQ 137

Query: 225 HLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDA 260
             N   +L    F  L +L  L L+ N +  +   A
Sbjct: 138 D-NALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 86.6 bits (215), Expect = 5e-19
 Identities = 36/227 (15%), Positives = 77/227 (33%), Gaps = 29/227 (12%)

Query: 48  NLTEIPT-----CPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF- 101
            + ++P        ++  L L    +  +    F    +++ L + +N  +  LP  +F 
Sbjct: 56  TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQ 114

Query: 102 NLVSLQHLDISWTGITTLPIEL-KYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMF 160
           N+  L  L +    +++LP  +      L  L++     L RI          L+ L++ 
Sbjct: 115 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLS 173

Query: 161 ECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL----LSYCRLGSI 216
                            + V +  +  L H N+    L +      +     S+  +  +
Sbjct: 174 SNRL-------------THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV 220

Query: 217 STQCLC-LRHLN-NSNSL-SVFAFASLRHLRTLQLYFNDLEELKIDA 260
                  L  L    N+L       +   L  + L +N+LE++    
Sbjct: 221 RGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHP 267

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 83.6 bits (207), Expect = 5e-18
 Identities = 45/223 (20%), Positives = 86/223 (38%), Gaps = 17/223 (7%)

Query: 40  SLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLG 99
              Q+      +I T    + +   ++ +  +      S   + +L L+  + +E +   
Sbjct: 30  MQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTY 87

Query: 100 IF-NLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRAL 157
            F    ++Q L + +  I  LP    + +  L  L LE    LS +P+ +  +   L  L
Sbjct: 88  AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTL 146

Query: 158 RMFECGFN--VELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL-LSYCRLG 214
            M     N    +E D   F  +  L    L L    L  + L    +L    +SY  L 
Sbjct: 147 SM---SNNNLERIEDD--TFQATTSLQN--LQLSSNRLTHVDLSLIPSLFHANVSYNLLS 199

Query: 215 SISTQCLCLRHLN-NSNSLSVFAFASLRHLRTLQLYFNDLEEL 256
           +++   + +  L+ + NS++V        L  L+L  N+L + 
Sbjct: 200 TLAIP-IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT 241

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 81.2 bits (201), Expect = 3e-17
 Identities = 45/240 (18%), Positives = 83/240 (34%), Gaps = 37/240 (15%)

Query: 48  NLTEIPT-----CPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF- 101
            + EI T        ++ L++  N +  +  + F ++  L VL+L  N  L +LP GIF 
Sbjct: 80  QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFH 138

Query: 102 NLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLR----A 156
           N   L  L +S   +  +  +  +   +L+ L L    RL+ +   +I  L         
Sbjct: 139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNL 197

Query: 157 LRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL-LSYCRLGS 215
           L        VE                  L   H ++  +       L  L L +  L  
Sbjct: 198 LSTLAIPIAVEE-----------------LDASHNSINVVRGPVNVELTILKLQHNNLTD 240

Query: 216 IST--QCLCLRHLNNSN----SLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREI 269
            +       L  ++ S      +    F  ++ L  L +  N L  L +    +  ++ +
Sbjct: 241 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 300

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 77.8 bits (192), Expect = 5e-16
 Identities = 50/242 (20%), Positives = 79/242 (32%), Gaps = 42/242 (17%)

Query: 48  NLTEIPT-----CPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF- 101
            +  +P       P L  L L  N L ++    FH+   L  L +S N  LE +    F 
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQ 162

Query: 102 NLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFE 161
              SLQ+L +S   +T + + L  + +L   N+ Y   LS +          +  L    
Sbjct: 163 ATTSLQNLQLSSNRLTHVDLSL--IPSLFHANVSYN-LLSTLA-----IPIAVEELDASH 214

Query: 162 CGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL-------LSYCRLG 214
                           + V     + L  L L    L     L          LSY  L 
Sbjct: 215 NSI-------------NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE 261

Query: 215 SISTQCLC----LRHLN-NSNSLSVF--AFASLRHLRTLQLYFNDLEELKIDAGELKRIR 267
            I          L  L  ++N L         +  L+ L L  N L  ++ +  +  R+ 
Sbjct: 262 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE 321

Query: 268 EI 269
            +
Sbjct: 322 NL 323

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 72.0 bits (177), Expect = 4e-14
 Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 2/119 (1%)

Query: 37  TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL 96
           T + L  N + +   +   P L  + L  N L  +  + F  M  L  L +S NR L  L
Sbjct: 229 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVAL 287

Query: 97  PLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLR 155
            L    + +L+ LD+S   +  +         L+ L L++   +  +       LK L 
Sbjct: 288 NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLKLSTHHTLKNLT 345

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 68.9 bits (169), Expect = 4e-13
 Identities = 53/228 (23%), Positives = 98/228 (42%), Gaps = 33/228 (14%)

Query: 48  NLTEIPT-----CPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFN 102
           +L+ +P       P+L TL + +N+L  + ++ F +  SL+ L LS NR L ++ L +  
Sbjct: 128 DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIP 186

Query: 103 LVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFEC 162
             SL H ++S+  ++TL I     + ++ L+  +   ++ +   V  +L +L+       
Sbjct: 187 --SLFHANVSYNLLSTLAI----PIAVEELDASHN-SINVVRGPVNVELTILK------L 233

Query: 163 GFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL----LSYCRLGSIS- 217
             N   +       +   LVE  + L +  L  I    F  +QRL    +S  RL +++ 
Sbjct: 234 QHNNLTDTAW--LLNYPGLVE--VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL 289

Query: 218 --TQCLCLRHLN-NSNSLSVF--AFASLRHLRTLQLYFNDLEELKIDA 260
                  L+ L+ + N L            L  L L  N +  LK+  
Sbjct: 290 YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLST 337

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 49/221 (22%), Positives = 78/221 (35%), Gaps = 34/221 (15%)

Query: 48  NLTEIPT-----CPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFN 102
           NL  I          L+ L L SN L  V  +   S   L    +SYN  L  L      
Sbjct: 152 NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS---LFHANVSYNL-LSTLA----I 203

Query: 103 LVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFEC 162
            ++++ LD S   I  +   +   V L  L L++   L+         L     L   + 
Sbjct: 204 PIAVEELDASHNSINVVRGPV--NVELTILKLQHN-NLTDTAW-----LLNYPGLVEVDL 255

Query: 163 GFN--VELEADSILFGDSEVLVEELLVLKH--LNLLTITLQSFGALQRL-LSYCRLGSIS 217
            +N   ++      F   + L  E L + +  L  L +  Q    L+ L LS+  L  + 
Sbjct: 256 SYNELEKIMYHP--FVKMQRL--ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVE 311

Query: 218 TQCLCLRHLN----NSNSLSVFAFASLRHLRTLQLYFNDLE 254
                   L     + NS+     ++   L+ L L  ND +
Sbjct: 312 RNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.8 bits (153), Expect = 5e-11
 Identities = 33/219 (15%), Positives = 77/219 (35%), Gaps = 17/219 (7%)

Query: 50  TEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF-NLVSLQH 108
           + +        + +              ++ + +++    +  +  LP  +  +   ++ 
Sbjct: 15  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQVEL 73

Query: 109 LDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVE 167
           L+++   I  +      Y   ++ L + +   +  +P  V  ++ +L  L +     +  
Sbjct: 74  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLS-S 131

Query: 168 LEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL----LSYCRLGSISTQCLC- 222
           L     +F ++  L    L + + NL  I   +F A   L    LS  RL  +    +  
Sbjct: 132 LPRG--IFHNTPKLTT--LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS 187

Query: 223 LRHLN-NSNSLSVFAFASLRHLRTLQLYFNDLEELKIDA 260
           L H N + N LS    A    +  L    N +  ++   
Sbjct: 188 LFHANVSYNLLS--TLAIPIAVEELDASHNSINVVRGPV 224

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 85.9 bits (213), Expect = 6e-19
 Identities = 55/272 (20%), Positives = 95/272 (34%), Gaps = 32/272 (11%)

Query: 23  GLTEAPSIGMWKETTRMSLMQNAIQNLTE--IPTCPRLRTLFLPSNHLGTVSNNFFHSMA 80
            L   PS G+ +    + L  N I  ++   +  C  L+ L L SN + T+  + F S+ 
Sbjct: 42  SLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100

Query: 81  SLRVLILSYNRSLENLPLGIF-NLVSLQHLDISWTGITTLP--IELKYLVNLKCLNLEYT 137
           SL  L LSYN  L NL    F  L SL  L++      TL       +L  L+ L +   
Sbjct: 101 SLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 159

Query: 138 FRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTIT 197
              ++I ++  + L  L  L +         E  S      + +    L+L     + + 
Sbjct: 160 DTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKS--LKSIQNVSH--LILHMKQHILLL 214

Query: 198 LQSFGALQRL---------LSYCRLGSIS-------TQCLCLRHLNNS-NSLSVF--AFA 238
                    +         L       +S        +    R++  +  SL        
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN 274

Query: 239 SLRHLRTLQLYFNDLEELKIDA-GELKRIREI 269
            +  L  L+   N L+ +       L  +++I
Sbjct: 275 QISGLLELEFSRNQLKSVPDGIFDRLTSLQKI 306

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.9 bits (174), Expect = 7e-14
 Identities = 38/224 (16%), Positives = 78/224 (34%), Gaps = 24/224 (10%)

Query: 37  TRMSLMQNAIQNLTEIPT-----CPRLRTLFLPSNHLGTVS-NNFFHSMASLRVLILSYN 90
             + L  N    L+ + +        L  L L  N   T+   + F  +  L++L +   
Sbjct: 103 EHLDLSYN---YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 159

Query: 91  RSLENLPLGIF-NLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVI 148
            +   +    F  L  L+ L+I  + + +   + LK + N+  L L    +   + +  +
Sbjct: 160 DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK-QHILLLEIFV 218

Query: 149 SDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLV-LKHLNLLTITLQSFGALQRL 207
                +  L + +       + D+  F +        L+       + IT +S   + +L
Sbjct: 219 DVTSSVECLELRD------TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL 272

Query: 208 LSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFN 251
           L+           L     N   S+    F  L  L+ + L+ N
Sbjct: 273 LNQIS----GLLELEFSR-NQLKSVPDGIFDRLTSLQKIWLHTN 311

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 83.8 bits (207), Expect = 9e-18
 Identities = 45/223 (20%), Positives = 87/223 (39%), Gaps = 17/223 (7%)

Query: 40  SLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLG 99
              Q+      +I T    + +   ++ +  +      S   + +L L+  + +E +   
Sbjct: 36  MQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTY 93

Query: 100 IF-NLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRAL 157
            F    ++Q L + +  I  LP    + +  L  L LE    LS +P+ +  +   L  L
Sbjct: 94  AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTL 152

Query: 158 RMFECGFN--VELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL-LSYCRLG 214
            M     N    +E D   F  +  L  + L L    L  + L    +L    +SY  L 
Sbjct: 153 SM---SNNNLERIEDD--TFQATTSL--QNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS 205

Query: 215 SISTQCLCLRHLN-NSNSLSVFAFASLRHLRTLQLYFNDLEEL 256
           +++   + +  L+ + NS++V        L  L+L  N+L + 
Sbjct: 206 TLAIP-IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT 247

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 83.1 bits (205), Expect = 1e-17
 Identities = 36/227 (15%), Positives = 77/227 (33%), Gaps = 29/227 (12%)

Query: 48  NLTEIPT-----CPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF- 101
            + ++P        ++  L L    +  +    F    +++ L + +N  +  LP  +F 
Sbjct: 62  TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQ 120

Query: 102 NLVSLQHLDISWTGITTLPIEL-KYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMF 160
           N+  L  L +    +++LP  +      L  L++     L RI          L+ L++ 
Sbjct: 121 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLS 179

Query: 161 ECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL----LSYCRLGSI 216
                            + V +  +  L H N+    L +      +     S+  +  +
Sbjct: 180 SNRL-------------THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV 226

Query: 217 STQCLC-LRHLN-NSNSL-SVFAFASLRHLRTLQLYFNDLEELKIDA 260
                  L  L    N+L       +   L  + L +N+LE++    
Sbjct: 227 RGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHP 273

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.3 bits (172), Expect = 2e-13
 Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 2/119 (1%)

Query: 37  TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL 96
           T + L  N + +   +   P L  + L  N L  +  + F  M  L  L +S NR L  L
Sbjct: 235 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVAL 293

Query: 97  PLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLR 155
            L    + +L+ LD+S   +  +         L+ L L++   +  +       LK L 
Sbjct: 294 NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLKLSTHHTLKNLT 351

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 68.4 bits (167), Expect = 9e-13
 Identities = 53/228 (23%), Positives = 98/228 (42%), Gaps = 33/228 (14%)

Query: 48  NLTEIPT-----CPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFN 102
           +L+ +P       P+L TL + +N+L  + ++ F +  SL+ L LS NR L ++ L +  
Sbjct: 134 DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIP 192

Query: 103 LVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFEC 162
             SL H ++S+  ++TL I     + ++ L+  +   ++ +   V  +L +L+       
Sbjct: 193 --SLFHANVSYNLLSTLAI----PIAVEELDASHN-SINVVRGPVNVELTILK------L 239

Query: 163 GFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL----LSYCRLGSIST 218
             N   +       +   LVE  + L +  L  I    F  +QRL    +S  RL +++ 
Sbjct: 240 QHNNLTDTAW--LLNYPGLVE--VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL 295

Query: 219 ---QCLCLRHLN-NSNSLSVF--AFASLRHLRTLQLYFNDLEELKIDA 260
                  L+ L+ + N L            L  L L  N +  LK+  
Sbjct: 296 YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLST 343

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 60.7 bits (147), Expect = 2e-10
 Identities = 36/211 (17%), Positives = 78/211 (36%), Gaps = 26/211 (12%)

Query: 64  PSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF------NLVSLQHLDISWTGIT 117
              ++      +    ++L+   + Y+  ++     ++       L + + +    + + 
Sbjct: 5   QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR 64

Query: 118 TLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFN--VELEADSIL 174
            LP   L     ++ LNL    ++  I     +    ++ L M   GFN    L     +
Sbjct: 65  KLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYM---GFNAIRYLPPH--V 118

Query: 175 FGDSEVLVEELLVLKHLNLLTITLQSFGALQRL----LSYCRLGSISTQCLC----LRHL 226
           F +  +L   +LVL+  +L ++    F    +L    +S   L  I          L++L
Sbjct: 119 FQNVPLL--TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176

Query: 227 N-NSNSLSVFAFASLRHLRTLQLYFNDLEEL 256
             +SN L+    + +  L    + +N L  L
Sbjct: 177 QLSSNRLTHVDLSLIPSLFHANVSYNLLSTL 207

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 83.2 bits (206), Expect = 1e-17
 Identities = 51/226 (22%), Positives = 81/226 (35%), Gaps = 47/226 (20%)

Query: 36  TTRMSLMQNAIQNLTE--IPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSL 93
              + L  N I  +    +  C  L+ L L S+ + T+  + F+S+ SL  L LS N  L
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-L 86

Query: 94  ENLPLGIF-NLVSLQHLDISWTGITTLPI--ELKYLVNLKCLNLEYTFRLSRIPQQVISD 150
            +L    F  L SL++L++      TL +      L NL+ L +      S I +   + 
Sbjct: 87  SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146

Query: 151 LKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSY 210
           L  L  L                              +K L+L     QS  +++ +   
Sbjct: 147 LTSLNELE-----------------------------IKALSLRNYQSQSLKSIRDI--- 174

Query: 211 CRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEEL 256
                     L L HL+ S  L       L  +R L+L   +L   
Sbjct: 175 --------HHLTL-HLSESAFLLEIFADILSSVRYLELRDTNLARF 211

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.4 bits (170), Expect = 3e-13
 Identities = 38/235 (16%), Positives = 84/235 (35%), Gaps = 16/235 (6%)

Query: 44  NAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF-N 102
           + +  L ++     +R L +P  +L    +  +  +  ++ + +  ++ +  +P     +
Sbjct: 275 DVVSELGKV-ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQH 332

Query: 103 LVSLQHLDISWTGITTLPIE----LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALR 158
           L SL+ LD+S   +    ++         +L+ L L     L  + +     L  L+ L 
Sbjct: 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQK-TGEILLTLKNLT 390

Query: 159 MFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL-LSYCRLGSIS 217
             +   N             E +    L L    +  +       L+ L +S   L S S
Sbjct: 391 SLDISRN-TFHPMPDSCQWPEKMRF--LNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS 447

Query: 218 TQCLCLRHLN-NSNSLSVF-AFASLRHLRTLQLYFNDLEELKIDA-GELKRIREI 269
                L+ L  + N L      +    L  +++  N L+ +       L  +++I
Sbjct: 448 LFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI 502

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 66.3 bits (162), Expect = 4e-12
 Identities = 44/233 (18%), Positives = 80/233 (34%), Gaps = 28/233 (12%)

Query: 37  TRMSLMQNAIQNLTE--IPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLE 94
            R+ + Q  +            +++ + + ++ +  V  +F   + SL  L LS N  + 
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL-MV 347

Query: 95  NLPLGIF----NLVSLQHLDISWTGITTLPIE---LKYLVNLKCLNLEYTFRLSRIPQQV 147
              L          SLQ L +S   + ++      L  L NL  L++        +P   
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDS- 405

Query: 148 ISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL 207
               + +R L +   G         ++       +E L V    N L         LQ L
Sbjct: 406 CQWPEKMRFLNLSSTGI-------RVVKTCIPQTLEVLDV--SNNNLDSFSLFLPRLQEL 456

Query: 208 -LSYCRLGSISTQCLC--LRHLN-NSNSLSVF---AFASLRHLRTLQLYFNDL 253
            +S  +L ++    L   L  +  + N L       F  L  L+ + L+ N  
Sbjct: 457 YISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 63.2 bits (154), Expect = 4e-11
 Identities = 30/237 (12%), Positives = 70/237 (29%), Gaps = 30/237 (12%)

Query: 38  RMSLMQNAIQNLTE--IPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLEN 95
            +  +   I  L+E     C          +    VS        ++R L +       +
Sbjct: 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301

Query: 96  LPLGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKML 154
           L      L  ++ + +  + +  +P    ++L +L+ L+L     +     +  +     
Sbjct: 302 LSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN-LMVEEYLKNSACKGAW 360

Query: 155 RALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL-LSYCRL 213
            +L+      N                      L+ +      L +   L  L +S    
Sbjct: 361 PSLQTLVLSQNH---------------------LRSMQKTGEILLTLKNLTSLDISRNTF 399

Query: 214 GSISTQCLCLRHLN----NSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRI 266
             +   C     +     +S  + V      + L  L +  N+L+   +    L+ +
Sbjct: 400 HPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQEL 456

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 32/235 (13%), Positives = 77/235 (32%), Gaps = 30/235 (12%)

Query: 56  PRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFN-LVSLQHLDISWT 114
             L  L + +  L    +    S+  +  L L  +     L     + L S+++L++  T
Sbjct: 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDT 206

Query: 115 GITTLPIELKYLVNLKCLNLEYTFRLSRIP-------QQVISDLKMLRALRMFECGFNVE 167
            +         +  +     +  FR S +         +++  +  L  +   +C  N  
Sbjct: 207 NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL 266

Query: 168 LEADSILFGDSEVLVE-ELLVLKHLNL--------LTITLQSFGALQRL-LSYCRLGSIS 217
            + +         L + E + ++ L++        L+        ++R+ +   ++  + 
Sbjct: 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP 326

Query: 218 TQCL----CLRHLNNS-NSLS------VFAFASLRHLRTLQLYFNDLEELKIDAG 261
                    L  L+ S N +            +   L+TL L  N L  ++    
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.7 bits (137), Expect = 5e-09
 Identities = 32/267 (11%), Positives = 82/267 (30%), Gaps = 38/267 (14%)

Query: 37  TRMSLMQNAIQNLTE--IPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLE 94
             + +   +++N     + +   +  L L  +    +   F   ++S+R L L    +L 
Sbjct: 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT-NLA 209

Query: 95  NLPLGIFNLVSLQH------------LDISWTGITTLPIELKYLVNLKCLNL--EYTFRL 140
                   +  +               D S+  +  L   +  L  ++  +         
Sbjct: 210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF 269

Query: 141 SRIPQQVISDLKMLR--ALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITL 198
           +     V+S+L  +    +R             S ++   E +  + + +++  +  +  
Sbjct: 270 NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV--KRITVENSKVFLVPC 327

Query: 199 QSFGALQRL----LSYCRLGSI-------STQCLCLRHLN-NSNSLS-----VFAFASLR 241
                L+ L    LS   +                L+ L  + N L           +L+
Sbjct: 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387

Query: 242 HLRTLQLYFNDLEELKIDAGELKRIRE 268
           +L +L +  N    +       +++R 
Sbjct: 388 NLTSLDISRNTFHPMPDSCQWPEKMRF 414

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 80.0 bits (198), Expect = 1e-17
 Identities = 36/237 (15%), Positives = 86/237 (36%), Gaps = 31/237 (13%)

Query: 23  GLTEAPSIGMWKETTRMSLMQNAIQNLTEIPT-----CPRLRTLFLPSN-HLGTVSNNFF 76
            +   PS+     T  + L++    +L  IP+      P +  +++  +  L  + ++ F
Sbjct: 22  DIQRIPSLP--PSTQTLKLIET---HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF 76

Query: 77  HSMASLRVLILSYNRSLENLPLGIF-NLVSLQHLDISWTGITTLP--IELKYLVNLKCLN 133
           ++++ +  + +   R+L  +       L  L+ L I  TG+   P   ++        L 
Sbjct: 77  YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILE 136

Query: 134 LEYTFRLSRIPQQVISDL-KMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLN 192
           +     ++ IP      L      L+++  GF   ++  +  F  +++    + + K+  
Sbjct: 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYA--FNGTKLD--AVYLNKNKY 191

Query: 193 LLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLY 249
           L  I   +FG +    S   +              +  +L       L+ L     +
Sbjct: 192 LTVIDKDAFGGVYSGPSLLDVSQ-----------TSVTALPSKGLEHLKELIARNTW 237

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.7 bits (205), Expect = 2e-17
 Identities = 55/255 (21%), Positives = 100/255 (39%), Gaps = 27/255 (10%)

Query: 23  GLTEAPSIGMWKETTRMSLMQNAIQNL--TEIPTCPRLRTLFLPSNHLGTVSNNFFHSMA 80
            LT+ P   +    T ++L  N ++ L         +L +L +  N +  +       + 
Sbjct: 15  KLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLP 73

Query: 81  SLRVLILSYNRSLENLPLGIF-NLVSLQHLDISWTGITTL-PIELKYLVNLKCLNLEYTF 138
            L+VL L +N  L  L    F    +L  L +    I  +         NL  L+L +  
Sbjct: 74  MLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN- 131

Query: 139 RLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITL 198
            LS         L+ L+ L +        L+++ +    +  L +  L L    +   + 
Sbjct: 132 GLSSTKLGTQVQLENLQELLLSNNKIQ-ALKSEELDIFANSSLKK--LELSSNQIKEFSP 188

Query: 199 QSFGALQRL----LSYCRLGSISTQCLC-------LRHLN-NSNSLSVF---AFASLR-- 241
             F A+ RL    L+  +LG   T+ LC       +R+L+ +++ LS      F  L+  
Sbjct: 189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWT 248

Query: 242 HLRTLQLYFNDLEEL 256
           +L  L L +N+L  +
Sbjct: 249 NLTMLDLSYNNLNVV 263

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.4 bits (204), Expect = 2e-17
 Identities = 55/255 (21%), Positives = 88/255 (34%), Gaps = 30/255 (11%)

Query: 48  NLTEIPT-----CPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF- 101
            L+++       C  L  L L SN +  + NN F    +L  L LS+N  L +  LG   
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQV 142

Query: 102 NLVSLQHLDISWTGITTLP---IELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALR 158
            L +LQ L +S   I  L    +++    +LK L L    ++          +  L  L 
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLF 201

Query: 159 MFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL------LSYCR 212
           +        L     L   +  +    L L +  L T +  +F  L+        LSY  
Sbjct: 202 LNNVQLGPSLTEKLCLELANTSIRN--LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 213 LGSISTQCLC----LRHL----NNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELK 264
           L  +          L +     NN   L   +   L ++R L L  +   +  I    L 
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS-FTKQSISLASLP 318

Query: 265 RI--REICGFHSLQK 277
           +I          L+ 
Sbjct: 319 KIDDFSFQWLKCLEH 333

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.8 bits (187), Expect = 4e-15
 Identities = 45/238 (18%), Positives = 83/238 (34%), Gaps = 24/238 (10%)

Query: 58  LRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF-NLVSLQHLDISWTGI 116
                +    L  + +  F  +  L  L +  N  +  +   +F  L++L++L +S +  
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSNMFTGLINLKYLSLSNSFT 365

Query: 117 TTLPIELKYLVNLKCLNLEYTF----RLSRIPQQVISDLKMLRALRMFECGFNVELEADS 172
           +   +  +  V+L    L        ++S+I     S L  L  L +       EL    
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425

Query: 173 ILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL----LSYCRLGSISTQCLCLRHLNN 228
             +   E + E  + L +   L +T  SF  +  L    L    L ++ +     + L N
Sbjct: 426 --WRGLENIFE--IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481

Query: 229 -------SNSLSVF---AFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQ 276
                  +N+++         L  L  L L  N+L  L   A     I  + G   L 
Sbjct: 482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.0 bits (177), Expect = 6e-14
 Identities = 47/224 (20%), Positives = 82/224 (36%), Gaps = 31/224 (13%)

Query: 48  NLTEIP-----TCPRLRTLFLPSNHL-GTVSNNFFHSMASLRVLILSYNRSLENLPLGIF 101
            +++I          L  L L  N +   ++   +  + ++  + LSYN+    L    F
Sbjct: 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSF 450

Query: 102 -NLVSLQHLDISW---TGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRAL 157
             + SLQ L +       + + P   + L NL  L+L     ++ I   ++  L+ L  L
Sbjct: 451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEIL 509

Query: 158 RMFECGFNVELEADSILFGDSEVLVEELLVLKHLNL-----LTITLQSFGALQRLLSYCR 212
            +        L   +   G    L + L  L  LNL       I ++ F  L  L     
Sbjct: 510 DLQHNNLA-RLWKHANPGGPIYFL-KGLSHLHILNLESNGFDEIPVEVFKDLFELKI--- 564

Query: 213 LGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEEL 256
                   + L   NN N+L    F +   L++L L  N +  +
Sbjct: 565 --------IDLGL-NNLNTLPASVFNNQVSLKSLNLQKNLITSV 599

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 49/253 (19%), Positives = 88/253 (34%), Gaps = 37/253 (14%)

Query: 37  TRMSLMQNAIQNLTEIP----TCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRS 92
             + L  N IQ L            L+ L L SN +   S   FH++  L  L L+  + 
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207

Query: 93  LENLPLGIF---NLVSLQHLDISWTGITTLP---IELKYLVNLKCLNLEYTFRLSRIPQQ 146
             +L   +       S+++L +S + ++T            NL  L+L Y   L+ +   
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN-NLNVVGND 266

Query: 147 VISDLKMLRALRMFECGFNVELEADSILFGDSEVLVE-------ELLVLKHLNLLTITLQ 199
             + L  L    +    +N      S        +             +   +L  I   
Sbjct: 267 SFAWLPQLEYFFL---EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323

Query: 200 SFGALQRL----LSYCRLGSISTQCLC----LRHLN-NSNSLSVF-----AFASLRH--L 243
           SF  L+ L    +    +  I +        L++L+ +++  S+       F SL H  L
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383

Query: 244 RTLQLYFNDLEEL 256
             L L  N + ++
Sbjct: 384 HILNLTKNKISKI 396

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 40/233 (17%), Positives = 79/233 (33%), Gaps = 25/233 (10%)

Query: 55  CPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLD---- 110
              L  L L  N+L  V N+ F  +  L    L YN         +  L ++++L+    
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306

Query: 111 -----ISWTGITTL-PIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGF 164
                IS   +  +     ++L  L+ LN+E    +  I   + + L  L+ L +     
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFT 365

Query: 165 NVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL----LSYCRL-GSISTQ 219
           ++    +      +   +  L  L    +  I   +F  L  L    L    +   ++ Q
Sbjct: 366 SLRTLTNETFVSLAHSPLHILN-LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

Query: 220 CLC----LRHLN-NSNSLSVF---AFASLRHLRTLQLYFNDLEELKIDAGELK 264
                  +  +  + N        +FA +  L+ L L    L+ +       +
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 29/131 (22%), Positives = 58/131 (44%), Gaps = 14/131 (10%)

Query: 40  SLMQNAIQNLTEIPT----CPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR---- 91
            L + A++N+   P+       L  L L +N++  ++++    +  L +L L +N     
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519

Query: 92  ---SLENLPLGIF-NLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQ 146
              +    P+     L  L  L++   G   +P+E  K L  LK ++L     L+ +P  
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPAS 578

Query: 147 VISDLKMLRAL 157
           V ++   L++L
Sbjct: 579 VFNNQVSLKSL 589

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 38/165 (23%), Positives = 67/165 (40%), Gaps = 20/165 (12%)

Query: 104 VSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECG 163
           VS +  D S   +T +P +L    N+  LNL +  +L R+P    +    L +L +    
Sbjct: 4   VSHEVADCSHLKLTQVPDDL--PTNITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 164 FNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL----LSYCRLGSISTQ 219
            + +LE +        +L  ++L L+H  L  ++ ++F     L    L    +  I   
Sbjct: 61  IS-KLEPEL--CQKLPML--KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115

Query: 220 CLC----LRHLN-NSNSLSVF---AFASLRHLRTLQLYFNDLEEL 256
                  L  L+ + N LS         L +L+ L L  N ++ L
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 4/103 (3%)

Query: 37  TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL 96
            R+    N    +  +     L  L L SN    +    F  +  L+++ L  N  L  L
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN-LNTL 575

Query: 97  PLGIF-NLVSLQHLDISWTGITTLPIEL--KYLVNLKCLNLEY 136
           P  +F N VSL+ L++    IT++  ++      NL  L++ +
Sbjct: 576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 80.5 bits (199), Expect = 1e-16
 Identities = 57/261 (21%), Positives = 93/261 (35%), Gaps = 35/261 (13%)

Query: 17  LVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFF 76
           + LAGV +     +    +   +S+++  ++    +   P L++L L  N          
Sbjct: 290 MSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISFK--K 346

Query: 77  HSMASLRVLILSYNR--SLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNL 134
            ++ SL  L LS N                SL+HLD+S+ G   +      L  L+ L+ 
Sbjct: 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDF 406

Query: 135 EYTFRLSRI-PQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNL 193
           +++  L R+        L+ L  L +      ++   D I  G        L  L  L +
Sbjct: 407 QHS-TLKRVTEFSAFLSLEKLLYLDISYTNTKIDF--DGIFLG--------LTSLNTLKM 455

Query: 194 ------LTITLQSFGALQRL----LSYCRLGSISTQCL----CLRHLN-NSNSLSVF--- 235
                        F     L    LS C+L  IS         L+ LN + N+L      
Sbjct: 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515

Query: 236 AFASLRHLRTLQLYFNDLEEL 256
            +  L  L TL   FN +E  
Sbjct: 516 HYNQLYSLSTLDCSFNRIETS 536

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 78.2 bits (193), Expect = 5e-16
 Identities = 40/254 (15%), Positives = 80/254 (31%), Gaps = 46/254 (18%)

Query: 48  NLTEIPT-----CPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF- 101
            +             L  L      L ++ +     + +L+ L +++N  + +  L  + 
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYF 149

Query: 102 -NLVSLQHLDISWTGITTLPIE-----------LKYL-----------------VNLKCL 132
            NL +L H+D+S+  I T+ +               L                 + L  L
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHEL 209

Query: 133 NLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSI---LFGDSEVLVEELLVLK 189
            L   F  S I +  + +L  L   R+    F  E   +     +      +  +   L 
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269

Query: 190 HLNLLTITLQSFGALQRL----LSYCRLGSIS--TQCLCLRHLN-NSNSLSVFAFASLRH 242
           + N  +  +  F  L  +    L+   +  +    +    + L+     L  F    L  
Sbjct: 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF 329

Query: 243 LRTLQLYFNDLEEL 256
           L++L L  N     
Sbjct: 330 LKSLTLTMNKGSIS 343

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.1 bits (185), Expect = 6e-15
 Identities = 53/266 (19%), Positives = 88/266 (33%), Gaps = 23/266 (8%)

Query: 4   RIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFL 63
            +       K   L +    L + P++ +      ++L  N      +    P L  L L
Sbjct: 299 YLEDVPKHFKWQSLSIIRCQLKQFPTLDL-PFLKSLTLTMNKGSISFKKVALPSLSYLDL 357

Query: 64  PSNHLGTVSNNFFHSMA--SLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLP- 120
             N L       +  +   SLR L LS+N     +      L  LQHLD   + +  +  
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTE 416

Query: 121 -IELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSE 179
                 L  L  L++ YT         +   L  L  L+M    F     ++  +F ++ 
Sbjct: 417 FSAFLSLEKLLYLDISYT-NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN--VFANTT 473

Query: 180 VLVEELLVLKHLNLLTITLQSFGALQRL----LSYCRLGSISTQCLC----LRHLN-NSN 230
            L    L L    L  I+   F  L RL    +S+  L  + +        L  L+ + N
Sbjct: 474 NL--TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531

Query: 231 SLSVF---AFASLRHLRTLQLYFNDL 253
            +           + L    L  N +
Sbjct: 532 RIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 42/250 (16%), Positives = 80/250 (32%), Gaps = 22/250 (8%)

Query: 36  TTRMSLMQNAIQNLTE--IPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSL 93
           T  + L  N ++ L          L+ L L    + T+ +  +H +  L  LIL+ N  +
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-I 92

Query: 94  ENLPLGIF-NLVSLQHLDISWTGITTLP-IELKYLVNLKCLNLEYTFRLSRIPQQVISDL 151
           ++   G F  L SL++L    T + +L    +  L+ LK LN+ + F  S       S+L
Sbjct: 93  QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 152

Query: 152 KMLRALRMFECGFNVELEADSILFGDSEVLVEEL------------LVLKHLNLLTITLQ 199
             L  + +           D     ++  +   L               + + L  +TL+
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLR 212

Query: 200 SFGALQRLLSYCRLGSISTQCLCL-----RHLNNSNSLSVFAFASLRHLRTLQLYFNDLE 254
                  ++  C           L     +   N           L  +   +       
Sbjct: 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN 272

Query: 255 ELKIDAGELK 264
           +   D  +  
Sbjct: 273 DFSDDIVKFH 282

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 79.8 bits (197), Expect = 2e-16
 Identities = 50/230 (21%), Positives = 88/230 (38%), Gaps = 33/230 (14%)

Query: 58  LRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF-NLVSLQHLDISWTGI 116
           +R L L    + ++++  F ++  L+VL L+YN+ +  +    F  L +LQ L++S+  +
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNLL 326

Query: 117 TTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFN---------- 165
             L       L  +  ++L+    ++ I  Q    L+ L+ L + +              
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD 385

Query: 166 VELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGA----LQRL-LSYCRLGSISTQC 220
           + L  + ++      L   L+ L    L  + +  F      LQ L L+  R  S S   
Sbjct: 386 IFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445

Query: 221 LC-----LRHLN-NSNSLSVF--------AFASLRHLRTLQLYFNDLEEL 256
                  L  L    N L +          F  L HL+ L L  N L  L
Sbjct: 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 72.9 bits (179), Expect = 4e-14
 Identities = 43/219 (19%), Positives = 76/219 (34%), Gaps = 14/219 (6%)

Query: 47  QNLTEIPTC-PRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF-NLV 104
            NLT++P        L L  N++ TV+ + F  +  L++L L    +   +    F NL 
Sbjct: 14  CNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP 73

Query: 105 SLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTF-RLSRIPQQVISDLKMLRALRMFEC 162
           +L+ LD+  + I  L  +  + L +L  L L +     + +      +LK L  L + + 
Sbjct: 74  NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133

Query: 163 GFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL-LSYCRLGSISTQCL 221
                    S  FG    L  + +      +  +       LQ   LS+  L + S    
Sbjct: 134 QIRSLYLHPS--FGKLNSL--KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS---- 185

Query: 222 CLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDA 260
            L    + +            L  L +  N         
Sbjct: 186 -LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGN 223

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 60.6 bits (147), Expect = 4e-10
 Identities = 49/241 (20%), Positives = 81/241 (33%), Gaps = 56/241 (23%)

Query: 48  NLTEIPTC-----PRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR--------SLE 94
            L E+ +      P++  + L  NH+  + +  F  +  L+ L L  N         S+ 
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIP 384

Query: 95  NLPLGIFNLVSL-------QHLDISWTGITTLPIE--LKYLVNLKCLNLEYTFRLSRIPQ 145
           ++ L    LV+L         + +S   +  L I   L  + +L+ L L      S    
Sbjct: 385 DIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD 444

Query: 146 QVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQ 205
           Q  S+   L  L + E                          L+      +    F  L 
Sbjct: 445 QTPSENPSLEQLFLGENM------------------------LQLAWETELCWDVFEGLS 480

Query: 206 RL----LSYCRLGSISTQCLC----LRHLN-NSNSLSVFAFASL-RHLRTLQLYFNDLEE 255
            L    L++  L S+          LR L+ NSN L+V +   L  +L  L +  N L  
Sbjct: 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLA 540

Query: 256 L 256
            
Sbjct: 541 P 541

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.1 bits (138), Expect = 4e-09
 Identities = 43/228 (18%), Positives = 83/228 (36%), Gaps = 39/228 (17%)

Query: 65  SNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF---NLVSLQHLDISWTGITTLPI 121
           SN +             +      ++  +++     F      S++HLD+S   + +L  
Sbjct: 225 SNAISKSQAFSLILAHHIMGAGFGFHN-IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS 283

Query: 122 E-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEV 180
              + L +LK LNL Y  ++++I  +    L  L+ L +    +N+  E  S  F     
Sbjct: 284 RVFETLKDLKVLNLAYN-KINKIADEAFYGLDNLQVLNL---SYNLLGELYSSNFYGLPK 339

Query: 181 LVEELLVLKHLNLLTITLQSFGALQRL-----------------------LSYCRLGSIS 217
           +    + L+  ++  I  Q+F  L++L                       LS  +L ++ 
Sbjct: 340 V--AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLP 397

Query: 218 TQCLCLRHLNNSN----SLSVFAF-ASLRHLRTLQLYFNDLEELKIDA 260
              L    ++ S     +L +  F   + HL+ L L  N       D 
Sbjct: 398 KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 56  PRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTG 115
             L+ L+L  N+L ++    F  + +LR L L+ NR L  L        +L+ LDIS   
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR-LTVLSHNDL-PANLEILDISRNQ 537

Query: 116 ITTLPIELKYLVNLKCLNLEY 136
           +          V+L  L++ +
Sbjct: 538 LLAPN--PDVFVSLSVLDITH 556

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 78.3 bits (193), Expect = 2e-16
 Identities = 43/220 (19%), Positives = 69/220 (31%), Gaps = 21/220 (9%)

Query: 47  QNLTEIPTC--PRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF-NL 103
             +TEIP+        L      L  +    F     L  + +S N  LE +   +F NL
Sbjct: 19  SKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL 78

Query: 104 VSLQHLDIS-WTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFE 161
             L  + I     +  +  E  + L NL+ L +  T  +  +P            L + +
Sbjct: 79  PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQD 137

Query: 162 CGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQ----RLLSYCRLGSIS 217
                 +E +S  F         L  L    +  I   +F   Q     L     L  + 
Sbjct: 138 NINIHTIERNS--FVGLSFESVILW-LNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELP 194

Query: 218 TQCL----CLRHLNNSN----SLSVFAFASLRHLRTLQLY 249
                       L+ S     SL  +   +L+ LR    Y
Sbjct: 195 NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 234

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 57/236 (24%), Positives = 87/236 (36%), Gaps = 28/236 (11%)

Query: 48  NLTEIPT----CPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF-N 102
           +L+E+P+       L+ L L +N    +      +  SL  L +  N     L  G   N
Sbjct: 289 HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348

Query: 103 LVSLQHLDISWTGITTLPI---ELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRM 159
           L +L+ LD+S   I T      +L+ L +L+ LNL Y      +  +   +   L  L +
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDL 407

Query: 160 FECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL----LSYCRLGS 215
                    +A S  F +  +L    L L H  L   + Q F  L  L    L       
Sbjct: 408 AFTRLK-VKDAQS-PFQNLHLLKV--LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463

Query: 216 ISTQCLC-------LRHLNNSN----SLSVFAFASLRHLRTLQLYFNDLEELKIDA 260
            + Q          L  L  S     S+   AF SL+ +  + L  N L    I+A
Sbjct: 464 GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 78.1 bits (193), Expect = 5e-16
 Identities = 41/230 (17%), Positives = 74/230 (32%), Gaps = 26/230 (11%)

Query: 48  NLTEIPT-----CPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF- 101
            L  +          L+ LF     + ++     H+  +L  L L  N  + ++ L    
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGF 150

Query: 102 NLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTF-RLSRIPQQVISDLKMLRALRM 159
               L+ LD     I  L  E +  L     L+L      ++ I      D  + ++L  
Sbjct: 151 PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPG-AFDSAVFQSLNF 209

Query: 160 FECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL------LSYCRL 213
                 + +        +S +    L   + ++   I+   F  L  +      L     
Sbjct: 210 GGTQNLLVIFKG---LKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

Query: 214 GSISTQCLC----LRHLN-NSNSLSVF--AFASLRHLRTLQLYFNDLEEL 256
            +IS+        L+ L+  +  LS        L  L+ L L  N  E L
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL 316

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 78.1 bits (193), Expect = 6e-16
 Identities = 51/251 (20%), Positives = 80/251 (31%), Gaps = 36/251 (14%)

Query: 35  ETTRMSLMQNAIQNLTEIP--TCPRLRTLFLPSNHLGTVSNNFFHSMA--SLRVLILSYN 90
           ++      QN +     +   T   L            +S   F  +   S+  + L  +
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264

Query: 91  RSLENLPLGIF-NLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVIS 149
               N+    F     LQ LD++ T ++ LP  L  L  LK L L    +   + Q   S
Sbjct: 265 Y-FFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISAS 322

Query: 150 DLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNL-------LTITLQSFG 202
           +   L  L +      +EL    +         E L  L+ L+L                
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCL---------ENLENLRELDLSHDDIETSDCCNLQLR 373

Query: 203 ALQRL----LSYCRLGSIS----TQCLCLRHLN-NSNSLSVF----AFASLRHLRTLQLY 249
            L  L    LSY    S+      +C  L  L+     L V      F +L  L+ L L 
Sbjct: 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433

Query: 250 FNDLEELKIDA 260
            + L+      
Sbjct: 434 HSLLDISSEQL 444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.7 bits (192), Expect = 9e-16
 Identities = 37/234 (15%), Positives = 69/234 (29%), Gaps = 38/234 (16%)

Query: 36  TTRMSLMQNAIQNL--TEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSL 93
           T  +    N +  +  T       L  L L    +  +  + F S   L  L+L+ N  L
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP-L 93

Query: 94  ENLPLGIF-NLVSLQHLDISWTGITTL-PIELKYLVNLKCLNLEYTFRLSRIPQQVISDL 151
             +         +L+HL    TGI+++  I L     L+ L L     +S I        
Sbjct: 94  IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPT 152

Query: 152 KMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYC 211
           + L+ L                      +  E++  L+    L++           L+  
Sbjct: 153 EKLKVLDFQNNAI-------------HYLSKEDMSSLQQATNLSL----------NLNGN 189

Query: 212 RLGSISTQCLCLRHL---------NNSNSLSVFAFASLRHLRTLQLYFNDLEEL 256
            +  I                   N          ++++ L        D E++
Sbjct: 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 61/233 (26%), Positives = 98/233 (42%), Gaps = 26/233 (11%)

Query: 38  RMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTV--SNNFFHSMASLRVLILSYNRSLEN 95
           R+ L    ++NL        LR L L  + + T    N    +++ L+ L LSYN    +
Sbjct: 338 RLELGTGCLENL------ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLS 390

Query: 96  LPLGIF-NLVSLQHLDISWTGITTLPIE--LKYLVNLKCLNLEYTFRLSRIPQQVISDLK 152
           L    F     L+ LD+++T +     +   + L  LK LNL ++  L    +Q+   L 
Sbjct: 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLP 449

Query: 153 MLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL----L 208
            L+ L +    F       +        L  E+LVL   +L +I   +F +L+ +    L
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRL--EILVLSFCDLSSIDQHAFTSLKMMNHVDL 507

Query: 209 SYCRLGSIST---QCLCLRHLN-NSNSLSVF---AFASLRHLRTLQLYFNDLE 254
           S+ RL S S      L   +LN  SN +S+        L   RT+ L  N L+
Sbjct: 508 SHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 48/238 (20%), Positives = 83/238 (34%), Gaps = 34/238 (14%)

Query: 37  TRMSLMQNAIQNLTE--IPTCPRLRTLFLPSNHLGTV-SNNFFHSMASLRVLILSYNRSL 93
             ++L  N   +L       CP+L  L L    L    + + F ++  L+VL LS++  L
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-L 437

Query: 94  ENLPLGIF-NLVSLQHLDISWTGITTLPIE----LKYLVNLKCLNLEYTFRLSRIPQQVI 148
           +     +F  L +LQHL++         I+    L+ L  L+ L L +   LS I Q   
Sbjct: 438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAF 496

Query: 149 SDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL- 207
           + LKM+  + +     N    +        + +    L L   ++  I       L +  
Sbjct: 497 TSLKMMNHVDL---SHNRLTSSSIEALSHLKGIY---LNLASNHISIILPSLLPILSQQR 550

Query: 208 ---LSYCRLGSISTQCLC---------LRHLNNSNSLSVFAFASLRHLRTLQLYFNDL 253
              L    L      C C           ++            +   LR ++L    L
Sbjct: 551 TINLRQNPL-----DCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 32/202 (15%), Positives = 65/202 (32%), Gaps = 24/202 (11%)

Query: 83  RVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLS 141
           +         L  +P  + N  S + L+ S+  + T+       L+NL  L+L    ++ 
Sbjct: 15  KTYNCENLG-LNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIY 70

Query: 142 RIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSF 201
            I +        L  L +                   + L    L      + +I     
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLI---FMAETALSGPKALKH--LFFIQTGISSIDFIPL 125

Query: 202 GALQRL----LSYCRLGSIS----TQCLCLRHLN-NSNSLSVF---AFASLRHLR--TLQ 247
              + L    L    + SI          L+ L+  +N++        +SL+     +L 
Sbjct: 126 HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185

Query: 248 LYFNDLEELKIDAGELKRIREI 269
           L  ND+  ++  A +    + +
Sbjct: 186 LNGNDIAGIEPGAFDSAVFQSL 207

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 76.8 bits (189), Expect = 8e-16
 Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 8/141 (5%)

Query: 23  GLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTC---PRLRTLFLPSNHLGTVSNNFFHSM 79
            L   P   +   T  + L  N +  L    T      L +L L  NHL  +S+  F  +
Sbjct: 29  QLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV 87

Query: 80  ASLRVLILSYNRSLENLPLGIF-NLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYT 137
            +LR L LS N  L  L   +F +L +L+ L +    I  +     + +  L+ L L   
Sbjct: 88  PNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146

Query: 138 FRLSRIPQQVISDLKMLRALR 158
            ++SR P ++I D   L  L 
Sbjct: 147 -QISRFPVELIKDGNKLPKLM 166

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 65.6 bits (160), Expect = 5e-12
 Identities = 34/131 (25%), Positives = 53/131 (40%), Gaps = 15/131 (11%)

Query: 37  TRMSLMQNAIQNLTEIPT-----CPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR 91
             + L  N +     I +      P LR L L SNHL T+    F  + +L VL+L  N 
Sbjct: 67  HSLLLSHNHLNF---ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH 123

Query: 92  SLENLPLGIF-NLVSLQHLDISWTGITTLPIE----LKYLVNLKCLNLEYTFRLSRIPQQ 146
            +  +    F ++  LQ L +S   I+  P+E       L  L  L+L    +L ++P  
Sbjct: 124 -IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLT 181

Query: 147 VISDLKMLRAL 157
            +  L      
Sbjct: 182 DLQKLPAWVKN 192

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 38/181 (20%), Positives = 69/181 (38%), Gaps = 27/181 (14%)

Query: 90  NRSLENLPLGIFNLVSLQHLDISWTGITTLPIE--LKYLVNLKCLNLEYTFRLSRIPQQV 147
            + L N+P  +        LD+S   ++ L  E     L NL  L L +   L+ I  + 
Sbjct: 27  KQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEA 83

Query: 148 ISDLKMLRALRMFECGFNVELEA-DSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQR 206
              +  LR L +        L   D  LF D + L  E+L+L + +++ +   +F  + +
Sbjct: 84  FVPVPNLRYLDLSSN----HLHTLDEFLFSDLQAL--EVLLLYNNHIVVVDRNAFEDMAQ 137

Query: 207 L----LSYCRLGSISTQCLC-------LRHLNNSN----SLSVFAFASLRHLRTLQLYFN 251
           L    LS  ++     + +        L  L+ S+     L +     L       LY +
Sbjct: 138 LQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197

Query: 252 D 252
           +
Sbjct: 198 N 198

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 75.9 bits (187), Expect = 3e-15
 Identities = 48/210 (22%), Positives = 77/210 (36%), Gaps = 49/210 (23%)

Query: 48  NLTEIPTC-----PRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF- 101
            LT IP        +L+ L+L +N + ++ +  F+ + SLR L L   + L  +  G F 
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182

Query: 102 NLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFE 161
            L +L++L+++   +  +P  L  L+ L  L+L     LS I       L  L+ L    
Sbjct: 183 GLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLW--- 237

Query: 162 CGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCL 221
                                     +    +  I   +F  LQ L             +
Sbjct: 238 --------------------------MIQSQIQVIERNAFDNLQSL-----------VEI 260

Query: 222 CLRHLNNSNSLSVFAFASLRHLRTLQLYFN 251
            L H NN   L    F  L HL  + L+ N
Sbjct: 261 NLAH-NNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.0 bits (143), Expect = 8e-10
 Identities = 21/100 (21%), Positives = 47/100 (47%), Gaps = 3/100 (3%)

Query: 37  TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL 96
             ++L    ++ +  +    +L  L L  NHL  +    F  +  L+ L +  ++ ++ +
Sbjct: 188 RYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVI 246

Query: 97  PLGIF-NLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNL 134
               F NL SL  ++++   +T LP +    L +L+ ++L
Sbjct: 247 ERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 74.7 bits (184), Expect = 5e-15
 Identities = 46/225 (20%), Positives = 77/225 (34%), Gaps = 22/225 (9%)

Query: 37  TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL 96
           T +    ++I ++T I     L  L   SN++ T+         +L  L    N+ L NL
Sbjct: 45  TSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNK-LTNL 100

Query: 97  PLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRA 156
            +    L  L +L+     +T L +       L  LN      L+ I      D+     
Sbjct: 101 DVT--PLTKLTYLNCDTNKLTKLDVSQ--NPLLTYLNCARN-TLTEI------DVSHNTQ 149

Query: 157 LRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL-LSYCRLGS 215
           L   +C  N ++    +       L    L      +  + +     L RL      +  
Sbjct: 150 LTELDCHLNKKI--TKLDVTPQTQLTT--LDCSFNKITELDVSQNKLLNRLNCDTNNITK 205

Query: 216 IS-TQCLCLRHLN-NSNSLSVFAFASLRHLRTLQLYFNDLEELKI 258
           +   Q + L  L+ +SN L+      L  L       N L EL +
Sbjct: 206 LDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDV 250

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 68.6 bits (168), Expect = 7e-13
 Identities = 34/224 (15%), Positives = 68/224 (30%), Gaps = 24/224 (10%)

Query: 37  TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL 96
           T +    N      ++    +L TL    N +  +          L  L    N  +  L
Sbjct: 151 TELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNN-ITKL 206

Query: 97  PLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRA 156
            L     + L  LD S   +T + +    L  L   +      L+ +    +S L  L  
Sbjct: 207 DLN--QNIQLTFLDCSSNKLTEIDVTP--LTQLTYFDCSVN-PLTELD---VSTLSKLTT 258

Query: 157 LRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLT-ITLQSFGALQRL-LSYCRLG 214
           L   +           I    +  L+      +    +  + +     L  L      + 
Sbjct: 259 LHCIQTDLL------EIDLTHNTQLIY--FQAEGCRKIKELDVTHNTQLYLLDCQAAGIT 310

Query: 215 SIS-TQCLCLRHLN-NSNSLSVFAFASLRHLRTLQLYFNDLEEL 256
            +  +Q   L +L  N+  L+    +    L++L      +++ 
Sbjct: 311 ELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQDF 354

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 40/217 (18%), Positives = 62/217 (28%), Gaps = 25/217 (11%)

Query: 48  NLTEIP--TCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVS 105
            LT++     P L  L    N L  +          L  L    N+ +  L +       
Sbjct: 117 KLTKLDVSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKLDVT--PQTQ 171

Query: 106 LQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFN 165
           L  LD S+  IT L +       L  LN +    ++++      DL     L   +C  N
Sbjct: 172 LTTLDCSFNKITELDVS--QNKLLNRLNCDTN-NITKL------DLNQNIQLTFLDCSSN 222

Query: 166 VELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL-LSYCRLGSIS-TQCLCL 223
            +L    I       L           L  + + +   L  L      L  I  T    L
Sbjct: 223 -KLT--EIDVTPLTQLTY--FDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQL 277

Query: 224 RHL--NNSNSLSVFAFASLRHLRTLQLYFNDLEELKI 258
            +        +          L  L      + EL +
Sbjct: 278 IYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDL 314

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 28/181 (15%), Positives = 52/181 (28%), Gaps = 17/181 (9%)

Query: 82  LRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLS 141
               + +         +    L +L  LD   + IT +   ++ L  L  L       ++
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN-NIT 77

Query: 142 RIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSF 201
            +    +S    L  L              ++       L    L      L  + +   
Sbjct: 78  TLD---LSQNTNLTYLACDSNKLT------NLDVTPLTKL--TYLNCDTNKLTKLDVSQN 126

Query: 202 GALQRL-LSYCRLGSIS-TQCLCLRHL--NNSNSLSVFAFASLRHLRTLQLYFNDLEELK 257
             L  L  +   L  I  +    L  L  + +  ++         L TL   FN + EL 
Sbjct: 127 PLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD 186

Query: 258 I 258
           +
Sbjct: 187 V 187

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 74.1 bits (183), Expect = 5e-15
 Identities = 40/255 (15%), Positives = 93/255 (36%), Gaps = 36/255 (14%)

Query: 17  LVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFF 76
           LV+AG  +     I        ++L  N I +++ +    +L  L++ +N +  +S    
Sbjct: 49  LVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--L 106

Query: 77  HSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEY 136
            ++ +LR L L+ +  + ++   + NL  +  L++      +    L  +  L  L +  
Sbjct: 107 QNLTNLRELYLNEDN-ISDIS-PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTE 164

Query: 137 TFRLSRIPQQVISDLKMLRALRMFECGFN--VELEADSILFGDSEVLVEELLVLKHLNL- 193
           + ++  +       +  L  L      +N   ++             +  L  L +    
Sbjct: 165 S-KVKDVT-----PIANLTDLYSLSLNYNQIEDISP-----------LASLTSLHYFTAY 207

Query: 194 ---LTITLQSFGALQRL----LSYCRLGSIS--TQCLCLRHLN-NSNSLSVF-AFASLRH 242
              +T  +     + RL    +   ++  +S       L  L   +N +S   A   L  
Sbjct: 208 VNQIT-DITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTK 266

Query: 243 LRTLQLYFNDLEELK 257
           L+ L +  N + ++ 
Sbjct: 267 LKMLNVGSNQISDIS 281

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 67.6 bits (166), Expect = 8e-13
 Identities = 39/230 (16%), Positives = 83/230 (36%), Gaps = 32/230 (13%)

Query: 40  SLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLG 99
           + +   I  +             L    +  V       + S+  L+++  + + ++  G
Sbjct: 6   ATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEK-VASIQ-G 61

Query: 100 IFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRM 159
           I  L +L++L+++   IT +   L  LV L  L +    +++ I    + +L  LR L +
Sbjct: 62  IEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTN-KITDIS--ALQNLTNLRELYL 117

Query: 160 FECGFNVELEADSILFGDSEVLVEELLVLKHLNL----LTITLQSFGALQRL----LSYC 211
            E   + ++             +  L  +  LNL        L     +  L    ++  
Sbjct: 118 NEDNIS-DISP-----------LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES 165

Query: 212 RLGSIS--TQCLCLRHLN-NSNSLSVF-AFASLRHLRTLQLYFNDLEELK 257
           ++  ++       L  L+ N N +      ASL  L     Y N + ++ 
Sbjct: 166 KVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT 215

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.3 bits (155), Expect = 2e-11
 Identities = 42/254 (16%), Positives = 103/254 (40%), Gaps = 36/254 (14%)

Query: 17  LVLAGVGLTEAPSIGMWKETTRMSLMQNA-IQNLTEIPTCPRLRTLFLPSNHLGTVSNNF 75
           L L    +++   +    +   ++L  N  + +L+ +     L  L +  + +  V+   
Sbjct: 115 LYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-- 172

Query: 76  FHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLE 135
             ++  L  L L+YN+ +E++   + +L SL +       IT +   +  +  L  L + 
Sbjct: 173 IANLTDLYSLSLNYNQ-IEDIS-PLASLTSLHYFTAYVNQITDIT-PVANMTRLNSLKIG 229

Query: 136 YTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNL-- 193
              +++ +    +++L  L  L +     + ++ A           V++L  LK LN+  
Sbjct: 230 NN-KITDLS--PLANLSQLTWLEIGTNQIS-DINA-----------VKDLTKLKMLNVGS 274

Query: 194 --LTITLQSFGALQRL----LSYCRLGSISTQCLC----LRHLN-NSNSLS-VFAFASLR 241
             ++  +     L +L    L+  +LG+   + +     L  L  + N ++ +   ASL 
Sbjct: 275 NQIS-DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLS 333

Query: 242 HLRTLQLYFNDLEE 255
            + +       +++
Sbjct: 334 KMDSADFANQVIKK 347

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.8 bits (184), Expect = 6e-15
 Identities = 50/210 (23%), Positives = 78/210 (37%), Gaps = 49/210 (23%)

Query: 48  NLTEIPT-----CPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF- 101
            LT IP+       +LR L+L +N + ++ +  F+ + SL  L L   + LE +  G F 
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193

Query: 102 NLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFE 161
            L +L++L++    I  +P  L  LV L+ L +        I       L  L+ L    
Sbjct: 194 GLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLW--- 248

Query: 162 CGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCL 221
                                     + +  +  I   +F  L  L             L
Sbjct: 249 --------------------------VMNSQVSLIERNAFDGLASL-----------VEL 271

Query: 222 CLRHLNNSNSLSVFAFASLRHLRTLQLYFN 251
            L H NN +SL    F  LR+L  L L+ N
Sbjct: 272 NLAH-NNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.8 bits (145), Expect = 4e-10
 Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 3/100 (3%)

Query: 37  TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL 96
             ++L    I+++  +     L  L +  NH   +    FH ++SL+ L +  ++ +  +
Sbjct: 199 KYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLI 257

Query: 97  PLGIF-NLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNL 134
               F  L SL  L+++   +++LP +    L  L  L+L
Sbjct: 258 ERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 75.1 bits (185), Expect = 6e-15
 Identities = 55/250 (22%), Positives = 94/250 (37%), Gaps = 21/250 (8%)

Query: 36  TTRMSLMQNAIQNL--TEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSL 93
           T  + L  N +++L      + P L+ L L    + T+ +  + S++ L  LIL+ N  +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-I 88

Query: 94  ENLPLGIF-NLVSLQHLDISWTGITTL-PIELKYLVNLKCLNLEYTFRLSRIPQQVISDL 151
           ++L LG F  L SLQ L    T + +L    + +L  LK LN+ +    S    +  S+L
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 152 KMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGA--LQRL-L 208
             L  L +        +    +       L+   L L    +  I   +F    L +L L
Sbjct: 149 TNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207

Query: 209 SYCR------------LGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEEL 256
                           L  +    L L    N  +L  F  ++L  L  L +    L  L
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 257 KIDAGELKRI 266
                ++  +
Sbjct: 268 DYYLDDIIDL 277

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 75.1 bits (185), Expect = 6e-15
 Identities = 38/209 (18%), Positives = 84/209 (40%), Gaps = 17/209 (8%)

Query: 55  CPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR-SLENLPLGIFNLVSLQHLDISW 113
              L+ L     +L ++ N     + +L+ L +++N      LP    NL +L+HLD+S 
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 114 TGITTL-PIELKYLVNLKCLNLE---YTFRLSRIPQQVISDLKMLRALRMFECGFNVELE 169
             I ++   +L+ L  +  LNL        ++ I      +++ L  L +     ++ + 
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVM 217

Query: 170 ADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYC--RLGSISTQCLCLRHLN 227
              I         + L  L+   L+    ++ G L++        L +++ +   L +L+
Sbjct: 218 KTCI---------QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268

Query: 228 NSNSLSVFAFASLRHLRTLQLYFNDLEEL 256
                 +  F  L ++ +  L    +E +
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 71.6 bits (176), Expect = 7e-14
 Identities = 46/229 (20%), Positives = 74/229 (32%), Gaps = 30/229 (13%)

Query: 48  NLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR--SLENLPLGIFNLVS 105
              + PT        L        +      + SL  L LS N            F   S
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 106 LQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFN 165
           L++LD+S+ G+ T+      L  L+ L+ +++         V   L+ L  L +      
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 166 VELEADSILFGDSEVLVEELLVLKHLNL------LTITLQSFGALQRL----LSYCRLGS 215
           V    + I  G        L  L+ L +             F  L+ L    LS C+L  
Sbjct: 435 VAF--NGIFNG--------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484

Query: 216 ISTQCLC----LRHLN-NSNSLSVF---AFASLRHLRTLQLYFNDLEEL 256
           +S         L+ LN + N+        +  L  L+ L    N +   
Sbjct: 485 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 39/231 (16%), Positives = 68/231 (29%), Gaps = 21/231 (9%)

Query: 50  TEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRV----LILSYNRSLENLPLGIFNLVS 105
                   L  L L SN + ++       +  + +    L LS N  +  +  G F  + 
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIR 201

Query: 106 LQHLDISWTGITT--LPIELKYLVNLKCLNLEY-----TFRLSRIPQQVISDLKMLRALR 158
           L  L +     +   +   ++ L  L+   L          L +  +  +  L  L    
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 159 MFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTIT-LQSFGALQRL-LSYCRLGSI 216
                 +  L+    LF     +      L  + +  +         Q L L  C+ G  
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSS--FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 319

Query: 217 STQCLC----LRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGEL 263
            T  L     L   +N    + F+   L  L  L L  N L      +   
Sbjct: 320 PTLKLKSLKRLTFTSNKGG-NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 40  SLMQNAIQNLTE--IPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP 97
            L Q  ++ L+     +   L+ L +  N+  ++    +  + SL+VL  S N  +    
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSK 534

Query: 98  LGIF--NLVSLQHLDIS 112
                    SL  L+++
Sbjct: 535 KQELQHFPSSLAFLNLT 551

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.4 bits (183), Expect = 9e-15
 Identities = 55/255 (21%), Positives = 96/255 (37%), Gaps = 22/255 (8%)

Query: 23  GLTEAPSIGMWKETTRMSLMQNAIQNLTE--IPTCPRLRTLFLPSNHLGTVSNNFFHSMA 80
              + P   +   T  + L  N +++L      + P L+ L L    + T+ +  + S++
Sbjct: 18  NFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76

Query: 81  SLRVLILSYNRSLENLPLGIF-NLVSLQHLDISWTGITTLP-IELKYLVNLKCLNLEYTF 138
            L  LIL+ N  +++L LG F  L SLQ L    T + +L    + +L  LK LN+ +  
Sbjct: 77  HLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN- 134

Query: 139 RLSRIPQ-QVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEEL------------ 185
            +      +  S+L  L  L +           D  +     +L   L            
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 186 LVLKHLNLLTITLQSFGALQRLLSYC--RLGSISTQCLCLRHLNNSNSLSVFAFASLRHL 243
              K + L  +TL++      ++  C   L  +    L L    N  +L  F  ++L  L
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 244 RTLQLYFNDLEELKI 258
             L +    L  L  
Sbjct: 255 CNLTIEEFRLAYLDY 269

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 52/256 (20%), Positives = 84/256 (32%), Gaps = 35/256 (13%)

Query: 19  LAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHS 78
           L  V +              + L+         +     L+ L   SN  G   +     
Sbjct: 289 LVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK-LKSLKRLTFTSNKGGNAFS--EVD 345

Query: 79  MASLRVLILSYNR--SLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEY 136
           + SL  L LS N            F   SL++LD+S+ G+ T+      L  L+ L+ ++
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 405

Query: 137 TFRLSRIPQQ-VISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNL-- 193
           +  L ++ +  V   L+ L  L +                         L  L+ L +  
Sbjct: 406 S-NLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIF---------NGLSSLEVLKMAG 454

Query: 194 --LTITLQS--FGALQRL----LSYCRLGSISTQCLC----LRHLN-NSNSLSVF---AF 237
                      F  L+ L    LS C+L  +S         L+ LN  SN L       F
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514

Query: 238 ASLRHLRTLQLYFNDL 253
             L  L+ + L+ N  
Sbjct: 515 DRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 70.1 bits (172), Expect = 2e-13
 Identities = 37/222 (16%), Positives = 88/222 (39%), Gaps = 24/222 (10%)

Query: 48  NLTEIPT-----CPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF- 101
            +  +          L+ L     +L ++ N     + +L+ L +++N  +++  L  + 
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYF 145

Query: 102 -NLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTF---RLSRIPQQVISDLKMLRA 156
            NL +L+HLD+S   I ++    L+ L  +  LNL        ++ I      +++ L  
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHK 204

Query: 157 LRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYC--RLG 214
           L +     ++ +    I         + L  L+   L+    ++ G L++        L 
Sbjct: 205 LTLRNNFDSLNVMKTCI---------QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255

Query: 215 SISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEEL 256
           +++ +   L +L+      +  F  L ++ +  L    +E +
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 37/248 (14%), Positives = 76/248 (30%), Gaps = 22/248 (8%)

Query: 37  TRMSLMQNAIQNL---TEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRV----LILSY 89
             +++  N IQ+            L  L L SN + ++       +  + +    L LS 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 90  NRSLENLPLGIFNLVSLQHLDISWTGITT--LPIELKYLVNLKCLNLEYTF-----RLSR 142
           N  +  +  G F  + L  L +     +   +   ++ L  L+   L          L +
Sbjct: 187 NP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 143 IPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSF- 201
             +  +  L  L          +  L+    LF     +      L  + +  +   S+ 
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV--SSFSLVSVTIERVKDFSYN 303

Query: 202 GALQRL----LSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELK 257
              Q L      + +  ++  + L      ++   + F+   L  L  L L  N L    
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 258 IDAGELKR 265
             +     
Sbjct: 364 CCSQSDFG 371

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 41/237 (17%), Positives = 83/237 (35%), Gaps = 30/237 (12%)

Query: 48  NLTEIPT-----CPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFN 102
           +L +           ++ L L  N L  +S         L +L LS N  L      + +
Sbjct: 21  SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETL-DLES 78

Query: 103 LVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFEC 162
           L +L+ LD++   +  L +      +++ L+      +SR+     S  +  + + +   
Sbjct: 79  LSTLRTLDLNNNYVQELLV----GPSIETLHAANN-NISRVS---CSRGQGKKNIYL--- 127

Query: 163 GFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSF-GALQRL----LSYCRLGSIS 217
             N       +  G    +    L LK   + T+       +   L    L Y  +  + 
Sbjct: 128 ANNKITMLRDLDEGCRSRVQY--LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185

Query: 218 TQCLC--LRHLN-NSNSLSVF--AFASLRHLRTLQLYFNDLEELKIDAGELKRIREI 269
            Q +   L+ L+ +SN L+     F S   +  + L  N L  ++      + +   
Sbjct: 186 GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHF 242

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 36/227 (15%), Positives = 74/227 (32%), Gaps = 30/227 (13%)

Query: 56  PRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF-NLVSLQHLDISWT 114
            R +   +  + L     +   S  +++ L LS N  L  +          L+ L++S  
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN 68

Query: 115 GITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSIL 174
            +     +L+ L  L+ L+L   +         + +L +  ++       N      +I 
Sbjct: 69  VLYETL-DLESLSTLRTLDLNNNY---------VQELLVGPSIETLHAANN------NIS 112

Query: 175 FGDSEVLVE-ELLVLKHLNLLTITLQSFGALQRL----LSYCRLGSISTQCL-----CLR 224
                     + + L +  +  +     G   R+    L    + +++   L      L 
Sbjct: 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 225 HLN-NSNSLSVF-AFASLRHLRTLQLYFNDLEELKIDAGELKRIREI 269
           HLN   N +           L+TL L  N L  +  +      +  I
Sbjct: 173 HLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWI 219

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.9 bits (151), Expect = 6e-11
 Identities = 32/224 (14%), Positives = 73/224 (32%), Gaps = 48/224 (21%)

Query: 41  LMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGI 100
           L  N +    ++ +   LRTL L +N++  +         S+  L  + N  +  +    
Sbjct: 65  LSSNVLYETLDLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNN-ISRVSCSR 118

Query: 101 FNLVSLQHLDISWTGITTLP-IELKYLVNLKCLNLEYTFRLSRIP-QQVISDLKMLRALR 158
                 +++ ++   IT L  ++      ++ L+L+    +  +   ++ +    L    
Sbjct: 119 GQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTL---- 171

Query: 159 MFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSF-GALQRL-LSYCRLGSI 216
                                    E L L++  +  +  Q     L+ L LS  +L  +
Sbjct: 172 -------------------------EHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM 206

Query: 217 STQCLCLRHLN----NSNSLSVF--AFASLRHLRTLQLYFNDLE 254
             +      +      +N L +   A    ++L    L  N   
Sbjct: 207 GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 25/160 (15%), Positives = 48/160 (30%), Gaps = 15/160 (9%)

Query: 46  IQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVS 105
           +       +   L  L L  N +  V        A L+ L LS N+ L  +     +   
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNK-LAFMGPEFQSAAG 215

Query: 106 LQHLDISWTGITTLPIELKYLVNLKCLNLEY-----------TFRLSRIPQQVISDLKML 154
           +  + +    +  +   L++  NL+  +L               +  R+       +K L
Sbjct: 216 VTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275

Query: 155 RALRMFECGFNVELEADSILFGDS-EVLVEELLVLKHLNL 193
                 EC         +    D      + L+ L H + 
Sbjct: 276 TGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHH 315

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 72.3 bits (178), Expect = 2e-14
 Identities = 41/250 (16%), Positives = 78/250 (31%), Gaps = 50/250 (20%)

Query: 29  SIGMWKETTRMSLMQNAIQNLTEIP------TCPRLRTLFLPSNHLGTVSNNFFHSMASL 82
           S      +    +     + L          T P    L L S  L    +  F  ++ L
Sbjct: 48  SAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFR-LSHL 106

Query: 83  RVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSR 142
           + + +     L  LP  +     L+ L ++   +  LP  +  L  L+ L++     L+ 
Sbjct: 107 QHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTE 165

Query: 143 IPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQ--- 199
           +P                          + +   D+    + L+ L+ L L    ++   
Sbjct: 166 LP--------------------------EPLASTDASGEHQGLVNLQSLRLEWTGIRSLP 199

Query: 200 -SFGALQRL----LSYCRLGSIST---QCLCLRHLN--NSNSLSVF--AFASLRHLRTLQ 247
            S   LQ L    +    L ++         L  L+     +L  +   F     L+ L 
Sbjct: 200 ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259

Query: 248 LY-FNDLEEL 256
           L   ++L  L
Sbjct: 260 LKDCSNLLTL 269

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.5 bits (163), Expect = 2e-12
 Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 4/138 (2%)

Query: 24  LTEAPSIGMWKETTRMSLMQNAIQNL-TEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASL 82
              +           + L    I++L   I     L++L + ++ L  +     H +  L
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAI-HHLPKL 231

Query: 83  RVLILSYNRSLENLPLGIFNLVSLQHLDISW-TGITTLPIELKYLVNLKCLNLEYTFRLS 141
             L L    +L N P        L+ L +   + + TLP+++  L  L+ L+L     LS
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 142 RIPQQVISDLKMLRALRM 159
           R+P   I+ L     + +
Sbjct: 292 RLPSL-IAQLPANCIILV 308

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 31/134 (23%), Positives = 49/134 (36%), Gaps = 5/134 (3%)

Query: 17  LVLAGVGLTEAP-SIGMWKETTRMSLMQNAIQNL-TEIPTCPRLRTLFLPS-NHLGTVSN 73
           L L   G+   P SI   +    + +  + +  L   I   P+L  L L     L     
Sbjct: 188 LRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP 247

Query: 74  NFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISW-TGITTLPIELKYLVNLKCL 132
            F    A L+ LIL    +L  LPL I  L  L+ LD+     ++ LP  +  L     +
Sbjct: 248 IFGG-RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306

Query: 133 NLEYTFRLSRIPQQ 146
            +    +      +
Sbjct: 307 LVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 36/259 (13%), Positives = 74/259 (28%), Gaps = 65/259 (25%)

Query: 70  TVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISW---------------- 113
             S++  H  +    L    + +L      +       + D +                 
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE 61

Query: 114 ----TGITTLPIELKYL--VNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVE 167
                 +      L+         L L     L + P Q    L  L+ + +        
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSV-PLPQFPDQ-AFRLSHLQHMTIDAA----G 115

Query: 168 LEA--DSILFGDSEVLVEELLVLKHLNL----LTITLQSFGALQRL----LSYC------ 211
           L    D++         ++   L+ L L    L     S  +L RL    +  C      
Sbjct: 116 LMELPDTM---------QQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTEL 166

Query: 212 -------RLGSISTQCLCLRHLN-NSNSLSVF--AFASLRHLRTLQLYFNDLEELKIDAG 261
                           + L+ L      +     + A+L++L++L++  + L  L     
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIH 226

Query: 262 ELKRIRE--ICGFHSLQKV 278
            L ++ E  + G  +L+  
Sbjct: 227 HLPKLEELDLRGCTALRNY 245

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.8 bits (179), Expect = 4e-14
 Identities = 35/260 (13%), Positives = 78/260 (30%), Gaps = 52/260 (20%)

Query: 23  GLTEAPSIGMWKETTRMSLMQNAIQNLTEIP----TCPRLRTLFLPSNHLGTVSNNFFHS 78
                 S+   K+   +  + N    L        +  +L +L L  N +  +  NF   
Sbjct: 319 TFPVETSLQKMKKLGMLECLYN---QLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGF 375

Query: 79  MASLRVLILSYNRSLENLP--LGIFNLVSLQHLDIS--------WTGITTLPIELKYLVN 128
              +  L  ++N+ L+ +P      ++  +  +D S              L       +N
Sbjct: 376 TEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434

Query: 129 LKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVL 188
           +  +NL    ++S+ P+++ S    L ++ +             I     +   E     
Sbjct: 435 VSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLT------EIPKNSLKDENENFKNT 487

Query: 189 KHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQL 248
             L  +             L + +L  +S                 F   +L +L  + L
Sbjct: 488 YLLTSID------------LRFNKLTKLSDD---------------FRATTLPYLVGIDL 520

Query: 249 YFNDLEELKIDAGELKRIRE 268
            +N   +          ++ 
Sbjct: 521 SYNSFSKFPTQPLNSSTLKG 540

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.5 bits (168), Expect = 9e-13
 Identities = 28/237 (11%), Positives = 67/237 (28%), Gaps = 44/237 (18%)

Query: 40  SLMQNAIQNL-TEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR------- 91
           S+       L         + ++ L +N +       F + + L  + L  N        
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475

Query: 92  SLENLPLGIFNLVSLQHLDISWTGITTLPIELKY--LVNLKCLNLEYTFRLSRIPQQVIS 149
           SL++      N   L  +D+ +  +T L  + +   L  L  ++L Y    S+ P Q   
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQ-PL 533

Query: 150 DLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL-- 207
           +   L+   +                             +    L    +       L  
Sbjct: 534 NSSTLKGFGI-----------------------RNQRDAQGNRTLREWPEGITLCPSLTQ 570

Query: 208 --LSYCRLGSISTQCL-CLRHLN-NSNSLSVF---AFASLRHLRTLQLYFNDLEELK 257
             +    +  ++ +    +  L+   N                    L+++  ++++
Sbjct: 571 LQIGSNDIRKVNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIR 627

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 24/255 (9%), Positives = 67/255 (26%), Gaps = 43/255 (16%)

Query: 46  IQNLTEIPTCPRLRTLFLPSNHL--GTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNL 103
           +     I              H     V  +     + L    ++ +   +++       
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

Query: 104 VSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECG 163
           +    +      IT +   +  L  L+   +  +            + +           
Sbjct: 183 LKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSE-------- 233

Query: 164 FNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL----LSYCRLGSIST- 218
           +  + + + + + + + L +  + + +   LT       AL  +    ++  R  S    
Sbjct: 234 YAQQYKTEDLKWDNLKDLTD--VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQL 291

Query: 219 -----------QCLCLRHLN-NSNSLSVF----AFASLRHLRTLQLYFNDLEELKIDAGE 262
                          ++ +    N+L  F    +   ++ L  L+  +N LE        
Sbjct: 292 KDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK------ 345

Query: 263 LKRIREICGFHSLQK 277
              +        L  
Sbjct: 346 ---LPAFGSEIKLAS 357

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 31/290 (10%), Positives = 82/290 (28%), Gaps = 61/290 (21%)

Query: 13  KENFLVLAGVGLTEAP-SIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTV 71
           K+  +      +T    ++    +  +  +  +          C                
Sbjct: 184 KDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNS---PFVAENICEAWENENSEYAQQYKT 240

Query: 72  SNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPI---------E 122
            +  + ++  L  + +    +L  LP  +  L  +Q ++++     +            +
Sbjct: 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALAD 300

Query: 123 LKYLVNLKCLNLEYTFRLSRIP-QQVISDLKMLRALRMFECGFNVELEADSILFGDSEVL 181
                 ++ + + Y   L   P +  +  +K L  L                        
Sbjct: 301 APVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLY-------------------- 339

Query: 182 VEELLVLKHLNLLTITLQSFGALQRL----LSYCRLGSISTQCLC----LRHLN-NSNSL 232
                     N L   L +FG+  +L    L+Y ++  I          + +L+   N L
Sbjct: 340 ----------NQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL 389

Query: 233 S----VFAFASLRHLRTLQLYFNDLEELKIDAGELKRI-REICGFHSLQK 277
                +F   S+  +  +   +N++    +D      +        ++  
Sbjct: 390 KYIPNIFDAKSVSVMSAIDFSYNEIGS--VDGKNFDPLDPTPFKGINVSS 437

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 27/148 (18%), Positives = 47/148 (31%), Gaps = 18/148 (12%)

Query: 20  AGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIP------TCPRLRTLFLPSNHLGTVSN 73
                 E  +       T + L  N    LT++       T P L  + L  N       
Sbjct: 474 KNSLKDENENFKNTYLLTSIDLRFN---KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT 530

Query: 74  NFFHSMASLRVL------ILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLV 127
               + ++L+            NR+L   P GI    SL  L I    I  +  ++    
Sbjct: 531 QPL-NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TP 587

Query: 128 NLKCLNLEYTFRLSRIPQQVISDLKMLR 155
           N+  L+++    +S     V   ++   
Sbjct: 588 NISVLDIKDNPNISIDLSYVCPYIEAGM 615

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 19/238 (7%), Positives = 58/238 (24%), Gaps = 41/238 (17%)

Query: 76  FHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDIS-----WTGITTLPIELKYLVNLK 130
            +S   +  L L    +   +P  I  L  L+ L +             P  +   ++ +
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 131 CLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKH 190
                         +  +          + +   N + +  SI       L +  +    
Sbjct: 137 QKQK----MRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLS 192

Query: 191 LNLLTITLQSFGALQRL----LSYCRL-GSISTQCLCLRHLNNSNSLSVF---------- 235
            N+  ++ ++   L +L    +           +     +   +                
Sbjct: 193 NNITFVS-KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDL 251

Query: 236 ----------------AFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQK 277
                              +L  ++ + +  N     +    + + + +      +Q 
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 70.4 bits (173), Expect = 6e-14
 Identities = 58/240 (24%), Positives = 95/240 (39%), Gaps = 34/240 (14%)

Query: 23  GLTEAPSIGMWKETTRMSLMQNAIQNLTE--IPTCPRLRTLFLPSNHLGTVSNNFFHSMA 80
              + P   +   T  + L  N +++L      + P L+ L L    + T+ +  + S++
Sbjct: 18  NFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76

Query: 81  SLRVLILSYNRSLENLPLGIF-NLVSLQHLDISWTGITTLPIEL-KYLVNLKCLNLEYTF 138
            L  LIL+ N  +++L LG F  L SLQ L    T + +L      +L  LK LN+ +  
Sbjct: 77  HLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 139 RLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITL 198
             S    +  S+L  L  L +            SI   D       L VL  + LL ++L
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQ------SIYCTD-------LRVLHQMPLLNLSL 182

Query: 199 QSFGALQRLLSYCRLGSIST---QCLCLRHL----NNSNSLSVFAFASLRHLRTLQLYFN 251
                    LS   +  I     + + L+ L    N   S+    F  L  L+ + L+ N
Sbjct: 183 D--------LSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 66.9 bits (164), Expect = 9e-13
 Identities = 50/237 (21%), Positives = 81/237 (34%), Gaps = 57/237 (24%)

Query: 47  QNLTEIPTC--PRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF-NL 103
            N  +IP       + L L  N L  + +  F S   L+VL LS    ++ +  G + +L
Sbjct: 17  LNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSL 75

Query: 104 VSLQHLDISWTGITTLPIEL-KYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFEC 162
             L  L ++   I +L +     L +L+ L    T  L+ +    I  LK L+ L +   
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNV--- 131

Query: 163 GFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGA------LQRL-LSYCRLGS 215
                                        NL+  + +          L+ L LS  ++ S
Sbjct: 132 ---------------------------AHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 216 IST---------QCLCLR---HLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDA 260
           I             L L     LN  N +   AF  +  L+ L L  N L+ +    
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGI 219

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 30/172 (17%), Positives = 50/172 (29%), Gaps = 45/172 (26%)

Query: 89  YNRSLENLPLGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQV 147
              +   +P  +    S ++LD+S+  +  L          L+ L+L     +  I    
Sbjct: 15  MELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGA 71

Query: 148 ISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL 207
              L  L  L +                                N +  +L   GA   L
Sbjct: 72  YQSLSHLSTLILTG------------------------------NPIQ-SLAL-GAFSGL 99

Query: 208 LSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKID 259
                    S Q L      N  SL  F    L+ L+ L +  N ++  K+ 
Sbjct: 100 --------SSLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 70.6 bits (173), Expect = 1e-13
 Identities = 43/237 (18%), Positives = 83/237 (35%), Gaps = 30/237 (12%)

Query: 48  NLTEIP-----TCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFN 102
           +L +       +   ++ L L  N L  +S         L +L LS N  L      + +
Sbjct: 21  SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETL-DLES 78

Query: 103 LVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFEC 162
           L +L+ LD++   +  L +      +++ L+      +SR+        K +        
Sbjct: 79  LSTLRTLDLNNNYVQELLV----GPSIETLHAANN-NISRVSCSRGQGKKNIY------L 127

Query: 163 GFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGA----LQRL-LSYCRLGSIS 217
             N       +  G    +    L LK   + T+      A    L+ L L Y  +  + 
Sbjct: 128 ANNKITMLRDLDEGCRSRVQY--LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185

Query: 218 TQCLC--LRHLN-NSNSLSVF--AFASLRHLRTLQLYFNDLEELKIDAGELKRIREI 269
            Q +   L+ L+ +SN L+     F S   +  + L  N L  ++      + +   
Sbjct: 186 GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHF 242

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 67.2 bits (164), Expect = 2e-12
 Identities = 36/235 (15%), Positives = 69/235 (29%), Gaps = 21/235 (8%)

Query: 37  TRMSLMQNAIQNLTE---IPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSL 93
             + L  N I  +       +   L  L L  N +  V        A L+ L LS N+ L
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNK-L 203

Query: 94  ENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEY-----------TFRLSR 142
             +     +   +  + +    +  +   L++  NL+  +L               +  R
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 143 IPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEV-LVEELLVLKHLNLLTITLQSF 201
           +       +K L      EC         +    D      + L+ LK      ++ Q  
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ-- 321

Query: 202 GALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEEL 256
           G+    L   R      + +         ++        +   TL+     L+E 
Sbjct: 322 GSETERLECERENQARQREIDALK-EQYRTVIDQVTLRKQAKITLEQKKKALDEQ 375

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 65.3 bits (159), Expect = 8e-12
 Identities = 36/227 (15%), Positives = 74/227 (32%), Gaps = 30/227 (13%)

Query: 56  PRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF-NLVSLQHLDISWT 114
            R +   +  + L     +   S  +++ L LS N  L  +          L+ L++S  
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN 68

Query: 115 GITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSIL 174
            +     +L+ L  L+ L+L   +         + +L +  ++       N      +I 
Sbjct: 69  VLYETL-DLESLSTLRTLDLNNNY---------VQELLVGPSIETLHAANN------NIS 112

Query: 175 FGDSEVLVE-ELLVLKHLNLLTITLQSFGALQRL----LSYCRLGSISTQCLC-----LR 224
                     + + L +  +  +     G   R+    L    + +++   L      L 
Sbjct: 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 225 HLN-NSNSLSVF-AFASLRHLRTLQLYFNDLEELKIDAGELKRIREI 269
           HLN   N +           L+TL L  N L  +  +      +  I
Sbjct: 173 HLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWI 219

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 53/251 (21%), Positives = 97/251 (38%), Gaps = 32/251 (12%)

Query: 17  LVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFF 76
            VL    +T+  S     + T +   +  I+++  +     L  +   +N L  ++    
Sbjct: 29  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--L 86

Query: 77  HSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEY 136
            ++  L  ++++ N+ + ++   + NL +L  L +    IT +   LK L NL  L L  
Sbjct: 87  KNLTKLVDILMNNNQ-IADIT-PLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSS 143

Query: 137 TFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNL--- 193
              +S I       L  L +L+    G  V          D + L   L  L+ L++   
Sbjct: 144 N-TISDIS-----ALSGLTSLQQLSFGNQVT---------DLKPL-ANLTTLERLDISSN 187

Query: 194 -LTI--TLQSFGALQRL-LSYCRLGSIS--TQCLCLRHLN-NSNSLSVF-AFASLRHLRT 245
            ++    L     L+ L  +  ++  I+       L  L+ N N L      ASL +L  
Sbjct: 188 KVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTD 247

Query: 246 LQLYFNDLEEL 256
           L L  N +  L
Sbjct: 248 LDLANNQISNL 258

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.5 bits (163), Expect = 3e-12
 Identities = 50/288 (17%), Positives = 102/288 (35%), Gaps = 50/288 (17%)

Query: 17  LVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFF 76
           L L    +T+   +       R+ L  N I +++ +     L+ L    N +  +     
Sbjct: 117 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF-GNQVTDLKP--L 173

Query: 77  HSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEY 136
            ++ +L  L +S N+ + ++   +  L +L+ L  +   I+ +   L  L NL  L+L  
Sbjct: 174 ANLTTLERLDISSNK-VSDIS-VLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNG 230

Query: 137 TFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTI 196
             +L  I    ++ L  L  L +     +                +  L  L  L  L +
Sbjct: 231 N-QLKDIG--TLASLTNLTDLDLANNQISN---------------LAPLSGLTKLTELKL 272

Query: 197 ------TLQSFGALQRL----LSYCRLGSIS--TQCLCLRHLN-NSNSLS-VFAFASLRH 242
                  +     L  L    L+  +L  IS  +    L +L    N++S +   +SL  
Sbjct: 273 GANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTK 332

Query: 243 LRTLQLYFN------------DLEELKIDAGELKRIREICGFHSLQKV 278
           L+ L  Y N            ++  L     ++  +  +     + ++
Sbjct: 333 LQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 380

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.3 bits (152), Expect = 8e-11
 Identities = 34/217 (15%), Positives = 74/217 (34%), Gaps = 38/217 (17%)

Query: 44  NAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNL 103
             I  +             L   ++    +     +  +  L       ++++  G+  L
Sbjct: 12  TPINQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLG-IKSID-GVEYL 67

Query: 104 VSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECG 163
            +L  ++ S   +T +   LK L  L  + +    +++ I    +++L  L  L +F   
Sbjct: 68  NNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNNQ 123

Query: 164 FNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSIS--TQCL 221
                             ++ L  L +LN L             LS   +  IS  +   
Sbjct: 124 ITD---------------IDPLKNLTNLNRLE------------LSSNTISDISALSGLT 156

Query: 222 CLRHLNNSNSLS-VFAFASLRHLRTLQLYFNDLEELK 257
            L+ L+  N ++ +   A+L  L  L +  N + ++ 
Sbjct: 157 SLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS 193

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 23/135 (17%), Positives = 54/135 (40%), Gaps = 6/135 (4%)

Query: 24  LTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLR 83
           ++    +      T + L +N +++++ I     L  L L  N++  +S     S+  L+
Sbjct: 277 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 334

Query: 84  VLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRI 143
            L    N+ + ++   + NL ++  L      I+ L   L  L  +  L L      +  
Sbjct: 335 RLFFYNNK-VSDVS-SLANLTNINWLSAGHNQISDLT-PLANLTRITQLGLNDQ-AWTNA 390

Query: 144 PQQVISDLKMLRALR 158
           P    +++ +   ++
Sbjct: 391 PVNYKANVSIPNTVK 405

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.1 bits (136), Expect = 7e-09
 Identities = 30/141 (21%), Positives = 58/141 (41%), Gaps = 6/141 (4%)

Query: 17  LVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFF 76
           L L    L +   I   K  T ++L  N I +++ + +  +L+ LF  +N +  VS+   
Sbjct: 292 LELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS--L 349

Query: 77  HSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEY 136
            ++ ++  L   +N+ + +L   + NL  +  L ++    T  P+   Y  N+   N   
Sbjct: 350 ANLTNINWLSAGHNQ-ISDLT-PLANLTRITQLGLNDQAWTNAPVN--YKANVSIPNTVK 405

Query: 137 TFRLSRIPQQVISDLKMLRAL 157
               + I    ISD       
Sbjct: 406 NVTGALIAPATISDGGSYTEP 426

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 15/120 (12%), Positives = 43/120 (35%), Gaps = 3/120 (2%)

Query: 17  LVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFF 76
           L L    +++   +    +  R+    N + +++ +     +  L    N +  ++    
Sbjct: 314 LTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--L 371

Query: 77  HSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEY 136
            ++  +  L L+      N P+     VS+ +   + TG    P  +    +    ++ +
Sbjct: 372 ANLTRITQLGLNDQA-WTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITW 430

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 2/104 (1%)

Query: 17  LVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFF 76
           L      +++  S+        +S   N I +LT +    R+  L L          N+ 
Sbjct: 336 LFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYK 395

Query: 77  HSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLP 120
            ++ S+   + +        P  I +  S    DI+W   +   
Sbjct: 396 ANV-SIPNTVKNVT-GALIAPATISDGGSYTEPDITWNLPSYTN 437

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 47/245 (19%), Positives = 84/245 (34%), Gaps = 35/245 (14%)

Query: 37  TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL 96
             ++   N ++ L E+   P L  ++  +N L            SL  ++   N  LE L
Sbjct: 176 EFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK----LPDLPLSLESIVAGNNI-LEEL 230

Query: 97  PLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRA 156
           P  + NL  L  +      + TLP     L  L   +      L+ +P       + L  
Sbjct: 231 P-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN----YLTDLP----ELPQSLTF 281

Query: 157 LRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNL----LTITLQSFGALQRL-LSYC 211
           L + E  F+               L E    L +LN     +        +L+ L +S  
Sbjct: 282 LDVSENIFS--------------GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN 327

Query: 212 RLGSISTQCLCLRHLN-NSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREIC 270
           +L  +      L  L  + N L+       ++L+ L + +N L E       ++ +R   
Sbjct: 328 KLIELPALPPRLERLIASFNHLAEVP-ELPQNLKQLHVEYNPLREFPDIPESVEDLRMNS 386

Query: 271 GFHSL 275
               +
Sbjct: 387 HLAEV 391

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 43/246 (17%), Positives = 80/246 (32%), Gaps = 41/246 (16%)

Query: 33  WKETTRMSLMQNAIQNLTEIPTCP--RLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYN 90
           W+        +     ++ +  C   +   L L +  L ++     H    L  L+ S N
Sbjct: 46  WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPH----LESLVASCN 101

Query: 91  RSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISD 150
             L  LP    +L SL   + +   ++ LP        L+ L +    +L ++P     +
Sbjct: 102 S-LTELPELPQSLKSLLVDNNNLKALSDLP------PLLEYLGVSNN-QLEKLP-----E 148

Query: 151 LKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNL----LTITLQSFGALQR 206
           L+    L++ +   N             + L +    L+ +      L   L     L  
Sbjct: 149 LQNSSFLKIIDVDNN-----------SLKKLPDLPPSLEFIAAGNNQLE-ELPELQNLPF 196

Query: 207 L----LSYCRLGSISTQCLCLRHLN-NSNSLSVF-AFASLRHLRTLQLYFNDLEELKIDA 260
           L         L  +    L L  +   +N L       +L  L T+    N L+ L    
Sbjct: 197 LTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLP 256

Query: 261 GELKRI 266
             L+ +
Sbjct: 257 PSLEAL 262

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 45/239 (18%), Positives = 84/239 (35%), Gaps = 44/239 (18%)

Query: 37  TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL 96
             +    N ++ L E+   P L T++  +N L T+ +       SL  L +  N  L +L
Sbjct: 218 ESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNY-LTDL 272

Query: 97  PLGIFNLVSLQHLDISWTGITTLPIELKYL--------------VNLKCLNLEYTFRLSR 142
           P    +L  L   +  ++G++ LP  L YL               +L+ LN+    +L  
Sbjct: 273 PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIE 331

Query: 143 IPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSF- 201
           +P    +    L  L                       + E    LK L++    L+ F 
Sbjct: 332 LP----ALPPRLERLIASFNHL--------------AEVPELPQNLKQLHVEYNPLREFP 373

Query: 202 ---GALQRLLSYCRLGSISTQCLCLRHLN-NSNSLSVFAFASLRHLRTLQLYFNDLEEL 256
               +++ L     L  +      L+ L+  +N L  F       +  L++    + + 
Sbjct: 374 DIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF-PDIPESVEDLRMNSERVVDP 431

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 22/124 (17%), Positives = 39/124 (31%), Gaps = 23/124 (18%)

Query: 48  NLTEIP-TCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLV-- 104
            L E+P   PRL  L    NHL  V         +L+ L + YN  L   P    ++   
Sbjct: 328 KLIELPALPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNP-LREFPDIPESVEDL 382

Query: 105 --------------SLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISD 150
                         +L+ L +    +   P   + + +L+  +            +    
Sbjct: 383 RMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNSERVV-DPYEFAHETTDK 441

Query: 151 LKML 154
           L+  
Sbjct: 442 LEDD 445

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 29/170 (17%), Positives = 64/170 (37%), Gaps = 13/170 (7%)

Query: 96  LPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLR 155
           +     +   LQ      + +T +P+E + + +       ++      P     + + + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMA 61

Query: 156 ALRMFECGFN--VELEADSILFGDSEVLVEELLVLKHLNL----LTITLQSFGALQRL-L 208
             R+ +C      ELE +++       L E    L+ L      LT   +   +L+ L +
Sbjct: 62  VSRLRDCLDRQAHELELNNLGL---SSLPELPPHLESLVASCNSLTELPELPQSLKSLLV 118

Query: 209 SYCRLGSISTQCLCLRHLN-NSNSLSVF-AFASLRHLRTLQLYFNDLEEL 256
               L ++S     L +L  ++N L       +   L+ + +  N L++L
Sbjct: 119 DNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKL 168

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 35/215 (16%), Positives = 58/215 (26%), Gaps = 29/215 (13%)

Query: 78  SMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITT-LPIELKYLVNLKCLNLEY 136
           S   L+  +   + +L  +P+   N+ S      +W+      P        +    L  
Sbjct: 9   SNTFLQEPLRHSS-NLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 137 TF------------RLSRIPQQVISDLKMLRALRMF------ECGFNVELEADSILFGDS 178
                          LS +P+     L+ L A                 L  D+      
Sbjct: 68  CLDRQAHELELNNLGLSSLPEL-PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKAL 126

Query: 179 EVLVEELLVLK-HLNLLTITLQSFGALQRL----LSYCRLGSISTQCLCLRHLN-NSNSL 232
             L   L  L    N L   L        L    +    L  +      L  +   +N L
Sbjct: 127 SDLPPLLEYLGVSNNQLE-KLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 185

Query: 233 SVF-AFASLRHLRTLQLYFNDLEELKIDAGELKRI 266
                  +L  L  +    N L++L      L+ I
Sbjct: 186 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESI 220

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 69.4 bits (170), Expect = 3e-13
 Identities = 42/292 (14%), Positives = 84/292 (28%), Gaps = 34/292 (11%)

Query: 47  QNLTEIPTCPR-LRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF-NLV 104
           + L ++P  P  +  + L  N +  ++   F  +  L+ L +        +    F  L 
Sbjct: 20  RGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 105 SLQHLDISWTGITTLPIE-LKYLVNLKCLNLEY-TFRLSRIPQQVISDLKMLRALRMFEC 162
           SL  L + +     L       L NL+ L L       + +       L  L  L + + 
Sbjct: 80  SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 163 GFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSF--GALQRL--LSYCRLGSIST 218
               +++  S            +     L+L    ++S     L       +  L   S 
Sbjct: 140 NIK-KIQPASFFLN--------MRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI 190

Query: 219 QCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKV 278
               + +                 + TL L  N  +E                F      
Sbjct: 191 TLQDM-NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK-----------RFFDA--- 235

Query: 279 FYKILKIEARDMACTCSQYQACPRG-LTKFEEHPLKRLECAELKELPLDCNH 329
                KI++  ++ + +   +         +    K LE + +K   L  + 
Sbjct: 236 -IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 22/126 (17%), Positives = 46/126 (36%), Gaps = 8/126 (6%)

Query: 40  SLMQNAIQNLTEIP----TCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLEN 95
           S      ++             ++T  L  + +  +  + F     L  L L+ N  +  
Sbjct: 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INK 313

Query: 96  LPLGIF-NLVSLQHLDISWTGITTLPIEL-KYLVNLKCLNLEYTFRLSRIPQQVISDLKM 153
           +    F  L  L  L++S   + ++   + + L  L+ L+L Y   +  +  Q    L  
Sbjct: 314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPN 372

Query: 154 LRALRM 159
           L+ L +
Sbjct: 373 LKELAL 378

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 38/239 (15%), Positives = 71/239 (29%), Gaps = 35/239 (14%)

Query: 56  PRLRTLFLPSNHLGTVSNN-FFHSMASLRVLILSYNR----------SLENLPLGIFNLV 104
             L  L L  N++  +    FF +M    VL L++N+          + +     +  L 
Sbjct: 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188

Query: 105 SLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALR----- 158
           S+   D++   +            ++  L+L           +   D      ++     
Sbjct: 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDL-SGNGFKESMAKRFFDAIAGTKIQSLILS 247

Query: 159 -----MFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL----LS 209
                    G     + D+  F   E    +   L    +  +    F     L    L+
Sbjct: 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA 307

Query: 210 YCRLGSISTQCLC----LRHLN-NSN---SLSVFAFASLRHLRTLQLYFNDLEELKIDA 260
              +  I          L  LN + N   S+    F +L  L  L L +N +  L   +
Sbjct: 308 QNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS 366

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 39/239 (16%), Positives = 73/239 (30%), Gaps = 54/239 (22%)

Query: 17  LVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFF 76
           L L+G G  E+ +   +       +    + N   + +            +     N  F
Sbjct: 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS-------FGHTNFKDPDNFTF 269

Query: 77  H--SMASLRVLILSYNRSLENLPLGIF-NLVSLQHLDISWTGITTLPIE-LKYLVNLKCL 132
                + ++   LS ++ +  L   +F +   L+ L ++   I  +       L +L  L
Sbjct: 270 KGLEASGVKTCDLSKSK-IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328

Query: 133 NLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLN 192
           NL     L  I  ++  +L  L  L +                                +
Sbjct: 329 NLSQN-FLGSIDSRMFENLDKLEVLDLSYN-----------------------------H 358

Query: 193 LLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFN 251
           +  +  QSF  L  L           + L L   N   S+    F  L  L+ + L+ N
Sbjct: 359 IRALGDQSFLGLPNL-----------KELALDT-NQLKSVPDGIFDRLTSLQKIWLHTN 405

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 66.6 bits (163), Expect = 6e-13
 Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 8/143 (5%)

Query: 23  GLTEAPSIGMWKETTRMSLMQNAIQNLTEIPT---CPRLRTLFLPSNHLGTVSNNFFHSM 79
            L + P   + + T  + L  N    L         P+LR +   +N +  +    F   
Sbjct: 22  KLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA 80

Query: 80  ASLRVLILSYNRSLENLPLGIF-NLVSLQHLDISWTGITTLPIEL-KYLVNLKCLNLEYT 137
           + +  ++L+ NR LEN+   +F  L SL+ L +    IT +  +    L +++ L+L Y 
Sbjct: 81  SGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL-YD 138

Query: 138 FRLSRIPQQVISDLKMLRALRMF 160
            +++ +       L  L  L + 
Sbjct: 139 NQITTVAPGAFDTLHSLSTLNLL 161

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 68.8 bits (168), Expect = 7e-13
 Identities = 52/247 (21%), Positives = 85/247 (34%), Gaps = 30/247 (12%)

Query: 33  WKETTRMSLMQNAIQNLTEIPTC--PRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYN 90
           W+        +     + ++  C       L +  + L T+ +      A +  L++  N
Sbjct: 15  WRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLP---AHITTLVIPDN 71

Query: 91  RSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISD 150
             L +LP     L   + L++S   +T+LP+    L+ L   +   T  L  +P      
Sbjct: 72  N-LTSLPALPPEL---RTLEVSGNQLTSLPVLPPGLLELSIFSNPLT-HLPALPSG---- 122

Query: 151 LKMLRALRMFECGFNV------ELEADSILFGDSEVLVEELLVLKHLNLLTITLQS---- 200
              L  L +F             L+  S+       L      L  L      L S    
Sbjct: 123 ---LCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPML 179

Query: 201 FGALQRL-LSYCRLGSISTQCLCLRHLN-NSNSLSVFAFASLRHLRTLQLYFNDLEELKI 258
              LQ L +S  +L S+ T    L  L   +N L+    A    L+ L +  N L  L +
Sbjct: 180 PSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLP-ALPSGLKELIVSGNRLTSLPV 238

Query: 259 DAGELKR 265
              ELK 
Sbjct: 239 LPSELKE 245

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 62.6 bits (152), Expect = 8e-11
 Identities = 48/228 (21%), Positives = 81/228 (35%), Gaps = 40/228 (17%)

Query: 37  TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL 96
             +S+  N + +L  +P+   L  L++  N L ++          L+ L +S N+ L +L
Sbjct: 104 LELSIFSNPLTHLPALPS--GLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQ-LASL 156

Query: 97  PLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRA 156
           P     L     L      +T+LP+       L+ L++    +L+ +P    +    L  
Sbjct: 157 PALPSEL---CKLWAYNNQLTSLPMLPS---GLQELSVSDN-QLASLP----TLPSELYK 205

Query: 157 LRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSF----GALQRL-LSYC 211
           L  +                    L      LK L +    L S       L+ L +S  
Sbjct: 206 LWAYNNRLTS--------------LPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGN 251

Query: 212 RLGSISTQCLCLRHLN-NSNSLSVF--AFASLRHLRTLQLYFNDLEEL 256
           RL S+      L  L+   N L+    +   L    T+ L  N L E 
Sbjct: 252 RLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 299

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.4 bits (128), Expect = 6e-08
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 11/118 (9%)

Query: 37  TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL 96
            ++    N + +L  +P+   L+ L +  N L ++        + L+ L++S NR L +L
Sbjct: 204 YKLWAYNNRLTSLPALPS--GLKELIVSGNRLTSLPV----LPSELKELMVSGNR-LTSL 256

Query: 97  PLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKML 154
           P+    L     L +    +T LP  L +L +   +NLE    LS    Q + ++   
Sbjct: 257 PMLPSGL---LSLSVYRNQLTRLPESLIHLSSETTVNLEGN-PLSERTLQALREITSA 310

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 67.7 bits (166), Expect = 8e-13
 Identities = 41/234 (17%), Positives = 74/234 (31%), Gaps = 52/234 (22%)

Query: 48  NLTEIPTC--PRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR-SLENLPLGIFNLV 104
           +L EIP      L  L +  N +  V    F  + ++  + +  N         G F+ +
Sbjct: 113 HLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172

Query: 105 SLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGF 164
            L +L IS   +T +P +L     L  L+L++  ++  I  + +     L  L       
Sbjct: 173 KLNYLRISEAKLTGIPKDL--PETLNELHLDHN-KIQAIELEDLLRYSKLYRLG------ 223

Query: 165 NVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL----LSYCRLGSISTQC 220
                                  L H  +  I   S   L  L    L   +L  +    
Sbjct: 224 -----------------------LGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGL 260

Query: 221 LCLRHL-------NNSNSLSVFAFASLR------HLRTLQLYFNDLEELKIDAG 261
             L+ L       NN   + V  F  +       +   + L+ N +   ++   
Sbjct: 261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA 314

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 67.3 bits (165), Expect = 9e-13
 Identities = 49/283 (17%), Positives = 96/283 (33%), Gaps = 72/283 (25%)

Query: 15  NFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTE--IPTCPRLRTLFLPSNHLGTVS 72
             +  + +GL   P   +  +TT + L  N I  L +        L  L L +N +  + 
Sbjct: 36  RVVQCSDLGLKAVPK-EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH 94

Query: 73  NNFFHSM---------------------ASLRVLILSYNRSLENLPLGIF-NLVSLQHLD 110
              F  +                     +SL  L +  NR +  +P G+F  L ++  ++
Sbjct: 95  EKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNR-IRKVPKGVFSGLRNMNCIE 153

Query: 111 ISWTGITTLPIELKYL--VNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVEL 168
           +    +     E      + L  L +    +L+ IP+ +   L  L              
Sbjct: 154 MGGNPLENSGFEPGAFDGLKLNYLRISEA-KLTGIPKDLPETLNELH------------- 199

Query: 169 EADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL----LSYCRLGSISTQCLC-- 222
                              L H  +  I L+      +L    L + ++  I    L   
Sbjct: 200 -------------------LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240

Query: 223 --LRHLN-NSNSLSVF--AFASLRHLRTLQLYFNDLEELKIDA 260
             LR L+ ++N LS        L+ L+ + L+ N++ ++ ++ 
Sbjct: 241 PTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVND 283

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 28/154 (18%), Positives = 55/154 (35%), Gaps = 12/154 (7%)

Query: 16  FLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTE--IPTCPRLRTLFLPSNHLGTVSN 73
           +L ++   LT  P   + +    + L  N IQ +    +    +L  L L  N +  + N
Sbjct: 176 YLRISEAKLTGIPK-DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN 234

Query: 74  NFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIE-------LKYL 126
                + +LR L L  N+ L  +P G+ +L  LQ + +    IT + +            
Sbjct: 235 GSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKR 293

Query: 127 VNLKCLNLEY-TFRLSRIPQQVISDLKMLRALRM 159
                ++L         +       +    A++ 
Sbjct: 294 AYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 35/224 (15%), Positives = 69/224 (30%), Gaps = 52/224 (23%)

Query: 37  TRMSLMQNAIQNLTEIP---TCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSL 93
             + +  N ++N    P      +L  L +    L  +  +      +L  L L +N+ +
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP---ETLNELHLDHNK-I 205

Query: 94  ENLPLGIF-NLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDL 151
           + + L        L  L +    I  +    L +L  L+ L+L+   +LSR+P   + DL
Sbjct: 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPA-GLPDL 263

Query: 152 KMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYC 211
           K+L+ +                              L   N+  + +  F  +   +   
Sbjct: 264 KLLQVVY-----------------------------LHTNNITKVGVNDFCPVGFGVKRA 294

Query: 212 RLGSISTQCLCLRHLNN----SNSLSVFAFASLRHLRTLQLYFN 251
               I         L N       +    F  +     +Q    
Sbjct: 295 YYNGI--------SLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 64.6 bits (158), Expect = 5e-12
 Identities = 59/234 (25%), Positives = 93/234 (39%), Gaps = 50/234 (21%)

Query: 23  GLTEAPSIGMWKETTRMSLMQNAIQNLTE--IPTCPRLRTLFLPSNHLGTVSNNFFHSMA 80
            LT  PS  +  +T ++ L  N + +L         +LR L+L  N L T+    F  + 
Sbjct: 27  KLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK 85

Query: 81  SLRVLILSYNRSLENLPLGIF-NLVSLQHLDISWTGITTLPIEL-KYLVNLKCLNLEYTF 138
           +L  L ++ N+ L+ LP+G+F  LV+L  L +    + +LP  +   L  L  L+L Y  
Sbjct: 86  NLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN- 143

Query: 139 RLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLT-IT 197
            L  +P+ V   L  L+ LR+                              + N L  + 
Sbjct: 144 ELQSLPKGVFDKLTSLKELRL------------------------------YNNQLKRVP 173

Query: 198 LQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFN 251
             +F  L  L           + L L + N    +   AF SL  L+ LQL  N
Sbjct: 174 EGAFDKLTEL-----------KTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 51/216 (23%), Positives = 75/216 (34%), Gaps = 75/216 (34%)

Query: 47  QNLTEIPTC--PRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLV 104
           + LT IP+      + L L SN L ++ +  FH +  LR+L L+ N+ L+ LP GIF   
Sbjct: 26  KKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFK-- 82

Query: 105 SLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGF 164
                                L NL+ L +    +L  +P  V   L  L  LR+     
Sbjct: 83  --------------------ELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRL----- 116

Query: 165 NVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLR 224
                                      N L  +L        L          T+   L 
Sbjct: 117 -------------------------DRNQLK-SLPP-RVFDSL----------TK---LT 136

Query: 225 HLN-NSN---SLSVFAFASLRHLRTLQLYFNDLEEL 256
           +L+   N   SL    F  L  L+ L+LY N L+ +
Sbjct: 137 YLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 63.1 bits (154), Expect = 8e-12
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 13/146 (8%)

Query: 23  GLTEAPSIGMWKETTRMSLMQNAIQNLTEIPT-----CPRLRTLFLPSNHLGTVSNNFFH 77
           GLTE P+  + +  T + L QN I     IP        +LR + L +N +  ++ + F 
Sbjct: 22  GLTEIPT-NLPETITEIRLEQNTI---KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ 77

Query: 78  SMASLRVLILSYNRSLENLPLGIF-NLVSLQHLDISWTGITTLPIEL-KYLVNLKCLNLE 135
            + SL  L+L  N+ +  LP  +F  L SLQ L ++   I  L ++  + L NL  L+L 
Sbjct: 78  GLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSL- 135

Query: 136 YTFRLSRIPQQVISDLKMLRALRMFE 161
           Y  +L  I +   S L+ ++ + + +
Sbjct: 136 YDNKLQTIAKGTFSPLRAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 39/207 (18%), Positives = 66/207 (31%), Gaps = 67/207 (32%)

Query: 47  QNLTEIPTC--PRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLV 104
           + LTEIPT     +  + L  N +  +    F     LR + LS N  +  L    F   
Sbjct: 21  KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQ-- 77

Query: 105 SLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGF 164
                                L +L  L L Y  +++ +P+ +   L  L+         
Sbjct: 78  --------------------GLRSLNSLVL-YGNKITELPKSLFEGLFSLQ--------- 107

Query: 165 NVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLR 224
                               LL+L    +  + + +F  L  L             L L 
Sbjct: 108 --------------------LLLLNANKINCLRVDAFQDLHNL-----------NLLSLY 136

Query: 225 HLNNSNSLSVFAFASLRHLRTLQLYFN 251
             N   +++   F+ LR ++T+ L  N
Sbjct: 137 D-NKLQTIAKGTFSPLRAIQTMHLAQN 162

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.0 bits (155), Expect = 3e-11
 Identities = 51/263 (19%), Positives = 87/263 (33%), Gaps = 43/263 (16%)

Query: 17  LVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFF 76
             L    +T+A +        ++    + I+++  I   P +  LFL  N L  +     
Sbjct: 26  DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--L 83

Query: 77  HSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEY 136
            ++ +L  L L  N+ +++L   + +L  L+ L +   GI+ +   L +L  L+ L L  
Sbjct: 84  TNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN 140

Query: 137 TFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTI 196
                +I    I+ L  L  L       N                           +  I
Sbjct: 141 N----KI--TDITVLSRLTKLDTLSLEDN--------------------------QISDI 168

Query: 197 T-LQSFGALQRL-LSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLE 254
             L     LQ L LS   +  +      L  L N + L +F+   L      Q       
Sbjct: 169 VPLAGLTKLQNLYLSKNHISDLR----ALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 224

Query: 255 ELKIDAGELKRIREICGFHSLQK 277
            +K   G L     I      +K
Sbjct: 225 TVKNTDGSLVTPEIISDDGDYEK 247

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.8 bits (113), Expect = 4e-06
 Identities = 28/224 (12%), Positives = 65/224 (29%), Gaps = 49/224 (21%)

Query: 82  LRVLILSYNR--SLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFR 139
           +   I        +                ++    +T   +    L ++  +    +  
Sbjct: 1   MGETITVSTPIKQIFPDD----AFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNS-D 54

Query: 140 LSRIPQQVISDLKMLRALRMFECGFN--VELEADSILFGDSEVLVEELLVLKHLNL---- 193
           +       +  ++ L  +       N   +++            +  L  L  L L    
Sbjct: 55  IKS-----VQGIQYLPNVTKLFLNGNKLTDIKP-----------LTNLKNLGWLFLDENK 98

Query: 194 -LTIT-LQSFGALQRL-LSYCRLGSIS--TQCLCLRHLN-NSNSLSVF-AFASLRHLRTL 246
              ++ L+    L+ L L +  +  I+       L  L   +N ++     + L  L TL
Sbjct: 99  IKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTL 158

Query: 247 QLYFN------------DLEELKIDAGELKRIREICGFHSLQKV 278
            L  N             L+ L +    +  +R + G  +L  +
Sbjct: 159 SLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVL 202

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.4 bits (152), Expect = 3e-11
 Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 5/125 (4%)

Query: 37  TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL 96
           T+++L +  +  L    T P L TL L  N L ++      ++ +L VL +S+NR L +L
Sbjct: 58  TQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNR-LTSL 115

Query: 97  PLGIF-NLVSLQHLDISWTGITTLPIEL-KYLVNLKCLNLEYTFRLSRIPQQVISDLKML 154
           PLG    L  LQ L +    + TLP  L      L+ L+L     L+ +P  +++ L+ L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENL 174

Query: 155 RALRM 159
             L +
Sbjct: 175 DTLLL 179

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 37/132 (28%), Positives = 52/132 (39%), Gaps = 5/132 (3%)

Query: 16  FLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNL-TEIPTCPRLRTLFLPSNHLGTVSNN 74
            L L    LT+    G       + L  N +Q+L     T P L  L +  N L ++   
Sbjct: 59  QLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 75  FFHSMASLRVLILSYNRSLENLPLGIF-NLVSLQHLDISWTGITTLPIEL-KYLVNLKCL 132
               +  L+ L L  N  L+ LP G+      L+ L ++   +T LP  L   L NL  L
Sbjct: 119 ALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 133 NLEYTFRLSRIP 144
            L     L  IP
Sbjct: 178 LL-QENSLYTIP 188

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 58.6 bits (142), Expect = 6e-10
 Identities = 48/227 (21%), Positives = 70/227 (30%), Gaps = 50/227 (22%)

Query: 47  QNLTEIPTC--PRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLV 104
           +NLT +P         L L  N L T S         L  L L     L  L +    L 
Sbjct: 20  RNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLP 77

Query: 105 SLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGF 164
            L  LD+S   + +LP+  + L  L  L++ +  RL+ +P   +  L  L+ L +     
Sbjct: 78  VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYL----- 131

Query: 165 NVELEADSILFGDSEVLVEELLVLKHLNLLTITLQS--FGALQRLLSYCRLGSISTQCLC 222
                                      N L  TL         +L           + L 
Sbjct: 132 -------------------------KGNELK-TLPPGLLTPTPKL-----------EKLS 154

Query: 223 LRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREI 269
           L + NN   L       L +L TL L  N L  +         +   
Sbjct: 155 LAN-NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFA 200

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 36/211 (17%), Positives = 56/211 (26%), Gaps = 80/211 (37%)

Query: 53  PTCP-----RLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF-NLVSL 106
           P C          +     +L  +  +         +L LS N  L    L        L
Sbjct: 2   PICEVSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENL-LYTFSLATLMPYTRL 57

Query: 107 QHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV 166
             L++    +T L ++   L  L  L+L +                              
Sbjct: 58  TQLNLDRAELTKLQVDGT-LPVLGTLDLSH------------------------------ 86

Query: 167 ELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL-LSYCRLGSISTQCLCLRH 225
                                   L  L +  Q+  AL  L +S+ RL            
Sbjct: 87  ----------------------NQLQSLPLLGQTLPALTVLDVSFNRL------------ 112

Query: 226 LNNSNSLSVFAFASLRHLRTLQLYFNDLEEL 256
                SL + A   L  L+ L L  N+L+ L
Sbjct: 113 ----TSLPLGALRGLGELQELYLKGNELKTL 139

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.3 bits (154), Expect = 4e-11
 Identities = 57/344 (16%), Positives = 110/344 (31%), Gaps = 44/344 (12%)

Query: 14  ENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNL--TEIPTCPRLRTLFLPSNHLGTV 71
           E  +  +  GL   P   + ++TT +++ QN I  L  ++I +  +LR L +  N +  +
Sbjct: 2   EFLVDRSKNGLIHVPK-DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL 60

Query: 72  SNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPI--ELKYLVNL 129
             + F     L  L LS+N+ L  +       V+L+HLD+S+     LPI  E   +  L
Sbjct: 61  DISVFKFNQELEYLDLSHNK-LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQL 117

Query: 130 KCLNLEYTFRLSRIPQQVISDLKM-------------------LRALRMFECGFNVELEA 170
           K L L  T  L +     I+ L +                   L+               
Sbjct: 118 KFLGLSTT-HLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176

Query: 171 DSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSN 230
           +     D  V     L L ++  +    +    L  L        +S   L       ++
Sbjct: 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236

Query: 231 SLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDM 290
            + +        +    +    L+      G+L          SL+ +    +       
Sbjct: 237 FIRILQLVWHTTVWYFSISNVKLQ------GQLDFRDFDYSGTSLKALSIHQVVS----- 285

Query: 291 ACTCSQYQACPRGL-TKFEEHPLKRLECAELKELPLDCNHGLEQ 333
                 +      +   F    +K    +  + + + C   +  
Sbjct: 286 ----DVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISP 325

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.8 bits (137), Expect = 5e-09
 Identities = 33/205 (16%), Positives = 59/205 (28%), Gaps = 39/205 (19%)

Query: 58  LRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF-NLVSLQHLDISWTGI 116
           +       +    V       ++    L  S N  L +       +L  L+ L +    +
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL-LTDTVFENCGHLTELETLILQMNQL 360

Query: 117 TTLPIE---LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSI 173
             L         + +L+ L++          +   S  K L +L M              
Sbjct: 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT------DT 414

Query: 174 LFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCL---CLRHLN-NS 229
           +F      ++ L                      L   ++ SI  Q +    L+ LN  S
Sbjct: 415 IFRCLPPRIKVLD---------------------LHSNKIKSIPKQVVKLEALQELNVAS 453

Query: 230 NSLSVF---AFASLRHLRTLQLYFN 251
           N L       F  L  L+ + L+ N
Sbjct: 454 NQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 9/119 (7%)

Query: 28  PSIGMWKETTRMSLMQNAIQNLTEIPT-----CPRLRTLFLPSNHLGTVSNNFFHSMASL 82
           P   +++  + M++    +     +             L   +N L          +  L
Sbjct: 291 PQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTEL 350

Query: 83  RVLILSYNR--SLENLPLGIFNLVSLQHLDISWTGITTLPIE--LKYLVNLKCLNLEYT 137
             LIL  N+   L  +      + SLQ LDIS   ++    +    +  +L  LN+   
Sbjct: 351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 33/251 (13%), Positives = 75/251 (29%), Gaps = 35/251 (13%)

Query: 37  TRMSLMQNAIQNLTEIPT---CPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSL 93
             + L  NA   L          +L+ L L + HL   S      +   +VL++      
Sbjct: 93  KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG 152

Query: 94  ENLPLGIFNLVSLQHLDISWTGITT----LPIELKYLVNLKCLNLEYTFRLSRIPQQV-- 147
           E          + + L I +         L + +K + NL+  N++     ++    +  
Sbjct: 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212

Query: 148 -------------------ISDLKMLRALRMFECGFNVELEADSILF---GDSEVLVEEL 185
                               +    +R L++            ++      D        
Sbjct: 213 LAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG 272

Query: 186 LVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRT 245
             LK L++  +    FG  Q  + Y    +++ +      ++ +  + +   + +     
Sbjct: 273 TSLKALSIHQVVSDVFGFPQSYI-YEIFSNMNIKNF---TVSGTRMVHMLCPSKISPFLH 328

Query: 246 LQLYFNDLEEL 256
           L    N L + 
Sbjct: 329 LDFSNNLLTDT 339

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 31/221 (14%), Positives = 71/221 (32%), Gaps = 36/221 (16%)

Query: 58  LRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFN-LVSLQHLDISWTGI 116
           +  + L         +    S+ +L +  +  +         I+    ++   + + +G 
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV-FGFPQSYIYEIFSNMNIKNFTVSGT 312

Query: 117 TTLPIEL-KYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILF 175
             + +     +     L+      L+    +    L  L  L +                
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNN-LLTDTVFENCGHLTELETLILQMNQ------------ 359

Query: 176 GDSEVLVEELLVLKHLNLLTITLQSFGALQRL-LSYCRLGSISTQCLC-----LRHLN-N 228
                       LK L+ +        +LQ+L +S   +     +  C     L  LN +
Sbjct: 360 ------------LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407

Query: 229 SNSLSVFAFASL-RHLRTLQLYFNDLEELKIDAGELKRIRE 268
           SN L+   F  L   ++ L L+ N ++ +     +L+ ++E
Sbjct: 408 SNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQE 448

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 63.0 bits (153), Expect = 5e-11
 Identities = 52/225 (23%), Positives = 87/225 (38%), Gaps = 20/225 (8%)

Query: 36  TTRMSLMQNAIQNL--TEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSL 93
           T  +SL QN+I  L   +I     LR L L  N + ++  + F     L  L +S+NR L
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-L 112

Query: 94  ENLPLGIFNLVSLQHLDISWTGITTLPI--ELKYLVNLKCLNLEYTFRLSRIPQQVISDL 151
           +N+      + SL+HLD+S+     LP+  E   L  L  L L    +  ++    ++ L
Sbjct: 113 QNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGL-SAAKFRQLDLLPVAHL 169

Query: 152 KMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYC 211
            +   L        ++L +  I  G++E L      + HL     +L S      + +  
Sbjct: 170 HLSCIL--------LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALG 221

Query: 212 RLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEEL 256
            L   + +        N   L  F     R    L +    +E  
Sbjct: 222 HLQLSNIKLND----ENCQRLMTFLSELTRGPTLLNVTLQHIETT 262

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 52.6 bits (126), Expect = 9e-08
 Identities = 37/210 (17%), Positives = 66/210 (31%), Gaps = 25/210 (11%)

Query: 58  LRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFN-LVSLQHLDISWTGI 116
           L    + +          +   A + + +LS +     + +       S   L+ +    
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS-DTPFIHMVCPPSPSSFTFLNFTQNVF 365

Query: 117 TTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILF 175
           T    +    L  L+ L L+    L     +V    K + +L   +   N      S+  
Sbjct: 366 TDSVFQGCSTLKRLQTLILQRN-GLKNFF-KVALMTKNMSSLETLDVSLN------SLNS 417

Query: 176 GDSEVLVEELLVLKHLNLLTITLQS------FGALQRL-LSYCRLGSISTQCL---CLRH 225
              +        +  LNL +  L           ++ L L   R+ SI         L+ 
Sbjct: 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQE 477

Query: 226 LN-NSNSLSVF---AFASLRHLRTLQLYFN 251
           LN  SN L       F  L  L+ + L+ N
Sbjct: 478 LNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.0 bits (154), Expect = 6e-11
 Identities = 56/228 (24%), Positives = 89/228 (39%), Gaps = 27/228 (11%)

Query: 48  NLT-EIPT--CPRLRTLFLPSNHL-GTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNL 103
                IP      L+ L L  N   G + +    +  +L  L LS N     +P    + 
Sbjct: 258 QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317

Query: 104 VSLQHLDISWTGIT-TLPIE-LKYLVNLKCLNLEYTFRLS-RIPQQVISDLKMLRALRMF 160
             L+ L +S    +  LP++ L  +  LK L+L +    S  +P+ + +    L  L + 
Sbjct: 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN-EFSGELPESLTNLSASLLTLDLS 376

Query: 161 ECGFNVELEADSILFGDSEVLVEELLVLKHLNLLT----ITLQSFGALQRL-LSYCRL-G 214
              F+  +  +  L  + +  ++EL +    N  T     TL +   L  L LS+  L G
Sbjct: 377 SNNFSGPILPN--LCQNPKNTLQELYL--QNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432

Query: 215 SISTQCLC----LRHLN-NSNSLS---VFAFASLRHLRTLQLYFNDLE 254
           +I    L     LR L    N L          ++ L TL L FNDL 
Sbjct: 433 TIP-SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 62.2 bits (152), Expect = 1e-10
 Identities = 44/219 (20%), Positives = 76/219 (34%), Gaps = 30/219 (13%)

Query: 57  RLRTLFLPSNHL----GTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDIS 112
           ++ ++ L S  L      VS++   S+  L  L LS +    ++  G     SL  LD+S
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLL-SLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLS 108

Query: 113 WTGIT-TLP--IELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELE 169
              ++  +     L     LK LN+                L  L  L +     +    
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

Query: 170 ADSILFGDSEVLVEELLVLKHLNL----LT--ITLQSFGALQRL-LSYCRL-GSIST--Q 219
              +L             LKHL +    ++  + +     L+ L +S       I     
Sbjct: 169 VGWVLSD-------GCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGD 221

Query: 220 CLCLRHLN-NSNSLS---VFAFASLRHLRTLQLYFNDLE 254
           C  L+HL+ + N LS     A ++   L+ L +  N   
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.5 bits (145), Expect = 7e-10
 Identities = 55/268 (20%), Positives = 90/268 (33%), Gaps = 44/268 (16%)

Query: 15  NFLVLAGVGLT-EAPSIGMWKETTRMSLMQN----AIQNLTEIPTCPRLRTLFLPSNHL- 68
             L L+   +             T + L +N     +  LT + +C  L+ L + SN L 
Sbjct: 80  ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD 139

Query: 69  GTVSNNFFHSMASLRVLILSYNRSLENLPLGIF---NLVSLQHLDISWTGITTLPIELKY 125
                +    + SL VL LS N       +G         L+HL IS   I +  +++  
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI-SGDVDVSR 198

Query: 126 LVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEEL 185
            VNL+ L++      + IP   + D   L+ L +     + +                 +
Sbjct: 199 CVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSR-------------AI 243

Query: 186 LVLKHLNLL---------TITLQSFGALQRL-LSYCRL-----GSISTQCLCLRHLN-NS 229
                L LL          I      +LQ L L+  +        +S  C  L  L+ + 
Sbjct: 244 STCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303

Query: 230 NSLSV---FAFASLRHLRTLQLYFNDLE 254
           N         F S   L +L L  N+  
Sbjct: 304 NHFYGAVPPFFGSCSLLESLALSSNNFS 331

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.2 bits (144), Expect = 9e-10
 Identities = 52/250 (20%), Positives = 88/250 (35%), Gaps = 39/250 (15%)

Query: 28  PSIGMWKETTRMSLMQNAIQNLT-EIPTC----PRLRTLFLPSNHL-GTVSNNFFHSMAS 81
           P++    E   + L  N    L+  IP+      +LR L L  N L G +       + +
Sbjct: 412 PTLSNCSELVSLHLSFN---YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM-YVKT 467

Query: 82  LRVLILSYNRSLE-NLPLGIFNLVSLQHLDISWTGIT-TLPIELKYLVNLKCLNLEYTFR 139
           L  LIL +N  L   +P G+ N  +L  + +S   +T  +P  +  L NL  L L     
Sbjct: 468 LETLILDFND-LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN-S 525

Query: 140 LS-RIPQQVISDLKMLRALRMF----------ECGFNVELEADSILFGDSEVLVEELLVL 188
            S  IP + + D + L  L +                    A + + G   V ++   + 
Sbjct: 526 FSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584

Query: 189 KHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNS-NSLS---VFAFASLRHLR 244
           K  +     L+  G         +L  +ST        N +           F +   + 
Sbjct: 585 KECHGAGNLLEFQGIRSE-----QLNRLST----RNPCNITSRVYGGHTSPTFDNNGSMM 635

Query: 245 TLQLYFNDLE 254
            L + +N L 
Sbjct: 636 FLDMSYNMLS 645

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 8/112 (7%)

Query: 51  EIPTCPRLRTLFLPSNHL---GTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQ 107
            I      +      N L   G  S      +++     ++      +      N  S+ 
Sbjct: 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNR-LSTRNPCNITSRVYGGHTSPTFDNNGSMM 635

Query: 108 HLDISWTGIT-TLPIELKYLVNLKCLNLEYTFRLS-RIPQQVISDLKMLRAL 157
            LD+S+  ++  +P E+  +  L  LNL +   +S  IP + + DL+ L  L
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHN-DISGSIPDE-VGDLRGLNIL 685

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 5/122 (4%)

Query: 37  TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL 96
           T ++L    + +LT I     ++ L + + H    +      +++L  L +       + 
Sbjct: 47  TYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDK 104

Query: 97  PLGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLR 155
              +  L SL  LDIS +      +  +  L  +  ++L Y   ++ I    +  L  L+
Sbjct: 105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--MPLKTLPELK 162

Query: 156 AL 157
           +L
Sbjct: 163 SL 164

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 3/118 (2%)

Query: 40  SLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLG 99
           ++      N   I     L  L +    + +        + SL +L +S++   +++   
Sbjct: 72  TINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

Query: 100 IFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRAL 157
           I  L  +  +D+S+ G  T  + LK L  LK LN+++   +     + I D   L  L
Sbjct: 132 INTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD-GVHDY--RGIEDFPKLNQL 186

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 21/185 (11%), Positives = 56/185 (30%), Gaps = 36/185 (19%)

Query: 80  ASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFR 139
           ++ +  +           +    + SL ++ ++   +T L   ++Y  N+K L +     
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-- 76

Query: 140 LSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQ 199
                    + +  L  L               +    +   +  L  L  L LL     
Sbjct: 77  --HA--TNYNPISGLSNLERLRIMGK------DV----TSDKIPNLSGLTSLTLLD---- 118

Query: 200 SFGALQRLLSYCRLGSISTQCLC----LRHLN---NSNSLSVFAFASLRHLRTLQLYFND 252
                   +S+          +     +  ++   N     +    +L  L++L + F+ 
Sbjct: 119 --------ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG 170

Query: 253 LEELK 257
           + + +
Sbjct: 171 VHDYR 175

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.7 bits (145), Expect = 3e-10
 Identities = 48/255 (18%), Positives = 88/255 (34%), Gaps = 41/255 (16%)

Query: 17  LVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFF 76
           +      +T+  +       T +S     +  +  +     L  L L  N +  ++    
Sbjct: 24  IAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--L 81

Query: 77  HSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEY 136
            ++  +  L LS N  L+N+   I  L S++ LD++ T IT +   L  L NL+ L L+ 
Sbjct: 82  KNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDL 138

Query: 137 TFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTI 196
                +I    IS L  L  L+    G                  V +L  L +L+    
Sbjct: 139 N----QI--TNISPLAGLTNLQYLSIGNA---------------QVSDLTPLANLS---- 173

Query: 197 TLQSFGALQRL-LSYCRLGSIS--TQCLCLRHLN-NSNSLSVF-AFASLRHLRTLQLYFN 251
                  L  L     ++  IS       L  ++  +N +S     A+  +L  + L   
Sbjct: 174 ------KLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQ 227

Query: 252 DLEELKIDAGELKRI 266
            +    +       +
Sbjct: 228 TITNQPVFYNNNLVV 242

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 18/118 (15%), Positives = 48/118 (40%), Gaps = 6/118 (5%)

Query: 37  TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL 96
             + L  N I N++ +     L+ L + +  +  ++     +++ L  L    N+ + ++
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK-ISDI 188

Query: 97  PLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKML 154
              + +L +L  + +    I+ +   L    NL  + L     ++  P    ++L + 
Sbjct: 189 S-PLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQ-TITNQPVFYNNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 6/134 (4%)

Query: 17  LVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFF 76
           L L    +T    +        +S+    + +LT +    +L TL    N +  +S    
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--L 191

Query: 77  HSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEY 136
            S+ +L  + L  N+ + ++   + N  +L  + ++   IT  P+   Y  NL   N+  
Sbjct: 192 ASLPNLIEVHLKNNQ-ISDVS-PLANTSNLFIVTLTNQTITNQPVF--YNNNLVVPNVVK 247

Query: 137 TFRLSRIPQQVISD 150
               + I    ISD
Sbjct: 248 GPSGAPIAPATISD 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 37  TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL 96
             +SL  N I ++  +   P+L +L+L +N +  ++      +  L  L L  N+ + ++
Sbjct: 115 KSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQ-ISDI 171

Query: 97  PLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRA 156
              +  L  LQ+L +S   I+ L   L  L NL  L L         P    S+L +   
Sbjct: 172 V-PLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQ-ECLNKPINHQSNLVVPNT 228

Query: 157 LR 158
           ++
Sbjct: 229 VK 230

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 12/143 (8%)

Query: 17  LVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFF 76
             L    +T+A +        ++    + I+++  I   P +  LFL  N L  +     
Sbjct: 29  DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--L 86

Query: 77  HSMASLRVLILSYNR--SLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNL 134
            ++ +L  L L  N+   L +L     +L  L+ L +   GI+ +   L +L  L+ L L
Sbjct: 87  ANLKNLGWLFLDENKVKDLSSLK----DLKKLKSLSLEHNGISDIN-GLVHLPQLESLYL 141

Query: 135 EYTFRLSRIPQQVISDLKMLRAL 157
               +++ I   V+S L  L  L
Sbjct: 142 GNN-KITDI--TVLSRLTKLDTL 161

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 6/145 (4%)

Query: 17  LVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFF 76
             L    +T+A +        ++    + I+++  I   P +R L L  N L  +S    
Sbjct: 24  ANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--AL 81

Query: 77  HSMASLRVLILSYNRSLENLPLGIFN-LVSLQHLDISWTGITTLPIEL-KYLVNLKCLNL 134
             + +L  LIL+ N  L++LP G+F+ L +L+ L +    + +LP  +   L NL  LNL
Sbjct: 82  KELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140

Query: 135 EYTFRLSRIPQQVISDLKMLRALRM 159
            +  +L  +P+ V   L  L  L +
Sbjct: 141 AHN-QLQSLPKGVFDKLTNLTELDL 164

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.6 bits (141), Expect = 1e-09
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 5/109 (4%)

Query: 29  SIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILS 88
               + +   + L    +  L  +     +  L L  N L  +      ++  L VL  S
Sbjct: 436 LKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQAS 494

Query: 89  YNRSLENLPLGIFNLVSLQHLDISWTGITTLP--IELKYLVNLKCLNLE 135
            N  LEN+  G+ NL  LQ L +    +        L     L  LNL+
Sbjct: 495 DNA-LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.6 bits (128), Expect = 5e-08
 Identities = 27/127 (21%), Positives = 44/127 (34%), Gaps = 6/127 (4%)

Query: 32  MWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR 91
           M          +  ++N         +R L L    L  + +     +  +  L LS+NR
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNR 474

Query: 92  SLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQ-QVISD 150
            L  LP  +  L  L+ L  S   +  +   +  L  L+ L L    RL +    Q +  
Sbjct: 475 -LRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVS 531

Query: 151 LKMLRAL 157
              L  L
Sbjct: 532 CPRLVLL 538

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 27/120 (22%), Positives = 40/120 (33%), Gaps = 9/120 (7%)

Query: 46  IQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVS 105
              L  +          L S  L   S       A +RVL L++   L  L   +  L+ 
Sbjct: 408 FSTLKAVDPMRAAYLDDLRSKFLLENSVLK-MEYADVRVLHLAHKD-LTVLC-HLEQLLL 464

Query: 106 LQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFN 165
           + HLD+S   +  LP  L  L  L+ L       L  +       +  L  L+      N
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-----GVANLPRLQELLLCNN 518

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.4 bits (138), Expect = 2e-09
 Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 3/95 (3%)

Query: 43  QNAIQNLTEIPTCPRLRTLFLPSN-HLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF 101
             A+ +L  +P    L  L++ +  HL  +       +  LR L +  +  L  +    F
Sbjct: 18  DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAF 76

Query: 102 -NLVSLQHLDISWTGITTLPIELKYLVNLKCLNLE 135
                L  L++S+  + +L  +    ++L+ L L 
Sbjct: 77  HFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLS 111

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 5e-07
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 12/101 (11%)

Query: 55  CPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF-NLVSLQHLDISW 113
           C R   L    +              +L  L +   + L++L L     L  L++L I  
Sbjct: 15  CTRDGALDSLHH---------LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 114 TGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKM 153
           +G+  +  +   +   L  LNL +   L  +  + +  L +
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSL 105

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 6/141 (4%)

Query: 23  GLTEAPSIGMWKETTRMSLMQNAIQNL--TEIPTCPRLRTLFLPSNHLGTVSNNFFHSMA 80
                P+ G+      + L  N I  L      +   L+ L+L SN LG +    F S+ 
Sbjct: 30  RHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT 88

Query: 81  SLRVLILSYNRSLENLPLGIFN-LVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFR 139
            L VL L  N+ L  LP  +F+ LV L+ L +    +T LP  ++ L +L  L L    +
Sbjct: 89  QLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLAL-DQNQ 146

Query: 140 LSRIPQQVISDLKMLRALRMF 160
           L  IP      L  L    +F
Sbjct: 147 LKSIPHGAFDRLSSLTHAYLF 167

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 45/242 (18%), Positives = 85/242 (35%), Gaps = 47/242 (19%)

Query: 33  WKETTRMSLMQNAIQNLTEIP---TCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSY 89
           W +  + +L          +       +   L L   +L ++ +N       + VL ++ 
Sbjct: 33  WDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLP---PQITVLEITQ 89

Query: 90  NRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVIS 149
           N  L +LP    +L   ++LD     ++TLP     L +L   N     +L+ +P+   +
Sbjct: 90  NA-LISLPELPASL---EYLDACDNRLSTLPELPASLKHLDVDNN----QLTMLPEL-PA 140

Query: 150 DLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNL----LTITLQSFGALQ 205
            L+ +          N +L            L E    L+ L++    LT   +   +L+
Sbjct: 141 LLEYIN------ADNN-QLTM----------LPELPTSLEVLSVRNNQLTFLPELPESLE 183

Query: 206 RL-LSYCRLGSISTQCLCLRHLNNS--------NSLSVF--AFASLRHLRTLQLYFNDLE 254
            L +S   L S+    +   H   +        N ++       SL    T+ L  N L 
Sbjct: 184 ALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS 243

Query: 255 EL 256
             
Sbjct: 244 SR 245

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 4/90 (4%)

Query: 23  GLTEAPSIGMWKETTRMSLMQNAIQNL-TEIPTCPRLRTLFLPSNHLGTVSNNFFHSMAS 81
           GL   P  G+ ++ T + L  N    +  E+     L  + L +N + T+SN  F +M  
Sbjct: 21  GLKVLPK-GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ 79

Query: 82  LRVLILSYNRSLENLPLGIFN-LVSLQHLD 110
           L  LILSYNR L  +P   F+ L SL+ L 
Sbjct: 80  LLTLILSYNR-LRCIPPRTFDGLKSLRLLS 108

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 7/110 (6%)

Query: 49  LTEIPT-CPRLRT-LFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF-NLVS 105
           L  +P   PR  T L+L  N   T+      +   L ++ LS NR +  L    F N+  
Sbjct: 22  LKVLPKGIPRDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQ 79

Query: 106 LQHLDISWTGITTLPIEL-KYLVNLKCLNLEYTFRLSRIPQQVISDLKML 154
           L  L +S+  +  +P      L +L+ L+L +   +S +P+   +DL  L
Sbjct: 80  LLTLILSYNRLRCIPPRTFDGLKSLRLLSL-HGNDISVVPEGAFNDLSAL 128

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 16/85 (18%)

Query: 34  KETTRMSLMQNAIQ--------NLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVL 85
           K  T + L  N I         N+T+      L TL L  N L  +    F  + SLR+L
Sbjct: 54  KHLTLIDLSNNRISTLSNQSFSNMTQ------LLTLILSYNRLRCIPPRTFDGLKSLRLL 107

Query: 86  ILSYNRSLENLPLGIF-NLVSLQHL 109
            L  N  +  +P G F +L +L HL
Sbjct: 108 SLHGND-ISVVPEGAFNDLSALSHL 131

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 53.7 bits (130), Expect = 3e-08
 Identities = 46/241 (19%), Positives = 81/241 (33%), Gaps = 49/241 (20%)

Query: 55  CPRLRTLFLPSNHL-GTVS-NNFFHSMASLRVLILSYNRSLE-NLPLGIFNLVSLQHLDI 111
             R+  L L   +L       +   ++  L  L +    +L   +P  I  L  L +L I
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108

Query: 112 SWTGIT-TLPIELKYLVNLKCLNLEYTFRLS-RIPQQVISDLKMLRALRMFECGFNVELE 169
           + T ++  +P  L  +  L  L+  Y   LS  +P   IS L  L  +       +    
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPS-ISSLPNLVGITFDGNRIS---- 162

Query: 170 ADSI--LFGDSEVLVEELLV------------LKHLNLLTITL----------QSFGALQ 205
             +I   +G    L   + +              +LNL  + L            FG+ +
Sbjct: 163 -GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 206 RL----LSYCRL-GSIST--QCLCLRHLN-NSNSLS----VFAFASLRHLRTLQLYFNDL 253
                 L+   L   +        L  L+  +N +           L+ L +L + FN+L
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNL 280

Query: 254 E 254
            
Sbjct: 281 C 281

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 16/151 (10%)

Query: 17  LVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFF 76
             L    +T+  S          +   + IQ+L  +     L+ L L  N +  +S    
Sbjct: 24  QNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--L 81

Query: 77  HSMASLRVLILSYNR--SLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNL 134
             +  L  L ++ NR  +L  +         L  L +    +      L +L NL+ L++
Sbjct: 82  KDLTKLEELSVNRNRLKNLNGI-----PSACLSRLFLDNNELRDTD-SLIHLKNLEILSI 135

Query: 135 EYTFRLSRIPQQVISDLKMLRALRMFECGFN 165
                  ++  + I  L  L  L + +   N
Sbjct: 136 RNN----KL--KSIVMLGFLSKLEVLDLHGN 160

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.9 bits (125), Expect = 7e-08
 Identities = 30/230 (13%), Positives = 64/230 (27%), Gaps = 54/230 (23%)

Query: 41  LMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGI 100
                I  +   P         L    +  + +     ++ ++      +  +++L  G+
Sbjct: 4   QRPTPINQVFPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSN-IQSLA-GM 59

Query: 101 FNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMF 160
               +L+ L +S   I+ L   LK L  L+ L++             + +L  +      
Sbjct: 60  QFFTNLKELHLSHNQISDLS-PLKDLTKLEELSVNRN---------RLKNLNGI------ 103

Query: 161 ECGFNVELEADSILFGDSEVLVEELLVLKHLNLLT---ITLQSFGALQRL----LSYCRL 213
                                      L  L L         S   L+ L    +   +L
Sbjct: 104 -----------------------PSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKL 140

Query: 214 GSIS--TQCLCLRHLN-NSNSLSVF-AFASLRHLRTLQLYFNDLEELKID 259
            SI        L  L+ + N ++       L+ +  + L         + 
Sbjct: 141 KSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPVK 190

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 8/99 (8%)

Query: 39  MSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYN--RSLENL 96
           + L    I+   +     R R L L    +  +  N   ++     +  S N  R L+  
Sbjct: 2   VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 97  PLGIFNLVSLQHLDISWTGITTL-PIELKYLVNLKCLNL 134
           P     L  L+ L ++   I  +     + L +L  L L
Sbjct: 61  P----LLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 23/133 (17%)

Query: 4   RIASTINKEKENFLVLAGVGLTEAPSIGMW-KETTRMSLMQNAIQNLTEIPTCPRLRTLF 62
           + A   N  ++  L L G  +    ++G    +   +    N I+ L   P   RL+TL 
Sbjct: 11  QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLL 70

Query: 63  LPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIE 122
           + +N +  +      ++  L  LIL+ N           +LV L  LD            
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNN-----------SLVELGDLD-----------P 108

Query: 123 LKYLVNLKCLNLE 135
           L  L +L  L + 
Sbjct: 109 LASLKSLTYLCIL 121

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 9/100 (9%)

Query: 40  SLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR--SLENLP 97
           +L  N I+ ++ +     LR L L  N +  +  N      +L  L +SYN+  SL  + 
Sbjct: 54  ALSTNNIEKISSLSGMENLRILSLGRNLIKKIE-NLDAVADTLEELWISYNQIASLSGIE 112

Query: 98  LGIFNLVSLQHLDISWTGITTLPI--ELKYLVNLKCLNLE 135
                LV+L+ L +S   IT      +L  L  L+ L L 
Sbjct: 113 ----KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA 148

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 18/131 (13%)

Query: 35  ETTRMSLMQNAIQNLTE-IPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR-- 91
           E   +  M   I+ +   + T    + L L +N++  +S+     M +LR+L L  N   
Sbjct: 26  EKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIK 83

Query: 92  SLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDL 151
            +ENL        +L+ L IS+  I +L   ++ LVNL+ L +             I++ 
Sbjct: 84  KIENLD---AVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNK---------ITNW 130

Query: 152 KMLRALRMFEC 162
             +  L   + 
Sbjct: 131 GEIDKLAALDK 141

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 54/206 (26%), Positives = 78/206 (37%), Gaps = 51/206 (24%)

Query: 50  TEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFN-LVSLQH 108
           + IP       L L S  L T+S+  F  +  L  L L YN+ L+ L  G+F+ L  L  
Sbjct: 31  SGIPA--DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGT 87

Query: 109 LDISWTGITTLPIEL-KYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVE 167
           L ++   + +LP+ +  +L  L  L L    +L  +P  V            F       
Sbjct: 88  LGLANNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGV------------F------- 127

Query: 168 LEADSILFGDSEVLVEELLVLKHLNLLTITLQSF--GALQRLLSYCRLGSISTQCLCLRH 225
              D         L +    LK L L T  LQS   GA  +L +   L            
Sbjct: 128 ---DR--------LTK----LKELRLNTNQLQSIPAGAFDKLTNLQTLS---------LS 163

Query: 226 LNNSNSLSVFAFASLRHLRTLQLYFN 251
            N   S+   AF  L  L+T+ L+ N
Sbjct: 164 TNQLQSVPHGAFDRLGKLQTITLFGN 189

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 7e-07
 Identities = 64/378 (16%), Positives = 121/378 (32%), Gaps = 107/378 (28%)

Query: 36  TTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNH------LGTVSNN-----F-FHSMASLR 83
           T+R     N    +  I     LR L     +      L  V N      F        +
Sbjct: 214 TSRSDHSSNIKLRIHSIQA--ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC----K 267

Query: 84  VLILSYNRSLEN-LPLGIFNLVSLQHLDISWTGITTLPIELKYL-VNLKCL--------- 132
           +L+ +  + + + L       +SL H  ++ T      + LKYL    + L         
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327

Query: 133 ------------------NLEYTF--RLSRIPQQVISDL------KMLRALRMFECGFNV 166
                             N ++    +L+ I +  ++ L      KM   L +F    ++
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 167 ELEADSILFGDS-----EVLVEEL----LVLKHLNLLTITLQSF-----------GAL-Q 205
                S+++ D       V+V +L    LV K     TI++ S             AL +
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447

Query: 206 RLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLY--FNDLEELKIDAGEL 263
            ++ +  +     +      L        F      HL+ ++          + +D   L
Sbjct: 448 SIVDHYNI----PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503

Query: 264 KR-IREICG--------FHSLQKV-FYK--ILKIEARDMACTCSQYQACPRGLTKF---- 307
           ++ IR             ++LQ++ FYK  I   + +        Y+     +  F    
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK--------YERLVNAILDFLPKI 555

Query: 308 EEHPLKRLECAELKELPL 325
           EE+ L   +  +L  + L
Sbjct: 556 EEN-LICSKYTDLLRIAL 572

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 8e-05
 Identities = 53/387 (13%), Positives = 97/387 (25%), Gaps = 125/387 (32%)

Query: 15  NFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNN 74
            FL+         PS+       +   + N  Q   +     RL+        L  +   
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-SRLQPYLKLRQALLELRPA 150

Query: 75  ---FFHSMA-----SLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYL 126
                  +       + + +    +    +   IF           W             
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-----------WL------------ 187

Query: 127 VNLKCLNLEYTFRLSRIPQQVISDLKMLRAL-RMFECGFNVELEADSILFGDSEVLVEEL 185
                       +    P+ V   L+ML+ L    +  +    +  S +      +  EL
Sbjct: 188 ----------NLKNCNSPETV---LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 186 LVLKHLNLLTITLQSFGALQRLLS---YCRLGSISTQCL-CLRHLNNSNSLSVFAF---- 237
                              +RLL    Y         CL  L ++ N+ + + F      
Sbjct: 235 -------------------RRLLKSKPYEN-------CLLVLLNVQNAKAWNAFNLSCKI 268

Query: 238 ----------ASLRHLRTLQLYFNDLEE--------------LKIDAGELKRIREICGFH 273
                       L    T  +  +                  L     +L   RE+   +
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP--REVLTTN 326

Query: 274 SLQKVFYKILKIEARDMACTCSQYQ--ACPRGLTKFEEHPLKRLECAELKEL-------P 324
             +     I+    RD   T   ++   C + LT   E  L  LE AE +++       P
Sbjct: 327 PRR---LSIIAESIRDGLATWDNWKHVNCDK-LTTIIESSLNVLEPAEYRKMFDRLSVFP 382

Query: 325 LDCNHGLEQKIIIKGQEHWWNELQWDD 351
              +      I        W ++   D
Sbjct: 383 PSAH------IPTILLSLIWFDVIKSD 403

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 6/112 (5%)

Query: 50  TEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFN-LVSLQH 108
           T IP   +   L L +N L ++ N  F  + SL  L L  N+ L++LP G+FN L SL +
Sbjct: 24  TGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTY 80

Query: 109 LDISWTGITTLPIEL-KYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRM 159
           L++S   + +LP  +   L  LK L L    +L  +P  V   L  L+ LR+
Sbjct: 81  LNLSTNQLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRL 131

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 50  TEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFN-LVSLQH 108
           T IP+      L L SN L ++ +  F  +  L  L LS N+ +++LP G+F+ L  L  
Sbjct: 24  TGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTI 80

Query: 109 LDISWTGITTLPIEL-KYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMF 160
           L +    + +LP  +   L  LK L L  T +L  +P  +   L  L+ + + 
Sbjct: 81  LYLHENKLQSLPNGVFDKLTQLKELAL-DTNQLKSVPDGIFDRLTSLQKIWLH 132

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 23  GLTEAPSIGMWKETTRMSLMQNAIQNLTEIPT---CPRLRTLFLPSNHLGTVSNNFFHSM 79
           GL E P   +   TT + L  N +  ++        P L  L L  N L  +  N F   
Sbjct: 19  GLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77

Query: 80  ASLRVLILSYNRSLENLPLGIFN-LVSLQHLDISWTGITTLP 120
           + ++ L L  N+ ++ +   +F  L  L+ L++    I+ + 
Sbjct: 78  SHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVM 118

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 43  QNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFN 102
            N  +          L  L   +  L +++N     +  L+ L LS NR    L +    
Sbjct: 29  SNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDNRVSGGLEVLAEK 86

Query: 103 LVSLQHLDISWTGITTLPI--ELKYLVNLKCLNLE 135
             +L HL++S   I  L     LK L NLK L+L 
Sbjct: 87  CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.5 bits (110), Expect = 9e-06
 Identities = 39/203 (19%), Positives = 71/203 (34%), Gaps = 20/203 (9%)

Query: 55  CPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLV---SLQHLDI 111
           C  L ++ +  +        FF + A+L             +P    NLV    L  L +
Sbjct: 219 CRSLVSVKV-GDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGL 277

Query: 112 SWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEAD 171
           S+ G   +PI   +   ++ L+L Y    +     +I     L  L       +  LE  
Sbjct: 278 SYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEV- 336

Query: 172 SILFGDSEVLVEELLVLKHLNL-LTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSN 230
                    L +    LK L +      Q     + L+S   L +++  C  L ++    
Sbjct: 337 ---------LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV 387

Query: 231 SL----SVFAFAS-LRHLRTLQL 248
           S     S+ +  + L++L   +L
Sbjct: 388 SDITNESLESIGTYLKNLCDFRL 410

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 35/208 (16%), Positives = 67/208 (32%), Gaps = 31/208 (14%)

Query: 55  CPRLRTLFLPSNHLGTVSNNFFHSMA----SLRVLILSYNR----SLENLPLGIFNLVSL 106
           C +++TL +  +        + H +A    SL VL          S ++L     N  SL
Sbjct: 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL 222

Query: 107 QHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV 166
             + +    I  L    K   NL+            +P++ ++ L   R L         
Sbjct: 223 VSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN-LVFPRKLCRLGL---- 277

Query: 167 ELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHL 226
                 +   +  +L      ++ L+LL   L++               +  +C  L  L
Sbjct: 278 ----SYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCT----------LIQKCPNLEVL 323

Query: 227 NNSNSLSVFAFASL----RHLRTLQLYF 250
              N +       L    + L+ L++  
Sbjct: 324 ETRNVIGDRGLEVLAQYCKQLKRLRIER 351

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 40  SLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR--SLENLP 97
           SL+   + +++ +P  P+L+ L L  N +    +     + +L  L LS N+   +  L 
Sbjct: 55  SLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL- 113

Query: 98  LGIFNLVSLQHLDIS 112
             +  L  L+ LD+ 
Sbjct: 114 EPLKKLECLKSLDLF 128

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 39/232 (16%), Positives = 68/232 (29%), Gaps = 25/232 (10%)

Query: 48  NLTEIPTCPRLRTLFLPSNHL---GTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLV 104
             T+I     L+ L + +  +             ++ L+ L L         P  +    
Sbjct: 60  QFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119

Query: 105 --SLQHLDISWTGITTLPIELKYLVN-----LKCLNLEYTFRLSRIPQQVISDLKMLRAL 157
              L  L++      T    L  L       LK L++           + +     L  L
Sbjct: 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTL 178

Query: 158 RMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTIT---LQSFGALQRL----LSY 210
            + +     E    S L       ++ L  L++  + T +        A  +L    LS+
Sbjct: 179 DLSDNPELGERGLISALCPLKFPTLQVL-ALRNAGMETPSGVCSALAAARVQLQGLDLSH 237

Query: 211 CRLGSISTQCLC-----LRHLN-NSNSLSVFAFASLRHLRTLQLYFNDLEEL 256
             L   +    C     L  LN +   L          L  L L +N L+  
Sbjct: 238 NSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRN 289

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 34/237 (14%), Positives = 59/237 (24%), Gaps = 24/237 (10%)

Query: 37  TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLG--TVSNNFFHSMASLRVLILSYNRSLE 94
               +    +     +     L+ L L +  +           +   L +L L       
Sbjct: 76  RAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT 135

Query: 95  NLP----LGIFNLVSLQHLDISWTGITTLPIEL-KYLVNLKCLNLEYTFRLSRIPQQVIS 149
                  L  +    L+ L I+         E  +    L  L+L     L         
Sbjct: 136 RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195

Query: 150 DLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNL---------LTITLQS 200
                  L++                G    L    + L+ L+L            +   
Sbjct: 196 CPLKFPTLQVLALRNA----GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 201 FGALQRL-LSYCRLGSISTQCLC-LRHLN-NSNSLSVF-AFASLRHLRTLQLYFNDL 253
              L  L LS+  L  +       L  L+ + N L    +   L  +  L L  N  
Sbjct: 252 PSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPF 308

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 40.3 bits (93), Expect = 6e-04
 Identities = 27/173 (15%), Positives = 50/173 (28%), Gaps = 17/173 (9%)

Query: 86  ILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQ 145
           I+       +     +  +  +  +ISW     L   L  +  L  L ++ T  LS   +
Sbjct: 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK 190

Query: 146 QVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFG--- 202
                   L++L +   G               ++L  +L  L+ L L            
Sbjct: 191 P----RPNLKSLEIISGGLPDS--------VVEDILGSDLPNLEKLVLYVGVEDYGFDGD 238

Query: 203 --ALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDL 253
               + L S  R  ++    +      N           L  L T+ +    L
Sbjct: 239 MNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 50  TEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFN-LVSLQH 108
           T IPT    + L+L  N +  +    F  +  L  L L  N+ L  LP G+F+ L  L  
Sbjct: 26  TGIPT--TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQ 82

Query: 109 LDIS 112
           L ++
Sbjct: 83  LSLN 86

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	366
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.92
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.92
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.92
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.92
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.91
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.91
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.91
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.91
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.91
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.91
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.91
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.9
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.9
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.9
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.9
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.9
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.9
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.9
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.9
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.89
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.89
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.89
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.89
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.88
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.88
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.88
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.87
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.87
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.87
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.86
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.86
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.86
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.86
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.85
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.85
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.85
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.85
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.85
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.84
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.84
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.83
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.83
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.82
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.81
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.81
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.81
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.8
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.8
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.79
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.79
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.78
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.78
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.78
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.77
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.77
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.77
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.76
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.76
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.76
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.75
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.75
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.73
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.73
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.73
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.73
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.73
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.72
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.72
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.69
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.68
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.67
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.67
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.67
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.66
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.66
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.65
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.65
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.64
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.63
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.62
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.62
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.62
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.61
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.6
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.54
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.54
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.53
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.52
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.48
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.47
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.47
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.47
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.47
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.46
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.46
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.45
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.44
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.34
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.31
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.28
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.27
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.27
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.26
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.23
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.22
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.21
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.21
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.09
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.04
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.03
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.02
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.96
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.94
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.88
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.54
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.49
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.4
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.4
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.37
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.34
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.29
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.28
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.22
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.05
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.93
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.91
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.75
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.47
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.61
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.22
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.18
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.85

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=7.4e-25  Score=200.80  Aligned_cols=272  Identities=17%  Similarity=0.215  Sum_probs=155.5

Q ss_pred             CccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCC
Q 038551           13 KENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRS   92 (366)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~   92 (366)
                      ..+.+.+.++.+.+++.+..+++|+.|++++|.++.++....+++|++|++++|.+..++.  +..+++|++|++++| .
T Consensus        45 ~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n-~  121 (347)
T 4fmz_A           45 SITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNED-N  121 (347)
T ss_dssp             TCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTS-C
T ss_pred             cccEEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCC-c
Confidence            4456666666666666666677777777777777666555666777777777776666543  666777777777776 4


Q ss_pred             CCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccc
Q 038551           93 LENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADS  172 (366)
Q Consensus        93 ~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  172 (366)
                      ++.++. +..+++|++|++++|.....+..+..+++|++|++++| .+...+.  +..+++|++|++.+|.+..      
T Consensus       122 i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~------  191 (347)
T 4fmz_A          122 ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIED------  191 (347)
T ss_dssp             CCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCCC------
T ss_pred             ccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCcccc------
Confidence            555554 66667777777777643333333666777777777763 3444433  5566677777777776653      


Q ss_pred             cccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCc
Q 038551          173 ILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFND  252 (366)
Q Consensus       173 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  252 (366)
                               ...+..+++|+.+++++|.+..++.+..+.+     ++.|++.++.-.....   +..+++|++|++++|.
T Consensus       192 ---------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-----L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~  254 (347)
T 4fmz_A          192 ---------ISPLASLTSLHYFTAYVNQITDITPVANMTR-----LNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQ  254 (347)
T ss_dssp             ---------CGGGGGCTTCCEEECCSSCCCCCGGGGGCTT-----CCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC
T ss_pred             ---------cccccCCCccceeecccCCCCCCchhhcCCc-----CCEEEccCCccCCCcc---hhcCCCCCEEECCCCc
Confidence                     1115556666666666666655544332332     3334444432221111   5566667777776666


Q ss_pred             cceEeccccccccccccCCCCCcceeeeecccceeEEeeccCccccccccccceEEeecCc--------ccCCccccccc
Q 038551          253 LEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLK--------RLECAELKELP  324 (366)
Q Consensus       253 l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~--------~~~~~~L~~L~  324 (366)
                      ++.++.  .        ..+++|+.|+++-..+     . .-+.+..+++ |++|++++|+        +..+++|+.|+
T Consensus       255 l~~~~~--~--------~~l~~L~~L~l~~n~l-----~-~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  317 (347)
T 4fmz_A          255 ISDINA--V--------KDLTKLKMLNVGSNQI-----S-DISVLNNLSQ-LNSLFLNNNQLGNEDMEVIGGLTNLTTLF  317 (347)
T ss_dssp             CCCCGG--G--------TTCTTCCEEECCSSCC-----C-CCGGGGGCTT-CSEEECCSSCCCGGGHHHHHTCTTCSEEE
T ss_pred             cCCChh--H--------hcCCCcCEEEccCCcc-----C-CChhhcCCCC-CCEEECcCCcCCCcChhHhhccccCCEEE
Confidence            555421  1        4456666666541110     0 0111222455 6666666655        34556666666


Q ss_pred             CCCCCCC
Q 038551          325 LDCNHGL  331 (366)
Q Consensus       325 l~~n~~~  331 (366)
                      +++|.+.
T Consensus       318 L~~n~l~  324 (347)
T 4fmz_A          318 LSQNHIT  324 (347)
T ss_dssp             CCSSSCC
T ss_pred             ccCCccc
Confidence            6666554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.93  E-value=3.1e-25  Score=210.75  Aligned_cols=308  Identities=18%  Similarity=0.165  Sum_probs=211.0

Q ss_pred             ccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCC-C-CCCCCccEEEccCCCCc-cccchhhcCCCCCCEEEccCC
Q 038551           14 ENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTE-I-PTCPRLRTLFLPSNHLG-TVSNNFFHSMASLRVLILSYN   90 (366)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~-~i~~~~~~~l~~L~~L~l~~~   90 (366)
                      ...+++.+.++..+|.+.  ++|++|++++|.++.+++ . ..+++|++|++++|.+. .+++..|..+++|++|++++|
T Consensus        12 ~~~~~c~~~~l~~lp~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n   89 (455)
T 3v47_A           12 GYNAICINRGLHQVPELP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN   89 (455)
T ss_dssp             TTEEECCSSCCSSCCCCC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred             ccccCcCCCCcccCCCCC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence            446788889999998743  899999999999999743 3 89999999999999885 677777899999999999999


Q ss_pred             CCCCCcchhhcCCCCCcEEEcccccccc-cccc--ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcccc
Q 038551           91 RSLENLPLGIFNLVSLQHLDISWTGITT-LPIE--LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVE  167 (366)
Q Consensus        91 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~-l~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  167 (366)
                      ...+..|..++++++|++|++++|.++. ++..  +..+++|++|++++|...+..|...+.++++|++|++.+|.+...
T Consensus        90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  169 (455)
T 3v47_A           90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI  169 (455)
T ss_dssp             TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred             ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence            4444457789999999999999999874 4443  889999999999996554444555478999999999999988752


Q ss_pred             cc--cccc-------------ccCC------chhhhhhhhcCcccceeeeccccchhhH--hHhhhcccCc---------
Q 038551          168 LE--ADSI-------------LFGD------SEVLVEELLVLKHLNLLTITLQSFGALQ--RLLSYCRLGS---------  215 (366)
Q Consensus       168 ~~--~~~~-------------~~~~------~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~l~~~~~l~~---------  215 (366)
                      ..  +...             ....      .......+..+++|+.|++++|.+.+..  .+........         
T Consensus       170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~  249 (455)
T 3v47_A          170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS  249 (455)
T ss_dssp             CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred             ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence            10  0000             0000      0000111234567888888888765421  1211110011         


Q ss_pred             -------------------------ccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccccccccccC
Q 038551          216 -------------------------ISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREIC  270 (366)
Q Consensus       216 -------------------------l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~  270 (366)
                                               -.++.|++..+. +.......+..+++|++|++++|.++.++...+        .
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--------~  320 (455)
T 3v47_A          250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF--------W  320 (455)
T ss_dssp             TTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTT--------T
T ss_pred             cccccccchhhhccCcccccccccccCceEEEecCcc-ccccchhhcccCCCCCEEECCCCcccccChhHh--------c
Confidence                                     013334333322 111111236677888888888888777654333        4


Q ss_pred             CCCCcceeeee--------------cccceeEEeeccCc-------cccccccccceEEeecCc--------ccCCcccc
Q 038551          271 GFHSLQKVFYK--------------ILKIEARDMACTCS-------QYQACPRGLTKFEEHPLK--------RLECAELK  321 (366)
Q Consensus       271 ~~~~L~~L~l~--------------l~~l~~L~l~~~c~-------~l~~~~~~L~~L~l~~~~--------~~~~~~L~  321 (366)
                      .+++|+.|+++              ++.++.|+++ +|.       .+..+++ |++|++++|.        +..+++|+
T Consensus       321 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~  398 (455)
T 3v47_A          321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS-YNHIRALGDQSFLGLPN-LKELALDTNQLKSVPDGIFDRLTSLQ  398 (455)
T ss_dssp             TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC-SSCCCEECTTTTTTCTT-CCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             CcccCCEEECCCCccCCcChhHhcCcccCCEEECC-CCcccccChhhcccccc-ccEEECCCCccccCCHhHhccCCccc
Confidence            57788888877              3455777777 662       1223677 9999999888        46788999


Q ss_pred             cccCCCCCCCCce
Q 038551          322 ELPLDCNHGLEQK  334 (366)
Q Consensus       322 ~L~l~~n~~~~~~  334 (366)
                      .|++++|++.+..
T Consensus       399 ~L~l~~N~l~~~~  411 (455)
T 3v47_A          399 KIWLHTNPWDCSC  411 (455)
T ss_dssp             EEECCSSCBCCCT
T ss_pred             EEEccCCCcccCC
Confidence            9999999887654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.93  E-value=5.2e-25  Score=205.14  Aligned_cols=279  Identities=16%  Similarity=0.172  Sum_probs=172.6

Q ss_pred             CCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCc-chhhcCCCCCcE
Q 038551           32 MWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL-PLGIFNLVSLQH  108 (366)
Q Consensus        32 ~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~  108 (366)
                      .+++++.|++.++.+..+|..  ..+++|++|++++|.+..+++..+..+++|++|++++| .++.+ |..++++++|++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCE
Confidence            357788888888888777765  66778888888888887777655777888888888888 44444 455677888888


Q ss_pred             EEcccccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCC----chhhhh
Q 038551          109 LDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGD----SEVLVE  183 (366)
Q Consensus       109 L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~~~~~~  183 (366)
                      |++++|.++.+|.. +..+++|++|++++| .+..++...+.++++|++|++.+|.+.... +......+    ......
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBCC-GGGCTTCSEEECCSSCCS
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCccc-cccccccceeeccccccc
Confidence            88888888877765 477888888888874 445555444777788888888888776410 00000000    000000


Q ss_pred             hhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEecccccc
Q 038551          184 ELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGEL  263 (366)
Q Consensus       184 ~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~  263 (366)
                      .+...+.|+.|++++|.+..++..    ...  .++.|++.++.-...   ..+..+++|++|++++|.++.+....+  
T Consensus       200 ~~~~~~~L~~L~l~~n~l~~~~~~----~~~--~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~--  268 (390)
T 3o6n_A          200 TLAIPIAVEELDASHNSINVVRGP----VNV--ELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPF--  268 (390)
T ss_dssp             EEECCSSCSEEECCSSCCCEEECC----CCS--SCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGG--
T ss_pred             ccCCCCcceEEECCCCeeeecccc----ccc--cccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCcChhHc--
Confidence            111123344444444444333210    011  244455544322221   236667777777777777766644333  


Q ss_pred             ccccccCCCCCcceeeee-------------cccceeEEeeccCc------cccccccccceEEeecCc-----ccCCcc
Q 038551          264 KRIREICGFHSLQKVFYK-------------ILKIEARDMACTCS------QYQACPRGLTKFEEHPLK-----RLECAE  319 (366)
Q Consensus       264 ~~~~~~~~~~~L~~L~l~-------------l~~l~~L~l~~~c~------~l~~~~~~L~~L~l~~~~-----~~~~~~  319 (366)
                            ..+++|+.|+++             +++++.|+++ +|.      .+..+++ |++|++++|+     +..+++
T Consensus       269 ------~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~l~~-L~~L~L~~N~i~~~~~~~~~~  340 (390)
T 3o6n_A          269 ------VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS-HNHLLHVERNQPQFDR-LENLYLDHNSIVTLKLSTHHT  340 (390)
T ss_dssp             ------TTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECC-SSCCCCCGGGHHHHTT-CSEEECCSSCCCCCCCCTTCC
T ss_pred             ------cccccCCEEECCCCcCcccCcccCCCCCCCEEECC-CCcceecCccccccCc-CCEEECCCCccceeCchhhcc
Confidence                  446667777666             3445666666 552      1222677 9999999988     678889


Q ss_pred             cccccCCCCCCCC
Q 038551          320 LKELPLDCNHGLE  332 (366)
Q Consensus       320 L~~L~l~~n~~~~  332 (366)
                      |+.|++++|++..
T Consensus       341 L~~L~l~~N~~~~  353 (390)
T 3o6n_A          341 LKNLTLSHNDWDC  353 (390)
T ss_dssp             CSEEECCSSCEEH
T ss_pred             CCEEEcCCCCccc
Confidence            9999999998743

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=9.2e-25  Score=200.17  Aligned_cols=266  Identities=18%  Similarity=0.219  Sum_probs=212.2

Q ss_pred             CCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhh
Q 038551           21 GVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGI  100 (366)
Q Consensus        21 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~  100 (366)
                      ..++.++..+..+++|+.|++.++.+..++....+++|++|++++|.+..+++  +..+++|++|++++| .++.++ .+
T Consensus        31 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~  106 (347)
T 4fmz_A           31 KASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDIS-AL  106 (347)
T ss_dssp             CSCTTSEECHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GG
T ss_pred             ccccCCcccchhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCch-HH
Confidence            34445555566789999999999999998877889999999999999998877  889999999999999 677776 48


Q ss_pred             cCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchh
Q 038551          101 FNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEV  180 (366)
Q Consensus       101 ~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  180 (366)
                      .++++|++|++++|.++.++. +..+++|++|++++|......+.  +..+++|++|++.+|.+..             .
T Consensus       107 ~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~-------------~  170 (347)
T 4fmz_A          107 QNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD-------------V  170 (347)
T ss_dssp             TTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCC-------------C
T ss_pred             cCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCC-------------c
Confidence            999999999999999998877 88999999999999777776655  8899999999999999875             1


Q ss_pred             hhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccc
Q 038551          181 LVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDA  260 (366)
Q Consensus       181 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~  260 (366)
                        ..+..+++|+.|++++|.+..++.+..   ++.  +..+++..+.-.....   +..+++|++|++++|.++.++. .
T Consensus       171 --~~~~~l~~L~~L~l~~n~l~~~~~~~~---l~~--L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~-~  239 (347)
T 4fmz_A          171 --TPIANLTDLYSLSLNYNQIEDISPLAS---LTS--LHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSP-L  239 (347)
T ss_dssp             --GGGGGCTTCSEEECTTSCCCCCGGGGG---CTT--CCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG-G
T ss_pred             --hhhccCCCCCEEEccCCcccccccccC---CCc--cceeecccCCCCCCch---hhcCCcCCEEEccCCccCCCcc-h
Confidence              127789999999999999888776444   444  4446665543222222   7889999999999998887653 1


Q ss_pred             cccccccccCCCCCcceeeeecccceeEEeeccCccccccccccceEEeecCc------ccCCcccccccCCCCCCCCc
Q 038551          261 GELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLK------RLECAELKELPLDCNHGLEQ  333 (366)
Q Consensus       261 ~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~------~~~~~~L~~L~l~~n~~~~~  333 (366)
                               ..+++|+.|+++-..+     . ..+.+..+++ |++|++++|.      +..+++|+.|++++|.+.+.
T Consensus       240 ---------~~l~~L~~L~l~~n~l-----~-~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~  302 (347)
T 4fmz_A          240 ---------ANLSQLTWLEIGTNQI-----S-DINAVKDLTK-LKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNE  302 (347)
T ss_dssp             ---------TTCTTCCEEECCSSCC-----C-CCGGGTTCTT-CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGG
T ss_pred             ---------hcCCCCCEEECCCCcc-----C-CChhHhcCCC-cCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCc
Confidence                     6688888888762222     1 1223444788 9999999998      67889999999999998643

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.93  E-value=2.2e-24  Score=206.23  Aligned_cols=292  Identities=23%  Similarity=0.253  Sum_probs=196.0

Q ss_pred             eccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCE
Q 038551            7 STINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRV   84 (366)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~   84 (366)
                      |.|..+ ...+.+.+.++..+|.-. .++++.|++++|.++.++..  ..+++|++|++++|.+..+.+..|..+++|++
T Consensus         7 C~C~~~-~~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~   84 (477)
T 2id5_A            7 CECSAQ-DRAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRT   84 (477)
T ss_dssp             CEEETT-TTEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CeECCC-CCEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCE
Confidence            666433 457888888888887522 36899999999999987543  78899999999999998886666889999999


Q ss_pred             EEccCCCCCCCcch-hhcCCCCCcEEEccccccccc-cccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecC
Q 038551           85 LILSYNRSLENLPL-GIFNLVSLQHLDISWTGITTL-PIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFEC  162 (366)
Q Consensus        85 L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  162 (366)
                      |++++| .++.+|. .+.++++|++|++++|.+..+ +..+..+++|++|++++| .+..++...+.++++|++|++.+|
T Consensus        85 L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n  162 (477)
T 2id5_A           85 LGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKC  162 (477)
T ss_dssp             EECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESC
T ss_pred             EECCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCC
Confidence            999998 6676764 468889999999999988865 445888899999999984 555554444788889999999998


Q ss_pred             CccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCC--------------
Q 038551          163 GFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNN--------------  228 (366)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~--------------  228 (366)
                      .+..             .....+..+++|+.|++++|.+..++.. .+..+.+  ++.|++.++..              
T Consensus       163 ~l~~-------------~~~~~l~~l~~L~~L~l~~n~i~~~~~~-~~~~l~~--L~~L~l~~~~~~~~~~~~~~~~~~L  226 (477)
T 2id5_A          163 NLTS-------------IPTEALSHLHGLIVLRLRHLNINAIRDY-SFKRLYR--LKVLEISHWPYLDTMTPNCLYGLNL  226 (477)
T ss_dssp             CCSS-------------CCHHHHTTCTTCCEEEEESCCCCEECTT-CSCSCTT--CCEEEEECCTTCCEECTTTTTTCCC
T ss_pred             cCcc-------------cChhHhcccCCCcEEeCCCCcCcEeChh-hcccCcc--cceeeCCCCccccccCcccccCccc
Confidence            8875             3445567778888888877766654321 1222222  23333333222              


Q ss_pred             ---------CCCcchhhhccCCcCcEEEeccCccceEeccccccccccccCCCCCcceeeeecccceeEEeeccCccccc
Q 038551          229 ---------SNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQA  299 (366)
Q Consensus       229 ---------~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~l~~  299 (366)
                               ++..+...+..+++|++|++++|.++.++...+        ..+++|+.|+++-..+..+.    -..+..
T Consensus       227 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~----~~~~~~  294 (477)
T 2id5_A          227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML--------HELLRLQEIQLVGGQLAVVE----PYAFRG  294 (477)
T ss_dssp             SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC--------TTCTTCCEEECCSSCCSEEC----TTTBTT
T ss_pred             cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc--------cccccCCEEECCCCccceEC----HHHhcC
Confidence                     122222234555566666666665555543322        33455555555311111110    112333


Q ss_pred             cccccceEEeecCc--------ccCCcccccccCCCCCCC
Q 038551          300 CPRGLTKFEEHPLK--------RLECAELKELPLDCNHGL  331 (366)
Q Consensus       300 ~~~~L~~L~l~~~~--------~~~~~~L~~L~l~~n~~~  331 (366)
                      +++ |++|+|++|.        +..+++|+.|++++|++.
T Consensus       295 l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          295 LNY-LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             CTT-CCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             ccc-CCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            677 9999998887        567888999999998864

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.92  E-value=2.7e-24  Score=205.64  Aligned_cols=264  Identities=17%  Similarity=0.167  Sum_probs=200.2

Q ss_pred             cEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCc-chhhcCCCCCcEEEccccc
Q 038551           37 TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL-PLGIFNLVSLQHLDISWTG  115 (366)
Q Consensus        37 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~  115 (366)
                      +.++.+++.++.+|.. -.++++.|++++|.+..+++..|..+++|++|++++| .++.+ |..+.++++|++|++++|.
T Consensus        14 ~~v~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             TEEECCSCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCc
Confidence            5788888889888864 2358999999999999987777999999999999999 55544 7789999999999999999


Q ss_pred             ccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCccccee
Q 038551          116 ITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLL  194 (366)
Q Consensus       116 ~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  194 (366)
                      ++.+|.. +..+++|++|++++| .+..++...+.++++|++|++.+|.+..             .....+..+++|+.|
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~l~~L~~L  157 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVY-------------ISHRAFSGLNSLEQL  157 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCTTCCE-------------ECTTSSTTCTTCCEE
T ss_pred             CCccCcccccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCCccce-------------eChhhccCCCCCCEE
Confidence            9988875 789999999999995 5555544448899999999999999875             455677889999999


Q ss_pred             eeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccC-ccceEeccccccccccccCCCC
Q 038551          195 TITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFN-DLEELKIDAGELKRIREICGFH  273 (366)
Q Consensus       195 ~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~l~~~~~~~~~~~~~~~~~  273 (366)
                      ++++|.+..++.- .+.++.+|....+.-+.+..+..   ..+..+++|++|++++| .+..++....         ...
T Consensus       158 ~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~---------~~~  224 (477)
T 2id5_A          158 TLEKCNLTSIPTE-ALSHLHGLIVLRLRHLNINAIRD---YSFKRLYRLKVLEISHWPYLDTMTPNCL---------YGL  224 (477)
T ss_dssp             EEESCCCSSCCHH-HHTTCTTCCEEEEESCCCCEECT---TCSCSCTTCCEEEEECCTTCCEECTTTT---------TTC
T ss_pred             ECCCCcCcccChh-HhcccCCCcEEeCCCCcCcEeCh---hhcccCcccceeeCCCCccccccCcccc---------cCc
Confidence            9999988876531 13344442223333333333322   23778899999999998 5666654332         234


Q ss_pred             Ccceeeee--------------cccceeEEeeccCc-------cccccccccceEEeecCc--------ccCCccccccc
Q 038551          274 SLQKVFYK--------------ILKIEARDMACTCS-------QYQACPRGLTKFEEHPLK--------RLECAELKELP  324 (366)
Q Consensus       274 ~L~~L~l~--------------l~~l~~L~l~~~c~-------~l~~~~~~L~~L~l~~~~--------~~~~~~L~~L~  324 (366)
                      +|+.|+++              +++++.|+++ ++.       .+..+++ |++|+|++|.        +..+++|+.|+
T Consensus       225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  302 (477)
T 2id5_A          225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLS-YNPISTIEGSMLHELLR-LQEIQLVGGQLAVVEPYAFRGLNYLRVLN  302 (477)
T ss_dssp             CCSEEEEESSCCCSCCHHHHTTCTTCCEEECC-SSCCCEECTTSCTTCTT-CCEEECCSSCCSEECTTTBTTCTTCCEEE
T ss_pred             cccEEECcCCcccccCHHHhcCccccCeeECC-CCcCCccChhhcccccc-CCEEECCCCccceECHHHhcCcccCCEEE
Confidence            67777766              3445667776 552       1233678 9999999987        67899999999


Q ss_pred             CCCCCCC
Q 038551          325 LDCNHGL  331 (366)
Q Consensus       325 l~~n~~~  331 (366)
                      +++|.+.
T Consensus       303 L~~N~l~  309 (477)
T 2id5_A          303 VSGNQLT  309 (477)
T ss_dssp             CCSSCCS
T ss_pred             CCCCcCc
Confidence            9999875

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.92  E-value=1e-23  Score=201.06  Aligned_cols=117  Identities=18%  Similarity=0.345  Sum_probs=93.8

Q ss_pred             CccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCC
Q 038551           13 KENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRS   92 (366)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~   92 (366)
                      ..+.+.+.++++..+|.+..+++|+.|++++|.++.++....+++|++|++++|.+..+++  +..+++|++|++++| .
T Consensus        47 ~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~  123 (466)
T 1o6v_A           47 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-Q  123 (466)
T ss_dssp             TCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-C
T ss_pred             cccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC-C
Confidence            4567788888888888888899999999999998887767888999999999998888776  788999999999998 6


Q ss_pred             CCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEc
Q 038551           93 LENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNL  134 (366)
Q Consensus        93 ~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l  134 (366)
                      ++.++. +.++++|++|++++|.+..++. +..+++|++|++
T Consensus       124 l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l  163 (466)
T 1o6v_A          124 ITDIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSF  163 (466)
T ss_dssp             CCCCGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEE
T ss_pred             CCCChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeec
Confidence            676665 7888999999999888776653 444444444444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.92  E-value=3.8e-24  Score=210.53  Aligned_cols=181  Identities=19%  Similarity=0.174  Sum_probs=141.2

Q ss_pred             eccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCE
Q 038551            7 STINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRV   84 (366)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~   84 (366)
                      |.|. +....+++.+.++..+|.-- .+.++.|++++|.++.+++.  ..+++|++|++++|.+..+.+..|..+++|++
T Consensus         8 C~~~-~~~~~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   85 (606)
T 3t6q_A            8 CIEK-EVNKTYNCENLGLNEIPGTL-PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDT   85 (606)
T ss_dssp             CEEE-ETTTEEECTTSCCSSCCTTS-CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             eecc-cCCceEECCCCCcccCcCCC-CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCe
Confidence            4443 34557889999999997522 25899999999999997543  89999999999999998887776999999999


Q ss_pred             EEccCCCCCCCcchhhcCCCCCcEEEccccccccc-cccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCC
Q 038551           85 LILSYNRSLENLPLGIFNLVSLQHLDISWTGITTL-PIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECG  163 (366)
Q Consensus        85 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  163 (366)
                      |++++|......|..++++++|++|++++|.++.+ +..+..+++|++|++++| .+..++...+..+++|++|++.+|.
T Consensus        86 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~  164 (606)
T 3t6q_A           86 LVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNA  164 (606)
T ss_dssp             EECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSC
T ss_pred             eeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCc
Confidence            99999944445577889999999999999999887 456899999999999995 5555432225568999999999998


Q ss_pred             ccccccccccccCCchhhhhhhhcCcccc--eeeeccccchh
Q 038551          164 FNVELEADSILFGDSEVLVEELLVLKHLN--LLTITLQSFGA  203 (366)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~  203 (366)
                      +..             ..+..+..+++|+  .|++++|.+.+
T Consensus       165 l~~-------------~~~~~~~~l~~L~~l~L~l~~n~l~~  193 (606)
T 3t6q_A          165 IHY-------------LSKEDMSSLQQATNLSLNLNGNDIAG  193 (606)
T ss_dssp             CCE-------------ECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred             ccc-------------cChhhhhhhcccceeEEecCCCccCc
Confidence            875             4455566666666  66777666554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.92  E-value=2.4e-24  Score=211.94  Aligned_cols=157  Identities=22%  Similarity=0.192  Sum_probs=126.6

Q ss_pred             eccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCE
Q 038551            7 STINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRV   84 (366)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~   84 (366)
                      |.|. .....+.+.+.++..+|.-. .++++.|++++|.++.++..  .++++|++|++++|.+..+++..|..+++|++
T Consensus         7 c~~~-~~~~~~~c~~~~l~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~   84 (606)
T 3vq2_A            7 CIEV-VPNITYQCMDQKLSKVPDDI-PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSN   84 (606)
T ss_dssp             CEEE-ETTTEEECTTSCCSSCCTTS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             ceec-CCCCceEccCCCcccCCCCC-CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCE
Confidence            5542 34457889999999997532 27899999999999987663  78999999999999998887777889999999


Q ss_pred             EEccCCCCCCCcchhhcCCCCCcEEEcccccccccc-ccccCCCCCCEEEcccccccC-ccChhhhcCCcCCcEEEeecC
Q 038551           85 LILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLP-IELKYLVNLKCLNLEYTFRLS-RIPQQVISDLKMLRALRMFEC  162 (366)
Q Consensus        85 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~  162 (366)
                      |++++|...+..|..++++++|++|++++|.++.++ ..++.+++|++|++++|...+ .+|.. +.++++|++|++.+|
T Consensus        85 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n  163 (606)
T 3vq2_A           85 LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYN  163 (606)
T ss_dssp             EECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSS
T ss_pred             eECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCC
Confidence            999999433344778899999999999999988776 458899999999999864443 45665 888999999999988


Q ss_pred             Cccc
Q 038551          163 GFNV  166 (366)
Q Consensus       163 ~~~~  166 (366)
                      .+.+
T Consensus       164 ~l~~  167 (606)
T 3vq2_A          164 YIQT  167 (606)
T ss_dssp             CCCE
T ss_pred             ccee
Confidence            7765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=9.7e-24  Score=207.20  Aligned_cols=277  Identities=16%  Similarity=0.182  Sum_probs=159.2

Q ss_pred             CCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcEE
Q 038551           33 WKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIFNLVSLQHL  109 (366)
Q Consensus        33 ~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L  109 (366)
                      +.+++.+++.++.+..+|..  ..+++|++|++++|.+..+++..|..+++|++|++++| .++.+| ..++++++|++|
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEE
Confidence            45667777777777776654  56677777777777776666655677777777777777 344333 445677777777


Q ss_pred             Ecccccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCC----chhhhhh
Q 038551          110 DISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGD----SEVLVEE  184 (366)
Q Consensus       110 ~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~~~~~~~  184 (366)
                      ++++|.++.+|.. ++.+++|++|++++| .+..++...+.++++|++|++.+|.+.... +.......    ....+..
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBCC-GGGCTTCSEEECCSSCCSE
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCcC-hhhhhhhhhhhcccCcccc
Confidence            7777777766655 467777777777774 344444433667777777777777665410 00000000    0000001


Q ss_pred             hhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccccc
Q 038551          185 LLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELK  264 (366)
Q Consensus       185 l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~  264 (366)
                      +.....|+.|++++|.+..++...    ..  .+..|++.++.-...   ..+..+++|++|++++|.++.+....+   
T Consensus       207 l~~~~~L~~L~ls~n~l~~~~~~~----~~--~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~---  274 (597)
T 3oja_B          207 LAIPIAVEELDASHNSINVVRGPV----NV--ELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPF---  274 (597)
T ss_dssp             EECCTTCSEEECCSSCCCEEECSC----CS--CCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGG---
T ss_pred             ccCCchhheeeccCCccccccccc----CC--CCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCCCHHHh---
Confidence            112233444444444443322110    01  234444444332222   235666777777777776666543332   


Q ss_pred             cccccCCCCCcceeeee-------------cccceeEEeeccCc------cccccccccceEEeecCc-----ccCCccc
Q 038551          265 RIREICGFHSLQKVFYK-------------ILKIEARDMACTCS------QYQACPRGLTKFEEHPLK-----RLECAEL  320 (366)
Q Consensus       265 ~~~~~~~~~~L~~L~l~-------------l~~l~~L~l~~~c~------~l~~~~~~L~~L~l~~~~-----~~~~~~L  320 (366)
                           ..+++|+.|+++             +++++.|+++ +|.      .+..+|+ |+.|+|++|+     +..++.|
T Consensus       275 -----~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls-~N~l~~i~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~L  347 (597)
T 3oja_B          275 -----VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS-HNHLLHVERNQPQFDR-LENLYLDHNSIVTLKLSTHHTL  347 (597)
T ss_dssp             -----TTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECC-SSCCCCCGGGHHHHTT-CSEEECCSSCCCCCCCCTTCCC
T ss_pred             -----cCccCCCEEECCCCCCCCCCcccccCCCCcEEECC-CCCCCccCcccccCCC-CCEEECCCCCCCCcChhhcCCC
Confidence                 445666666665             3444566666 552      1222677 9999999888     6778899


Q ss_pred             ccccCCCCCCC
Q 038551          321 KELPLDCNHGL  331 (366)
Q Consensus       321 ~~L~l~~n~~~  331 (366)
                      +.|++++|++.
T Consensus       348 ~~L~l~~N~~~  358 (597)
T 3oja_B          348 KNLTLSHNDWD  358 (597)
T ss_dssp             SEEECCSSCEE
T ss_pred             CEEEeeCCCCC
Confidence            99999999874

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.92  E-value=6.5e-25  Score=216.91  Aligned_cols=159  Identities=16%  Similarity=0.261  Sum_probs=129.3

Q ss_pred             eeeccCc-CCccEEEecCCCcccC--CCCCCCCcccEEEcccCCc-----------------------------------
Q 038551            5 IASTINK-EKENFLVLAGVGLTEA--PSIGMWKETTRMSLMQNAI-----------------------------------   46 (366)
Q Consensus         5 ~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~-----------------------------------   46 (366)
                      .++.|.. .....+++.++++.+.  +.++++++|+.|++++|.+                                   
T Consensus        73 ~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~  152 (636)
T 4eco_A           73 PGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDY  152 (636)
T ss_dssp             TTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCC
T ss_pred             CCeEEcCCCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhcc
Confidence            5555543 4677778888888755  6799999999999988843                                   


Q ss_pred             -------------------------------------------cccCCC-CCCCCccEEEccCCCCcc------------
Q 038551           47 -------------------------------------------QNLTEI-PTCPRLRTLFLPSNHLGT------------   70 (366)
Q Consensus        47 -------------------------------------------~~l~~~-~~~~~L~~L~l~~~~~~~------------   70 (366)
                                                                 +++|.. ..+++|++|++++|.+..            
T Consensus       153 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~  232 (636)
T 4eco_A          153 DPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS  232 (636)
T ss_dssp             CGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTS
T ss_pred             CchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCcccccccccccccccc
Confidence                                                       235544 678899999999999877            


Q ss_pred             ------ccchhhc--CCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccccc-cc--cccccccCC------CCCCEEE
Q 038551           71 ------VSNNFFH--SMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTG-IT--TLPIELKYL------VNLKCLN  133 (366)
Q Consensus        71 ------i~~~~~~--~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~-~~--~l~~~l~~l------~~L~~L~  133 (366)
                            +|+. ++  .+++|++|++++|...+.+|..++++++|++|++++|. ++  .+|..++.+      ++|++|+
T Consensus       233 ~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~  311 (636)
T 4eco_A          233 EYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY  311 (636)
T ss_dssp             HHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEE
T ss_pred             chhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEE
Confidence                  7877 67  89999999999997788889889999999999999997 77  488777765      8999999


Q ss_pred             cccccccCccCh--hhhcCCcCCcEEEeecCCccc
Q 038551          134 LEYTFRLSRIPQ--QVISDLKMLRALRMFECGFNV  166 (366)
Q Consensus       134 l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~  166 (366)
                      +++| .+..+|.  . +.++++|++|++.+|.+.+
T Consensus       312 L~~n-~l~~ip~~~~-l~~l~~L~~L~L~~N~l~g  344 (636)
T 4eco_A          312 IGYN-NLKTFPVETS-LQKMKKLGMLECLYNQLEG  344 (636)
T ss_dssp             CCSS-CCSSCCCHHH-HTTCTTCCEEECCSCCCEE
T ss_pred             CCCC-cCCccCchhh-hccCCCCCEEeCcCCcCcc
Confidence            9985 4558887  5 8899999999999998874

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=1.1e-23  Score=199.96  Aligned_cols=270  Identities=18%  Similarity=0.151  Sum_probs=192.5

Q ss_pred             CCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCC
Q 038551           12 EKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR   91 (366)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~   91 (366)
                      ...+.+++.++.+.++|.++.+++|++|++++|.++.++ ...+++|++|++++|.+..++   ++.+++|++|++++| 
T Consensus        42 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N-  116 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTN-  116 (457)
T ss_dssp             TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSS-
T ss_pred             CCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCC-
Confidence            456788899999999998999999999999999999885 578899999999999998875   778999999999999 


Q ss_pred             CCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcccccccc
Q 038551           92 SLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEAD  171 (366)
Q Consensus        92 ~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  171 (366)
                      .++.+|  ++.+++|++|++++|.++.++  ++.+++|++|++++|..++.++   +..+++|++|++.+|.+.+     
T Consensus       117 ~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~-----  184 (457)
T 3bz5_A          117 KLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE-----  184 (457)
T ss_dssp             CCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC-----
T ss_pred             cCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce-----
Confidence            666675  788999999999999998875  7889999999999976777763   6688889999999998874     


Q ss_pred             ccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccC
Q 038551          172 SILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFN  251 (366)
Q Consensus       172 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  251 (366)
                               .+  +..+++|+.|++++|.+..++    +..+++  +..|+++.+. ++..+   +..+++|+.|++++|
T Consensus       185 ---------l~--l~~l~~L~~L~l~~N~l~~~~----l~~l~~--L~~L~Ls~N~-l~~ip---~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          185 ---------LD--VSQNKLLNRLNCDTNNITKLD----LNQNIQ--LTFLDCSSNK-LTEID---VTPLTQLTYFDCSVN  243 (457)
T ss_dssp             ---------CC--CTTCTTCCEEECCSSCCSCCC----CTTCTT--CSEEECCSSC-CSCCC---CTTCTTCSEEECCSS
T ss_pred             ---------ec--cccCCCCCEEECcCCcCCeec----cccCCC--CCEEECcCCc-ccccC---ccccCCCCEEEeeCC
Confidence                     11  556677777777777666552    233333  3334444322 12222   456667777777777


Q ss_pred             ccceEeccccccccccccCCCCCcceeeee----------------------cccceeEEeeccCccc------------
Q 038551          252 DLEELKIDAGELKRIREICGFHSLQKVFYK----------------------ILKIEARDMACTCSQY------------  297 (366)
Q Consensus       252 ~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~----------------------l~~l~~L~l~~~c~~l------------  297 (366)
                      .++.++.           ..+++|+.|+++                      ++.++.|+++ +|..+            
T Consensus       244 ~l~~~~~-----------~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls-~n~~l~~l~~~~~~L~~  311 (457)
T 3bz5_A          244 PLTELDV-----------STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVT-HNTQLYLLDCQAAGITE  311 (457)
T ss_dssp             CCSCCCC-----------TTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCT-TCTTCCEEECTTCCCSC
T ss_pred             cCCCcCH-----------HHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECC-CCcccceeccCCCcceE
Confidence            6665442           223333333322                      1222333333 33211            


Q ss_pred             ---cccccccceEEeecCc-----ccCCcccccccCCCCCCCC
Q 038551          298 ---QACPRGLTKFEEHPLK-----RLECAELKELPLDCNHGLE  332 (366)
Q Consensus       298 ---~~~~~~L~~L~l~~~~-----~~~~~~L~~L~l~~n~~~~  332 (366)
                         ...|+ |++|++++|.     +..|++|+.|++++|++.+
T Consensus       312 L~l~~~~~-L~~L~L~~N~l~~l~l~~l~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          312 LDLSQNPK-LVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQD  353 (457)
T ss_dssp             CCCTTCTT-CCEEECTTCCCSCCCCTTCTTCSEEECCSSCCCB
T ss_pred             echhhccc-CCEEECCCCcccccccccCCcCcEEECCCCCCCC
Confidence               11355 8888888777     6788888889998888764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=2.3e-24  Score=198.13  Aligned_cols=183  Identities=22%  Similarity=0.289  Sum_probs=154.9

Q ss_pred             cCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEE
Q 038551            9 INKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLI   86 (366)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~   86 (366)
                      |.......+++.++++..+|.- -.++|+.|++++|.++.++..  ..+++|++|++++|.+..+++..+..+++|++|+
T Consensus        28 ~~C~~~~~c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           28 LSCDRNGICKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             CEECTTSEEECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCCeEeeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            3344555688889999999752 236999999999999998763  8899999999999999988777799999999999


Q ss_pred             ccCCCCCCCcchh-hcCCCCCcEEEccccccccccc--cccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCC
Q 038551           87 LSYNRSLENLPLG-IFNLVSLQHLDISWTGITTLPI--ELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECG  163 (366)
Q Consensus        87 l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~l~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  163 (366)
                      +++| .++.+|.. ++++++|++|++++|.++.+|.  .+..+++|++|++++|+.++.++...+.++++|++|++.+|.
T Consensus       107 Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          107 LSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             CCSS-CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             CCCC-cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            9999 66777755 8899999999999999998887  588999999999999767777766558899999999999999


Q ss_pred             ccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHh
Q 038551          164 FNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQR  206 (366)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  206 (366)
                      +.+             ..+..+..+++|+.|++++|.+..++.
T Consensus       186 l~~-------------~~~~~l~~l~~L~~L~l~~n~l~~~~~  215 (353)
T 2z80_A          186 LQS-------------YEPKSLKSIQNVSHLILHMKQHILLLE  215 (353)
T ss_dssp             CCE-------------ECTTTTTTCSEEEEEEEECSCSTTHHH
T ss_pred             cCc-------------cCHHHHhccccCCeecCCCCccccchh
Confidence            886             556778889999999999888766543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.91  E-value=1.6e-23  Score=203.57  Aligned_cols=149  Identities=24%  Similarity=0.216  Sum_probs=125.7

Q ss_pred             EEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCC
Q 038551           16 FLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSL   93 (366)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~   93 (366)
                      .+++.++++..+|... .++|+.|++++|.++.+++.  ..+++|++|++++|.+..+++..|..+++|++|++++| .+
T Consensus         9 ~c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l   86 (549)
T 2z81_A            9 VCDGRSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HL   86 (549)
T ss_dssp             EEECTTSCCSSCCSCC-CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CC
T ss_pred             eEECCCCccccccccC-CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-cc
Confidence            4677888899987532 38999999999999987543  88999999999999998888777899999999999999 55


Q ss_pred             CCcc-hhhcCCCCCcEEEcccccccc--ccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccc
Q 038551           94 ENLP-LGIFNLVSLQHLDISWTGITT--LPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV  166 (366)
Q Consensus        94 ~~l~-~~~~~l~~L~~L~l~~~~~~~--l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  166 (366)
                      +.++ ..++++++|++|++++|.++.  +|..++.+++|++|++++|..++.++...+.++++|++|++.+|.+.+
T Consensus        87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  162 (549)
T 2z81_A           87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN  162 (549)
T ss_dssp             CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence            5555 458999999999999999884  466789999999999999766788876558899999999999998876

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.91  E-value=6e-25  Score=217.15  Aligned_cols=291  Identities=13%  Similarity=0.139  Sum_probs=168.2

Q ss_pred             CCcccCC-CCCCCCcccEEEcccCCccc------------------cCCC-C--CCCCccEEEccCCCC-ccccchhhcC
Q 038551           22 VGLTEAP-SIGMWKETTRMSLMQNAIQN------------------LTEI-P--TCPRLRTLFLPSNHL-GTVSNNFFHS   78 (366)
Q Consensus        22 ~~~~~~~-~~~~~~~L~~L~l~~~~~~~------------------l~~~-~--~~~~L~~L~l~~~~~-~~i~~~~~~~   78 (366)
                      +.+..+| .++++++|+.|++++|.++.                  +|.. .  .+++|++|++++|.+ +.+|.. +..
T Consensus       193 n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~  271 (636)
T 4eco_A          193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKA  271 (636)
T ss_dssp             CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTT
T ss_pred             CCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-Hhc
Confidence            3444554 36677777777777777777                  6666 5  677777777777765 345544 677


Q ss_pred             CCCCCEEEccCCCCCC--CcchhhcCC------CCCcEEEccccccccccc--cccCCCCCCEEEcccccccCccChhhh
Q 038551           79 MASLRVLILSYNRSLE--NLPLGIFNL------VSLQHLDISWTGITTLPI--ELKYLVNLKCLNLEYTFRLSRIPQQVI  148 (366)
Q Consensus        79 l~~L~~L~l~~~~~~~--~l~~~~~~l------~~L~~L~l~~~~~~~l~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~  148 (366)
                      +++|++|++++|..++  .+|..++++      ++|++|++++|.++.+|.  .++.+++|++|++++|...+.+| . +
T Consensus       272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~  349 (636)
T 4eco_A          272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-F  349 (636)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-C
T ss_pred             CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-h
Confidence            7777777777774133  466666655      777777777777777776  67777777777777754444666 3 6


Q ss_pred             cCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcc-cceeeeccccchhhHhHhhhcccCcc-----------
Q 038551          149 SDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKH-LNLLTITLQSFGALQRLLSYCRLGSI-----------  216 (366)
Q Consensus       149 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~l~~~~~l~~l-----------  216 (366)
                      ..+++|++|++.+|.+.              ..+..+..+++ |+.|++++|.+..++.......+.+|           
T Consensus       350 ~~l~~L~~L~L~~N~l~--------------~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~  415 (636)
T 4eco_A          350 GSEIKLASLNLAYNQIT--------------EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG  415 (636)
T ss_dssp             EEEEEESEEECCSSEEE--------------ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred             CCCCCCCEEECCCCccc--------------cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCC
Confidence            66677777777777655              22333444444 55555555444433321111111111           


Q ss_pred             ------------------cceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccccccccccCCCCCccee
Q 038551          217 ------------------STQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKV  278 (366)
Q Consensus       217 ------------------~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L  278 (366)
                                        .++.|+++.+.- ...+...+..+++|++|++++|.++.++......... ....+++|+.|
T Consensus       416 ~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l-~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~-~~~~l~~L~~L  493 (636)
T 4eco_A          416 SVDGKNFDPLDPTPFKGINVSSINLSNNQI-SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE-NFKNTYLLTSI  493 (636)
T ss_dssp             TTTTCSSCTTCSSCCCCCCEEEEECCSSCC-CSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTE-ECTTGGGCCEE
T ss_pred             CcchhhhcccccccccCCCCCEEECcCCcc-CcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccc-cccccCCccEE
Confidence                              234444444321 2222222445677777777777776665433210000 00122367777


Q ss_pred             eee---------------cccceeEEeeccCc------cccccccccceEEeec------Cc--------ccCCcccccc
Q 038551          279 FYK---------------ILKIEARDMACTCS------QYQACPRGLTKFEEHP------LK--------RLECAELKEL  323 (366)
Q Consensus       279 ~l~---------------l~~l~~L~l~~~c~------~l~~~~~~L~~L~l~~------~~--------~~~~~~L~~L  323 (366)
                      +++               +++++.|+++ ++.      .+..+++ |++|++++      |.        +..+++|+.|
T Consensus       494 ~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls-~N~l~~ip~~~~~l~~-L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L  571 (636)
T 4eco_A          494 DLRFNKLTKLSDDFRATTLPYLVGIDLS-YNSFSKFPTQPLNSST-LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL  571 (636)
T ss_dssp             ECCSSCCCBCCGGGSTTTCTTCCEEECC-SSCCSSCCCGGGGCSS-CCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred             ECcCCcCCccChhhhhccCCCcCEEECC-CCCCCCcChhhhcCCC-CCEEECCCCcccccCcccccChHHHhcCCCCCEE
Confidence            765               2334666666 552      1222566 88888844      32        5667888888


Q ss_pred             cCCCCCCCCce
Q 038551          324 PLDCNHGLEQK  334 (366)
Q Consensus       324 ~l~~n~~~~~~  334 (366)
                      ++++|.+ +.+
T Consensus       572 ~Ls~N~l-~~i  581 (636)
T 4eco_A          572 QIGSNDI-RKV  581 (636)
T ss_dssp             ECCSSCC-CBC
T ss_pred             ECCCCcC-Ccc
Confidence            8888887 443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.91  E-value=1.5e-23  Score=211.52  Aligned_cols=132  Identities=21%  Similarity=0.208  Sum_probs=67.5

Q ss_pred             CCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEE
Q 038551           31 GMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLD  110 (366)
Q Consensus        31 ~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~  110 (366)
                      .++++|+.|++++|.+....+...+++|++|++++|.+....+. ++.+++|++|++++|...+.+|..++++++|++|+
T Consensus       175 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  253 (768)
T 3rgz_A          175 DGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN  253 (768)
T ss_dssp             TCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEE
T ss_pred             ccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEE
Confidence            34444444444444444322224556666666666666543333 56666666666666644445555566666666666


Q ss_pred             ccccccc-cccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcc
Q 038551          111 ISWTGIT-TLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFN  165 (366)
Q Consensus       111 l~~~~~~-~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  165 (366)
                      +++|.+. .+|..  .+++|++|++++|...+.+|..+...+++|++|++.+|.+.
T Consensus       254 Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~  307 (768)
T 3rgz_A          254 ISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY  307 (768)
T ss_dssp             CCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEE
T ss_pred             CCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCC
Confidence            6666554 22221  44555555555543333444431122355555555555544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.91  E-value=4.4e-23  Score=196.61  Aligned_cols=292  Identities=18%  Similarity=0.201  Sum_probs=164.5

Q ss_pred             CCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCC
Q 038551           12 EKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR   91 (366)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~   91 (366)
                      ...+.+++.++.+.+++.+.++++|+.|++++|.+..++....+++|++|++++|.+..+++  +..+++|++|++++| 
T Consensus        68 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n-  144 (466)
T 1o6v_A           68 NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN-  144 (466)
T ss_dssp             TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEE-
T ss_pred             cCCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCC-
Confidence            45678888888888886689999999999999999887767888999999999998888775  788999999999988 


Q ss_pred             CCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcccccccc
Q 038551           92 SLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEAD  171 (366)
Q Consensus        92 ~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  171 (366)
                      .+..++. +..+++|++|++. +.+..++. +..+++|++|++++| .+..++.  +..+++|++|++.+|.+.+...+.
T Consensus       145 ~l~~~~~-~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~  218 (466)
T 1o6v_A          145 TISDISA-LSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSN-KVSDISV--LAKLTNLESLIATNNQISDITPLG  218 (466)
T ss_dssp             EECCCGG-GTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCCCGGGG
T ss_pred             ccCCChh-hccCCcccEeecC-CcccCchh-hccCCCCCEEECcCC-cCCCChh--hccCCCCCEEEecCCccccccccc
Confidence            5555543 5555555555553 22222222 445555555555552 2333322  444455555555555444310000


Q ss_pred             cccc-------CCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCc
Q 038551          172 SILF-------GDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLR  244 (366)
Q Consensus       172 ~~~~-------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~  244 (366)
                      ....       ...-.....+..+++|+.|++++|.+..++.+..+.   +  ++.|++.++.-....   .+..+++|+
T Consensus       219 ~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~---~--L~~L~l~~n~l~~~~---~~~~l~~L~  290 (466)
T 1o6v_A          219 ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLT---K--LTELKLGANQISNIS---PLAGLTALT  290 (466)
T ss_dssp             GCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCT---T--CSEEECCSSCCCCCG---GGTTCTTCS
T ss_pred             ccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCC---C--CCEEECCCCccCccc---cccCCCccC
Confidence            0000       000000123444555555555555554443322222   2  222333332211111   144555666


Q ss_pred             EEEeccCccceEeccccccccccccCCCCCcceeeee------------cccceeEEeeccCc-----cccccccccceE
Q 038551          245 TLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYK------------ILKIEARDMACTCS-----QYQACPRGLTKF  307 (366)
Q Consensus       245 ~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~------------l~~l~~L~l~~~c~-----~l~~~~~~L~~L  307 (366)
                      +|++++|.++.++.          ...+++|+.|+++            ++.++.|+++ +|.     .+..+++ |+.|
T Consensus       291 ~L~L~~n~l~~~~~----------~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~-~n~l~~~~~l~~l~~-L~~L  358 (466)
T 1o6v_A          291 NLELNENQLEDISP----------ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY-NNKVSDVSSLANLTN-INWL  358 (466)
T ss_dssp             EEECCSSCCSCCGG----------GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECC-SSCCCCCGGGTTCTT-CCEE
T ss_pred             eEEcCCCcccCchh----------hcCCCCCCEEECcCCcCCCchhhccCccCCEeECC-CCccCCchhhccCCC-CCEE
Confidence            66666655544322          1445666666665            3344555555 552     1222566 7777


Q ss_pred             EeecCc------ccCCcccccccCCCCCCCC
Q 038551          308 EEHPLK------RLECAELKELPLDCNHGLE  332 (366)
Q Consensus       308 ~l~~~~------~~~~~~L~~L~l~~n~~~~  332 (366)
                      ++++|+      +..+++|+.|++++|.+.+
T Consensus       359 ~l~~n~l~~~~~~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          359 SAGHNQISDLTPLANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             ECCSSCCCBCGGGTTCTTCCEEECCCEEEEC
T ss_pred             eCCCCccCccchhhcCCCCCEEeccCCcccC
Confidence            777776      5667777777777776543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.91  E-value=1.1e-23  Score=212.52  Aligned_cols=175  Identities=19%  Similarity=0.259  Sum_probs=118.5

Q ss_pred             CCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCC-CCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCC
Q 038551           12 EKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTE-IPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYN   90 (366)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~   90 (366)
                      ...+.+++.++.+.+...+..+++|+.|++++|.+....+ ...+++|++|++++|.+....+..+..+++|++|++++|
T Consensus       178 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n  257 (768)
T 3rgz_A          178 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN  257 (768)
T ss_dssp             TTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSS
T ss_pred             CCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCC
Confidence            3556677777777766556788899999999998887443 478889999999998886444444888888888888888


Q ss_pred             CCCCCcchhhcCCCCCcEEEccccccc-cccccccCC-CCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccc
Q 038551           91 RSLENLPLGIFNLVSLQHLDISWTGIT-TLPIELKYL-VNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVEL  168 (366)
Q Consensus        91 ~~~~~l~~~~~~l~~L~~L~l~~~~~~-~l~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  168 (366)
                      ...+.+|..  .+++|++|++++|.++ .+|..+... ++|++|++++|...+.+|.. +.++++|++|++.+|.+.+  
T Consensus       258 ~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~--  332 (768)
T 3rgz_A          258 QFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSG--  332 (768)
T ss_dssp             CCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEE--
T ss_pred             cccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccC--
Confidence            544445542  6677777777777766 666665543 77777777775555555554 6677777777777776653  


Q ss_pred             cccccccCCchhhh-hhhhcCcccceeeeccccch
Q 038551          169 EADSILFGDSEVLV-EELLVLKHLNLLTITLQSFG  202 (366)
Q Consensus       169 ~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~  202 (366)
                                 ..+ ..+..+++|+.|++++|.+.
T Consensus       333 -----------~ip~~~l~~l~~L~~L~Ls~n~l~  356 (768)
T 3rgz_A          333 -----------ELPMDTLLKMRGLKVLDLSFNEFS  356 (768)
T ss_dssp             -----------ECCHHHHTTCTTCCEEECCSSEEE
T ss_pred             -----------cCCHHHHhcCCCCCEEeCcCCccC
Confidence                       222 22455555666666555543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.91  E-value=5.6e-23  Score=204.89  Aligned_cols=173  Identities=19%  Similarity=0.173  Sum_probs=134.9

Q ss_pred             cEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCC
Q 038551           15 NFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRS   92 (366)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~   92 (366)
                      ..+++.+.++..+|.... +++++|++++|.++.++..  ..+++|++|++++|.+..+++..+..+++|++|++++| .
T Consensus         7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~   84 (680)
T 1ziw_A            7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-E   84 (680)
T ss_dssp             SEEECCSSCCSSCCSCSC-TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-C
T ss_pred             CeeECCCCCccccccccC-CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-c
Confidence            578888889998875332 7899999999999987754  78899999999999998887777889999999999999 6


Q ss_pred             CCCcch-hhcCCCCCcEEEccccccccccc-cccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccc
Q 038551           93 LENLPL-GIFNLVSLQHLDISWTGITTLPI-ELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEA  170 (366)
Q Consensus        93 ~~~l~~-~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  170 (366)
                      ++.+|. .+.++++|++|++++|.++.++. .++.+++|++|++++|...+..+. .+.++++|++|++.+|.+.+    
T Consensus        85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~----  159 (680)
T 1ziw_A           85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQA----  159 (680)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCC----
T ss_pred             cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEccCCcccc----
Confidence            677775 58899999999999999887764 588999999999999644444343 37889999999999998875    


Q ss_pred             cccccCCchhhhhhh--hcCcccceeeeccccchh
Q 038551          171 DSILFGDSEVLVEEL--LVLKHLNLLTITLQSFGA  203 (366)
Q Consensus       171 ~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~  203 (366)
                               .....+  ..+++|+.|++++|.+..
T Consensus       160 ---------~~~~~~~~~~~~~L~~L~L~~n~l~~  185 (680)
T 1ziw_A          160 ---------LKSEELDIFANSSLKKLELSSNQIKE  185 (680)
T ss_dssp             ---------BCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred             ---------cCHHHhhccccccccEEECCCCcccc
Confidence                     222222  234666667766665543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.91  E-value=7.3e-23  Score=201.37  Aligned_cols=126  Identities=23%  Similarity=0.313  Sum_probs=100.9

Q ss_pred             CCccEEEecCCCcccCC--CCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEc
Q 038551           12 EKENFLVLAGVGLTEAP--SIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLIL   87 (366)
Q Consensus        12 ~~~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l   87 (366)
                      ...+.+++.++.+..++  .+.++++|++|++++|.++.+++.  ..+++|++|++++|.+..+++..|..+++|++|++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            45677888888888883  588889999999999988887543  78889999999999888876555888899999999


Q ss_pred             cCCCCCCCcc-hhhcCCCCCcEEEccccccc--cccccccCCCCCCEEEccccc
Q 038551           88 SYNRSLENLP-LGIFNLVSLQHLDISWTGIT--TLPIELKYLVNLKCLNLEYTF  138 (366)
Q Consensus        88 ~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~--~l~~~l~~l~~L~~L~l~~~~  138 (366)
                      ++| .+..++ ..++++++|++|++++|.++  .+|..++++++|++|++++|.
T Consensus       112 ~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~  164 (606)
T 3vq2_A          112 VET-KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY  164 (606)
T ss_dssp             TTS-CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred             cCC-ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence            988 455444 56788888888888888877  467778888888888888753

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.90  E-value=8.5e-23  Score=200.90  Aligned_cols=78  Identities=23%  Similarity=0.249  Sum_probs=39.9

Q ss_pred             CccEEEecCCCcccC--CCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEcc
Q 038551           13 KENFLVLAGVGLTEA--PSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILS   88 (366)
Q Consensus        13 ~~~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~   88 (366)
                      ..+.+++.++.+..+  ..++++++|++|++++|.++.++..  ..+++|++|++++|.+..++...+..+++|++|+++
T Consensus        82 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  161 (606)
T 3t6q_A           82 RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ  161 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECC
T ss_pred             ccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcc
Confidence            445555555555554  2355566666666666655554222  455555555555555544321113335555555555


Q ss_pred             CC
Q 038551           89 YN   90 (366)
Q Consensus        89 ~~   90 (366)
                      +|
T Consensus       162 ~n  163 (606)
T 3t6q_A          162 NN  163 (606)
T ss_dssp             SS
T ss_pred             cC
Confidence            55

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.90  E-value=9.3e-23  Score=199.05  Aligned_cols=151  Identities=23%  Similarity=0.255  Sum_probs=123.3

Q ss_pred             CccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCC
Q 038551           13 KENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYN   90 (366)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~   90 (366)
                      ....+.|.+.++..+|.-. .+.++.|++++|.++.++..  ..+++|++|++++|.+..+++..|..+++|++|++++|
T Consensus         8 ~~~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n   86 (570)
T 2z63_A            8 PNITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN   86 (570)
T ss_dssp             TTTEEECCSSCCSSCCSSS-CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             CCcEEEeCCCCccccCCCc-cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence            3456788888888887522 36799999999999987654  78999999999999998888777889999999999999


Q ss_pred             CCCCCcc-hhhcCCCCCcEEEccccccccccc-cccCCCCCCEEEcccccccC-ccChhhhcCCcCCcEEEeecCCccc
Q 038551           91 RSLENLP-LGIFNLVSLQHLDISWTGITTLPI-ELKYLVNLKCLNLEYTFRLS-RIPQQVISDLKMLRALRMFECGFNV  166 (366)
Q Consensus        91 ~~~~~l~-~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~  166 (366)
                       .++.++ ..++++++|++|++++|.++.++. .++.+++|++|++++|.... .+|.. +.++++|++|++.+|.+..
T Consensus        87 -~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~  163 (570)
T 2z63_A           87 -PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQS  163 (570)
T ss_dssp             -CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCE
T ss_pred             -cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccce
Confidence             555554 678899999999999999988776 48899999999999854433 35665 8889999999999998875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.90  E-value=9.7e-23  Score=189.78  Aligned_cols=278  Identities=16%  Similarity=0.198  Sum_probs=203.8

Q ss_pred             CCccEEEecCCCcccCCC--CCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEc
Q 038551           12 EKENFLVLAGVGLTEAPS--IGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLIL   87 (366)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l   87 (366)
                      ...+.+.+.++.+..+|.  +.++++|+.|++++|.++.++..  ..+++|++|++++|.+..+++..+..+++|++|++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            455667777888888865  67899999999999999997653  88999999999999999988877899999999999


Q ss_pred             cCCCCCCCcchh-hcCCCCCcEEEccccccccccc-cccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcc
Q 038551           88 SYNRSLENLPLG-IFNLVSLQHLDISWTGITTLPI-ELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFN  165 (366)
Q Consensus        88 ~~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  165 (366)
                      ++| .++.+|.. +.++++|++|++++|.++.++. .+..+++|++|++++| .+..++   +..+++|+++++.+|.+.
T Consensus       125 ~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          125 ERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             CSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred             CCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc---cccccccceeeccccccc
Confidence            999 77788765 5889999999999999987755 4899999999999994 555554   445666777766666554


Q ss_pred             cccccccc---ccC--CchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccC
Q 038551          166 VELEADSI---LFG--DSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASL  240 (366)
Q Consensus       166 ~~~~~~~~---~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~  240 (366)
                      ........   ...  .....+.  ...++|+.|++++|.+...+.+..+++     ++.|+++++. +.......+..+
T Consensus       200 ~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~~~l~~l~~-----L~~L~Ls~n~-l~~~~~~~~~~l  271 (390)
T 3o6n_A          200 TLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLLNYPG-----LVEVDLSYNE-LEKIMYHPFVKM  271 (390)
T ss_dssp             EEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCCCGGGGGCTT-----CSEEECCSSC-CCEEESGGGTTC
T ss_pred             ccCCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCcccHHHcCCCC-----ccEEECCCCc-CCCcChhHcccc
Confidence            31100000   000  0000111  224689999999998887765544444     4446665542 222222447889


Q ss_pred             CcCcEEEeccCccceEeccccccccccccCCCCCcceeeee-------------cccceeEEeeccCcc----ccccccc
Q 038551          241 RHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYK-------------ILKIEARDMACTCSQ----YQACPRG  303 (366)
Q Consensus       241 ~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~-------------l~~l~~L~l~~~c~~----l~~~~~~  303 (366)
                      ++|++|++++|.++.++...         ..+++|+.|+++             ++.++.|+++ ++.-    +..+++ 
T Consensus       272 ~~L~~L~L~~n~l~~~~~~~---------~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~-~N~i~~~~~~~~~~-  340 (390)
T 3o6n_A          272 QRLERLYISNNRLVALNLYG---------QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLD-HNSIVTLKLSTHHT-  340 (390)
T ss_dssp             SSCCEEECCSSCCCEEECSS---------SCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECC-SSCCCCCCCCTTCC-
T ss_pred             ccCCEEECCCCcCcccCccc---------CCCCCCCEEECCCCcceecCccccccCcCCEEECC-CCccceeCchhhcc-
Confidence            99999999999998877543         457889999888             4566888888 7741    233788 


Q ss_pred             cceEEeecCc
Q 038551          304 LTKFEEHPLK  313 (366)
Q Consensus       304 L~~L~l~~~~  313 (366)
                      |++|++++|+
T Consensus       341 L~~L~l~~N~  350 (390)
T 3o6n_A          341 LKNLTLSHND  350 (390)
T ss_dssp             CSEEECCSSC
T ss_pred             CCEEEcCCCC
Confidence            9999999999

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.90  E-value=5.2e-23  Score=200.02  Aligned_cols=154  Identities=20%  Similarity=0.174  Sum_probs=119.4

Q ss_pred             CCccEEEecCCCcccC--CCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEc
Q 038551           12 EKENFLVLAGVGLTEA--PSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLIL   87 (366)
Q Consensus        12 ~~~~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l   87 (366)
                      ...+.+++.++.+.++  ..+.++++|++|++++|.+..+++.  ..+++|++|++++|.+..+++..++.+++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            3678889999999887  3689999999999999999997643  88999999999999999888887899999999999


Q ss_pred             cCCCCCC--CcchhhcCCCCCcEEEccccc-cccccc-cccCCCCCCEEEcccccccCccChh-----------------
Q 038551           88 SYNRSLE--NLPLGIFNLVSLQHLDISWTG-ITTLPI-ELKYLVNLKCLNLEYTFRLSRIPQQ-----------------  146 (366)
Q Consensus        88 ~~~~~~~--~l~~~~~~l~~L~~L~l~~~~-~~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~-----------------  146 (366)
                      ++| .++  ..|..++++++|++|++++|. +..+|. .+..+++|++|++++|...+..|..                 
T Consensus       106 s~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  184 (549)
T 2z81_A          106 MGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES  184 (549)
T ss_dssp             TTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred             CCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence            999 555  346678889999999999886 566663 5777888888888775443333322                 


Q ss_pred             ------hhcCCcCCcEEEeecCCccc
Q 038551          147 ------VISDLKMLRALRMFECGFNV  166 (366)
Q Consensus       147 ------~~~~~~~L~~L~l~~~~~~~  166 (366)
                            .+..+++|++|++.+|.+.+
T Consensus       185 ~~~~~~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          185 AFLLEIFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             TTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred             cccchhhHhhcccccEEEccCCcccc
Confidence                  11235667777777666554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.90  E-value=2.1e-22  Score=205.18  Aligned_cols=151  Identities=21%  Similarity=0.238  Sum_probs=126.2

Q ss_pred             ccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCC-CCccccchhhcCCCCCCEEEccCC
Q 038551           14 ENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSN-HLGTVSNNFFHSMASLRVLILSYN   90 (366)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~-~~~~i~~~~~~~l~~L~~L~l~~~   90 (366)
                      ...+++.++++..+|.  -.++++.|++++|.++.+.+.  ..+++|++|++++| .+..+++..|..+++|++|++++|
T Consensus         6 ~~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A            6 GRIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             TEEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred             ceEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence            3678899999999987  568999999999999986543  89999999999999 456786666999999999999999


Q ss_pred             CCCCCcchhhcCCCCCcEEEcccccccc-cccc--ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccc
Q 038551           91 RSLENLPLGIFNLVSLQHLDISWTGITT-LPIE--LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV  166 (366)
Q Consensus        91 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~-l~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  166 (366)
                      ...+..|..++++++|++|++++|.++. +|..  +..+++|++|++++|...+..+...+.++++|++|++.+|.+..
T Consensus        84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            5444558889999999999999999874 5554  89999999999999655444343348899999999999998875

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.90  E-value=1e-22  Score=193.38  Aligned_cols=284  Identities=17%  Similarity=0.181  Sum_probs=186.6

Q ss_pred             CCccEEEecCCCcccC--CCCCCCCcccEEEcccCCccc-cCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEE
Q 038551           12 EKENFLVLAGVGLTEA--PSIGMWKETTRMSLMQNAIQN-LTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLI   86 (366)
Q Consensus        12 ~~~~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~-l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~   86 (366)
                      ...+.+++.++.+.++  ..++++++|+.|++++|.+.. ++..  ..+++|++|++++|.+..+++..+..+++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            4578899999999887  468999999999999998874 5433  8899999999999999888666699999999999


Q ss_pred             ccCCCCCCCcchh--hcCCCCCcEEEccccccccc-ccc-ccCCCCCCEEEcccccccCccChhhhc-------------
Q 038551           87 LSYNRSLENLPLG--IFNLVSLQHLDISWTGITTL-PIE-LKYLVNLKCLNLEYTFRLSRIPQQVIS-------------  149 (366)
Q Consensus        87 l~~~~~~~~l~~~--~~~l~~L~~L~l~~~~~~~l-~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~-------------  149 (366)
                      +++|...+..+..  +.++++|++|++++|.++.+ |.. +..+++|++|++++|......+.. +.             
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~~~L~~L~l~  188 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED-LLNFQGKHFTLLRLS  188 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT-SGGGTTCEEEEEECT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh-hhccccccccccccc
Confidence            9999443344544  88999999999999999876 444 789999999999996544333322 32             


Q ss_pred             ---------------------CCcCCcEEEeecCCccccccccccccCCchhhhhhhh----------------------
Q 038551          150 ---------------------DLKMLRALRMFECGFNVELEADSILFGDSEVLVEELL----------------------  186 (366)
Q Consensus       150 ---------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~----------------------  186 (366)
                                           .+++|++|++.+|.+.+.             .+..+.                      
T Consensus       189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~  255 (455)
T 3v47_A          189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES-------------MAKRFFDAIAGTKIQSLILSNSYNMGSS  255 (455)
T ss_dssp             TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHH-------------HHHHHHHHTTTCCEEEEECTTCTTTSCC
T ss_pred             cCcccccchhhccccccccccccceeeeEecCCCccccc-------------chhhhhccccccceeeEeeccccccccc
Confidence                                 235688888888876541             111110                      


Q ss_pred             -----------------cCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEec
Q 038551          187 -----------------VLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLY  249 (366)
Q Consensus       187 -----------------~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~  249 (366)
                                       ..++|+.|++++|.+.....- .+..+++  ++.|+++++. +.......+..+++|++|+++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~--L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls  331 (455)
T 3v47_A          256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS-VFSHFTD--LEQLTLAQNE-INKIDDNAFWGLTHLLKLNLS  331 (455)
T ss_dssp             TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT-TTTTCTT--CCEEECTTSC-CCEECTTTTTTCTTCCEEECC
T ss_pred             cchhhhccCcccccccccccCceEEEecCccccccchh-hcccCCC--CCEEECCCCc-ccccChhHhcCcccCCEEECC
Confidence                             124566666666555432110 1222333  3334443322 111111235566666666666


Q ss_pred             cCccceEeccccccccccccCCCCCcceeeee--------------cccceeEEeeccCc-------cccccccccceEE
Q 038551          250 FNDLEELKIDAGELKRIREICGFHSLQKVFYK--------------ILKIEARDMACTCS-------QYQACPRGLTKFE  308 (366)
Q Consensus       250 ~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~--------------l~~l~~L~l~~~c~-------~l~~~~~~L~~L~  308 (366)
                      +|.++.++...+        ..+++|+.|+++              +++++.|+++ ++.       .+..+++ |++|+
T Consensus       332 ~N~l~~~~~~~~--------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~-L~~L~  401 (455)
T 3v47_A          332 QNFLGSIDSRMF--------ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD-TNQLKSVPDGIFDRLTS-LQKIW  401 (455)
T ss_dssp             SSCCCEECGGGG--------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCSCCCTTTTTTCTT-CCEEE
T ss_pred             CCccCCcChhHh--------cCcccCCEEECCCCcccccChhhccccccccEEECC-CCccccCCHhHhccCCc-ccEEE
Confidence            666665543332        345566666665              3344566666 542       1233678 99999


Q ss_pred             eecCc-ccCCcccccc
Q 038551          309 EHPLK-RLECAELKEL  323 (366)
Q Consensus       309 l~~~~-~~~~~~L~~L  323 (366)
                      +++|+ ...||.+..+
T Consensus       402 l~~N~l~~~~~~~~~l  417 (455)
T 3v47_A          402 LHTNPWDCSCPRIDYL  417 (455)
T ss_dssp             CCSSCBCCCTTTTHHH
T ss_pred             ccCCCcccCCCcchHH
Confidence            99999 5667765543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.90  E-value=1.7e-22  Score=197.07  Aligned_cols=145  Identities=26%  Similarity=0.331  Sum_probs=120.2

Q ss_pred             CCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccC
Q 038551           12 EKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSY   89 (366)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~   89 (366)
                      +..+.+++.++++..+|.-. .++++.|++++|.++.+++.  ..+++|++|++++|.+..++++.|..+++|++|++++
T Consensus        31 ~~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  109 (562)
T 3a79_B           31 ELESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH  109 (562)
T ss_dssp             --CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CCCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence            34488999999999997532 38999999999999998753  8999999999999999998777799999999999999


Q ss_pred             CCCCCCcchhhcCCCCCcEEEcccccccccc--ccccCCCCCCEEEcccccccCccChhhhcCCcCC--cEEEeecCCc
Q 038551           90 NRSLENLPLGIFNLVSLQHLDISWTGITTLP--IELKYLVNLKCLNLEYTFRLSRIPQQVISDLKML--RALRMFECGF  164 (366)
Q Consensus        90 ~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~  164 (366)
                      | .++.+|..  .+++|++|++++|.++.++  ..++.+++|++|++++| .+....   +..+++|  ++|++.+|.+
T Consensus       110 N-~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~---~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          110 N-RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLD---LLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             S-CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred             C-cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC-ccccCc---hhhhhhceeeEEEeecccc
Confidence            9 67888876  8999999999999998765  67999999999999995 444322   4444455  8888887766

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.90  E-value=2.3e-22  Score=190.79  Aligned_cols=141  Identities=18%  Similarity=0.216  Sum_probs=94.1

Q ss_pred             CCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCC
Q 038551           12 EKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR   91 (366)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~   91 (366)
                      ...+.+++.++.+.+++ ++.+++|+.|++++|.++.++ ...+++|++|++++|.+..++   +..+++|++|++++| 
T Consensus        64 ~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N-  137 (457)
T 3bz5_A           64 TGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARN-  137 (457)
T ss_dssp             TTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTS-
T ss_pred             CCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCC-
Confidence            45667777788877776 777888888888888887764 467778888888888777764   667778888888877 


Q ss_pred             CCCCcchhhcCCCCCcEEEcccc-ccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccc
Q 038551           92 SLENLPLGIFNLVSLQHLDISWT-GITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV  166 (366)
Q Consensus        92 ~~~~l~~~~~~l~~L~~L~l~~~-~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  166 (366)
                      .++.++  ++.+++|++|++++| .+..+  .+..+++|++|++++ +.++.++   +..+++|+.|++.+|.+.+
T Consensus       138 ~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~-n~l~~l~---l~~l~~L~~L~l~~N~l~~  205 (457)
T 3bz5_A          138 TLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF-NKITELD---VSQNKLLNRLNCDTNNITK  205 (457)
T ss_dssp             CCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS-SCCCCCC---CTTCTTCCEEECCSSCCSC
T ss_pred             ccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC-Cccceec---cccCCCCCEEECcCCcCCe
Confidence            455453  556666666666666 34444  245566666666666 3444443   4455566666666665553

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.90  E-value=4.8e-23  Score=201.11  Aligned_cols=152  Identities=23%  Similarity=0.240  Sum_probs=125.4

Q ss_pred             CCccEEEecCCCcccCC--CCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEc
Q 038551           12 EKENFLVLAGVGLTEAP--SIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLIL   87 (366)
Q Consensus        12 ~~~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l   87 (366)
                      ...+.+++.++.+..++  .+.++++|++|++++|.++.++..  ..+++|++|++++|.+..+++..|..+++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            35678899999998884  689999999999999999997654  78999999999999999888777999999999999


Q ss_pred             cCCCCCCCcch-hhcCCCCCcEEEcccccccc--ccccccCCCCCCEEEcccccccCccChhhhcCCcCC----cEEEee
Q 038551           88 SYNRSLENLPL-GIFNLVSLQHLDISWTGITT--LPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKML----RALRMF  160 (366)
Q Consensus        88 ~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~--l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L----~~L~l~  160 (366)
                      ++| .++.++. .++++++|++|++++|.++.  +|..+.++++|++|++++| .+..++...+..+++|    +.+++.
T Consensus       108 ~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L~l~  185 (570)
T 2z63_A          108 VET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLS  185 (570)
T ss_dssp             TTS-CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred             ccc-ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccchhhhhcccC
Confidence            999 6666664 58899999999999999885  6888999999999999995 5555543335555555    667776


Q ss_pred             cCCcc
Q 038551          161 ECGFN  165 (366)
Q Consensus       161 ~~~~~  165 (366)
                      +|.+.
T Consensus       186 ~n~l~  190 (570)
T 2z63_A          186 LNPMN  190 (570)
T ss_dssp             TCCCC
T ss_pred             CCCce
Confidence            66554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.90  E-value=1.3e-23  Score=212.31  Aligned_cols=291  Identities=13%  Similarity=0.127  Sum_probs=182.3

Q ss_pred             CCcccCC-CCCCCCcccEEEcccCCccc------------------cCCC-C--CCCCccEEEccCCCC-ccccchhhcC
Q 038551           22 VGLTEAP-SIGMWKETTRMSLMQNAIQN------------------LTEI-P--TCPRLRTLFLPSNHL-GTVSNNFFHS   78 (366)
Q Consensus        22 ~~~~~~~-~~~~~~~L~~L~l~~~~~~~------------------l~~~-~--~~~~L~~L~l~~~~~-~~i~~~~~~~   78 (366)
                      +++..+| .++++++|+.|++++|.++.                  +|.. .  .+++|++|++++|.+ +.+|.. +..
T Consensus       435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~  513 (876)
T 4ecn_A          435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYD  513 (876)
T ss_dssp             CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGG
T ss_pred             CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhC
Confidence            3444464 47778888888888888887                  6666 5  788888888888865 456654 778


Q ss_pred             CCCCCEEEccCCCCCC--CcchhhcCCC-------CCcEEEccccccccccc--cccCCCCCCEEEcccccccCccChhh
Q 038551           79 MASLRVLILSYNRSLE--NLPLGIFNLV-------SLQHLDISWTGITTLPI--ELKYLVNLKCLNLEYTFRLSRIPQQV  147 (366)
Q Consensus        79 l~~L~~L~l~~~~~~~--~l~~~~~~l~-------~L~~L~l~~~~~~~l~~--~l~~l~~L~~L~l~~~~~~~~~~~~~  147 (366)
                      +++|++|++++|+.++  .+|..+++++       +|++|++++|.++.+|.  .+..+++|++|++++| .+..+| . 
T Consensus       514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~-  590 (876)
T 4ecn_A          514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-A-  590 (876)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-C-
T ss_pred             CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch-h-
Confidence            8888888888884244  4776665554       88888888888888887  6788888888888874 444777 3 


Q ss_pred             hcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcc-cceeeeccccchhhHhHhhhcc--------------
Q 038551          148 ISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKH-LNLLTITLQSFGALQRLLSYCR--------------  212 (366)
Q Consensus       148 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~l~~~~~--------------  212 (366)
                      +.++++|+.|++.+|.+.              ..+..+..+++ |+.|++++|.+..++.......              
T Consensus       591 ~~~L~~L~~L~Ls~N~l~--------------~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l  656 (876)
T 4ecn_A          591 FGTNVKLTDLKLDYNQIE--------------EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI  656 (876)
T ss_dssp             CCTTSEESEEECCSSCCS--------------CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCT
T ss_pred             hcCCCcceEEECcCCccc--------------cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcC
Confidence            777788888888887766              23334555555 6666665555544332111111              


Q ss_pred             -------------cCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccccccccccCCCCCcceee
Q 038551          213 -------------LGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVF  279 (366)
Q Consensus       213 -------------l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~  279 (366)
                                   +....+..|+++.+.- ...+...+..+++|+.|++++|.++.++......... ....+++|+.|+
T Consensus       657 ~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L-~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~-~l~nl~~L~~L~  734 (876)
T 4ecn_A          657 GSEGRNISCSMDDYKGINASTVTLSYNEI-QKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG-NYKNTYLLTTID  734 (876)
T ss_dssp             TTTSSSCSSCTTTCCCCCEEEEECCSSCC-CSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTS-CCTTGGGCCEEE
T ss_pred             CCccccchhhhccccCCCcCEEEccCCcC-CccCHHHHccCCCCCEEECCCCcCCccChHHhccccc-cccccCCccEEE
Confidence                         1101244454544322 2222223446788888888888777666543321000 001234777887


Q ss_pred             ee---------------cccceeEEeeccCc------cccccccccceEEeec------Cc--------ccCCccccccc
Q 038551          280 YK---------------ILKIEARDMACTCS------QYQACPRGLTKFEEHP------LK--------RLECAELKELP  324 (366)
Q Consensus       280 l~---------------l~~l~~L~l~~~c~------~l~~~~~~L~~L~l~~------~~--------~~~~~~L~~L~  324 (366)
                      ++               +++++.|+++ ++.      .+..+++ |+.|+|++      |.        +..+++|+.|+
T Consensus       735 Ls~N~L~~lp~~l~~~~l~~L~~L~Ls-~N~L~~lp~~l~~L~~-L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~  812 (876)
T 4ecn_A          735 LRFNKLTSLSDDFRATTLPYLSNMDVS-YNCFSSFPTQPLNSSQ-LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ  812 (876)
T ss_dssp             CCSSCCCCCCGGGSTTTCTTCCEEECC-SSCCSSCCCGGGGCTT-CCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred             CCCCCCccchHHhhhccCCCcCEEEeC-CCCCCccchhhhcCCC-CCEEECCCCCCcccccccccChHHHhcCCCCCEEE
Confidence            76               2345677777 552      1223567 88888866      33        56788888888


Q ss_pred             CCCCCCCCceE
Q 038551          325 LDCNHGLEQKI  335 (366)
Q Consensus       325 l~~n~~~~~~~  335 (366)
                      +++|.+ +.++
T Consensus       813 Ls~N~L-~~Ip  822 (876)
T 4ecn_A          813 IGSNDI-RKVD  822 (876)
T ss_dssp             CCSSCC-CBCC
T ss_pred             CCCCCC-CccC
Confidence            888887 4443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.90  E-value=3.4e-22  Score=181.84  Aligned_cols=200  Identities=18%  Similarity=0.247  Sum_probs=91.7

Q ss_pred             cccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCc-chhhcCCCCCcEEEccc
Q 038551           35 ETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL-PLGIFNLVSLQHLDISW  113 (366)
Q Consensus        35 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~  113 (366)
                      +++.++++++.++.+|.. ..+.+++|++++|.++.+++..+..+++|++|++++| .++.+ |..+.++++|++|++++
T Consensus        32 ~l~~l~~~~~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             ETTEEECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCeEEEecCCCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCC
Confidence            455555555555544432 1234555555555555554443555555555555555 22322 44455555555555555


Q ss_pred             cccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccce
Q 038551          114 TGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNL  193 (366)
Q Consensus       114 ~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  193 (366)
                      |.++.+|..+.  ++|++|++++ +.+..++...+.++++|++|++.+|.+..           .......+..+++|+.
T Consensus       110 n~l~~l~~~~~--~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~~~l~~L~~  175 (330)
T 1xku_A          110 NQLKELPEKMP--KTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKS-----------SGIENGAFQGMKKLSY  175 (330)
T ss_dssp             SCCSBCCSSCC--TTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCG-----------GGBCTTGGGGCTTCCE
T ss_pred             CcCCccChhhc--ccccEEECCC-CcccccCHhHhcCCccccEEECCCCcCCc-----------cCcChhhccCCCCcCE
Confidence            55555544332  4555555555 23344443334555555555555555432           0122334444555555


Q ss_pred             eeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEe
Q 038551          194 LTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELK  257 (366)
Q Consensus       194 L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~  257 (366)
                      |++++|.+..++....    .  .++.|++.++. +.......+..+++|++|++++|.++.++
T Consensus       176 L~l~~n~l~~l~~~~~----~--~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  232 (330)
T 1xku_A          176 IRIADTNITTIPQGLP----P--SLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVD  232 (330)
T ss_dssp             EECCSSCCCSCCSSCC----T--TCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEEC
T ss_pred             EECCCCccccCCcccc----c--cCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeC
Confidence            5555555444332110    1  23334333321 11111122445555555555555555444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.90  E-value=2.3e-22  Score=194.28  Aligned_cols=143  Identities=24%  Similarity=0.278  Sum_probs=109.5

Q ss_pred             ccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCC
Q 038551           14 ENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR   91 (366)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~   91 (366)
                      .+.+++.++++..+|.-.. ++|+.|++++|.++.+++.  ..+++|++|++++|.+..+++..|..+++|++|++++| 
T Consensus         2 ~~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-   79 (520)
T 2z7x_B            2 EFLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-   79 (520)
T ss_dssp             CCEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-
T ss_pred             cceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-
Confidence            3577888888888875332 8899999999988887643  78888999999999888876666888899999999998 


Q ss_pred             CCCCcchhhcCCCCCcEEEcccccccc--ccccccCCCCCCEEEcccccccCccChhhhcCCcCC--cEEEeecCCc
Q 038551           92 SLENLPLGIFNLVSLQHLDISWTGITT--LPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKML--RALRMFECGF  164 (366)
Q Consensus        92 ~~~~l~~~~~~l~~L~~L~l~~~~~~~--l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~  164 (366)
                      .++.+|..  .+++|++|++++|.++.  +|..++.+++|++|++++|. +...   .+..+++|  ++|++.+|.+
T Consensus        80 ~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           80 KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKS---SVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGG---GGGGGTTSCEEEEEEEECTT
T ss_pred             ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cchh---hccccccceeeEEEeecccc
Confidence            66777765  78889999999988875  56778888888888888853 3331   14555556  7777776665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.89  E-value=3e-22  Score=182.37  Aligned_cols=146  Identities=23%  Similarity=0.300  Sum_probs=71.0

Q ss_pred             cEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCC
Q 038551           15 NFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRS   92 (366)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~   92 (366)
                      +.+.+.++++..+|... .++++.|++++|.+..++..  ..+++|++|++++|.+..+++..+..+++|++|++++| .
T Consensus        36 ~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~  113 (332)
T 2ft3_A           36 RVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-H  113 (332)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-C
T ss_pred             CEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-c
Confidence            34455555555554211 24555555555555554332  45555555555555555544333555555555555555 4


Q ss_pred             CCCcchhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcccccccC-ccChhhhcCCcCCcEEEeecCCcc
Q 038551           93 LENLPLGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLS-RIPQQVISDLKMLRALRMFECGFN  165 (366)
Q Consensus        93 ~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~  165 (366)
                      ++.+|..+.  ++|++|++++|.++.++.. +..+++|++|++++|.... ......+..+ +|++|++.+|.+.
T Consensus       114 l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          114 LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            444444332  4555555555555554432 4555555555555532211 1111113333 5555555555544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.89  E-value=2.7e-22  Score=202.57  Aligned_cols=302  Identities=17%  Similarity=0.229  Sum_probs=210.7

Q ss_pred             CCccEEEecCCCccc------------------CC-CCC--CCCcccEEEcccCCccc-cCCC-CCCCCccEEEccCCC-
Q 038551           12 EKENFLVLAGVGLTE------------------AP-SIG--MWKETTRMSLMQNAIQN-LTEI-PTCPRLRTLFLPSNH-   67 (366)
Q Consensus        12 ~~~~~~~~~~~~~~~------------------~~-~~~--~~~~L~~L~l~~~~~~~-l~~~-~~~~~L~~L~l~~~~-   67 (366)
                      ...+.+++.++.+..                  +| .++  ++++|+.|++++|.+.. +|.. ..+++|+.|++++|. 
T Consensus       448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~  527 (876)
T 4ecn_A          448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG  527 (876)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred             CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence            467788888888888                  74 455  89999999999998766 6655 888999999999997 


Q ss_pred             Ccc--ccchhhcC-------CCCCCEEEccCCCCCCCcch--hhcCCCCCcEEEccccccccccccccCCCCCCEEEccc
Q 038551           68 LGT--VSNNFFHS-------MASLRVLILSYNRSLENLPL--GIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEY  136 (366)
Q Consensus        68 ~~~--i~~~~~~~-------l~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~  136 (366)
                      ++.  +|.. +..       +++|++|++++| .++.+|.  .++++++|++|++++|.++.+| .++.+++|+.|++++
T Consensus       528 lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~  604 (876)
T 4ecn_A          528 ISAAQLKAD-WTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDY  604 (876)
T ss_dssp             SCHHHHHHH-HHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCS
T ss_pred             cccccchHH-HHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcC
Confidence            764  6665 444       448999999999 5668888  8889999999999999888888 788889999999998


Q ss_pred             ccccCccChhhhcCCcC-CcEEEeecCCccccccc-ccc-------------ccCC-chhhhhhhh--cCcccceeeecc
Q 038551          137 TFRLSRIPQQVISDLKM-LRALRMFECGFNVELEA-DSI-------------LFGD-SEVLVEELL--VLKHLNLLTITL  198 (366)
Q Consensus       137 ~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~-~~~-------------~~~~-~~~~~~~l~--~l~~L~~L~l~~  198 (366)
                      | .+..+|.. +.++++ |+.|++.+|.+...... ...             ...+ .+..+..+.  .+++|+.|++++
T Consensus       605 N-~l~~lp~~-l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~  682 (876)
T 4ecn_A          605 N-QIEEIPED-FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY  682 (876)
T ss_dssp             S-CCSCCCTT-SCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCS
T ss_pred             C-ccccchHH-HhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccC
Confidence            5 45578876 777887 89999988887632110 000             0000 001111122  234788999999


Q ss_pred             ccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhh-------ccCCcCcEEEeccCccceEeccccccccccccCC
Q 038551          199 QSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAF-------ASLRHLRTLQLYFNDLEELKIDAGELKRIREICG  271 (366)
Q Consensus       199 ~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l-------~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~  271 (366)
                      |.+..++... ...+++  ++.|+++.+.- ...+...+       .++++|++|++++|.++.++.....       ..
T Consensus       683 N~L~~lp~~~-~~~l~~--L~~L~Ls~N~L-~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~-------~~  751 (876)
T 4ecn_A          683 NEIQKFPTEL-FATGSP--ISTIILSNNLM-TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA-------TT  751 (876)
T ss_dssp             SCCCSCCHHH-HHTTCC--CSEEECCSCCC-SCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGST-------TT
T ss_pred             CcCCccCHHH-HccCCC--CCEEECCCCcC-CccChHHhccccccccccCCccEEECCCCCCccchHHhhh-------cc
Confidence            8888765432 223333  44455554321 22221112       2345999999999998877654321       26


Q ss_pred             CCCcceeeee-------------cccceeEEeeccCc-------------cccccccccceEEeecCccc-----CCccc
Q 038551          272 FHSLQKVFYK-------------ILKIEARDMACTCS-------------QYQACPRGLTKFEEHPLKRL-----ECAEL  320 (366)
Q Consensus       272 ~~~L~~L~l~-------------l~~l~~L~l~~~c~-------------~l~~~~~~L~~L~l~~~~~~-----~~~~L  320 (366)
                      +++|+.|+++             +++++.|+++ ++.             .+..+++ |+.|+|++|.+.     -+++|
T Consensus       752 l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls-~N~~ls~N~l~~~ip~~l~~L~~-L~~L~Ls~N~L~~Ip~~l~~~L  829 (876)
T 4ecn_A          752 LPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIR-HQRDAEGNRILRQWPTGITTCPS-LIQLQIGSNDIRKVDEKLTPQL  829 (876)
T ss_dssp             CTTCCEEECCSSCCSSCCCGGGGCTTCCEEECC-CCBCTTCCBCCCCCCTTGGGCSS-CCEEECCSSCCCBCCSCCCSSS
T ss_pred             CCCcCEEEeCCCCCCccchhhhcCCCCCEEECC-CCCCcccccccccChHHHhcCCC-CCEEECCCCCCCccCHhhcCCC
Confidence            8899999998             4566888887 632             2233788 999999999922     34689


Q ss_pred             ccccCCCCCCC
Q 038551          321 KELPLDCNHGL  331 (366)
Q Consensus       321 ~~L~l~~n~~~  331 (366)
                      +.|++++|++.
T Consensus       830 ~~LdLs~N~l~  840 (876)
T 4ecn_A          830 YILDIADNPNI  840 (876)
T ss_dssp             CEEECCSCTTC
T ss_pred             CEEECCCCCCC
Confidence            99999999974

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=5.4e-22  Score=194.80  Aligned_cols=276  Identities=16%  Similarity=0.197  Sum_probs=200.7

Q ss_pred             ccEEEecCCCcccCCC--CCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccC
Q 038551           14 ENFLVLAGVGLTEAPS--IGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSY   89 (366)
Q Consensus        14 ~~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~   89 (366)
                      .+.+.+.++.+..+|.  +.++++|+.|++++|.+..+++.  ..+++|++|++++|.+..+++..|+.+++|++|++++
T Consensus        53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  132 (597)
T 3oja_B           53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER  132 (597)
T ss_dssp             CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeC
Confidence            4566667777777764  67789999999999999997653  8999999999999999999888789999999999999


Q ss_pred             CCCCCCcchh-hcCCCCCcEEEccccccccccc-cccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcccc
Q 038551           90 NRSLENLPLG-IFNLVSLQHLDISWTGITTLPI-ELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVE  167 (366)
Q Consensus        90 ~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  167 (366)
                      | .++.+|.. ++++++|++|++++|.++.++. .+..+++|++|++++| .+..++   +..+++|+.|++.+|.+...
T Consensus       133 n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~---~~~l~~L~~L~l~~n~l~~l  207 (597)
T 3oja_B          133 N-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYNLLSTL  207 (597)
T ss_dssp             S-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC---GGGCTTCSEEECCSSCCSEE
T ss_pred             C-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC---hhhhhhhhhhhcccCccccc
Confidence            9 67777765 5899999999999999987665 5899999999999994 555554   34566777777777665531


Q ss_pred             cccccc---ccC--CchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCc
Q 038551          168 LEADSI---LFG--DSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRH  242 (366)
Q Consensus       168 ~~~~~~---~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~  242 (366)
                      ......   ...  .......  ...++|+.|++++|.+.+.+.+..+++     +..|+++++. +.......+..+++
T Consensus       208 ~~~~~L~~L~ls~n~l~~~~~--~~~~~L~~L~L~~n~l~~~~~l~~l~~-----L~~L~Ls~N~-l~~~~~~~~~~l~~  279 (597)
T 3oja_B          208 AIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLLNYPG-----LVEVDLSYNE-LEKIMYHPFVKMQR  279 (597)
T ss_dssp             ECCTTCSEEECCSSCCCEEEC--SCCSCCCEEECCSSCCCCCGGGGGCTT-----CSEEECCSSC-CCEEESGGGTTCSS
T ss_pred             cCCchhheeeccCCccccccc--ccCCCCCEEECCCCCCCCChhhccCCC-----CCEEECCCCc-cCCCCHHHhcCccC
Confidence            100000   000  0000011  113579999999998887655544444     3335555432 22222234788999


Q ss_pred             CcEEEeccCccceEeccccccccccccCCCCCcceeeee-------------cccceeEEeeccCcc----ccccccccc
Q 038551          243 LRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYK-------------ILKIEARDMACTCSQ----YQACPRGLT  305 (366)
Q Consensus       243 L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~-------------l~~l~~L~l~~~c~~----l~~~~~~L~  305 (366)
                      |+.|++++|.++.++...         ..+++|+.|+++             ++.++.|+++ +|.-    +..+|. |+
T Consensus       280 L~~L~Ls~N~l~~l~~~~---------~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~-L~  348 (597)
T 3oja_B          280 LERLYISNNRLVALNLYG---------QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLD-HNSIVTLKLSTHHT-LK  348 (597)
T ss_dssp             CCEEECTTSCCCEEECSS---------SCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECC-SSCCCCCCCCTTCC-CS
T ss_pred             CCEEECCCCCCCCCCccc---------ccCCCCcEEECCCCCCCccCcccccCCCCCEEECC-CCCCCCcChhhcCC-CC
Confidence            999999999988876543         457889999887             4556888888 7742    233788 99


Q ss_pred             eEEeecCc
Q 038551          306 KFEEHPLK  313 (366)
Q Consensus       306 ~L~l~~~~  313 (366)
                      .|++++|+
T Consensus       349 ~L~l~~N~  356 (597)
T 3oja_B          349 NLTLSHND  356 (597)
T ss_dssp             EEECCSSC
T ss_pred             EEEeeCCC
Confidence            99999999

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.89  E-value=6.9e-23  Score=185.05  Aligned_cols=174  Identities=16%  Similarity=0.197  Sum_probs=87.5

Q ss_pred             CccEEEecCCCccc---C-CCCCCCCcccEEEccc-CCccc-cCCC-CCCCCccEEEccCCCCc-cccchhhcCCCCCCE
Q 038551           13 KENFLVLAGVGLTE---A-PSIGMWKETTRMSLMQ-NAIQN-LTEI-PTCPRLRTLFLPSNHLG-TVSNNFFHSMASLRV   84 (366)
Q Consensus        13 ~~~~~~~~~~~~~~---~-~~~~~~~~L~~L~l~~-~~~~~-l~~~-~~~~~L~~L~l~~~~~~-~i~~~~~~~l~~L~~   84 (366)
                      ..+.+++.++++.+   + +.+.++++|+.|++++ |.+.. +|.. ..+++|++|++++|.+. .+|.. +..+++|++
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~  129 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTCCE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH-HhCCCCCCE
Confidence            34445555555543   2 3455555555555553 44443 3332 45555555555555554 33333 555555555


Q ss_pred             EEccCCCCCCCcchhhcCCCCCcEEEccccccc-cccccccCCC-CCCEEEcccccccCccChhhhcCCcCCcEEEeecC
Q 038551           85 LILSYNRSLENLPLGIFNLVSLQHLDISWTGIT-TLPIELKYLV-NLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFEC  162 (366)
Q Consensus        85 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~l~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  162 (366)
                      |++++|...+.+|..+..+++|++|++++|.++ .+|..+..++ +|++|++++|...+.+|.. +..++ |++|++.+|
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~N  207 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSRN  207 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCSS
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcCC
Confidence            555555333345555555555555555555554 4555555554 5555555554333344443 44443 555555555


Q ss_pred             CccccccccccccCCchhhhhhhhcCcccceeeeccccch
Q 038551          163 GFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFG  202 (366)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  202 (366)
                      .+.+             ..+..+..+++|+.|++++|.+.
T Consensus       208 ~l~~-------------~~~~~~~~l~~L~~L~L~~N~l~  234 (313)
T 1ogq_A          208 MLEG-------------DASVLFGSDKNTQKIHLAKNSLA  234 (313)
T ss_dssp             EEEE-------------CCGGGCCTTSCCSEEECCSSEEC
T ss_pred             cccC-------------cCCHHHhcCCCCCEEECCCCcee
Confidence            5543             33444445555555555555444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.89  E-value=8e-22  Score=186.53  Aligned_cols=245  Identities=24%  Similarity=0.282  Sum_probs=194.9

Q ss_pred             eccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCE
Q 038551            7 STINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRV   84 (366)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~   84 (366)
                      |.|.. ....+++.+.++..+|.-. .++++.|++++|.++.++..  ..+++|++|++++|.+..+++..|..+++|++
T Consensus        39 C~C~~-~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~  116 (440)
T 3zyj_A           39 CSCSN-QFSKVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNT  116 (440)
T ss_dssp             SEECT-TSCEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCE
T ss_pred             CEeCC-CCCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCE
Confidence            44432 2356788999999997533 37899999999999997644  89999999999999999998887999999999


Q ss_pred             EEccCCCCCCCcch-hhcCCCCCcEEEccccccccccc-cccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecC
Q 038551           85 LILSYNRSLENLPL-GIFNLVSLQHLDISWTGITTLPI-ELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFEC  162 (366)
Q Consensus        85 L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  162 (366)
                      |++++| .++.++. .+..+++|++|++++|.++.++. .+..+++|++|++++|+.+..++...+.++++|++|++.+|
T Consensus       117 L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n  195 (440)
T 3zyj_A          117 LELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC  195 (440)
T ss_dssp             EECCSS-CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred             EECCCC-cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence            999999 6677764 68899999999999999998876 58999999999999988999988877899999999999999


Q ss_pred             CccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCc
Q 038551          163 GFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRH  242 (366)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~  242 (366)
                      .+..               ...+..+++|+.|++++|.+..+.. ..+..+.+  ++.|++.++. +.......+..+++
T Consensus       196 ~l~~---------------~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~--L~~L~L~~n~-l~~~~~~~~~~l~~  256 (440)
T 3zyj_A          196 NLRE---------------IPNLTPLIKLDELDLSGNHLSAIRP-GSFQGLMH--LQKLWMIQSQ-IQVIERNAFDNLQS  256 (440)
T ss_dssp             CCSS---------------CCCCTTCSSCCEEECTTSCCCEECT-TTTTTCTT--CCEEECTTCC-CCEECTTSSTTCTT
T ss_pred             cCcc---------------ccccCCCcccCEEECCCCccCccCh-hhhccCcc--CCEEECCCCc-eeEEChhhhcCCCC
Confidence            9874               1247788999999999998876532 12344444  4445554432 22232234788899


Q ss_pred             CcEEEeccCccceEeccccccccccccCCCCCcceeeee
Q 038551          243 LRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYK  281 (366)
Q Consensus       243 L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~  281 (366)
                      |++|++++|.++.++...+        ..+++|+.|+++
T Consensus       257 L~~L~L~~N~l~~~~~~~~--------~~l~~L~~L~L~  287 (440)
T 3zyj_A          257 LVEINLAHNNLTLLPHDLF--------TPLHHLERIHLH  287 (440)
T ss_dssp             CCEEECTTSCCCCCCTTTT--------SSCTTCCEEECC
T ss_pred             CCEEECCCCCCCccChhHh--------ccccCCCEEEcC
Confidence            9999999999988776544        557888888876

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.88  E-value=7.4e-22  Score=187.39  Aligned_cols=239  Identities=24%  Similarity=0.238  Sum_probs=192.5

Q ss_pred             ccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCC
Q 038551           14 ENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR   91 (366)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~   91 (366)
                      ...+++.+.++..+|.-. .++++.|++++|.++.++..  ..+++|++|++++|.+..+++..|..+++|++|++++| 
T Consensus        56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-  133 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-  133 (452)
T ss_dssp             SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred             CcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-
Confidence            356788999999997422 37999999999999997544  89999999999999999988777999999999999999 


Q ss_pred             CCCCcch-hhcCCCCCcEEEccccccccccc-cccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcccccc
Q 038551           92 SLENLPL-GIFNLVSLQHLDISWTGITTLPI-ELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELE  169 (366)
Q Consensus        92 ~~~~l~~-~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  169 (366)
                      .++.+|. .+.++++|++|++++|.++.++. .+..+++|++|++++|+.++.++...+.++++|++|++.+|.+..   
T Consensus       134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~---  210 (452)
T 3zyi_A          134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD---  210 (452)
T ss_dssp             CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS---
T ss_pred             cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc---
Confidence            6666664 48889999999999999998876 489999999999999999999988778999999999999999875   


Q ss_pred             ccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEec
Q 038551          170 ADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLY  249 (366)
Q Consensus       170 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~  249 (366)
                                  ...+..+++|+.|++++|.+..+.. ..+..+.+  ++.|++.++. +.......+..+++|++|+++
T Consensus       211 ------------~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~--L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~  274 (452)
T 3zyi_A          211 ------------MPNLTPLVGLEELEMSGNHFPEIRP-GSFHGLSS--LKKLWVMNSQ-VSLIERNAFDGLASLVELNLA  274 (452)
T ss_dssp             ------------CCCCTTCTTCCEEECTTSCCSEECG-GGGTTCTT--CCEEECTTSC-CCEECTTTTTTCTTCCEEECC
T ss_pred             ------------cccccccccccEEECcCCcCcccCc-ccccCccC--CCEEEeCCCc-CceECHHHhcCCCCCCEEECC
Confidence                        1357788999999999998886532 12344444  4445555432 222222347889999999999


Q ss_pred             cCccceEeccccccccccccCCCCCcceeeee
Q 038551          250 FNDLEELKIDAGELKRIREICGFHSLQKVFYK  281 (366)
Q Consensus       250 ~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~  281 (366)
                      +|.++.++...+        ..+++|+.|+++
T Consensus       275 ~N~l~~~~~~~~--------~~l~~L~~L~L~  298 (452)
T 3zyi_A          275 HNNLSSLPHDLF--------TPLRYLVELHLH  298 (452)
T ss_dssp             SSCCSCCCTTSS--------TTCTTCCEEECC
T ss_pred             CCcCCccChHHh--------ccccCCCEEEcc
Confidence            999988776543        557888888876

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.88  E-value=1.8e-21  Score=192.05  Aligned_cols=158  Identities=22%  Similarity=0.210  Sum_probs=125.4

Q ss_pred             eeeeccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCC
Q 038551            4 RIASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMAS   81 (366)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~   81 (366)
                      |-+|.+... ...+.|.+.++..||.-- -+.++.|++++|.++.+++.  ..+++|++|++++|.|..+++++|..+++
T Consensus        24 ~~~c~~~~~-~~~~~c~~~~l~~vP~~l-p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~  101 (635)
T 4g8a_A           24 WEPCVEVVP-NITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH  101 (635)
T ss_dssp             -CCSEEEET-TTEEECTTSCCSSCCSSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred             CCCccccCC-CCEEECCCCCcCccCCCC-CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCC
Confidence            445554433 345688888899987422 15799999999999998754  88999999999999999998888999999


Q ss_pred             CCEEEccCCCCCCCcc-hhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcccccccCc--cChhhhcCCcCCcEE
Q 038551           82 LRVLILSYNRSLENLP-LGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSR--IPQQVISDLKMLRAL  157 (366)
Q Consensus        82 L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L  157 (366)
                      |++|++++| .++.+| ..|.++++|++|++++|.++.+|.. ++.+++|++|++++| .+..  .|.. +..+++|++|
T Consensus       102 L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~-~~~l~~L~~L  178 (635)
T 4g8a_A          102 LSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHL  178 (635)
T ss_dssp             CCEEECTTC-CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEE
T ss_pred             CCEEEccCC-cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchh-hccchhhhhh
Confidence            999999999 677776 4578999999999999999988764 889999999999985 4443  3443 7788899999


Q ss_pred             EeecCCccc
Q 038551          158 RMFECGFNV  166 (366)
Q Consensus       158 ~l~~~~~~~  166 (366)
                      ++.+|.+..
T Consensus       179 ~L~~N~l~~  187 (635)
T 4g8a_A          179 DLSSNKIQS  187 (635)
T ss_dssp             ECCSSCCCE
T ss_pred             cccCccccc
Confidence            998887654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.88  E-value=2.1e-21  Score=197.82  Aligned_cols=154  Identities=19%  Similarity=0.171  Sum_probs=125.6

Q ss_pred             CCccEEEecCCCcccC--CCCCCCCcccEEEcccCCc-cccC-CC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEE
Q 038551           12 EKENFLVLAGVGLTEA--PSIGMWKETTRMSLMQNAI-QNLT-EI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLI   86 (366)
Q Consensus        12 ~~~~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~-~~l~-~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~   86 (366)
                      ...+.+++.++.+..+  ..+.++++|+.|++++|.. ..++ .. ..+++|++|++++|.+..+.+..|..+++|++|+
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  103 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR  103 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence            5677889999999887  4799999999999999954 4463 33 8999999999999999988776699999999999


Q ss_pred             ccCCCCCCCcchh--hcCCCCCcEEEcccccccccc--ccccCCCCCCEEEcccccccCccChhhhcCC--cCCcEEEee
Q 038551           87 LSYNRSLENLPLG--IFNLVSLQHLDISWTGITTLP--IELKYLVNLKCLNLEYTFRLSRIPQQVISDL--KMLRALRMF  160 (366)
Q Consensus        87 l~~~~~~~~l~~~--~~~l~~L~~L~l~~~~~~~l~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~  160 (366)
                      +++|...+.+|..  ++++++|++|++++|.++.++  ..++++++|++|++++|......+.. +..+  ++|+.|++.
T Consensus       104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~l~~~~L~~L~L~  182 (844)
T 3j0a_A          104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPLQGKTLSFFSLA  182 (844)
T ss_dssp             CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHHHHHCSSCCCEEC
T ss_pred             CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-cccccCCccceEECC
Confidence            9999544445654  889999999999999998653  46899999999999996544444443 5555  788888888


Q ss_pred             cCCccc
Q 038551          161 ECGFNV  166 (366)
Q Consensus       161 ~~~~~~  166 (366)
                      +|.+..
T Consensus       183 ~n~l~~  188 (844)
T 3j0a_A          183 ANSLYS  188 (844)
T ss_dssp             CSBSCC
T ss_pred             CCcccc
Confidence            887765

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=3.7e-22  Score=181.42  Aligned_cols=216  Identities=22%  Similarity=0.271  Sum_probs=129.4

Q ss_pred             CcccEEEcccCCccccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcc
Q 038551           34 KETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDIS  112 (366)
Q Consensus        34 ~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~  112 (366)
                      ++++.|++++|.++.+|.. ..+++|++|++++|.+..+|.. +..+++|++|++++| .++.+|..++++++|++|+++
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARN-PLRALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECC
Confidence            5666677777766666655 5566677777777666666655 566667777777776 445666666666777777776


Q ss_pred             ccc-ccccccccc---------CCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhh
Q 038551          113 WTG-ITTLPIELK---------YLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLV  182 (366)
Q Consensus       113 ~~~-~~~l~~~l~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  182 (366)
                      +|. ...+|..+.         .+++|++|++++| .+..+|.. +.++++|++|++.+|.+.+              .+
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~-l~~l~~L~~L~L~~N~l~~--------------l~  222 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS-IANLQNLKSLKIRNSPLSA--------------LG  222 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGG-GGGCTTCCEEEEESSCCCC--------------CC
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHh-hcCCCCCCEEEccCCCCCc--------------Cc
Confidence            653 335555443         3667777777663 44466655 6666677777777766653              23


Q ss_pred             hhhhcCcccceeeeccccchh-hHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccC-ccceEeccc
Q 038551          183 EELLVLKHLNLLTITLQSFGA-LQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFN-DLEELKIDA  260 (366)
Q Consensus       183 ~~l~~l~~L~~L~l~~~~~~~-~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~l~~~~  260 (366)
                      ..+..+++|+.|++++|...+ ++.  .+..+.+  ++.|++.++......+ ..+..+++|++|++++| .++.+|...
T Consensus       223 ~~l~~l~~L~~L~Ls~n~~~~~~p~--~~~~l~~--L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~iP~~l  297 (328)
T 4fcg_A          223 PAIHHLPKLEELDLRGCTALRNYPP--IFGGRAP--LKRLILKDCSNLLTLP-LDIHRLTQLEKLDLRGCVNLSRLPSLI  297 (328)
T ss_dssp             GGGGGCTTCCEEECTTCTTCCBCCC--CTTCCCC--CCEEECTTCTTCCBCC-TTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred             hhhccCCCCCEEECcCCcchhhhHH--HhcCCCC--CCEEECCCCCchhhcc-hhhhcCCCCCEEeCCCCCchhhccHHH
Confidence            345666667777776655443 221  1223333  4445555543333222 22677788888888887 455555333


Q ss_pred             cccccccccCCCCCcceeeee
Q 038551          261 GELKRIREICGFHSLQKVFYK  281 (366)
Q Consensus       261 ~~~~~~~~~~~~~~L~~L~l~  281 (366)
                               ..+++|+.+.+.
T Consensus       298 ---------~~L~~L~~l~l~  309 (328)
T 4fcg_A          298 ---------AQLPANCIILVP  309 (328)
T ss_dssp             ---------GGSCTTCEEECC
T ss_pred             ---------hhccCceEEeCC
Confidence                     456777777665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.88  E-value=2.2e-21  Score=172.80  Aligned_cols=229  Identities=25%  Similarity=0.289  Sum_probs=179.0

Q ss_pred             eccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCE
Q 038551            7 STINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRV   84 (366)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~   84 (366)
                      |.|..+....+++.+.++..+|. +-.++++.|++++|.++.++..  ..+++|++|++++|.+..+.+..+..+++|++
T Consensus         6 C~C~~~~~~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   84 (285)
T 1ozn_A            6 CVCYNEPKVTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ   84 (285)
T ss_dssp             CEEECSSSCEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             ceECCCCCeEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCE
Confidence            77777777889999999999974 3358999999999999998754  88999999999999999886666999999999


Q ss_pred             EEccCCCCCCCc-chhhcCCCCCcEEEcccccccccc-ccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecC
Q 038551           85 LILSYNRSLENL-PLGIFNLVSLQHLDISWTGITTLP-IELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFEC  162 (366)
Q Consensus        85 L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  162 (366)
                      |++++|..++.+ |..+..+++|++|++++|.++.++ ..+..+++|++|++++ +.+..++...+.++++|++|++.+|
T Consensus        85 L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n  163 (285)
T 1ozn_A           85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGN  163 (285)
T ss_dssp             EECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC-CcccccCHhHhccCCCccEEECCCC
Confidence            999999546666 677899999999999999998774 5588999999999999 5666777665889999999999999


Q ss_pred             CccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCc
Q 038551          163 GFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRH  242 (366)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~  242 (366)
                      .+..             .....+..+++|+.|++++|.+..+.. ..+..+++  ++.|++.++. +.......+..+++
T Consensus       164 ~l~~-------------~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~--L~~L~l~~n~-l~~~~~~~~~~l~~  226 (285)
T 1ozn_A          164 RISS-------------VPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGR--LMTLYLFANN-LSALPTEALAPLRA  226 (285)
T ss_dssp             CCCE-------------ECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTT--CCEEECCSSC-CSCCCHHHHTTCTT
T ss_pred             cccc-------------cCHHHhcCccccCEEECCCCcccccCH-hHccCccc--ccEeeCCCCc-CCcCCHHHcccCcc
Confidence            9875             334457788999999999998776421 11233333  3445554432 22333334667777


Q ss_pred             CcEEEeccCccc
Q 038551          243 LRTLQLYFNDLE  254 (366)
Q Consensus       243 L~~L~l~~~~l~  254 (366)
                      |++|++++|.+.
T Consensus       227 L~~L~l~~N~~~  238 (285)
T 1ozn_A          227 LQYLRLNDNPWV  238 (285)
T ss_dssp             CCEEECCSSCEE
T ss_pred             cCEEeccCCCcc
Confidence            888888777655

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.87  E-value=2.5e-21  Score=176.29  Aligned_cols=259  Identities=18%  Similarity=0.172  Sum_probs=187.0

Q ss_pred             cccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCc-chhhcCCCCCcEEEccc
Q 038551           35 ETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL-PLGIFNLVSLQHLDISW  113 (366)
Q Consensus        35 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~  113 (366)
                      +++.++++++.++.+|.. -.+++++|++++|.+..+++..+..+++|++|++++| .++.+ |..+.++++|++|++++
T Consensus        34 ~l~~l~~~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKE-ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             ETTEEECCSSCCSSCCSC-CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCS
T ss_pred             cCCEEECCCCCccccCCC-CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCC
Confidence            799999999999988865 2468999999999999887766999999999999999 55554 77899999999999999


Q ss_pred             cccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccce
Q 038551          114 TGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNL  193 (366)
Q Consensus       114 ~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  193 (366)
                      |.++.+|..+.  ++|++|++++ +.+..++...+.++++|++|++.+|.+..           ....+..+..+ +|+.
T Consensus       112 n~l~~l~~~~~--~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~~~l-~L~~  176 (332)
T 2ft3_A          112 NHLVEIPPNLP--SSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLEN-----------SGFEPGAFDGL-KLNY  176 (332)
T ss_dssp             SCCCSCCSSCC--TTCCEEECCS-SCCCCCCSGGGSSCSSCCEEECCSCCCBG-----------GGSCTTSSCSC-CCSC
T ss_pred             CcCCccCcccc--ccCCEEECCC-CccCccCHhHhCCCccCCEEECCCCcccc-----------CCCCcccccCC-ccCE
Confidence            99999987655  8999999999 56777777668999999999999999863           11334455555 8888


Q ss_pred             eeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccccccccccCCCC
Q 038551          194 LTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFH  273 (366)
Q Consensus       194 L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~  273 (366)
                      |++++|.+..++... .   .  .++.|++++.. +.......+..+++|++|++++|.++.++....        ..++
T Consensus       177 L~l~~n~l~~l~~~~-~---~--~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~--------~~l~  241 (332)
T 2ft3_A          177 LRISEAKLTGIPKDL-P---E--TLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL--------SFLP  241 (332)
T ss_dssp             CBCCSSBCSSCCSSS-C---S--SCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG--------GGCT
T ss_pred             EECcCCCCCccCccc-c---C--CCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCcCChhHh--------hCCC
Confidence            899888887765321 1   2  24445554432 222222336778888888888888877654332        4567


Q ss_pred             CcceeeeecccceeEEeeccCccccccccccceEEeecCccc--------------CCcccccccCCCCCCC
Q 038551          274 SLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLKRL--------------ECAELKELPLDCNHGL  331 (366)
Q Consensus       274 ~L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~~~--------------~~~~L~~L~l~~n~~~  331 (366)
                      +|+.|+++-..+.  .+.   ..+..+++ |++|++++|++.              ..+.|+.|++++|+..
T Consensus       242 ~L~~L~L~~N~l~--~lp---~~l~~l~~-L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          242 TLRELHLDNNKLS--RVP---AGLPDLKL-LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             TCCEEECCSSCCC--BCC---TTGGGCTT-CCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             CCCEEECCCCcCe--ecC---hhhhcCcc-CCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence            7777777522221  111   11333666 778887777711              1355677777777763

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.87  E-value=1.1e-20  Score=182.40  Aligned_cols=301  Identities=16%  Similarity=0.099  Sum_probs=195.0

Q ss_pred             CCccEEEecCCCcccCC--CCCCCCcccEEEcccCCccccC-CC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEc
Q 038551           12 EKENFLVLAGVGLTEAP--SIGMWKETTRMSLMQNAIQNLT-EI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLIL   87 (366)
Q Consensus        12 ~~~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~l~-~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l   87 (366)
                      ...+.+++.++.+..++  .+.++++|++|++++|.++.++ .. ..+++|++|++++|.+..+|..   .+++|++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---ccCCccEEec
Confidence            56778888888888874  5888999999999999998864 33 8889999999999988888764   7889999999


Q ss_pred             cCCCCCC-CcchhhcCCCCCcEEEccccccccccccccCCCCC--CEEEcccccc--cCccChhhhcC------------
Q 038551           88 SYNRSLE-NLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNL--KCLNLEYTFR--LSRIPQQVISD------------  150 (366)
Q Consensus        88 ~~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L--~~L~l~~~~~--~~~~~~~~~~~------------  150 (366)
                      ++|...+ .+|..++++++|++|++++|.++.  ..+..+++|  ++|++++|..  ....|.. +..            
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~-l~~l~~~~l~l~l~~  174 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG-LQDFNTESLHIVFPT  174 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT-TTTCCEEEEEEECCS
T ss_pred             cCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccc-ccccccceEEEEecc
Confidence            9994333 367788889999999998887764  224445555  6666665433  1221111 111            


Q ss_pred             -----------------------------------------------------------------------CcCCcEEEe
Q 038551          151 -----------------------------------------------------------------------LKMLRALRM  159 (366)
Q Consensus       151 -----------------------------------------------------------------------~~~L~~L~l  159 (366)
                                                                                             .++|++|++
T Consensus       175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l  254 (520)
T 2z7x_B          175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI  254 (520)
T ss_dssp             SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEE
T ss_pred             CcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEe
Confidence                                                                                   114555555


Q ss_pred             ecCCcccccccc-------cccc--------C--Cch-hhhhh----------------------hhcCcccceeeeccc
Q 038551          160 FECGFNVELEAD-------SILF--------G--DSE-VLVEE----------------------LLVLKHLNLLTITLQ  199 (366)
Q Consensus       160 ~~~~~~~~~~~~-------~~~~--------~--~~~-~~~~~----------------------l~~l~~L~~L~l~~~  199 (366)
                      .+|.+.+.....       ....        .  ... ..+..                      ...+++|+.|++++|
T Consensus       255 ~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n  334 (520)
T 2z7x_B          255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN  334 (520)
T ss_dssp             EEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSS
T ss_pred             ecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECC
Confidence            555444211000       0000        0  000 01111                      156788999999988


Q ss_pred             cchh-hHhHhhhcccCcccceeeeccccCCCCCc-ch-hhhccCCcCcEEEeccCccce-EeccccccccccccCCCCCc
Q 038551          200 SFGA-LQRLLSYCRLGSISTQCLCLRHLNNSNSL-SV-FAFASLRHLRTLQLYFNDLEE-LKIDAGELKRIREICGFHSL  275 (366)
Q Consensus       200 ~~~~-~~~l~~~~~l~~l~l~~L~~~~~~~~~~~-~~-~~l~~~~~L~~L~l~~~~l~~-l~~~~~~~~~~~~~~~~~~L  275 (366)
                      .+.+ .+.  .+..+++  ++.|+++++.- ... .+ ..+..+++|++|++++|.+.. ++....        ..+++|
T Consensus       335 ~l~~~~~~--~~~~l~~--L~~L~L~~N~l-~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~--------~~l~~L  401 (520)
T 2z7x_B          335 LLTDTVFE--NCGHLTE--LETLILQMNQL-KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC--------SWTKSL  401 (520)
T ss_dssp             CCCTTTTT--TCCCCSS--CCEEECCSSCC-CBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC--------CCCTTC
T ss_pred             ccChhhhh--hhccCCC--CCEEEccCCcc-CccccchHHHhhCCCCCEEECCCCcCCcccccchh--------ccCccC
Confidence            8776 221  2344444  44566655432 221 11 346788999999999998776 554322        456788


Q ss_pred             ceeeee-----------c-ccceeEEeeccCc------cccccccccceEEeecCc--------ccCCcccccccCCCCC
Q 038551          276 QKVFYK-----------I-LKIEARDMACTCS------QYQACPRGLTKFEEHPLK--------RLECAELKELPLDCNH  329 (366)
Q Consensus       276 ~~L~l~-----------l-~~l~~L~l~~~c~------~l~~~~~~L~~L~l~~~~--------~~~~~~L~~L~l~~n~  329 (366)
                      +.|+++           + ..++.|+++ +|.      .+..+++ |++|++++|+        +..+++|+.|++++|+
T Consensus       402 ~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls-~N~l~~ip~~~~~l~~-L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          402 LSLNMSSNILTDTIFRCLPPRIKVLDLH-SNKIKSIPKQVVKLEA-LQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             CEEECCSSCCCGGGGGSCCTTCCEEECC-SSCCCCCCGGGGGCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEECcCCCCCcchhhhhcccCCEEECC-CCcccccchhhhcCCC-CCEEECCCCcCCccCHHHhccCCcccEEECcCCC
Confidence            888877           1 456778887 662      1223677 9999999998        4568889999999999


Q ss_pred             CCCc
Q 038551          330 GLEQ  333 (366)
Q Consensus       330 ~~~~  333 (366)
                      +.++
T Consensus       480 ~~c~  483 (520)
T 2z7x_B          480 WDCS  483 (520)
T ss_dssp             BCCC
T ss_pred             Cccc
Confidence            8654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.87  E-value=1.6e-20  Score=170.81  Aligned_cols=283  Identities=19%  Similarity=0.176  Sum_probs=200.8

Q ss_pred             CccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCC
Q 038551           13 KENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYN   90 (366)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~   90 (366)
                      ..+.+.+.++++..+|... .++++.|++++|.++.++..  ..+++|++|++++|.+..+.+..+..+++|++|++++|
T Consensus        32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  110 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN  110 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence            4567888888898887532 37999999999999998764  88999999999999999886666999999999999999


Q ss_pred             CCCCCcchhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcccccccC-ccChhhhcCCcCCcEEEeecCCccccc
Q 038551           91 RSLENLPLGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLS-RIPQQVISDLKMLRALRMFECGFNVEL  168 (366)
Q Consensus        91 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~  168 (366)
                       .++.+|..+.  ++|++|++++|.++.++.. +..+++|++|++++|.... ......+.++++|++|++.+|.+..  
T Consensus       111 -~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--  185 (330)
T 1xku_A          111 -QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--  185 (330)
T ss_dssp             -CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS--
T ss_pred             -cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc--
Confidence             6778886654  7999999999999977654 7899999999999954422 1333338889999999999999874  


Q ss_pred             cccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEe
Q 038551          169 EADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQL  248 (366)
Q Consensus       169 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l  248 (366)
                                  .+..+  .++|+.|++++|.+..+.. ..+..+++  ++.|+++.+. +.......+..+++|++|++
T Consensus       186 ------------l~~~~--~~~L~~L~l~~n~l~~~~~-~~~~~l~~--L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L  247 (330)
T 1xku_A          186 ------------IPQGL--PPSLTELHLDGNKITKVDA-ASLKGLNN--LAKLGLSFNS-ISAVDNGSLANTPHLRELHL  247 (330)
T ss_dssp             ------------CCSSC--CTTCSEEECTTSCCCEECT-GGGTTCTT--CCEEECCSSC-CCEECTTTGGGSTTCCEEEC
T ss_pred             ------------CCccc--cccCCEEECCCCcCCccCH-HHhcCCCC--CCEEECCCCc-CceeChhhccCCCCCCEEEC
Confidence                        22222  2789999999998876521 12334444  4445555432 22222234788899999999


Q ss_pred             ccCccceEeccccccccccccCCCCCcceeeeecccceeEEeeccCcc--ccccccccceEEeecCc----------ccC
Q 038551          249 YFNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQ--YQACPRGLTKFEEHPLK----------RLE  316 (366)
Q Consensus       249 ~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~--l~~~~~~L~~L~l~~~~----------~~~  316 (366)
                      ++|.++.++...         ..+++|+.|+++-..+..+.....|..  ....+. ++.|++.+|+          ...
T Consensus       248 ~~N~l~~lp~~l---------~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~-l~~l~l~~N~~~~~~i~~~~f~~  317 (330)
T 1xku_A          248 NNNKLVKVPGGL---------ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS-YSGVSLFSNPVQYWEIQPSTFRC  317 (330)
T ss_dssp             CSSCCSSCCTTT---------TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCC-CSEEECCSSSSCGGGSCGGGGTT
T ss_pred             CCCcCccCChhh---------ccCCCcCEEECCCCcCCccChhhcCCccccccccc-ccceEeecCcccccccCcccccc
Confidence            999888766432         557888888886222221111101110  111466 8999999998          456


Q ss_pred             CcccccccCCCCC
Q 038551          317 CAELKELPLDCNH  329 (366)
Q Consensus       317 ~~~L~~L~l~~n~  329 (366)
                      ++.++.+++++|+
T Consensus       318 ~~~l~~l~L~~N~  330 (330)
T 1xku_A          318 VYVRAAVQLGNYK  330 (330)
T ss_dssp             CCCGGGEEC----
T ss_pred             ccceeEEEecccC
Confidence            7788889988774

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.86  E-value=3.5e-21  Score=173.24  Aligned_cols=222  Identities=26%  Similarity=0.333  Sum_probs=162.3

Q ss_pred             cEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccc---cchhhcCCCCCCEEEccC
Q 038551           15 NFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTV---SNNFFHSMASLRVLILSY   89 (366)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i---~~~~~~~l~~L~~L~l~~   89 (366)
                      ..+.+.+.++..+|. .-.++++.|++++|.++.++..  ..+++|++|++++|.+..+   +.. +..+++|++|++++
T Consensus        10 ~~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           10 TEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSF   87 (306)
T ss_dssp             TEEECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCS
T ss_pred             CEEEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCC
Confidence            467888889999875 2247999999999999998765  7899999999999988755   344 66799999999999


Q ss_pred             CCCCCCcchhhcCCCCCcEEEccccccccccc--cccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcccc
Q 038551           90 NRSLENLPLGIFNLVSLQHLDISWTGITTLPI--ELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVE  167 (366)
Q Consensus        90 ~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  167 (366)
                      | .++.+|..+..+++|++|++++|.++.++.  .+..+++|++|++++|. +...+...+..+++|++|++.+|.+.+ 
T Consensus        88 n-~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-  164 (306)
T 2z66_A           88 N-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQE-  164 (306)
T ss_dssp             C-SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGG-
T ss_pred             C-ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcccc-
Confidence            9 677788888899999999999999987764  58899999999999964 444444448889999999999998863 


Q ss_pred             ccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEE
Q 038551          168 LEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQ  247 (366)
Q Consensus       168 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~  247 (366)
                                 ...+..+..+++|+.|++++|.+..++. ..+..+++  ++.|+++++. ++......+..+++|++|+
T Consensus       165 -----------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~--L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~  229 (306)
T 2z66_A          165 -----------NFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSS--LQVLNMSHNN-FFSLDTFPYKCLNSLQVLD  229 (306)
T ss_dssp             -----------GEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTT--CCEEECTTSC-CSBCCSGGGTTCTTCCEEE
T ss_pred             -----------ccchhHHhhCcCCCEEECCCCCcCCcCH-HHhcCCCC--CCEEECCCCc-cCccChhhccCcccCCEeE
Confidence                       1345667788999999999887765421 01222333  3334444322 1111112255566666666


Q ss_pred             eccCccceE
Q 038551          248 LYFNDLEEL  256 (366)
Q Consensus       248 l~~~~l~~l  256 (366)
                      +++|.+...
T Consensus       230 L~~N~l~~~  238 (306)
T 2z66_A          230 YSLNHIMTS  238 (306)
T ss_dssp             CTTSCCCBC
T ss_pred             CCCCCCccc
Confidence            666665543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.86  E-value=1.3e-20  Score=187.75  Aligned_cols=33  Identities=15%  Similarity=-0.093  Sum_probs=23.4

Q ss_pred             cccccceEEeecCc--------cc-CCcccccccCCCCCCCCc
Q 038551          300 CPRGLTKFEEHPLK--------RL-ECAELKELPLDCNHGLEQ  333 (366)
Q Consensus       300 ~~~~L~~L~l~~~~--------~~-~~~~L~~L~l~~n~~~~~  333 (366)
                      +++ |+.|++++|.        +. .+++|+.|++++|+...+
T Consensus       583 l~~-L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~  624 (680)
T 1ziw_A          583 QVS-LKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT  624 (680)
T ss_dssp             CTT-CCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred             CCC-CCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence            466 8888888777        22 567788888888877544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.86  E-value=7.4e-21  Score=171.13  Aligned_cols=200  Identities=25%  Similarity=0.294  Sum_probs=148.3

Q ss_pred             cEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCc---chhhcCCCCCcEEEccc
Q 038551           37 TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL---PLGIFNLVSLQHLDISW  113 (366)
Q Consensus        37 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l---~~~~~~l~~L~~L~l~~  113 (366)
                      +.++++++.++.+|.. ..+++++|++++|.++.++..+|..+++|++|++++| .++.+   +..+..+++|++|++++
T Consensus        10 ~~l~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             TEEECCSSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             CEEEcCCCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCC
Confidence            5788888899988864 3368999999999999999988899999999999999 55544   56677899999999999


Q ss_pred             cccccccccccCCCCCCEEEcccccccCccCh-hhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccc
Q 038551          114 TGITTLPIELKYLVNLKCLNLEYTFRLSRIPQ-QVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLN  192 (366)
Q Consensus       114 ~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~  192 (366)
                      |.++.+|..+..+++|++|++++| .+..++. ..+..+++|++|++.+|.+..             ..+..+..+++|+
T Consensus        88 n~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~l~~L~  153 (306)
T 2z66_A           88 NGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRV-------------AFNGIFNGLSSLE  153 (306)
T ss_dssp             CSEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEE-------------CSTTTTTTCTTCC
T ss_pred             CccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCc-------------cchhhcccCcCCC
Confidence            999999988999999999999995 5555553 348899999999999999875             4556678889999


Q ss_pred             eeeeccccchh--hHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEe
Q 038551          193 LLTITLQSFGA--LQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELK  257 (366)
Q Consensus       193 ~L~l~~~~~~~--~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~  257 (366)
                      .|++++|.+..  ++.  .+..+++  ++.|+++++. +.......+..+++|++|++++|.++.++
T Consensus       154 ~L~l~~n~l~~~~~~~--~~~~l~~--L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  215 (306)
T 2z66_A          154 VLKMAGNSFQENFLPD--IFTELRN--LTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLD  215 (306)
T ss_dssp             EEECTTCEEGGGEECS--CCTTCTT--CCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred             EEECCCCccccccchh--HHhhCcC--CCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCCccCccC
Confidence            99999987764  221  1222232  3334443321 11111122455566666666666555443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.86  E-value=4.6e-21  Score=173.04  Aligned_cols=154  Identities=15%  Similarity=0.255  Sum_probs=106.1

Q ss_pred             CcccEEEcccCCccc---cCCC-CCCCCccEEEccC-CCCc-cccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCc
Q 038551           34 KETTRMSLMQNAIQN---LTEI-PTCPRLRTLFLPS-NHLG-TVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQ  107 (366)
Q Consensus        34 ~~L~~L~l~~~~~~~---l~~~-~~~~~L~~L~l~~-~~~~-~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~  107 (366)
                      .+++.|+++++.+.+   +|.. ..+++|++|++++ |.+. .+|.. +..+++|++|++++|...+.+|..+.++++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            467778888777764   4544 6777777777774 6664 45544 67777788888777744346777777777778


Q ss_pred             EEEccccccc-cccccccCCCCCCEEEcccccccCccChhhhcCCc-CCcEEEeecCCccccccccccccCCchhhhhhh
Q 038551          108 HLDISWTGIT-TLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLK-MLRALRMFECGFNVELEADSILFGDSEVLVEEL  185 (366)
Q Consensus       108 ~L~l~~~~~~-~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l  185 (366)
                      +|++++|.++ .+|..+..+++|++|++++|...+.+|.. +..++ +|++|++.+|.+.+             ..+..+
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~-------------~~~~~~  194 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTG-------------KIPPTF  194 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEE-------------ECCGGG
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeec-------------cCChHH
Confidence            8888777776 66767777777788877775544466665 66665 77777777777764             444555


Q ss_pred             hcCcccceeeeccccchh
Q 038551          186 LVLKHLNLLTITLQSFGA  203 (366)
Q Consensus       186 ~~l~~L~~L~l~~~~~~~  203 (366)
                      ..++ |+.|++++|.+.+
T Consensus       195 ~~l~-L~~L~Ls~N~l~~  211 (313)
T 1ogq_A          195 ANLN-LAFVDLSRNMLEG  211 (313)
T ss_dssp             GGCC-CSEEECCSSEEEE
T ss_pred             hCCc-ccEEECcCCcccC
Confidence            5555 7777777766553

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.85  E-value=8e-21  Score=172.56  Aligned_cols=224  Identities=25%  Similarity=0.226  Sum_probs=150.5

Q ss_pred             CCccEEEecCCCcccCC-CCCCCCcccEEEcccCCccccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccC
Q 038551           12 EKENFLVLAGVGLTEAP-SIGMWKETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSY   89 (366)
Q Consensus        12 ~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~   89 (366)
                      .....+++.++++..+| .+.++++|++|++++|.++.+|.. ..+++|++|++++|.+..+|.. +..+++|++|++++
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~  159 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRA  159 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEEEEE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH-HhcCcCCCEEECCC
Confidence            45666777777777774 466677777788877777776665 6777777788777777777666 67777788887777


Q ss_pred             CCCCCCcchhhcC---------CCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEee
Q 038551           90 NRSLENLPLGIFN---------LVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMF  160 (366)
Q Consensus        90 ~~~~~~l~~~~~~---------l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  160 (366)
                      |...+.+|..+..         +++|++|++++|.++.+|..+..+++|++|++++ +.+..+|.. +..+++|++|++.
T Consensus       160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~-N~l~~l~~~-l~~l~~L~~L~Ls  237 (328)
T 4fcg_A          160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN-SPLSALGPA-IHHLPKLEELDLR  237 (328)
T ss_dssp             ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEES-SCCCCCCGG-GGGCTTCCEEECT
T ss_pred             CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccC-CCCCcCchh-hccCCCCCEEECc
Confidence            6566667665543         7777778887777777777777777788887777 355566665 6777777778777


Q ss_pred             cCCccccccccccccCCchhhhhhhhcCcccceeeeccccchh-hHhHhhhcccCcccceeeeccccCCCCCcchhhhcc
Q 038551          161 ECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGA-LQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFAS  239 (366)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~  239 (366)
                      +|.+.+             ..+..+..+++|+.|++++|...+ ++..  +.++++  ++.|+++++......+ ..+..
T Consensus       238 ~n~~~~-------------~~p~~~~~l~~L~~L~L~~n~~~~~~p~~--~~~l~~--L~~L~L~~n~~~~~iP-~~l~~  299 (328)
T 4fcg_A          238 GCTALR-------------NYPPIFGGRAPLKRLILKDCSNLLTLPLD--IHRLTQ--LEKLDLRGCVNLSRLP-SLIAQ  299 (328)
T ss_dssp             TCTTCC-------------BCCCCTTCCCCCCEEECTTCTTCCBCCTT--GGGCTT--CCEEECTTCTTCCCCC-GGGGG
T ss_pred             CCcchh-------------hhHHHhcCCCCCCEEECCCCCchhhcchh--hhcCCC--CCEEeCCCCCchhhcc-HHHhh
Confidence            777765             455666777777777777765442 2211  233333  4446666554433333 33677


Q ss_pred             CCcCcEEEeccCccceE
Q 038551          240 LRHLRTLQLYFNDLEEL  256 (366)
Q Consensus       240 ~~~L~~L~l~~~~l~~l  256 (366)
                      +++|+.+++..+.+..+
T Consensus       300 L~~L~~l~l~~~~~~~l  316 (328)
T 4fcg_A          300 LPANCIILVPPHLQAQL  316 (328)
T ss_dssp             SCTTCEEECCGGGSCC-
T ss_pred             ccCceEEeCCHHHHHHH
Confidence            77777777776644433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.85  E-value=7.3e-20  Score=178.40  Aligned_cols=130  Identities=19%  Similarity=0.250  Sum_probs=109.5

Q ss_pred             CCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCc-chhhcCCCCCcEE
Q 038551           31 GMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL-PLGIFNLVSLQHL  109 (366)
Q Consensus        31 ~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L  109 (366)
                      ..+...+.++++++.++.+|... .+++++|++++|.+..+++..|..+++|++|++++| .++.+ |..+.++++|++|
T Consensus        28 ~~~~~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L  105 (562)
T 3a79_B           28 FSNELESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYL  105 (562)
T ss_dssp             -----CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEE
T ss_pred             cccCCCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEE
Confidence            34556689999999999988752 289999999999999998777999999999999999 55555 6779999999999


Q ss_pred             EccccccccccccccCCCCCCEEEcccccccCccC--hhhhcCCcCCcEEEeecCCccc
Q 038551          110 DISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIP--QQVISDLKMLRALRMFECGFNV  166 (366)
Q Consensus       110 ~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~  166 (366)
                      ++++|.++.+|..  .+++|++|++++| .+..++  .. ++++++|++|++.+|.+..
T Consensus       106 ~Ls~N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~-~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          106 DVSHNRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKE-FGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             ECTTSCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGG-GGGCTTCCEEEEECSBCCT
T ss_pred             ECCCCcCCccCcc--ccccCCEEECCCC-CccccCchHh-hcccCcccEEecCCCcccc
Confidence            9999999999987  8999999999995 555544  44 8999999999999998874

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.85  E-value=7.7e-21  Score=174.55  Aligned_cols=228  Identities=18%  Similarity=0.156  Sum_probs=172.7

Q ss_pred             CccEEEecCCCcccCC--CCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEcc
Q 038551           13 KENFLVLAGVGLTEAP--SIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILS   88 (366)
Q Consensus        13 ~~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~   88 (366)
                      ..+.+++.++.+.+++  .+.++++|+.|++++|.++.++..  ..+++|++|++++|.++.+++.++..+++|++|+++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            6778899999999885  499999999999999999997543  889999999999999999998888999999999999


Q ss_pred             CCCCCCCcch--hhcCCCCCcEEEcccc-cccccc-ccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCc
Q 038551           89 YNRSLENLPL--GIFNLVSLQHLDISWT-GITTLP-IELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGF  164 (366)
Q Consensus        89 ~~~~~~~l~~--~~~~l~~L~~L~l~~~-~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  164 (366)
                      +| .++.+|.  .+.++++|++|++++| .++.++ ..+..+++|++|++++|......+.. +..+++|++|++.+|.+
T Consensus       133 ~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l  210 (353)
T 2z80_A          133 GN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS-LKSIQNVSHLILHMKQH  210 (353)
T ss_dssp             TC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSCS
T ss_pred             CC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHH-HhccccCCeecCCCCcc
Confidence            99 6777776  6889999999999999 577665 46899999999999995444433444 88999999999999998


Q ss_pred             cccccccccccCCchhhhhhhhcCcccceeeeccccchhhH--hHhhhcccCcccceeeeccccCCCCCcc---h-hhhc
Q 038551          165 NVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQ--RLLSYCRLGSISTQCLCLRHLNNSNSLS---V-FAFA  238 (366)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~l~~~~~l~~l~l~~L~~~~~~~~~~~~---~-~~l~  238 (366)
                      ..             .....+..+++|+.|++++|.+..++  .+........  +..+++..+. +....   + ..+.
T Consensus       211 ~~-------------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~--l~~l~L~~~~-l~~~~l~~l~~~l~  274 (353)
T 2z80_A          211 IL-------------LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL--IKKFTFRNVK-ITDESLFQVMKLLN  274 (353)
T ss_dssp             TT-------------HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCC--CCEEEEESCB-CCHHHHHHHHHHHH
T ss_pred             cc-------------chhhhhhhcccccEEECCCCccccccccccccccccch--hhcccccccc-ccCcchhhhHHHHh
Confidence            64             33334556899999999999887642  1111111111  2223332221 11111   1 2356


Q ss_pred             cCCcCcEEEeccCccceEec
Q 038551          239 SLRHLRTLQLYFNDLEELKI  258 (366)
Q Consensus       239 ~~~~L~~L~l~~~~l~~l~~  258 (366)
                      .+++|++|++++|.++.++.
T Consensus       275 ~l~~L~~L~Ls~N~l~~i~~  294 (353)
T 2z80_A          275 QISGLLELEFSRNQLKSVPD  294 (353)
T ss_dssp             TCTTCCEEECCSSCCCCCCT
T ss_pred             cccCCCEEECCCCCCCccCH
Confidence            78889999999988886664

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.85  E-value=3.1e-20  Score=175.65  Aligned_cols=245  Identities=19%  Similarity=0.218  Sum_probs=187.5

Q ss_pred             cccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcEEEccc
Q 038551           35 ETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIFNLVSLQHLDISW  113 (366)
Q Consensus        35 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~  113 (366)
                      ..+.++..+..++.+|.. -.++++.|++++|.+..+++..|..+++|++|++++| .++.++ ..+.++++|++|++++
T Consensus        44 ~~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             TSCEEECCSCCCSSCCSC-CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCCEEEeCCCCcCcCCCC-CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCC
Confidence            457889989999988865 2368999999999999988777999999999999999 555554 6789999999999999


Q ss_pred             cccccccc-cccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccc
Q 038551          114 TGITTLPI-ELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLN  192 (366)
Q Consensus       114 ~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~  192 (366)
                      |.++.++. .+..+++|++|++++ +.+..++...+.++++|++|++.+|....            ......+..+++|+
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~l~~~~~l~------------~i~~~~~~~l~~L~  188 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRN-NPIESIPSYAFNRIPSLRRLDLGELKRLS------------YISEGAFEGLSNLR  188 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCC------------EECTTTTTTCSSCC
T ss_pred             CcCCeeCHhHhhccccCceeeCCC-CcccccCHHHhhhCcccCEeCCCCCCCcc------------eeCcchhhcccccC
Confidence            99998887 489999999999999 56777877668999999999999965443            13334677899999


Q ss_pred             eeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccccccccccCCC
Q 038551          193 LLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGF  272 (366)
Q Consensus       193 ~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~  272 (366)
                      .|++++|.+..++.+..   +.+  ++.|+++++ .+.......+.++++|++|++++|.++.++...+        ..+
T Consensus       189 ~L~L~~n~l~~~~~~~~---l~~--L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--------~~l  254 (440)
T 3zyj_A          189 YLNLAMCNLREIPNLTP---LIK--LDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF--------DNL  254 (440)
T ss_dssp             EEECTTSCCSSCCCCTT---CSS--CCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSS--------TTC
T ss_pred             eecCCCCcCccccccCC---Ccc--cCEEECCCC-ccCccChhhhccCccCCEEECCCCceeEEChhhh--------cCC
Confidence            99999999988776443   344  444666554 2232322347889999999999999998876544        567


Q ss_pred             CCcceeeeecccceeEEeeccCccccccccccceEEeecCc
Q 038551          273 HSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLK  313 (366)
Q Consensus       273 ~~L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~  313 (366)
                      ++|+.|+++-..+..+.    -..+..+++ |+.|+|++|+
T Consensus       255 ~~L~~L~L~~N~l~~~~----~~~~~~l~~-L~~L~L~~Np  290 (440)
T 3zyj_A          255 QSLVEINLAHNNLTLLP----HDLFTPLHH-LERIHLHHNP  290 (440)
T ss_dssp             TTCCEEECTTSCCCCCC----TTTTSSCTT-CCEEECCSSC
T ss_pred             CCCCEEECCCCCCCccC----hhHhccccC-CCEEEcCCCC
Confidence            88888877622222111    112333677 8999999888

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.85  E-value=2.8e-20  Score=176.52  Aligned_cols=245  Identities=18%  Similarity=0.175  Sum_probs=185.0

Q ss_pred             cccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCc-chhhcCCCCCcEEEccc
Q 038551           35 ETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL-PLGIFNLVSLQHLDISW  113 (366)
Q Consensus        35 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~  113 (366)
                      ..+.++..+..++.+|.. -.+++++|++++|.+..+++..|..+++|++|++++| .++.+ +..+.++++|++|++++
T Consensus        55 ~~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SSCEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCcEEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCC
Confidence            357888888889888864 2368999999999999887777999999999999999 55554 46789999999999999


Q ss_pred             ccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccc
Q 038551          114 TGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLN  192 (366)
Q Consensus       114 ~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~  192 (366)
                      |.++.+|.. +..+++|++|++++ +.+..++...+.++++|++|++.+|....            ......+..+++|+
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~~~~l~------------~i~~~~~~~l~~L~  199 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRN-NPIESIPSYAFNRVPSLMRLDLGELKKLE------------YISEGAFEGLFNLK  199 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCC------------EECTTTTTTCTTCC
T ss_pred             CcCCccChhhhcccCCCCEEECCC-CCcceeCHhHHhcCCcccEEeCCCCCCcc------------ccChhhccCCCCCC
Confidence            999988875 88999999999999 56778887668999999999999965443            13334577899999


Q ss_pred             eeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccccccccccCCC
Q 038551          193 LLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGF  272 (366)
Q Consensus       193 ~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~  272 (366)
                      .|++++|.+..++.+..   +.+  ++.|+++++. +.......+.++++|++|++++|.++.+....+        ..+
T Consensus       200 ~L~L~~n~l~~~~~~~~---l~~--L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--------~~l  265 (452)
T 3zyi_A          200 YLNLGMCNIKDMPNLTP---LVG--LEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF--------DGL  265 (452)
T ss_dssp             EEECTTSCCSSCCCCTT---CTT--CCEEECTTSC-CSEECGGGGTTCTTCCEEECTTSCCCEECTTTT--------TTC
T ss_pred             EEECCCCcccccccccc---ccc--ccEEECcCCc-CcccCcccccCccCCCEEEeCCCcCceECHHHh--------cCC
Confidence            99999999988765443   343  4445555432 222222347889999999999999988765443        557


Q ss_pred             CCcceeeeecccceeEEeeccCccccccccccceEEeecCc
Q 038551          273 HSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLK  313 (366)
Q Consensus       273 ~~L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~  313 (366)
                      ++|+.|+++-..+..+.    ...+..+++ |+.|+|++|+
T Consensus       266 ~~L~~L~L~~N~l~~~~----~~~~~~l~~-L~~L~L~~Np  301 (452)
T 3zyi_A          266 ASLVELNLAHNNLSSLP----HDLFTPLRY-LVELHLHHNP  301 (452)
T ss_dssp             TTCCEEECCSSCCSCCC----TTSSTTCTT-CCEEECCSSC
T ss_pred             CCCCEEECCCCcCCccC----hHHhccccC-CCEEEccCCC
Confidence            88888877522221111    112233667 8888888887

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.84  E-value=6.8e-20  Score=179.26  Aligned_cols=256  Identities=20%  Similarity=0.165  Sum_probs=187.2

Q ss_pred             eccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEE
Q 038551            7 STINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLI   86 (366)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~   86 (366)
                      |.|.....+.+++.++++..+|.... ++|+.|++++|.++.+|.  .+++|++|++++|.++.+|.    .+++|++|+
T Consensus        35 ~~c~~~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~  107 (622)
T 3g06_A           35 RACLNNGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELS  107 (622)
T ss_dssp             HHHHHHCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEE
T ss_pred             ccccCCCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEE
Confidence            55666678899999999999975333 899999999999998887  68999999999999998886    579999999


Q ss_pred             ccCCCCCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccc
Q 038551           87 LSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV  166 (366)
Q Consensus        87 l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  166 (366)
                      +++| .++.+|.   .+++|++|++++|.++.+|..   +++|++|++++| .+..+|.    .+.+|+.|++.+|.+..
T Consensus       108 Ls~N-~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~~  175 (622)
T 3g06_A          108 IFSN-PLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLTS  175 (622)
T ss_dssp             ECSC-CCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSC
T ss_pred             CcCC-cCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCCC
Confidence            9999 7777776   568999999999999998864   589999999994 6666664    34679999999998874


Q ss_pred             cccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEE
Q 038551          167 ELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTL  246 (366)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L  246 (366)
                                    ++   ..+++|+.|++++|.+..++..  ..     .+..|.+.++.- +..+    ..+++|++|
T Consensus       176 --------------l~---~~~~~L~~L~Ls~N~l~~l~~~--~~-----~L~~L~L~~N~l-~~l~----~~~~~L~~L  226 (622)
T 3g06_A          176 --------------LP---MLPSGLQELSVSDNQLASLPTL--PS-----ELYKLWAYNNRL-TSLP----ALPSGLKEL  226 (622)
T ss_dssp             --------------CC---CCCTTCCEEECCSSCCSCCCCC--CT-----TCCEEECCSSCC-SSCC----CCCTTCCEE
T ss_pred             --------------Cc---ccCCCCcEEECCCCCCCCCCCc--cc-----hhhEEECcCCcc-cccC----CCCCCCCEE
Confidence                          22   4468899999999988876542  22     244455554322 2111    124788999


Q ss_pred             EeccCccceEeccccccccccccCCCCCcceeeeecccceeEEeeccCccccccccccceEEeecCc-------ccCCcc
Q 038551          247 QLYFNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLK-------RLECAE  319 (366)
Q Consensus       247 ~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~-------~~~~~~  319 (366)
                      ++++|.++.++            ..+++|+.|+++-..+..  +. .     .+++ |+.|++++|.       +..+++
T Consensus       227 ~Ls~N~L~~lp------------~~l~~L~~L~Ls~N~L~~--lp-~-----~~~~-L~~L~Ls~N~L~~lp~~l~~l~~  285 (622)
T 3g06_A          227 IVSGNRLTSLP------------VLPSELKELMVSGNRLTS--LP-M-----LPSG-LLSLSVYRNQLTRLPESLIHLSS  285 (622)
T ss_dssp             ECCSSCCSCCC------------CCCTTCCEEECCSSCCSC--CC-C-----CCTT-CCEEECCSSCCCSCCGGGGGSCT
T ss_pred             EccCCccCcCC------------CCCCcCcEEECCCCCCCc--CC-c-----cccc-CcEEeCCCCCCCcCCHHHhhccc
Confidence            99888887665            345777777775211110  11 0     1344 7777777666       456667


Q ss_pred             cccccCCCCCCC
Q 038551          320 LKELPLDCNHGL  331 (366)
Q Consensus       320 L~~L~l~~n~~~  331 (366)
                      |+.|++++|++.
T Consensus       286 L~~L~L~~N~l~  297 (622)
T 3g06_A          286 ETTVNLEGNPLS  297 (622)
T ss_dssp             TCEEECCSCCCC
T ss_pred             cCEEEecCCCCC
Confidence            777777777665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.84  E-value=2e-19  Score=170.48  Aligned_cols=277  Identities=21%  Similarity=0.187  Sum_probs=162.2

Q ss_pred             CCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCC
Q 038551           12 EKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR   91 (366)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~   91 (366)
                      ...+.+++.++++.++|.+  .++|+.|++++|.++.+|.  ..++|++|++++|.+..++..    .++|++|++++| 
T Consensus        71 ~~l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n-  141 (454)
T 1jl5_A           71 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNN-  141 (454)
T ss_dssp             HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSS-
T ss_pred             cCCCEEEecCCccccCCCC--cCCCCEEEccCCcCCcccc--ccCCCcEEECCCCccCcccCC----CCCCCEEECcCC-
Confidence            3456778888888777664  3678888888887777664  346677777777766665532    256777777777 


Q ss_pred             CCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcccccccc
Q 038551           92 SLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEAD  171 (366)
Q Consensus        92 ~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  171 (366)
                      .++.+| .++++++|++|++++|.++.+|..   ..+|++|++++| .+..+| . +.++++|++|++.+|.+.+.....
T Consensus       142 ~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n-~l~~l~-~-~~~l~~L~~L~l~~N~l~~l~~~~  214 (454)
T 1jl5_A          142 QLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNN-QLEELP-E-LQNLPFLTAIYADNNSLKKLPDLP  214 (454)
T ss_dssp             CCSSCC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSSCC-C-CTTCTTCCEEECCSSCCSSCCCCC
T ss_pred             CCCCCc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCC-cCCcCc-c-ccCCCCCCEEECCCCcCCcCCCCc
Confidence            455566 366777777777777776666643   246777777763 444455 2 666667777777666665311000


Q ss_pred             c-c-----ccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcE
Q 038551          172 S-I-----LFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRT  245 (366)
Q Consensus       172 ~-~-----~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~  245 (366)
                      . .     ........+ .+..+++|+.|++++|.+.+++..  .   .  .++.|++..+.- ...+    ...++|++
T Consensus       215 ~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~--~---~--~L~~L~l~~N~l-~~l~----~~~~~L~~  281 (454)
T 1jl5_A          215 LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDL--P---P--SLEALNVRDNYL-TDLP----ELPQSLTF  281 (454)
T ss_dssp             TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCSC--C---T--TCCEEECCSSCC-SCCC----CCCTTCCE
T ss_pred             CcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCccccc--c---c--ccCEEECCCCcc-cccC----cccCcCCE
Confidence            0 0     000000111 255666666677766666554431  1   1  234444443321 1111    11356777


Q ss_pred             EEeccCccceEeccccccccccccCCCCCcceeeee---------c-ccceeEEeeccCccccc----cccccceEEeec
Q 038551          246 LQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYK---------I-LKIEARDMACTCSQYQA----CPRGLTKFEEHP  311 (366)
Q Consensus       246 L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~---------l-~~l~~L~l~~~c~~l~~----~~~~L~~L~l~~  311 (366)
                      |++++|.++.++            ...++|+.|+++         + .+++.|+++ ++ .++.    +++ |++|++++
T Consensus       282 L~ls~N~l~~l~------------~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls-~N-~l~~lp~~~~~-L~~L~L~~  346 (454)
T 1jl5_A          282 LDVSENIFSGLS------------ELPPNLYYLNASSNEIRSLCDLPPSLEELNVS-NN-KLIELPALPPR-LERLIASF  346 (454)
T ss_dssp             EECCSSCCSEES------------CCCTTCCEEECCSSCCSEECCCCTTCCEEECC-SS-CCSCCCCCCTT-CCEEECCS
T ss_pred             EECcCCccCccc------------CcCCcCCEEECcCCcCCcccCCcCcCCEEECC-CC-ccccccccCCc-CCEEECCC
Confidence            777777666553            112566666665         1 345667776 55 2333    455 88888888


Q ss_pred             Cccc----CCcccccccCCCCCCCC
Q 038551          312 LKRL----ECAELKELPLDCNHGLE  332 (366)
Q Consensus       312 ~~~~----~~~~L~~L~l~~n~~~~  332 (366)
                      |.+.    .+++|+.|++++|++.+
T Consensus       347 N~l~~lp~~l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          347 NHLAEVPELPQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             SCCSCCCCCCTTCCEEECCSSCCSS
T ss_pred             CccccccchhhhccEEECCCCCCCc
Confidence            8722    45678889999888865

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.83  E-value=1.2e-19  Score=160.29  Aligned_cols=198  Identities=27%  Similarity=0.378  Sum_probs=159.2

Q ss_pred             CccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCC
Q 038551           13 KENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYN   90 (366)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~   90 (366)
                      ..+.+++.++++..+|... .++++.|++++|.+..++..  ..+++|++|++++|.+..+++.+|..+++|++|++++|
T Consensus        17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n   95 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN   95 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred             CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence            4578899999999987532 27899999999999998753  78999999999999999999887889999999999999


Q ss_pred             CCCCCcc-hhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccc
Q 038551           91 RSLENLP-LGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVEL  168 (366)
Q Consensus        91 ~~~~~l~-~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  168 (366)
                       .++.+| ..+.++++|++|++++|.++.++.. +..+++|++|++++ +.+..++...+..+++|++|++.+|.+..  
T Consensus        96 -~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--  171 (270)
T 2o6q_A           96 -KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYNNQLKR--  171 (270)
T ss_dssp             -CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSC--
T ss_pred             -cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccceeEecCCcCcE--
Confidence             566665 4568899999999999999977754 78999999999999 56777777668899999999999998875  


Q ss_pred             cccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEe
Q 038551          169 EADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQL  248 (366)
Q Consensus       169 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l  248 (366)
                                 .....+..+++|+.|++++|.+..++.                            ..+..+++|+.|++
T Consensus       172 -----------~~~~~~~~l~~L~~L~L~~N~l~~~~~----------------------------~~~~~l~~L~~L~l  212 (270)
T 2o6q_A          172 -----------VPEGAFDKLTELKTLKLDNNQLKRVPE----------------------------GAFDSLEKLKMLQL  212 (270)
T ss_dssp             -----------CCTTTTTTCTTCCEEECCSSCCSCCCT----------------------------TTTTTCTTCCEEEC
T ss_pred             -----------eChhHhccCCCcCEEECCCCcCCcCCH----------------------------HHhccccCCCEEEe
Confidence                       334456778888888888776654321                            11455677788888


Q ss_pred             ccCccc
Q 038551          249 YFNDLE  254 (366)
Q Consensus       249 ~~~~l~  254 (366)
                      ++|.+.
T Consensus       213 ~~N~~~  218 (270)
T 2o6q_A          213 QENPWD  218 (270)
T ss_dssp             CSSCBC
T ss_pred             cCCCee
Confidence            777654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.83  E-value=3.5e-19  Score=168.75  Aligned_cols=143  Identities=19%  Similarity=0.255  Sum_probs=73.6

Q ss_pred             cccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcccc
Q 038551           35 ETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWT  114 (366)
Q Consensus        35 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~  114 (366)
                      +|+.|++++|.++.+|....+++|++|++++|.+..+|..    .++|++|++++| .++.+| .++++++|++|++++|
T Consensus       132 ~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNN  205 (454)
T ss_dssp             TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS
T ss_pred             CCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCC-cCCcCc-cccCCCCCCEEECCCC
Confidence            4444444444444444334444444444444444443332    124444444444 333344 2455555555555555


Q ss_pred             ccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCccccee
Q 038551          115 GITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLL  194 (366)
Q Consensus       115 ~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  194 (366)
                      .++.+|..   .++|++|++++| .+..+|.  +..+++|++|++.+|.+.+              .+.   .++.|+.|
T Consensus       206 ~l~~l~~~---~~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~~--------------l~~---~~~~L~~L  262 (454)
T 1jl5_A          206 SLKKLPDL---PLSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLKT--------------LPD---LPPSLEAL  262 (454)
T ss_dssp             CCSSCCCC---CTTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSS--------------CCS---CCTTCCEE
T ss_pred             cCCcCCCC---cCcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCCc--------------ccc---cccccCEE
Confidence            55544432   235666666653 4445553  6677777777777777653              111   13567777


Q ss_pred             eeccccchhhHh
Q 038551          195 TITLQSFGALQR  206 (366)
Q Consensus       195 ~l~~~~~~~~~~  206 (366)
                      ++++|.+.+++.
T Consensus       263 ~l~~N~l~~l~~  274 (454)
T 1jl5_A          263 NVRDNYLTDLPE  274 (454)
T ss_dssp             ECCSSCCSCCCC
T ss_pred             ECCCCcccccCc
Confidence            777777666543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.83  E-value=2.3e-19  Score=158.86  Aligned_cols=222  Identities=22%  Similarity=0.204  Sum_probs=162.8

Q ss_pred             ccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCC
Q 038551           14 ENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR   91 (366)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~   91 (366)
                      ...+.+.+.++..+|.-- .++++.|++++|.++.++..  ..+++|++|++++|.+..+++..+..+++|++|++++| 
T Consensus         9 ~~~~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-   86 (276)
T 2z62_A            9 NITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-   86 (276)
T ss_dssp             TTEEECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-
T ss_pred             CceEEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-
Confidence            346778888888887522 26899999999999998753  88999999999999999988877999999999999999 


Q ss_pred             CCCCcc-hhhcCCCCCcEEEccccccccccc-cccCCCCCCEEEcccccccCc--cChhhhcCCcCCcEEEeecCCcccc
Q 038551           92 SLENLP-LGIFNLVSLQHLDISWTGITTLPI-ELKYLVNLKCLNLEYTFRLSR--IPQQVISDLKMLRALRMFECGFNVE  167 (366)
Q Consensus        92 ~~~~l~-~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~  167 (366)
                      .++.++ ..+.++++|++|++++|.+..++. .+..+++|++|++++| .+..  +|.. +.++++|++|++.+|.+...
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A           87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCCEE
T ss_pred             ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchh-hccCCCCCEEECCCCCCCcC
Confidence            555544 678999999999999999987776 5899999999999995 5544  4655 88999999999999998851


Q ss_pred             ccccccccCCchhhhhhhhcCcccc-eeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEE
Q 038551          168 LEADSILFGDSEVLVEELLVLKHLN-LLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTL  246 (366)
Q Consensus       168 ~~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L  246 (366)
                      .          ...+..+..++.|. .|++++|.+..++...  ....  .++.|+++++. ++..+...+..+++|++|
T Consensus       165 ~----------~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~--~~~~--~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L  229 (276)
T 2z62_A          165 Y----------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA--FKEI--RLKELALDTNQ-LKSVPDGIFDRLTSLQKI  229 (276)
T ss_dssp             C----------GGGGHHHHTCTTCCEEEECCSSCCCEECTTS--SCSC--CEEEEECCSSC-CSCCCTTTTTTCCSCCEE
T ss_pred             C----------HHHhhhhhhccccceeeecCCCcccccCccc--cCCC--cccEEECCCCc-eeecCHhHhcccccccEE
Confidence            0          12233444444444 7888888777654211  1111  34555555433 222222335667777777


Q ss_pred             EeccCccc
Q 038551          247 QLYFNDLE  254 (366)
Q Consensus       247 ~l~~~~l~  254 (366)
                      ++++|.+.
T Consensus       230 ~l~~N~~~  237 (276)
T 2z62_A          230 WLHTNPWD  237 (276)
T ss_dssp             ECCSSCBC
T ss_pred             EccCCccc
Confidence            77777665

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.82  E-value=8.9e-20  Score=158.08  Aligned_cols=215  Identities=14%  Similarity=0.244  Sum_probs=161.0

Q ss_pred             eccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCC-CccccchhhcCCCCCC
Q 038551            7 STINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNH-LGTVSNNFFHSMASLR   83 (366)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~-~~~i~~~~~~~l~~L~   83 (366)
                      |.|.......+.+.+  +..+|.  -.++++.|++++|.++.++..  ..+++|++|++++|. ++.+++..|..+++|+
T Consensus         8 C~C~~~~~~~v~c~~--l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~   83 (239)
T 2xwt_C            8 CECHQEEDFRVTCKD--IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVT   83 (239)
T ss_dssp             CSEEECSTTEEEECS--CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCC
T ss_pred             CeeCCCCcceeEccC--ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCc
Confidence            665542344455654  778877  335899999999999998764  789999999999996 8999887789999999


Q ss_pred             EEEccC-CCCCCCcc-hhhcCCCCCcEEEccccccccccccccCCCCCC---EEEcccccccCccChhhhcCCcCCc-EE
Q 038551           84 VLILSY-NRSLENLP-LGIFNLVSLQHLDISWTGITTLPIELKYLVNLK---CLNLEYTFRLSRIPQQVISDLKMLR-AL  157 (366)
Q Consensus        84 ~L~l~~-~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~---~L~l~~~~~~~~~~~~~~~~~~~L~-~L  157 (366)
                      +|++++ | .++.++ ..+.++++|++|++++|.++.+|. +..+++|+   +|++++|..+..++...+.++++|+ +|
T Consensus        84 ~L~l~~~n-~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L  161 (239)
T 2xwt_C           84 HIEIRNTR-NLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTL  161 (239)
T ss_dssp             EEEEEEET-TCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEE
T ss_pred             EEECCCCC-CeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEE
Confidence            999998 7 666666 467889999999999999998887 78888888   9999995478888876688899999 99


Q ss_pred             EeecCCccccccccccccCCchhhhhhhhcCcccceeeecccc-chhhHhHhhhcccCcccceeeeccccCCCCCcchhh
Q 038551          158 RMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQS-FGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFA  236 (366)
Q Consensus       158 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~  236 (366)
                      ++.+|.+..              .+......++|+.|++++|. +..++                            ...
T Consensus       162 ~l~~n~l~~--------------i~~~~~~~~~L~~L~L~~n~~l~~i~----------------------------~~~  199 (239)
T 2xwt_C          162 KLYNNGFTS--------------VQGYAFNGTKLDAVYLNKNKYLTVID----------------------------KDA  199 (239)
T ss_dssp             ECCSCCCCE--------------ECTTTTTTCEEEEEECTTCTTCCEEC----------------------------TTT
T ss_pred             EcCCCCCcc--------------cCHhhcCCCCCCEEEcCCCCCcccCC----------------------------HHH
Confidence            999998863              11222222567777776653 33221                            112


Q ss_pred             hccC-CcCcEEEeccCccceEeccccccccccccCCCCCcceeee
Q 038551          237 FASL-RHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFY  280 (366)
Q Consensus       237 l~~~-~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l  280 (366)
                      +..+ ++|++|++++|.++.++.           ..+++|+.|++
T Consensus       200 ~~~l~~~L~~L~l~~N~l~~l~~-----------~~~~~L~~L~l  233 (239)
T 2xwt_C          200 FGGVYSGPSLLDVSQTSVTALPS-----------KGLEHLKELIA  233 (239)
T ss_dssp             TTTCSBCCSEEECTTCCCCCCCC-----------TTCTTCSEEEC
T ss_pred             hhccccCCcEEECCCCccccCCh-----------hHhccCceeec
Confidence            5566 788889998888887654           33666666655

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.82  E-value=2.7e-19  Score=159.27  Aligned_cols=201  Identities=22%  Similarity=0.274  Sum_probs=147.0

Q ss_pred             cEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCc-chhhcCCCCCcEEEccccc
Q 038551           37 TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL-PLGIFNLVSLQHLDISWTG  115 (366)
Q Consensus        37 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~  115 (366)
                      +.++.+++.++.+|.. ..++|+.|++++|.+..+++..+..+++|++|++++| .++.+ |..+.++++|++|++++|.
T Consensus        14 ~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             CEEECCSSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCcCCcccCCcC-CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCC
Confidence            6788888899888753 3569999999999999998877999999999999999 55555 6778999999999999996


Q ss_pred             -cccc-cccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccce
Q 038551          116 -ITTL-PIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNL  193 (366)
Q Consensus       116 -~~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  193 (366)
                       ++.+ |..+..+++|++|++++| .+..++...+.++++|++|++.+|.+..             .....+..+++|+.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~l~~L~~  157 (285)
T 1ozn_A           92 QLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQA-------------LPDDTFRDLGNLTH  157 (285)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCC-------------CCTTTTTTCTTCCE
T ss_pred             CccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCcccc-------------cCHhHhccCCCccE
Confidence             8877 556899999999999995 5556655458899999999999999875             44455778899999


Q ss_pred             eeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEe
Q 038551          194 LTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELK  257 (366)
Q Consensus       194 L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~  257 (366)
                      |++++|.+..++.- .+..+++  ++.|++.++. +.......+..+++|++|++++|.++.++
T Consensus       158 L~l~~n~l~~~~~~-~~~~l~~--L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  217 (285)
T 1ozn_A          158 LFLHGNRISSVPER-AFRGLHS--LDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (285)
T ss_dssp             EECCSSCCCEECTT-TTTTCTT--CCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             EECCCCcccccCHH-HhcCccc--cCEEECCCCc-ccccCHhHccCcccccEeeCCCCcCCcCC
Confidence            99999877754421 0222222  2233333321 11111122555566666666666555443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.81  E-value=1.8e-19  Score=162.17  Aligned_cols=206  Identities=20%  Similarity=0.240  Sum_probs=157.7

Q ss_pred             CCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhc
Q 038551           22 VGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF  101 (366)
Q Consensus        22 ~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~  101 (366)
                      ..+.++.....+++|+.|++.++.+..++....+++|++|++++|.+..+++  +..+++|++|++++| .++.++ .+.
T Consensus        29 ~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~-~~~  104 (308)
T 1h6u_A           29 SNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS-AIA  104 (308)
T ss_dssp             SSTTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GGT
T ss_pred             CCcCceecHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCch-hhc
Confidence            3344444455678899999999999888766788999999999999988877  788999999999999 567666 488


Q ss_pred             CCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhh
Q 038551          102 NLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVL  181 (366)
Q Consensus       102 ~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  181 (366)
                      .+++|++|++++|.++.++. +..+++|++|++++ +.+..++.  +..+++|++|++.+|.+.+             . 
T Consensus       105 ~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~l~~n~l~~-------------~-  166 (308)
T 1h6u_A          105 GLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDL-NQITNISP--LAGLTNLQYLSIGNAQVSD-------------L-  166 (308)
T ss_dssp             TCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GGGCTTCCEEECCSSCCCC-------------C-
T ss_pred             CCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCC-CccCcCcc--ccCCCCccEEEccCCcCCC-------------C-
Confidence            89999999999999988775 88899999999998 46666655  7788999999999998874             1 


Q ss_pred             hhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEec
Q 038551          182 VEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKI  258 (366)
Q Consensus       182 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~  258 (366)
                       ..+..+++|+.|++++|.+..++.+..+++     ++.|+++++.- ....  .+..+++|+.|++++|.++..+.
T Consensus       167 -~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~-----L~~L~L~~N~l-~~~~--~l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          167 -TPLANLSKLTTLKADDNKISDISPLASLPN-----LIEVHLKNNQI-SDVS--PLANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             -GGGTTCTTCCEEECCSSCCCCCGGGGGCTT-----CCEEECTTSCC-CBCG--GGTTCTTCCEEEEEEEEEECCCE
T ss_pred             -hhhcCCCCCCEEECCCCccCcChhhcCCCC-----CCEEEccCCcc-Cccc--cccCCCCCCEEEccCCeeecCCe
Confidence             127788899999999988887766443333     44455555432 2222  26778888888888887776543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.81  E-value=2.2e-20  Score=168.93  Aligned_cols=197  Identities=17%  Similarity=0.122  Sum_probs=114.4

Q ss_pred             CCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcE
Q 038551           31 GMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQH  108 (366)
Q Consensus        31 ~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~  108 (366)
                      ..+++|+.|++++|.++.+++.  ..+++|++|++++|.+..+++  +..+++|++|++++| .++.++    ..++|++
T Consensus        31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~----~~~~L~~  103 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELL----VGPSIET  103 (317)
T ss_dssp             TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS-EEEEEE----ECTTCCE
T ss_pred             ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC-cccccc----CCCCcCE
Confidence            3455777777777777765532  667777777777777765554  666777777777777 444443    2367777


Q ss_pred             EEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhh-hc
Q 038551          109 LDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEEL-LV  187 (366)
Q Consensus       109 L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l-~~  187 (366)
                      |++++|.++.++..  .+++|++|++++ +.+..++...+..+++|++|++++|.+..             ..+..+ ..
T Consensus       104 L~l~~n~l~~~~~~--~~~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------~~~~~~~~~  167 (317)
T 3o53_A          104 LHAANNNISRVSCS--RGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDT-------------VNFAELAAS  167 (317)
T ss_dssp             EECCSSCCSEEEEC--CCSSCEEEECCS-SCCCSGGGBCTGGGSSEEEEECTTSCCCE-------------EEGGGGGGG
T ss_pred             EECCCCccCCcCcc--ccCCCCEEECCC-CCCCCccchhhhccCCCCEEECCCCCCCc-------------ccHHHHhhc
Confidence            77777777655532  356677777777 34444444336666777777777777664             223333 35


Q ss_pred             CcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEe
Q 038551          188 LKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELK  257 (366)
Q Consensus       188 l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~  257 (366)
                      +++|+.|++++|.+..++....   +++  ++.|+++++.- ...+ ..+..+++|++|++++|.++.++
T Consensus       168 l~~L~~L~L~~N~l~~~~~~~~---l~~--L~~L~Ls~N~l-~~l~-~~~~~l~~L~~L~L~~N~l~~l~  230 (317)
T 3o53_A          168 SDTLEHLNLQYNFIYDVKGQVV---FAK--LKTLDLSSNKL-AFMG-PEFQSAAGVTWISLRNNKLVLIE  230 (317)
T ss_dssp             TTTCCEEECTTSCCCEEECCCC---CTT--CCEEECCSSCC-CEEC-GGGGGGTTCSEEECTTSCCCEEC
T ss_pred             cCcCCEEECCCCcCcccccccc---ccc--CCEEECCCCcC-Ccch-hhhcccCcccEEECcCCcccchh
Confidence            6677777777776665533222   222  33344433221 1111 12455566666666666555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.81  E-value=6.4e-21  Score=172.06  Aligned_cols=251  Identities=16%  Similarity=0.094  Sum_probs=167.7

Q ss_pred             CCCCCcccEEEcccCCccccCCC-CCCCCccEEEccCCCCcc--ccchhhc-------CCCCCCEEEccCCCCCCCcchh
Q 038551           30 IGMWKETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLGT--VSNNFFH-------SMASLRVLILSYNRSLENLPLG   99 (366)
Q Consensus        30 ~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~--i~~~~~~-------~l~~L~~L~l~~~~~~~~l~~~   99 (366)
                      ++..++|+.|++.+|.+ .+|.. ...  |+.|++++|.+..  ++.. +.       .+++|++|++++|...+.+|..
T Consensus        39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSR-ILFGALRVLGISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred             EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHH-HHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence            34456788888888888 65543 222  8888888887743  4544 33       6899999999999555577876


Q ss_pred             h--cCCCCCcEEEccccccccccccccCC-----CCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccc
Q 038551          100 I--FNLVSLQHLDISWTGITTLPIELKYL-----VNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADS  172 (366)
Q Consensus       100 ~--~~l~~L~~L~l~~~~~~~l~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  172 (366)
                      +  ..+++|++|++++|.++.+|..+..+     ++|++|++++| .+..++...+.++++|++|++++|.+.+      
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------  187 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELG------  187 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCH------
T ss_pred             HHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCc------
Confidence            5  88999999999999998777766666     89999999984 5566664448899999999999998764      


Q ss_pred             cccCCchhhhhhh--hcCcccceeeeccccchhhHhHhh--hcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEe
Q 038551          173 ILFGDSEVLVEEL--LVLKHLNLLTITLQSFGALQRLLS--YCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQL  248 (366)
Q Consensus       173 ~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~l~~--~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l  248 (366)
                           ....+..+  ..+++|+.|++++|.+..++.+..  ...+++  ++.|++++..-....+...+..+++|++|++
T Consensus       188 -----~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~--L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L  260 (312)
T 1wwl_A          188 -----ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQ--LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL  260 (312)
T ss_dssp             -----HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCC--CSEEECTTSCCCSSCCCSCCCCCTTCCEEEC
T ss_pred             -----chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCC--CCEEECCCCcCCcccchhhhhhcCCCCEEEC
Confidence                 11234444  788999999999998886544321  123344  4445554433222111122456788888888


Q ss_pred             ccCccceEeccccccccccccCCCCCcceeeeecccceeEEeeccCccccccccccceEEeecCcccCCcccccccCCCC
Q 038551          249 YFNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLKRLECAELKELPLDCN  328 (366)
Q Consensus       249 ~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~~~~~~~L~~L~l~~n  328 (366)
                      ++|.++.++...           +++|+.|++          + ++ .++..|.           +..+++|+.|++++|
T Consensus       261 s~N~l~~ip~~~-----------~~~L~~L~L----------s-~N-~l~~~p~-----------~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          261 SFTGLKQVPKGL-----------PAKLSVLDL----------S-YN-RLDRNPS-----------PDELPQVGNLSLKGN  306 (312)
T ss_dssp             TTSCCSSCCSSC-----------CSEEEEEEC----------C-SS-CCCSCCC-----------TTTSCEEEEEECTTC
T ss_pred             CCCccChhhhhc-----------cCCceEEEC----------C-CC-CCCCChh-----------HhhCCCCCEEeccCC
Confidence            888877655211           144555444          3 22 3332332           456777888888888


Q ss_pred             CCCC
Q 038551          329 HGLE  332 (366)
Q Consensus       329 ~~~~  332 (366)
                      ++.+
T Consensus       307 ~l~~  310 (312)
T 1wwl_A          307 PFLD  310 (312)
T ss_dssp             TTTC
T ss_pred             CCCC
Confidence            7754

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.80  E-value=8.1e-19  Score=156.51  Aligned_cols=155  Identities=20%  Similarity=0.192  Sum_probs=81.7

Q ss_pred             CCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEc
Q 038551           32 MWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDI  111 (366)
Q Consensus        32 ~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l  111 (366)
                      ++++++.+++.++.++.+|.. -.++++.|++++|.++.+++..+..+++|++|++++| .++.++.. ..+++|++|++
T Consensus         8 ~l~~l~~l~~~~~~l~~ip~~-~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~L   84 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTALPPD-LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDL   84 (290)
T ss_dssp             CSTTCCEEECTTSCCSSCCSC-CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEEC
T ss_pred             ccCCccEEECCCCCCCcCCCC-CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEEC
Confidence            345555555555555555433 1145555555555555554444555555666666555 44444432 45555566666


Q ss_pred             cccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCccc
Q 038551          112 SWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHL  191 (366)
Q Consensus       112 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L  191 (366)
                      ++|.++.+|..+..+++|++|++++ +.+..++...+.++++|++|++.+|.+..             .....+..+++|
T Consensus        85 s~N~l~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-------------~~~~~~~~l~~L  150 (290)
T 1p9a_G           85 SHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNELKT-------------LPPGLLTPTPKL  150 (290)
T ss_dssp             CSSCCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEECTTSCCCC-------------CCTTTTTTCTTC
T ss_pred             CCCcCCcCchhhccCCCCCEEECCC-CcCcccCHHHHcCCCCCCEEECCCCCCCc-------------cChhhcccccCC
Confidence            6555555555555555566666655 34444443335555556666665555543             222334445555


Q ss_pred             ceeeeccccchh
Q 038551          192 NLLTITLQSFGA  203 (366)
Q Consensus       192 ~~L~l~~~~~~~  203 (366)
                      +.|++++|.+..
T Consensus       151 ~~L~L~~N~l~~  162 (290)
T 1p9a_G          151 EKLSLANNNLTE  162 (290)
T ss_dssp             CEEECTTSCCSC
T ss_pred             CEEECCCCcCCc
Confidence            555555554443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.80  E-value=1.1e-18  Score=152.37  Aligned_cols=181  Identities=25%  Similarity=0.293  Sum_probs=153.8

Q ss_pred             eeccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCC
Q 038551            6 ASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLR   83 (366)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~   83 (366)
                      +|.|. +..+.+++.++++..+|.-.. +.++.|++++|.+..++..  ..+++|++|++++|.+..+++..+..+++|+
T Consensus         9 gC~C~-~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   86 (251)
T 3m19_A            9 GCTCN-EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG   86 (251)
T ss_dssp             SSEEE-GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             ceEcC-CCCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCC
Confidence            46664 345678999999999975332 7999999999999997654  8899999999999999988888789999999


Q ss_pred             EEEccCCCCCCCcc-hhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeec
Q 038551           84 VLILSYNRSLENLP-LGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFE  161 (366)
Q Consensus        84 ~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  161 (366)
                      +|++++| .++.++ ..+..+++|++|++++|.++.++.. +..+++|++|++++ +.+..++...+..+++|++|++.+
T Consensus        87 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~  164 (251)
T 3m19_A           87 TLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLST  164 (251)
T ss_dssp             EEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EEECCCC-cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCC
Confidence            9999999 556555 5578999999999999999988875 68999999999999 577777776588999999999999


Q ss_pred             CCccccccccccccCCchhhhhhhhcCcccceeeeccccchh
Q 038551          162 CGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGA  203 (366)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  203 (366)
                      |.+..             .....+..+++|+.|++++|.+..
T Consensus       165 N~l~~-------------~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          165 NQLQS-------------VPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             SCCSC-------------CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             CcCCc-------------cCHHHHhCCCCCCEEEeeCCceeC
Confidence            99986             445577889999999999998753

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.79  E-value=2.1e-18  Score=153.82  Aligned_cols=181  Identities=25%  Similarity=0.263  Sum_probs=153.1

Q ss_pred             eccCc-CCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCC
Q 038551            7 STINK-EKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLR   83 (366)
Q Consensus         7 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~   83 (366)
                      |.+.. .+.+.+.+.++++..+|.-. .++++.|++++|.+..++..  ..+++|++|++++|.++.++..  ..+++|+
T Consensus         4 C~~~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            4 CEVSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             SEEECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             ccccccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            44443 56678899999999996432 37999999999999987543  8899999999999999988763  7899999


Q ss_pred             EEEccCCCCCCCcchhhcCCCCCcEEEccccccccccc-cccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecC
Q 038551           84 VLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPI-ELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFEC  162 (366)
Q Consensus        84 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  162 (366)
                      +|++++| .++.+|..+..+++|++|++++|.++.+|. .+..+++|++|++++ +.+..++...+..+++|+.|++.+|
T Consensus        81 ~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           81 TLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             EEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             EEECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCC
Confidence            9999999 788899888999999999999999998875 589999999999999 5777888776889999999999999


Q ss_pred             CccccccccccccCCchhhhhhhhcCcccceeeeccccchhhH
Q 038551          163 GFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQ  205 (366)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  205 (366)
                      ++..             .....+..+++|+.|++++|.+..++
T Consensus       159 ~l~~-------------l~~~~~~~l~~L~~L~L~~N~l~~ip  188 (290)
T 1p9a_G          159 NLTE-------------LPAGLLNGLENLDTLLLQENSLYTIP  188 (290)
T ss_dssp             CCSC-------------CCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             cCCc-------------cCHHHhcCcCCCCEEECCCCcCCccC
Confidence            9985             33445677899999999988776543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.79  E-value=2.6e-18  Score=151.78  Aligned_cols=158  Identities=23%  Similarity=0.294  Sum_probs=75.8

Q ss_pred             CCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcE
Q 038551           30 IGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIFNLVSLQH  108 (366)
Q Consensus        30 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~  108 (366)
                      ...+++|+.|++.++.+..++....+++|++|++++|.+..++.  +..+++|++|++++| .++.++ ..+.++++|++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISA--LKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCE
T ss_pred             cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchh--hcCCCCCCEEECCCC-ccCccChhHhcCCcCCCE
Confidence            33444555555555555544444445555555555555544431  445555555555555 333332 22345555555


Q ss_pred             EEcccccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhc
Q 038551          109 LDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLV  187 (366)
Q Consensus       109 L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  187 (366)
                      |++++|.++.++.. +..+++|++|++++| .+..++...+..+++|++|++.+|.+.+             .....+..
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~  179 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQS-------------LPEGVFDK  179 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC-------------CCTTTTTT
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCc-------------cCHHHhcC
Confidence            55555555544433 445555555555552 3334443334455555555555555443             22233344


Q ss_pred             Ccccceeeeccccchhh
Q 038551          188 LKHLNLLTITLQSFGAL  204 (366)
Q Consensus       188 l~~L~~L~l~~~~~~~~  204 (366)
                      +++|+.|++++|.+.++
T Consensus       180 l~~L~~L~L~~N~l~~~  196 (272)
T 3rfs_A          180 LTQLKDLRLYQNQLKSV  196 (272)
T ss_dssp             CTTCCEEECCSSCCSCC
T ss_pred             CccCCEEECCCCcCCcc
Confidence            55555555555554443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.78  E-value=8.8e-19  Score=154.86  Aligned_cols=151  Identities=19%  Similarity=0.280  Sum_probs=72.2

Q ss_pred             cccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcccc
Q 038551           35 ETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWT  114 (366)
Q Consensus        35 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~  114 (366)
                      ++..+++.++.+.+......+++|+.|++++|.+..++.  +..+++|++|++++| .++.++ .+..+++|++|++++|
T Consensus        20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n   95 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGN   95 (272)
T ss_dssp             HHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTS
T ss_pred             HHHHHHhcCcccccccccccccceeeeeeCCCCcccccc--cccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCC
Confidence            333344444444433323444555555555555544433  444555555555555 333332 3455555555555555


Q ss_pred             cccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccce
Q 038551          115 GITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNL  193 (366)
Q Consensus       115 ~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  193 (366)
                      .++.++.. +..+++|++|++++| .+..++...+..+++|++|++.+|.+..             .....+..+++|+.
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------------~~~~~~~~l~~L~~  161 (272)
T 3rfs_A           96 QLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQS-------------LPKGVFDKLTNLTE  161 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCC-------------CCTTTTTTCTTCCE
T ss_pred             ccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCccCc-------------cCHHHhccCccCCE
Confidence            55544432 355555555555552 3334443334455555555555555543             22233344555555


Q ss_pred             eeeccccchh
Q 038551          194 LTITLQSFGA  203 (366)
Q Consensus       194 L~l~~~~~~~  203 (366)
                      |++++|.+..
T Consensus       162 L~l~~n~l~~  171 (272)
T 3rfs_A          162 LDLSYNQLQS  171 (272)
T ss_dssp             EECCSSCCCC
T ss_pred             EECCCCCcCc
Confidence            5555554443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.78  E-value=8.3e-18  Score=165.78  Aligned_cols=125  Identities=25%  Similarity=0.267  Sum_probs=110.9

Q ss_pred             CCccEEEecCCCcccCC--CCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEc
Q 038551           12 EKENFLVLAGVGLTEAP--SIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLIL   87 (366)
Q Consensus        12 ~~~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l   87 (366)
                      ...+.+++.++.+..++  .+.++++|++|++++|.++.+++.  ..+++|++|++++|.+..+++++|..+++|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            35678999999999994  589999999999999999998764  78999999999999999999988999999999999


Q ss_pred             cCCCCCCCcch-hhcCCCCCcEEEcccccccc--ccccccCCCCCCEEEcccc
Q 038551           88 SYNRSLENLPL-GIFNLVSLQHLDISWTGITT--LPIELKYLVNLKCLNLEYT  137 (366)
Q Consensus        88 ~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~--l~~~l~~l~~L~~L~l~~~  137 (366)
                      ++| .++.++. .++++++|++|++++|.++.  +|..+..+++|++|++++|
T Consensus       132 s~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  183 (635)
T 4g8a_A          132 VET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  183 (635)
T ss_dssp             TTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             CCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence            999 6666664 58999999999999999874  5667889999999999885

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.78  E-value=8.2e-18  Score=148.45  Aligned_cols=175  Identities=23%  Similarity=0.324  Sum_probs=151.8

Q ss_pred             CccEEEecCCCcccCC--CCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEcc
Q 038551           13 KENFLVLAGVGLTEAP--SIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILS   88 (366)
Q Consensus        13 ~~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~   88 (366)
                      ..+.+++.++.+..++  .+.++++|+.|++++|.++.++..  ..+++|++|++++|.+..+++..+..+++|++|+++
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence            4678889999999885  589999999999999999998765  679999999999999999998878999999999999


Q ss_pred             CCCCCCCcc-hhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccc
Q 038551           89 YNRSLENLP-LGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV  166 (366)
Q Consensus        89 ~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  166 (366)
                      +| .++.++ ..+.++++|++|++++|.++.+|.. +..+++|++|++++ +.+..++...+.++++|++|++.+|.+..
T Consensus       118 ~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (270)
T 2o6q_A          118 RN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLTELKTLKLDNNQLKR  195 (270)
T ss_dssp             SS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CC-ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC-CcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence            99 555554 5578999999999999999988875 78999999999999 56777776668899999999999999875


Q ss_pred             cccccccccCCchhhhhhhhcCcccceeeeccccch
Q 038551          167 ELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFG  202 (366)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  202 (366)
                                   .....+..+++|+.|++++|...
T Consensus       196 -------------~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          196 -------------VPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             -------------CCTTTTTTCTTCCEEECCSSCBC
T ss_pred             -------------CCHHHhccccCCCEEEecCCCee
Confidence                         33455778899999999998753

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.77  E-value=1.1e-17  Score=150.63  Aligned_cols=181  Identities=20%  Similarity=0.274  Sum_probs=155.4

Q ss_pred             CCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCC
Q 038551           12 EKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR   91 (366)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~   91 (366)
                      ...+.+.+.++++..++.+..+++|+.|++++|.+..++....+++|++|++++|.+..++.  +..+++|++|++++| 
T Consensus        41 ~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n-  117 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTST-  117 (308)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEECTTS-
T ss_pred             CCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchh--hcCCCCCCEEECCCC-
Confidence            35678888999999999999999999999999999998777889999999999999988764  889999999999999 


Q ss_pred             CCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcccccccc
Q 038551           92 SLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEAD  171 (366)
Q Consensus        92 ~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  171 (366)
                      .++.++. +..+++|++|++++|.++.++. +..+++|++|++++| .+..++.  +..+++|++|++.+|.+.+     
T Consensus       118 ~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~-----  187 (308)
T 1h6u_A          118 QITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDNKISD-----  187 (308)
T ss_dssp             CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCC-----
T ss_pred             CCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh--hcCCCCCCEEECCCCccCc-----
Confidence            6777765 8899999999999999998876 889999999999995 6666665  7899999999999999875     


Q ss_pred             ccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCc
Q 038551          172 SILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGS  215 (366)
Q Consensus       172 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~  215 (366)
                              .  ..+..+++|+.|++++|.+..++.+..+++++.
T Consensus       188 --------~--~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~  221 (308)
T 1h6u_A          188 --------I--SPLASLPNLIEVHLKNNQISDVSPLANTSNLFI  221 (308)
T ss_dssp             --------C--GGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCE
T ss_pred             --------C--hhhcCCCCCCEEEccCCccCccccccCCCCCCE
Confidence                    1  127889999999999999988776544444333

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.77  E-value=1.3e-18  Score=157.30  Aligned_cols=251  Identities=13%  Similarity=0.073  Sum_probs=185.6

Q ss_pred             cccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcc
Q 038551           35 ETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDIS  112 (366)
Q Consensus        35 ~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~  112 (366)
                      .++..+++.+.+...+..  ..+++|++|++++|.+..+++..+..+++|++|++++| .++..++ +..+++|++|+++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECc
Confidence            455566666777654333  66789999999999999888777999999999999999 5555554 8899999999999


Q ss_pred             ccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccc
Q 038551          113 WTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLN  192 (366)
Q Consensus       113 ~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~  192 (366)
                      +|.++.++.    .++|++|++++ +.+..++..   .+++|++|++.+|.+..             .....+..+++|+
T Consensus        89 ~n~l~~l~~----~~~L~~L~l~~-n~l~~~~~~---~~~~L~~L~l~~N~l~~-------------~~~~~~~~l~~L~  147 (317)
T 3o53_A           89 NNYVQELLV----GPSIETLHAAN-NNISRVSCS---RGQGKKNIYLANNKITM-------------LRDLDEGCRSRVQ  147 (317)
T ss_dssp             SSEEEEEEE----CTTCCEEECCS-SCCSEEEEC---CCSSCEEEECCSSCCCS-------------GGGBCTGGGSSEE
T ss_pred             CCccccccC----CCCcCEEECCC-CccCCcCcc---ccCCCCEEECCCCCCCC-------------ccchhhhccCCCC
Confidence            999987763    48999999999 456665543   46889999999999986             4455677889999


Q ss_pred             eeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccccccccccCCC
Q 038551          193 LLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGF  272 (366)
Q Consensus       193 ~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~  272 (366)
                      .|++++|.+..++.-.-...++.  ++.|+++++.- +...  ....+++|++|++++|.++.++...         ..+
T Consensus       148 ~L~Ls~N~l~~~~~~~~~~~l~~--L~~L~L~~N~l-~~~~--~~~~l~~L~~L~Ls~N~l~~l~~~~---------~~l  213 (317)
T 3o53_A          148 YLDLKLNEIDTVNFAELAASSDT--LEHLNLQYNFI-YDVK--GQVVFAKLKTLDLSSNKLAFMGPEF---------QSA  213 (317)
T ss_dssp             EEECTTSCCCEEEGGGGGGGTTT--CCEEECTTSCC-CEEE--CCCCCTTCCEEECCSSCCCEECGGG---------GGG
T ss_pred             EEECCCCCCCcccHHHHhhccCc--CCEEECCCCcC-cccc--cccccccCCEEECCCCcCCcchhhh---------ccc
Confidence            99999998886532211223444  45566655432 2111  2445889999999999999887543         557


Q ss_pred             CCcceeeeecccceeEEeeccCccccccccccceEEeecCc---------ccCCcccccccCCCC
Q 038551          273 HSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLK---------RLECAELKELPLDCN  328 (366)
Q Consensus       273 ~~L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~---------~~~~~~L~~L~l~~n  328 (366)
                      ++|+.|+++-..++.+  . .  .+..+++ |+.|++++|+         +..++.|+.++++++
T Consensus       214 ~~L~~L~L~~N~l~~l--~-~--~~~~l~~-L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          214 AGVTWISLRNNKLVLI--E-K--ALRFSQN-LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             TTCSEEECTTSCCCEE--C-T--TCCCCTT-CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CcccEEECcCCcccch--h-h--HhhcCCC-CCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence            8999999974333322  2 1  2444677 9999999998         567888888877733

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.77  E-value=2.8e-19  Score=169.89  Aligned_cols=298  Identities=16%  Similarity=0.146  Sum_probs=161.4

Q ss_pred             ccEEEecCCCcccC------CCCCCCCcccEEEcccCCccccC--CC-CCCC----CccEEEccCCCCccc----cchhh
Q 038551           14 ENFLVLAGVGLTEA------PSIGMWKETTRMSLMQNAIQNLT--EI-PTCP----RLRTLFLPSNHLGTV----SNNFF   76 (366)
Q Consensus        14 ~~~~~~~~~~~~~~------~~~~~~~~L~~L~l~~~~~~~l~--~~-~~~~----~L~~L~l~~~~~~~i----~~~~~   76 (366)
                      .+.+++.++++.+.      ..+..+++|++|++++|.+.+..  .. ..++    +|++|++++|.++..    .+..+
T Consensus        30 L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l  109 (461)
T 1z7x_W           30 CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL  109 (461)
T ss_dssp             CSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHT
T ss_pred             ccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHH
Confidence            44555555555421      22444566666666666655411  11 1222    566666666666521    12235


Q ss_pred             cCCCCCCEEEccCCCCCCCc-chhh-----cCCCCCcEEEcccccccc-----ccccccCCCCCCEEEcccccccCccCh
Q 038551           77 HSMASLRVLILSYNRSLENL-PLGI-----FNLVSLQHLDISWTGITT-----LPIELKYLVNLKCLNLEYTFRLSRIPQ  145 (366)
Q Consensus        77 ~~l~~L~~L~l~~~~~~~~l-~~~~-----~~l~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~l~~~~~~~~~~~  145 (366)
                      ..+++|++|++++| .++.. +..+     ...++|++|++++|.++.     ++..+..+++|++|++++|. ++....
T Consensus       110 ~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~  187 (461)
T 1z7x_W          110 RTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGV  187 (461)
T ss_dssp             TSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHH
T ss_pred             ccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHH
Confidence            56666666666666 23311 1111     123456666666666552     33445556667777776643 322211


Q ss_pred             hhhc-----CCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccchhh--HhHhh-h-cccCcc
Q 038551          146 QVIS-----DLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGAL--QRLLS-Y-CRLGSI  216 (366)
Q Consensus       146 ~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~l~~-~-~~l~~l  216 (366)
                      ..+.     ..++|++|++.+|.+...         .....+..+..+++|+.|++++|.+...  ..+.. . ..++. 
T Consensus       188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~---------~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~-  257 (461)
T 1z7x_W          188 RVLCQGLKDSPCQLEALKLESCGVTSD---------NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR-  257 (461)
T ss_dssp             HHHHHHHHHSCCCCCEEECTTSCCBTT---------HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC-
T ss_pred             HHHHHHHhcCCCCceEEEccCCCCcHH---------HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCC-
Confidence            1121     244677777777766541         1112456667778888888888876542  11111 1 12233 


Q ss_pred             cceeeeccccCCCCCcch----hhhccCCcCcEEEeccCccceEeccccccccccccCCCCCcceeeee-----------
Q 038551          217 STQCLCLRHLNNSNSLSV----FAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYK-----------  281 (366)
Q Consensus       217 ~l~~L~~~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~-----------  281 (366)
                       ++.|++..+ .++....    ..+..+++|++|++++|.++........  ..+. ...++|+.|+++           
T Consensus       258 -L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~--~~l~-~~~~~L~~L~L~~n~l~~~~~~~  332 (461)
T 1z7x_W          258 -LRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC--ETLL-EPGCQLESLWVKSCSFTAACCSH  332 (461)
T ss_dssp             -CCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH--HHHT-STTCCCCEEECTTSCCBGGGHHH
T ss_pred             -ceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHH--HHhc-cCCccceeeEcCCCCCchHHHHH
Confidence             556777665 3343321    2345678888888888876643322111  0000 223577777776           


Q ss_pred             -------cccceeEEeeccCccccc-------------cccccceEEeecCc------------ccCCcccccccCCCCC
Q 038551          282 -------ILKIEARDMACTCSQYQA-------------CPRGLTKFEEHPLK------------RLECAELKELPLDCNH  329 (366)
Q Consensus       282 -------l~~l~~L~l~~~c~~l~~-------------~~~~L~~L~l~~~~------------~~~~~~L~~L~l~~n~  329 (366)
                             .+.++.|+++ +| .+++             .+. |++|++++|.            +..+++|++|++++|.
T Consensus       333 l~~~l~~~~~L~~L~Ls-~n-~i~~~~~~~l~~~l~~~~~~-L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          333 FSSVLAQNRFLLELQIS-NN-RLEDAGVRELCQGLGQPGSV-LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             HHHHHHHCSSCCEEECC-SS-BCHHHHHHHHHHHHTSTTCC-CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             HHHHHhhCCCccEEEcc-CC-ccccccHHHHHHHHcCCCCc-eEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence                   2455777777 66 2322             236 8888888887            4468888888888888


Q ss_pred             CC
Q 038551          330 GL  331 (366)
Q Consensus       330 ~~  331 (366)
                      +.
T Consensus       410 i~  411 (461)
T 1z7x_W          410 LG  411 (461)
T ss_dssp             CC
T ss_pred             CC
Confidence            75

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.76  E-value=2.6e-18  Score=164.24  Aligned_cols=198  Identities=17%  Similarity=0.131  Sum_probs=141.7

Q ss_pred             CCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcE
Q 038551           31 GMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQH  108 (366)
Q Consensus        31 ~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~  108 (366)
                      ..+++|+.|++++|.+..+++.  ..+++|++|++++|.+..+++  +..+++|++|++++| .++.+|.    .++|++
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~  103 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIET  103 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCE
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCE
Confidence            3456899999999988887643  788899999999998876665  778899999999998 5665553    378999


Q ss_pred             EEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhh-c
Q 038551          109 LDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELL-V  187 (366)
Q Consensus       109 L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~-~  187 (366)
                      |++++|.++.++..  .+++|+.|++++| .+..++...+..+++|+.|++++|.+.+             ..+..+. .
T Consensus       104 L~L~~N~l~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------~~~~~l~~~  167 (487)
T 3oja_A          104 LHAANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDT-------------VNFAELAAS  167 (487)
T ss_dssp             EECCSSCCCCEEEC--CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCE-------------EEGGGGGGG
T ss_pred             EECcCCcCCCCCcc--ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCC-------------cChHHHhhh
Confidence            99999988877653  5688999999985 4444443337788889999999998875             4455554 6


Q ss_pred             CcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEec
Q 038551          188 LKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKI  258 (366)
Q Consensus       188 l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~  258 (366)
                      +++|+.|++++|.+.+++....   +++  +..|+++++.- +..+ ..+..+++|+.|++++|.++.++.
T Consensus       168 l~~L~~L~Ls~N~l~~~~~~~~---l~~--L~~L~Ls~N~l-~~~~-~~~~~l~~L~~L~Ls~N~l~~lp~  231 (487)
T 3oja_A          168 SDTLEHLNLQYNFIYDVKGQVV---FAK--LKTLDLSSNKL-AFMG-PEFQSAAGVTWISLRNNKLVLIEK  231 (487)
T ss_dssp             TTTCCEEECTTSCCCEEECCCC---CTT--CCEEECCSSCC-CEEC-GGGGGGTTCSEEECTTSCCCEECT
T ss_pred             CCcccEEecCCCcccccccccc---CCC--CCEEECCCCCC-CCCC-HhHcCCCCccEEEecCCcCcccch
Confidence            7889999999888877654332   333  33455544322 2221 126677788888888887776653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.76  E-value=3.2e-18  Score=163.67  Aligned_cols=231  Identities=14%  Similarity=0.096  Sum_probs=171.5

Q ss_pred             CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEE
Q 038551           53 PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCL  132 (366)
Q Consensus        53 ~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L  132 (366)
                      ..+++|++|++++|.+..+++..|..+++|++|++++| .++..++ +..+++|++|++++|.++.+|..    ++|++|
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L  104 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETL  104 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEE
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEE
Confidence            45669999999999999888777999999999999999 5555544 88999999999999999887743    899999


Q ss_pred             EcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcc
Q 038551          133 NLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCR  212 (366)
Q Consensus       133 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~  212 (366)
                      ++++| .+..++..   .+++|+.|++.+|.+.+             ..+..+..+++|+.|++++|.+.+...-.-...
T Consensus       105 ~L~~N-~l~~~~~~---~l~~L~~L~L~~N~l~~-------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~  167 (487)
T 3oja_A          105 HAANN-NISRVSCS---RGQGKKNIYLANNKITM-------------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS  167 (487)
T ss_dssp             ECCSS-CCCCEEEC---CCSSCEEEECCSSCCCS-------------GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGG
T ss_pred             ECcCC-cCCCCCcc---ccCCCCEEECCCCCCCC-------------CCchhhcCCCCCCEEECCCCCCCCcChHHHhhh
Confidence            99995 55555543   56889999999999986             556677889999999999998886432111223


Q ss_pred             cCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccccccccccCCCCCcceeeeecccceeEEeec
Q 038551          213 LGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMAC  292 (366)
Q Consensus       213 l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~  292 (366)
                      ++.  +..|+++++.-....   ....+++|++|++++|.++.++...         ..+++|+.|+++-..+..  +. 
T Consensus       168 l~~--L~~L~Ls~N~l~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~---------~~l~~L~~L~Ls~N~l~~--lp-  230 (487)
T 3oja_A          168 SDT--LEHLNLQYNFIYDVK---GQVVFAKLKTLDLSSNKLAFMGPEF---------QSAAGVTWISLRNNKLVL--IE-  230 (487)
T ss_dssp             TTT--CCEEECTTSCCCEEE---CCCCCTTCCEEECCSSCCCEECGGG---------GGGTTCSEEECTTSCCCE--EC-
T ss_pred             CCc--ccEEecCCCcccccc---ccccCCCCCEEECCCCCCCCCCHhH---------cCCCCccEEEecCCcCcc--cc-
Confidence            444  445666554322222   2456899999999999999887543         457888888886322221  12 


Q ss_pred             cCccccccccccceEEeecCc---------ccCCcccccccCC
Q 038551          293 TCSQYQACPRGLTKFEEHPLK---------RLECAELKELPLD  326 (366)
Q Consensus       293 ~c~~l~~~~~~L~~L~l~~~~---------~~~~~~L~~L~l~  326 (366)
                      .  .+..+++ |+.|++++|+         +..++.|+.+.++
T Consensus       231 ~--~l~~l~~-L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          231 K--ALRFSQN-LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             T--TCCCCTT-CCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             h--hhccCCC-CCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            1  1333677 9999999988         5667777777764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.76  E-value=2.3e-17  Score=146.00  Aligned_cols=152  Identities=21%  Similarity=0.169  Sum_probs=124.5

Q ss_pred             EEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcEEEcccccc
Q 038551           38 RMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIFNLVSLQHLDISWTGI  116 (366)
Q Consensus        38 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~  116 (366)
                      .++..+..+..+|.. -.++|++|++++|.+..+++..+..+++|++|++++| .++.++ ..+.++++|++|++++|.+
T Consensus        11 ~~~c~~~~l~~ip~~-l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           11 TYQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EEECTTSCCSSCCSS-SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             eEEecCCCccccCCC-CCCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCcc
Confidence            456666677777764 2257999999999999888866899999999999999 666655 4688999999999999999


Q ss_pred             cccc-ccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceee
Q 038551          117 TTLP-IELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLT  195 (366)
Q Consensus       117 ~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  195 (366)
                      +.++ ..+..+++|++|++++| .+..++...+.++++|++|++.+|.+..            ...+..+..+++|+.|+
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~l~~~~~~l~~L~~L~  155 (276)
T 2z62_A           89 QSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQS------------FKLPEYFSNLTNLEHLD  155 (276)
T ss_dssp             CEECTTTTTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCC------------CCCCGGGGGCTTCCEEE
T ss_pred             CccChhhhcCCccccEEECCCC-CccccCchhcccCCCCCEEECcCCccce------------ecCchhhccCCCCCEEE
Confidence            8776 45899999999999995 5555555448899999999999999874            12467788899999999


Q ss_pred             eccccchhh
Q 038551          196 ITLQSFGAL  204 (366)
Q Consensus       196 l~~~~~~~~  204 (366)
                      +++|.+..+
T Consensus       156 Ls~N~l~~~  164 (276)
T 2z62_A          156 LSSNKIQSI  164 (276)
T ss_dssp             CCSSCCCEE
T ss_pred             CCCCCCCcC
Confidence            999987764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.75  E-value=1.7e-17  Score=151.99  Aligned_cols=243  Identities=17%  Similarity=0.165  Sum_probs=157.7

Q ss_pred             eccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCC-ccccchhhcCCCCCC
Q 038551            7 STINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHL-GTVSNNFFHSMASLR   83 (366)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~-~~i~~~~~~~l~~L~   83 (366)
                      |.|.   .+.+.|.++++.++|.-- .++++.|++++|.++.++..  ..+++|++|++++|.+ +.++.++|..+++++
T Consensus         7 C~C~---~~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~   82 (350)
T 4ay9_X            7 CHCS---NRVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH   82 (350)
T ss_dssp             SEEE---TTEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCC
T ss_pred             cEee---CCEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhh
Confidence            5553   246788888898887422 36788899998888888764  7788888888888877 457777788888876


Q ss_pred             E-EEccCCCCCCCc-chhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCc-CCcEEEe
Q 038551           84 V-LILSYNRSLENL-PLGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLK-MLRALRM  159 (366)
Q Consensus        84 ~-L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l  159 (366)
                      . +.+.+| .++.+ |..+.++++|++|++++|.++.+|.. +....++..+++.+++.+..++...+..+. .++.|++
T Consensus        83 ~~l~~~~N-~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L  161 (350)
T 4ay9_X           83 EIRIEKAN-NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL  161 (350)
T ss_dssp             EEEEEEET-TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred             hhhcccCC-cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcc
Confidence            5 445556 55655 45677888888888888888877653 455667778888776677777765455543 5777777


Q ss_pred             ecCCccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhcc
Q 038551          160 FECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFAS  239 (366)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~  239 (366)
                      .+|.+..              +........+|..+                           .+.+...+...+...+.+
T Consensus       162 ~~N~i~~--------------i~~~~f~~~~L~~l---------------------------~l~~~n~l~~i~~~~f~~  200 (350)
T 4ay9_X          162 NKNGIQE--------------IHNSAFNGTQLDEL---------------------------NLSDNNNLEELPNDVFHG  200 (350)
T ss_dssp             CSSCCCE--------------ECTTSSTTEEEEEE---------------------------ECTTCTTCCCCCTTTTTT
T ss_pred             ccccccC--------------CChhhccccchhHH---------------------------hhccCCcccCCCHHHhcc
Confidence            7777653              22222222334444                           443333333333234678


Q ss_pred             CCcCcEEEeccCccceEeccccccccccccCCCCCcceeeee-cccceeEEeeccCccccccccccceEEeecCc
Q 038551          240 LRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYK-ILKIEARDMACTCSQYQACPRGLTKFEEHPLK  313 (366)
Q Consensus       240 ~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~-l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~  313 (366)
                      +++|++|++++|.++.++.           ..+.+|+.|... ...     ++ .-+.+..+++ |+.+++.++.
T Consensus       201 l~~L~~LdLs~N~l~~lp~-----------~~~~~L~~L~~l~~~~-----l~-~lP~l~~l~~-L~~l~l~~~~  257 (350)
T 4ay9_X          201 ASGPVILDISRTRIHSLPS-----------YGLENLKKLRARSTYN-----LK-KLPTLEKLVA-LMEASLTYPS  257 (350)
T ss_dssp             EECCSEEECTTSCCCCCCS-----------SSCTTCCEEECTTCTT-----CC-CCCCTTTCCS-CCEEECSCHH
T ss_pred             CcccchhhcCCCCcCccCh-----------hhhccchHhhhccCCC-----cC-cCCCchhCcC-hhhCcCCCCc
Confidence            8899999999999888775           335566666442 111     11 2223444667 8888876543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.75  E-value=8e-19  Score=166.75  Aligned_cols=293  Identities=18%  Similarity=0.129  Sum_probs=198.8

Q ss_pred             cEEEecCCCcccCC---CCCCCCcccEEEcccCCccc-----cCCC-CCCCCccEEEccCCCCccc-cchhhcCCC----
Q 038551           15 NFLVLAGVGLTEAP---SIGMWKETTRMSLMQNAIQN-----LTEI-PTCPRLRTLFLPSNHLGTV-SNNFFHSMA----   80 (366)
Q Consensus        15 ~~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~~i-~~~~~~~l~----   80 (366)
                      ..+++.++.+.+.+   .+..+++|+.|++++|.+..     ++.. ..+++|++|++++|.++.. +..++..++    
T Consensus         6 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~   85 (461)
T 1z7x_W            6 QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC   85 (461)
T ss_dssp             EEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTC
T ss_pred             eehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCC
Confidence            45677777776552   25678899999999998884     3433 6788999999999988653 233344555    


Q ss_pred             CCCEEEccCCCCCC-----CcchhhcCCCCCcEEEccccccccc-----ccc-ccCCCCCCEEEcccccccCcc----Ch
Q 038551           81 SLRVLILSYNRSLE-----NLPLGIFNLVSLQHLDISWTGITTL-----PIE-LKYLVNLKCLNLEYTFRLSRI----PQ  145 (366)
Q Consensus        81 ~L~~L~l~~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~l-----~~~-l~~l~~L~~L~l~~~~~~~~~----~~  145 (366)
                      +|++|++++| .++     .++..+..+++|++|++++|.++..     ... ....++|++|++++|......    +.
T Consensus        86 ~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  164 (461)
T 1z7x_W           86 KIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS  164 (461)
T ss_dssp             CCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             ceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence            6999999999 455     4577788999999999999988632     222 234678999999996443322    22


Q ss_pred             hhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhh-----cCcccceeeeccccchhhH--hHh-hhcccCccc
Q 038551          146 QVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELL-----VLKHLNLLTITLQSFGALQ--RLL-SYCRLGSIS  217 (366)
Q Consensus       146 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~--~l~-~~~~l~~l~  217 (366)
                      . +..+++|++|++.+|.+..             ..+..+.     ..++|+.|++++|.+....  .+. .+..+++  
T Consensus       165 ~-l~~~~~L~~L~L~~n~i~~-------------~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~--  228 (461)
T 1z7x_W          165 V-LRAKPDFKELTVSNNDINE-------------AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKAS--  228 (461)
T ss_dssp             H-HHHCTTCCEEECCSSBCHH-------------HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTT--
T ss_pred             H-HhhCCCCCEEECcCCCcch-------------HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCC--
Confidence            2 5678899999999998875             3233332     3568999999998877521  111 1223333  


Q ss_pred             ceeeeccccCCCCCcchhhh-----ccCCcCcEEEeccCccceEeccccccccccccCCCCCcceeeee-----------
Q 038551          218 TQCLCLRHLNNSNSLSVFAF-----ASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYK-----------  281 (366)
Q Consensus       218 l~~L~~~~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~-----------  281 (366)
                      ++.|+++.+. +....+..+     ..+++|++|++++|.++........  ..+  ..+++|+.|+++           
T Consensus       229 L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--~~l--~~~~~L~~L~Ls~n~i~~~~~~~  303 (461)
T 1z7x_W          229 LRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC--RVL--RAKESLKELSLAGNELGDEGARL  303 (461)
T ss_dssp             CCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH--HHH--HHCTTCCEEECTTCCCHHHHHHH
T ss_pred             ccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH--HHH--hhCCCcceEECCCCCCchHHHHH
Confidence            5557776653 333322212     2478999999999987763211110  111  347899999998           


Q ss_pred             --------cccceeEEeeccCccccc------------cccccceEEeecCc--------cc-----CCcccccccCCCC
Q 038551          282 --------ILKIEARDMACTCSQYQA------------CPRGLTKFEEHPLK--------RL-----ECAELKELPLDCN  328 (366)
Q Consensus       282 --------l~~l~~L~l~~~c~~l~~------------~~~~L~~L~l~~~~--------~~-----~~~~L~~L~l~~n  328 (366)
                              .+.++.|+++ +|. ++.            .++ |++|++++|.        +.     .++.|+.|++++|
T Consensus       304 l~~~l~~~~~~L~~L~L~-~n~-l~~~~~~~l~~~l~~~~~-L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  380 (461)
T 1z7x_W          304 LCETLLEPGCQLESLWVK-SCS-FTAACCSHFSSVLAQNRF-LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC  380 (461)
T ss_dssp             HHHHHTSTTCCCCEEECT-TSC-CBGGGHHHHHHHHHHCSS-CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHhccCCccceeeEcC-CCC-CchHHHHHHHHHHhhCCC-ccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence                    1477899999 884 322            477 9999999998        11     2779999999999


Q ss_pred             CCCC
Q 038551          329 HGLE  332 (366)
Q Consensus       329 ~~~~  332 (366)
                      .+.+
T Consensus       381 ~i~~  384 (461)
T 1z7x_W          381 DVSD  384 (461)
T ss_dssp             CCCH
T ss_pred             CCCh
Confidence            8863

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.74  E-value=1.1e-16  Score=156.67  Aligned_cols=235  Identities=20%  Similarity=0.118  Sum_probs=182.1

Q ss_pred             CCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCC
Q 038551           12 EKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR   91 (366)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~   91 (366)
                      ...+.+.+.++.+..+|.  .+++|+.|++++|.++.+|.  .+++|++|++++|.++.++.    .+++|+.|++++| 
T Consensus        61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N-  131 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGN-  131 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSS-
T ss_pred             CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCC-
Confidence            467889999999999877  67999999999999998887  78999999999999998886    4789999999999 


Q ss_pred             CCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcccccccc
Q 038551           92 SLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEAD  171 (366)
Q Consensus        92 ~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  171 (366)
                      .++.+|..   +++|++|++++|.++.+|.   .+.+|+.|++++ +.+..+|    ..+++|+.|++.+|.+..     
T Consensus       132 ~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~-N~l~~l~----~~~~~L~~L~Ls~N~l~~-----  195 (622)
T 3g06_A          132 QLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYN-NQLTSLP----MLPSGLQELSVSDNQLAS-----  195 (622)
T ss_dssp             CCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCC----CCCTTCCEEECCSSCCSC-----
T ss_pred             CCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCC-CCCCCCc----ccCCCCcEEECCCCCCCC-----
Confidence            77878864   4899999999999998885   457899999999 5777777    356889999999999874     


Q ss_pred             ccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccC
Q 038551          172 SILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFN  251 (366)
Q Consensus       172 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  251 (366)
                               ++.   .+++|+.|++++|.+..++..  +   .  ++..|+++++. ++..+    ..+++|+.|++++|
T Consensus       196 ---------l~~---~~~~L~~L~L~~N~l~~l~~~--~---~--~L~~L~Ls~N~-L~~lp----~~l~~L~~L~Ls~N  251 (622)
T 3g06_A          196 ---------LPT---LPSELYKLWAYNNRLTSLPAL--P---S--GLKELIVSGNR-LTSLP----VLPSELKELMVSGN  251 (622)
T ss_dssp             ---------CCC---CCTTCCEEECCSSCCSSCCCC--C---T--TCCEEECCSSC-CSCCC----CCCTTCCEEECCSS
T ss_pred             ---------CCC---ccchhhEEECcCCcccccCCC--C---C--CCCEEEccCCc-cCcCC----CCCCcCcEEECCCC
Confidence                     111   247899999999988876542  2   2  25556665542 22222    35689999999999


Q ss_pred             ccceEeccccccccccccCCCCCcceeeeecccceeEEeeccCccccccccccceEEeecCc
Q 038551          252 DLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLK  313 (366)
Q Consensus       252 ~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~  313 (366)
                      .++.++            ..+++|+.|+++-..+..  +.   ..+..+++ |+.|+|++|+
T Consensus       252 ~L~~lp------------~~~~~L~~L~Ls~N~L~~--lp---~~l~~l~~-L~~L~L~~N~  295 (622)
T 3g06_A          252 RLTSLP------------MLPSGLLSLSVYRNQLTR--LP---ESLIHLSS-ETTVNLEGNP  295 (622)
T ss_dssp             CCSCCC------------CCCTTCCEEECCSSCCCS--CC---GGGGGSCT-TCEEECCSCC
T ss_pred             CCCcCC------------cccccCcEEeCCCCCCCc--CC---HHHhhccc-cCEEEecCCC
Confidence            988776            346788888776222221  11   12445788 9999999998

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=1.9e-17  Score=147.71  Aligned_cols=181  Identities=23%  Similarity=0.342  Sum_probs=106.2

Q ss_pred             cccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCC
Q 038551           24 LTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNL  103 (366)
Q Consensus        24 ~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l  103 (366)
                      +.++.....+++|+.|++++|.+..++....+++|++|++++|.+..+++  +..+++|++|++++| .++.++. +..+
T Consensus        36 ~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~-l~~l  111 (291)
T 1h6t_A           36 VTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLSS-LKDL  111 (291)
T ss_dssp             TTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGGG-GTTC
T ss_pred             cccccchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCChh-hccC
Confidence            33333344556666666666666666544556666666666666666554  556666666666666 4444443 5666


Q ss_pred             CCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhh
Q 038551          104 VSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVE  183 (366)
Q Consensus       104 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  183 (366)
                      ++|++|++++|.++.++ .+..+++|++|++++| .+..++.  +..+++|++|++.+|.+.+             ..+ 
T Consensus       112 ~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l~~-------------~~~-  173 (291)
T 1h6t_A          112 KKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISD-------------IVP-  173 (291)
T ss_dssp             TTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCC-------------CGG-
T ss_pred             CCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcchh--hccCCCCCEEEccCCcccc-------------chh-
Confidence            66666666666666553 3556666666666663 4444422  5566666666666666653             111 


Q ss_pred             hhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEe
Q 038551          184 ELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELK  257 (366)
Q Consensus       184 ~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~  257 (366)
                       +..+++|+.|++++|.+..++                              .+..+++|+.|++++|.+...+
T Consensus       174 -l~~l~~L~~L~L~~N~i~~l~------------------------------~l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          174 -LAGLTKLQNLYLSKNHISDLR------------------------------ALAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             -GTTCTTCCEEECCSSCCCBCG------------------------------GGTTCTTCSEEEEEEEEEECCC
T ss_pred             -hcCCCccCEEECCCCcCCCCh------------------------------hhccCCCCCEEECcCCcccCCc
Confidence             555566666666555443321                              2556777888888887666543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.73  E-value=1.2e-17  Score=144.66  Aligned_cols=177  Identities=16%  Similarity=0.207  Sum_probs=151.2

Q ss_pred             CCccEEEecCCCcccCC--CCCCCCcccEEEcccCC-ccccCCC--CCCCCccEEEccC-CCCccccchhhcCCCCCCEE
Q 038551           12 EKENFLVLAGVGLTEAP--SIGMWKETTRMSLMQNA-IQNLTEI--PTCPRLRTLFLPS-NHLGTVSNNFFHSMASLRVL   85 (366)
Q Consensus        12 ~~~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~-~~~l~~~--~~~~~L~~L~l~~-~~~~~i~~~~~~~l~~L~~L   85 (366)
                      ...+.+++.++.+..++  .+.++++|+.|++++|. ++.++..  ..+++|++|++++ |.+..+++..|..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            46788899999999985  58899999999999997 9988764  7899999999998 89999988779999999999


Q ss_pred             EccCCCCCCCcchhhcCCCCCc---EEEcccc-cccccccc-ccCCCCCC-EEEcccccccCccChhhhcCCcCCcEEEe
Q 038551           86 ILSYNRSLENLPLGIFNLVSLQ---HLDISWT-GITTLPIE-LKYLVNLK-CLNLEYTFRLSRIPQQVISDLKMLRALRM  159 (366)
Q Consensus        86 ~l~~~~~~~~l~~~~~~l~~L~---~L~l~~~-~~~~l~~~-l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  159 (366)
                      ++++| .++.+|. +..+++|+   +|++++| .++.+|.. +..+++|+ +|++++ +.+..+|...+.. ++|++|++
T Consensus       111 ~l~~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~~-~~L~~L~L  186 (239)
T 2xwt_C          111 GIFNT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNG-TKLDAVYL  186 (239)
T ss_dssp             EEEEE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTTT-CEEEEEEC
T ss_pred             eCCCC-CCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhcCC-CCCCEEEc
Confidence            99999 6777887 88888888   9999999 99988865 88999999 999999 5667888765555 89999999


Q ss_pred             ecCC-ccccccccccccCCchhhhhhhhcC-cccceeeeccccchhhH
Q 038551          160 FECG-FNVELEADSILFGDSEVLVEELLVL-KHLNLLTITLQSFGALQ  205 (366)
Q Consensus       160 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~  205 (366)
                      .+|. +..             .....+..+ ++|+.|++++|.+..++
T Consensus       187 ~~n~~l~~-------------i~~~~~~~l~~~L~~L~l~~N~l~~l~  221 (239)
T 2xwt_C          187 NKNKYLTV-------------IDKDAFGGVYSGPSLLDVSQTSVTALP  221 (239)
T ss_dssp             TTCTTCCE-------------ECTTTTTTCSBCCSEEECTTCCCCCCC
T ss_pred             CCCCCccc-------------CCHHHhhccccCCcEEECCCCccccCC
Confidence            9995 764             334566777 89999999988776654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.73  E-value=6.6e-17  Score=141.02  Aligned_cols=178  Identities=21%  Similarity=0.281  Sum_probs=142.9

Q ss_pred             CcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccc
Q 038551           34 KETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISW  113 (366)
Q Consensus        34 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~  113 (366)
                      ...+.++++++.++.+|.. -.+.++.|++++|.+..+++..+..+++|++|++++|...+..+..+.++++|++|++++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSG-IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSC-CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCCeEEecCCCCccccCCC-CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            4578899999999998865 226899999999999988887799999999999999944444455688999999999999


Q ss_pred             ccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccc
Q 038551          114 TGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLN  192 (366)
Q Consensus       114 ~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~  192 (366)
                      |.++.++.. +..+++|++|++++ +.+..++...+..+++|++|++.+|.+..             .....+..+++|+
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------~~~~~~~~l~~L~  158 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGG-NQLKSLPSGVFDRLTKLKELRLNTNQLQS-------------IPAGAFDKLTNLQ  158 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCC-------------CCTTTTTTCTTCC
T ss_pred             CcccccChhHhcccCCCCEEEcCC-CcCCCcChhHhccCCcccEEECcCCcCCc-------------cCHHHcCcCcCCC
Confidence            999988754 78999999999999 57778887767899999999999999885             3445677888999


Q ss_pred             eeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccc
Q 038551          193 LLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLE  254 (366)
Q Consensus       193 ~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~  254 (366)
                      .|++++|.+..++.                            ..+..+++|++|++++|.+.
T Consensus       159 ~L~L~~N~l~~~~~----------------------------~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          159 TLSLSTNQLQSVPH----------------------------GAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             EEECCSSCCSCCCT----------------------------TTTTTCTTCCEEECCSCCBC
T ss_pred             EEECCCCcCCccCH----------------------------HHHhCCCCCCEEEeeCCcee
Confidence            99998887654321                            11455667777777777655

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.73  E-value=8.4e-18  Score=164.74  Aligned_cols=295  Identities=14%  Similarity=0.129  Sum_probs=154.1

Q ss_pred             ccEEEecCCC-cc--cCC-CCCCCCcccEEEcccCCccccC-----CC-CCCCCccEEEccCCCCcccc----chhhcCC
Q 038551           14 ENFLVLAGVG-LT--EAP-SIGMWKETTRMSLMQNAIQNLT-----EI-PTCPRLRTLFLPSNHLGTVS----NNFFHSM   79 (366)
Q Consensus        14 ~~~~~~~~~~-~~--~~~-~~~~~~~L~~L~l~~~~~~~l~-----~~-~~~~~L~~L~l~~~~~~~i~----~~~~~~l   79 (366)
                      .+.+.+.++. +.  .++ ...++++|+.|++++|.+.+..     .. ..+++|++|++++|.++.+.    +.++..+
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~  219 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC  219 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence            5566665543 11  111 1236788888888888765432     11 46778888888888775222    2225567


Q ss_pred             CCCCEEEccCCCCCCCcchhhcCCCCCcEEEcccc---------------------------ccccccccccCCCCCCEE
Q 038551           80 ASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWT---------------------------GITTLPIELKYLVNLKCL  132 (366)
Q Consensus        80 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~---------------------------~~~~l~~~l~~l~~L~~L  132 (366)
                      ++|+.|++++| .+..++..+.++++|++|+++..                           ....+|..+..+++|++|
T Consensus       220 ~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L  298 (592)
T 3ogk_B          220 RSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL  298 (592)
T ss_dssp             TTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEE
T ss_pred             CCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEE
Confidence            88888888887 55556666677777777777642                           122233333444445555


Q ss_pred             EcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeecc-----------ccc
Q 038551          133 NLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITL-----------QSF  201 (366)
Q Consensus       133 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-----------~~~  201 (366)
                      ++++|..........+.++++|++|++. +.+.+            .........+++|++|++..           +..
T Consensus       299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~------------~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~  365 (592)
T 3ogk_B          299 DLLYALLETEDHCTLIQKCPNLEVLETR-NVIGD------------RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV  365 (592)
T ss_dssp             EETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHH------------HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC
T ss_pred             ecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCH------------HHHHHHHHhCCCCCEEEeecCccccccccccCcc
Confidence            5544331111111113344445555444 22221            12222223445555555551           222


Q ss_pred             hh--hHhHhhhcccCcccceeeeccccCCCCCcchhhhcc-CCcCcEEEecc----CccceEeccccccccccccCCCCC
Q 038551          202 GA--LQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFAS-LRHLRTLQLYF----NDLEELKIDAGELKRIREICGFHS  274 (366)
Q Consensus       202 ~~--~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~----~~l~~l~~~~~~~~~~~~~~~~~~  274 (366)
                      ..  +..+  ...+++  ++.|++ .+..++...+..++. +++|++|++++    +.++..+.+. +.....  ..+++
T Consensus       366 ~~~~~~~l--~~~~~~--L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~-~~~~~~--~~~~~  437 (592)
T 3ogk_B          366 SQRGLIAL--AQGCQE--LEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN-GVRSLL--IGCKK  437 (592)
T ss_dssp             CHHHHHHH--HHHCTT--CSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH-HHHHHH--HHCTT
T ss_pred             CHHHHHHH--HhhCcc--CeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH-HHHHHH--HhCCC
Confidence            21  1111  111222  222333 233334333333433 66666666652    2444322110 000001  34777


Q ss_pred             cceeeee-----------------cccceeEEeeccCcccc---------ccccccceEEeecCc---------ccCCcc
Q 038551          275 LQKVFYK-----------------ILKIEARDMACTCSQYQ---------ACPRGLTKFEEHPLK---------RLECAE  319 (366)
Q Consensus       275 L~~L~l~-----------------l~~l~~L~l~~~c~~l~---------~~~~~L~~L~l~~~~---------~~~~~~  319 (366)
                      |+.|+++                 .+.++.|+++ +|. ++         .+++ |++|+|++|+         +..+++
T Consensus       438 L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~-~n~-l~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~l~~  514 (592)
T 3ogk_B          438 LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLG-YVG-ESDEGLMEFSRGCPN-LQKLEMRGCCFSERAIAAAVTKLPS  514 (592)
T ss_dssp             CCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEEC-SCC-SSHHHHHHHHTCCTT-CCEEEEESCCCBHHHHHHHHHHCSS
T ss_pred             CCEEEEecCCCCccHHHHHHHHHhCccceEeecc-CCC-CCHHHHHHHHhcCcc-cCeeeccCCCCcHHHHHHHHHhcCc
Confidence            8888873                 3446778888 663 22         2677 9999999987         457899


Q ss_pred             cccccCCCCCCCCc
Q 038551          320 LKELPLDCNHGLEQ  333 (366)
Q Consensus       320 L~~L~l~~n~~~~~  333 (366)
                      |+.|++++|.++..
T Consensus       515 L~~L~ls~n~it~~  528 (592)
T 3ogk_B          515 LRYLWVQGYRASMT  528 (592)
T ss_dssp             CCEEEEESCBCCTT
T ss_pred             cCeeECcCCcCCHH
Confidence            99999999987643

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.73  E-value=7.5e-18  Score=153.34  Aligned_cols=218  Identities=16%  Similarity=0.174  Sum_probs=152.1

Q ss_pred             ccEEEecCCCcccCCCCCCC--CcccEEEcccCCccccCCC-CCCCCccEEEccCCCCcc--ccchhhcCCCCCCEEEcc
Q 038551           14 ENFLVLAGVGLTEAPSIGMW--KETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLGT--VSNNFFHSMASLRVLILS   88 (366)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~--i~~~~~~~l~~L~~L~l~   88 (366)
                      -+.+++.++.+.. ..+..+  ++++.|++.+|.+...+.. ..+++|++|++++|.+..  ++. .+..+++|++|+++
T Consensus        49 ~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~L~  126 (336)
T 2ast_B           49 WQTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLE  126 (336)
T ss_dssp             SSEEECTTCBCCH-HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHH-HHTTBCCCSEEECT
T ss_pred             heeeccccccCCH-HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHH-HHhhCCCCCEEeCc
Confidence            4455555544432 123333  6788888888888875544 678888888888887753  443 37788888888888


Q ss_pred             CCCCCCCcchhhcCCCCCcEEEcccc-ccc--cccccccCCCCCCEEEcccccccCc--cChhhhcCCc-CCcEEEeecC
Q 038551           89 YNRSLENLPLGIFNLVSLQHLDISWT-GIT--TLPIELKYLVNLKCLNLEYTFRLSR--IPQQVISDLK-MLRALRMFEC  162 (366)
Q Consensus        89 ~~~~~~~l~~~~~~l~~L~~L~l~~~-~~~--~l~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~-~L~~L~l~~~  162 (366)
                      +|......+..+..+++|++|++++| .++  .++..+..+++|++|++++|..++.  ++.. +..++ +|++|++.+|
T Consensus       127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNLSGY  205 (336)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEECCSC
T ss_pred             CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEEeCCC
Confidence            88433356677778888888888888 676  3666678888888888888634443  3333 67788 8888888888


Q ss_pred             --CccccccccccccCCchhhhhhhhcCcccceeeeccccc-h--hhHhHhhhcccCcccceeeeccccCCCCCcchhhh
Q 038551          163 --GFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSF-G--ALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAF  237 (366)
Q Consensus       163 --~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~--~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l  237 (366)
                        .+++            ...+..+..+++|+.|++++|.. .  .++.   +..+++  ++.|++..+..+.+..+..+
T Consensus       206 ~~~~~~------------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~---l~~l~~--L~~L~l~~~~~~~~~~~~~l  268 (336)
T 2ast_B          206 RKNLQK------------SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE---FFQLNY--LQHLSLSRCYDIIPETLLEL  268 (336)
T ss_dssp             GGGSCH------------HHHHHHHHHCTTCSEEECTTCTTCCGGGGGG---GGGCTT--CCEEECTTCTTCCGGGGGGG
T ss_pred             cccCCH------------HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH---HhCCCC--CCEeeCCCCCCCCHHHHHHH
Confidence              4442            25556667788888888888873 2  2333   334433  66688877776666665567


Q ss_pred             ccCCcCcEEEeccC
Q 038551          238 ASLRHLRTLQLYFN  251 (366)
Q Consensus       238 ~~~~~L~~L~l~~~  251 (366)
                      ..+++|++|++++|
T Consensus       269 ~~~~~L~~L~l~~~  282 (336)
T 2ast_B          269 GEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGCTTCCEEECTTS
T ss_pred             hcCCCCCEEeccCc
Confidence            78888899988888

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.73  E-value=2.5e-17  Score=161.41  Aligned_cols=294  Identities=13%  Similarity=0.084  Sum_probs=197.5

Q ss_pred             CCccEEEecCCCcccC--CCCCC-CCc-ccEEEcccCC-ccc--cCCC-CCCCCccEEEccCCCCcccc----chhhcCC
Q 038551           12 EKENFLVLAGVGLTEA--PSIGM-WKE-TTRMSLMQNA-IQN--LTEI-PTCPRLRTLFLPSNHLGTVS----NNFFHSM   79 (366)
Q Consensus        12 ~~~~~~~~~~~~~~~~--~~~~~-~~~-L~~L~l~~~~-~~~--l~~~-~~~~~L~~L~l~~~~~~~i~----~~~~~~l   79 (366)
                      ...+.+++.++.+.+.  ..++. +++ |+.|++.+|. +..  ++.. ..+++|++|++++|.+....    ...+..+
T Consensus       112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~  191 (592)
T 3ogk_B          112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN  191 (592)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred             CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence            3456667766655433  22333 345 9999999886 322  3222 57899999999999775432    2235679


Q ss_pred             CCCCEEEccCCCCC----CCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccc----------------
Q 038551           80 ASLRVLILSYNRSL----ENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFR----------------  139 (366)
Q Consensus        80 ~~L~~L~l~~~~~~----~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~----------------  139 (366)
                      ++|+.|++++|...    ..++..+.++++|++|++++|.+..++..+..+++|++|+++....                
T Consensus       192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~  271 (592)
T 3ogk_B          192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK  271 (592)
T ss_dssp             CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred             CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence            99999999999433    1345556789999999999999888887777788888888764211                


Q ss_pred             ----------cCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccch-hhHhHh
Q 038551          140 ----------LSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFG-ALQRLL  208 (366)
Q Consensus       140 ----------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~l~  208 (366)
                                ...++.. +..+++|++|++.+|.+.+            ......+..+++|+.|++..+... +++.+.
T Consensus       272 L~~L~l~~~~~~~l~~~-~~~~~~L~~L~Ls~~~l~~------------~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~  338 (592)
T 3ogk_B          272 LCRLGLSYMGPNEMPIL-FPFAAQIRKLDLLYALLET------------EDHCTLIQKCPNLEVLETRNVIGDRGLEVLA  338 (592)
T ss_dssp             CCEEEETTCCTTTGGGG-GGGGGGCCEEEETTCCCCH------------HHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH
T ss_pred             ccccCccccchhHHHHH-HhhcCCCcEEecCCCcCCH------------HHHHHHHHhCcCCCEEeccCccCHHHHHHHH
Confidence                      1222332 5567788888888887654            233345677888999888732211 233321


Q ss_pred             hhcccCcccceeeeccc----------cCCCCCcchhh-hccCCcCcEEEeccCccceEeccccccccccccCCCCCcce
Q 038551          209 SYCRLGSISTQCLCLRH----------LNNSNSLSVFA-FASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQK  277 (366)
Q Consensus       209 ~~~~l~~l~l~~L~~~~----------~~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~  277 (366)
                        ..+++  ++.|++.+          +..++...+.. ...+++|++|+++.+.++.......+       ..+++|+.
T Consensus       339 --~~~~~--L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~-------~~~~~L~~  407 (592)
T 3ogk_B          339 --QYCKQ--LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG-------TYLKNLCD  407 (592)
T ss_dssp             --HHCTT--CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH-------HHCCSCCE
T ss_pred             --HhCCC--CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH-------hhCCCCcE
Confidence              22333  55577764          66666555433 34689999999977677643322211       33778888


Q ss_pred             eeee-----------------------cccceeEEeeccCcc-ccc---------cccccceEEeecCc---------cc
Q 038551          278 VFYK-----------------------ILKIEARDMACTCSQ-YQA---------CPRGLTKFEEHPLK---------RL  315 (366)
Q Consensus       278 L~l~-----------------------l~~l~~L~l~~~c~~-l~~---------~~~~L~~L~l~~~~---------~~  315 (366)
                      |++.                       +++++.|+++ .|.+ +++         +|+ |++|++++|.         +.
T Consensus       408 L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~-~~~~~l~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~~~~  485 (592)
T 3ogk_B          408 FRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY-LRQGGLTDLGLSYIGQYSPN-VRWMLLGYVGESDEGLMEFSR  485 (592)
T ss_dssp             EEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEE-CCGGGCCHHHHHHHHHSCTT-CCEEEECSCCSSHHHHHHHHT
T ss_pred             EEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEe-cCCCCccHHHHHHHHHhCcc-ceEeeccCCCCCHHHHHHHHh
Confidence            8883                       4556889998 7764 322         678 9999999987         57


Q ss_pred             CCcccccccCCCCCCC
Q 038551          316 ECAELKELPLDCNHGL  331 (366)
Q Consensus       316 ~~~~L~~L~l~~n~~~  331 (366)
                      +|++|+.|++++|.++
T Consensus       486 ~~~~L~~L~l~~n~l~  501 (592)
T 3ogk_B          486 GCPNLQKLEMRGCCFS  501 (592)
T ss_dssp             CCTTCCEEEEESCCCB
T ss_pred             cCcccCeeeccCCCCc
Confidence            8999999999999864

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.72  E-value=6.2e-18  Score=153.90  Aligned_cols=219  Identities=16%  Similarity=0.070  Sum_probs=162.6

Q ss_pred             cccEEEcccCCccccCCC-CCC--CCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCC-cchhhcCCCCCcEEE
Q 038551           35 ETTRMSLMQNAIQNLTEI-PTC--PRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLEN-LPLGIFNLVSLQHLD  110 (366)
Q Consensus        35 ~L~~L~l~~~~~~~l~~~-~~~--~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~-l~~~~~~l~~L~~L~  110 (366)
                      .++.++++++.+..  .. ..+  ++++.+++.+|.+...++. +..+++|++|++++|..... ++..+..+++|++|+
T Consensus        48 ~~~~l~l~~~~~~~--~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           48 LWQTLDLTGKNLHP--DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             TSSEEECTTCBCCH--HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             hheeeccccccCCH--HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            47889998887763  11 333  7899999999988776666 55789999999999943323 777788999999999


Q ss_pred             ccccccc-cccccccCCCCCCEEEcccccccCc--cChhhhcCCcCCcEEEeecC-CccccccccccccCCchhhhhhhh
Q 038551          111 ISWTGIT-TLPIELKYLVNLKCLNLEYTFRLSR--IPQQVISDLKMLRALRMFEC-GFNVELEADSILFGDSEVLVEELL  186 (366)
Q Consensus       111 l~~~~~~-~l~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~l~  186 (366)
                      +++|.++ ..+..+..+++|++|++++|..++.  ++.. +.++++|++|++.+| .+++            ......+.
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~------------~~~~~~~~  191 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTE------------KHVQVAVA  191 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCH------------HHHHHHHH
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcCh------------HHHHHHHH
Confidence            9999887 5666788899999999999755553  4443 778999999999999 7774            23566778


Q ss_pred             cCc-ccceeeeccccc----hhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccC-ccceEeccc
Q 038551          187 VLK-HLNLLTITLQSF----GALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFN-DLEELKIDA  260 (366)
Q Consensus       187 ~l~-~L~~L~l~~~~~----~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~l~~~~  260 (366)
                      .++ +|+.|++++|..    ..++..  +.++++  ++.|++..+..++...+..+..+++|++|++++| .+.......
T Consensus       192 ~l~~~L~~L~l~~~~~~~~~~~l~~~--~~~~~~--L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  267 (336)
T 2ast_B          192 HVSETITQLNLSGYRKNLQKSDLSTL--VRRCPN--LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE  267 (336)
T ss_dssp             HSCTTCCEEECCSCGGGSCHHHHHHH--HHHCTT--CSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred             hcccCCCEEEeCCCcccCCHHHHHHH--HhhCCC--CCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH
Confidence            889 999999998853    334332  223343  6668888876666666667888999999999999 443221111


Q ss_pred             cccccccccCCCCCcceeeee
Q 038551          261 GELKRIREICGFHSLQKVFYK  281 (366)
Q Consensus       261 ~~~~~~~~~~~~~~L~~L~l~  281 (366)
                      .        ..+++|+.|+++
T Consensus       268 l--------~~~~~L~~L~l~  280 (336)
T 2ast_B          268 L--------GEIPTLKTLQVF  280 (336)
T ss_dssp             G--------GGCTTCCEEECT
T ss_pred             H--------hcCCCCCEEecc
Confidence            1        558999999886

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.72  E-value=1.7e-17  Score=149.56  Aligned_cols=218  Identities=15%  Similarity=0.130  Sum_probs=156.7

Q ss_pred             ccEEEcccCCccc--cCCC-C-------CCCCccEEEccCCCCc-cccchhh-cCCCCCCEEEccCCCCCCCcchhhcCC
Q 038551           36 TTRMSLMQNAIQN--LTEI-P-------TCPRLRTLFLPSNHLG-TVSNNFF-HSMASLRVLILSYNRSLENLPLGIFNL  103 (366)
Q Consensus        36 L~~L~l~~~~~~~--l~~~-~-------~~~~L~~L~l~~~~~~-~i~~~~~-~~l~~L~~L~l~~~~~~~~l~~~~~~l  103 (366)
                      ++.|++++|.+..  ++.. .       .+++|++|++++|.+. .+|..++ ..+++|++|++++| .++.+|..++.+
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l  143 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAEL  143 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHH
Confidence            8889999988865  3332 2       6889999999999986 5666533 78999999999999 566557777766


Q ss_pred             -----CCCcEEEcccccccccc-ccccCCCCCCEEEcccccccCc--cChh-hhcCCcCCcEEEeecCCccccccccccc
Q 038551          104 -----VSLQHLDISWTGITTLP-IELKYLVNLKCLNLEYTFRLSR--IPQQ-VISDLKMLRALRMFECGFNVELEADSIL  174 (366)
Q Consensus       104 -----~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~--~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~  174 (366)
                           ++|++|++++|.++.++ ..++.+++|++|++++|...+.  ++.. .+..+++|++|++.+|.+..        
T Consensus       144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~--------  215 (312)
T 1wwl_A          144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET--------  215 (312)
T ss_dssp             HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC--------
T ss_pred             HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc--------
Confidence                 89999999999998777 5688999999999999655443  2222 12788999999999999874        


Q ss_pred             cCCchhhh-hhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCcc
Q 038551          175 FGDSEVLV-EELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDL  253 (366)
Q Consensus       175 ~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l  253 (366)
                         ....+ ..+..+++|+.|++++|.+.+.........+.+  ++.|+++++.- +..+ ..+.  ++|++|++++|.+
T Consensus       216 ---~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~--L~~L~Ls~N~l-~~ip-~~~~--~~L~~L~Ls~N~l  286 (312)
T 1wwl_A          216 ---PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ--LNSLNLSFTGL-KQVP-KGLP--AKLSVLDLSYNRL  286 (312)
T ss_dssp             ---HHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT--CCEEECTTSCC-SSCC-SSCC--SEEEEEECCSSCC
T ss_pred             ---hHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC--CCEEECCCCcc-Chhh-hhcc--CCceEEECCCCCC
Confidence               11222 334577899999999998887543222333444  55566655432 2221 1122  7999999999988


Q ss_pred             ceEeccccccccccccCCCCCcceeeee
Q 038551          254 EELKIDAGELKRIREICGFHSLQKVFYK  281 (366)
Q Consensus       254 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~  281 (366)
                      +.++. .         ..+++|+.|+++
T Consensus       287 ~~~p~-~---------~~l~~L~~L~L~  304 (312)
T 1wwl_A          287 DRNPS-P---------DELPQVGNLSLK  304 (312)
T ss_dssp             CSCCC-T---------TTSCEEEEEECT
T ss_pred             CCChh-H---------hhCCCCCEEecc
Confidence            87743 2         568888888875

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.72  E-value=1.3e-16  Score=135.10  Aligned_cols=165  Identities=24%  Similarity=0.325  Sum_probs=138.1

Q ss_pred             cEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCC
Q 038551           15 NFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRS   92 (366)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~   92 (366)
                      ..+.+.++++..+|.- -.++++.|++++|.++.++..  ..+++|++|++++|.+..+++.+|..+++|++|++++| .
T Consensus        10 ~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~   87 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-Q   87 (208)
T ss_dssp             TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred             CEEEecCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-c
Confidence            4678888888888632 357999999999999997764  78999999999999999998887889999999999999 5


Q ss_pred             CCCcch-hhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccc
Q 038551           93 LENLPL-GIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEA  170 (366)
Q Consensus        93 ~~~l~~-~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  170 (366)
                      ++.++. .+.++++|++|++++|.++.++.. +..+++|++|++++ +.+..++...+..+++|++|++.+|.+..    
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----  162 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPWDC----  162 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCCeec----
Confidence            666654 468999999999999999988765 78999999999999 46667777668889999999999998764    


Q ss_pred             cccccCCchhhhhhhhcCcccceeeeccccch
Q 038551          171 DSILFGDSEVLVEELLVLKHLNLLTITLQSFG  202 (366)
Q Consensus       171 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  202 (366)
                                      .++.|+.|++..|...
T Consensus       163 ----------------~~~~l~~L~~~~n~~~  178 (208)
T 2o6s_A          163 ----------------TCPGIRYLSEWINKHS  178 (208)
T ss_dssp             ----------------CTTTTHHHHHHHHHCT
T ss_pred             ----------------CCCCHHHHHHHHHhCC
Confidence                            3567777777776655

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.71  E-value=1.5e-16  Score=141.92  Aligned_cols=169  Identities=22%  Similarity=0.313  Sum_probs=148.4

Q ss_pred             CccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCC
Q 038551           13 KENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRS   92 (366)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~   92 (366)
                      ..+.+++.++++.+++.+..+++|+.|++++|.++.++....+++|++|++++|.+..++.  +..+++|++|++++| .
T Consensus        47 ~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n-~  123 (291)
T 1h6t_A           47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHN-G  123 (291)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTS-C
T ss_pred             cccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCC-c
Confidence            4577888999999999899999999999999999998777899999999999999988765  889999999999999 6


Q ss_pred             CCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccc
Q 038551           93 LENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADS  172 (366)
Q Consensus        93 ~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  172 (366)
                      ++.++ .+..+++|++|++++|.++.+ ..+..+++|++|++++| .+..++.  +..+++|++|++.+|.+.+      
T Consensus       124 i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~N~i~~------  192 (291)
T 1h6t_A          124 ISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISD------  192 (291)
T ss_dssp             CCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCB------
T ss_pred             CCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEECCCCcCCC------
Confidence            67664 588999999999999999988 46899999999999995 6666655  8899999999999999875      


Q ss_pred             cccCCchhhhhhhhcCcccceeeeccccchhh
Q 038551          173 ILFGDSEVLVEELLVLKHLNLLTITLQSFGAL  204 (366)
Q Consensus       173 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  204 (366)
                               ...+..+++|+.|++++|.+...
T Consensus       193 ---------l~~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          193 ---------LRALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             ---------CGGGTTCTTCSEEEEEEEEEECC
T ss_pred             ---------ChhhccCCCCCEEECcCCcccCC
Confidence                     23478899999999999987653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.70  E-value=2.7e-16  Score=135.18  Aligned_cols=148  Identities=26%  Similarity=0.313  Sum_probs=127.0

Q ss_pred             EEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCC
Q 038551           16 FLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSL   93 (366)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~   93 (366)
                      .+++.++++..+|.-. .++|+.|++++|.++.+++.  ..+++|++|++++|.++.+++.+|..+++|++|++++| .+
T Consensus        23 ~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l  100 (229)
T 3e6j_A           23 TVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QL  100 (229)
T ss_dssp             EEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred             EeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cC
Confidence            5788888899987532 38999999999999997543  78899999999999999998887899999999999999 66


Q ss_pred             CCcch-hhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccc
Q 038551           94 ENLPL-GIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV  166 (366)
Q Consensus        94 ~~l~~-~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  166 (366)
                      +.++. .+..+++|++|++++|.++.+|..+..+++|++|++++ +.+..++...+..+++|+.|++.+|.+..
T Consensus       101 ~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            66654 46889999999999999999998899999999999999 57777776668889999999999998763

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=9.7e-17  Score=134.67  Aligned_cols=154  Identities=19%  Similarity=0.226  Sum_probs=120.6

Q ss_pred             CCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEE
Q 038551           31 GMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLD  110 (366)
Q Consensus        31 ~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~  110 (366)
                      +.+++|+.|++++|.+..++....+++|++|++++|.+..++.  +..+++|++|++++|......+..+..+++|++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            4567889999999988888755788899999999987776653  77889999999999844334667788889999999


Q ss_pred             cccccccc-ccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCc
Q 038551          111 ISWTGITT-LPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLK  189 (366)
Q Consensus       111 l~~~~~~~-l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  189 (366)
                      +++|.++. .+..+..+++|++|++++|..++.++.  +..+++|++|++.+|.+.+               ...+..++
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~---------------~~~l~~l~  181 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD---------------YRGIEDFP  181 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC---------------CTTGGGCS
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC---------------hHHhccCC
Confidence            99998874 566688889999999998665777763  7888899999999988874               22677788


Q ss_pred             ccceeeeccccchh
Q 038551          190 HLNLLTITLQSFGA  203 (366)
Q Consensus       190 ~L~~L~l~~~~~~~  203 (366)
                      +|+.|++++|.+..
T Consensus       182 ~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          182 KLNQLYAFSQTIGG  195 (197)
T ss_dssp             SCCEEEECBC----
T ss_pred             CCCEEEeeCcccCC
Confidence            89999998887653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.69  E-value=1.1e-16  Score=156.34  Aligned_cols=161  Identities=22%  Similarity=0.332  Sum_probs=98.9

Q ss_pred             CCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhc
Q 038551           22 VGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF  101 (366)
Q Consensus        22 ~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~  101 (366)
                      ..+.++.....+++|+.|++++|.+..++....+++|+.|++++|.+..+++  +..+++|+.|++++| .+..+| .+.
T Consensus        31 ~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~-~l~  106 (605)
T 1m9s_A           31 KSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS-SLK  106 (605)
T ss_dssp             SCTTSEECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCT-TST
T ss_pred             CCcccccchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCCh-hhc
Confidence            3344444445566666777777766666555666677777777776666655  566677777777776 445544 366


Q ss_pred             CCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhh
Q 038551          102 NLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVL  181 (366)
Q Consensus       102 ~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  181 (366)
                      .+++|++|++++|.+..++ .+..+++|+.|++++| .+..++ . +..+++|+.|++.+|.+.+             ..
T Consensus       107 ~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~-~-l~~l~~L~~L~Ls~N~l~~-------------~~  169 (605)
T 1m9s_A          107 DLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDIT-V-LSRLTKLDTLSLEDNQISD-------------IV  169 (605)
T ss_dssp             TCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCG-G-GGSCTTCSEEECCSSCCCC-------------CG
T ss_pred             cCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCch-h-hcccCCCCEEECcCCcCCC-------------ch
Confidence            6667777777777666654 3566667777777663 444442 2 6666677777777666654             11


Q ss_pred             hhhhhcCcccceeeeccccchhhH
Q 038551          182 VEELLVLKHLNLLTITLQSFGALQ  205 (366)
Q Consensus       182 ~~~l~~l~~L~~L~l~~~~~~~~~  205 (366)
                      +  +..+++|+.|++++|.+..++
T Consensus       170 ~--l~~l~~L~~L~Ls~N~i~~l~  191 (605)
T 1m9s_A          170 P--LAGLTKLQNLYLSKNHISDLR  191 (605)
T ss_dssp             G--GTTCTTCCEEECCSSCCCBCG
T ss_pred             h--hccCCCCCEEECcCCCCCCCh
Confidence            1  556666666666666555443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.68  E-value=4.1e-16  Score=143.40  Aligned_cols=172  Identities=25%  Similarity=0.280  Sum_probs=143.9

Q ss_pred             cEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--C-CCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCC
Q 038551           15 NFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--P-TCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR   91 (366)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~-~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~   91 (366)
                      ..+.+.++++..+|... .+.++.|++++|.++.++..  . .+++|++|++++|.+..+++..|..+++|++|++++| 
T Consensus        21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-   98 (361)
T ss_dssp             TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred             CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-
Confidence            47899999999997532 36799999999999998765  4 8999999999999999998877999999999999999 


Q ss_pred             CCCCcc-hhhcCCCCCcEEEcccccccccc-ccccCCCCCCEEEcccccccCccChhhh---cCCcCCcEEEeecCCccc
Q 038551           92 SLENLP-LGIFNLVSLQHLDISWTGITTLP-IELKYLVNLKCLNLEYTFRLSRIPQQVI---SDLKMLRALRMFECGFNV  166 (366)
Q Consensus        92 ~~~~l~-~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~  166 (366)
                      .++.++ ..+.++++|++|++++|.++.++ ..+..+++|++|++++ +.+..+|...+   ..+++|+.|++.+|.+..
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            566665 45889999999999999999774 5689999999999999 67888887755   578999999999999985


Q ss_pred             cccccccccCCchhhhhhhhcCcc--cceeeeccccch
Q 038551          167 ELEADSILFGDSEVLVEELLVLKH--LNLLTITLQSFG  202 (366)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~  202 (366)
                                   .....+..++.  ++.|++.+|...
T Consensus       178 -------------l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          178 -------------LPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             -------------CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             -------------cCHHHhhhccHhhcceEEecCCCcc
Confidence                         44456666766  478999988765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=4.6e-16  Score=130.49  Aligned_cols=150  Identities=21%  Similarity=0.284  Sum_probs=127.2

Q ss_pred             CccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCC
Q 038551           13 KENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRS   92 (366)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~   92 (366)
                      ..+.+.+.++++.++|.+..+++|+.|++++|.++.++....+++|++|++++|.+.......+..+++|++|++++|..
T Consensus        45 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i  124 (197)
T 4ezg_A           45 SLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH  124 (197)
T ss_dssp             TCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBC
T ss_pred             CccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCcc
Confidence            56788899999999999999999999999999888877668899999999999999763333388999999999999954


Q ss_pred             CCCcchhhcCCCCCcEEEccccc-cccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccc
Q 038551           93 LENLPLGIFNLVSLQHLDISWTG-ITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV  166 (366)
Q Consensus        93 ~~~l~~~~~~l~~L~~L~l~~~~-~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  166 (366)
                      ....+..+..+++|++|++++|. ++.+| .+..+++|++|++++| .+..++ . +..+++|++|++.+|.+.+
T Consensus       125 ~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~-~-l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          125 DDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR-G-IEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             BGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT-T-GGGCSSCCEEEECBC----
T ss_pred             CcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH-H-hccCCCCCEEEeeCcccCC
Confidence            44577889999999999999997 88887 6899999999999994 666676 3 8899999999999999864

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.68  E-value=7.4e-16  Score=138.65  Aligned_cols=228  Identities=16%  Similarity=0.079  Sum_probs=136.9

Q ss_pred             CCccEEEccCCCCcc-----ccchhhcCCCCCCEEEccCCCCCCCcchhh--cCCCCCcEEEccccccccc-c----ccc
Q 038551           56 PRLRTLFLPSNHLGT-----VSNNFFHSMASLRVLILSYNRSLENLPLGI--FNLVSLQHLDISWTGITTL-P----IEL  123 (366)
Q Consensus        56 ~~L~~L~l~~~~~~~-----i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~--~~l~~L~~L~l~~~~~~~l-~----~~l  123 (366)
                      ..++.+.+.++.++.     +..  +..+++|++|++++|...+..|..+  ..+++|++|++++|.++.. +    ..+
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALR--VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHH--HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             cceeEEEEeCCcCCHHHHHHHHH--hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            356777777776642     111  2235668889998885555666666  7888889999988887742 2    224


Q ss_pred             cCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhh--hhhhcCcccceeeeccccc
Q 038551          124 KYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLV--EELLVLKHLNLLTITLQSF  201 (366)
Q Consensus       124 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~  201 (366)
                      ..+++|++|++++| .+..++...+.++++|++|++++|.+.+.           ....  ..+..+++|+.|++++|.+
T Consensus       142 ~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----------~~~~~~~~~~~l~~L~~L~Ls~N~l  209 (310)
T 4glp_A          142 WLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGLGE-----------RGLMAALCPHKFPAIQNLALRNTGM  209 (310)
T ss_dssp             TBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTCHH-----------HHHHTTSCTTSSCCCCSCBCCSSCC
T ss_pred             hhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCccc-----------hhhhHHHhhhcCCCCCEEECCCCCC
Confidence            57888999999884 45555544477888899999988887641           1122  2235678888888888888


Q ss_pred             hhhHhHhh--hcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccccccccccCCCCCcceee
Q 038551          202 GALQRLLS--YCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVF  279 (366)
Q Consensus       202 ~~~~~l~~--~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~  279 (366)
                      ..++....  +..+.+|....|.-+.+....+..+..+..+++|++|++++|.++.++..           -+++|+.|+
T Consensus       210 ~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~-----------~~~~L~~L~  278 (310)
T 4glp_A          210 ETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKG-----------LPAKLRVLD  278 (310)
T ss_dssp             CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSC-----------CCSCCSCEE
T ss_pred             CchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhh-----------hcCCCCEEE
Confidence            76554211  12333322222332333333333322233346888888888877755421           124555554


Q ss_pred             eecccceeEEeeccCccccccccccceEEeecCcccCCcccccccCCCCCCC
Q 038551          280 YKILKIEARDMACTCSQYQACPRGLTKFEEHPLKRLECAELKELPLDCNHGL  331 (366)
Q Consensus       280 l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~~~~~~~L~~L~l~~n~~~  331 (366)
                      ++           ++ .++.+|.           ...+++|+.|++++|++.
T Consensus       279 Ls-----------~N-~l~~~~~-----------~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          279 LS-----------SN-RLNRAPQ-----------PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CC-----------SC-CCCSCCC-----------TTSCCCCSCEECSSTTTS
T ss_pred             CC-----------CC-cCCCCch-----------hhhCCCccEEECcCCCCC
Confidence            42           22 2222222           356677888888888774

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.67  E-value=9.1e-16  Score=131.02  Aligned_cols=148  Identities=28%  Similarity=0.342  Sum_probs=121.8

Q ss_pred             cEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCC
Q 038551           15 NFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRS   92 (366)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~   92 (366)
                      ..+++.++++..+|.-. .++++.|++++|.++.++..  ..+++|++|++++|.+..+.+..|..+++|++|++++| .
T Consensus        14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-K   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-C
T ss_pred             CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-c
Confidence            56788888999887532 27899999999999987754  78889999999999998886666889999999999999 6


Q ss_pred             CCCcchh-hcCCCCCcEEEcccccccccc-ccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcc
Q 038551           93 LENLPLG-IFNLVSLQHLDISWTGITTLP-IELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFN  165 (366)
Q Consensus        93 ~~~l~~~-~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  165 (366)
                      ++.+|.. +.++++|++|++++|.++.++ ..+..+++|++|++++ +.+..++...+..+++|+.|++.+|.+.
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            6677654 678899999999999988774 4588899999999998 5666776655888889999999998875

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.67  E-value=3.9e-17  Score=160.00  Aligned_cols=300  Identities=18%  Similarity=0.145  Sum_probs=152.4

Q ss_pred             CCccEEEecCCCcccC--CCCC-CCCcccEEEcccC-Cccc--cCCC-CCCCCccEEEccCCCCccccchh----hcCCC
Q 038551           12 EKENFLVLAGVGLTEA--PSIG-MWKETTRMSLMQN-AIQN--LTEI-PTCPRLRTLFLPSNHLGTVSNNF----FHSMA   80 (366)
Q Consensus        12 ~~~~~~~~~~~~~~~~--~~~~-~~~~L~~L~l~~~-~~~~--l~~~-~~~~~L~~L~l~~~~~~~i~~~~----~~~l~   80 (366)
                      ...+.+.+.++.+.+.  ..+. .+++|+.|++.+| .+..  ++.. ..+++|++|++++|.++......    ...++
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~  184 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT  184 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence            3556667766655443  2232 4677888888777 4443  3333 46777777777777654322211    23566


Q ss_pred             CCCEEEccCCC-CCC--CcchhhcCCCCCcEEEcccc-ccccccccccCCCCCCEEEcccccc-----------------
Q 038551           81 SLRVLILSYNR-SLE--NLPLGIFNLVSLQHLDISWT-GITTLPIELKYLVNLKCLNLEYTFR-----------------  139 (366)
Q Consensus        81 ~L~~L~l~~~~-~~~--~l~~~~~~l~~L~~L~l~~~-~~~~l~~~l~~l~~L~~L~l~~~~~-----------------  139 (366)
                      +|+.|++++|. .++  .++..+..+++|++|++++| .++.++..+..+++|++|+++.+..                 
T Consensus       185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~  264 (594)
T 2p1m_B          185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC  264 (594)
T ss_dssp             CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred             cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence            77777777763 011  11222244577777777766 3334444444445555554332210                 


Q ss_pred             --------c-----CccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccch-hhH
Q 038551          140 --------L-----SRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFG-ALQ  205 (366)
Q Consensus       140 --------~-----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~  205 (366)
                              .     ..++.. +..+++|++|++.+|.+.+            ......+..+++|+.|++.++... +++
T Consensus       265 ~~L~~Ls~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~l~~------------~~l~~~~~~~~~L~~L~l~~~~~~~~l~  331 (594)
T 2p1m_B          265 KELRCLSGFWDAVPAYLPAV-YSVCSRLTTLNLSYATVQS------------YDLVKLLCQCPKLQRLWVLDYIEDAGLE  331 (594)
T ss_dssp             TTCCEEECCBTCCGGGGGGG-HHHHTTCCEEECTTCCCCH------------HHHHHHHTTCTTCCEEEEEGGGHHHHHH
T ss_pred             CCcccccCCcccchhhHHHH-HHhhCCCCEEEccCCCCCH------------HHHHHHHhcCCCcCEEeCcCccCHHHHH
Confidence                    0     001110 1234455555555555432            112222334444444444433110 111


Q ss_pred             hHhh-hcccCcc-----------------------------cceeeeccccCCCCCcchhhhc-cCCcCcEEEec-----
Q 038551          206 RLLS-YCRLGSI-----------------------------STQCLCLRHLNNSNSLSVFAFA-SLRHLRTLQLY-----  249 (366)
Q Consensus       206 ~l~~-~~~l~~l-----------------------------~l~~L~~~~~~~~~~~~~~~l~-~~~~L~~L~l~-----  249 (366)
                      .+.. +++++.|                             .++.|.+ .+..++...+..+. .+++|++|+++     
T Consensus       332 ~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~  410 (594)
T 2p1m_B          332 VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPK  410 (594)
T ss_dssp             HHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTT
T ss_pred             HHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCC
Confidence            1110 1111110                             1222311 23333333333333 46777777777     


Q ss_pred             cC-ccceEeccccccccccccCCCCCcceeeee--------------cccceeEEeeccCcccc---------ccccccc
Q 038551          250 FN-DLEELKIDAGELKRIREICGFHSLQKVFYK--------------ILKIEARDMACTCSQYQ---------ACPRGLT  305 (366)
Q Consensus       250 ~~-~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~--------------l~~l~~L~l~~~c~~l~---------~~~~~L~  305 (366)
                      +| .++..+.+.. ....+  ..+++|+.|+++              .+.++.|+++ +|. ++         .+|+ |+
T Consensus       411 ~~~~l~~~~~~~~-~~~l~--~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~-~~~-i~~~~~~~l~~~~~~-L~  484 (594)
T 2p1m_B          411 APDYLTLEPLDIG-FGAIV--EHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVA-FAG-DSDLGMHHVLSGCDS-LR  484 (594)
T ss_dssp             CCCTTTCCCTHHH-HHHHH--HHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEE-SCC-SSHHHHHHHHHHCTT-CC
T ss_pred             CcccccCCchhhH-HHHHH--hhCCCccEEeecCcccHHHHHHHHHhchhccEeecc-CCC-CcHHHHHHHHhcCCC-cC
Confidence            23 4443321100 00011  456788888886              4557889998 775 32         2688 99


Q ss_pred             eEEeecCc---------ccCCcccccccCCCCCCC
Q 038551          306 KFEEHPLK---------RLECAELKELPLDCNHGL  331 (366)
Q Consensus       306 ~L~l~~~~---------~~~~~~L~~L~l~~n~~~  331 (366)
                      +|+|++|+         +..|++|+.|++++|+.+
T Consensus       485 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          485 KLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             EEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             EEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            99999998         456899999999999874

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.67  E-value=2e-16  Score=145.54  Aligned_cols=174  Identities=16%  Similarity=0.202  Sum_probs=81.6

Q ss_pred             EecCCCcccC-CCCCCC-CcccEEEcccCCccccCC-----C-CCCC-CccEEEccCCCCccccchhhcCC-----CCCC
Q 038551           18 VLAGVGLTEA-PSIGMW-KETTRMSLMQNAIQNLTE-----I-PTCP-RLRTLFLPSNHLGTVSNNFFHSM-----ASLR   83 (366)
Q Consensus        18 ~~~~~~~~~~-~~~~~~-~~L~~L~l~~~~~~~l~~-----~-~~~~-~L~~L~l~~~~~~~i~~~~~~~l-----~~L~   83 (366)
                      .+..+++.+. |.+... ++|+.|++++|.+...+.     . ..++ +|++|++++|.++......+..+     ++|+
T Consensus         4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~   83 (362)
T 3goz_A            4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT   83 (362)
T ss_dssp             ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred             ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence            3444444433 333222 336666666666665442     1 3444 56666666666654433223332     6666


Q ss_pred             EEEccCCCCCCC-cchh----hcCC-CCCcEEEcccccccccccc-----ccC-CCCCCEEEcccccccCc----cChhh
Q 038551           84 VLILSYNRSLEN-LPLG----IFNL-VSLQHLDISWTGITTLPIE-----LKY-LVNLKCLNLEYTFRLSR----IPQQV  147 (366)
Q Consensus        84 ~L~l~~~~~~~~-l~~~----~~~l-~~L~~L~l~~~~~~~l~~~-----l~~-l~~L~~L~l~~~~~~~~----~~~~~  147 (366)
                      +|++++| .++. .+..    +..+ ++|++|++++|.++..+..     +.. .++|++|++++|.....    ++.. 
T Consensus        84 ~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-  161 (362)
T 3goz_A           84 SLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI-  161 (362)
T ss_dssp             EEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH-
T ss_pred             EEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH-
Confidence            6666666 3332 2221    2333 5666666666665543321     223 24666666666322211    1111 


Q ss_pred             hcCCc-CCcEEEeecCCccccccccccccCCchhhhhhhhcC-cccceeeeccccch
Q 038551          148 ISDLK-MLRALRMFECGFNVELEADSILFGDSEVLVEELLVL-KHLNLLTITLQSFG  202 (366)
Q Consensus       148 ~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~  202 (366)
                      +...+ +|++|++.+|.+.+.         ....+...+... ++|+.|++++|.+.
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~---------~~~~l~~~l~~~~~~L~~L~Ls~N~i~  209 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASK---------NCAELAKFLASIPASVTSLDLSANLLG  209 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGS---------CHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HhcCCccccEeeecCCCCchh---------hHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence            23333 566666666655531         011222333444 35666666655544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.67  E-value=1.2e-15  Score=130.31  Aligned_cols=149  Identities=20%  Similarity=0.253  Sum_probs=119.4

Q ss_pred             cEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC---CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCC
Q 038551           15 NFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI---PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR   91 (366)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~---~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~   91 (366)
                      ..+++.++++..+|... .+.++.|++++|.++.++..   ..+++|++|++++|.+..+++..|..+++|++|++++| 
T Consensus        14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-   91 (220)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred             CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-
Confidence            37788888888886422 35678999999999987432   68889999999999998888877889999999999999 


Q ss_pred             CCCCcc-hhhcCCCCCcEEEccccccccc-cccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccc
Q 038551           92 SLENLP-LGIFNLVSLQHLDISWTGITTL-PIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV  166 (366)
Q Consensus        92 ~~~~l~-~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  166 (366)
                      .++.++ ..+.++++|++|++++|.++.+ |..+..+++|++|++++ +.+..++...+..+++|+.|++.+|.+..
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            455544 5588899999999999998876 45688899999999998 45566644448888999999999988764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=2.6e-16  Score=138.19  Aligned_cols=163  Identities=21%  Similarity=0.196  Sum_probs=129.7

Q ss_pred             EecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc
Q 038551           18 VLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP   97 (366)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~   97 (366)
                      .+.++++.+++.+..+++|+.|++++|.++.++....+++|+.|++++|.+..+++  +..+++|++|++++| .++.+|
T Consensus        25 ~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~  101 (263)
T 1xeu_A           25 NLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN-RLKNLN  101 (263)
T ss_dssp             HHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS-CCSCCT
T ss_pred             HhcCCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC-ccCCcC
Confidence            34566677777777788899999999988888755788889999999998888876  778899999999998 667666


Q ss_pred             hhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCC
Q 038551           98 LGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGD  177 (366)
Q Consensus        98 ~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  177 (366)
                      .. .. ++|++|++++|.++.++ .+..+++|++|++++ +.+..++.  +..+++|++|++.+|.+.+           
T Consensus       102 ~~-~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~~--l~~l~~L~~L~L~~N~i~~-----------  164 (263)
T 1xeu_A          102 GI-PS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRN-NKLKSIVM--LGFLSKLEVLDLHGNEITN-----------  164 (263)
T ss_dssp             TC-CC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTT-SCCCBCGG--GGGCTTCCEEECTTSCCCB-----------
T ss_pred             cc-cc-CcccEEEccCCccCCCh-hhcCcccccEEECCC-CcCCCChH--HccCCCCCEEECCCCcCcc-----------
Confidence            53 33 88999999999888776 478888999999988 45666653  7888899999999988875           


Q ss_pred             chhhhhhhhcCcccceeeeccccchhh
Q 038551          178 SEVLVEELLVLKHLNLLTITLQSFGAL  204 (366)
Q Consensus       178 ~~~~~~~l~~l~~L~~L~l~~~~~~~~  204 (366)
                        .  ..+..+++|+.|++++|.+...
T Consensus       165 --~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          165 --T--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             --C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             --h--HHhccCCCCCEEeCCCCcccCC
Confidence              2  5677788888899888877654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.66  E-value=1.1e-15  Score=130.41  Aligned_cols=150  Identities=19%  Similarity=0.258  Sum_probs=129.2

Q ss_pred             cEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCc-chhhcCCCCCcEEEccccc
Q 038551           37 TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL-PLGIFNLVSLQHLDISWTG  115 (366)
Q Consensus        37 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~  115 (366)
                      +.+++.++.++.+|.. -.++++.|++++|.+..+++..|..+++|++|++++| .++.+ |..+.++++|++|++++|.
T Consensus        14 ~~v~c~~~~l~~iP~~-l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTN-LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSS-CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCc-cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCc
Confidence            5788999999998865 2268999999999999998877999999999999999 55544 7789999999999999999


Q ss_pred             ccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCccccee
Q 038551          116 ITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLL  194 (366)
Q Consensus       116 ~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  194 (366)
                      ++.+|.. +..+++|++|++++ +.+..++...+..+++|++|++.+|.+..             .....+..+++|+.|
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------------~~~~~~~~l~~L~~L  157 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDNKLQT-------------IAKGTFSPLRAIQTM  157 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSC-------------CCTTTTTTCTTCCEE
T ss_pred             CCccCHhHccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCCCcCCE-------------ECHHHHhCCCCCCEE
Confidence            9999876 68999999999999 56666665558899999999999999986             444567789999999


Q ss_pred             eeccccch
Q 038551          195 TITLQSFG  202 (366)
Q Consensus       195 ~l~~~~~~  202 (366)
                      ++++|...
T Consensus       158 ~L~~N~~~  165 (220)
T 2v9t_B          158 HLAQNPFI  165 (220)
T ss_dssp             ECCSSCEE
T ss_pred             EeCCCCcC
Confidence            99999765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.66  E-value=3.8e-17  Score=151.72  Aligned_cols=221  Identities=18%  Similarity=0.176  Sum_probs=147.2

Q ss_pred             cCCCcccC-CCCCCCCcccEEEcccCCccc-----cCCC-CCCCCccEEEccCCCCcc----ccchh------hcCCCCC
Q 038551           20 AGVGLTEA-PSIGMWKETTRMSLMQNAIQN-----LTEI-PTCPRLRTLFLPSNHLGT----VSNNF------FHSMASL   82 (366)
Q Consensus        20 ~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~~----i~~~~------~~~l~~L   82 (366)
                      ...++..+ ..+..+++|+.|++++|.+..     ++.. ..+++|++|++++|.+..    +|..+      +..+++|
T Consensus        17 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L   96 (386)
T 2ca6_A           17 TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL   96 (386)
T ss_dssp             CSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred             CHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcc
Confidence            33344444 345667899999999998876     2222 678999999999975543    34432      3678999


Q ss_pred             CEEEccCCCCCCC-----cchhhcCCCCCcEEEcccccccc-----ccccccCC---------CCCCEEEccccccc-Cc
Q 038551           83 RVLILSYNRSLEN-----LPLGIFNLVSLQHLDISWTGITT-----LPIELKYL---------VNLKCLNLEYTFRL-SR  142 (366)
Q Consensus        83 ~~L~l~~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~-----l~~~l~~l---------~~L~~L~l~~~~~~-~~  142 (366)
                      ++|++++| .++.     +|..+..+++|++|++++|.++.     ++..+..+         ++|++|++++|... ..
T Consensus        97 ~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~  175 (386)
T 2ca6_A           97 HTVRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS  175 (386)
T ss_dssp             CEEECCSC-CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred             cEEECCCC-cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence            99999999 4443     67778889999999999998862     33334444         89999999996443 23


Q ss_pred             cCh--hhhcCCcCCcEEEeecCCccccccccccccCCchhhhh-hhhcCcccceeeeccccchh-----hHhHhhhcccC
Q 038551          143 IPQ--QVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVE-ELLVLKHLNLLTITLQSFGA-----LQRLLSYCRLG  214 (366)
Q Consensus       143 ~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~-----~~~l~~~~~l~  214 (366)
                      ++.  ..+..+++|++|++.+|.+...         +...... .+..+++|+.|++++|.+..     ++.  .+..++
T Consensus       176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~---------g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~--~l~~~~  244 (386)
T 2ca6_A          176 MKEWAKTFQSHRLLHTVKMVQNGIRPE---------GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI--ALKSWP  244 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCCHH---------HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH--HGGGCT
T ss_pred             HHHHHHHHHhCCCcCEEECcCCCCCHh---------HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH--HHccCC
Confidence            331  2266788999999999988741         0112344 77788999999999988742     222  133344


Q ss_pred             cccceeeeccccCCCCCcch----hhh--ccCCcCcEEEeccCccce
Q 038551          215 SISTQCLCLRHLNNSNSLSV----FAF--ASLRHLRTLQLYFNDLEE  255 (366)
Q Consensus       215 ~l~l~~L~~~~~~~~~~~~~----~~l--~~~~~L~~L~l~~~~l~~  255 (366)
                      +  ++.|+++++. +.....    ..+  ..+++|++|++++|.++.
T Consensus       245 ~--L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          245 N--LRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             T--CCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             C--cCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            3  4556665543 222211    123  237788888888887665

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.65  E-value=8.8e-16  Score=149.95  Aligned_cols=169  Identities=22%  Similarity=0.315  Sum_probs=147.2

Q ss_pred             CccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCC
Q 038551           13 KENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRS   92 (366)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~   92 (366)
                      ..+.+.+.++.+..++.+..+++|+.|++++|.+..++....+++|+.|++++|.+..++.  +..+++|+.|++++| .
T Consensus        44 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N-~  120 (605)
T 1m9s_A           44 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHN-G  120 (605)
T ss_dssp             TCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTT--STTCTTCCEEECTTS-C
T ss_pred             CCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChh--hccCCCCCEEEecCC-C
Confidence            4556778888899999999999999999999999998777899999999999999988774  889999999999999 6


Q ss_pred             CCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccc
Q 038551           93 LENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADS  172 (366)
Q Consensus        93 ~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  172 (366)
                      +..++ .+..+++|+.|++++|.++.+ ..+..+++|+.|++++| .+..++.  +..+++|+.|++.+|.+.+      
T Consensus       121 l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~------  189 (605)
T 1m9s_A          121 ISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISD------  189 (605)
T ss_dssp             CCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCB------
T ss_pred             CCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEECcCCCCCC------
Confidence            66665 488999999999999999988 56899999999999995 5555554  7899999999999999875      


Q ss_pred             cccCCchhhhhhhhcCcccceeeeccccchhh
Q 038551          173 ILFGDSEVLVEELLVLKHLNLLTITLQSFGAL  204 (366)
Q Consensus       173 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  204 (366)
                               +..+..+++|+.|++++|.+...
T Consensus       190 ---------l~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          190 ---------LRALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             ---------CGGGTTCTTCSEEECCSEEEECC
T ss_pred             ---------ChHHccCCCCCEEEccCCcCcCC
Confidence                     24678899999999999987754

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.65  E-value=2.7e-16  Score=141.57  Aligned_cols=221  Identities=14%  Similarity=0.106  Sum_probs=148.7

Q ss_pred             CcccEEEcccCCccc--c---CCCCCCCCccEEEccCCCCccccchhh--cCCCCCCEEEccCCCCCCCcc----hhhcC
Q 038551           34 KETTRMSLMQNAIQN--L---TEIPTCPRLRTLFLPSNHLGTVSNNFF--HSMASLRVLILSYNRSLENLP----LGIFN  102 (366)
Q Consensus        34 ~~L~~L~l~~~~~~~--l---~~~~~~~~L~~L~l~~~~~~~i~~~~~--~~l~~L~~L~l~~~~~~~~l~----~~~~~  102 (366)
                      .+++.+.+.++.+..  +   .....+++|++|++++|.+....+..+  ..+++|++|++++|...+..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            457888888877754  1   111344669999999998865443335  789999999999994443333    23457


Q ss_pred             CCCCcEEEcccccccccc-ccccCCCCCCEEEcccccccCc--cChh-hhcCCcCCcEEEeecCCccccccccccccCCc
Q 038551          103 LVSLQHLDISWTGITTLP-IELKYLVNLKCLNLEYTFRLSR--IPQQ-VISDLKMLRALRMFECGFNVELEADSILFGDS  178 (366)
Q Consensus       103 l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~--~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  178 (366)
                      +++|++|++++|.+..++ ..++.+++|++|++++|+..+.  ++.. .+..+++|++|++.+|.++.           .
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------l  212 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-----------P  212 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-----------H
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-----------h
Confidence            889999999999998666 4588999999999999654432  2211 13578899999999999864           1


Q ss_pred             hhhhhh-hhcCcccceeeeccccchhh-H-hHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccce
Q 038551          179 EVLVEE-LLVLKHLNLLTITLQSFGAL-Q-RLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEE  255 (366)
Q Consensus       179 ~~~~~~-l~~l~~L~~L~l~~~~~~~~-~-~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~  255 (366)
                      ...+.. +..+++|++|++++|.+.+. + .+..+..+++  ++.|+++++.- +..+ ..+  .++|++|++++|.++.
T Consensus       213 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~--L~~L~Ls~N~l-~~lp-~~~--~~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          213 TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSA--LNSLNLSFAGL-EQVP-KGL--PAKLRVLDLSSNRLNR  286 (310)
T ss_dssp             HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTT--CCCEECCSSCC-CSCC-SCC--CSCCSCEECCSCCCCS
T ss_pred             HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCc--CCEEECCCCCC-Cchh-hhh--cCCCCEEECCCCcCCC
Confidence            122222 46789999999999988765 2 2333322233  44455554322 2222 112  3799999999998886


Q ss_pred             EeccccccccccccCCCCCcceeeee
Q 038551          256 LKIDAGELKRIREICGFHSLQKVFYK  281 (366)
Q Consensus       256 l~~~~~~~~~~~~~~~~~~L~~L~l~  281 (366)
                      ++. .         ..+++|+.|+++
T Consensus       287 ~~~-~---------~~l~~L~~L~L~  302 (310)
T 4glp_A          287 APQ-P---------DELPEVDNLTLD  302 (310)
T ss_dssp             CCC-T---------TSCCCCSCEECS
T ss_pred             Cch-h---------hhCCCccEEECc
Confidence            643 1         557888888875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.64  E-value=2.8e-17  Score=152.64  Aligned_cols=252  Identities=15%  Similarity=0.088  Sum_probs=156.3

Q ss_pred             ccccCCC-CCCCCccEEEccCCCCccccc----hhhcCCCCCCEEEccCCCCCC----Ccchhh-------cCCCCCcEE
Q 038551           46 IQNLTEI-PTCPRLRTLFLPSNHLGTVSN----NFFHSMASLRVLILSYNRSLE----NLPLGI-------FNLVSLQHL  109 (366)
Q Consensus        46 ~~~l~~~-~~~~~L~~L~l~~~~~~~i~~----~~~~~l~~L~~L~l~~~~~~~----~l~~~~-------~~l~~L~~L  109 (366)
                      +..++.. ..+++|++|++++|.++....    ..+..+++|++|++++| .+.    .+|..+       ..+++|++|
T Consensus        21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L   99 (386)
T 2ca6_A           21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTV   99 (386)
T ss_dssp             HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred             HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEE
Confidence            3334433 678899999999998875322    22668999999999997 333    345444       688999999


Q ss_pred             Ecccccccc-----ccccccCCCCCCEEEcccccccCccChh---hhcCC---------cCCcEEEeecCCccccccccc
Q 038551          110 DISWTGITT-----LPIELKYLVNLKCLNLEYTFRLSRIPQQ---VISDL---------KMLRALRMFECGFNVELEADS  172 (366)
Q Consensus       110 ~l~~~~~~~-----l~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~~---------~~L~~L~l~~~~~~~~~~~~~  172 (366)
                      ++++|.++.     +|..+..+++|++|++++|......+..   .+..+         ++|++|++.+|.+...     
T Consensus       100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~-----  174 (386)
T 2ca6_A          100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG-----  174 (386)
T ss_dssp             ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG-----
T ss_pred             ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH-----
Confidence            999999875     6777899999999999996543222221   12233         8999999999998741     


Q ss_pred             cccCCchhhhhhhhcCcccceeeeccccch--hhHhHh--hhcccCcccceeeeccccCCCCC---cch-hhhccCCcCc
Q 038551          173 ILFGDSEVLVEELLVLKHLNLLTITLQSFG--ALQRLL--SYCRLGSISTQCLCLRHLNNSNS---LSV-FAFASLRHLR  244 (366)
Q Consensus       173 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~l~--~~~~l~~l~l~~L~~~~~~~~~~---~~~-~~l~~~~~L~  244 (366)
                          ........+..+++|+.|++++|.+.  ++..+.  .+.++++  ++.|+++.+. ++.   ..+ ..+..+++|+
T Consensus       175 ----~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~--L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~  247 (386)
T 2ca6_A          175 ----SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE--LKVLDLQDNT-FTHLGSSALAIALKSWPNLR  247 (386)
T ss_dssp             ----GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT--CCEEECCSSC-CHHHHHHHHHHHGGGCTTCC
T ss_pred             ----HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCC--ccEEECcCCC-CCcHHHHHHHHHHccCCCcC
Confidence                12233367788999999999999887  222221  2334444  5556666543 221   111 3467888999


Q ss_pred             EEEeccCccceEeccccccccccccCCCCCcceeeeecccceeEEeeccCccc-cccccccceEEeecCc
Q 038551          245 TLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEARDMACTCSQY-QACPRGLTKFEEHPLK  313 (366)
Q Consensus       245 ~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~l-~~~~~~L~~L~l~~~~  313 (366)
                      +|++++|.++........  ..+....+++|+.|+++-..+..-.+..-...+ ..+|+ |++|++++|+
T Consensus       248 ~L~L~~n~i~~~~~~~l~--~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~-L~~L~l~~N~  314 (386)
T 2ca6_A          248 ELGLNDCLLSARGAAAVV--DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD-LLFLELNGNR  314 (386)
T ss_dssp             EEECTTCCCCHHHHHHHH--HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT-CCEEECTTSB
T ss_pred             EEECCCCCCchhhHHHHH--HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCC-ceEEEccCCc
Confidence            999999987754221110  111002267777776651111000000000011 11566 8888888777

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.63  E-value=2.3e-16  Score=138.47  Aligned_cols=172  Identities=15%  Similarity=0.176  Sum_probs=131.1

Q ss_pred             CCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEc
Q 038551           32 MWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDI  111 (366)
Q Consensus        32 ~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l  111 (366)
                      .+.+++.+++.++.+++++....+++|+.|++++|.+..++ . +..+++|++|++++| .++.++. +.++++|++|++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~-l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L   92 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-G-MQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-T-GGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred             HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-H-HhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence            45677778888888888775577888999999999888877 3 778899999999988 6677776 888889999999


Q ss_pred             cccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCccc
Q 038551          112 SWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHL  191 (366)
Q Consensus       112 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L  191 (366)
                      ++|.++.+|....  ++|++|++++ +.+..++.  +.++++|+.|++++|.+.+             .  ..+..+++|
T Consensus        93 ~~N~l~~l~~~~~--~~L~~L~L~~-N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-------------~--~~l~~l~~L  152 (263)
T 1xeu_A           93 NRNRLKNLNGIPS--ACLSRLFLDN-NELRDTDS--LIHLKNLEILSIRNNKLKS-------------I--VMLGFLSKL  152 (263)
T ss_dssp             CSSCCSCCTTCCC--SSCCEEECCS-SCCSBSGG--GTTCTTCCEEECTTSCCCB-------------C--GGGGGCTTC
T ss_pred             CCCccCCcCcccc--CcccEEEccC-CccCCChh--hcCcccccEEECCCCcCCC-------------C--hHHccCCCC
Confidence            9998888775433  8889999988 46666653  7788888888888888874             1  356777888


Q ss_pred             ceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEe
Q 038551          192 NLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELK  257 (366)
Q Consensus       192 ~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~  257 (366)
                      +.|++++|.+..+.                              .+..+++|+.|++++|.+...+
T Consensus       153 ~~L~L~~N~i~~~~------------------------------~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          153 EVLDLHGNEITNTG------------------------------GLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             CEEECTTSCCCBCT------------------------------TSTTCCCCCEEEEEEEEEECCC
T ss_pred             CEEECCCCcCcchH------------------------------HhccCCCCCEEeCCCCcccCCc
Confidence            88888777654331                              1556778888888888666544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.62  E-value=6.4e-15  Score=126.54  Aligned_cols=150  Identities=22%  Similarity=0.257  Sum_probs=129.4

Q ss_pred             ccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcEEEcccc
Q 038551           36 TTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIFNLVSLQHLDISWT  114 (366)
Q Consensus        36 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~  114 (366)
                      -+.++++++.+..+|.. -.++|++|++++|.+..+++..|..+++|++|++++| .++.+| ..+..+++|++|++++|
T Consensus        21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC
Confidence            56789999999988865 2389999999999999887777999999999999999 667776 44689999999999999


Q ss_pred             cccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccce
Q 038551          115 GITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNL  193 (366)
Q Consensus       115 ~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  193 (366)
                      .++.++.. +..+++|++|++++ +.+..+|.. +..+++|++|++.+|.+..             .....+..+++|+.
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~-~~~l~~L~~L~L~~N~l~~-------------~~~~~~~~l~~L~~  163 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCC-NKLTELPRG-IERLTHLTHLALDQNQLKS-------------IPHGAFDRLSSLTH  163 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTT-GGGCTTCSEEECCSSCCCC-------------CCTTTTTTCTTCCE
T ss_pred             cCCccChhHhCcchhhCeEeccC-CcccccCcc-cccCCCCCEEECCCCcCCc-------------cCHHHHhCCCCCCE
Confidence            99988765 68999999999999 577788887 7899999999999999985             33456788899999


Q ss_pred             eeeccccch
Q 038551          194 LTITLQSFG  202 (366)
Q Consensus       194 L~l~~~~~~  202 (366)
                      |++.+|.+.
T Consensus       164 L~l~~N~~~  172 (229)
T 3e6j_A          164 AYLFGNPWD  172 (229)
T ss_dssp             EECTTSCBC
T ss_pred             EEeeCCCcc
Confidence            999998765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.62  E-value=6.6e-15  Score=124.47  Aligned_cols=150  Identities=25%  Similarity=0.308  Sum_probs=126.2

Q ss_pred             cEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcch-hhcCCCCCcEEEccccc
Q 038551           37 TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPL-GIFNLVSLQHLDISWTG  115 (366)
Q Consensus        37 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~  115 (366)
                      +.+++.++.++.+|.. ..++|++|++++|.+..+++.++..+++|++|++++| .++.++. .+..+++|++|++++|.
T Consensus        10 ~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc
Confidence            5678888888887754 3468999999999999998887899999999999999 6666664 46889999999999999


Q ss_pred             ccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCccccee
Q 038551          116 ITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLL  194 (366)
Q Consensus       116 ~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  194 (366)
                      ++.++.. +..+++|++|++++ +.+..++...+..+++|++|++.+|.+..             .....+..+++|+.|
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-------------~~~~~~~~l~~L~~L  153 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNT-NQLQSLPDGVFDKLTQLKDLRLYQNQLKS-------------VPDGVFDRLTSLQYI  153 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSC-------------CCTTTTTTCTTCCEE
T ss_pred             CCccCHhHhcCccCCCEEEcCC-CcCcccCHhHhccCCcCCEEECCCCccce-------------eCHHHhccCCCccEE
Confidence            9988765 68999999999999 56777777667899999999999999875             334456788999999


Q ss_pred             eeccccch
Q 038551          195 TITLQSFG  202 (366)
Q Consensus       195 ~l~~~~~~  202 (366)
                      ++++|...
T Consensus       154 ~l~~N~~~  161 (208)
T 2o6s_A          154 WLHDNPWD  161 (208)
T ss_dssp             ECCSCCBC
T ss_pred             EecCCCee
Confidence            99988654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.62  E-value=4.3e-16  Score=143.36  Aligned_cols=258  Identities=16%  Similarity=0.192  Sum_probs=159.4

Q ss_pred             EEcccCCccc-cCCC-CCCCCccEEEccCCCCccccc----hhhcCCC-CCCEEEccCCCCCCCcchhhcCC-----CCC
Q 038551           39 MSLMQNAIQN-LTEI-PTCPRLRTLFLPSNHLGTVSN----NFFHSMA-SLRVLILSYNRSLENLPLGIFNL-----VSL  106 (366)
Q Consensus        39 L~l~~~~~~~-l~~~-~~~~~L~~L~l~~~~~~~i~~----~~~~~l~-~L~~L~l~~~~~~~~l~~~~~~l-----~~L  106 (366)
                      +.++.+.+++ ++.. ....+|++|++++|.++.++.    ..+..++ +|++|++++|......+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            5667777776 3333 555669999999998887765    5577888 89999999994333334445443     889


Q ss_pred             cEEEcccccccccccc-----ccCC-CCCCEEEcccccccCccChhhhc----C-CcCCcEEEeecCCcccccccccccc
Q 038551          107 QHLDISWTGITTLPIE-----LKYL-VNLKCLNLEYTFRLSRIPQQVIS----D-LKMLRALRMFECGFNVELEADSILF  175 (366)
Q Consensus       107 ~~L~l~~~~~~~l~~~-----l~~l-~~L~~L~l~~~~~~~~~~~~~~~----~-~~~L~~L~l~~~~~~~~~~~~~~~~  175 (366)
                      ++|++++|.++..+..     +..+ ++|++|++++| .++..+...+.    . .++|++|++++|.+.+.        
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~--------  153 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK--------  153 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS--------
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH--------
Confidence            9999999988754432     4555 78999999985 45555443232    3 36899999999988751        


Q ss_pred             CCchhhhhhhhcCc-ccceeeeccccchhhH--hHhh-hcccCcccceeeeccccCCCCCcch----hhhcc-CCcCcEE
Q 038551          176 GDSEVLVEELLVLK-HLNLLTITLQSFGALQ--RLLS-YCRLGSISTQCLCLRHLNNSNSLSV----FAFAS-LRHLRTL  246 (366)
Q Consensus       176 ~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~--~l~~-~~~l~~l~l~~L~~~~~~~~~~~~~----~~l~~-~~~L~~L  246 (366)
                       ........+...+ +|+.|++++|.+....  .+.. +...+. .++.|+++.+. +.....    ..+.. .++|++|
T Consensus       154 -~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~-~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L  230 (362)
T 3goz_A          154 -SSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPA-SVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSL  230 (362)
T ss_dssp             -CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCT-TCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEE
T ss_pred             -HHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCC-CCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEE
Confidence             1234455566665 8999999998876432  2221 222221 35556666543 333222    12334 4589999


Q ss_pred             EeccCccceEeccccccccccccCCCCCcceeeeeccc---ceeEEeeccCccccccccccceEEeecCc
Q 038551          247 QLYFNDLEELKIDAGELKRIREICGFHSLQKVFYKILK---IEARDMACTCSQYQACPRGLTKFEEHPLK  313 (366)
Q Consensus       247 ~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~---l~~L~l~~~c~~l~~~~~~L~~L~l~~~~  313 (366)
                      ++++|.++..+.....  ...  ..+++|+.|+++-..   ...-.+..-...+...++ |++|++++|+
T Consensus       231 ~Ls~N~l~~~~~~~l~--~~~--~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~-L~~LdL~~N~  295 (362)
T 3goz_A          231 NLCLNCLHGPSLENLK--LLK--DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK-IILVDKNGKE  295 (362)
T ss_dssp             ECCSSCCCCCCHHHHH--HTT--TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCE-EEEECTTSCB
T ss_pred             ECcCCCCCcHHHHHHH--HHH--hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCc-eEEEecCCCc
Confidence            9999988766542211  111  557889999887211   100000000112223556 8888888887

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.61  E-value=7.1e-15  Score=125.44  Aligned_cols=150  Identities=17%  Similarity=0.242  Sum_probs=127.0

Q ss_pred             cEEEcccCCccccCCCCCCCCccEEEccCCCCccc-cchhhcCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcEEEcccc
Q 038551           37 TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTV-SNNFFHSMASLRVLILSYNRSLENLP-LGIFNLVSLQHLDISWT  114 (366)
Q Consensus        37 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i-~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~  114 (366)
                      +.++++++.++.+|.. -...++.|++++|.+..+ +..+|..+++|++|++++| .++.++ ..+.++++|++|++++|
T Consensus        14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC
Confidence            5899999999998864 234678999999999887 4456889999999999999 566665 47899999999999999


Q ss_pred             cccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccce
Q 038551          115 GITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNL  193 (366)
Q Consensus       115 ~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  193 (366)
                      .++.++.. +..+++|++|++++ +.+..++...+..+++|++|++.+|.+..             ..+..+..+++|+.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------------~~~~~~~~l~~L~~  157 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDNQITT-------------VAPGAFDTLHSLST  157 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTSCCCC-------------BCTTTTTTCTTCCE
T ss_pred             ccCccCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCCCcCCE-------------ECHHHhcCCCCCCE
Confidence            99988765 89999999999999 45666654448899999999999999986             45677888999999


Q ss_pred             eeeccccch
Q 038551          194 LTITLQSFG  202 (366)
Q Consensus       194 L~l~~~~~~  202 (366)
                      |++++|.+.
T Consensus       158 L~L~~N~l~  166 (220)
T 2v70_A          158 LNLLANPFN  166 (220)
T ss_dssp             EECCSCCEE
T ss_pred             EEecCcCCc
Confidence            999999876

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.60  E-value=9.7e-15  Score=141.22  Aligned_cols=183  Identities=23%  Similarity=0.234  Sum_probs=100.6

Q ss_pred             cccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcccc
Q 038551           35 ETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWT  114 (366)
Q Consensus        35 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~  114 (366)
                      +++.|++++|.++.+|... .++|++|++++|.++.+| .   .+++|++|++++| .++.+|. +.+  +|++|++++|
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip-~---~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP-E---LPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN  130 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC-C---CCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS
T ss_pred             CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc-c---ccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC
Confidence            5666666666666655431 255666666666666655 2   2566666666666 4444555 433  6666666666


Q ss_pred             ccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCccccee
Q 038551          115 GITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLL  194 (366)
Q Consensus       115 ~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  194 (366)
                      .++.+|.   .+++|+.|++++ +.++.+|.    .+++|++|++.+|.+..              ++. +.  ++|+.|
T Consensus       131 ~l~~lp~---~l~~L~~L~Ls~-N~l~~lp~----~l~~L~~L~Ls~N~L~~--------------lp~-l~--~~L~~L  185 (571)
T 3cvr_A          131 QLTMLPE---LPALLEYINADN-NQLTMLPE----LPTSLEVLSVRNNQLTF--------------LPE-LP--ESLEAL  185 (571)
T ss_dssp             CCSCCCC---CCTTCCEEECCS-SCCSCCCC----CCTTCCEEECCSSCCSC--------------CCC-CC--TTCCEE
T ss_pred             cCCCCCC---cCccccEEeCCC-CccCcCCC----cCCCcCEEECCCCCCCC--------------cch-hh--CCCCEE
Confidence            6666665   456666666666 34444543    34566666666666653              111 22  566666


Q ss_pred             eeccccchhhHhHhhhccc--CcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccce
Q 038551          195 TITLQSFGALQRLLSYCRL--GSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEE  255 (366)
Q Consensus       195 ~l~~~~~~~~~~l~~~~~l--~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~  255 (366)
                      ++++|.+..++.+..  ++  ..-.+..|+++++. ++..+ ..+..+++|+.|++++|.++.
T Consensus       186 ~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~-l~~lp-~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          186 DVSTNLLESLPAVPV--RNHHSEETEIFFRCRENR-ITHIP-ENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             ECCSSCCSSCCCCC----------CCEEEECCSSC-CCCCC-GGGGGSCTTEEEECCSSSCCH
T ss_pred             ECcCCCCCchhhHHH--hhhcccccceEEecCCCc-ceecC-HHHhcCCCCCEEEeeCCcCCC
Confidence            666666665544111  11  00001445554432 22222 125568888999998887764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.54  E-value=1.1e-14  Score=142.50  Aligned_cols=152  Identities=16%  Similarity=0.166  Sum_probs=85.5

Q ss_pred             CCCCCcccEEEcccCC-ccccCC---------------C-CCCCCccEEEccCCCCccccchhhc-CCCCCCEEEccCCC
Q 038551           30 IGMWKETTRMSLMQNA-IQNLTE---------------I-PTCPRLRTLFLPSNHLGTVSNNFFH-SMASLRVLILSYNR   91 (366)
Q Consensus        30 ~~~~~~L~~L~l~~~~-~~~l~~---------------~-~~~~~L~~L~l~~~~~~~i~~~~~~-~l~~L~~L~l~~~~   91 (366)
                      +.++++|+.|++.++. +.++..               . ..+++|+.|++++|.++......+. .+++|++|++++|.
T Consensus        62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  141 (594)
T 2p1m_B           62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE  141 (594)
T ss_dssp             HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred             HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence            3445677777777764 222110               0 2466777777777766533222232 57777777777774


Q ss_pred             CCCC--cchhhcCCCCCcEEEcccccccc-----ccccccCCCCCCEEEcccccccCccC----hhhhcCCcCCcEEEee
Q 038551           92 SLEN--LPLGIFNLVSLQHLDISWTGITT-----LPIELKYLVNLKCLNLEYTFRLSRIP----QQVISDLKMLRALRMF  160 (366)
Q Consensus        92 ~~~~--l~~~~~~l~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~  160 (366)
                      .++.  ++....++++|++|++++|.++.     ++.....+++|+.|++++|.  ..+.    ..++.++++|++|++.
T Consensus       142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~  219 (594)
T 2p1m_B          142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLN  219 (594)
T ss_dssp             EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECC
T ss_pred             CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecC
Confidence            3333  34444567777777777776542     23333466677777777754  1221    1113456777777777


Q ss_pred             cCCccccccccccccCCchhhhhhhhcCcccceeee
Q 038551          161 ECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTI  196 (366)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  196 (366)
                      +|....             ..+..+..+++|+.|++
T Consensus       220 ~~~~~~-------------~l~~~~~~~~~L~~L~l  242 (594)
T 2p1m_B          220 RAVPLE-------------KLATLLQRAPQLEELGT  242 (594)
T ss_dssp             TTSCHH-------------HHHHHHHHCTTCSEEEC
T ss_pred             CCCcHH-------------HHHHHHhcCCcceEccc
Confidence            763221             24444455555555554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.54  E-value=3.2e-14  Score=130.73  Aligned_cols=151  Identities=25%  Similarity=0.316  Sum_probs=129.3

Q ss_pred             CccEEEecCCCcccCC--CCC-CCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEc
Q 038551           13 KENFLVLAGVGLTEAP--SIG-MWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLIL   87 (366)
Q Consensus        13 ~~~~~~~~~~~~~~~~--~~~-~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l   87 (366)
                      ..+.+++.++.+..++  .+. ++++|+.|++++|.++.++..  ..+++|+.|++++|.+..+++..|..+++|++|++
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  119 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL  119 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence            3567899999999884  355 899999999999999998754  88999999999999999998888999999999999


Q ss_pred             cCCCCCCCc-chhhcCCCCCcEEEccccccccccccc----cCCCCCCEEEcccccccCccChhhhcCCcC--CcEEEee
Q 038551           88 SYNRSLENL-PLGIFNLVSLQHLDISWTGITTLPIEL----KYLVNLKCLNLEYTFRLSRIPQQVISDLKM--LRALRMF  160 (366)
Q Consensus        88 ~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l~~~l----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~--L~~L~l~  160 (366)
                      ++| .++.+ +..+.++++|++|++++|.++.+|..+    ..+++|++|++++ +.+..++...+..++.  ++.|++.
T Consensus       120 ~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~~~l~~l~l~  197 (361)
T 2xot_A          120 YNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQKLPAWVKNGLYLH  197 (361)
T ss_dssp             CSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS-SCCCCCCHHHHHHSCHHHHTTEECC
T ss_pred             CCC-cccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHHhhhccHhhcceEEec
Confidence            999 55554 677899999999999999999998764    6799999999999 6777888665777776  4889999


Q ss_pred             cCCcc
Q 038551          161 ECGFN  165 (366)
Q Consensus       161 ~~~~~  165 (366)
                      +|.+.
T Consensus       198 ~N~~~  202 (361)
T 2xot_A          198 NNPLE  202 (361)
T ss_dssp             SSCEE
T ss_pred             CCCcc
Confidence            99876

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.54  E-value=3.8e-14  Score=115.50  Aligned_cols=130  Identities=23%  Similarity=0.212  Sum_probs=91.5

Q ss_pred             CCcccEEEcccCCcc--ccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEE
Q 038551           33 WKETTRMSLMQNAIQ--NLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHL  109 (366)
Q Consensus        33 ~~~L~~L~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L  109 (366)
                      .++|+.|++++|.+.  .+|.. ..+++|++|++++|.+..+ .. +..+++|++|++++|.....+|..+.++++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SS-CCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hh-hccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            367888888888777  56665 6777888888888877766 33 6777888888888873333366666667788888


Q ss_pred             Ecccccccccc--ccccCCCCCCEEEcccccccCccCh---hhhcCCcCCcEEEeecCCcc
Q 038551          110 DISWTGITTLP--IELKYLVNLKCLNLEYTFRLSRIPQ---QVISDLKMLRALRMFECGFN  165 (366)
Q Consensus       110 ~l~~~~~~~l~--~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~  165 (366)
                      ++++|.++.+|  ..+..+++|++|++++| .+...+.   ..+..+++|++|++.+|.+.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            88888777665  45777777888887774 4445544   33667777777777777655

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.53  E-value=7.2e-14  Score=127.83  Aligned_cols=215  Identities=17%  Similarity=0.166  Sum_probs=159.5

Q ss_pred             CccEEEecCCCcccCC--CCCCCCcccEEEcccCCccc-cCCC--CCCCCccE-EEccCCCCccccchhhcCCCCCCEEE
Q 038551           13 KENFLVLAGVGLTEAP--SIGMWKETTRMSLMQNAIQN-LTEI--PTCPRLRT-LFLPSNHLGTVSNNFFHSMASLRVLI   86 (366)
Q Consensus        13 ~~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~-l~~~--~~~~~L~~-L~l~~~~~~~i~~~~~~~l~~L~~L~   86 (366)
                      ..+.+++.++.++.+|  .+.++++|+.|++++|.+.+ ++..  ..++++.. +.+.+|.+..+++++|..+++|++|+
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~  110 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  110 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence            4678899999999995  48999999999999999865 5544  67787765 56667899999888899999999999


Q ss_pred             ccCCCCCCCcch-hhcCCCCCcEEEcccc-cccccccc-ccCC-CCCCEEEcccccccCccChhhhcCCcCCcEEEeec-
Q 038551           87 LSYNRSLENLPL-GIFNLVSLQHLDISWT-GITTLPIE-LKYL-VNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFE-  161 (366)
Q Consensus        87 l~~~~~~~~l~~-~~~~l~~L~~L~l~~~-~~~~l~~~-l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-  161 (366)
                      +++| .++.+|. .+....++.+|++.++ .+..++.. +..+ ..++.|++++ +.++.++.. .....+|+++.+.+ 
T Consensus       111 l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~-~f~~~~L~~l~l~~~  187 (350)
T 4ay9_X          111 ISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNS-AFNGTQLDELNLSDN  187 (350)
T ss_dssp             EEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTT-SSTTEEEEEEECTTC
T ss_pred             cccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChh-hccccchhHHhhccC
Confidence            9999 6666553 4556678889999765 78877764 4555 4689999998 678888877 44567899999976 


Q ss_pred             CCccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCC
Q 038551          162 CGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLR  241 (366)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~  241 (366)
                      |.+..             .....+..+++|+.|++++|.+..++.- .+.+++.     |...++..+...+  .+..++
T Consensus       188 n~l~~-------------i~~~~f~~l~~L~~LdLs~N~l~~lp~~-~~~~L~~-----L~~l~~~~l~~lP--~l~~l~  246 (350)
T 4ay9_X          188 NNLEE-------------LPNDVFHGASGPVILDISRTRIHSLPSY-GLENLKK-----LRARSTYNLKKLP--TLEKLV  246 (350)
T ss_dssp             TTCCC-------------CCTTTTTTEECCSEEECTTSCCCCCCSS-SCTTCCE-----EECTTCTTCCCCC--CTTTCC
T ss_pred             CcccC-------------CCHHHhccCcccchhhcCCCCcCccChh-hhccchH-----hhhccCCCcCcCC--CchhCc
Confidence            44542             2234568899999999999998887642 1334333     4444444433333  366788


Q ss_pred             cCcEEEeccC
Q 038551          242 HLRTLQLYFN  251 (366)
Q Consensus       242 ~L~~L~l~~~  251 (366)
                      +|+.+++.++
T Consensus       247 ~L~~l~l~~~  256 (350)
T 4ay9_X          247 ALMEASLTYP  256 (350)
T ss_dssp             SCCEEECSCH
T ss_pred             ChhhCcCCCC
Confidence            8888888654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.52  E-value=1.7e-13  Score=132.54  Aligned_cols=184  Identities=19%  Similarity=0.139  Sum_probs=138.6

Q ss_pred             cCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEcc
Q 038551            9 INKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILS   88 (366)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~   88 (366)
                      |.......+++.++++.++|.-. +++|+.|++++|.++.+|  ..+++|++|++++|.++.+|.  +..  +|++|+++
T Consensus        56 C~~~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls  128 (571)
T 3cvr_A           56 CLINQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVD  128 (571)
T ss_dssp             HHHTTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECC
T ss_pred             cccCCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECC
Confidence            44457888999999999986522 489999999999999988  578999999999999988887  433  99999999


Q ss_pred             CCCCCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccc
Q 038551           89 YNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVEL  168 (366)
Q Consensus        89 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  168 (366)
                      +| .++.+|.   .+++|++|++++|.++.+|.   .+++|++|++++ +.++.+|.  +.  ++|+.|++++|.++...
T Consensus       129 ~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~-N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp  196 (571)
T 3cvr_A          129 NN-QLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRN-NQLTFLPE--LP--ESLEALDVSTNLLESLP  196 (571)
T ss_dssp             SS-CCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCCC--CC--TTCCEEECCSSCCSSCC
T ss_pred             CC-cCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCC-CCCCCcch--hh--CCCCEEECcCCCCCchh
Confidence            99 6677887   68999999999999998886   678999999999 46666776  44  89999999999987411


Q ss_pred             cccccccCCchhhhhhh-hcCcccceeeeccccchhhHhHhhhcccCcccceeeecccc
Q 038551          169 EADSILFGDSEVLVEEL-LVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHL  226 (366)
Q Consensus       169 ~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~  226 (366)
                                 .+...+ ...+.|+.|++++|.+..+|..  +.++++  +..|+++++
T Consensus       197 -----------~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~--l~~l~~--L~~L~L~~N  240 (571)
T 3cvr_A          197 -----------AVPVRNHHSEETEIFFRCRENRITHIPEN--ILSLDP--TCTIILEDN  240 (571)
T ss_dssp             -----------CCC--------CCEEEECCSSCCCCCCGG--GGGSCT--TEEEECCSS
T ss_pred             -----------hHHHhhhcccccceEEecCCCcceecCHH--HhcCCC--CCEEEeeCC
Confidence                       111011 1123338999999988877652  233554  444555543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.51  E-value=6.2e-14  Score=111.87  Aligned_cols=125  Identities=25%  Similarity=0.238  Sum_probs=86.9

Q ss_pred             CCcccEEEcccCCcc--ccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEE
Q 038551           33 WKETTRMSLMQNAIQ--NLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHL  109 (366)
Q Consensus        33 ~~~L~~L~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L  109 (366)
                      .++++.|++++|.++  .++.. ..+++|++|++++|.+..+ .. +..+++|++|++++|...+.+|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-AN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TT-CCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hh-hhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            467888888888887  56655 6778888888888877766 33 7778888888888883333366666677788888


Q ss_pred             Ecccccccccc--ccccCCCCCCEEEcccccccCccCh---hhhcCCcCCcEEEee
Q 038551          110 DISWTGITTLP--IELKYLVNLKCLNLEYTFRLSRIPQ---QVISDLKMLRALRMF  160 (366)
Q Consensus       110 ~l~~~~~~~l~--~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~  160 (366)
                      ++++|.++.++  ..+..+++|++|++++| .+...+.   ..+..+++|+.|++.
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence            88888777654  55777777777777774 4444443   336666777766543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.51  E-value=3e-14  Score=117.09  Aligned_cols=133  Identities=15%  Similarity=0.203  Sum_probs=69.0

Q ss_pred             CCCCCCCcccEEEcccCCccccCCCCC-CCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhh-cCCCC
Q 038551           28 PSIGMWKETTRMSLMQNAIQNLTEIPT-CPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGI-FNLVS  105 (366)
Q Consensus        28 ~~~~~~~~L~~L~l~~~~~~~l~~~~~-~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~~l~~  105 (366)
                      +.+..+.+|+.|++++|.++.++.... .++|++|++++|.+..+ +. +..+++|++|++++| .++.+|+.+ ..+++
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DG-FPLLRRLKTLLVNNN-RICRIGEGLDQALPD   89 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CC-CCCCSSCCEEECCSS-CCCEECSCHHHHCTT
T ss_pred             HhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cc-cccCCCCCEEECCCC-cccccCcchhhcCCC
Confidence            334445566666666666665544322 23666666666666555 22 555666666666666 444444332 55556


Q ss_pred             CcEEEccccccccccc--cccCCCCCCEEEcccccccCccChh---hhcCCcCCcEEEeecCCc
Q 038551          106 LQHLDISWTGITTLPI--ELKYLVNLKCLNLEYTFRLSRIPQQ---VISDLKMLRALRMFECGF  164 (366)
Q Consensus       106 L~~L~l~~~~~~~l~~--~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~  164 (366)
                      |++|++++|.++.+|.  .+..+++|++|++++| .+..+|..   .+..+++|+.|++.+|..
T Consensus        90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            6666666665555554  4555555555555553 33333331   234445555555444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=9.3e-14  Score=114.17  Aligned_cols=128  Identities=22%  Similarity=0.264  Sum_probs=113.7

Q ss_pred             cCCccEEEecCCCcccCCCCCCCC-cccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccC
Q 038551           11 KEKENFLVLAGVGLTEAPSIGMWK-ETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSY   89 (366)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~   89 (366)
                      ....+.+++.++.+..++.+..+. +|+.|++++|.++.++....+++|++|++++|.+..+++.++..+++|++|++++
T Consensus        18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~   97 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN   97 (176)
T ss_dssp             TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred             cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC
Confidence            356678899999999988777766 9999999999999985558999999999999999999888778999999999999


Q ss_pred             CCCCCCcch--hhcCCCCCcEEEcccccccccccc----ccCCCCCCEEEcccccc
Q 038551           90 NRSLENLPL--GIFNLVSLQHLDISWTGITTLPIE----LKYLVNLKCLNLEYTFR  139 (366)
Q Consensus        90 ~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~l~~~----l~~l~~L~~L~l~~~~~  139 (366)
                      | .++.+|.  .+..+++|++|++++|.+..+|..    +..+++|+.|+++.|..
T Consensus        98 N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           98 N-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             C-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             C-cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            9 6788886  788999999999999999988874    88999999999998543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.48  E-value=3.1e-13  Score=112.79  Aligned_cols=124  Identities=20%  Similarity=0.277  Sum_probs=78.3

Q ss_pred             EEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcEEEcccccc
Q 038551           38 RMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIFNLVSLQHLDISWTGI  116 (366)
Q Consensus        38 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~  116 (366)
                      .++++++.++.+|.. -.++|++|++++|.+..+|.. +..+++|++|++++| .++.++ ..|.++++|++|++++|.+
T Consensus        14 ~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~-~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           14 VVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             EEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGG-GGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHH-hhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCcc
Confidence            455555555555533 124566666666666666643 666777777777777 444443 4466677777777777777


Q ss_pred             ccccc-cccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcc
Q 038551          117 TTLPI-ELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFN  165 (366)
Q Consensus       117 ~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  165 (366)
                      +.++. .+..+++|++|++++ +.+..++...+..+++|+.|++.+|.+.
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCee
Confidence            66554 366777777777777 4555666555667777777777777664

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.47  E-value=3.7e-13  Score=112.21  Aligned_cols=128  Identities=22%  Similarity=0.247  Sum_probs=80.1

Q ss_pred             cEEEcccCCccccCCCCCCCCccEEEccCCCCccccch-hhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccccc
Q 038551           37 TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNN-FFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTG  115 (366)
Q Consensus        37 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~  115 (366)
                      +.++++++.++.+|.. -..++++|++++|.++.+++. ++..+++|++|++++|...+..|..+.++++|++|++++|.
T Consensus        11 ~~l~~s~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TEEECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CEEEcCCCCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            4556666666555543 112666677777766665542 46667777777777773333335666777777777777777


Q ss_pred             ccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccc
Q 038551          116 ITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV  166 (366)
Q Consensus       116 ~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  166 (366)
                      ++.++.. +..+++|++|++++| .+..++...+..+++|++|++.+|.+..
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           90 IKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            7765543 667777777777774 4443333336677777777777777653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.47  E-value=2.5e-13  Score=110.58  Aligned_cols=132  Identities=21%  Similarity=0.227  Sum_probs=112.8

Q ss_pred             CCccEEEecCCCcc--cCCC-CCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEcc
Q 038551           12 EKENFLVLAGVGLT--EAPS-IGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILS   88 (366)
Q Consensus        12 ~~~~~~~~~~~~~~--~~~~-~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~   88 (366)
                      ...+.+++.++.+.  .+|. +..+++|+.|++++|.++.+.....+++|++|++++|.+....+..+..+++|++|+++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  103 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS  103 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence            56788899999998  7754 58899999999999999998444889999999999999987445547789999999999


Q ss_pred             CCCCCCCcc--hhhcCCCCCcEEEccccccccccc----cccCCCCCCEEEcccccccCccCh
Q 038551           89 YNRSLENLP--LGIFNLVSLQHLDISWTGITTLPI----ELKYLVNLKCLNLEYTFRLSRIPQ  145 (366)
Q Consensus        89 ~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~l~~----~l~~l~~L~~L~l~~~~~~~~~~~  145 (366)
                      +| .++.+|  ..+..+++|++|++++|.++.+|.    .+..+++|++|++.+| ....+|.
T Consensus       104 ~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~  164 (168)
T 2ell_A          104 GN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD  164 (168)
T ss_dssp             SS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred             CC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence            99 677765  678999999999999999998887    6899999999999995 5555554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.47  E-value=5.6e-13  Score=111.19  Aligned_cols=124  Identities=26%  Similarity=0.289  Sum_probs=96.4

Q ss_pred             cEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCC
Q 038551           15 NFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSL   93 (366)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~   93 (366)
                      ..+++.++++..+|.-. .++++.|++++|.++.+|.. ..+++|+.|++++|.+..+++..|..+++|++|++++| .+
T Consensus        13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred             CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-cc
Confidence            56788888888886422 36888888888888887755 77888888888888888887777888888888888888 45


Q ss_pred             CCcc-hhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEccccccc
Q 038551           94 ENLP-LGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRL  140 (366)
Q Consensus        94 ~~l~-~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~  140 (366)
                      +.++ ..+.++++|++|++++|.++.+|.. +..+++|+.|++++|+..
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            5544 4678888888888888888877764 778888888888885443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.47  E-value=5.4e-13  Score=109.63  Aligned_cols=127  Identities=22%  Similarity=0.302  Sum_probs=72.2

Q ss_pred             cEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcch-hhcCCCCCcEEEccccc
Q 038551           37 TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPL-GIFNLVSLQHLDISWTG  115 (366)
Q Consensus        37 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~  115 (366)
                      +.+++.++.++.+|.. ..++|+.|++++|.++.+++..+..+++|++|++++| .++.++. .+.++++|++|++++|.
T Consensus        10 ~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             TEEECCSSCCSSCCTT-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCCccCCCC-CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCC
Confidence            3444555555544432 2245566666666665555554555666666666666 4444443 34556666666666666


Q ss_pred             ccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccc
Q 038551          116 ITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV  166 (366)
Q Consensus       116 ~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  166 (366)
                      ++.+|.. +..+++|++|++++ +.+..++...+..+++|++|++.+|.+..
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           88 LQSLPNGVFDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccccCHHHhhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            6655543 45666666666666 34555555545566667777777666653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.46  E-value=4.7e-13  Score=111.59  Aligned_cols=133  Identities=23%  Similarity=0.230  Sum_probs=110.5

Q ss_pred             eccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC---CCCCCccEEEccCCCCccccchhhcCCCCCC
Q 038551            7 STINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI---PTCPRLRTLFLPSNHLGTVSNNFFHSMASLR   83 (366)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~---~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~   83 (366)
                      |.|..   +.+++.++++..+|... ..+++.|++++|.+..++..   ..+++|++|++++|.++.+++..|..+++|+
T Consensus         6 C~C~~---~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   81 (192)
T 1w8a_A            6 CHCEG---TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ   81 (192)
T ss_dssp             SEEET---TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             CEECC---CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence            55543   57899999999997522 35999999999999997752   7899999999999999988766699999999


Q ss_pred             EEEccCCCCCCCcc-hhhcCCCCCcEEEccccccccc-cccccCCCCCCEEEcccccccCccC
Q 038551           84 VLILSYNRSLENLP-LGIFNLVSLQHLDISWTGITTL-PIELKYLVNLKCLNLEYTFRLSRIP  144 (366)
Q Consensus        84 ~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~~~~~~~~  144 (366)
                      +|++++| .++.++ ..+.++++|++|++++|.++.+ |..+..+++|++|++++|......+
T Consensus        82 ~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           82 ELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             EEECCSC-CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             EEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            9999999 555554 5588999999999999999866 5678999999999999975554443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.46  E-value=6.4e-14  Score=139.97  Aligned_cols=110  Identities=27%  Similarity=0.260  Sum_probs=95.0

Q ss_pred             CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEE
Q 038551           53 PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCL  132 (366)
Q Consensus        53 ~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L  132 (366)
                      ..++.|+.|++++|.+..++.. +..+++|++|+|++| .++.+|..++++++|++|+|++|.++.+|..++.+++|++|
T Consensus       221 ~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L  298 (727)
T 4b8c_D          221 YDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF  298 (727)
T ss_dssp             -CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred             ccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence            6778899999999988888887 447899999999999 66788888889999999999999998888888999999999


Q ss_pred             EcccccccCccChhhhcCCcCCcEEEeecCCccc
Q 038551          133 NLEYTFRLSRIPQQVISDLKMLRALRMFECGFNV  166 (366)
Q Consensus       133 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  166 (366)
                      ++++ +.++.+|.. +.++++|+.|++.+|.+.+
T Consensus       299 ~L~~-N~l~~lp~~-~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          299 YFFD-NMVTTLPWE-FGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             ECCS-SCCCCCCSS-TTSCTTCCCEECTTSCCCS
T ss_pred             ECCC-CCCCccChh-hhcCCCccEEeCCCCccCC
Confidence            9998 466788887 8889999999999998876

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.45  E-value=1.3e-12  Score=107.41  Aligned_cols=129  Identities=24%  Similarity=0.339  Sum_probs=102.9

Q ss_pred             ccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCC
Q 038551           14 ENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR   91 (366)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~   91 (366)
                      ...+.+.++++..+|. .-.++|+.|++++|.++.++..  ..+++|++|++++|.++.+++.++..+++|++|++++| 
T Consensus         9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-   86 (177)
T ss_dssp             TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred             CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-
Confidence            3567788888888863 3347899999999998887654  67889999999999998888877888999999999999 


Q ss_pred             CCCCcch-hhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcccccccCccC
Q 038551           92 SLENLPL-GIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIP  144 (366)
Q Consensus        92 ~~~~l~~-~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~  144 (366)
                      .++.+|. .+..+++|++|++++|.++.+|.. +..+++|++|++++|+.....+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            5565554 467889999999999998888775 5788999999999865554443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.44  E-value=6.1e-13  Score=106.03  Aligned_cols=124  Identities=21%  Similarity=0.208  Sum_probs=106.3

Q ss_pred             CCccEEEecCCCcc--cCC-CCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEcc
Q 038551           12 EKENFLVLAGVGLT--EAP-SIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILS   88 (366)
Q Consensus        12 ~~~~~~~~~~~~~~--~~~-~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~   88 (366)
                      ...+.+++.++.+.  .+| .+..+++|+.|++++|.++.++....+++|++|++++|.+....+..+..+++|++|+++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls   96 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS   96 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence            56778899999998  665 468899999999999999998444899999999999999987444447789999999999


Q ss_pred             CCCCCCCcc--hhhcCCCCCcEEEccccccccccc----cccCCCCCCEEEccc
Q 038551           89 YNRSLENLP--LGIFNLVSLQHLDISWTGITTLPI----ELKYLVNLKCLNLEY  136 (366)
Q Consensus        89 ~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~l~~----~l~~l~~L~~L~l~~  136 (366)
                      +| .++.++  ..+..+++|++|++++|.++.++.    .+..+++|++|++++
T Consensus        97 ~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           97 GN-KIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TS-CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CC-cCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99 667654  778999999999999999998876    588999999998863

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.34  E-value=1.4e-12  Score=130.21  Aligned_cols=152  Identities=22%  Similarity=0.242  Sum_probs=99.5

Q ss_pred             CcccEEEcccCCccccCCC-CCCCCccEEE-----ccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCc
Q 038551           34 KETTRMSLMQNAIQNLTEI-PTCPRLRTLF-----LPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQ  107 (366)
Q Consensus        34 ~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~-----l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~  107 (366)
                      +.++.|++.++.+...+.. .....|..+.     +..|.+. +++..+..++.|++|++++| .+..+|..+.++++|+
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~  250 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLT  250 (727)
T ss_dssp             --------------------------------------------------CCCCCCEEECTTS-CCSCCCGGGGGCCSCS
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCC
Confidence            5688889988888775543 2333333333     3333333 34555889999999999999 6778998888999999


Q ss_pred             EEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhc
Q 038551          108 HLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLV  187 (366)
Q Consensus       108 ~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  187 (366)
                      +|+|++|.++.+|..+..+++|++|++++| .+..+|.. +.++++|++|++.+|.+.              .++..+..
T Consensus       251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~--------------~lp~~~~~  314 (727)
T 4b8c_D          251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAE-LGSCFQLKYFYFFDNMVT--------------TLPWEFGN  314 (727)
T ss_dssp             CCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSS-GGGGTTCSEEECCSSCCC--------------CCCSSTTS
T ss_pred             EEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChh-hcCCCCCCEEECCCCCCC--------------ccChhhhc
Confidence            999999999999999999999999999995 56688887 899999999999999986              45667899


Q ss_pred             Ccccceeeeccccchh
Q 038551          188 LKHLNLLTITLQSFGA  203 (366)
Q Consensus       188 l~~L~~L~l~~~~~~~  203 (366)
                      +++|+.|++++|.+.+
T Consensus       315 l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          315 LCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             CTTCCCEECTTSCCCS
T ss_pred             CCCccEEeCCCCccCC
Confidence            9999999999999875

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.31  E-value=7.8e-12  Score=121.30  Aligned_cols=147  Identities=18%  Similarity=0.177  Sum_probs=114.6

Q ss_pred             CCCCCcccEEE-cccCC-------------ccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCC
Q 038551           30 IGMWKETTRMS-LMQNA-------------IQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLEN   95 (366)
Q Consensus        30 ~~~~~~L~~L~-l~~~~-------------~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~   95 (366)
                      ++.+++|+.|+ ++.+.             +..++.    ..|+.|++++|.++.+|.  ++.+++|++|++++| .++.
T Consensus       405 l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~----~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~  477 (567)
T 1dce_A          405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY----ADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRA  477 (567)
T ss_dssp             HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHH----TTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCC
T ss_pred             HHHHHhcccCcchhhcccchhhhhhhhcccccccCc----cCceEEEecCCCCCCCcC--ccccccCcEeecCcc-cccc
Confidence            45566777777 44443             333322    258999999999998886  888999999999999 7779


Q ss_pred             cchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCcc--ChhhhcCCcCCcEEEeecCCcccccccccc
Q 038551           96 LPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRI--PQQVISDLKMLRALRMFECGFNVELEADSI  173 (366)
Q Consensus        96 l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  173 (366)
                      +|..++++++|++|++++|.++.+| .++.+++|++|++++| .+..+  |.. +..+++|+.|++.+|.+.+..     
T Consensus       478 lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~-----  549 (567)
T 1dce_A          478 LPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN-RLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEE-----  549 (567)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGG-GGGCTTCCEEECTTSGGGGSS-----
T ss_pred             cchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHH-HhcCCCCCEEEecCCcCCCCc-----
Confidence            9999999999999999999999998 7899999999999994 56665  665 889999999999999987521     


Q ss_pred             ccCCchhhhhhhhcCcccceeee
Q 038551          174 LFGDSEVLVEELLVLKHLNLLTI  196 (366)
Q Consensus       174 ~~~~~~~~~~~l~~l~~L~~L~l  196 (366)
                           .........+++|+.|++
T Consensus       550 -----~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          550 -----GIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             -----SCTTHHHHHCTTCSEEEC
T ss_pred             -----cHHHHHHHHCcccCccCC
Confidence                 112233345778887753

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.28  E-value=1.4e-11  Score=111.58  Aligned_cols=217  Identities=11%  Similarity=0.073  Sum_probs=118.6

Q ss_pred             CCcccEEEcccCCcc--------------------ccCCC--CC--------CCCccEEEccCCCCccccchhhcCCCCC
Q 038551           33 WKETTRMSLMQNAIQ--------------------NLTEI--PT--------CPRLRTLFLPSNHLGTVSNNFFHSMASL   82 (366)
Q Consensus        33 ~~~L~~L~l~~~~~~--------------------~l~~~--~~--------~~~L~~L~l~~~~~~~i~~~~~~~l~~L   82 (366)
                      +++|+.|++++|.+.                    .++..  ..        |++|+.+++.. .+..|++.+|..|++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            678999999998887                    22222  34        67777777777 6777777777777777


Q ss_pred             CEEEccCCCCCCCcc-hhhcCCCCCcEEEcccccc----ccccc-cccCCCCC--------------------------C
Q 038551           83 RVLILSYNRSLENLP-LGIFNLVSLQHLDISWTGI----TTLPI-ELKYLVNL--------------------------K  130 (366)
Q Consensus        83 ~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~----~~l~~-~l~~l~~L--------------------------~  130 (366)
                      +.+++..| .+..++ .+|.++.++.++.......    ..+.. .+..+..|                          .
T Consensus       127 ~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~  205 (329)
T 3sb4_A          127 KICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN  205 (329)
T ss_dssp             CEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred             ceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence            77777776 333333 3455555555555443211    01110 01112222                          2


Q ss_pred             EEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhh
Q 038551          131 CLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSY  210 (366)
Q Consensus       131 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~  210 (366)
                      .+.+.+ .........+...+++|+.+++.+|.+..             -....+..+.+|+.+++..| +..++.- .+
T Consensus       206 ~l~~~~-~l~~~~~~~l~~~~~~L~~l~L~~n~i~~-------------I~~~aF~~~~~L~~l~l~~n-i~~I~~~-aF  269 (329)
T 3sb4_A          206 FLTIEG-KLDNADFKLIRDYMPNLVSLDISKTNATT-------------IPDFTFAQKKYLLKIKLPHN-LKTIGQR-VF  269 (329)
T ss_dssp             EEEEEE-CCCHHHHHHHHHHCTTCCEEECTTBCCCE-------------ECTTTTTTCTTCCEEECCTT-CCEECTT-TT
T ss_pred             eEEEee-eecHHHHHHHHHhcCCCeEEECCCCCcce-------------ecHhhhhCCCCCCEEECCcc-cceehHH-Hh
Confidence            222221 00000000001136677777777776653             33445566777777777665 3333221 12


Q ss_pred             cccCcccce-eeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccccccccccCCCCCcceee
Q 038551          211 CRLGSISTQ-CLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVF  279 (366)
Q Consensus       211 ~~l~~l~l~-~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~  279 (366)
                      ..+.+  ++ .+.+..  .++..+-.+|.+|++|+.++++.+.++.++..++        ..+++|+.+.
T Consensus       270 ~~~~~--L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF--------~~~~~L~~ly  327 (329)
T 3sb4_A          270 SNCGR--LAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELF--------GNGVPSKLIY  327 (329)
T ss_dssp             TTCTT--CCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTT--------CTTCCCCEEE
T ss_pred             hCChh--ccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhhh--------cCCcchhhhc
Confidence            23332  33 344443  3333333458899999999999999999987665        5567777764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.27  E-value=1.3e-13  Score=115.47  Aligned_cols=118  Identities=18%  Similarity=0.213  Sum_probs=65.1

Q ss_pred             CccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhh
Q 038551           68 LGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQV  147 (366)
Q Consensus        68 ~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~  147 (366)
                      +..++.. +..+++|++|++++| .++.+| .+..+++|++|++++|.++.+|..+..+++|++|++++| .+..+| . 
T Consensus        37 l~~l~~~-~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~-  110 (198)
T 1ds9_A           37 IEKMDAT-LSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-G-  110 (198)
T ss_dssp             CCCCHHH-HHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-H-
T ss_pred             HhhhhHH-HhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-c-
Confidence            3344433 555666666666666 444455 455566666666666666666555555566666666663 444444 2 


Q ss_pred             hcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccchh
Q 038551          148 ISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGA  203 (366)
Q Consensus       148 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  203 (366)
                      +..+++|++|++.+|.+..            ......+..+++|+.|++++|.+..
T Consensus       111 ~~~l~~L~~L~l~~N~i~~------------~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          111 IEKLVNLRVLYMSNNKITN------------WGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HHHHHHSSEEEESEEECCC------------HHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             cccCCCCCEEECCCCcCCc------------hhHHHHHhcCCCCCEEEecCCcccc
Confidence            5555666666666666553            1112345556666666666665543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.27  E-value=3.6e-11  Score=98.41  Aligned_cols=99  Identities=19%  Similarity=0.297  Sum_probs=57.0

Q ss_pred             cEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchh-hcCCCCCcEEEccccc
Q 038551           37 TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLG-IFNLVSLQHLDISWTG  115 (366)
Q Consensus        37 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~  115 (366)
                      +.++++++.+..+|... .++|++|++++|.+..+++..|..+++|++|++++| .++.+|.. +.++++|++|++++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc
Confidence            34555555555554431 145666666666665555444666666666666666 44545433 3556666666666666


Q ss_pred             ccccccc-ccCCCCCCEEEcccc
Q 038551          116 ITTLPIE-LKYLVNLKCLNLEYT  137 (366)
Q Consensus       116 ~~~l~~~-l~~l~~L~~L~l~~~  137 (366)
                      ++.+|.. +..+++|++|++++|
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSS
T ss_pred             cceeCHHHhccccCCCEEEeCCC
Confidence            6666554 566666666666663

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.26  E-value=1.5e-11  Score=119.30  Aligned_cols=121  Identities=22%  Similarity=0.217  Sum_probs=103.1

Q ss_pred             cccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcccc
Q 038551           35 ETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWT  114 (366)
Q Consensus        35 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~  114 (366)
                      .|+.|++++|.++.+|....+++|+.|++++|.+..+|.. ++.+++|++|++++| .++.+| .++++++|++|++++|
T Consensus       442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN  518 (567)
T ss_dssp             TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred             CceEEEecCCCCCCCcCccccccCcEeecCcccccccchh-hhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence            5899999999999988778889999999999999999886 889999999999999 677788 7899999999999999


Q ss_pred             ccccc--cccccCCCCCCEEEcccccccCccChh---hhcCCcCCcEEEe
Q 038551          115 GITTL--PIELKYLVNLKCLNLEYTFRLSRIPQQ---VISDLKMLRALRM  159 (366)
Q Consensus       115 ~~~~l--~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l  159 (366)
                      .++.+  |..++.+++|+.|++++| .+...|..   .+..+++|+.|++
T Consensus       519 ~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          519 RLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence            99987  788999999999999995 45444432   2445888988863

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.23  E-value=6.6e-11  Score=96.81  Aligned_cols=102  Identities=24%  Similarity=0.327  Sum_probs=63.6

Q ss_pred             cEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCc-chhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEccc
Q 038551           59 RTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENL-PLGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEY  136 (366)
Q Consensus        59 ~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~  136 (366)
                      +.++++++.++.+|..+   .++|++|++++| .++.+ |..+.++++|++|++++|.++.+|.. +..+++|++|++++
T Consensus        15 ~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGI---PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCCccCCCc---CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            45666666666666552   256666777666 33333 44566666677777777666666654 46666677777766


Q ss_pred             ccccCccChhhhcCCcCCcEEEeecCCcc
Q 038551          137 TFRLSRIPQQVISDLKMLRALRMFECGFN  165 (366)
Q Consensus       137 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  165 (366)
                       +.+..++...+..+++|++|++.+|.+.
T Consensus        91 -N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 -NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             -SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             -CccceeCHHHhccccCCCEEEeCCCCcc
Confidence             4555555544666666777777666655

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.22  E-value=8.7e-11  Score=95.70  Aligned_cols=97  Identities=19%  Similarity=0.241  Sum_probs=39.3

Q ss_pred             EEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcch-hhcCCCCCcEEEcccccc
Q 038551           38 RMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPL-GIFNLVSLQHLDISWTGI  116 (366)
Q Consensus        38 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~  116 (366)
                      .++++++.++.+|... .++|++|++++|.+..+++..|..+++|++|++++| .++.+|. .+.++++|++|++++|.+
T Consensus        13 ~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~l   90 (170)
T 3g39_A           13 TVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQL   90 (170)
T ss_dssp             EEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCCcc
Confidence            3444444444433221 134444444444444443333444444444444444 2333332 223444444444444444


Q ss_pred             cccccc-ccCCCCCCEEEccc
Q 038551          117 TTLPIE-LKYLVNLKCLNLEY  136 (366)
Q Consensus       117 ~~l~~~-l~~l~~L~~L~l~~  136 (366)
                      +.+|.. +..+++|++|++++
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~  111 (170)
T 3g39_A           91 KSIPRGAFDNLKSLTHIWLLN  111 (170)
T ss_dssp             CCCCTTTTTTCTTCCEEECCS
T ss_pred             CEeCHHHhcCCCCCCEEEeCC
Confidence            433332 33444444444443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.21  E-value=9.5e-11  Score=95.49  Aligned_cols=109  Identities=23%  Similarity=0.220  Sum_probs=93.0

Q ss_pred             eccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCE
Q 038551            7 STINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRV   84 (366)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~   84 (366)
                      |.|.   .+.+++.++++..+|.-. .++++.|++++|.++.+++.  ..+++|++|++++|.+..+++.+|..+++|++
T Consensus         7 C~C~---~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~   82 (170)
T 3g39_A            7 CSCS---GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ   82 (170)
T ss_dssp             CEEE---TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCcC---CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence            5553   457899999999997533 48999999999999998554  88999999999999999999988899999999


Q ss_pred             EEccCCCCCCCcch-hhcCCCCCcEEEcccccccccc
Q 038551           85 LILSYNRSLENLPL-GIFNLVSLQHLDISWTGITTLP  120 (366)
Q Consensus        85 L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~l~  120 (366)
                      |++++| .++.+|. .+..+++|++|++++|.+...+
T Consensus        83 L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           83 LSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             EECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             EECCCC-ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            999999 6666665 5889999999999999887443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.21  E-value=3.3e-12  Score=106.94  Aligned_cols=127  Identities=22%  Similarity=0.293  Sum_probs=98.8

Q ss_pred             cccEEEcccC--CccccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEc
Q 038551           35 ETTRMSLMQN--AIQNLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDI  111 (366)
Q Consensus        35 ~L~~L~l~~~--~~~~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l  111 (366)
                      .++...+.+.  .++.++.. ..+++|++|++++|.+..++ . +..+++|++|++++| .++.+|..+..+++|++|++
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~-~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L  100 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-S-LSGMENLRILSLGRN-LIKKIENLDAVADTLEELWI  100 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-C-HHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEE
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-c-cccCCCCCEEECCCC-CcccccchhhcCCcCCEEEC
Confidence            4455555443  34444434 67889999999999888887 3 788999999999999 67788887777889999999


Q ss_pred             cccccccccccccCCCCCCEEEcccccccCccCh-hhhcCCcCCcEEEeecCCccc
Q 038551          112 SWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQ-QVISDLKMLRALRMFECGFNV  166 (366)
Q Consensus       112 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~  166 (366)
                      ++|.++.+| .+..+++|++|++++ +.+..++. ..+..+++|++|++.+|.+..
T Consensus       101 ~~N~l~~l~-~~~~l~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          101 SYNQIASLS-GIEKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             EEEECCCHH-HHHHHHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             cCCcCCcCC-ccccCCCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            999988877 578889999999998 45665543 337788999999999998764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.09  E-value=3.7e-10  Score=102.16  Aligned_cols=56  Identities=11%  Similarity=0.162  Sum_probs=47.3

Q ss_pred             CCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccC
Q 038551           33 WKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSY   89 (366)
Q Consensus        33 ~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~   89 (366)
                      |++|+.|++.+ .++.++..  ..|++|+.+++..|.+..+++.+|..+.++..+....
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~  157 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS  157 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence            89999999988 88888765  7899999999999999888888888888887776655

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.04  E-value=8.5e-09  Score=95.64  Aligned_cols=237  Identities=11%  Similarity=0.153  Sum_probs=115.3

Q ss_pred             CcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcEEE
Q 038551           34 KETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIFNLVSLQHLD  110 (366)
Q Consensus        34 ~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~  110 (366)
                      ..++.+.+.+ .++.++..  ..+ +|+.+.+..+ +..|+..+|..+ +|+.+.+..+  ++.++ .+|.++.+|+.++
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST--LEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT--CCEECSSTTTTCTTCCEEE
T ss_pred             CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC--ccEehHHHhhCcccCCeee
Confidence            4455555532 34444333  333 5666666544 555666556554 4666666543  33333 3456666666666


Q ss_pred             ccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcc
Q 038551          111 ISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKH  190 (366)
Q Consensus       111 l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  190 (366)
                      +..|.++.++...-...+|+.+.+..  .+..++...|.++++|+.+.+..+ +..             -....+.+ ..
T Consensus       187 l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~-l~~-------------I~~~aF~~-~~  249 (401)
T 4fdw_A          187 LSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN-VST-------------IGQEAFRE-SG  249 (401)
T ss_dssp             CTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT-CCE-------------ECTTTTTT-CC
T ss_pred             cCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC-ccC-------------cccccccc-CC
Confidence            66666666665433346666666653  255555555666666666666543 211             11111222 34


Q ss_pred             cceeeeccccchhhHhHhhhcccCcccceeeeccccCC----CCCcchhhhccCCcCcEEEeccCccceEeccccccccc
Q 038551          191 LNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNN----SNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRI  266 (366)
Q Consensus       191 L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~----~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~  266 (366)
                      |+.+.+.. ....++.- .+..+.+  |..+.+.....    .....-.+|.+|++|+.+.+. +.++.++..++     
T Consensus       250 L~~i~lp~-~i~~I~~~-aF~~c~~--L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF-----  319 (401)
T 4fdw_A          250 ITTVKLPN-GVTNIASR-AFYYCPE--LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLL-----  319 (401)
T ss_dssp             CSEEEEET-TCCEECTT-TTTTCTT--CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTT-----
T ss_pred             ccEEEeCC-CccEEChh-HhhCCCC--CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhh-----
Confidence            55555532 22222110 1122222  22233221110    011222346777888888877 34666665544     


Q ss_pred             cccCCCCCcceeeeecccceeEEeeccCccccccccccceEEeecCc
Q 038551          267 REICGFHSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLK  313 (366)
Q Consensus       267 ~~~~~~~~L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~  313 (366)
                         ..+.+|+.+.+. .+++.+.-    ..+... + |+.+.+.++.
T Consensus       320 ---~~c~~L~~l~lp-~~l~~I~~----~aF~~~-~-L~~l~l~~n~  356 (401)
T 4fdw_A          320 ---GGNRKVTQLTIP-ANVTQINF----SAFNNT-G-IKEVKVEGTT  356 (401)
T ss_dssp             ---TTCCSCCEEEEC-TTCCEECT----TSSSSS-C-CCEEEECCSS
T ss_pred             ---cCCCCccEEEEC-ccccEEcH----HhCCCC-C-CCEEEEcCCC
Confidence               456777777663 12222211    112223 3 7888877664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.03  E-value=1e-08  Score=95.11  Aligned_cols=215  Identities=13%  Similarity=0.187  Sum_probs=126.7

Q ss_pred             CCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCC
Q 038551           29 SIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSL  106 (366)
Q Consensus        29 ~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L  106 (366)
                      .+.++ +|+.+.+..+ ++.++..  .. .+|+.+.+.. .+..+...+|..|++|+.+++..| .++.++...-.+.+|
T Consensus       131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L  205 (401)
T 4fdw_A          131 AFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGI  205 (401)
T ss_dssp             TTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCC
T ss_pred             hcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeeccc
Confidence            45554 6888887655 6665544  33 3688887775 577777777888888888888777 566666443335777


Q ss_pred             cEEEcccccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhh
Q 038551          107 QHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEEL  185 (366)
Q Consensus       107 ~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l  185 (366)
                      +.+.+..+ ++.++.. +..+++|+.+++..  .+..++...|.+ .+|+.+.+.. .+..             .....+
T Consensus       206 ~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~-~i~~-------------I~~~aF  267 (401)
T 4fdw_A          206 EEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPN-GVTN-------------IASRAF  267 (401)
T ss_dssp             SEEECCTT-CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEET-TCCE-------------ECTTTT
T ss_pred             CEEEeCCc-hheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCC-CccE-------------EChhHh
Confidence            77777643 5555543 67777788777765  355666555655 5677777743 2322             223455


Q ss_pred             hcCcccceeeeccccch-----hhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccc
Q 038551          186 LVLKHLNLLTITLQSFG-----ALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDA  260 (366)
Q Consensus       186 ~~l~~L~~L~l~~~~~~-----~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~  260 (366)
                      ..+++|+.+.+..+...     .++. ..+..+.+  |..+.+..  .+....-.+|.+|++|+.+.+..+ ++.++..+
T Consensus       268 ~~c~~L~~l~l~~~~~~~~~~~~I~~-~aF~~c~~--L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~a  341 (401)
T 4fdw_A          268 YYCPELAEVTTYGSTFNDDPEAMIHP-YCLEGCPK--LARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSA  341 (401)
T ss_dssp             TTCTTCCEEEEESSCCCCCTTCEECT-TTTTTCTT--CCEECCCT--TCCEECTTTTTTCCSCCEEEECTT-CCEECTTS
T ss_pred             hCCCCCCEEEeCCccccCCcccEECH-HHhhCCcc--CCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHh
Confidence            56677777777654432     1111 01222222  33344432  233333344677777888877443 56665544


Q ss_pred             cccccccccCCCCCcceeeee
Q 038551          261 GELKRIREICGFHSLQKVFYK  281 (366)
Q Consensus       261 ~~~~~~~~~~~~~~L~~L~l~  281 (366)
                      +        ..+ +|+.+.+.
T Consensus       342 F--------~~~-~L~~l~l~  353 (401)
T 4fdw_A          342 F--------NNT-GIKEVKVE  353 (401)
T ss_dssp             S--------SSS-CCCEEEEC
T ss_pred             C--------CCC-CCCEEEEc
Confidence            4        334 67777665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.02  E-value=1.1e-09  Score=99.77  Aligned_cols=101  Identities=25%  Similarity=0.204  Sum_probs=79.1

Q ss_pred             EEEecCC-CcccCCCCCCCCcccEEEccc-CCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCC
Q 038551           16 FLVLAGV-GLTEAPSIGMWKETTRMSLMQ-NAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR   91 (366)
Q Consensus        16 ~~~~~~~-~~~~~~~~~~~~~L~~L~l~~-~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~   91 (366)
                      .+.+.++ ++..+|.+..+++|+.|++++ |.+..++..  ..+++|+.|++++|.+..+++..|..+++|++|+|++| 
T Consensus        12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-   90 (347)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-
T ss_pred             EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-
Confidence            4578777 888887788888899999986 888887753  78888888888888888887777888888888888888 


Q ss_pred             CCCCcchhhcCCCCCcEEEccccccc
Q 038551           92 SLENLPLGIFNLVSLQHLDISWTGIT  117 (366)
Q Consensus        92 ~~~~l~~~~~~l~~L~~L~l~~~~~~  117 (366)
                      .++.+|..+.....|++|++.+|.+.
T Consensus        91 ~l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 ALESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccceeCHHHcccCCceEEEeeCCCcc
Confidence            66666654333334888888888776

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.96  E-value=2.4e-10  Score=104.99  Aligned_cols=158  Identities=17%  Similarity=0.123  Sum_probs=79.4

Q ss_pred             CcccEEEcccCCcccc-----CCC--CCCCCccEEEccCCCCcccc-chhhcCCCCCCEEEccCCCCCCCcc-----hhh
Q 038551           34 KETTRMSLMQNAIQNL-----TEI--PTCPRLRTLFLPSNHLGTVS-NNFFHSMASLRVLILSYNRSLENLP-----LGI  100 (366)
Q Consensus        34 ~~L~~L~l~~~~~~~l-----~~~--~~~~~L~~L~l~~~~~~~i~-~~~~~~l~~L~~L~l~~~~~~~~l~-----~~~  100 (366)
                      +.|+.|++++|.+...     ...  ...++|+.|++++|.++... ..+...+++|+.|++++| .++...     ..+
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L  150 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLL  150 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHH
Confidence            3466666666666541     111  13356666666666664321 111233456666666666 333211     112


Q ss_pred             -cCCCCCcEEEcccccccc-----ccccccCCCCCCEEEcccccccCccC----hhhhcCCcCCcEEEeecCCccccccc
Q 038551          101 -FNLVSLQHLDISWTGITT-----LPIELKYLVNLKCLNLEYTFRLSRIP----QQVISDLKMLRALRMFECGFNVELEA  170 (366)
Q Consensus       101 -~~l~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~  170 (366)
                       ...++|++|++++|.++.     ++..+...++|++|++++|. ++...    ...+...++|++|++.+|.+++.   
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~---  226 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDT---  226 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH---
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH---
Confidence             234566666666666542     33344556666666666643 33211    11134455666666666666531   


Q ss_pred             cccccCCchhhhhhhhcCcccceeeeccccch
Q 038551          171 DSILFGDSEVLVEELLVLKHLNLLTITLQSFG  202 (366)
Q Consensus       171 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  202 (366)
                            ....+...+...+.|+.|++++|.+.
T Consensus       227 ------g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          227 ------AALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             ------HHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             ------HHHHHHHHHHhCCCCCEEeccCCCCC
Confidence                  01123344445566666666666554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.94  E-value=3.1e-09  Score=96.69  Aligned_cols=100  Identities=19%  Similarity=0.290  Sum_probs=67.5

Q ss_pred             EEEcccC-CccccCCCCCCCCccEEEccC-CCCccccchhhcCCCCCCEEEccCCCCCCCc-chhhcCCCCCcEEEcccc
Q 038551           38 RMSLMQN-AIQNLTEIPTCPRLRTLFLPS-NHLGTVSNNFFHSMASLRVLILSYNRSLENL-PLGIFNLVSLQHLDISWT  114 (366)
Q Consensus        38 ~L~l~~~-~~~~l~~~~~~~~L~~L~l~~-~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~  114 (366)
                      .++++++ .++.+|....+.+|+.|++++ |.+..+++..|..+++|++|+|++| .++.+ |..|.++++|++|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC
Confidence            4566666 677776655666777777775 7777777666777777777777777 44444 445677777777777777


Q ss_pred             ccccccccccCCCCCCEEEccccc
Q 038551          115 GITTLPIELKYLVNLKCLNLEYTF  138 (366)
Q Consensus       115 ~~~~l~~~l~~l~~L~~L~l~~~~  138 (366)
                      .++.+|..+.....|+.|++.+|.
T Consensus        91 ~l~~~~~~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           91 ALESLSWKTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             ccceeCHHHcccCCceEEEeeCCC
Confidence            777776653333337777777643

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.88  E-value=3.3e-10  Score=104.14  Aligned_cols=152  Identities=25%  Similarity=0.301  Sum_probs=111.2

Q ss_pred             CccEEEecCCCcccCC------CCC-CCCcccEEEcccCCccc--cCCC-CCCCCccEEEccCCCCccccchhh-----c
Q 038551           13 KENFLVLAGVGLTEAP------SIG-MWKETTRMSLMQNAIQN--LTEI-PTCPRLRTLFLPSNHLGTVSNNFF-----H   77 (366)
Q Consensus        13 ~~~~~~~~~~~~~~~~------~~~-~~~~L~~L~l~~~~~~~--l~~~-~~~~~L~~L~l~~~~~~~i~~~~~-----~   77 (366)
                      ..+.+++.++.+....      .+. ..++|+.|++++|.+..  +... ..+++|+.|++++|.++......+     .
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~  152 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH  152 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence            4556777777776531      122 23799999999999876  2222 456689999999999975433322     3


Q ss_pred             CCCCCCEEEccCCCCCCC-----cchhhcCCCCCcEEEcccccccc-----ccccccCCCCCCEEEcccccccCccChh-
Q 038551           78 SMASLRVLILSYNRSLEN-----LPLGIFNLVSLQHLDISWTGITT-----LPIELKYLVNLKCLNLEYTFRLSRIPQQ-  146 (366)
Q Consensus        78 ~l~~L~~L~l~~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~l~~~~~~~~~~~~-  146 (366)
                      ..++|++|++++| .++.     ++..+...++|++|++++|.++.     ++..+...++|++|++++| .++..... 
T Consensus       153 ~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~  230 (372)
T 3un9_A          153 DQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALA  230 (372)
T ss_dssp             TTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHH
T ss_pred             cCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHH
Confidence            5789999999999 5543     45556788999999999999873     4556778889999999996 44432221 


Q ss_pred             ---hhcCCcCCcEEEeecCCccc
Q 038551          147 ---VISDLKMLRALRMFECGFNV  166 (366)
Q Consensus       147 ---~~~~~~~L~~L~l~~~~~~~  166 (366)
                         .+...++|++|++++|.+.+
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCH
Confidence               14467899999999999986

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.54  E-value=3.1e-06  Score=78.21  Aligned_cols=103  Identities=13%  Similarity=0.209  Sum_probs=60.1

Q ss_pred             CCCCCC-cccEEEcccCCccccCCC--CCCCCccEEEccCC---CCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhc
Q 038551           29 SIGMWK-ETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSN---HLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIF  101 (366)
Q Consensus        29 ~~~~~~-~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~---~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~  101 (366)
                      .+.++. .|+.+.+.. .++.+...  ..|.+|+.+.+..+   .+..+...+|..|.+|+.+.+..+  ++.++ .++.
T Consensus        58 aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~  134 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFH  134 (394)
T ss_dssp             TTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTT
T ss_pred             hccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhh
Confidence            355553 477777753 36665544  67777887777654   355666666777777777666554  33333 3456


Q ss_pred             CCCCCcEEEccccccccccc-cccCCCCCCEEEcc
Q 038551          102 NLVSLQHLDISWTGITTLPI-ELKYLVNLKCLNLE  135 (366)
Q Consensus       102 ~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~  135 (366)
                      ++.+|+.+.+..+ +..++. .+..+.+|+.+.+.
T Consensus       135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~  168 (394)
T 4gt6_A          135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLP  168 (394)
T ss_dssp             TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECC
T ss_pred             hhcccccccccce-eeeecccceeccccccccccc
Confidence            6666776666432 223322 24555556665554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.49  E-value=5.2e-06  Score=76.72  Aligned_cols=126  Identities=12%  Similarity=0.228  Sum_probs=67.6

Q ss_pred             CCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhcCCCC
Q 038551           29 SIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIFNLVS  105 (366)
Q Consensus        29 ~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~  105 (366)
                      .+.+|.+|+.+.+. +.++.++..  ..|.+|+.+++..+ +..++..+|..+.+|+.+.+..+  +..+. .+|.++..
T Consensus        66 AF~~c~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~~~~  141 (394)
T 4fs7_A           66 AFQGCRKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM--LKSIGVEAFKGCDF  141 (394)
T ss_dssp             TTTTCTTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTCCC
T ss_pred             HhhCCCCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc--eeeecceeeecccc
Confidence            36666777777775 335555444  56677777776543 55666666666766666655443  22221 22333322


Q ss_pred             CcEEEcccccccccc-ccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecC
Q 038551          106 LQHLDISWTGITTLP-IELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFEC  162 (366)
Q Consensus       106 L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  162 (366)
                      +.....  ..+..+. ..+..+++|+.+.+..  .+..++...+.++.+|+.+.+..+
T Consensus       142 ~~~~~~--~~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~~  195 (394)
T 4fs7_A          142 KEITIP--EGVTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPRN  195 (394)
T ss_dssp             SEEECC--TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCTT
T ss_pred             cccccC--ccccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCCC
Confidence            221111  1122222 2356677777777764  344555555667777777766544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.40  E-value=2.5e-07  Score=84.35  Aligned_cols=178  Identities=15%  Similarity=0.096  Sum_probs=104.5

Q ss_pred             CCCCCccEEEccCCCCc----------cccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccccccccc-cc
Q 038551           53 PTCPRLRTLFLPSNHLG----------TVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTL-PI  121 (366)
Q Consensus        53 ~~~~~L~~L~l~~~~~~----------~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l-~~  121 (366)
                      ..+++|+.|.+.+....          .+. .++..+++|+.|+++++... .++. + .+++|++|++..+.+..- ..
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred             hhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence            45667777777544221          122 34677899999999887322 3343 3 378899999988876521 11


Q ss_pred             cc--cCCCCCCEEEcccc--cccC-----ccChhhh--cCCcCCcEEEeecCCccccccccccccCCchhhhhhh---hc
Q 038551          122 EL--KYLVNLKCLNLEYT--FRLS-----RIPQQVI--SDLKMLRALRMFECGFNVELEADSILFGDSEVLVEEL---LV  187 (366)
Q Consensus       122 ~l--~~l~~L~~L~l~~~--~~~~-----~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l---~~  187 (366)
                      .+  ..+++|++|++..+  +..+     .+... +  ..+++|+.|.+.+|.+.+             .....+   ..
T Consensus       212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~-l~~~~~p~Lr~L~L~~~~i~~-------------~~~~~la~a~~  277 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL-FSKDRFPNLKWLGIVDAEEQN-------------VVVEMFLESDI  277 (362)
T ss_dssp             HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG-SCTTTCTTCCEEEEESCTTHH-------------HHHHHHHHCSS
T ss_pred             HHHHccCCCCcEEEEeccccccccchhHHHHHHH-HhcCCCCCcCEEeCCCCCCch-------------HHHHHHHhCcc
Confidence            22  37889999988531  1111     11111 2  257899999999988874             222222   35


Q ss_pred             Ccccceeeeccccchh--hHhHhh-hcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCc
Q 038551          188 LKHLNLLTITLQSFGA--LQRLLS-YCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFND  252 (366)
Q Consensus       188 l~~L~~L~l~~~~~~~--~~~l~~-~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  252 (366)
                      +++|+.|+++.|.+..  ...+.. +.++++  +..|+++.+ .+++..+..+...- ...++++.+.
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~--L~~L~L~~n-~i~d~~~~~l~~al-g~~~~~~~~~  341 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKH--LKFINMKYN-YLSDEMKKELQKSL-PMKIDVSDSQ  341 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTT--CSEEECCSB-BCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCc--ceEEECCCC-cCCHHHHHHHHHHc-CCEEEecCCc
Confidence            7899999999887764  222221 233344  555777654 35555444444311 3567777765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.40  E-value=5.6e-06  Score=76.48  Aligned_cols=104  Identities=16%  Similarity=0.222  Sum_probs=62.8

Q ss_pred             CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcEEEccccccccccccccCCCCCCE
Q 038551           53 PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIFNLVSLQHLDISWTGITTLPIELKYLVNLKC  131 (366)
Q Consensus        53 ~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~  131 (366)
                      ..|.+|+.+.+..+ +..++..+|..+.+|+.+.+..+  ++.++ .++.++..|+.+.+..+.. .+........+|+.
T Consensus       159 ~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~-~i~~~~~~~~~l~~  234 (394)
T 4fs7_A          159 ATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLY-YLGDFALSKTGVKN  234 (394)
T ss_dssp             TTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCC-EECTTTTTTCCCCE
T ss_pred             cccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCce-EeehhhcccCCCce
Confidence            67778888887654 45667777888888888877665  33333 4466677777666654422 22223334456666


Q ss_pred             EEcccccccCccChhhhcCCcCCcEEEeecC
Q 038551          132 LNLEYTFRLSRIPQQVISDLKMLRALRMFEC  162 (366)
Q Consensus       132 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  162 (366)
                      +.+..  .+..+....+..+..++.+.+..+
T Consensus       235 i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~  263 (394)
T 4fs7_A          235 IIIPD--SFTELGKSVFYGCTDLESISIQNN  263 (394)
T ss_dssp             EEECT--TCCEECSSTTTTCSSCCEEEECCT
T ss_pred             EEECC--CceecccccccccccceeEEcCCC
Confidence            66653  334444444666677777766554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.37  E-value=2.4e-06  Score=77.81  Aligned_cols=167  Identities=17%  Similarity=0.125  Sum_probs=95.5

Q ss_pred             hcCCCCCCEEEccCCCC---------CCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChh
Q 038551           76 FHSMASLRVLILSYNRS---------LENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQ  146 (366)
Q Consensus        76 ~~~l~~L~~L~l~~~~~---------~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~  146 (366)
                      ...+++|+.|.+.....         ...+...+..+++|+.|.+.++.-..++. + .+++|++|++..|.........
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~  212 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVED  212 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHH
Confidence            45678888888865421         11244556778899999998873224444 3 3788999999875432222222


Q ss_pred             hhc--CCcCCcEEEeecC--CccccccccccccCCchhhhhhh--hcCcccceeeeccccchh--hHhHhhhcccCcccc
Q 038551          147 VIS--DLKMLRALRMFEC--GFNVELEADSILFGDSEVLVEEL--LVLKHLNLLTITLQSFGA--LQRLLSYCRLGSIST  218 (366)
Q Consensus       147 ~~~--~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~--~~~l~~~~~l~~l~l  218 (366)
                       +.  .+++|++|++..+  ...+.        .........+  ..+++|+.|++..+.+..  ...+...+.++.  +
T Consensus       213 -l~~~~lp~L~~L~L~~~~~~~~~~--------~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~--L  281 (362)
T 2ra8_A          213 -ILGSDLPNLEKLVLYVGVEDYGFD--------GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ--L  281 (362)
T ss_dssp             -HHHSBCTTCCEEEEECBCGGGTCC--------SCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGG--C
T ss_pred             -HHHccCCCCcEEEEeccccccccc--------hhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCC--C
Confidence             33  6889999988532  11110        0000111122  247889999998877653  223332233444  5


Q ss_pred             eeeeccccCCCCCcchh----hhccCCcCcEEEeccCccceE
Q 038551          219 QCLCLRHLNNSNSLSVF----AFASLRHLRTLQLYFNDLEEL  256 (366)
Q Consensus       219 ~~L~~~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~l~~l  256 (366)
                      +.|+++. +.+......    .+..+++|+.|+++.|.+++.
T Consensus       282 ~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          282 ETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             SEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred             CEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence            5566643 344443322    234568899999988876643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.34  E-value=1.5e-05  Score=73.55  Aligned_cols=80  Identities=11%  Similarity=0.212  Sum_probs=33.2

Q ss_pred             CCCCCcccEEEcccC---CccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhcCC
Q 038551           30 IGMWKETTRMSLMQN---AIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIFNL  103 (366)
Q Consensus        30 ~~~~~~L~~L~l~~~---~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l  103 (366)
                      +.+|.+|+.+.+..+   .++.+...  ..|.+|+.+.+..+ +..+...+|..+.+|+.+.+..+  ...++ ..+.++
T Consensus        83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c  159 (394)
T 4gt6_A           83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYC  159 (394)
T ss_dssp             TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTC
T ss_pred             hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce--eeeecccceecc
Confidence            444455555554433   23333322  34444444443332 33444444444555555554432  22222 223444


Q ss_pred             CCCcEEEcc
Q 038551          104 VSLQHLDIS  112 (366)
Q Consensus       104 ~~L~~L~l~  112 (366)
                      ..|+.+.+.
T Consensus       160 ~~L~~i~~~  168 (394)
T 4gt6_A          160 YSLHTVTLP  168 (394)
T ss_dssp             TTCCEEECC
T ss_pred             ccccccccc
Confidence            445444443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.29  E-value=8.9e-07  Score=72.78  Aligned_cols=46  Identities=13%  Similarity=0.026  Sum_probs=23.7

Q ss_pred             hcCCcCCcEEEe--ecCCccccccccccccCCchhhhhhhhcCcccceeeeccccch
Q 038551          148 ISDLKMLRALRM--FECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFG  202 (366)
Q Consensus       148 ~~~~~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  202 (366)
                      +...++|++|++  .+|.+...         +...+...+...+.|+.|++++|.+.
T Consensus       117 L~~n~~L~~L~L~~~~N~i~~~---------g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          117 LQSNTSLIELRIDNQSQPLGNN---------VEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHH---------HHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHhCCCceEEEecCCCCCCCHH---------HHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            334455666666  55555531         01123444455566666666666554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.28  E-value=1.1e-06  Score=70.99  Aligned_cols=40  Identities=20%  Similarity=0.159  Sum_probs=32.9

Q ss_pred             cceeeeccccCCCCCcchhhhccCCcCcEEEeccC-ccceE
Q 038551          217 STQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFN-DLEEL  256 (366)
Q Consensus       217 ~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~l  256 (366)
                      +++.|+++.|..+++..+..+..+++|++|++++| .+++.
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred             CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCch
Confidence            36668888888888888888888999999999998 77754

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.22  E-value=1.7e-06  Score=71.03  Aligned_cols=111  Identities=12%  Similarity=0.062  Sum_probs=77.0

Q ss_pred             CCCCCccEEEccCC-CCcc-----ccchhhcCCCCCCEEEccCCCCCCC-----cchhhcCCCCCcEEEccccccc----
Q 038551           53 PTCPRLRTLFLPSN-HLGT-----VSNNFFHSMASLRVLILSYNRSLEN-----LPLGIFNLVSLQHLDISWTGIT----  117 (366)
Q Consensus        53 ~~~~~L~~L~l~~~-~~~~-----i~~~~~~~l~~L~~L~l~~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~----  117 (366)
                      ...+.|++|++++| .++.     +.. .+...++|++|++++| .++.     +...+...+.|++|++++|.++    
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~-~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAE-ALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHH-HHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHH-HHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            56778888888887 7753     222 2566788888888888 4442     3444556678888888888886    


Q ss_pred             -cccccccCCCCCCEEEc--ccccccCccCh----hhhcCCcCCcEEEeecCCccc
Q 038551          118 -TLPIELKYLVNLKCLNL--EYTFRLSRIPQ----QVISDLKMLRALRMFECGFNV  166 (366)
Q Consensus       118 -~l~~~l~~l~~L~~L~l--~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~  166 (366)
                       .+...+...++|++|++  .+| .++....    ..+...++|++|++.+|.+..
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence             25556777888999999  664 4443221    124566889999999998764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.05  E-value=7e-06  Score=66.18  Aligned_cols=59  Identities=17%  Similarity=0.223  Sum_probs=26.9

Q ss_pred             CCcEEEccccccccc-cccccCCCCCCEEEcccccccCccChhhhcCC----cCCcEEEeecCC
Q 038551          105 SLQHLDISWTGITTL-PIELKYLVNLKCLNLEYTFRLSRIPQQVISDL----KMLRALRMFECG  163 (366)
Q Consensus       105 ~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~  163 (366)
                      +|++||+++|.++.. -..+..+++|++|++++|..+++.....+..+    ++|++|++++|.
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~  125 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG  125 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence            455555555544311 11234555555555555554444332223332    245555555553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.93  E-value=0.0014  Score=59.88  Aligned_cols=127  Identities=10%  Similarity=0.133  Sum_probs=77.6

Q ss_pred             CCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcch-hhcCC
Q 038551           27 APSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPL-GIFNL  103 (366)
Q Consensus        27 ~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l  103 (366)
                      .|.+....+|+.+.+. ..++.++..  ..|.+|+.+.+.. .+..|...+|..+ +|+.+.+..+  ++.++. +|.. 
T Consensus        39 ~~~~~~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~-  112 (379)
T 4h09_A           39 IPWYKDRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQG-  112 (379)
T ss_dssp             STTGGGGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTT-
T ss_pred             ccccccccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce--eeEeccceecc-
Confidence            3555666788888885 456666655  7788899888865 4777888878877 5777766554  444443 3433 


Q ss_pred             CCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecC
Q 038551          104 VSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFEC  162 (366)
Q Consensus       104 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  162 (366)
                      .+|+.+.+..+ ++.+....-.-.+|+.+.+..  .+..+....+..+..++.+.+...
T Consensus       113 ~~L~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~~  168 (379)
T 4h09_A          113 TDLDDFEFPGA-TTEIGNYIFYNSSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSSN  168 (379)
T ss_dssp             CCCSEEECCTT-CCEECTTTTTTCCCCEEEECT--TCCEECSCTTTTCTTCCEEEECTT
T ss_pred             CCcccccCCCc-cccccccccccceeeeeeccc--eeeccccchhcccccccccccccc
Confidence            47888877654 333333222223566665543  344444444666777777766544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.91  E-value=2.8e-06  Score=73.62  Aligned_cols=102  Identities=18%  Similarity=0.107  Sum_probs=65.8

Q ss_pred             CCCccE--EEccCCCCccccc---hhhcCCCCCCEEEccCCCCCCC---cchhhcCCCCCcEEEccccccccccccccCC
Q 038551           55 CPRLRT--LFLPSNHLGTVSN---NFFHSMASLRVLILSYNRSLEN---LPLGIFNLVSLQHLDISWTGITTLPIELKYL  126 (366)
Q Consensus        55 ~~~L~~--L~l~~~~~~~i~~---~~~~~l~~L~~L~l~~~~~~~~---l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l  126 (366)
                      .+.|..  ++++.|....++.   .+...+++|+.|+|++| .++.   +|..+..+++|++|+|++|.++.+.. +..+
T Consensus       140 dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~~l  217 (267)
T 3rw6_A          140 DPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDKI  217 (267)
T ss_dssp             CHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GGGG
T ss_pred             CcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCchh-hhhc
Confidence            344444  4555554333322   22356888999999998 4454   34556788899999999998886632 3333


Q ss_pred             C--CCCEEEcccccccCccCh------hhhcCCcCCcEEE
Q 038551          127 V--NLKCLNLEYTFRLSRIPQ------QVISDLKMLRALR  158 (366)
Q Consensus       127 ~--~L~~L~l~~~~~~~~~~~------~~~~~~~~L~~L~  158 (366)
                      .  +|++|++.+|+..+.+|.      .++..+++|+.|+
T Consensus       218 ~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          218 KGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             TTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             ccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            3  899999998765554441      2366788888775

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.75  E-value=3.2e-05  Score=66.95  Aligned_cols=112  Identities=19%  Similarity=0.097  Sum_probs=71.7

Q ss_pred             hcCCCCCCE--EEccCCCCCCCcchh----hcCCCCCcEEEcccccccccc---ccccCCCCCCEEEcccccccCccChh
Q 038551           76 FHSMASLRV--LILSYNRSLENLPLG----IFNLVSLQHLDISWTGITTLP---IELKYLVNLKCLNLEYTFRLSRIPQQ  146 (366)
Q Consensus        76 ~~~l~~L~~--L~l~~~~~~~~l~~~----~~~l~~L~~L~l~~~~~~~l~---~~l~~l~~L~~L~l~~~~~~~~~~~~  146 (366)
                      ++..+.|..  ++++.| ....++..    ..++++|+.|+|++|.++.++   ..+..+++|+.|++++ |.+..+.. 
T Consensus       137 l~~dp~L~~~~l~l~~N-~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~-  213 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLN-RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERE-  213 (267)
T ss_dssp             GGGCHHHHHTTCCCCTT-SHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGG-
T ss_pred             cCCCcchhhcCccccCC-HHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCchh-
Confidence            444444544  456666 33333332    246889999999999988654   4567899999999999 55665532 


Q ss_pred             hhcCCc--CCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeec
Q 038551          147 VISDLK--MLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTIT  197 (366)
Q Consensus       147 ~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  197 (366)
                       +..+.  +|++|.+.+|.+.+..  +    ....-....+..+++|+.|+-.
T Consensus       214 -l~~l~~l~L~~L~L~~Npl~~~~--~----~~~~y~~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          214 -LDKIKGLKLEELWLDGNSLCDTF--R----DQSTYISAIRERFPKLLRLDGH  259 (267)
T ss_dssp             -GGGGTTSCCSEEECTTSTTGGGC--S----SHHHHHHHHHHHCTTCCEESSC
T ss_pred             -hhhcccCCcceEEccCCcCcccc--C----cchhHHHHHHHHCcccCeECCc
Confidence             34343  8999999999987410  0    0001223456777888887754

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.47  E-value=0.0015  Score=59.69  Aligned_cols=104  Identities=16%  Similarity=0.221  Sum_probs=54.1

Q ss_pred             CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcEEEccccccccccc-cccCCCCCC
Q 038551           53 PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIFNLVSLQHLDISWTGITTLPI-ELKYLVNLK  130 (366)
Q Consensus        53 ~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~  130 (366)
                      ..+..|+.+.+..+ +..+...+|..+..|+.+.+..+  ++.+. .++.++.+|+.+.+.. .++.++. .+..+.+|+
T Consensus       214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~  289 (379)
T 4h09_A          214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLT  289 (379)
T ss_dssp             TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCC
T ss_pred             ccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhccccccc-cceeccccccccccccc
Confidence            44555555555432 44444444556666666666544  33332 3345555666665543 2334433 255566666


Q ss_pred             EEEcccccccCccChhhhcCCcCCcEEEeec
Q 038551          131 CLNLEYTFRLSRIPQQVISDLKMLRALRMFE  161 (366)
Q Consensus       131 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  161 (366)
                      .+.+.. +.+..++...|.++.+|+.+.+..
T Consensus       290 ~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~  319 (379)
T 4h09_A          290 KVVMDN-SAIETLEPRVFMDCVKLSSVTLPT  319 (379)
T ss_dssp             EEEECC-TTCCEECTTTTTTCTTCCEEECCT
T ss_pred             cccccc-cccceehhhhhcCCCCCCEEEcCc
Confidence            666654 345555554566666666666643

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.61  E-value=0.0036  Score=51.25  Aligned_cols=115  Identities=12%  Similarity=0.057  Sum_probs=55.8

Q ss_pred             CCCCCCEEEccCCCCCC-----CcchhhcCCCCCcEEEccccccc-----cccccccCCCCCCEEEcccccccCccChh-
Q 038551           78 SMASLRVLILSYNRSLE-----NLPLGIFNLVSLQHLDISWTGIT-----TLPIELKYLVNLKCLNLEYTFRLSRIPQQ-  146 (366)
Q Consensus        78 ~l~~L~~L~l~~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~-----~l~~~l~~l~~L~~L~l~~~~~~~~~~~~-  146 (366)
                      .-+.|+.|+|+++..++     .+..++..-..|+.|+|++|.+.     .+...+..-+.|++|+++.| .++.-... 
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~a  117 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLAR  117 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHHH
Confidence            34455555555531222     12333444455666666666554     23333444456666666663 33332211 


Q ss_pred             ---hhcCCcCCcEEEeecC---CccccccccccccCCchhhhhhhhcCcccceeeeccccch
Q 038551          147 ---VISDLKMLRALRMFEC---GFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFG  202 (366)
Q Consensus       147 ---~~~~~~~L~~L~l~~~---~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  202 (366)
                         .+..-+.|++|++.++   .+...         ....+.+.+..-+.|..|++..+...
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~---------g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQ---------VEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHH---------HHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHH---------HHHHHHHHHHhCCCcCeEeccCCCcc
Confidence               1334455777777543   23320         01234555666667777777655443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.22  E-value=0.0092  Score=45.41  Aligned_cols=34  Identities=24%  Similarity=0.373  Sum_probs=23.8

Q ss_pred             CccEEEccCCCCccccchhhcCCCCCCEEEccCC
Q 038551           57 RLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYN   90 (366)
Q Consensus        57 ~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~   90 (366)
                      +|+.|++++|.|+.++.++|..+++|+.|+|++|
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            4666677777776666666777777777777776

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.18  E-value=0.0094  Score=48.76  Aligned_cols=112  Identities=11%  Similarity=-0.002  Sum_probs=74.2

Q ss_pred             CCCCCccEEEccCC-CCccc----cchhhcCCCCCCEEEccCCCCCC-----CcchhhcCCCCCcEEEccccccc-----
Q 038551           53 PTCPRLRTLFLPSN-HLGTV----SNNFFHSMASLRVLILSYNRSLE-----NLPLGIFNLVSLQHLDISWTGIT-----  117 (366)
Q Consensus        53 ~~~~~L~~L~l~~~-~~~~i----~~~~~~~l~~L~~L~l~~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~-----  117 (366)
                      ..-+.|+.|+++++ .|+.-    -..++..-..|+.|+|++| .++     .+...+..-+.|++|+|++|.+.     
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            45677888888875 77531    1223556678999999888 554     34445555678999999999887     


Q ss_pred             cccccccCCCCCCEEEccccc--ccCccC----hhhhcCCcCCcEEEeecCCcc
Q 038551          118 TLPIELKYLVNLKCLNLEYTF--RLSRIP----QQVISDLKMLRALRMFECGFN  165 (366)
Q Consensus       118 ~l~~~l~~l~~L~~L~l~~~~--~~~~~~----~~~~~~~~~L~~L~l~~~~~~  165 (366)
                      .+...+..-+.|++|+++++.  .++.-.    ...+..-+.|++|++..+.+.
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            344456666789999998631  233211    112456678999998876654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.85  E-value=0.013  Score=44.65  Aligned_cols=59  Identities=25%  Similarity=0.242  Sum_probs=47.8

Q ss_pred             eccCcCCccEEEecCCCcc--cCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCc
Q 038551            7 STINKEKENFLVLAGVGLT--EAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLG   69 (366)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~   69 (366)
                      |.|.   ...+++.++++.  .+|.-. .++|+.|++++|.++.++..  ..+++|+.|++.+|.+.
T Consensus         6 C~C~---~~~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A            6 CSCA---GTLVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             CEEE---TTEEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEc---CCEEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5554   358899999998  887422 25799999999999999876  78899999999999773

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	366
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.7 bits (112), Expect = 1e-06
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 5/120 (4%)

Query: 17  LVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFF 76
           L L    ++    +      T + L +N +++++ I     L  L L  N++  +S    
Sbjct: 268 LKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--V 325

Query: 77  HSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEY 136
            S+  L+ L  + N+ + ++   + NL ++  L      I+ L   L  L  +  L L  
Sbjct: 326 SSLTKLQRLFFANNK-VSDVS-SLANLTNINWLSAGHNQISDL-TPLANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 4e-04
 Identities = 41/228 (17%), Positives = 87/228 (38%), Gaps = 21/228 (9%)

Query: 30  IGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSY 89
           +       R+ +  N + +++ +     L +L   +N +  ++     +  +L  L L+ 
Sbjct: 171 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNG 228

Query: 90  NRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVIS 149
           N+ L+++   + +L +L  LD++   I+ L   L  L  L  L L      +  P   ++
Sbjct: 229 NQ-LKDIG-TLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISPLAGLT 285

Query: 150 DLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTIT-LQSFGALQRL- 207
            L  L          +      ++            L L   N+  I+ + S   LQRL 
Sbjct: 286 ALTNLELNENQLEDISPISNLKNL----------TYLTLYFNNISDISPVSSLTKLQRLF 335

Query: 208 LSYCRLGSIST--QCLCLRHLN-NSNSLS-VFAFASLRHLRTLQLYFN 251
            +  ++  +S+      +  L+   N +S +   A+L  +  L L   
Sbjct: 336 FANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 8/76 (10%), Positives = 28/76 (36%), Gaps = 2/76 (2%)

Query: 15  NFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNN 74
            +L L    +++   +    +  R+    N + +++ +     +  L    N +  ++  
Sbjct: 310 TYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTP- 368

Query: 75  FFHSMASLRVLILSYN 90
              ++  +  L L+  
Sbjct: 369 -LANLTRITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.6 bits (109), Expect = 2e-06
 Identities = 30/179 (16%), Positives = 67/179 (37%), Gaps = 9/179 (5%)

Query: 47  QNLTEIPTC--PRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLV 104
             L ++P    P    L L +N +  + +  F ++ +L  LIL  N+  +  P     LV
Sbjct: 20  LGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 79

Query: 105 SLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGF 164
            L+ L +S   +  LP ++   +        +   ++++ + V + L  +  + +     
Sbjct: 80  KLERLYLSKNQLKELPEKMPKTLQELR---VHENEITKVRKSVFNGLNQMIVVELGTNPL 136

Query: 165 NVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRL-LSYCRLGSISTQCLC 222
                 +    G  ++     + +   N+ TI      +L  L L   ++  +    L 
Sbjct: 137 KSSGIENGAFQGMKKL---SYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLK 192

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 8/99 (8%)

Query: 32  MWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR 91
                    L  ++ +  +     P L  L + +N L  +          L  LI S+N 
Sbjct: 260 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNH 315

Query: 92  SLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLK 130
            L  +P    NL   + L + +  +   P   + + +L+
Sbjct: 316 -LAEVPELPQNL---KQLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 9/124 (7%)

Query: 32  MWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR 91
           +         +     +         L       N       +      SL  L +S N+
Sbjct: 236 LTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK 295

Query: 92  SLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDL 151
            L  LP     L   + L  S+  +  +P   +   NLK L++EY   L   P  +   +
Sbjct: 296 -LIELPALPPRL---ERLIASFNHLAEVPELPQ---NLKQLHVEYN-PLREFP-DIPESV 346

Query: 152 KMLR 155
           + LR
Sbjct: 347 EDLR 350

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 15/72 (20%), Positives = 22/72 (30%)

Query: 73  NNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCL 132
                   +L  L L  NR    LP G+  L  L  L++S+  +     +   L      
Sbjct: 237 LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS 296

Query: 133 NLEYTFRLSRIP 144
                  L   P
Sbjct: 297 AYANNKCLCGSP 308

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	366
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.86
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.81
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.8
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.79
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.78
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.78
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.77
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.76
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.74
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.66
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.61
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.6
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.58
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.52
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.49
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.49
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.47
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.47
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.47
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.21
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.19
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.16
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.13
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.12
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.11
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.98
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.93
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.92
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.71
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.49
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.37
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.2
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.88

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.86  E-value=1.9e-20  Score=171.21  Aligned_cols=269  Identities=18%  Similarity=0.282  Sum_probs=153.9

Q ss_pred             CccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCC
Q 038551           13 KENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRS   92 (366)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~   92 (366)
                      +.+.+.+.++++.+++.++.+++|++|++++|.++++++...+++|++|++++|.+..+++  +..+++|+.|+++++ .
T Consensus        45 ~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i~~--l~~l~~L~~L~~~~~-~  121 (384)
T d2omza2          45 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-Q  121 (384)
T ss_dssp             TCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-C
T ss_pred             CCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCCccccCCcccccccccccccccccc--ccccccccccccccc-c
Confidence            5667788888888888888899999999999999988777889999999999999888775  778999999998877 3


Q ss_pred             CCCcch----------------------------------------------------------------hhcCCCCCcE
Q 038551           93 LENLPL----------------------------------------------------------------GIFNLVSLQH  108 (366)
Q Consensus        93 ~~~l~~----------------------------------------------------------------~~~~l~~L~~  108 (366)
                      .+.++.                                                                .+..+++++.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  201 (384)
T d2omza2         122 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES  201 (384)
T ss_dssp             CCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccce
Confidence            332211                                                                1222344445


Q ss_pred             EEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcC
Q 038551          109 LDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVL  188 (366)
Q Consensus       109 L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  188 (366)
                      ++++++.++.++. ...+++|++|++++ +.+..++.  +..+++|+.+++.+|.+.+               ...+..+
T Consensus       202 l~l~~n~i~~~~~-~~~~~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~l~~n~l~~---------------~~~~~~~  262 (384)
T d2omza2         202 LIATNNQISDITP-LGILTNLDELSLNG-NQLKDIGT--LASLTNLTDLDLANNQISN---------------LAPLSGL  262 (384)
T ss_dssp             EECCSSCCCCCGG-GGGCTTCCEEECCS-SCCCCCGG--GGGCTTCSEEECCSSCCCC---------------CGGGTTC
T ss_pred             eeccCCccCCCCc-ccccCCCCEEECCC-CCCCCcch--hhcccccchhccccCccCC---------------CCccccc
Confidence            5555544444332 23444555555555 23333332  4455555555555555443               1124445


Q ss_pred             cccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccccccccc
Q 038551          189 KHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIRE  268 (366)
Q Consensus       189 ~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~  268 (366)
                      ++|+.++++++....++.+.....+.     .+..+.+.-..   +..+..+++++.|++++|+++.++.          
T Consensus       263 ~~L~~L~l~~~~l~~~~~~~~~~~l~-----~l~~~~n~l~~---~~~~~~~~~l~~L~ls~n~l~~l~~----------  324 (384)
T d2omza2         263 TKLTELKLGANQISNISPLAGLTALT-----NLELNENQLED---ISPISNLKNLTYLTLYFNNISDISP----------  324 (384)
T ss_dssp             TTCSEEECCSSCCCCCGGGTTCTTCS-----EEECCSSCCSC---CGGGGGCTTCSEEECCSSCCSCCGG----------
T ss_pred             ccCCEeeccCcccCCCCccccccccc-----ccccccccccc---ccccchhcccCeEECCCCCCCCCcc----------
Confidence            55666666555555444333222221     22222221111   1125556666666666666654421          


Q ss_pred             cCCCCCcceeeeecccceeEEeeccCccccccccccceEEeecCc------ccCCcccccccCCCC
Q 038551          269 ICGFHSLQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLK------RLECAELKELPLDCN  328 (366)
Q Consensus       269 ~~~~~~L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~------~~~~~~L~~L~l~~n  328 (366)
                      ...+++|+.|+++-..++      +.+.+..+|+ |++|++++|+      +.++++|+.|++++|
T Consensus       325 l~~l~~L~~L~L~~n~l~------~l~~l~~l~~-L~~L~l~~N~l~~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         325 VSSLTKLQRLFFANNKVS------DVSSLANLTN-INWLSAGHNQISDLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGGCTTCCEEECCSSCCC------CCGGGGGCTT-CCEEECCSSCCCBCGGGTTCTTCSEEECCCE
T ss_pred             cccCCCCCEEECCCCCCC------CChhHcCCCC-CCEEECCCCcCCCChhhccCCCCCEeeCCCC
Confidence            034566666655411111      1112333555 6777766666      455666666666654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=8.3e-19  Score=160.17  Aligned_cols=270  Identities=17%  Similarity=0.178  Sum_probs=172.5

Q ss_pred             CCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhc
Q 038551           22 VGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIF  101 (366)
Q Consensus        22 ~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~  101 (366)
                      .++.+......+.+|+.|+++++.++.+.....+++|++|++++|.++.+++  ++.+++|++|++++| .+..+++ +.
T Consensus        32 ~~~~~~~~~~~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n-~i~~i~~-l~  107 (384)
T d2omza2          32 TNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADITP-LA  107 (384)
T ss_dssp             SSTTSEECHHHHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GT
T ss_pred             CCCCCccCHHHhCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCCcc--ccCCccccccccccc-ccccccc-cc
Confidence            3344433344567899999999999988655789999999999999999886  889999999999999 6666665 78


Q ss_pred             CCCCCcEEEccccccccccccccCCCCCCEEEcccccc-----------------------------------------c
Q 038551          102 NLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFR-----------------------------------------L  140 (366)
Q Consensus       102 ~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~-----------------------------------------~  140 (366)
                      ++++|++|++.++.++.++.. .....+.......+..                                         .
T Consensus       108 ~l~~L~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (384)
T d2omza2         108 NLTNLTGLTLFNNQITDIDPL-KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK  186 (384)
T ss_dssp             TCTTCCEEECCSSCCCCCGGG-TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC
T ss_pred             ccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccc
Confidence            999999999998877644321 1222222222211100                                         0


Q ss_pred             CccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCccccee
Q 038551          141 SRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQC  220 (366)
Q Consensus       141 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~  220 (366)
                      ..... ....+++++.+.+.+|.+..             .  .....+++|+.|++++|.+..++.+..+.+     +..
T Consensus       187 ~~~~~-~~~~l~~~~~l~l~~n~i~~-------------~--~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~-----L~~  245 (384)
T d2omza2         187 VSDIS-VLAKLTNLESLIATNNQISD-------------I--TPLGILTNLDELSLNGNQLKDIGTLASLTN-----LTD  245 (384)
T ss_dssp             CCCCG-GGGGCTTCSEEECCSSCCCC-------------C--GGGGGCTTCCEEECCSSCCCCCGGGGGCTT-----CSE
T ss_pred             ccccc-ccccccccceeeccCCccCC-------------C--CcccccCCCCEEECCCCCCCCcchhhcccc-----cch
Confidence            00111 14566777788887777664             1  123456677777887777766655443333     333


Q ss_pred             eeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccccccccccCCCCCcceeeee------------cccceeE
Q 038551          221 LCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYK------------ILKIEAR  288 (366)
Q Consensus       221 L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~------------l~~l~~L  288 (366)
                      +++..+.- +..  ..+..+++|++|+++++.+..++.-          ..++.++.+...            +..++.+
T Consensus       246 L~l~~n~l-~~~--~~~~~~~~L~~L~l~~~~l~~~~~~----------~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L  312 (384)
T d2omza2         246 LDLANNQI-SNL--APLSGLTKLTELKLGANQISNISPL----------AGLTALTNLELNENQLEDISPISNLKNLTYL  312 (384)
T ss_dssp             EECCSSCC-CCC--GGGTTCTTCSEEECCSSCCCCCGGG----------TTCTTCSEEECCSSCCSCCGGGGGCTTCSEE
T ss_pred             hccccCcc-CCC--CcccccccCCEeeccCcccCCCCcc----------ccccccccccccccccccccccchhcccCeE
Confidence            55544332 211  1266677788888777766544321          223333333333            2223444


Q ss_pred             EeeccC-----ccccccccccceEEeecCc------ccCCcccccccCCCCCCCC
Q 038551          289 DMACTC-----SQYQACPRGLTKFEEHPLK------RLECAELKELPLDCNHGLE  332 (366)
Q Consensus       289 ~l~~~c-----~~l~~~~~~L~~L~l~~~~------~~~~~~L~~L~l~~n~~~~  332 (366)
                      +++ ++     ..+..+|+ |++|++++|+      +..|++|+.|++++|++.+
T Consensus       313 ~ls-~n~l~~l~~l~~l~~-L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         313 TLY-FNNISDISPVSSLTK-LQRLFFANNKVSDVSSLANLTNINWLSAGHNQISD  365 (384)
T ss_dssp             ECC-SSCCSCCGGGGGCTT-CCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCB
T ss_pred             ECC-CCCCCCCcccccCCC-CCEEECCCCCCCCChhHcCCCCCCEEECCCCcCCC
Confidence            444 33     22344788 9999999988      7788999999999998853

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=8.1e-19  Score=153.96  Aligned_cols=230  Identities=25%  Similarity=0.268  Sum_probs=180.3

Q ss_pred             eeccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCC
Q 038551            6 ASTINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLR   83 (366)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~   83 (366)
                      +|.|..+.+..+.+.+.++..+|.-- .+.++.|++++|.++.++..  ..+++|++|++++|.+..++...+..+..++
T Consensus         5 ~C~C~~~~~~~v~c~~~~L~~iP~~i-p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~   83 (284)
T d1ozna_           5 ACVCYNEPKVTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE   83 (284)
T ss_dssp             TCEEECSSSCEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CCEEcCCCCeEEEcCCCCCCccCCCC-CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccc
Confidence            48888888888999999999997522 26789999999999998865  8899999999999999998888888899999


Q ss_pred             EEEccCCCCCCCc-chhhcCCCCCcEEEccccccccccc-cccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeec
Q 038551           84 VLILSYNRSLENL-PLGIFNLVSLQHLDISWTGITTLPI-ELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFE  161 (366)
Q Consensus        84 ~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  161 (366)
                      .+....+..++.+ +..+.++++|++|++++|.+..++. .+....+|+.+++.+ +.++.++...+..+++|++|++.+
T Consensus        84 ~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~-N~l~~i~~~~f~~~~~L~~L~l~~  162 (284)
T d1ozna_          84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHG  162 (284)
T ss_dssp             EEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             ccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcc-ccccccChhHhccccchhhccccc
Confidence            9987765466666 5568899999999999999887655 477889999999999 677788776688999999999999


Q ss_pred             CCccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCC
Q 038551          162 CGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLR  241 (366)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~  241 (366)
                      |.+..             .....+..+++|+.+.+.+|.+..+.. ..+..+.+  +..|++.... +.......+..++
T Consensus       163 N~l~~-------------l~~~~f~~l~~L~~l~l~~N~l~~i~~-~~f~~l~~--L~~L~l~~N~-i~~~~~~~~~~~~  225 (284)
T d1ozna_         163 NRISS-------------VPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGR--LMTLYLFANN-LSALPTEALAPLR  225 (284)
T ss_dssp             SCCCE-------------ECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTT--CCEEECCSSC-CSCCCHHHHTTCT
T ss_pred             Ccccc-------------cchhhhccccccchhhhhhccccccCh-hHhhhhhh--cccccccccc-ccccccccccccc
Confidence            99875             445677889999999999998876532 11334444  3335554432 2223324477788


Q ss_pred             cCcEEEeccCccc
Q 038551          242 HLRTLQLYFNDLE  254 (366)
Q Consensus       242 ~L~~L~l~~~~l~  254 (366)
                      +|++|++++|.+.
T Consensus       226 ~L~~L~l~~N~l~  238 (284)
T d1ozna_         226 ALQYLRLNDNPWV  238 (284)
T ss_dssp             TCCEEECCSSCEE
T ss_pred             ccCEEEecCCCCC
Confidence            8888888887665

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=9.5e-19  Score=151.99  Aligned_cols=181  Identities=25%  Similarity=0.271  Sum_probs=146.8

Q ss_pred             eeccCcC-CccEEEecCCCcccCCC-CCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCC
Q 038551            6 ASTINKE-KENFLVLAGVGLTEAPS-IGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMAS   81 (366)
Q Consensus         6 ~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~   81 (366)
                      .|+|... ...-++|.++++..+|. +.  ++++.|++++|.++.++..  ..+++|++|++++|.++.++.  +..+++
T Consensus         3 ~C~~~~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~--~~~l~~   78 (266)
T d1p9ag_           3 ICEVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPV   78 (266)
T ss_dssp             SSEEECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTT
T ss_pred             ccEEcccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc--cccccc
Confidence            3666553 33347899999999864 42  5799999999999987754  789999999999999988876  567999


Q ss_pred             CCEEEccCCCCCCCcchhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEee
Q 038551           82 LRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMF  160 (366)
Q Consensus        82 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  160 (366)
                      |++|++++| .++..+..+.++++|++|+++++.+..++.. +..+.++++|++.+ +.+..++...+..+++++.+++.
T Consensus        79 L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~-n~l~~l~~~~~~~l~~l~~l~l~  156 (266)
T d1p9ag_          79 LGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLA  156 (266)
T ss_dssp             CCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECT
T ss_pred             ccccccccc-cccccccccccccccccccccccccceeeccccccccccccccccc-cccceeccccccccccchhcccc
Confidence            999999999 6777787788899999999999988876654 67889999999998 57777777767788999999999


Q ss_pred             cCCccccccccccccCCchhhhhhhhcCcccceeeeccccchhhH
Q 038551          161 ECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQ  205 (366)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  205 (366)
                      +|+++.             .....+..+++|+.|++++|.+..++
T Consensus       157 ~N~l~~-------------~~~~~~~~l~~L~~L~Ls~N~L~~lp  188 (266)
T d1p9ag_         157 NNNLTE-------------LPAGLLNGLENLDTLLLQENSLYTIP  188 (266)
T ss_dssp             TSCCSC-------------CCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             cccccc-------------cCccccccccccceeecccCCCcccC
Confidence            999875             44566778889999999888776553

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=6.4e-18  Score=149.66  Aligned_cols=239  Identities=21%  Similarity=0.240  Sum_probs=163.2

Q ss_pred             eccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCE
Q 038551            7 STINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRV   84 (366)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~   84 (366)
                      |+|   ....++|.+.++..+|.- -.+++++|++++|.++.++..  ..+++|++|++++|.+..+++..|..+++|++
T Consensus         8 c~c---~~~~~~C~~~~L~~lP~~-l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~   83 (305)
T d1xkua_           8 CQC---HLRVVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER   83 (305)
T ss_dssp             CEE---ETTEEECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred             CEe---cCCEEEecCCCCCccCCC-CCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCE
Confidence            555   455679999999998752 137899999999999998764  78899999999999998887777889999999


Q ss_pred             EEccCCCCCCCcchhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcccccccC-ccChhhhcCCcCCcEEEeecC
Q 038551           85 LILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLS-RIPQQVISDLKMLRALRMFEC  162 (366)
Q Consensus        85 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~  162 (366)
                      |++++| .++.+|..+  ...++.|++.++.+..++.. +.....++.++...+.... ......+..+++|+.+.+.+|
T Consensus        84 L~l~~n-~l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n  160 (305)
T d1xkua_          84 LYLSKN-QLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT  160 (305)
T ss_dssp             EECCSS-CCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred             ecccCC-ccCcCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccC
Confidence            999999 677777543  46788899988888877654 5667777888877642221 122223667888888888888


Q ss_pred             CccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCc
Q 038551          163 GFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRH  242 (366)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~  242 (366)
                      .+..              .+..  ..++|+.|++.+|....... ..+..+..  +..|+++.+ .+.......+.++++
T Consensus       161 ~l~~--------------l~~~--~~~~L~~L~l~~n~~~~~~~-~~~~~~~~--l~~L~~s~n-~l~~~~~~~~~~l~~  220 (305)
T d1xkua_         161 NITT--------------IPQG--LPPSLTELHLDGNKITKVDA-ASLKGLNN--LAKLGLSFN-SISAVDNGSLANTPH  220 (305)
T ss_dssp             CCCS--------------CCSS--CCTTCSEEECTTSCCCEECT-GGGTTCTT--CCEEECCSS-CCCEECTTTGGGSTT
T ss_pred             Cccc--------------cCcc--cCCccCEEECCCCcCCCCCh-hHhhcccc--ccccccccc-ccccccccccccccc
Confidence            7763              1111  24678888888776654322 11233333  334544432 222222234677888


Q ss_pred             CcEEEeccCccceEeccccccccccccCCCCCcceeeee
Q 038551          243 LRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYK  281 (366)
Q Consensus       243 L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~  281 (366)
                      |++|++++|.++.++...         ..+++|+.|+++
T Consensus       221 L~~L~L~~N~L~~lp~~l---------~~l~~L~~L~Ls  250 (305)
T d1xkua_         221 LRELHLNNNKLVKVPGGL---------ADHKYIQVVYLH  250 (305)
T ss_dssp             CCEEECCSSCCSSCCTTT---------TTCSSCCEEECC
T ss_pred             ceeeeccccccccccccc---------ccccCCCEEECC
Confidence            888888888877765322         446666666664

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=1e-17  Score=148.27  Aligned_cols=260  Identities=16%  Similarity=0.147  Sum_probs=190.9

Q ss_pred             cccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcccc
Q 038551           35 ETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWT  114 (366)
Q Consensus        35 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~  114 (366)
                      ..+.++.++..++.+|.. -.+++++|++++|.++.+++..|..+++|++|++++|...+..|..|.++++|++|++++|
T Consensus        11 ~~~~~~C~~~~L~~lP~~-l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             ETTEEECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             cCCEEEecCCCCCccCCC-CCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            567889888899998874 2368999999999999999877999999999999999444444667999999999999999


Q ss_pred             ccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCccccee
Q 038551          115 GITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLL  194 (366)
Q Consensus       115 ~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  194 (366)
                      +++.+|..  ....++.|++.. +.+..++...+.....+..+.+..+....           .......+..+++|+.+
T Consensus        90 ~l~~l~~~--~~~~l~~L~~~~-n~l~~l~~~~~~~~~~~~~l~~~~n~~~~-----------~~~~~~~~~~l~~L~~l  155 (305)
T d1xkua_          90 QLKELPEK--MPKTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKS-----------SGIENGAFQGMKKLSYI  155 (305)
T ss_dssp             CCSBCCSS--CCTTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCG-----------GGBCTTGGGGCTTCCEE
T ss_pred             ccCcCccc--hhhhhhhhhccc-cchhhhhhhhhhccccccccccccccccc-----------cCCCccccccccccCcc
Confidence            99999864  446899999998 57777777667778888889888876543           12445567778999999


Q ss_pred             eeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccccccccccCCCCC
Q 038551          195 TITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHS  274 (366)
Q Consensus       195 ~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~  274 (366)
                      +++.+.+..++... ..     ++..|++..... .......+.+++.+++|++++|.+..++....        ..+++
T Consensus       156 ~l~~n~l~~l~~~~-~~-----~L~~L~l~~n~~-~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~--------~~l~~  220 (305)
T d1xkua_         156 RIADTNITTIPQGL-PP-----SLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSL--------ANTPH  220 (305)
T ss_dssp             ECCSSCCCSCCSSC-CT-----TCSEEECTTSCC-CEECTGGGTTCTTCCEEECCSSCCCEECTTTG--------GGSTT
T ss_pred             ccccCCccccCccc-CC-----ccCEEECCCCcC-CCCChhHhhccccccccccccccccccccccc--------ccccc
Confidence            99998877654321 22     355566655433 22222457888999999999999998865443        55788


Q ss_pred             cceeeeecccceeEEeeccCccccccccccceEEeecCcc--------------cCCcccccccCCCCCC
Q 038551          275 LQKVFYKILKIEARDMACTCSQYQACPRGLTKFEEHPLKR--------------LECAELKELPLDCNHG  330 (366)
Q Consensus       275 L~~L~l~l~~l~~L~l~~~c~~l~~~~~~L~~L~l~~~~~--------------~~~~~L~~L~l~~n~~  330 (366)
                      |+.|+++-..++.+  .   ..+..+|+ |++|++++|++              ...+.|+.|++++|++
T Consensus       221 L~~L~L~~N~L~~l--p---~~l~~l~~-L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         221 LRELHLNNNKLVKV--P---GGLADHKY-IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             CCEEECCSSCCSSC--C---TTTTTCSS-CCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             ceeeeccccccccc--c---cccccccC-CCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            88887752222111  1   12344677 99999988872              2346677788887775

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.77  E-value=8.5e-19  Score=156.01  Aligned_cols=130  Identities=17%  Similarity=0.268  Sum_probs=70.7

Q ss_pred             cccEEEcccCCccc---cCCC-CCCCCccEEEccC-CCCc-cccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcE
Q 038551           35 ETTRMSLMQNAIQN---LTEI-PTCPRLRTLFLPS-NHLG-TVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQH  108 (366)
Q Consensus        35 ~L~~L~l~~~~~~~---l~~~-~~~~~L~~L~l~~-~~~~-~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~  108 (366)
                      +++.|+++++.+..   +|.. ..+++|++|++++ |.+. .+|+. ++++++|++|++++|+..+..+..+..+.+|++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc-cccccccchhhhccccccccccccccchhhhcc
Confidence            45666666655553   3333 5566666666654 4443 45555 555666666666666333334444555666666


Q ss_pred             EEccccccc-cccccccCCCCCCEEEcccccccCccChhhhcCCcCC-cEEEeecCCccc
Q 038551          109 LDISWTGIT-TLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKML-RALRMFECGFNV  166 (366)
Q Consensus       109 L~l~~~~~~-~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L-~~L~l~~~~~~~  166 (366)
                      +++++|.+. .+|..+..++.|+++++++|...+.+|.. +..+..+ +.+.+.+|.+.+
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~l~~  188 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTG  188 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEE
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccc-cccccccccccccccccccc
Confidence            666665443 45555666666666666664444455544 4444443 555555555543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5.9e-18  Score=146.90  Aligned_cols=182  Identities=21%  Similarity=0.197  Sum_probs=142.2

Q ss_pred             CCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcc
Q 038551           33 WKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDIS  112 (366)
Q Consensus        33 ~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~  112 (366)
                      ...+..++.+++.++.+|.. -.+++++|++++|.|+.++++.|..+++|++|++++| .++.++. +..+++|++|+++
T Consensus         9 ~~~~~~v~C~~~~L~~iP~~-lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~-~~~l~~L~~L~Ls   85 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTALPPD-LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV-DGTLPVLGTLDLS   85 (266)
T ss_dssp             STTCCEEECTTSCCSSCCSC-CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC-CSCCTTCCEEECC
T ss_pred             cCCCeEEEccCCCCCeeCcC-cCcCCCEEECcCCcCCCcCHHHhhccccccccccccc-ccccccc-ccccccccccccc
Confidence            45667789999999988754 1257999999999999998887999999999999999 7777775 5789999999999


Q ss_pred             ccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccc
Q 038551          113 WTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLN  192 (366)
Q Consensus       113 ~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~  192 (366)
                      +|+++..+..+..+++|+.|+++++ ....++...+..+.+++++.+.+|.+..             .....+..++.|+
T Consensus        86 ~N~l~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~l~~L~l~~n~l~~-------------l~~~~~~~l~~l~  151 (266)
T d1p9ag_          86 HNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKT-------------LPPGLLTPTPKLE  151 (266)
T ss_dssp             SSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCC-------------CCTTTTTTCTTCC
T ss_pred             ccccccccccccccccccccccccc-ccceeeccccccccccccccccccccce-------------eccccccccccch
Confidence            9999988888899999999999984 5556555557788999999999998875             3345556678888


Q ss_pred             eeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEecc
Q 038551          193 LLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKID  259 (366)
Q Consensus       193 ~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~  259 (366)
                      .+++++|.+..++.                            ..+..+++|++|++++|.++.++..
T Consensus       152 ~l~l~~N~l~~~~~----------------------------~~~~~l~~L~~L~Ls~N~L~~lp~~  190 (266)
T d1p9ag_         152 KLSLANNNLTELPA----------------------------GLLNGLENLDTLLLQENSLYTIPKG  190 (266)
T ss_dssp             EEECTTSCCSCCCT----------------------------TTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             hcccccccccccCc----------------------------cccccccccceeecccCCCcccChh
Confidence            88888776654321                            1145566777777777777666543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.74  E-value=1e-17  Score=148.92  Aligned_cols=242  Identities=16%  Similarity=0.107  Sum_probs=173.6

Q ss_pred             CCCccEEEccCCCCc---cccchhhcCCCCCCEEEccC-CCCCCCcchhhcCCCCCcEEEcccccccccc-ccccCCCCC
Q 038551           55 CPRLRTLFLPSNHLG---TVSNNFFHSMASLRVLILSY-NRSLENLPLGIFNLVSLQHLDISWTGITTLP-IELKYLVNL  129 (366)
Q Consensus        55 ~~~L~~L~l~~~~~~---~i~~~~~~~l~~L~~L~l~~-~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L  129 (366)
                      -.+++.|+++++.+.   .+|+. ++.+++|++|++++ |...+.+|..++++++|++|++++|++..++ ..+..+.+|
T Consensus        49 ~~~v~~L~L~~~~l~g~~~lp~~-l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L  127 (313)
T d1ogqa_          49 TYRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             cEEEEEEECCCCCCCCCCCCChH-HhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhh
Confidence            347899999999885   47777 88999999999986 6566689999999999999999999998654 458899999


Q ss_pred             CEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCccc-ceeeeccccchhhHhHh
Q 038551          130 KCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHL-NLLTITLQSFGALQRLL  208 (366)
Q Consensus       130 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L-~~L~l~~~~~~~~~~l~  208 (366)
                      +.++++.|.....+|.. +.+++.++.+++.+|.+.+             ..+..+..+..+ +.+.+..|...+...- 
T Consensus       128 ~~l~l~~N~~~~~~p~~-l~~l~~L~~l~l~~n~l~~-------------~ip~~~~~l~~l~~~l~~~~n~l~~~~~~-  192 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISG-------------AIPDSYGSFSKLFTSMTISRNRLTGKIPP-  192 (313)
T ss_dssp             CEEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEE-------------ECCGGGGCCCTTCCEEECCSSEEEEECCG-
T ss_pred             cccccccccccccCchh-hccCcccceeecccccccc-------------ccccccccccccccccccccccccccccc-
Confidence            99999998888888877 8999999999999999886             566777777665 7788888877653211 


Q ss_pred             hhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccccccccccCCCCCcceeeeecccceeE
Q 038551          209 SYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYKILKIEAR  288 (366)
Q Consensus       209 ~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~l~~l~~L  288 (366)
                      .+.++   ....+++.........+ ..+..+++++.++++++.+...+...         ..+++|+.|+++--.+.. 
T Consensus       193 ~~~~l---~~~~l~l~~~~~~~~~~-~~~~~~~~l~~l~~~~~~l~~~~~~~---------~~~~~L~~L~Ls~N~l~g-  258 (313)
T d1ogqa_         193 TFANL---NLAFVDLSRNMLEGDAS-VLFGSDKNTQKIHLAKNSLAFDLGKV---------GLSKNLNGLDLRNNRIYG-  258 (313)
T ss_dssp             GGGGC---CCSEEECCSSEEEECCG-GGCCTTSCCSEEECCSSEECCBGGGC---------CCCTTCCEEECCSSCCEE-
T ss_pred             ccccc---ccccccccccccccccc-cccccccccccccccccccccccccc---------ccccccccccCccCeecc-
Confidence            12222   23344444332211111 22567889999999998766443222         456778887775222110 


Q ss_pred             EeeccCccccccccccceEEeecCc-------ccCCcccccccCCCCCC
Q 038551          289 DMACTCSQYQACPRGLTKFEEHPLK-------RLECAELKELPLDCNHG  330 (366)
Q Consensus       289 ~l~~~c~~l~~~~~~L~~L~l~~~~-------~~~~~~L~~L~l~~n~~  330 (366)
                      .+   =..+..+++ |++|+|++|.       ..++.+|+.+.+++|+.
T Consensus       259 ~i---P~~l~~L~~-L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         259 TL---PQGLTQLKF-LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             CC---CGGGGGCTT-CCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSE
T ss_pred             cC---ChHHhCCCC-CCEEECcCCcccccCCCcccCCCCCHHHhCCCcc
Confidence            00   012444777 9999998887       34567788888888873

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=6.6e-17  Score=133.88  Aligned_cols=163  Identities=21%  Similarity=0.285  Sum_probs=107.2

Q ss_pred             CcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcC
Q 038551           23 GLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFN  102 (366)
Q Consensus        23 ~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~  102 (366)
                      .+.++.....+++++.|++.++.++.+.....+++|++|++++|.+..+++  +..+++|++|++++| ....++. +.+
T Consensus        29 ~~~~~~~~~~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n-~~~~~~~-l~~  104 (199)
T d2omxa2          29 NVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADITP-LAN  104 (199)
T ss_dssp             STTSEECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTT
T ss_pred             CCCCccCHHHhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCccc--ccCCccccccccccc-ccccccc-ccc
Confidence            333433334456777777777777776555667777777777777776654  667777777777777 4555553 667


Q ss_pred             CCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhh
Q 038551          103 LVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLV  182 (366)
Q Consensus       103 l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  182 (366)
                      ++.|++|+++++....++ .+..+++|+.+++++| .+..++.  +..+++|+.|++.+|.+++               .
T Consensus       105 l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~--l~~~~~L~~L~l~~n~l~~---------------l  165 (199)
T d2omxa2         105 LTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLNFSSNQVTD---------------L  165 (199)
T ss_dssp             CTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSS-CCCCCGG--GTTCTTCSEEECCSSCCCC---------------C
T ss_pred             cccccccccccccccccc-ccchhhhhHHhhhhhh-hhccccc--ccccccccccccccccccC---------------C
Confidence            777777777777665543 3566777777777773 4555443  6677777777777777654               2


Q ss_pred             hhhhcCcccceeeeccccchhhHhHh
Q 038551          183 EELLVLKHLNLLTITLQSFGALQRLL  208 (366)
Q Consensus       183 ~~l~~l~~L~~L~l~~~~~~~~~~l~  208 (366)
                      ..+..+++|+.|++++|.++.++.+.
T Consensus       166 ~~l~~l~~L~~L~ls~N~i~~i~~l~  191 (199)
T d2omxa2         166 KPLANLTTLERLDISSNKVSDISVLA  191 (199)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCCGGGG
T ss_pred             ccccCCCCCCEEECCCCCCCCCcccc
Confidence            34566777777777777666554433

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.9e-16  Score=138.58  Aligned_cols=202  Identities=21%  Similarity=0.254  Sum_probs=140.1

Q ss_pred             cEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcEEEcccc-
Q 038551           37 TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLP-LGIFNLVSLQHLDISWT-  114 (366)
Q Consensus        37 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~-  114 (366)
                      ..++.++++++.+|.. -.+.+++|++++|+|+.+++..|..+++|++|+++++ .+..++ ..+.++..++.+....+ 
T Consensus        14 ~~v~c~~~~L~~iP~~-ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n-~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          14 VTTSCPQQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             CEEECCSSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCCCCCCccCCC-CCCCCCEEECcCCcCCCCCHHHhhccccccccccccc-ccccccccccccccccccccccccc
Confidence            4567777788888764 1246899999999999999888999999999999999 555444 45677888888877644 


Q ss_pred             ccccccc-cccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccce
Q 038551          115 GITTLPI-ELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNL  193 (366)
Q Consensus       115 ~~~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  193 (366)
                      .++.++. .+.++++|++|++++| ....++...+....+|+.+++.+|.+..             .....+..+++|+.
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~l~l~~N~l~~-------------i~~~~f~~~~~L~~  157 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQA-------------LPDDTFRDLGNLTH  157 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCC-------------CCTTTTTTCTTCCE
T ss_pred             ccccccchhhcccccCCEEecCCc-ccccccccccchhcccchhhhccccccc-------------cChhHhccccchhh
Confidence            6777644 5889999999999995 5555555547788899999999999875             33455677888999


Q ss_pred             eeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEec
Q 038551          194 LTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKI  258 (366)
Q Consensus       194 L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~  258 (366)
                      |++++|.+..++. ..+..+++|....+..+....+.+.   .+..+++|++|++++|.+..++.
T Consensus       158 L~l~~N~l~~l~~-~~f~~l~~L~~l~l~~N~l~~i~~~---~f~~l~~L~~L~l~~N~i~~~~~  218 (284)
T d1ozna_         158 LFLHGNRISSVPE-RAFRGLHSLDRLLLHQNRVAHVHPH---AFRDLGRLMTLYLFANNLSALPT  218 (284)
T ss_dssp             EECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTT---TTTTCTTCCEEECCSSCCSCCCH
T ss_pred             cccccCcccccch-hhhccccccchhhhhhccccccChh---Hhhhhhhcccccccccccccccc
Confidence            9998888765533 1233333322222222222222222   25666666777776666665543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=3.6e-16  Score=130.45  Aligned_cols=158  Identities=22%  Similarity=0.312  Sum_probs=119.7

Q ss_pred             CCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEc
Q 038551           32 MWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDI  111 (366)
Q Consensus        32 ~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l  111 (366)
                      .+..++.|+++++.++.++....+++|++|++++|.++.+++  +..+++|++|++++| .++.++. +.++++|++|++
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n-~i~~l~~-l~~l~~L~~L~l  119 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSL  119 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEEC
T ss_pred             HhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccc--cccCccccccccccc-ccccccc-cccccccccccc
Confidence            356788888888888887666778888888888888887765  677888888888888 6677764 777888888888


Q ss_pred             cccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCccc
Q 038551          112 SWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHL  191 (366)
Q Consensus       112 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L  191 (366)
                      .+|.+..++ .+..+++++.++++++ .+...+.  +..+++|+++++.+|++.+               +..+.++++|
T Consensus       120 ~~~~~~~~~-~l~~l~~l~~l~~~~n-~l~~~~~--~~~l~~L~~l~l~~n~l~~---------------i~~l~~l~~L  180 (210)
T d1h6ta2         120 EHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISD---------------IVPLAGLTKL  180 (210)
T ss_dssp             TTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCC---------------CGGGTTCTTC
T ss_pred             ccccccccc-cccccccccccccccc-ccccccc--ccccccccccccccccccc---------------cccccCCCCC
Confidence            888877665 4677888888888874 5555443  6678888888888888764               2346778888


Q ss_pred             ceeeeccccchhhHhHhhhcc
Q 038551          192 NLLTITLQSFGALQRLLSYCR  212 (366)
Q Consensus       192 ~~L~l~~~~~~~~~~l~~~~~  212 (366)
                      +.|++++|.+..++.+..+.+
T Consensus       181 ~~L~Ls~N~i~~l~~l~~l~~  201 (210)
T d1h6ta2         181 QNLYLSKNHISDLRALAGLKN  201 (210)
T ss_dssp             CEEECCSSCCCBCGGGTTCTT
T ss_pred             CEEECCCCCCCCChhhcCCCC
Confidence            888888888877765444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=5.3e-16  Score=128.35  Aligned_cols=160  Identities=18%  Similarity=0.335  Sum_probs=136.3

Q ss_pred             CCccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCC
Q 038551           12 EKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNR   91 (366)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~   91 (366)
                      +..+.+++.++++.+++.++.+++|++|++++|.++.+++...+++|++|++++|.+..+++  +..+++|+.|+++++ 
T Consensus        40 ~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~~-  116 (199)
T d2omxa2          40 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-  116 (199)
T ss_dssp             TTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECCSS-
T ss_pred             cCCCEEECCCCCCCCccccccCCCcCcCccccccccCcccccCCcccccccccccccccccc--ccccccccccccccc-
Confidence            45678899999999998899999999999999999998777899999999999999988875  789999999999998 


Q ss_pred             CCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCcccccccc
Q 038551           92 SLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEAD  171 (366)
Q Consensus        92 ~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  171 (366)
                      ....++ .+..+++|++|++++|.+..++ .+..+++|+.|++.+| .+..++.  +.++++|++|++.+|++++     
T Consensus       117 ~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n-~l~~l~~--l~~l~~L~~L~ls~N~i~~-----  186 (199)
T d2omxa2         117 QITDID-PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSN-QVTDLKP--LANLTTLERLDISSNKVSD-----  186 (199)
T ss_dssp             CCCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCC-----
T ss_pred             cccccc-ccchhhhhHHhhhhhhhhcccc-cccccccccccccccc-cccCCcc--ccCCCCCCEEECCCCCCCC-----
Confidence            445444 3788999999999999998776 4789999999999994 6667664  8899999999999999874     


Q ss_pred             ccccCCchhhhhhhhcCccccee
Q 038551          172 SILFGDSEVLVEELLVLKHLNLL  194 (366)
Q Consensus       172 ~~~~~~~~~~~~~l~~l~~L~~L  194 (366)
                                +..++.+++|+.|
T Consensus       187 ----------i~~l~~L~~L~~L  199 (199)
T d2omxa2         187 ----------ISVLAKLTNLESL  199 (199)
T ss_dssp             ----------CGGGGGCTTCSEE
T ss_pred             ----------CccccCCCCCCcC
Confidence                      2346667777654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=3.4e-16  Score=132.34  Aligned_cols=187  Identities=19%  Similarity=0.216  Sum_probs=82.1

Q ss_pred             CCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEE
Q 038551           54 TCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLN  133 (366)
Q Consensus        54 ~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~  133 (366)
                      .+.+|+.|++.+|.++++. + +..+++|++|++++| .+..+++ +.++++|+++++++|.++.++ .+..+++|+.++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~-~-l~~l~~L~~L~ls~n-~i~~~~~-l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~  113 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTIE-G-VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD  113 (227)
T ss_dssp             HHHTCCEEECTTSCCCCCT-T-GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred             HcCCcCEEECCCCCCCcch-h-HhcCCCCcEeecCCc-eeecccc-ccccccccccccccccccccc-cccccccccccc
Confidence            3344444444444444442 2 344444444444444 2333222 344444444444444444333 234444444444


Q ss_pred             cccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhccc
Q 038551          134 LEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRL  213 (366)
Q Consensus       134 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l  213 (366)
                      ++++. ....+.  +...+.++.+.+..+.+..               ...+..+++|+.|.+.++.......+..+++ 
T Consensus       114 l~~~~-~~~~~~--~~~~~~~~~l~~~~~~~~~---------------~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~-  174 (227)
T d1h6ua2         114 LTSTQ-ITDVTP--LAGLSNLQVLYLDLNQITN---------------ISPLAGLTNLQYLSIGNAQVSDLTPLANLSK-  174 (227)
T ss_dssp             CTTSC-CCCCGG--GTTCTTCCEEECCSSCCCC---------------CGGGGGCTTCCEEECCSSCCCCCGGGTTCTT-
T ss_pred             ccccc-ccccch--hccccchhhhhchhhhhch---------------hhhhccccccccccccccccccchhhccccc-
Confidence            44421 122111  3334444444444444332               1123334444444444444433333222222 


Q ss_pred             CcccceeeeccccCCCCCcchhhhccCCcCcEEEeccCccceEeccccccccccccCCCCCcceeeee
Q 038551          214 GSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFNDLEELKIDAGELKRIREICGFHSLQKVFYK  281 (366)
Q Consensus       214 ~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~  281 (366)
                          ++.|+++++ .++..  ..++.+++|++|++++|++++++.          ...+++|+.|+++
T Consensus       175 ----L~~L~Ls~n-~l~~l--~~l~~l~~L~~L~Ls~N~lt~i~~----------l~~l~~L~~L~ls  225 (227)
T d1h6ua2         175 ----LTTLKADDN-KISDI--SPLASLPNLIEVHLKNNQISDVSP----------LANTSNLFIVTLT  225 (227)
T ss_dssp             ----CCEEECCSS-CCCCC--GGGGGCTTCCEEECTTSCCCBCGG----------GTTCTTCCEEEEE
T ss_pred             ----ceecccCCC-ccCCC--hhhcCCCCCCEEECcCCcCCCCcc----------cccCCCCCEEEee
Confidence                222333332 12221  125667777777777777776542          1557777777663

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=2.1e-16  Score=131.91  Aligned_cols=180  Identities=22%  Similarity=0.283  Sum_probs=126.5

Q ss_pred             EcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccccccccc
Q 038551           40 SLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTL  119 (366)
Q Consensus        40 ~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l  119 (366)
                      .+..+.+.+......+..|+.|++++|.+..++.  +..+++|++|++++| .++.++. +..+++|++|++++|.++.+
T Consensus        30 ~l~~~~~~~~~~~~~L~~L~~L~l~~~~i~~l~~--l~~l~~L~~L~L~~n-~i~~l~~-~~~l~~L~~L~l~~n~i~~l  105 (210)
T d1h6ta2          30 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKDL  105 (210)
T ss_dssp             HTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCG
T ss_pred             HhCcCccCCccCHHHhcCccEEECcCCCCCCchh--HhhCCCCCEEeCCCc-cccCccc-cccCcccccccccccccccc
Confidence            3444445443222345678888888888877764  677888888888888 6666664 67788888888888888877


Q ss_pred             cccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccc
Q 038551          120 PIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQ  199 (366)
Q Consensus       120 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  199 (366)
                      + .+..+++|+.+++.+| ....++.  +.+++.++.+.+.+|.+.+               ......+++|+.+++++|
T Consensus       106 ~-~l~~l~~L~~L~l~~~-~~~~~~~--l~~l~~l~~l~~~~n~l~~---------------~~~~~~l~~L~~l~l~~n  166 (210)
T d1h6ta2         106 S-SLKDLKKLKSLSLEHN-GISDING--LVHLPQLESLYLGNNKITD---------------ITVLSRLTKLDTLSLEDN  166 (210)
T ss_dssp             G-GGTTCTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCCC---------------CGGGGGCTTCSEEECCSS
T ss_pred             c-cccccccccccccccc-ccccccc--ccccccccccccccccccc---------------cccccccccccccccccc
Confidence            7 4778888888888884 4455543  6788888888888888764               234556788888888888


Q ss_pred             cchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEecc
Q 038551          200 SFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYF  250 (366)
Q Consensus       200 ~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~  250 (366)
                      .+..++.+..+++     ++.|+++++ .++..  ..+.++++|++|++++
T Consensus       167 ~l~~i~~l~~l~~-----L~~L~Ls~N-~i~~l--~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         167 QISDIVPLAGLTK-----LQNLYLSKN-HISDL--RALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCCCCGGGTTCTT-----CCEEECCSS-CCCBC--GGGTTCTTCSEEEEEE
T ss_pred             cccccccccCCCC-----CCEEECCCC-CCCCC--hhhcCCCCCCEEEccC
Confidence            8877665444433     444666554 23332  3477888888888864

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.5e-15  Score=128.25  Aligned_cols=200  Identities=21%  Similarity=0.242  Sum_probs=152.9

Q ss_pred             cCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchh
Q 038551           20 AGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLG   99 (366)
Q Consensus        20 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~   99 (366)
                      ....+.++.....+.+|+.|++.+|.++.++...++++|++|++++|.+..+.+  +..+++|+++++++| ..+.++. 
T Consensus        27 ~~~~~~d~~~~~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n-~~~~i~~-  102 (227)
T d1h6ua2          27 GKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVSA-  102 (227)
T ss_dssp             TCSSTTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCGG-
T ss_pred             CCCCcCCcCCHHHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccc--ccccccccccccccc-ccccccc-
Confidence            445555555566678899999999999988655889999999999999988765  788999999999998 6666654 


Q ss_pred             hcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCch
Q 038551          100 IFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSE  179 (366)
Q Consensus       100 ~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  179 (366)
                      +..+++|++++++++....++. +...+.++.+.+..+ .+.....  +.++++|++|.+.+|.+..             
T Consensus       103 l~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~~l~~~~~-~~~~~~~--~~~~~~L~~L~l~~n~~~~-------------  165 (227)
T d1h6ua2         103 IAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVSD-------------  165 (227)
T ss_dssp             GTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCC-------------
T ss_pred             ccccccccccccccccccccch-hccccchhhhhchhh-hhchhhh--hcccccccccccccccccc-------------
Confidence            7789999999999887765543 567788999999874 4444333  6688899999999998764             


Q ss_pred             hhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEecc
Q 038551          180 VLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYF  250 (366)
Q Consensus       180 ~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~  250 (366)
                        ...+..+++|+.|++++|.+.+++.+..+++     ++.|+++++ .++..+  .+..+++|+.|++++
T Consensus       166 --~~~l~~l~~L~~L~Ls~n~l~~l~~l~~l~~-----L~~L~Ls~N-~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         166 --LTPLANLSKLTTLKADDNKISDISPLASLPN-----LIEVHLKNN-QISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             --CGGGTTCTTCCEEECCSSCCCCCGGGGGCTT-----CCEEECTTS-CCCBCG--GGTTCTTCCEEEEEE
T ss_pred             --chhhcccccceecccCCCccCCChhhcCCCC-----CCEEECcCC-cCCCCc--ccccCCCCCEEEeeC
Confidence              2346778999999999998888776554444     555777775 344333  378899999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=5e-15  Score=126.16  Aligned_cols=201  Identities=18%  Similarity=0.171  Sum_probs=123.7

Q ss_pred             cEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCC--CCCCCccEEEccCCCCc-cccchhhcCCCCCCEEEccCCC
Q 038551           15 NFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEI--PTCPRLRTLFLPSNHLG-TVSNNFFHSMASLRVLILSYNR   91 (366)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~-~i~~~~~~~l~~L~~L~l~~~~   91 (366)
                      +.+.+.+.++.++|.-. .+++++|++++|.++.++..  .++++|++|++++|.+. .+++..|..++.++++.+..+.
T Consensus        11 ~~i~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n   89 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   89 (242)
T ss_dssp             SEEEEESCSCSSCCSCS-CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred             CEEEEeCCCCCCcCCCC-CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence            46788888888886421 25788888888888887764  67888888888888764 4566667778888888776543


Q ss_pred             CCCCc-chhhcCCCCCcEEEccccccccccc--cccCCCCCCEEEcccccccCccChhhhcCCc-CCcEEEeecCCcccc
Q 038551           92 SLENL-PLGIFNLVSLQHLDISWTGITTLPI--ELKYLVNLKCLNLEYTFRLSRIPQQVISDLK-MLRALRMFECGFNVE  167 (366)
Q Consensus        92 ~~~~l-~~~~~~l~~L~~L~l~~~~~~~l~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~  167 (366)
                      .+... +..+.++++|+++++.++.+...+.  .+..+..+..+...+ ..+..++...+..++ .++.+.+.+|.+.. 
T Consensus        90 ~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n-~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~-  167 (242)
T d1xwdc1          90 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-INIHTIERNSFVGLSFESVILWLNKNGIQE-  167 (242)
T ss_dssp             TCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESC-TTCCEECTTSSTTSBSSCEEEECCSSCCCE-
T ss_pred             cccccccccccccccccccccchhhhcccccccccccccccccccccc-cccccccccccccccccceeeecccccccc-
Confidence            44433 3456778888888888887765543  233444444444444 445555443344443 56666666666553 


Q ss_pred             ccccccccCCchhhhhhhhcCcccceeeeccccchhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEE
Q 038551          168 LEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQ  247 (366)
Q Consensus       168 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~  247 (366)
                                   .........++                           ..+.......++..+...+.++++|++|+
T Consensus       168 -------------i~~~~~~~~~l---------------------------~~~~~l~~n~l~~l~~~~f~~l~~L~~L~  207 (242)
T d1xwdc1         168 -------------IHNCAFNGTQL---------------------------DELNLSDNNNLEELPNDVFHGASGPVILD  207 (242)
T ss_dssp             -------------ECTTTTTTCCE---------------------------EEEECTTCTTCCCCCTTTTTTSCCCSEEE
T ss_pred             -------------cccccccchhh---------------------------hccccccccccccccHHHhcCCCCCCEEE
Confidence                         11111111222                           22222222223333223377899999999


Q ss_pred             eccCccceEec
Q 038551          248 LYFNDLEELKI  258 (366)
Q Consensus       248 l~~~~l~~l~~  258 (366)
                      +++|+++.++.
T Consensus       208 Ls~N~l~~l~~  218 (242)
T d1xwdc1         208 ISRTRIHSLPS  218 (242)
T ss_dssp             CTTSCCCCCCS
T ss_pred             CCCCcCCccCH
Confidence            99999998865

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.60  E-value=3.2e-14  Score=127.48  Aligned_cols=177  Identities=21%  Similarity=0.247  Sum_probs=109.2

Q ss_pred             CccEEEecCCCcccCCCCCCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCC
Q 038551           13 KENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRS   92 (366)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~   92 (366)
                      ....+++.++++..+|..  .++|++|++++|.++.+|..  ..+|+.|++.+|.++.++.  +  .+.|++|++++| .
T Consensus        39 ~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~--l--p~~L~~L~L~~n-~  109 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSD--L--PPLLEYLGVSNN-Q  109 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCS--C--CTTCCEEECCSS-C
T ss_pred             CCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhh--h--cccccccccccc-c
Confidence            455777888888877753  46788888888888877653  4578888888887776654  2  245888888888 6


Q ss_pred             CCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccc
Q 038551           93 LENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADS  172 (366)
Q Consensus        93 ~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  172 (366)
                      +..+|. ++.+++|++|++.++.+...+..   ...+..+.+..+ ...... . +..++.++.+.+.++..........
T Consensus       110 l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~-~~~~~~-~-l~~l~~l~~L~l~~n~~~~~~~~~~  182 (353)
T d1jl5a_         110 LEKLPE-LQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNN-QLEELP-E-LQNLPFLTAIYADNNSLKKLPDLPL  182 (353)
T ss_dssp             CSSCCC-CTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSSCC-C-CTTCTTCCEEECCSSCCSSCCCCCT
T ss_pred             cccccc-hhhhccceeeccccccccccccc---cccccchhhccc-cccccc-c-ccccccceecccccccccccccccc
Confidence            677775 56778888888888777655532   345556665542 222221 1 5566777888777766543211000


Q ss_pred             c-----ccCCchhhhhhhhcCcccceeeeccccchhhH
Q 038551          173 I-----LFGDSEVLVEELLVLKHLNLLTITLQSFGALQ  205 (366)
Q Consensus       173 ~-----~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  205 (366)
                      .     ..............++.|+.+.+.++....++
T Consensus       183 ~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  220 (353)
T d1jl5a_         183 SLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP  220 (353)
T ss_dssp             TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCC
T ss_pred             cccccccccccccccccccccccccccccccccccccc
Confidence            0     00000112233455677788887776655443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.58  E-value=8.4e-14  Score=124.68  Aligned_cols=139  Identities=22%  Similarity=0.251  Sum_probs=104.4

Q ss_pred             CcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccc
Q 038551           34 KETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISW  113 (366)
Q Consensus        34 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~  113 (366)
                      .+++.|++++++++.+|.  ..++|++|++++|.++.+|..    +.+|+.|++++| .++.++..   .+.|++|++++
T Consensus        38 ~~l~~LdLs~~~L~~lp~--~~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~l~~n-~l~~l~~l---p~~L~~L~L~~  107 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPE--LPPHLESLVASCNSLTELPEL----PQSLKSLLVDNN-NLKALSDL---PPLLEYLGVSN  107 (353)
T ss_dssp             HTCSEEECTTSCCSCCCS--CCTTCSEEECCSSCCSSCCCC----CTTCCEEECCSS-CCSCCCSC---CTTCCEEECCS
T ss_pred             cCCCEEEeCCCCCCCCCC--CCCCCCEEECCCCCCcccccc----hhhhhhhhhhhc-ccchhhhh---ccccccccccc
Confidence            468999999999999885  457899999999999998864    468999999999 66666542   24699999999


Q ss_pred             cccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccce
Q 038551          114 TGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNL  193 (366)
Q Consensus       114 ~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  193 (366)
                      |.+..+|. ++.+++|+++++.++ .+...+.    ....+..+.+..+....               ...+..++.++.
T Consensus       108 n~l~~lp~-~~~l~~L~~L~l~~~-~~~~~~~----~~~~l~~l~~~~~~~~~---------------~~~l~~l~~l~~  166 (353)
T d1jl5a_         108 NQLEKLPE-LQNSSFLKIIDVDNN-SLKKLPD----LPPSLEFIAAGNNQLEE---------------LPELQNLPFLTA  166 (353)
T ss_dssp             SCCSSCCC-CTTCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSS---------------CCCCTTCTTCCE
T ss_pred             cccccccc-hhhhccceeeccccc-ccccccc----ccccccchhhccccccc---------------ccccccccccee
Confidence            99999985 578999999999984 4444443    23456777776655442               234455677777


Q ss_pred             eeeccccchh
Q 038551          194 LTITLQSFGA  203 (366)
Q Consensus       194 L~l~~~~~~~  203 (366)
                      +.+..+....
T Consensus       167 L~l~~n~~~~  176 (353)
T d1jl5a_         167 IYADNNSLKK  176 (353)
T ss_dssp             EECCSSCCSS
T ss_pred             cccccccccc
Confidence            7777665554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.4e-14  Score=124.97  Aligned_cols=185  Identities=16%  Similarity=0.139  Sum_probs=106.8

Q ss_pred             CCCCCccEEEccCCCCcc-ccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcccc-ccc--cccccccCCCC
Q 038551           53 PTCPRLRTLFLPSNHLGT-VSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWT-GIT--TLPIELKYLVN  128 (366)
Q Consensus        53 ~~~~~L~~L~l~~~~~~~-i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~-~~~--~l~~~l~~l~~  128 (366)
                      ....+|++|++++|.+.. ....++..+++|++|+++++......+..+..+++|++|++++| .++  .+.....++++
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence            455577777777776542 22334667777777777777333344555666777777777775 554  23333456777


Q ss_pred             CCEEEcccccccCccC--hhhhcCCcCCcEEEeecCC--ccccccccccccCCchhhhhhhhcCcccceeeeccccchhh
Q 038551          129 LKCLNLEYTFRLSRIP--QQVISDLKMLRALRMFECG--FNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGAL  204 (366)
Q Consensus       129 L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  204 (366)
                      |++|++++|..+.+..  ..+...+++|+.|++.++.  +.+            .........+++|++|+++++.....
T Consensus       123 L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~------------~~l~~l~~~~~~L~~L~L~~~~~itd  190 (284)
T d2astb2         123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK------------SDLSTLVRRCPNLVHLDLSDSVMLKN  190 (284)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH------------HHHHHHHHHCTTCSEEECTTCTTCCG
T ss_pred             ccccccccccccccccchhhhcccccccchhhhccccccccc------------ccccccccccccccccccccccCCCc
Confidence            7777777765554321  1112234677777777652  332            12333334567777777766432221


Q ss_pred             HhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccC
Q 038551          205 QRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFN  251 (366)
Q Consensus       205 ~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  251 (366)
                      ..+..+.++++  ++.|++++|..+++..+..++.+++|+.|++++|
T Consensus       191 ~~~~~l~~~~~--L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         191 DCFQEFFQLNY--LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGGGGGCTT--CCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             hhhhhhcccCc--CCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            22222333333  5557777776666666666677777777777766

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.52  E-value=2.9e-14  Score=116.94  Aligned_cols=108  Identities=25%  Similarity=0.265  Sum_probs=55.9

Q ss_pred             CccEEEccCCCCcc-ccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEc
Q 038551           57 RLRTLFLPSNHLGT-VSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNL  134 (366)
Q Consensus        57 ~L~~L~l~~~~~~~-i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l  134 (366)
                      ++++|++++|.|+. ++...|..+++|+.|++++|......+..+..+++|++|++++|+++.+|.. +.++++|++|++
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L  109 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccccc
Confidence            44445555554432 3333355555555555555522223334445555555555555555555432 455556666666


Q ss_pred             ccccccCccChhhhcCCcCCcEEEeecCCcc
Q 038551          135 EYTFRLSRIPQQVISDLKMLRALRMFECGFN  165 (366)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  165 (366)
                      ++ +.+..++.+.+..+++|+++++.+|.+.
T Consensus       110 ~~-N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         110 YD-NQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CS-SCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CC-ccccccCHHHhcCCcccccccccccccc
Confidence            55 3455555444555666666666666554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.50  E-value=2.4e-14  Score=117.40  Aligned_cols=131  Identities=22%  Similarity=0.209  Sum_probs=110.1

Q ss_pred             eccCcCCccEEEecCCCcccCCCCCCCCcccEEEcccCCccc-cCCC--CCCCCccEEEccCCCCccccchhhcCCCCCC
Q 038551            7 STINKEKENFLVLAGVGLTEAPSIGMWKETTRMSLMQNAIQN-LTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLR   83 (366)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~   83 (366)
                      |.|.   ...+++.++++..+|.-- .+++++|++++|.++. ++..  ..+++|+.|++++|.+..+++..+..+++|+
T Consensus         6 C~C~---~~~v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~   81 (192)
T d1w8aa_           6 CHCE---GTTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ   81 (192)
T ss_dssp             SEEE---TTEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             CEEc---CCEEEEeCCCcCccCCCC-CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccc
Confidence            5554   347899999999997522 3789999999999986 4333  7899999999999999988888899999999


Q ss_pred             EEEccCCCCCCCcc-hhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcccccccCc
Q 038551           84 VLILSYNRSLENLP-LGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSR  142 (366)
Q Consensus        84 ~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~  142 (366)
                      +|++++| .++.+| ..|.++++|++|+|++|.++.+|.. +..+++|+++++++|+....
T Consensus        82 ~L~Ls~N-~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_          82 ELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             EEECCSC-CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             eeeeccc-cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccc
Confidence            9999999 677665 5689999999999999999998765 78999999999999644333

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=1.1e-13  Score=104.83  Aligned_cols=101  Identities=23%  Similarity=0.201  Sum_probs=43.7

Q ss_pred             EEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccc
Q 038551           60 TLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFR  139 (366)
Q Consensus        60 ~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~  139 (366)
                      +|++++|+++.++.  +..+++|++|++++| .++.+|+.++.+++|++|++++|.++.+|. +..+++|+++++++ +.
T Consensus         2 ~L~Ls~n~l~~l~~--l~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~-N~   76 (124)
T d1dcea3           2 VLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCN-NR   76 (124)
T ss_dssp             EEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS-SC
T ss_pred             EEEcCCCCCCCCcc--cccCCCCCEEECCCC-ccCcchhhhhhhhcccccccccccccccCc-cccccccCeEECCC-Cc
Confidence            34444444444432  344444444444444 334444444444444444444444444432 44444444444444 23


Q ss_pred             cCccCh-hhhcCCcCCcEEEeecCCcc
Q 038551          140 LSRIPQ-QVISDLKMLRALRMFECGFN  165 (366)
Q Consensus       140 ~~~~~~-~~~~~~~~L~~L~l~~~~~~  165 (366)
                      +..++. ..+..+++|+.+++.+|.+.
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            333321 11344444445554444443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.3e-13  Score=117.15  Aligned_cols=177  Identities=15%  Similarity=0.134  Sum_probs=122.8

Q ss_pred             CccEEEecCCCcccCC--CCCCCCcccEEEcccCCccc-cCCC--CCCCCccEEEccC-CCCccccchhhcCCCCCCEEE
Q 038551           13 KENFLVLAGVGLTEAP--SIGMWKETTRMSLMQNAIQN-LTEI--PTCPRLRTLFLPS-NHLGTVSNNFFHSMASLRVLI   86 (366)
Q Consensus        13 ~~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~-l~~~--~~~~~L~~L~l~~-~~~~~i~~~~~~~l~~L~~L~   86 (366)
                      ..+.+++.++.+..+|  .+.++++|+.|++++|.+.. ++..  ..++.++.+.+.. +.+..+++..|..+++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            4667888888888884  37889999999999998776 4433  6788888888764 477777777788899999999


Q ss_pred             ccCCCCCCCcch--hhcCCCCCcEEEcccccccccccc-ccCC-CCCCEEEcccccccCccChhhhcCCcCCcEEE-eec
Q 038551           87 LSYNRSLENLPL--GIFNLVSLQHLDISWTGITTLPIE-LKYL-VNLKCLNLEYTFRLSRIPQQVISDLKMLRALR-MFE  161 (366)
Q Consensus        87 l~~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~l~~~-l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~-l~~  161 (366)
                      ++++ .++..+.  .+..+..+..+....+.+..++.. +..+ ..++.+++.+ +.+..++.. .....++.++. +.+
T Consensus       110 l~~~-~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~-n~l~~i~~~-~~~~~~l~~~~~l~~  186 (242)
T d1xwdc1         110 ISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNC-AFNGTQLDELNLSDN  186 (242)
T ss_dssp             EESC-CCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTT-TTTTCCEEEEECTTC
T ss_pred             cchh-hhcccccccccccccccccccccccccccccccccccccccceeeeccc-ccccccccc-cccchhhhccccccc
Confidence            9998 5554443  234455566666666677766543 4444 4788888887 567777766 33455555554 455


Q ss_pred             CCccccccccccccCCchhhhhhhhcCcccceeeeccccchhhH
Q 038551          162 CGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGALQ  205 (366)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  205 (366)
                      |.+..             -....+..+++|+.|++++|++..++
T Consensus       187 n~l~~-------------l~~~~f~~l~~L~~L~Ls~N~l~~l~  217 (242)
T d1xwdc1         187 NNLEE-------------LPNDVFHGASGPVILDISRTRIHSLP  217 (242)
T ss_dssp             TTCCC-------------CCTTTTTTSCCCSEEECTTSCCCCCC
T ss_pred             ccccc-------------ccHHHhcCCCCCCEEECCCCcCCccC
Confidence            66653             22334677888999999888777654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=6.9e-14  Score=121.93  Aligned_cols=200  Identities=17%  Similarity=0.120  Sum_probs=126.0

Q ss_pred             cEEEcccCCccc--cCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCC-C-cchhhcCCCCCcEEEcc
Q 038551           37 TRMSLMQNAIQN--LTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLE-N-LPLGIFNLVSLQHLDIS  112 (366)
Q Consensus        37 ~~L~l~~~~~~~--l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~-~-l~~~~~~l~~L~~L~l~  112 (366)
                      +++|++++.+..  +.... -.....+.+....+...... .....+|++|+++++ .++ . +...+..+++|++|++.
T Consensus         3 ~~lDLs~~~l~~~~l~~l~-~~~~~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~-~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLL-SQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHH-HTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHH-hccceEeeccccccccchhh-hccCCCCCEEECCCC-ccCHHHHHHHHHhCCCccccccc
Confidence            467787776542  11110 01234455554433322222 334668999999988 443 2 34556788999999999


Q ss_pred             ccccc-cccccccCCCCCCEEEcccccccCccCh-hhhcCCcCCcEEEeecCC-ccccccccccccCCchhhhhhhhc-C
Q 038551          113 WTGIT-TLPIELKYLVNLKCLNLEYTFRLSRIPQ-QVISDLKMLRALRMFECG-FNVELEADSILFGDSEVLVEELLV-L  188 (366)
Q Consensus       113 ~~~~~-~l~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~-l  188 (366)
                      +|.+. ..+..+..+++|++|++++|+.++.... .+..++++|++|++++|. +++            ......+.. .
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~------------~~~~~~~~~~~  147 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE------------KHVQVAVAHVS  147 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH------------HHHHHHHHHSC
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccccccccccccc------------ccchhhhcccc
Confidence            98776 4445577888999999999877765332 224578899999998874 432            223333333 4


Q ss_pred             cccceeeecccc--c--hhhHhHhhhcccCcccceeeeccccCCCCCcchhhhccCCcCcEEEeccC-ccce
Q 038551          189 KHLNLLTITLQS--F--GALQRLLSYCRLGSISTQCLCLRHLNNSNSLSVFAFASLRHLRTLQLYFN-DLEE  255 (366)
Q Consensus       189 ~~L~~L~l~~~~--~--~~~~~l~~~~~l~~l~l~~L~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~  255 (366)
                      +.|+.|++++..  .  .++..+.  .++++  ++.|++.++..+++..+..+.++++|++|++++| .+++
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l~~l~--~~~~~--L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~  215 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDLSTLV--RRCPN--LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP  215 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHH--HHCTT--CSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred             cccchhhhcccccccccccccccc--ccccc--ccccccccccCCCchhhhhhcccCcCCEEECCCCCCCCh
Confidence            678888887542  2  2233332  22232  6668888888887777777888888999999887 6653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=1.9e-13  Score=103.48  Aligned_cols=118  Identities=22%  Similarity=0.204  Sum_probs=85.6

Q ss_pred             cEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcccccc
Q 038551           37 TRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGI  116 (366)
Q Consensus        37 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~  116 (366)
                      |.|++++|.++.++....+++|++|++++|.++.+|+. +..+++|++|++++| .++.+|. +..+++|++|++++|.+
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~-~~~l~~L~~L~l~~N-~i~~l~~-~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDN-ALENVDG-VANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhh-hhhhhcccccccccc-cccccCc-cccccccCeEECCCCcc
Confidence            56788888888777667778888888888888888766 677888888888888 6676664 77888888888888888


Q ss_pred             ccccc--cccCCCCCCEEEccccccc--CccChhhhcCCcCCcEE
Q 038551          117 TTLPI--ELKYLVNLKCLNLEYTFRL--SRIPQQVISDLKMLRAL  157 (366)
Q Consensus       117 ~~l~~--~l~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~~L~~L  157 (366)
                      +.++.  .+..+++|+++++++|+..  ...+..+...+++|+.+
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            76653  4677888888888884332  12233334455666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.5e-14  Score=112.27  Aligned_cols=106  Identities=16%  Similarity=0.185  Sum_probs=57.8

Q ss_pred             CCCCCCCcccEEEcccCCccccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchh-hcCCCC
Q 038551           28 PSIGMWKETTRMSLMQNAIQNLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLG-IFNLVS  105 (366)
Q Consensus        28 ~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~-~~~l~~  105 (366)
                      |.+.++.+++.|++++|.|+.++.. ..+++|+.|++++|.+..++.  +..+++|++|++++| .++.++.. +..+++
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~--~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNN-RICRIGEGLDQALPD   88 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECC--CCCCSSCCEEECCSS-CCCEECSCHHHHCTT
T ss_pred             HhccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCC--cccCcchhhhhcccc-cccCCCccccccccc
Confidence            4444555666666666666665544 445566666666666655532  555566666666666 44444432 234555


Q ss_pred             CcEEEccccccccccc--cccCCCCCCEEEccc
Q 038551          106 LQHLDISWTGITTLPI--ELKYLVNLKCLNLEY  136 (366)
Q Consensus       106 L~~L~l~~~~~~~l~~--~l~~l~~L~~L~l~~  136 (366)
                      |++|++++|.++.++.  .+..+++|+++++.+
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~  121 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILR  121 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCS
T ss_pred             cccceeccccccccccccccccccccchhhcCC
Confidence            6666666655554442  244555555555555

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.4e-13  Score=107.97  Aligned_cols=123  Identities=22%  Similarity=0.297  Sum_probs=105.9

Q ss_pred             CCccEEEecCCCcccCCCC-CCCCcccEEEcccCCccccCCCCCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCC
Q 038551           12 EKENFLVLAGVGLTEAPSI-GMWKETTRMSLMQNAIQNLTEIPTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYN   90 (366)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~   90 (366)
                      -+.+.+++.++++..++.+ ..+++|+.|++++|.++.++....+++|++|++++|.+..+++.++..+++|+.|++++|
T Consensus        18 ~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N   97 (162)
T d1a9na_          18 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN   97 (162)
T ss_dssp             TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC
T ss_pred             CcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccccccccceeccc
Confidence            3567789999999999665 668999999999999999977789999999999999999999887888999999999999


Q ss_pred             CCCCCcch--hhcCCCCCcEEEccccccccccc----cccCCCCCCEEEcc
Q 038551           91 RSLENLPL--GIFNLVSLQHLDISWTGITTLPI----ELKYLVNLKCLNLE  135 (366)
Q Consensus        91 ~~~~~l~~--~~~~l~~L~~L~l~~~~~~~l~~----~l~~l~~L~~L~l~  135 (366)
                       .++.++.  .+..+++|++|++++|.++..|.    .+..+++|++||..
T Consensus        98 -~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          98 -SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             -CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             -cccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence             6776653  57889999999999999987764    36778888888743

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.21  E-value=2.1e-13  Score=112.08  Aligned_cols=110  Identities=19%  Similarity=0.205  Sum_probs=59.4

Q ss_pred             hcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccccccccccccccCCCCCCEEEcccccccCccChhhhcCCcCCc
Q 038551           76 FHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDISWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQQVISDLKMLR  155 (366)
Q Consensus        76 ~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  155 (366)
                      +..+++|+.|++++| .++.++ .+..+++|++|++++|.++.+|.....+++|+.|++.+ +.+..++.  +.++++|+
T Consensus        44 l~~L~~L~~L~Ls~n-~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~-N~i~~l~~--~~~l~~L~  118 (198)
T d1m9la_          44 LSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY-NQIASLSG--IEKLVNLR  118 (198)
T ss_dssp             HHHTTTCCEEECSEE-EESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSE-EECCCHHH--HHHHHHSS
T ss_pred             HhcccccceeECccc-CCCCcc-cccCCccccChhhccccccccccccccccccccccccc-cccccccc--cccccccc
Confidence            555566666666665 444443 25555666666666666555554434445566666665 34444432  45555666


Q ss_pred             EEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccch
Q 038551          156 ALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFG  202 (366)
Q Consensus       156 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  202 (366)
                      .|++++|.+..            ...+..+..+++|+.|++++|.+.
T Consensus       119 ~L~L~~N~i~~------------~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         119 VLYMSNNKITN------------WGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             EEEESEEECCC------------HHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccchhcc------------ccccccccCCCccceeecCCCccc
Confidence            66666665553            122344555666666666665544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.19  E-value=2.7e-12  Score=105.35  Aligned_cols=127  Identities=22%  Similarity=0.293  Sum_probs=90.3

Q ss_pred             cccEEEcccC--CccccCCC-CCCCCccEEEccCCCCccccchhhcCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEc
Q 038551           35 ETTRMSLMQN--AIQNLTEI-PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILSYNRSLENLPLGIFNLVSLQHLDI  111 (366)
Q Consensus        35 ~L~~L~l~~~--~~~~l~~~-~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l  111 (366)
                      .++.+++.+.  .++.++.. ..+++|+.|++++|.|..++.  +..+++|++|++++| .++.+|.....+++|++|++
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~--l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRN-LIKKIENLDAVADTLEELWI  100 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCC--HHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEEC
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccCCCCccc--ccCCccccChhhccc-cccccccccccccccccccc
Confidence            3455555543  34444433 567788888888888887754  777888888888888 66777765555667888888


Q ss_pred             cccccccccccccCCCCCCEEEcccccccCccCh-hhhcCCcCCcEEEeecCCccc
Q 038551          112 SWTGITTLPIELKYLVNLKCLNLEYTFRLSRIPQ-QVISDLKMLRALRMFECGFNV  166 (366)
Q Consensus       112 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~  166 (366)
                      ++|.++.++ .+..+++|++|++++ +.+..++. ..+..+++|+.|++.+|++..
T Consensus       101 ~~N~i~~l~-~~~~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         101 SYNQIASLS-GIEKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             SEEECCCHH-HHHHHHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             ccccccccc-ccccccccccccccc-chhccccccccccCCCccceeecCCCcccc
Confidence            888888765 367788888888888 45555542 236788888888888887653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.7e-11  Score=113.12  Aligned_cols=28  Identities=25%  Similarity=0.049  Sum_probs=22.1

Q ss_pred             cceEEeecCc------------ccCCcccccccCCCCCCC
Q 038551          304 LTKFEEHPLK------------RLECAELKELPLDCNHGL  331 (366)
Q Consensus       304 L~~L~l~~~~------------~~~~~~L~~L~l~~n~~~  331 (366)
                      |++|+|++|.            +..++.|++|++++|++.
T Consensus       371 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             CCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence            8888888877            456788888888888875

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.13  E-value=2.9e-11  Score=107.92  Aligned_cols=87  Identities=20%  Similarity=0.152  Sum_probs=44.4

Q ss_pred             CCCCCcccEEEcccCCccc-----cCCC-CCCCCccEEEccCCCCccc----cc------hhhcCCCCCCEEEccCCCCC
Q 038551           30 IGMWKETTRMSLMQNAIQN-----LTEI-PTCPRLRTLFLPSNHLGTV----SN------NFFHSMASLRVLILSYNRSL   93 (366)
Q Consensus        30 ~~~~~~L~~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~~i----~~------~~~~~l~~L~~L~l~~~~~~   93 (366)
                      +.....++.|++++|.+..     +... ...++|+.++++++.+...    +.      ..+..+++|+.|++++| .+
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n-~i  105 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AF  105 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CC
T ss_pred             HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc-cc
Confidence            3345666677776665543     2222 4556666666665533211    11      11344566666666666 33


Q ss_pred             CC-----cchhhcCCCCCcEEEccccccc
Q 038551           94 EN-----LPLGIFNLVSLQHLDISWTGIT  117 (366)
Q Consensus        94 ~~-----l~~~~~~l~~L~~L~l~~~~~~  117 (366)
                      +.     +...+...++|++|++++|.+.
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~  134 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLG  134 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             ccccccchhhhhcccccchheeccccccc
Confidence            32     2233344556666666666543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.5e-10  Score=89.53  Aligned_cols=23  Identities=17%  Similarity=0.212  Sum_probs=9.1

Q ss_pred             CccccchhhcCCCCCCEEEccCC
Q 038551           68 LGTVSNNFFHSMASLRVLILSYN   90 (366)
Q Consensus        68 ~~~i~~~~~~~l~~L~~L~l~~~   90 (366)
                      ++.++...|..+++|+.|++++|
T Consensus        44 l~~i~~~~f~~l~~L~~L~Ls~N   66 (156)
T d2ifga3          44 LQHLELRDLRGLGELRNLTIVKS   66 (156)
T ss_dssp             CCEECGGGSCSCCCCSEEECCSS
T ss_pred             ccccCchhhccccccCcceeecc
Confidence            33333333333444444444444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.5e-10  Score=89.51  Aligned_cols=104  Identities=24%  Similarity=0.209  Sum_probs=86.8

Q ss_pred             CccEEEecCCCcccCC-CCCCCCcccEEEcccC-CccccCCC--CCCCCccEEEccCCCCccccchhhcCCCCCCEEEcc
Q 038551           13 KENFLVLAGVGLTEAP-SIGMWKETTRMSLMQN-AIQNLTEI--PTCPRLRTLFLPSNHLGTVSNNFFHSMASLRVLILS   88 (366)
Q Consensus        13 ~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~-~~~~l~~~--~~~~~L~~L~l~~~~~~~i~~~~~~~l~~L~~L~l~   88 (366)
                      ....+.+.++++.++| .+.++++|+.|++.++ .++.++..  ..+++|+.|++++|.++.+++.+|..+++|++|+++
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            4445788888888874 5778899999999866 58887754  789999999999999999998889999999999999


Q ss_pred             CCCCCCCcchhhcCCCCCcEEEccccccc
Q 038551           89 YNRSLENLPLGIFNLVSLQHLDISWTGIT  117 (366)
Q Consensus        89 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~~  117 (366)
                      +| .++.+|........|++|++++|.+.
T Consensus        89 ~N-~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FN-ALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SS-CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CC-CCcccChhhhccccccccccCCCccc
Confidence            99 77788766545557888888888764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.98  E-value=1.1e-09  Score=97.36  Aligned_cols=232  Identities=17%  Similarity=0.159  Sum_probs=153.5

Q ss_pred             CCccEEEecCCCccc-----C-CCCCCCCcccEEEcccCCcccc-----------CCC-CCCCCccEEEccCCCCcccc-
Q 038551           12 EKENFLVLAGVGLTE-----A-PSIGMWKETTRMSLMQNAIQNL-----------TEI-PTCPRLRTLFLPSNHLGTVS-   72 (366)
Q Consensus        12 ~~~~~~~~~~~~~~~-----~-~~~~~~~~L~~L~l~~~~~~~l-----------~~~-~~~~~L~~L~l~~~~~~~i~-   72 (366)
                      ...+.+++.++.+.+     + ..+...+.|+.+++.++.....           ... ..+++|+.|++++|.++... 
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  110 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  110 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccc
Confidence            345567777776633     2 4577789999999987754321           111 57889999999999886421 


Q ss_pred             ---chhhcCCCCCCEEEccCCCCCCCc-----ch---------hhcCCCCCcEEEccccccc-----cccccccCCCCCC
Q 038551           73 ---NNFFHSMASLRVLILSYNRSLENL-----PL---------GIFNLVSLQHLDISWTGIT-----TLPIELKYLVNLK  130 (366)
Q Consensus        73 ---~~~~~~l~~L~~L~l~~~~~~~~l-----~~---------~~~~l~~L~~L~l~~~~~~-----~l~~~l~~l~~L~  130 (366)
                         ...+..+++|+.|++++| .++..     ..         .....+.|+.+.++++.++     .+...+...+.|+
T Consensus       111 ~~l~~~l~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~  189 (344)
T d2ca6a1         111 EPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  189 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             cchhhhhcccccchheecccc-cccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhc
Confidence               122567899999999998 44311     01         1235678999999998775     3444467788999


Q ss_pred             EEEcccccccCc----cChhhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeeccccchh--h
Q 038551          131 CLNLEYTFRLSR----IPQQVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSFGA--L  204 (366)
Q Consensus       131 ~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~  204 (366)
                      .|++++|.....    .....+..+++|++|++++|.++..         +.......+...++|+.|++++|.+..  .
T Consensus       190 ~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~---------g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~  260 (344)
T d2ca6a1         190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL---------GSSALAIALKSWPNLRELGLNDCLLSARGA  260 (344)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH---------HHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             ccccccccccccccccchhhhhcchhhhccccccccccccc---------ccccccccccccccchhhhhhcCccCchhh
Confidence            999999643221    1112256788999999999998751         122455677889999999999998764  3


Q ss_pred             HhHhh-hcccCcccceeeeccccCCCCCcchh----hh-ccCCcCcEEEeccCccc
Q 038551          205 QRLLS-YCRLGSISTQCLCLRHLNNSNSLSVF----AF-ASLRHLRTLQLYFNDLE  254 (366)
Q Consensus       205 ~~l~~-~~~l~~l~l~~L~~~~~~~~~~~~~~----~l-~~~~~L~~L~l~~~~l~  254 (366)
                      ..+.. +.......++.|+++.+. +....+.    .+ .+.+.|++|++++|.+.
T Consensus       261 ~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         261 AAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            33322 222333357778887643 4444332    22 25678999999988765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2e-09  Score=98.90  Aligned_cols=104  Identities=18%  Similarity=0.232  Sum_probs=75.3

Q ss_pred             CcccEEEcccCCcccc--CCC-CCCCCccEEEccCCCCcccc----chhhcCCCCCCEEEccCCCCCCC-----cchhhc
Q 038551           34 KETTRMSLMQNAIQNL--TEI-PTCPRLRTLFLPSNHLGTVS----NNFFHSMASLRVLILSYNRSLEN-----LPLGIF  101 (366)
Q Consensus        34 ~~L~~L~l~~~~~~~l--~~~-~~~~~L~~L~l~~~~~~~i~----~~~~~~l~~L~~L~l~~~~~~~~-----l~~~~~  101 (366)
                      ++|+.|+++++++++.  ... +.++++++|++++|.++...    ..++..+++|++|++++| .++.     +...+.
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTC
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHHHHh
Confidence            4789999999998872  222 67888999999999886321    223678899999999998 4542     222222


Q ss_pred             -CCCCCcEEEcccccccc-----ccccccCCCCCCEEEccccc
Q 038551          102 -NLVSLQHLDISWTGITT-----LPIELKYLVNLKCLNLEYTF  138 (366)
Q Consensus       102 -~l~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~l~~~~  138 (366)
                       ...+|++|++++|.++.     ++..+..+++|++|++++|.
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence             23579999999998863     45557788999999998853

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=2.4e-07  Score=72.51  Aligned_cols=82  Identities=18%  Similarity=0.051  Sum_probs=47.4

Q ss_pred             hcCCCCCCEEEccCCCCCCCc---chhhcCCCCCcEEEcccccccccccc-ccCCCCCCEEEcccccccCccCh------
Q 038551           76 FHSMASLRVLILSYNRSLENL---PLGIFNLVSLQHLDISWTGITTLPIE-LKYLVNLKCLNLEYTFRLSRIPQ------  145 (366)
Q Consensus        76 ~~~l~~L~~L~l~~~~~~~~l---~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~------  145 (366)
                      +..+++|++|++++| .++.+   +..+..+++|++|++++|.++.++.. .....+|+.+++.+|+.......      
T Consensus        61 ~~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          61 EENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HHHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             HHhCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            455677777777777 44443   23355667777777777777766542 22334577777777544332221      


Q ss_pred             hhhcCCcCCcEEE
Q 038551          146 QVISDLKMLRALR  158 (366)
Q Consensus       146 ~~~~~~~~L~~L~  158 (366)
                      .++..+++|+.|+
T Consensus       140 ~i~~~~P~L~~LD  152 (162)
T d1koha1         140 AIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTSTTCCEET
T ss_pred             HHHHHCCCCCEEC
Confidence            2245667777663

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=3.8e-06  Score=65.40  Aligned_cols=80  Identities=20%  Similarity=0.201  Sum_probs=62.5

Q ss_pred             CCCCCccEEEccCCCCccccc--hhhcCCCCCCEEEccCCCCCCCcch-hhcCCCCCcEEEcccccccccc--------c
Q 038551           53 PTCPRLRTLFLPSNHLGTVSN--NFFHSMASLRVLILSYNRSLENLPL-GIFNLVSLQHLDISWTGITTLP--------I  121 (366)
Q Consensus        53 ~~~~~L~~L~l~~~~~~~i~~--~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~l~--------~  121 (366)
                      ..++.|++|++++|.++.+++  ..+..+++|+.|++++| .++.+++ ......+|+.|++.+|.+....        .
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            578999999999999987653  34678999999999999 7777664 2334567999999999886432        2


Q ss_pred             cccCCCCCCEEE
Q 038551          122 ELKYLVNLKCLN  133 (366)
Q Consensus       122 ~l~~l~~L~~L~  133 (366)
                      .+..+|+|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            357889999997

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.49  E-value=0.0001  Score=57.31  Aligned_cols=116  Identities=14%  Similarity=0.066  Sum_probs=54.1

Q ss_pred             CCCCCCEEEccCCCCCCC-----cchhhcCCCCCcEEEccccccc-----cccccccCCCCCCEEEcccccccCccC-h-
Q 038551           78 SMASLRVLILSYNRSLEN-----LPLGIFNLVSLQHLDISWTGIT-----TLPIELKYLVNLKCLNLEYTFRLSRIP-Q-  145 (366)
Q Consensus        78 ~l~~L~~L~l~~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~-----~l~~~l~~l~~L~~L~l~~~~~~~~~~-~-  145 (366)
                      +.++|++|+++++..++.     +...+...+.|++|++++|.++     .+...+...+.|++|++++|. ++... . 
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~~g~~~   91 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLAR   91 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh-cchHHHHH
Confidence            345555555554322221     1223344455566666555554     222234445566666666642 22211 1 


Q ss_pred             --hhhcCCcCCcEEEeecCCccccccccccccCCchhhhhhhhcCcccceeeecccc
Q 038551          146 --QVISDLKMLRALRMFECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQS  200 (366)
Q Consensus       146 --~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  200 (366)
                        ..+...++|++|++.+|......      ......+...+...+.|..|++..+.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g------~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLG------NQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCC------HHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCcc------HHHHHHHHHHHHhCCCccEeeCcCCC
Confidence              11345566777777665433100      00012345555666677777665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.37  E-value=0.00028  Score=54.65  Aligned_cols=107  Identities=12%  Similarity=0.040  Sum_probs=61.0

Q ss_pred             CCCCccEEEccCC-CCcc-----ccchhhcCCCCCCEEEccCCCCCC-----CcchhhcCCCCCcEEEccccccc-----
Q 038551           54 TCPRLRTLFLPSN-HLGT-----VSNNFFHSMASLRVLILSYNRSLE-----NLPLGIFNLVSLQHLDISWTGIT-----  117 (366)
Q Consensus        54 ~~~~L~~L~l~~~-~~~~-----i~~~~~~~l~~L~~L~l~~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~-----  117 (366)
                      ..+.|+.|+++++ .++.     +- ..+...+.|+.|++++| .++     .+...+...+.|++|++++|.++     
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~-~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~   90 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLI-EAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLA   90 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHH-HHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHH-HHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehhhcchHHHH
Confidence            4456666666653 3431     11 12455666777777776 333     22334455567777777777665     


Q ss_pred             cccccccCCCCCCEEEcccccccCccC-------hhhhcCCcCCcEEEeecCC
Q 038551          118 TLPIELKYLVNLKCLNLEYTFRLSRIP-------QQVISDLKMLRALRMFECG  163 (366)
Q Consensus       118 ~l~~~l~~l~~L~~L~l~~~~~~~~~~-------~~~~~~~~~L~~L~l~~~~  163 (366)
                      .+-..+...++|++|++.++ ....+.       ...+...++|++|++..+.
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n-~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQ-RQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCC-SSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHhCCcCCEEECCCC-cCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            23344666777888888763 222221       1124456788888876654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.20  E-value=0.00023  Score=55.02  Aligned_cols=116  Identities=16%  Similarity=0.036  Sum_probs=59.5

Q ss_pred             cCCCCCCEEEccCCCCCC-----CcchhhcCCCCCcEEEccccccc-----cccccccCCCCCCEEEcccccccCccCh-
Q 038551           77 HSMASLRVLILSYNRSLE-----NLPLGIFNLVSLQHLDISWTGIT-----TLPIELKYLVNLKCLNLEYTFRLSRIPQ-  145 (366)
Q Consensus        77 ~~l~~L~~L~l~~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~-----~l~~~l~~l~~L~~L~l~~~~~~~~~~~-  145 (366)
                      .+.+.|++|+++++..++     .+..++...++|++|++++|.++     .+...+...++++.+++.+|........ 
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            345566666665532232     12233445566666666666554     2333345556677777766433222111 


Q ss_pred             --hhhcCCcCCcEEEee--cCCccccccccccccCCchhhhhhhhcCcccceeeeccccc
Q 038551          146 --QVISDLKMLRALRMF--ECGFNVELEADSILFGDSEVLVEELLVLKHLNLLTITLQSF  201 (366)
Q Consensus       146 --~~~~~~~~L~~L~l~--~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  201 (366)
                        ..+...++|+.+++.  +|.+.+.         ........+...+.|++|++..+..
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~---------~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNN---------VEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHH---------HHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHH---------HHHHHHHHHHhCCCcCEEeCcCCCC
Confidence              114456667766554  3444431         1224455666677777777765543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.88  E-value=0.00098  Score=51.30  Aligned_cols=111  Identities=12%  Similarity=0.059  Sum_probs=62.0

Q ss_pred             CCCCCccEEEccCC-CCcc--c--cchhhcCCCCCCEEEccCCCCCCC-----cchhhcCCCCCcEEEccccccc-----
Q 038551           53 PTCPRLRTLFLPSN-HLGT--V--SNNFFHSMASLRVLILSYNRSLEN-----LPLGIFNLVSLQHLDISWTGIT-----  117 (366)
Q Consensus        53 ~~~~~L~~L~l~~~-~~~~--i--~~~~~~~l~~L~~L~l~~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~-----  117 (366)
                      ...+.|+.|+++++ .++.  +  -..++...++|++|++++| .++.     +...+...+.++.+++.++.++     
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            34566666666653 4431  1  1112445667777777777 4431     2233455667777777777664     


Q ss_pred             cccccccCCCCCCEEEcccc-cccCccC----hhhhcCCcCCcEEEeecCCc
Q 038551          118 TLPIELKYLVNLKCLNLEYT-FRLSRIP----QQVISDLKMLRALRMFECGF  164 (366)
Q Consensus       118 ~l~~~l~~l~~L~~L~l~~~-~~~~~~~----~~~~~~~~~L~~L~l~~~~~  164 (366)
                      .+...+...++|+.+++..+ +.++.-.    ...+...+.|++|++..+..
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            34445667777887666532 2333211    11245677888888866543