Citrus Sinensis ID: 038559

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
Protein Sequence
VSHLSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLLDEHKERLKPYGGEENYKIRHIPQTPGRGYSRVDGR
Secondary Structure (PSIPRED)
ccccccccHHHHccccccccEEEcccccccccccccccccccccHHHHHHccccccEEEEEEccccccccEEEEccccccccccccccccccccEEEEccccHHHHHHHcccccccccccccccEEEEccEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHccccEEEEEEcccccccccEEEEccccccccEEEEEcccHHHcEEEEEccccccccEEEEcccHHHHHccHHHHHHHHHHEEEEccccHHHHHHHccccccccEEEEEccEEEEEEEEccccc
Coil and Loop (DISEMBL)
VSHLSENSALVIQLLPNLKTLTLWLASKAKQLEKEfcsvggfhkLEILIIAFHVLEewteieegalpslkylqLHKCLKLRMLLEDLQFVATLKQlqilplldehkerlkpyggeenykirhipqtpgrgysrvdgr
Flexible Loop (DISEMBL)
VSHLSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLLDEHKERLKpyggeenykirhipqtpgrgysrvdgr
Low Complexity Region (SEG)
VSHLSENSALVIQllpnlktltlwlASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLLDEHKERLKPYGGEENYKIRHIPQTPGRGYSRVDGR
Disordered region (IsUnstruct)
********ALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLLDEHKE******************************
Disordered Region (DISOPRED)
VSHLSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLLDEHKERLKPYGGEENYKIRHIPQTPGRGYSR****
Disordered Region (DISEMBL)
VSHLSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLLDEHKERLKPYGGEENYKIRHIPQTP**********
Disordered Region (DISPRO)
**HLSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLLDEHKERLKPYGGEENYKIRHIPQTPGRGYSR****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VSHLSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLLDEHKERLKPYGGEENYKIRHIPQTPGRGYSRVDGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	137	2.2.26 [Sep-21-2011]
Q8W4J9	908	Disease resistance protei	yes	no	0.868	0.131	0.379	4e-13
Q9FJK8	908	Probable disease resistan	no	no	0.868	0.131	0.370	5e-13
P59584	910	Disease resistance protei	no	no	0.868	0.130	0.370	2e-12
Q9FJB5	901	Disease resistance RPP8-l	no	no	0.861	0.130	0.384	8e-12
P0C8S1	906	Probable disease resistan	no	no	0.868	0.131	0.362	3e-11
P0DI16	1017	Probable disease resistan	no	no	0.613	0.082	0.456	7e-11
F4IBE4	1017	Probable disease resistan	no	no	0.613	0.082	0.456	7e-11
Q9XIF0	906	Putative disease resistan	no	no	0.839	0.126	0.330	1e-09
Q8W3K3	910	Putative disease resistan	no	no	0.846	0.127	0.355	1e-07
Q8W474	907	Probable disease resistan	no	no	0.846	0.127	0.314	5e-07

>sp|Q8W4J9|RPP8_ARATH Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 78/124 (62%), Gaps = 5/124 (4%)

Query: 4   LSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHV-LEEWTEIE 62
           + E+   +++ L +LK++ L  A KA    +  CS GGF +L ++ I+    LEEW  +E
Sbjct: 782 MEEDPMPILEKLLHLKSVRL--ARKAFLGSRMVCSKGGFPQLCVIEISKESELEEWI-VE 838

Query: 63  EGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLLDEHKERLKPYGGEENYKIRH 122
           EG++P L+ L +  C KL+ L + L+++ +LK+L+I  +  E KE+L P GGE+ YK++H
Sbjct: 839 EGSMPCLRTLTIDDCKKLKELPDGLKYITSLKELKIEGMKREWKEKLVP-GGEDYYKVQH 897

Query: 123 IPQT 126
           IP  
Sbjct: 898 IPDV 901

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. The interaction with TIP (TCV-interacting protein) may be essential for the recognition of the avirulence proteins, and the triggering of the defense response.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJK8|RP8L4_ARATH Probable disease resistance RPP8-like protein 4 OS=Arabidopsis thaliana GN=RPP8L4 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 77/124 (62%), Gaps = 5/124 (4%)

Query: 4   LSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHV-LEEWTEIE 62
           + E+   +++ L +LK++ L   +   +  +  CS GGF +L  L I+    LEEW  +E
Sbjct: 782 MKEDPMPILEKLLHLKSVALSYGAFIGR--RVVCSKGGFPQLCALGISGESELEEWI-VE 838

Query: 63  EGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLLDEHKERLKPYGGEENYKIRH 122
           EG++P L+ L +H C KL+ L + L+++ +LK+L+I  +  E KE+L P GGE+ YK++H
Sbjct: 839 EGSMPCLRTLTIHDCEKLKELPDGLKYITSLKELKIREMKREWKEKLVP-GGEDYYKVQH 897

Query: 123 IPQT 126
           IP  
Sbjct: 898 IPDV 901

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P59584|RP8HA_ARATH Disease resistance protein RPH8A OS=Arabidopsis thaliana GN=RPH8A PE=3 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 76/124 (61%), Gaps = 5/124 (4%)

Query: 4   LSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHV-LEEWTEIE 62
           + E+   +++ L +LK++ L    KA    +  CS  GF +L  L I+    LE+W  +E
Sbjct: 784 MEEDPMPILEKLHHLKSVQL--RYKAFVGRRMVCSKDGFTQLCALDISKQSELEDWI-VE 840

Query: 63  EGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLLDEHKERLKPYGGEENYKIRH 122
           EG++P L+ L +H C KL+ L + L+++ +LK+L+I  +  E KE+L P GGE+ YK++H
Sbjct: 841 EGSMPCLRTLTIHDCEKLKELPDGLKYITSLKELKIEGMKREWKEKLVP-GGEDYYKVQH 899

Query: 123 IPQT 126
           IP  
Sbjct: 900 IPDV 903

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to RPP8, it does not specifically recognize the Emco5 avirulence protein from Hyaloperonospora parasitica.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJB5|RP8L3_ARATH Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 75/125 (60%), Gaps = 7/125 (5%)

Query: 3   HLSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHV-LEEWTEI 61
           H+ E+   +++ L +LK++ L    KA    +  CS GGF +L  L I+    LEEW  +
Sbjct: 772 HMEEDPMPILEKLLHLKSVEL--RRKAFIGRRMVCSKGGFPQLRALQISEQSELEEWI-V 828

Query: 62  EEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLLDEHKERLKPYGGEENYKIR 121
           EEG++P L+ L +H C KL  L + L++V +LK+L+I  +  E KE+L    GE+ YK++
Sbjct: 829 EEGSMPCLRDLIIHSCEKLEELPDGLKYVTSLKELKIEGMKREWKEKLV---GEDYYKVQ 885

Query: 122 HIPQT 126
           HIP  
Sbjct: 886 HIPDV 890

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0C8S1|RP8L2_ARATH Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=1 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 75/124 (60%), Gaps = 5/124 (4%)

Query: 4   LSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHV-LEEWTEIE 62
           + E+   +++ L +LK++  +L+S A    +  CS GGF +L  L +++   L EW  +E
Sbjct: 780 MEEDPMPILEKLLHLKSV--YLSSGAFLGRRMVCSKGGFPQLLALKMSYKKELVEW-RVE 836

Query: 63  EGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLLDEHKERLKPYGGEENYKIRH 122
           EG++P L+ L +  C KL+ L + L++V  LK+L+I  +  E  ERL   GGE+ YK++H
Sbjct: 837 EGSMPCLRTLTIDNCKKLKQLPDGLKYVTCLKELKIERMKREWTERL-VIGGEDYYKVQH 895

Query: 123 IPQT 126
           IP  
Sbjct: 896 IPSV 899

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI16|DRL44_ARATH Probable disease resistance protein RDL5 OS=Arabidopsis thaliana GN=RDL5 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 58/92 (63%), Gaps = 8/92 (8%)

Query: 37  CSVGGFHKLEILIIAFHVLEEWTE--IEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLK 94
           CS GGF +L+ L I  + LEEW E  +E+G++P L  L +  C KL+ L + LQF+ +LK
Sbjct: 908 CSGGGFPQLQKLSI--YRLEEWEEWIVEQGSMPFLHTLYIDDCPKLKKLPDGLQFIYSLK 965

Query: 95  QLQILPLLDEHKERLKPYGGEENYKIRHIPQT 126
            L+I    +  KERL   GGEE YK++HIP  
Sbjct: 966 NLKI---SERWKERLSE-GGEEYYKVQHIPSV 993

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|F4IBE4|DRL10_ARATH Probable disease resistance protein RF45 OS=Arabidopsis thaliana GN=RF45 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 58/92 (63%), Gaps = 8/92 (8%)

Query: 37  CSVGGFHKLEILIIAFHVLEEWTE--IEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLK 94
           CS GGF +L+ L I  + LEEW E  +E+G++P L  L +  C KL+ L + LQF+ +LK
Sbjct: 908 CSGGGFPQLQKLSI--YRLEEWEEWIVEQGSMPFLHTLYIDDCPKLKKLPDGLQFIYSLK 965

Query: 95  QLQILPLLDEHKERLKPYGGEENYKIRHIPQT 126
            L+I    +  KERL   GGEE YK++HIP  
Sbjct: 966 NLKI---SERWKERLSE-GGEEYYKVQHIPSV 993

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIF0|DRL13_ARATH Putative disease resistance protein At1g59780 OS=Arabidopsis thaliana GN=At1g59780 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 71/124 (57%), Gaps = 9/124 (7%)

Query: 4   LSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGF---HKLEILIIAFHVLEEWTE 60
           L E+    ++ L  LK ++LW  +   +  +  C+ GGF   H+LEI       LEEW  
Sbjct: 765 LEEDPMPTLEKLLQLKVVSLWYNAYVGR--RMVCTGGGFPPLHRLEIW--GLDALEEWI- 819

Query: 61  IEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLLDEHKERLKPYGGEENYKI 120
           +EEG++P L  L +  C KL+ + + L+F+++LK+L I       ++++   GGE+ YK+
Sbjct: 820 VEEGSMPLLHTLHIVDCKKLKEIPDGLRFISSLKELAIRTNEKVFQKKVSK-GGEDYYKM 878

Query: 121 RHIP 124
           +H+P
Sbjct: 879 QHVP 882

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W3K3|DRL8_ARATH Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 22/138 (15%)

Query: 2   SHLS----ENSALVIQLLPNLKTLTLWLASKAKQLE-KEFC------SVGGFHKLEILII 50
           SHL+    +   LV   LP L+ L   L  K  +L+ + FC      S GGF +L  L I
Sbjct: 775 SHLTSISLDGCCLVEDPLPILEKL---LELKEVRLDFRAFCGKRMVSSDGGFPQLHRLYI 831

Query: 51  AFHVLEEWTE--IEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLLDEHKER 108
               L EW E  +EEG++P L  L +  C KL+ L + L+F+ ++K L     +D+  + 
Sbjct: 832 W--GLAEWEEWIVEEGSMPRLHTLTIWNCQKLKQLPDGLRFIYSIKDLD----MDKKWKE 885

Query: 109 LKPYGGEENYKIRHIPQT 126
           +   GGEE YK++HIP  
Sbjct: 886 ILSEGGEEYYKVQHIPSV 903

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W474|DRL7_ARATH Probable disease resistance protein At1g58390 OS=Arabidopsis thaliana GN=At1g58390 PE=2 SV=4

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 70/124 (56%), Gaps = 8/124 (6%)

Query: 4   LSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEIL-IIAFHVLEEWTEIE 62
           L E+   +++ L +LK + L   S   +  +  CS GGF +L+ L I+  +  EEW  +E
Sbjct: 783 LEEDPMPILEKLLHLKGVILLKGSYCGR--RMVCSGGGFPQLKKLEIVGLNKWEEWL-VE 839

Query: 63  EGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLLDEHKERLKPYGGEENYKIRH 122
           EG++P L+ L +  C +L+ + + L+F+ +L+    L +L    ++    GGE+ YK++H
Sbjct: 840 EGSMPLLETLSILDCEELKEIPDGLRFIYSLE----LVMLGTRWKKKFSVGGEDYYKVQH 895

Query: 123 IPQT 126
           IP  
Sbjct: 896 IPSV 899

Possible disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
224119404	583	predicted protein [Populus trichocarpa]	0.905	0.212	0.693	3e-38
255540551	685	Disease resistance protein RPP13, putati	0.890	0.178	0.713	3e-35
359495918	466	PREDICTED: putative disease resistance p	0.912	0.268	0.6	4e-34
147834108	653	hypothetical protein VITISV_003708 [Viti	0.912	0.191	0.704	3e-33
225456928	653	PREDICTED: putative disease resistance p	0.912	0.191	0.704	1e-32
359488817	590	PREDICTED: disease resistance protein RP	0.948	0.220	0.507	7e-28
359488815	685	PREDICTED: disease resistance protein RP	0.927	0.185	0.532	2e-26
359488813	690	PREDICTED: disease resistance protein RP	0.897	0.178	0.520	4e-26
224107801	533	predicted protein [Populus trichocarpa]	0.905	0.232	0.519	7e-26
296087621	402	unnamed protein product [Vitis vinifera]	0.875	0.298	0.555	1e-25

>gi|224119404|ref|XP_002318063.1| predicted protein [Populus trichocarpa] gi|222858736|gb|EEE96283.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/124 (69%), Positives = 100/124 (80%)

Query: 2   SHLSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEI 61
           SHLSEN  LV+Q+LPNL+ LTLW A   +QL K+FC  GGF KLE+LIIA  VLEEWTE+
Sbjct: 432 SHLSENPTLVLQVLPNLEKLTLWHAYDGRQLGKDFCKPGGFPKLEVLIIASRVLEEWTEL 491

Query: 62  EEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLLDEHKERLKPYGGEENYKIR 121
           EEGALP LKYL  H CL LRML E LQFV T+++L +LPLLDEH+ERLKP GG ENYKIR
Sbjct: 492 EEGALPRLKYLHFHNCLNLRMLPEGLQFVTTVEELVLLPLLDEHEERLKPDGGLENYKIR 551

Query: 122 HIPQ 125
           +IP+
Sbjct: 552 NIPK 555

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540551|ref|XP_002511340.1| Disease resistance protein RPP13, putative [Ricinus communis] gi|223550455|gb|EEF51942.1| Disease resistance protein RPP13, putative [Ricinus communis]

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 87/122 (71%), Positives = 97/122 (79%)

Query: 2   SHLSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEI 61
           SHLSE   LV+Q+LPNLK LTLW A   KQL KEFC  GGF KLE+L IA +VLEEWTE+
Sbjct: 537 SHLSEIPMLVLQILPNLKILTLWHAYDTKQLGKEFCKAGGFPKLEVLRIASYVLEEWTEL 596

Query: 62  EEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLLDEHKERLKPYGGEENYKIR 121
           EEGALPSL+ L  H C  LR+L E LQ+V TLKQL++LPLLDEH ERLKP GGEENYKIR
Sbjct: 597 EEGALPSLQCLHFHNCSSLRILPEGLQYVTTLKQLKLLPLLDEHAERLKPDGGEENYKIR 656

Query: 122 HI 123
           HI
Sbjct: 657 HI 658

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495918|ref|XP_003635114.1| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera]

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 75/125 (60%), Positives = 91/125 (72%)

Query: 2   SHLSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEI 61
           SHL EN   V+Q LPNLK LTLW A  AKQ+ KEFC VGGF KLE+L+IA + L EWTEI
Sbjct: 338 SHLFENPNAVLQFLPNLKQLTLWQAYNAKQIGKEFCPVGGFPKLEVLVIASNNLVEWTEI 397

Query: 62  EEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLLDEHKERLKPYGGEENYKIR 121
           E+GALPSLKYL  H C +L +L E LQ+V TL++L + PL  +H  RL P  G E+YKI+
Sbjct: 398 EKGALPSLKYLHFHCCSRLMILPEGLQYVTTLQKLSLFPLHGDHARRLDPERGIEHYKIK 457

Query: 122 HIPQT 126
           HIP+ 
Sbjct: 458 HIPEV 462

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834108|emb|CAN62186.1| hypothetical protein VITISV_003708 [Vitis vinifera]

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/125 (70%), Positives = 101/125 (80%)

Query: 2   SHLSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEI 61
           SHLSEN   V+QLLPNLK LTLW A +AK + KEFC  GGF KLE L IA HVLEEWTE+
Sbjct: 509 SHLSENPTSVLQLLPNLKILTLWQAFEAKHIGKEFCRAGGFPKLEDLTIASHVLEEWTEL 568

Query: 62  EEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLLDEHKERLKPYGGEENYKIR 121
           EEGA+PSLK+L L  CL+LR L E LQF+ TLKQL +LPLLD+H+ERL+P GGEENYKI+
Sbjct: 569 EEGAIPSLKFLXLRNCLRLRTLPEGLQFITTLKQLSLLPLLDDHEERLRPDGGEENYKIK 628

Query: 122 HIPQT 126
           HIPQ 
Sbjct: 629 HIPQV 633

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456928|ref|XP_002278135.1| PREDICTED: putative disease resistance protein At1g58400-like [Vitis vinifera]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/125 (70%), Positives = 102/125 (81%)

Query: 2   SHLSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEI 61
           SHLSEN   V+QLLPNLK LTLW A +AK + KEFC  GGF KLE L IA HVLEEWTE+
Sbjct: 509 SHLSENPTSVLQLLPNLKILTLWQAFEAKHIGKEFCRAGGFPKLEDLTIASHVLEEWTEL 568

Query: 62  EEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLLDEHKERLKPYGGEENYKIR 121
           EEGA+PSLK+L+L  CL+LR L E LQF+ TLKQL +LPLLD+H+ERL+P GGEENYKI+
Sbjct: 569 EEGAIPSLKFLRLRNCLRLRTLPEGLQFITTLKQLSLLPLLDDHEERLRPDGGEENYKIK 628

Query: 122 HIPQT 126
           HIPQ 
Sbjct: 629 HIPQV 633

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488817|ref|XP_003633827.1| PREDICTED: disease resistance protein RPM1-like [Vitis vinifera]

 Score =  128 bits (322), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 66/130 (50%), Positives = 89/130 (68%)

Query: 2   SHLSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEI 61
           SHLSEN   ++Q LPNLK L+++ A K K++ +EF   GGF KLE L I  H L EWTE+
Sbjct: 458 SHLSENPTTILQFLPNLKYLSMFHAYKGKRMGREFFRAGGFPKLEYLKIVSHNLVEWTEM 517

Query: 62  EEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLLDEHKERLKPYGGEENYKIR 121
           EEGALP LK L    C++L  L E LQ+VATL++L +L + ++   RL P GG++NYKI+
Sbjct: 518 EEGALPCLKQLYFWNCMRLMGLPEGLQYVATLQKLALLNVHEDLIRRLSPNGGQDNYKIK 577

Query: 122 HIPQTPGRGY 131
           HIP+    G+
Sbjct: 578 HIPRVSYFGH 587

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488815|ref|XP_003633826.1| PREDICTED: disease resistance protein RPM1-like [Vitis vinifera]

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/139 (53%), Positives = 87/139 (62%), Gaps = 12/139 (8%)

Query: 2   SHLSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEI 61
           SHLSEN   ++Q LPNLK L +  A K K++E EF   GGF KLE L IA   L EWTEI
Sbjct: 547 SHLSENPTTILQFLPNLKYLLMGGAYKGKRMEIEFFRAGGFPKLEYLTIASDDLVEWTEI 606

Query: 62  EEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLLDEHKE---RLKPYGGEENY 118
           EEGALPSLK L+   C +L +L E LQ V T   LQIL L + H++   RL P GG ENY
Sbjct: 607 EEGALPSLKQLRFSNCTRLMVLPEGLQHVTT---LQILDLWNVHEDLIRRLSPNGGPENY 663

Query: 119 KIRHIP------QTPGRGY 131
           KI+HIP      Q   RG+
Sbjct: 664 KIKHIPVVKYLGQMMSRGF 682

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488813|ref|XP_003633825.1| PREDICTED: disease resistance protein RPM1-like [Vitis vinifera]

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 64/123 (52%), Positives = 82/123 (66%)

Query: 2   SHLSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEI 61
           SHLSEN   ++Q LPNLK L+++ A K K++E+EF   GGF KLE L I    L EWTE+
Sbjct: 521 SHLSENPTTILQFLPNLKYLSMFHAYKGKRMEREFFRAGGFPKLEYLKIVSRNLVEWTEM 580

Query: 62  EEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLLDEHKERLKPYGGEENYKIR 121
           EEGALP LK L    C++L  L E LQ VATL++L +  +  +   RL P GG +NYKI+
Sbjct: 581 EEGALPCLKQLYFWNCMRLMGLPEGLQHVATLQKLVLFNVHGDLTRRLNPNGGPQNYKIK 640

Query: 122 HIP 124
           HIP
Sbjct: 641 HIP 643

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107801|ref|XP_002314605.1| predicted protein [Populus trichocarpa] gi|222863645|gb|EEF00776.1| predicted protein [Populus trichocarpa]

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 66/127 (51%), Positives = 79/127 (62%), Gaps = 3/127 (2%)

Query: 2   SHLSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEI 61
           S+LSEN   V+QLLP LK L LW A KA+ + KEFC+ GGF  LE L IA   L EWTEI
Sbjct: 406 SYLSENPTSVLQLLPKLKHLQLWEAYKARHIGKEFCNAGGFPVLETLTIASEFLAEWTEI 465

Query: 62  EEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLLDEHKERLKPYGGEENYKIR 121
           E GA P L+YL   +C  L  L E LQ ++TL+ L   P   + K RL    GEENYKI+
Sbjct: 466 ETGAFPRLRYLCFRRCRNLIFLPEGLQNISTLQDLCFFPWNPDLKRRLM---GEENYKIK 522

Query: 122 HIPQTPG 128
           H+P   G
Sbjct: 523 HVPNIRG 529

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087621|emb|CBI34877.3| unnamed protein product [Vitis vinifera]

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/126 (55%), Positives = 83/126 (65%), Gaps = 6/126 (4%)

Query: 2   SHLSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEI 61
           SHLSEN   ++Q LP+LK L +  A K K++E EF   GGF KLE L IA   L EWTEI
Sbjct: 239 SHLSENPTTILQFLPDLKYLLMERAYKGKRMEIEFFRAGGFPKLEYLTIASDDLVEWTEI 298

Query: 62  EEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLLDEHKE---RLKPYGGEENY 118
           EEGALPSLK L    C++L +L E LQ V T   LQIL L + H++   RL P GG ENY
Sbjct: 299 EEGALPSLKQLCFSNCMRLMVLPEGLQHVTT---LQILDLWNVHEDLIRRLSPNGGPENY 355

Query: 119 KIRHIP 124
           KI+HIP
Sbjct: 356 KIKHIP 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
TAIR|locus:2152536	908	AT5G48620 [Arabidopsis thalian	0.627	0.094	0.460	1.7e-13
TAIR|locus:2176486	908	RPP8 "RECOGNITION OF PERONOSPO	0.708	0.106	0.42	5.9e-13
TAIR|locus:504956184	1017	AT1G58807 "AT1G58807" [Arabido	0.656	0.088	0.45	8e-12
TAIR|locus:2827038	1017	AT1G59124 "AT1G59124" [Arabido	0.656	0.088	0.45	8e-12
TAIR|locus:2169523	901	AT5G35450 [Arabidopsis thalian	0.613	0.093	0.449	1.1e-11
TAIR|locus:2025916	906	AT1G59780 "AT1G59780" [Arabido	0.613	0.092	0.373	4.1e-09
TAIR|locus:504956182	1049	AT1G58848 [Arabidopsis thalian	0.569	0.074	0.406	2.2e-08
TAIR|locus:2826978	1049	AT1G59218 [Arabidopsis thalian	0.569	0.074	0.406	2.2e-08
TAIR|locus:504956186	1138	AT1G58602 [Arabidopsis thalian	0.605	0.072	0.397	3.9e-08
TAIR|locus:2037639	907	AT1G58390 "AT1G58390" [Arabido	0.605	0.091	0.359	6.2e-08

TAIR|locus:2152536 AT5G48620 [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 1.7e-13, P = 1.7e-13
 Identities = 41/89 (46%), Positives = 61/89 (68%)

Query:    37 CSVGGFHKLEILIIAFHV-LEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQ 95
             CS GGF +L  L I+    LEEW  +EEG++P L+ L +H C KL+ L + L+++ +LK+
Sbjct:   813 CSKGGFPQLCALGISGESELEEWI-VEEGSMPCLRTLTIHDCEKLKELPDGLKYITSLKE 871

Query:    96 LQILPLLDEHKERLKPYGGEENYKIRHIP 124
             L+I  +  E KE+L P GGE+ YK++HIP
Sbjct:   872 LKIREMKREWKEKLVP-GGEDYYKVQHIP 899

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 5.9e-13, P = 5.9e-13
 Identities = 42/100 (42%), Positives = 65/100 (65%)

Query:    26 ASKAKQLEKEFCSVGGFHKLEILIIAFHV-LEEWTEIEEGALPSLKYLQLHKCLKLRMLL 84
             A KA    +  CS GGF +L ++ I+    LEEW  +EEG++P L+ L +  C KL+ L 
Sbjct:   802 ARKAFLGSRMVCSKGGFPQLCVIEISKESELEEWI-VEEGSMPCLRTLTIDDCKKLKELP 860

Query:    85 EDLQFVATLKQLQILPLLDEHKERLKPYGGEENYKIRHIP 124
             + L+++ +LK+L+I  +  E KE+L P GGE+ YK++HIP
Sbjct:   861 DGLKYITSLKELKIEGMKREWKEKLVP-GGEDYYKVQHIP 899

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051707 "response to other organism" evidence=IMP

TAIR|locus:504956184 AT1G58807 "AT1G58807" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 8.0e-12, P = 8.0e-12
 Identities = 45/100 (45%), Positives = 61/100 (61%)

Query:    37 CSVGGFHKLEILIIAFHVLEEWTE--IEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLK 94
             CS GGF +L+ L I  + LEEW E  +E+G++P L  L +  C KL+ L + LQF+ +LK
Sbjct:   908 CSGGGFPQLQKLSI--YRLEEWEEWIVEQGSMPFLHTLYIDDCPKLKKLPDGLQFIYSLK 965

Query:    95 QLQILPLLDEHKERLKPYGGEENYKIRHIPQTPGRGYSRV 134
              L+I    +  KERL   GGEE YK++HIP      Y RV
Sbjct:   966 NLKIS---ERWKERLSE-GGEEYYKVQHIPSV--EFYHRV 999

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827038 AT1G59124 "AT1G59124" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 8.0e-12, P = 8.0e-12
 Identities = 45/100 (45%), Positives = 61/100 (61%)

Query:    37 CSVGGFHKLEILIIAFHVLEEWTE--IEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLK 94
             CS GGF +L+ L I  + LEEW E  +E+G++P L  L +  C KL+ L + LQF+ +LK
Sbjct:   908 CSGGGFPQLQKLSI--YRLEEWEEWIVEQGSMPFLHTLYIDDCPKLKKLPDGLQFIYSLK 965

Query:    95 QLQILPLLDEHKERLKPYGGEENYKIRHIPQTPGRGYSRV 134
              L+I    +  KERL   GGEE YK++HIP      Y RV
Sbjct:   966 NLKIS---ERWKERLSE-GGEEYYKVQHIPSV--EFYHRV 999

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 40/89 (44%), Positives = 58/89 (65%)

Query:    37 CSVGGFHKLEILIIAFHV-LEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQ 95
             CS GGF +L  L I+    LEEW  +EEG++P L+ L +H C KL  L + L++V +LK+
Sbjct:   804 CSKGGFPQLRALQISEQSELEEWI-VEEGSMPCLRDLIIHSCEKLEELPDGLKYVTSLKE 862

Query:    96 LQILPLLDEHKERLKPYGGEENYKIRHIP 124
             L+I  +  E KE+L    GE+ YK++HIP
Sbjct:   863 LKIEGMKREWKEKLV---GEDYYKVQHIP 888

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2025916 AT1G59780 "AT1G59780" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 4.1e-09, P = 4.1e-09
 Identities = 34/91 (37%), Positives = 56/91 (61%)

Query:    37 CSVGGF---HKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATL 93
             C+ GGF   H+LEI       LEEW  +EEG++P L  L +  C KL+ + + L+F+++L
Sbjct:   796 CTGGGFPPLHRLEIW--GLDALEEWI-VEEGSMPLLHTLHIVDCKKLKEIPDGLRFISSL 852

Query:    94 KQLQILPLLDEHKERLKPYGGEENYKIRHIP 124
             K+L I       ++++   GGE+ YK++H+P
Sbjct:   853 KELAIRTNEKVFQKKVSK-GGEDYYKMQHVP 882

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 35/86 (40%), Positives = 55/86 (63%)

Query:    41 GFHKLEILIIAFHVLEEWTE--IEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQI 98
             GF +L+ L +  + LEEW E  +E+G++P L  L++  C KL+ L + L+F+ +LK L +
Sbjct:   965 GFPQLQNLEL--NELEEWEEWIVEDGSMPLLHTLRIWNCPKLKQLPDGLRFIYSLKNLTV 1022

Query:    99 LPLLDEHKERLKPYGGEENYKIRHIP 124
              P     K+RL   GGE+ YK++HIP
Sbjct:  1023 -P--KRWKKRLSK-GGEDYYKVQHIP 1044

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2826978 AT1G59218 [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 35/86 (40%), Positives = 55/86 (63%)

Query:    41 GFHKLEILIIAFHVLEEWTE--IEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQI 98
             GF +L+ L +  + LEEW E  +E+G++P L  L++  C KL+ L + L+F+ +LK L +
Sbjct:   965 GFPQLQNLEL--NELEEWEEWIVEDGSMPLLHTLRIWNCPKLKQLPDGLRFIYSLKNLTV 1022

Query:    99 LPLLDEHKERLKPYGGEENYKIRHIP 124
              P     K+RL   GGE+ YK++HIP
Sbjct:  1023 -P--KRWKKRLSK-GGEDYYKVQHIP 1044

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956186 AT1G58602 [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 35/88 (39%), Positives = 52/88 (59%)

Query:    37 CSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQL 96
             CS GGF +L+ L I     EEW  +E+G++P L  L +  C  L+ L + L+F+ +LK L
Sbjct:  1050 CSGGGFPQLQKLSIREIEWEEWI-VEQGSMPLLHTLYIGVCPNLKELPDGLRFIYSLKNL 1108

Query:    97 QILPLLDEHKERLKPYGGEENYKIRHIP 124
              +       K+RL   GGE+ YK++HIP
Sbjct:  1109 IVSK---RWKKRLSE-GGEDYYKVQHIP 1132

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2037639 AT1G58390 "AT1G58390" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 6.2e-08, P = 6.2e-08
 Identities = 32/89 (35%), Positives = 55/89 (61%)

Query:    37 CSVGGFHKLEIL-IIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQ 95
             CS GGF +L+ L I+  +  EEW  +EEG++P L+ L +  C +L+ + + L+F+ +L+ 
Sbjct:   814 CSGGGFPQLKKLEIVGLNKWEEWL-VEEGSMPLLETLSILDCEELKEIPDGLRFIYSLE- 871

Query:    96 LQILPLLDEHKERLKPYGGEENYKIRHIP 124
                L +L    ++    GGE+ YK++HIP
Sbjct:   872 ---LVMLGTRWKKKFSVGGEDYYKVQHIP 897

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00120771 hypothetical protein (583 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	137
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.08
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.9
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.87
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.85
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.83
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.76
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.72
PRK15386	426	type III secretion protein GogB; Provisional	97.05
PLN03150	623	hypothetical protein; Provisional	96.82
PLN03150	623	hypothetical protein; Provisional	96.75
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.73
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	96.63
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.4
KOG0472	565	consensus Leucine-rich repeat protein [Function un	96.11
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	96.06
KOG0617	264	consensus Ras suppressor protein (contains leucine	96.03
KOG0617	264	consensus Ras suppressor protein (contains leucine	95.78
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.68
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	95.62
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	95.59
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	95.16
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	95.15
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	95.09
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	94.83
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.72
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	94.63
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.31
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.31
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	93.86
KOG4341	483	consensus F-box protein containing LRR [General fu	93.69
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.2
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	93.11
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	92.6
PRK15386	426	type III secretion protein GogB; Provisional	92.6
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.51
KOG0472	565	consensus Leucine-rich repeat protein [Function un	92.25
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	92.08
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	92.07
KOG4237	498	consensus Extracellular matrix protein slit, conta	91.98
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	91.93
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	91.46
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	90.27
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	90.22
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	89.95
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	88.07
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	88.03
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	87.89
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	85.61
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	85.27
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	85.03
KOG2123	388	consensus Uncharacterized conserved protein [Funct	83.82
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	82.73
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	82.39
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	82.05
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	80.2

>PLN03210 Resistant to P

Probab=98.08  E-value=7e-06  Score=73.10  Aligned_cols=86  Identities=17%  Similarity=0.179  Sum_probs=58.6

Q ss_pred             ccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCC
Q 038559           12 IQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVA   91 (137)
Q Consensus        12 L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~   91 (137)
                      .+.+++|+.|.|.++..+..++    ....+++|+.|.+.++.....+....+.+++|+.|.+.+|.+++.+|.++ +++
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~~ip----~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~  704 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLKEIP----DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK  704 (1153)
T ss_pred             cccCCCCCEEECCCCCCcCcCC----ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence            3467777777776555455442    12356788888887754333222333668888888888888888888876 688


Q ss_pred             CCCEEEEcCCC
Q 038559           92 TLKQLQILPLL  102 (137)
Q Consensus        92 sL~~L~i~~~~  102 (137)
                      +|+.|.+++|.
T Consensus       705 sL~~L~Lsgc~  715 (1153)
T PLN03210        705 SLYRLNLSGCS  715 (1153)
T ss_pred             CCCEEeCCCCC
Confidence            88888888875

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.90  E-value=2e-05  Score=68.63  Aligned_cols=60  Identities=22%  Similarity=0.190  Sum_probs=28.0

Q ss_pred             cccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEcCC
Q 038559           42 FHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPL  101 (137)
Q Consensus        42 f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~  101 (137)
                      +++|++|++.++.+...+...-+.|++|+.|.+.++.-...+|..+.++++|++|++.+|
T Consensus       187 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  246 (968)
T PLN00113        187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN  246 (968)
T ss_pred             CcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc
Confidence            445555555443222111111234555555555554433345555555566666655544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.87  E-value=1.8e-05  Score=68.89  Aligned_cols=89  Identities=19%  Similarity=0.134  Sum_probs=63.5

Q ss_pred             cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCC
Q 038559           11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFV   90 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l   90 (137)
                      .++.+++|++|+|.++.-...++   ...+.+++|+.|++.++.+...+...-+.|++|+.|.+.+|.-...+|..+.++
T Consensus       494 ~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  570 (968)
T PLN00113        494 KLGSLSELMQLKLSENKLSGEIP---DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNV  570 (968)
T ss_pred             hhhhhhccCEEECcCCcceeeCC---hHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcC
Confidence            45677777877777553222231   112367889999998865554433333678999999999887667889999999


Q ss_pred             CCCCEEEEcCCC
Q 038559           91 ATLKQLQILPLL  102 (137)
Q Consensus        91 ~sL~~L~i~~~~  102 (137)
                      ++|+.|++++|+
T Consensus       571 ~~L~~l~ls~N~  582 (968)
T PLN00113        571 ESLVQVNISHNH  582 (968)
T ss_pred             cccCEEeccCCc
Confidence            999999998876

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.85  E-value=4.4e-06  Score=59.60  Aligned_cols=112  Identities=21%  Similarity=0.171  Sum_probs=44.2

Q ss_pred             cccc-CCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccc--cc
Q 038559           10 LVIQ-LLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLL--ED   86 (137)
Q Consensus        10 ~~L~-~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp--~g   86 (137)
                      +.|+ .|.+|+.|+|+++. +..+    -+...+++|++|.+.+.........-..++|+|+.|.+.+- ++..+-  ..
T Consensus        35 e~L~~~l~~L~~L~Ls~N~-I~~l----~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~  108 (175)
T PF14580_consen   35 ENLGATLDKLEVLDLSNNQ-ITKL----EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN-KISDLNELEP  108 (175)
T ss_dssp             -S--TT-TT--EEE-TTS---S------TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGG
T ss_pred             cchhhhhcCCCEEECCCCC-Cccc----cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC-cCCChHHhHH
Confidence            4566 57889999998654 4444    22336889999999985443221000135899999999653 333332  34


Q ss_pred             ccCCCCCCEEEEcCCCHHHHHhhCCCCCcCc-ceeeccceeeecccccc
Q 038559           87 LQFVATLKQLQILPLLDEHKERLKPYGGEEN-YKIRHIPQTPGRGYSRV  134 (137)
Q Consensus        87 l~~l~sL~~L~i~~~~~~l~~~~~~~~~~~~-~~i~hi~~i~~~~~~~~  134 (137)
                      +..+++|+.|++.++|-     + .. ..++ ..+.++|.+..-+..++
T Consensus       109 L~~l~~L~~L~L~~NPv-----~-~~-~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen  109 LSSLPKLRVLSLEGNPV-----C-EK-KNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             GGG-TT--EEE-TT-GG-----G-GS-TTHHHHHHHH-TT-SEETTEET
T ss_pred             HHcCCCcceeeccCCcc-----c-ch-hhHHHHHHHHcChhheeCCEEc
Confidence            66789999999999982     1 11 1222 44567887776555443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.83  E-value=4.4e-05  Score=44.70  Aligned_cols=36  Identities=22%  Similarity=0.321  Sum_probs=18.6

Q ss_pred             cCCccceEeeccCcccccccc-cccCCCCCCEEEEcCC
Q 038559           65 ALPSLKYLQLHKCLKLRMLLE-DLQFVATLKQLQILPL  101 (137)
Q Consensus        65 ~mp~L~~L~i~~c~~l~~lp~-gl~~l~sL~~L~i~~~  101 (137)
                      .|++|+.|.+.++ +++.+|. .+.++++|++|+++++
T Consensus        23 ~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen   23 NLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred             CCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence            4555555555533 3444443 3455556666665554

...

>PLN03210 Resistant to P

Probab=97.76  E-value=6.6e-05  Score=67.01  Aligned_cols=82  Identities=18%  Similarity=0.174  Sum_probs=57.5

Q ss_pred             CccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCE
Q 038559           16 PNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQ   95 (137)
Q Consensus        16 p~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~   95 (137)
                      .+|+.|.+.++. ++.+   ..+...+++|+.|++.+......+ ...+.+++|+.|.+.+|..+..+|..+.++++|+.
T Consensus       611 ~~L~~L~L~~s~-l~~L---~~~~~~l~~Lk~L~Ls~~~~l~~i-p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~  685 (1153)
T PLN03210        611 ENLVKLQMQGSK-LEKL---WDGVHSLTGLRNIDLRGSKNLKEI-PDLSMATNLETLKLSDCSSLVELPSSIQYLNKLED  685 (1153)
T ss_pred             cCCcEEECcCcc-cccc---ccccccCCCCCEEECCCCCCcCcC-CccccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence            345555554332 3333   122236788888888874333222 22356899999999999999999999999999999


Q ss_pred             EEEcCCC
Q 038559           96 LQILPLL  102 (137)
Q Consensus        96 L~i~~~~  102 (137)
                      |.+++|.
T Consensus       686 L~L~~c~  692 (1153)
T PLN03210        686 LDMSRCE  692 (1153)
T ss_pred             EeCCCCC
Confidence            9999986

syringae 6; Provisional

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.72  E-value=8.5e-05  Score=43.44  Aligned_cols=60  Identities=28%  Similarity=0.342  Sum_probs=42.7

Q ss_pred             CccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCc
Q 038559           16 PNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCL   78 (137)
Q Consensus        16 p~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~   78 (137)
                      |+|++|.|.++ .+..++.+.+.  ++++|++|++.+..+.....-.-..||+|+.|.+.++.
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~--~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFS--NLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTT--TGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHc--CCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            78999999876 47777443443  78999999999866543211112569999999998764

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.05  E-value=0.001  Score=53.47  Aligned_cols=83  Identities=17%  Similarity=0.125  Sum_probs=42.0

Q ss_pred             cccccCCC-ccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeecc--Ccccccccc
Q 038559            9 ALVIQLLP-NLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHK--CLKLRMLLE   85 (137)
Q Consensus         9 l~~L~~Lp-~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~--c~~l~~lp~   85 (137)
                      +..|..+| +|+.|.|.+|..+..++     ..-.++|+.|.+.++.....      --++|+.|.+..  |..+..+|.
T Consensus        64 L~sLP~LP~sLtsL~Lsnc~nLtsLP-----~~LP~nLe~L~Ls~Cs~L~s------LP~sLe~L~L~~n~~~~L~~LPs  132 (426)
T PRK15386         64 IESLPVLPNELTEITIENCNNLTTLP-----GSIPEGLEKLTVCHCPEISG------LPESVRSLEIKGSATDSIKNVPN  132 (426)
T ss_pred             CcccCCCCCCCcEEEccCCCCcccCC-----chhhhhhhheEccCcccccc------cccccceEEeCCCCCcccccCcc
Confidence            33444444 36666666555544331     11123566666665422211      123455555532  334566666


Q ss_pred             cccCC------------------CCCCEEEEcCCC
Q 038559           86 DLQFV------------------ATLKQLQILPLL  102 (137)
Q Consensus        86 gl~~l------------------~sL~~L~i~~~~  102 (137)
                      ++..|                  ++|+.|.+.+|.
T Consensus       133 sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~  167 (426)
T PRK15386        133 GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCS  167 (426)
T ss_pred             hHhheeccccccccccccccccCCcccEEEecCCC
Confidence            55444                  377888887776

>PLN03150 hypothetical protein; Provisional

Probab=96.82  E-value=0.0022  Score=53.98  Aligned_cols=86  Identities=20%  Similarity=0.175  Sum_probs=41.8

Q ss_pred             ccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCC-
Q 038559           12 IQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFV-   90 (137)
Q Consensus        12 L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l-   90 (137)
                      +++|++|+.|.|.++.-...++   ...+.+++|+.|++.++.+...+....+.|++|+.|.+.++.-...+|..+..+ 
T Consensus       438 i~~L~~L~~L~Ls~N~l~g~iP---~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~  514 (623)
T PLN03150        438 ISKLRHLQSINLSGNSIRGNIP---PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL  514 (623)
T ss_pred             HhCCCCCCEEECCCCcccCcCC---hHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhcc
Confidence            4566666666665432111221   112356666666666644433222223556666666666554334555544332 


Q ss_pred             CCCCEEEEcC
Q 038559           91 ATLKQLQILP  100 (137)
Q Consensus        91 ~sL~~L~i~~  100 (137)
                      .++..+.+.+
T Consensus       515 ~~~~~l~~~~  524 (623)
T PLN03150        515 LHRASFNFTD  524 (623)
T ss_pred             ccCceEEecC
Confidence            2334444443

>PLN03150 hypothetical protein; Provisional

Probab=96.75  E-value=0.0021  Score=54.20  Aligned_cols=63  Identities=16%  Similarity=0.109  Sum_probs=50.0

Q ss_pred             cCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559           40 GGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        40 ~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      ..+++|+.|++.+..+...+....+.|++|+.|.+.++.-...+|..+.++++|+.|+++++.
T Consensus       439 ~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~  501 (623)
T PLN03150        439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS  501 (623)
T ss_pred             hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence            368999999999865544433345789999999998875445789999999999999998764

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.73  E-value=0.0027  Score=34.92  Aligned_cols=35  Identities=20%  Similarity=0.226  Sum_probs=22.8

Q ss_pred             CccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559           67 PSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        67 p~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      |+|+.|.+.++ +++.+|..+.++++|+.|++++++
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCC
Confidence            46777777665 466676667777777777777765

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=96.63  E-value=0.00064  Score=48.51  Aligned_cols=91  Identities=21%  Similarity=0.163  Sum_probs=37.0

Q ss_pred             ccccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeee-cCCcCCccceEeeccCccccc---c
Q 038559            8 SALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEI-EEGALPSLKYLQLHKCLKLRM---L   83 (137)
Q Consensus         8 ~l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~-~~g~mp~L~~L~i~~c~~l~~---l   83 (137)
                      .++.+..|++|+.|.+.+.. +..+++ .+ ...||+|++|.+.+....++-.+ ....+|+|+.|.+.+.|-.+.   -
T Consensus        56 ~l~~l~~L~~L~~L~L~~N~-I~~i~~-~l-~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR  132 (175)
T PF14580_consen   56 KLEGLPGLPRLKTLDLSNNR-ISSISE-GL-DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYR  132 (175)
T ss_dssp             --TT----TT--EEE--SS----S-CH-HH-HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHH
T ss_pred             cccCccChhhhhhcccCCCC-CCcccc-ch-HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHH
Confidence            34567788999999997543 444411 01 12589999999998554433222 225799999999987763321   1


Q ss_pred             cccccCCCCCCEEEEcCC
Q 038559           84 LEDLQFVATLKQLQILPL  101 (137)
Q Consensus        84 p~gl~~l~sL~~L~i~~~  101 (137)
                      ..-+.++++|+.|+-...
T Consensus       133 ~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen  133 LFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             HHHHHH-TT-SEETTEET
T ss_pred             HHHHHHcChhheeCCEEc
Confidence            123567888888865433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.40  E-value=0.0012  Score=56.24  Aligned_cols=81  Identities=20%  Similarity=0.204  Sum_probs=42.1

Q ss_pred             CCCccceeeecccc-cceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccc--ccccCC
Q 038559           14 LLPNLKTLTLWLAS-KAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLL--EDLQFV   90 (137)
Q Consensus        14 ~Lp~L~~L~L~~~~-~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp--~gl~~l   90 (137)
                      .||+|+.|.+.+.. ..+.+   .--...||+|..|+|++.+....  ...+.+++|+.|.+.+.+ ++.-+  ..+-+|
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF---~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L  219 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDF---SQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLE-FESYQDLIDLFNL  219 (699)
T ss_pred             hCcccceEEecCceecchhH---HHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCC-CCchhhHHHHhcc
Confidence            58888888886421 11111   11123788888888887543322  233556666666665432 11111  133445


Q ss_pred             CCCCEEEEcC
Q 038559           91 ATLKQLQILP  100 (137)
Q Consensus        91 ~sL~~L~i~~  100 (137)
                      ++|+.|+|+.
T Consensus       220 ~~L~vLDIS~  229 (699)
T KOG3665|consen  220 KKLRVLDISR  229 (699)
T ss_pred             cCCCeeeccc
Confidence            6666666543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.11  E-value=0.0023  Score=51.34  Aligned_cols=87  Identities=21%  Similarity=0.248  Sum_probs=58.4

Q ss_pred             cccCCCccceeeecccccceeccceecCccCcccccEEEecccc---ccceee-----------------ec---CCcCC
Q 038559           11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHV---LEEWTE-----------------IE---EGALP   67 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~---~~~~~~-----------------~~---~g~mp   67 (137)
                      .+..+++|..|+|.+.. +-.+|.   ..+++-.|+.|+++...   +.+++.                 +.   .+.|.
T Consensus       430 ~l~~l~kLt~L~L~NN~-Ln~LP~---e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~  505 (565)
T KOG0472|consen  430 ELSQLQKLTFLDLSNNL-LNDLPE---EMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMR  505 (565)
T ss_pred             HHHhhhcceeeecccch-hhhcch---hhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhh
Confidence            46789999999998654 444432   22345557777666521   111100                 01   24688


Q ss_pred             ccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559           68 SLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        68 ~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      +|..|.+.+ ..+..+|.++.++++|++|.+++.|
T Consensus       506 nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  506 NLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             hcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence            888888865 3588999999999999999999987

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=96.06  E-value=0.0011  Score=55.36  Aligned_cols=59  Identities=25%  Similarity=0.371  Sum_probs=41.5

Q ss_pred             CcccccEEEeccccccceeeecCC-----cCCccceEeeccCcccccccc-cccCCCCCCEEEEcCCC
Q 038559           41 GFHKLEILIIAFHVLEEWTEIEEG-----ALPSLKYLQLHKCLKLRMLLE-DLQFVATLKQLQILPLL  102 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~~~~~~g-----~mp~L~~L~i~~c~~l~~lp~-gl~~l~sL~~L~i~~~~  102 (137)
                      ++.+|++|++.+.. ..| .++.+     .||+|++|.+.+ .+++.+|. .+..+.+|++|++.+.+
T Consensus       363 ~lssL~~LdLr~N~-ls~-~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  363 GLSSLHKLDLRSNE-LSW-CIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA  427 (873)
T ss_pred             HhhhhhhhcCcCCe-EEE-EEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCc
Confidence            45778888887643 344 34432     389999998865 56888885 66778888888886655

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=96.03  E-value=0.0003  Score=50.60  Aligned_cols=86  Identities=27%  Similarity=0.377  Sum_probs=53.2

Q ss_pred             cccCCCccceeeecccccceeccceecCccCcccccEEEecccccccee------------------------eecCCcC
Q 038559           11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWT------------------------EIEEGAL   66 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~------------------------~~~~g~m   66 (137)
                      .++.||.|++|.+. +..+..+   .-+.|+||.|+.|++.+.++.+..                        ..+.|.+
T Consensus        74 ~issl~klr~lnvg-mnrl~~l---prgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~l  149 (264)
T KOG0617|consen   74 SISSLPKLRILNVG-MNRLNIL---PRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKL  149 (264)
T ss_pred             hhhhchhhhheecc-hhhhhcC---ccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhh
Confidence            57789999999885 2223333   234568999999988875443221                        1122445


Q ss_pred             CccceEeeccCcccccccccccCCCCCCEEEEcCC
Q 038559           67 PSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPL  101 (137)
Q Consensus        67 p~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~  101 (137)
                      .+|+.|.+..- ++-++|..+..++.|++|.|.+.
T Consensus       150 t~lqil~lrdn-dll~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  150 TNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             cceeEEeeccC-chhhCcHHHHHHHHHHHHhcccc
Confidence            55555555432 46667777777788887777654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=95.78  E-value=0.0015  Score=47.06  Aligned_cols=57  Identities=23%  Similarity=0.364  Sum_probs=25.8

Q ss_pred             CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEc
Q 038559           41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQIL   99 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~   99 (137)
                      .+.+|+.|.+.+....+. .....+||+|+.|.+. ...+..+|.|+..++.|+.|++.
T Consensus        54 ~l~nlevln~~nnqie~l-p~~issl~klr~lnvg-mnrl~~lprgfgs~p~levldlt  110 (264)
T KOG0617|consen   54 ELKNLEVLNLSNNQIEEL-PTSISSLPKLRILNVG-MNRLNILPRGFGSFPALEVLDLT  110 (264)
T ss_pred             Hhhhhhhhhcccchhhhc-Chhhhhchhhhheecc-hhhhhcCccccCCCchhhhhhcc
Confidence            344555555554332222 2333445555555443 22344455555555555554443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.68  E-value=0.0027  Score=54.16  Aligned_cols=59  Identities=17%  Similarity=0.242  Sum_probs=43.2

Q ss_pred             CcccccEEEeccccccceeeec--CCcCCccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559           41 GFHKLEILIIAFHVLEEWTEIE--EGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~~~~~--~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      .||+|++|.+.+..+..- .|.  -.++|+|..|+|.++. +..+ .|+.++.+|+.|.+.+..
T Consensus       146 ~LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~L~mrnLe  206 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQVLSMRNLE  206 (699)
T ss_pred             hCcccceEEecCceecch-hHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHHHhccCCC
Confidence            589999999998432211 122  2589999999998763 5555 789999999988887665

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=95.62  E-value=0.0039  Score=54.60  Aligned_cols=39  Identities=28%  Similarity=0.318  Sum_probs=25.9

Q ss_pred             cccCCCccceeeecccccceeccceecCccCcccccEEEecc
Q 038559           11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAF   52 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~   52 (137)
                      .+..||.|+.|+|+++..+.++|.   ..+.+=+|+.|++++
T Consensus       566 ff~~m~~LrVLDLs~~~~l~~LP~---~I~~Li~LryL~L~~  604 (889)
T KOG4658|consen  566 FFRSLPLLRVLDLSGNSSLSKLPS---SIGELVHLRYLDLSD  604 (889)
T ss_pred             HHhhCcceEEEECCCCCccCcCCh---HHhhhhhhhcccccC
Confidence            367788899999987777777632   223455666666655

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=95.59  E-value=0.0051  Score=51.57  Aligned_cols=36  Identities=25%  Similarity=0.211  Sum_probs=20.6

Q ss_pred             CCccceEeeccCcccccccc-cccCCCCCCEEEEcCCC
Q 038559           66 LPSLKYLQLHKCLKLRMLLE-DLQFVATLKQLQILPLL  102 (137)
Q Consensus        66 mp~L~~L~i~~c~~l~~lp~-gl~~l~sL~~L~i~~~~  102 (137)
                      |.++++|.+.. .++.++-. ++-.+++|+.|+++...
T Consensus       268 l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~Na  304 (873)
T KOG4194|consen  268 LEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYNA  304 (873)
T ss_pred             ecccceeeccc-chhhhhhcccccccchhhhhccchhh
Confidence            44445554432 22344433 56678888888887754

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=95.16  E-value=0.0038  Score=54.35  Aligned_cols=50  Identities=22%  Similarity=0.238  Sum_probs=32.7

Q ss_pred             CCCCCccccccCCCccceeeecccccceeccceecCccCcccccEEEeccccc
Q 038559            3 HLSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVL   55 (137)
Q Consensus         3 ~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~   55 (137)
                      +|..+-+++|-.+++|+.|+|.+.+ +..+|...  ...|+.|+.|++++..+
T Consensus       370 ~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~--~~kle~LeeL~LSGNkL  419 (1081)
T KOG0618|consen  370 HLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASK--LRKLEELEELNLSGNKL  419 (1081)
T ss_pred             cccccchhhhccccceeeeeecccc-cccCCHHH--HhchHHhHHHhcccchh
Confidence            5677788999999999999997543 33332111  12466677777777543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=95.15  E-value=0.0018  Score=54.82  Aligned_cols=34  Identities=12%  Similarity=0.104  Sum_probs=18.2

Q ss_pred             cCCccceEeeccCc-ccccccccccCCCCCCEEEE
Q 038559           65 ALPSLKYLQLHKCL-KLRMLLEDLQFVATLKQLQI   98 (137)
Q Consensus        65 ~mp~L~~L~i~~c~-~l~~lp~gl~~l~sL~~L~i   98 (137)
                      .+++|++|...+-. ..+.+|.||..+..|+.+..
T Consensus       289 KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~a  323 (1255)
T KOG0444|consen  289 KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHA  323 (1255)
T ss_pred             hhHHHHHHHhccCcccccCCccchhhhhhhHHHHh
Confidence            35566666554322 34566666666666654443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=95.09  E-value=0.0016  Score=55.03  Aligned_cols=85  Identities=19%  Similarity=0.156  Sum_probs=46.6

Q ss_pred             ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecC---CcCCccceEeecc----------
Q 038559           10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEE---GALPSLKYLQLHK----------   76 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~---g~mp~L~~L~i~~----------   76 (137)
                      +.+.+|+.|.+|+|++.. ++.+   ......+..|++|.+++.++.   .|..   .+|.+|+.|.+.+          
T Consensus       144 ~lfinLtDLLfLDLS~Nr-Le~L---PPQ~RRL~~LqtL~Ls~NPL~---hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt  216 (1255)
T KOG0444|consen  144 SLFINLTDLLFLDLSNNR-LEML---PPQIRRLSMLQTLKLSNNPLN---HFQLRQLPSMTSLSVLHMSNTQRTLDNIPT  216 (1255)
T ss_pred             hHHHhhHhHhhhccccch-hhhc---CHHHHHHhhhhhhhcCCChhh---HHHHhcCccchhhhhhhcccccchhhcCCC
Confidence            445677777788777443 5555   233445667777777764332   1211   3444555554443          


Q ss_pred             --------------CcccccccccccCCCCCCEEEEcCC
Q 038559           77 --------------CLKLRMLLEDLQFVATLKQLQILPL  101 (137)
Q Consensus        77 --------------c~~l~~lp~gl~~l~sL~~L~i~~~  101 (137)
                                    |.+|..+|+.+..+.+|+.|.+++.
T Consensus       217 sld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N  255 (1255)
T KOG0444|consen  217 SLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGN  255 (1255)
T ss_pred             chhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcC
Confidence                          3344445555555666666666554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=94.83  E-value=0.0059  Score=46.19  Aligned_cols=15  Identities=13%  Similarity=-0.040  Sum_probs=7.9

Q ss_pred             cCCCCCCEEEEcCCC
Q 038559           88 QFVATLKQLQILPLL  102 (137)
Q Consensus        88 ~~l~sL~~L~i~~~~  102 (137)
                      ...++|++|.+++|.
T Consensus       190 ~~~~~L~~L~L~~n~  204 (319)
T cd00116         190 KANCNLEVLDLNNNG  204 (319)
T ss_pred             HhCCCCCEEeccCCc
Confidence            334456666665553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.72  E-value=0.087  Score=38.75  Aligned_cols=61  Identities=21%  Similarity=0.268  Sum_probs=27.1

Q ss_pred             CcccccEEEeccccccceeeec-CCcCCccceEeeccCccccc---ccccccCCCCCCEEEEcCC
Q 038559           41 GFHKLEILIIAFHVLEEWTEIE-EGALPSLKYLQLHKCLKLRM---LLEDLQFVATLKQLQILPL  101 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~~~~~-~g~mp~L~~L~i~~c~~l~~---lp~gl~~l~sL~~L~i~~~  101 (137)
                      .+|+|+.|.+.+..+.+.-..+ ..++|+|+.|.+.+-|--..   =-.-+..+++|+.|+....
T Consensus        86 ~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   86 FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             hccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            4566666666654332221111 13566666666544331100   0012344556666665443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=94.63  E-value=0.04  Score=30.13  Aligned_cols=13  Identities=23%  Similarity=0.317  Sum_probs=6.8

Q ss_pred             CcccccEEEeccc
Q 038559           41 GFHKLEILIIAFH   53 (137)
Q Consensus        41 ~f~~Lk~L~l~~~   53 (137)
                      .+++|+.|++.+.
T Consensus        22 ~l~~L~~L~l~~N   34 (44)
T PF12799_consen   22 NLPNLETLNLSNN   34 (44)
T ss_dssp             TCTTSSEEEETSS
T ss_pred             CCCCCCEEEecCC
Confidence            4555555555543

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.31  E-value=0.0041  Score=45.43  Aligned_cols=62  Identities=24%  Similarity=0.311  Sum_probs=43.8

Q ss_pred             CcccccEEEecccccc-ce-eeecCCcCCccceEeeccCccccccc-ccccCCCCCCEEEEcCCC
Q 038559           41 GFHKLEILIIAFHVLE-EW-TEIEEGALPSLKYLQLHKCLKLRMLL-EDLQFVATLKQLQILPLL  102 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~-~~-~~~~~g~mp~L~~L~i~~c~~l~~lp-~gl~~l~sL~~L~i~~~~  102 (137)
                      .+++++.|.+.++... .| +..-.+-.|+|+.|.|..|+..++-- .++.++++|+.|.|++.+
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence            5677777788775432 12 11113478999999999999886532 356778999999998887

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.31  E-value=0.034  Score=25.74  Aligned_cols=21  Identities=24%  Similarity=0.370  Sum_probs=15.7

Q ss_pred             ccceEeeccCcccccccccccC
Q 038559           68 SLKYLQLHKCLKLRMLLEDLQF   89 (137)
Q Consensus        68 ~L~~L~i~~c~~l~~lp~gl~~   89 (137)
                      +|+.|.+.+| +++.+|.++++
T Consensus         1 ~L~~Ldls~n-~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSS-EESEEGTTTTT
T ss_pred             CccEEECCCC-cCEeCChhhcC
Confidence            4788888888 67788877654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=93.86  E-value=0.013  Score=44.32  Aligned_cols=37  Identities=22%  Similarity=0.090  Sum_probs=22.5

Q ss_pred             CCccceEeeccCcc----cccccccccCCCCCCEEEEcCCC
Q 038559           66 LPSLKYLQLHKCLK----LRMLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        66 mp~L~~L~i~~c~~----l~~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      +++|+.|.+.+|.-    ...++..+.++++|++|.+++|+
T Consensus       192 ~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~  232 (319)
T cd00116         192 NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN  232 (319)
T ss_pred             CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence            34677777766641    12234445566778888887765

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=93.69  E-value=0.024  Score=45.62  Aligned_cols=88  Identities=22%  Similarity=0.340  Sum_probs=55.1

Q ss_pred             CcccccEEEecccccc--c-eeeecC--CcCCccceEeeccCccc-ccccccccCCCCCCEEEEcCCCHHHHHhhCCCCC
Q 038559           41 GFHKLEILIIAFHVLE--E-WTEIEE--GALPSLKYLQLHKCLKL-RMLLEDLQFVATLKQLQILPLLDEHKERLKPYGG  114 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~--~-~~~~~~--g~mp~L~~L~i~~c~~l-~~lp~gl~~l~sL~~L~i~~~~~~l~~~~~~~~~  114 (137)
                      ..|.|+.|.+..+.+-  + ...++.  .++..|+.+.+.+||.+ +..-+.+.+..+|+.+++.+|+.-.++-+.+   
T Consensus       370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~---  446 (483)
T KOG4341|consen  370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISR---  446 (483)
T ss_pred             CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHH---
Confidence            4677777777654221  0 001122  46888999999999876 3344556677799999999998544433332   


Q ss_pred             cCcceeeccceeeeccccccc
Q 038559          115 EENYKIRHIPQTPGRGYSRVD  135 (137)
Q Consensus       115 ~~~~~i~hi~~i~~~~~~~~~  135 (137)
                          ..+|.|++.+..|+-.+
T Consensus       447 ----~~~~lp~i~v~a~~a~~  463 (483)
T KOG4341|consen  447 ----FATHLPNIKVHAYFAPV  463 (483)
T ss_pred             ----HHhhCccceehhhccCC
Confidence                24577887777665443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.20  E-value=0.063  Score=23.33  Aligned_cols=17  Identities=35%  Similarity=0.450  Sum_probs=6.8

Q ss_pred             CccceEeeccCccccccc
Q 038559           67 PSLKYLQLHKCLKLRMLL   84 (137)
Q Consensus        67 p~L~~L~i~~c~~l~~lp   84 (137)
                      |+|+.|.+.+|. ++++|
T Consensus         1 ~~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             TT-SEEEETSS---SSE-
T ss_pred             CccCEEECCCCC-CCCCc
Confidence            345555555554 44443

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=93.11  E-value=0.16  Score=37.41  Aligned_cols=86  Identities=22%  Similarity=0.336  Sum_probs=51.3

Q ss_pred             CcccccEEEeccccccceeeec-CCcCCccceEeeccCccccccc--ccccCCCCCCEEEEcCCCHHHHHhhCCCCCcCc
Q 038559           41 GFHKLEILIIAFHVLEEWTEIE-EGALPSLKYLQLHKCLKLRMLL--EDLQFVATLKQLQILPLLDEHKERLKPYGGEEN  117 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~~~~~-~g~mp~L~~L~i~~c~~l~~lp--~gl~~l~sL~~L~i~~~~~~l~~~~~~~~~~~~  117 (137)
                      .++.|.+|.+.+....+. ... ...+|+|+.|.+.+- .+..+-  ..+..++.|++|.+.+.|.+-++.++.      
T Consensus        62 ~l~rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~------  133 (233)
T KOG1644|consen   62 HLPRLHTLLLNNNRITRI-DPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRL------  133 (233)
T ss_pred             CccccceEEecCCcceee-ccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeecCCchhcccCcee------
Confidence            678888998887544322 111 136899999998752 233322  245678899999999988544444432      


Q ss_pred             ceeeccceeeecccccc
Q 038559          118 YKIRHIPQTPGRGYSRV  134 (137)
Q Consensus       118 ~~i~hi~~i~~~~~~~~  134 (137)
                      +.+-.+|.+...+.+++
T Consensus       134 yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  134 YVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             EEEEecCcceEeehhhh
Confidence            23334555554444443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=92.60  E-value=0.074  Score=46.80  Aligned_cols=73  Identities=21%  Similarity=0.139  Sum_probs=40.2

Q ss_pred             cCCCccceeeecccccceeccce----e-cC--ccCcccccEE-EeccccccceeeecCCcCCccceEeeccCccccccc
Q 038559           13 QLLPNLKTLTLWLASKAKQLEKE----F-CS--VGGFHKLEIL-IIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLL   84 (137)
Q Consensus        13 ~~Lp~L~~L~L~~~~~~~~l~~~----~-~~--~~~f~~Lk~L-~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp   84 (137)
                      .-.|+|+.|.+..|...+.+.+.    . ..  .-.|+++..+ .+.+......+....-.+++|+.+.+..||++..+|
T Consensus       767 ~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P  846 (889)
T KOG4658|consen  767 LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLP  846 (889)
T ss_pred             hccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCc
Confidence            35689999999876644433100    0 00  1145555555 344433333333444456677777777787777766


Q ss_pred             c
Q 038559           85 E   85 (137)
Q Consensus        85 ~   85 (137)
                      .
T Consensus       847 ~  847 (889)
T KOG4658|consen  847 L  847 (889)
T ss_pred             c
Confidence            4

>PRK15386 type III secretion protein GogB; Provisional

Probab=92.60  E-value=0.13  Score=41.49  Aligned_cols=66  Identities=17%  Similarity=0.129  Sum_probs=46.7

Q ss_pred             ccCCCccceeeecccccceeccceecCccCcc-cccEEEeccccccceeeecCCcC-CccceEeeccCccccccccccc
Q 038559           12 IQLLPNLKTLTLWLASKAKQLEKEFCSVGGFH-KLEILIIAFHVLEEWTEIEEGAL-PSLKYLQLHKCLKLRMLLEDLQ   88 (137)
Q Consensus        12 L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~-~Lk~L~l~~~~~~~~~~~~~g~m-p~L~~L~i~~c~~l~~lp~gl~   88 (137)
                      +..+++|..|.|.+| .+..+|       .+| +|++|.+.++..+..+   .+.+ ++|+.|.+.+|.++..+|.++.
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP-------~LP~sLtsL~Lsnc~nLtsL---P~~LP~nLe~L~Ls~Cs~L~sLP~sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLP-------VLPNELTEITIENCNNLTTL---PGSIPEGLEKLTVCHCPEISGLPESVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccC-------CCCCCCcEEEccCCCCcccC---CchhhhhhhheEccCcccccccccccc
Confidence            445688999999877 466652       355 6999999885443221   1233 4899999999988888887543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.51  E-value=0.0066  Score=44.39  Aligned_cols=76  Identities=16%  Similarity=-0.077  Sum_probs=47.3

Q ss_pred             CCCCCccccccCCCccceeeecccccceeccceecCccCcccccEEEecccccc-ceeeecCCcCCccceEeeccCcc
Q 038559            3 HLSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLE-EWTEIEEGALPSLKYLQLHKCLK   79 (137)
Q Consensus         3 ~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~-~~~~~~~g~mp~L~~L~i~~c~~   79 (137)
                      .+..+-++.|..++.++.|.+.+|.......-+.. .+.+|+|+.|+|++|..- +.=-.....+++|+.|.|.+.+.
T Consensus       112 ~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l-~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~  188 (221)
T KOG3864|consen  112 SIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERL-GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY  188 (221)
T ss_pred             hHHHHHHHHHhccchhhhheeccccchhhHHHHHh-cccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence            34445567788999999999987764433211111 237899999999976421 00000014688888888876553

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.25  E-value=0.022  Score=45.87  Aligned_cols=59  Identities=25%  Similarity=0.136  Sum_probs=37.4

Q ss_pred             CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559           41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      .+++|..|++.+.++.+. ..+..-+.+|++|++.+- .+.++|..+.++ .|+.|.+.|.|
T Consensus       250 ~L~~l~vLDLRdNklke~-Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  250 HLNSLLVLDLRDNKLKEV-PDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             ccccceeeeccccccccC-chHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCc
Confidence            456666666666544433 233344666777777542 366777777777 77888888877

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=92.08  E-value=0.24  Score=42.94  Aligned_cols=31  Identities=29%  Similarity=0.348  Sum_probs=17.4

Q ss_pred             ccceEeeccCcccccccccccCCCCCCEEEEcCC
Q 038559           68 SLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPL  101 (137)
Q Consensus        68 ~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~  101 (137)
                      +|+.|.+. |.++..+|..+  ..+|+.|.++++
T Consensus       263 ~L~~L~Ls-~N~L~~LP~~l--~~sL~~L~Ls~N  293 (754)
T PRK15370        263 ALQSLDLF-HNKISCLPENL--PEELRYLSVYDN  293 (754)
T ss_pred             CCCEEECc-CCccCcccccc--CCCCcEEECCCC
Confidence            56666654 33455566544  246666666654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=92.07  E-value=0.24  Score=42.94  Aligned_cols=75  Identities=19%  Similarity=0.140  Sum_probs=50.8

Q ss_pred             CccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCE
Q 038559           16 PNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQ   95 (137)
Q Consensus        16 p~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~   95 (137)
                      ++|+.|.|.+. .+..++     ...+++|+.|++.++.+..   +..+..++|+.|.+.+|. +..+|..+  .++|+.
T Consensus       199 ~~L~~L~Ls~N-~LtsLP-----~~l~~nL~~L~Ls~N~Lts---LP~~l~~~L~~L~Ls~N~-L~~LP~~l--~s~L~~  266 (754)
T PRK15370        199 EQITTLILDNN-ELKSLP-----ENLQGNIKTLYANSNQLTS---IPATLPDTIQEMELSINR-ITELPERL--PSALQS  266 (754)
T ss_pred             cCCcEEEecCC-CCCcCC-----hhhccCCCEEECCCCcccc---CChhhhccccEEECcCCc-cCcCChhH--hCCCCE
Confidence            36888888754 355552     2345789999998865432   223344689999998774 67888776  358999


Q ss_pred             EEEcCCC
Q 038559           96 LQILPLL  102 (137)
Q Consensus        96 L~i~~~~  102 (137)
                      |+++++.
T Consensus       267 L~Ls~N~  273 (754)
T PRK15370        267 LDLFHNK  273 (754)
T ss_pred             EECcCCc
Confidence            9987653

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=91.98  E-value=0.14  Score=41.18  Aligned_cols=85  Identities=26%  Similarity=0.321  Sum_probs=53.3

Q ss_pred             cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCc---CCccceEeeccCcccc-ccccc
Q 038559           11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGA---LPSLKYLQLHKCLKLR-MLLED   86 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~---mp~L~~L~i~~c~~l~-~lp~g   86 (137)
                      .+.+||+|+.|.|.+.. +..+....|  ++...+++|.+....+.   .++.++   +..|+.|.+.+- +++ -.|..
T Consensus       269 cf~~L~~L~~lnlsnN~-i~~i~~~aF--e~~a~l~eL~L~~N~l~---~v~~~~f~~ls~L~tL~L~~N-~it~~~~~a  341 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSNNK-ITRIEDGAF--EGAAELQELYLTRNKLE---FVSSGMFQGLSGLKTLSLYDN-QITTVAPGA  341 (498)
T ss_pred             HHhhcccceEeccCCCc-cchhhhhhh--cchhhhhhhhcCcchHH---HHHHHhhhccccceeeeecCC-eeEEEeccc
Confidence            47899999999998543 443311112  24567888888775443   344444   445666665432 343 35677


Q ss_pred             ccCCCCCCEEEEcCCC
Q 038559           87 LQFVATLKQLQILPLL  102 (137)
Q Consensus        87 l~~l~sL~~L~i~~~~  102 (137)
                      ++.+.+|.+|.+...|
T Consensus       342 F~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  342 FQTLFSLSTLNLLSNP  357 (498)
T ss_pred             ccccceeeeeehccCc
Confidence            8889999999886554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=91.93  E-value=0.033  Score=43.41  Aligned_cols=62  Identities=19%  Similarity=0.151  Sum_probs=30.6

Q ss_pred             CcccccEEEeccccccceeee-cCCcCCccceEeeccCcccc-cccccccCCCCCCEEEEcCCC
Q 038559           41 GFHKLEILIIAFHVLEEWTEI-EEGALPSLKYLQLHKCLKLR-MLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~~~~-~~g~mp~L~~L~i~~c~~l~-~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      ..|+|..|+++++....--.+ +--.++.|++|.+..|..+. ..-..+...++|.+|++.+|-
T Consensus       311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            456666666665322211011 11246666666666665431 111134455666666666665

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=91.46  E-value=0.25  Score=43.05  Aligned_cols=34  Identities=18%  Similarity=0.137  Sum_probs=25.2

Q ss_pred             ccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559           68 SLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        68 ~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      +|+.|.+.+. +++.+|..+.++++|+.|++++++
T Consensus       423 ~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        423 GLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             hhhhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence            4555555432 467788888889999999998886

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=90.27  E-value=0.45  Score=41.48  Aligned_cols=18  Identities=28%  Similarity=0.338  Sum_probs=9.2

Q ss_pred             CCccceEeeccCccccccc
Q 038559           66 LPSLKYLQLHKCLKLRMLL   84 (137)
Q Consensus        66 mp~L~~L~i~~c~~l~~lp   84 (137)
                      +|+|+.|.+.++ ++..+|
T Consensus       301 p~~L~~LdLS~N-~L~~Lp  318 (788)
T PRK15387        301 PPGLQELSVSDN-QLASLP  318 (788)
T ss_pred             ccccceeECCCC-ccccCC
Confidence            355666666554 344443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=90.22  E-value=0.21  Score=37.77  Aligned_cols=69  Identities=22%  Similarity=0.162  Sum_probs=37.2

Q ss_pred             ccccccCCCccceeeecccccc--eeccceecCccCcccccEEEecccccc--ceeeecCCcCCccceEeeccCccc
Q 038559            8 SALVIQLLPNLKTLTLWLASKA--KQLEKEFCSVGGFHKLEILIIAFHVLE--EWTEIEEGALPSLKYLQLHKCLKL   80 (137)
Q Consensus         8 ~l~~L~~Lp~L~~L~L~~~~~~--~~l~~~~~~~~~f~~Lk~L~l~~~~~~--~~~~~~~g~mp~L~~L~i~~c~~l   80 (137)
                      .+..+.+||+|++|.++..+..  ..+   .+.+...|+|+.|.+++...-  +.+ -....+++|..|.+.+|+-.
T Consensus        57 t~~~~P~Lp~LkkL~lsdn~~~~~~~l---~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   57 TLTNFPKLPKLKKLELSDNYRRVSGGL---EVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             ecccCCCcchhhhhcccCCcccccccc---eehhhhCCceeEEeecCCcccccccc-chhhhhcchhhhhcccCCcc
Confidence            3444567778888888643211  112   122334488888888774321  111 11235667777777777643

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=89.95  E-value=0.12  Score=42.06  Aligned_cols=62  Identities=19%  Similarity=0.162  Sum_probs=34.3

Q ss_pred             CcccccEEEecccccccee-eecCCcCCccceEeeccCc--cccccccc----ccCCCCCCEEEEcCCC
Q 038559           41 GFHKLEILIIAFHVLEEWT-EIEEGALPSLKYLQLHKCL--KLRMLLED----LQFVATLKQLQILPLL  102 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~~-~~~~g~mp~L~~L~i~~c~--~l~~lp~g----l~~l~sL~~L~i~~~~  102 (137)
                      -++.|++|+|++.++...- ....|.+|.|+.|.+..|.  .+...+.+    ...+.+|+.|.+...+
T Consensus       244 i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~  312 (505)
T KOG3207|consen  244 ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN  312 (505)
T ss_pred             hhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence            4566777777764332110 0123678888888876653  22222221    2346677888876665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=88.07  E-value=0.12  Score=39.04  Aligned_cols=62  Identities=24%  Similarity=0.221  Sum_probs=36.6

Q ss_pred             CcccccEEEecccc--ccceeeecCCcCCccceEeeccCc--ccccccccccCCCCCCEEEEcCCCH
Q 038559           41 GFHKLEILIIAFHV--LEEWTEIEEGALPSLKYLQLHKCL--KLRMLLEDLQFVATLKQLQILPLLD  103 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~--~~~~~~~~~g~mp~L~~L~i~~c~--~l~~lp~gl~~l~sL~~L~i~~~~~  103 (137)
                      -+|+||.|.++...  ....+.+-.-..|+|++|.+..-.  .+.+++ .+..+.+|..|.+.+|++
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~  128 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSV  128 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCc
Confidence            45788888887631  111111222234999999885422  133443 245677888888888874

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=88.03  E-value=0.069  Score=44.75  Aligned_cols=60  Identities=28%  Similarity=0.300  Sum_probs=38.2

Q ss_pred             cCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559           40 GGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        40 ~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      +++.+|+.|.+....++.. ..+.+.+| |-+|++ .|.++..+|..+.+++.|+.|.+.++|
T Consensus       186 ~~l~slr~l~vrRn~l~~l-p~El~~Lp-Li~lDf-ScNkis~iPv~fr~m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  186 GYLTSLRDLNVRRNHLEDL-PEELCSLP-LIRLDF-SCNKISYLPVDFRKMRHLQVLQLENNP  245 (722)
T ss_pred             hhHHHHHHHHHhhhhhhhC-CHHHhCCc-eeeeec-ccCceeecchhhhhhhhheeeeeccCC
Confidence            3555566555554332221 12222222 444544 688999999999999999999998876

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=87.89  E-value=0.064  Score=41.98  Aligned_cols=13  Identities=38%  Similarity=0.539  Sum_probs=7.1

Q ss_pred             ccCCCccceeeec
Q 038559           12 IQLLPNLKTLTLW   24 (137)
Q Consensus        12 L~~Lp~L~~L~L~   24 (137)
                      |+.|++|+.|+|+
T Consensus       325 La~L~~L~~LDLS  337 (490)
T KOG1259|consen  325 LAELPQLQLLDLS  337 (490)
T ss_pred             hhhcccceEeecc
Confidence            4455555555554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=85.61  E-value=0.4  Score=37.68  Aligned_cols=55  Identities=25%  Similarity=0.202  Sum_probs=24.0

Q ss_pred             cccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEcC
Q 038559           44 KLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILP  100 (137)
Q Consensus        44 ~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~  100 (137)
                      +|+.|++.+...... .-..+.+|.|+.|.+.+++ +..+|.....+++|+.|++++
T Consensus       141 nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~  195 (394)
T COG4886         141 NLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSG  195 (394)
T ss_pred             hcccccccccchhhh-hhhhhccccccccccCCch-hhhhhhhhhhhhhhhheeccC
Confidence            555555554322211 0122455555555555443 444444333344444444443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=85.27  E-value=0.49  Score=38.57  Aligned_cols=70  Identities=24%  Similarity=0.351  Sum_probs=44.2

Q ss_pred             CCCccccccCCCccceeeecccccceecc---cee-cCccCcccccEEEeccccccceeeecC-CcCCccceEeec
Q 038559            5 SENSALVIQLLPNLKTLTLWLASKAKQLE---KEF-CSVGGFHKLEILIIAFHVLEEWTEIEE-GALPSLKYLQLH   75 (137)
Q Consensus         5 ~~~~l~~L~~Lp~L~~L~L~~~~~~~~l~---~~~-~~~~~f~~Lk~L~l~~~~~~~~~~~~~-g~mp~L~~L~i~   75 (137)
                      ..+.+..++.||.|..|.+..+. +..+.   .+. .....||+|+.|.+...+..+|-.+.. -.+++|+.|.+.
T Consensus       260 ~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~  334 (505)
T KOG3207|consen  260 DFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT  334 (505)
T ss_pred             ccccccccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence            44566778899999999887442 33331   000 112369999999998876666643332 457778877764

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=85.03  E-value=0.07  Score=46.07  Aligned_cols=81  Identities=22%  Similarity=0.324  Sum_probs=36.2

Q ss_pred             cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCC
Q 038559           11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFV   90 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l   90 (137)
                      .|+-||.|++|+|+... ..+.    -.-..+++||.|+|.+.-+-....+...+. .|+.|.+.+- .++.+ .||++|
T Consensus       182 SLqll~ale~LnLshNk-~~~v----~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN-~l~tL-~gie~L  253 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHNK-FTKV----DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN-ALTTL-RGIENL  253 (1096)
T ss_pred             HHHHHHHhhhhccchhh-hhhh----HHHHhcccccccccccchhccccccchhhh-hheeeeeccc-HHHhh-hhHHhh
Confidence            45667777777776321 1111    111256777777776632221111221111 2555555432 23332 244555


Q ss_pred             CCCCEEEEc
Q 038559           91 ATLKQLQIL   99 (137)
Q Consensus        91 ~sL~~L~i~   99 (137)
                      .+|+.|+++
T Consensus       254 ksL~~LDls  262 (1096)
T KOG1859|consen  254 KSLYGLDLS  262 (1096)
T ss_pred             hhhhccchh
Confidence            555555543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.82  E-value=0.061  Score=41.58  Aligned_cols=66  Identities=24%  Similarity=0.303  Sum_probs=38.6

Q ss_pred             CccccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceee-ecCCcCCccceEeeccC
Q 038559            7 NSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTE-IEEGALPSLKYLQLHKC   77 (137)
Q Consensus         7 ~~l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~-~~~g~mp~L~~L~i~~c   77 (137)
                      +|+.+..+||.|+.|.|+ ..++..+    -+...+.+|++|++........-. +-...+|+|+.|.+..-
T Consensus        32 ~DIsic~kMp~lEVLsLS-vNkIssL----~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN   98 (388)
T KOG2123|consen   32 DDISICEKMPLLEVLSLS-VNKISSL----APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN   98 (388)
T ss_pred             cHHHHHHhcccceeEEee-ccccccc----hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence            567778899999999997 1124433    122356778888776532211000 11246888888877543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=82.73  E-value=0.74  Score=36.81  Aligned_cols=15  Identities=13%  Similarity=0.053  Sum_probs=7.5

Q ss_pred             cCCCCCCEEEEcCCC
Q 038559           88 QFVATLKQLQILPLL  102 (137)
Q Consensus        88 ~~l~sL~~L~i~~~~  102 (137)
                      .++.+|+.+++.+..
T Consensus       183 ~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  183 SELISLEELDLGGNS  197 (414)
T ss_pred             hhccchHHHhccCCc
Confidence            445555555554443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=82.39  E-value=0.37  Score=37.87  Aligned_cols=79  Identities=23%  Similarity=0.277  Sum_probs=44.5

Q ss_pred             ccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEE
Q 038559           17 NLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQL   96 (137)
Q Consensus        17 ~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L   96 (137)
                      +|+.|++.+.. +..+   .-..+.+++|+.|.+....+.+. ....+..+.|+.|.+.+. ++..+|..+.....|++|
T Consensus       141 nL~~L~l~~N~-i~~l---~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l  214 (394)
T COG4886         141 NLKELDLSDNK-IESL---PSPLRNLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEEL  214 (394)
T ss_pred             hcccccccccc-hhhh---hhhhhccccccccccCCchhhhh-hhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhh
Confidence            67777775332 3322   11234678888888887554432 232336777777777653 456666644445556666


Q ss_pred             EEcCC
Q 038559           97 QILPL  101 (137)
Q Consensus        97 ~i~~~  101 (137)
                      .+.+.
T Consensus       215 ~~~~N  219 (394)
T COG4886         215 DLSNN  219 (394)
T ss_pred             hhcCC
Confidence            65554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=82.05  E-value=0.38  Score=38.43  Aligned_cols=82  Identities=21%  Similarity=0.285  Sum_probs=44.4

Q ss_pred             ccCCCccceeeecccccceeccceecC-ccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCC
Q 038559           12 IQLLPNLKTLTLWLASKAKQLEKEFCS-VGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFV   90 (137)
Q Consensus        12 L~~Lp~L~~L~L~~~~~~~~l~~~~~~-~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l   90 (137)
                      ++.+.+|..|.+.+.. ++.+    .. ...+++|+.|++.+......  .....++.|+.|.+.+.+ +..+ .++.++
T Consensus        91 l~~~~~l~~l~l~~n~-i~~i----~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~-i~~~-~~~~~l  161 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNK-IEKI----ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNL-ISDI-SGLESL  161 (414)
T ss_pred             cccccceeeeeccccc-hhhc----ccchhhhhcchheeccccccccc--cchhhccchhhheeccCc-chhc-cCCccc
Confidence            5667777777776432 4443    12 34577777777776433221  112346667777765543 3332 234446


Q ss_pred             CCCCEEEEcCCC
Q 038559           91 ATLKQLQILPLL  102 (137)
Q Consensus        91 ~sL~~L~i~~~~  102 (137)
                      ++|+.+++.++.
T Consensus       162 ~~L~~l~l~~n~  173 (414)
T KOG0531|consen  162 KSLKLLDLSYNR  173 (414)
T ss_pred             hhhhcccCCcch
Confidence            666666665543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=80.20  E-value=0.36  Score=42.62  Aligned_cols=60  Identities=18%  Similarity=0.195  Sum_probs=43.3

Q ss_pred             CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559           41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      .++.|+.|.+.....-. ....-+.|.+|+.|.+ .|..+..+|.++..+.+|+.|.++...
T Consensus        66 ~l~~L~~ln~s~n~i~~-vp~s~~~~~~l~~lnL-~~n~l~~lP~~~~~lknl~~LdlS~N~  125 (1081)
T KOG0618|consen   66 LLSHLRQLNLSRNYIRS-VPSSCSNMRNLQYLNL-KNNRLQSLPASISELKNLQYLDLSFNH  125 (1081)
T ss_pred             hHHHHhhcccchhhHhh-Cchhhhhhhcchhhee-ccchhhcCchhHHhhhcccccccchhc
Confidence            45667777666532221 2344568999999977 478899999999999999999987653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	137
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 37.9 bits (87), Expect = 5e-04
 Identities = 12/105 (11%), Positives = 32/105 (30%), Gaps = 22/105 (20%)

Query: 42  FHKLEIL----IIAFHVLEE-WTEIEEGALPSLKYLQLHKCLKLRML----------LED 86
           F +L +      I   +L   W ++ +  +  +    ++K  K  ++          +  
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV----VNKLHKYSLVEKQPKESTISIPS 430

Query: 87  LQFVATLKQLQILPLLDEHKERLKPYGGEENYKIRHIPQTPGRGY 131
           +     +K      L   H+  +  Y   + +    +       Y
Sbjct: 431 IYLELKVKLENEYAL---HRSIVDHYNIPKTFDSDDLIPPYLDQY 472

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	137
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.67
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.64
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.6
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.55
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.51
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.48
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.45
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.44
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.43
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.42
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.39
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.39
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.34
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.33
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.32
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.31
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.31
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.3
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.29
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.29
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.28
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.28
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.28
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.27
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.27
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.26
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.23
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.23
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.2
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.19
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.18
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.1
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.1
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.1
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.1
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.1
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.09
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.03
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.03
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.02
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.02
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.01
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.0
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.0
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.0
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.99
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.97
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.96
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	97.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.94
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	97.94
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.93
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.89
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.89
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	97.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	97.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.86
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.86
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.86
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.85
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.85
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.83
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.83
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.8
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.8
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.79
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.78
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.78
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.77
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.76
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.75
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.75
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.73
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.73
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.73
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.72
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.71
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.67
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.64
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.61
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.61
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.58
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.55
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.55
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.53
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.48
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.47
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.43
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.42
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.38
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.34
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.3
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.28
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.27
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	97.19
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.12
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.86
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.78
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	96.77
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.74
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	96.69
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	96.39
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	96.27
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	96.06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	95.9
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	95.82
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	95.75
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	95.61
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	95.43
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	95.4
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	95.39
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	94.58
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	94.53
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	94.2
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	92.74
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	92.02
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	91.55
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	88.85
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	84.22
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	80.07

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.67  E-value=4.6e-08  Score=74.13  Aligned_cols=87  Identities=25%  Similarity=0.211  Sum_probs=51.3

Q ss_pred             ccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCC
Q 038559           12 IQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVA   91 (137)
Q Consensus        12 L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~   91 (137)
                      ++++++|++|.|.++. +..++   ...+.+++|+.|++.++.....+....+.+++|+.|.+.+|..+..+|..+.+++
T Consensus       202 l~~l~~L~~L~L~~N~-l~~l~---~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~  277 (328)
T 4fcg_A          202 IANLQNLKSLKIRNSP-LSALG---PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT  277 (328)
T ss_dssp             GGGCTTCCEEEEESSC-CCCCC---GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT
T ss_pred             hcCCCCCCEEEccCCC-CCcCc---hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC
Confidence            4455555555554332 22221   1123566677777766444433323335677777777777777777777777777


Q ss_pred             CCCEEEEcCCC
Q 038559           92 TLKQLQILPLL  102 (137)
Q Consensus        92 sL~~L~i~~~~  102 (137)
                      +|++|++++|+
T Consensus       278 ~L~~L~L~~n~  288 (328)
T 4fcg_A          278 QLEKLDLRGCV  288 (328)
T ss_dssp             TCCEEECTTCT
T ss_pred             CCCEEeCCCCC
Confidence            77777777765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.64  E-value=2.4e-08  Score=83.41  Aligned_cols=113  Identities=12%  Similarity=0.065  Sum_probs=71.2

Q ss_pred             cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCC
Q 038559           11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFV   90 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l   90 (137)
                      .++.+++|++|+|++..-...+|   ...+.+++|+.|++.+..+...+...-+.|++|+.|.+.++.-...+|..+.++
T Consensus       627 ~~~~l~~L~~LdLs~N~l~g~ip---~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l  703 (768)
T 3rgz_A          627 TFDNNGSMMFLDMSYNMLSGYIP---KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL  703 (768)
T ss_dssp             SCSSSBCCCEEECCSSCCBSCCC---GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred             hhhccccccEEECcCCcccccCC---HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC
Confidence            46778999999998554222332   123478999999999876654444445789999999998876556789999999


Q ss_pred             CCCCEEEEcCCC---------------------------HHHHHhhCCCCCcCcceeeccceee
Q 038559           91 ATLKQLQILPLL---------------------------DEHKERLKPYGGEENYKIRHIPQTP  127 (137)
Q Consensus        91 ~sL~~L~i~~~~---------------------------~~l~~~~~~~~~~~~~~i~hi~~i~  127 (137)
                      ++|+.|++++++                           ..+ ..|....+++|++|+|+|++.
T Consensus       704 ~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l-~~C~~~~~~~~~~~~~~~~~~  766 (768)
T 3rgz_A          704 TMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL-PRCDPSNADGYAHHQRSHHHH  766 (768)
T ss_dssp             CCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS-CCCCSCC--------------
T ss_pred             CCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC-cCCCCCccCCCCCCCCccccC
Confidence            999999998763                           011 256677889999999999875

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.60  E-value=2.9e-07  Score=66.25  Aligned_cols=89  Identities=22%  Similarity=0.128  Sum_probs=53.7

Q ss_pred             ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccC
Q 038559           10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQF   89 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~   89 (137)
                      ..++.+++|++|.|.+.. +..++.+.+  ..+++|+.|++.+..+.......-+.+++|+.|.+.++ ++..+|.++.+
T Consensus        58 ~~~~~l~~L~~L~L~~N~-l~~i~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~  133 (229)
T 3e6j_A           58 GVFDSLINLKELYLGSNQ-LGALPVGVF--DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIER  133 (229)
T ss_dssp             TTTTTCTTCCEEECCSSC-CCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGG
T ss_pred             HHhhCccCCcEEECCCCC-CCCcChhhc--ccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC-cccccCccccc
Confidence            346777888888887443 344421111  35677888888775443221111245777777777654 36677777777


Q ss_pred             CCCCCEEEEcCCC
Q 038559           90 VATLKQLQILPLL  102 (137)
Q Consensus        90 l~sL~~L~i~~~~  102 (137)
                      +++|+.|+++++.
T Consensus       134 l~~L~~L~L~~N~  146 (229)
T 3e6j_A          134 LTHLTHLALDQNQ  146 (229)
T ss_dssp             CTTCSEEECCSSC
T ss_pred             CCCCCEEECCCCc
Confidence            7777777776654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.55  E-value=1.1e-07  Score=71.94  Aligned_cols=88  Identities=22%  Similarity=0.212  Sum_probs=70.6

Q ss_pred             ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccC
Q 038559           10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQF   89 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~   89 (137)
                      +.++.+++|++|+|.++.....++   ...+.+++|+.|++.++.....+....+.+++|+.|.+.+|+.+..+|.++.+
T Consensus       223 ~~l~~l~~L~~L~Ls~n~~~~~~p---~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~  299 (328)
T 4fcg_A          223 PAIHHLPKLEELDLRGCTALRNYP---PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ  299 (328)
T ss_dssp             GGGGGCTTCCEEECTTCTTCCBCC---CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred             hhhccCCCCCEEECcCCcchhhhH---HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence            358899999999999765454442   22347899999999987665544444578999999999999999999999999


Q ss_pred             CCCCCEEEEcC
Q 038559           90 VATLKQLQILP  100 (137)
Q Consensus        90 l~sL~~L~i~~  100 (137)
                      +++|+.+.+..
T Consensus       300 L~~L~~l~l~~  310 (328)
T 4fcg_A          300 LPANCIILVPP  310 (328)
T ss_dssp             SCTTCEEECCG
T ss_pred             ccCceEEeCCH
Confidence            99999998753

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.51  E-value=1.9e-07  Score=65.62  Aligned_cols=87  Identities=18%  Similarity=0.166  Sum_probs=37.2

Q ss_pred             ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccC
Q 038559           10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQF   89 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~   89 (137)
                      +.++.+++|++|.+.++ .+..+    .....+++|++|++.+..+.......-+.|++|+.|.+.+|.-....|..+..
T Consensus        60 ~~l~~l~~L~~L~l~~n-~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~  134 (197)
T 4ezg_A           60 TGIEYAHNIKDLTINNI-HATNY----NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT  134 (197)
T ss_dssp             TTGGGCTTCSEEEEESC-CCSCC----GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTT
T ss_pred             HHHhcCCCCCEEEccCC-CCCcc----hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhh
Confidence            34566666666666644 22222    11224555555555553222110111133444444444443322223333444


Q ss_pred             CCCCCEEEEcCC
Q 038559           90 VATLKQLQILPL  101 (137)
Q Consensus        90 l~sL~~L~i~~~  101 (137)
                      +++|++|++++|
T Consensus       135 l~~L~~L~L~~n  146 (197)
T 4ezg_A          135 LPKVNSIDLSYN  146 (197)
T ss_dssp             CSSCCEEECCSC
T ss_pred             CCCCCEEEccCC
Confidence            444444444444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.48  E-value=1.1e-06  Score=63.81  Aligned_cols=15  Identities=27%  Similarity=0.155  Sum_probs=8.9

Q ss_pred             cccCCCccceeeecc
Q 038559           11 VIQLLPNLKTLTLWL   25 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~   25 (137)
                      .++++++|++|.|.+
T Consensus        54 ~~~~l~~L~~L~L~~   68 (251)
T 3m19_A           54 TFRGLTKLTWLNLDY   68 (251)
T ss_dssp             TTTTCTTCCEEECTT
T ss_pred             HhcCcccCCEEECCC
Confidence            455666666666653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.45  E-value=5.7e-07  Score=63.09  Aligned_cols=92  Identities=18%  Similarity=0.170  Sum_probs=62.7

Q ss_pred             CccccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccccc
Q 038559            7 NSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLED   86 (137)
Q Consensus         7 ~~l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~g   86 (137)
                      .+++.++.+++|++|.|.++. +....  ......+++|+.|++.++.........-+.+++|+.|.+.+|..+..+| .
T Consensus        79 ~~~~~l~~l~~L~~L~l~~n~-l~~~~--~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~  154 (197)
T 4ezg_A           79 TNYNPISGLSNLERLRIMGKD-VTSDK--IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-P  154 (197)
T ss_dssp             SCCGGGTTCTTCCEEEEECTT-CBGGG--SCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-G
T ss_pred             CcchhhhcCCCCCEEEeECCc-cCccc--ChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-h
Confidence            345678888999999997543 22210  1122367889999988754432111122578899999998887677777 5


Q ss_pred             ccCCCCCCEEEEcCCC
Q 038559           87 LQFVATLKQLQILPLL  102 (137)
Q Consensus        87 l~~l~sL~~L~i~~~~  102 (137)
                      +.++++|++|++++|.
T Consensus       155 l~~l~~L~~L~l~~n~  170 (197)
T 4ezg_A          155 LKTLPELKSLNIQFDG  170 (197)
T ss_dssp             GGGCSSCCEEECTTBC
T ss_pred             hcCCCCCCEEECCCCC
Confidence            7888899999988875

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.44  E-value=2e-06  Score=60.58  Aligned_cols=87  Identities=22%  Similarity=0.217  Sum_probs=41.4

Q ss_pred             cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccccc-ccC
Q 038559           11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLED-LQF   89 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~g-l~~   89 (137)
                      .++.+++|++|+|.+.. +..++...+  ..+++|++|++.+..+.......-+.+++|+.|.+.++ ++..+|.. +.+
T Consensus        47 ~~~~l~~L~~L~l~~n~-l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~  122 (208)
T 2o6s_A           47 VFDELTSLTQLYLGGNK-LQSLPNGVF--NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDK  122 (208)
T ss_dssp             TTTTCTTCSEEECCSSC-CCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred             hhcccccCcEEECCCCc-cCccChhhc--CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhcc
Confidence            35666667777665432 333311111  24566666666654332211001134556666666544 24444432 455


Q ss_pred             CCCCCEEEEcCC
Q 038559           90 VATLKQLQILPL  101 (137)
Q Consensus        90 l~sL~~L~i~~~  101 (137)
                      +++|++|+++++
T Consensus       123 l~~L~~L~l~~N  134 (208)
T 2o6s_A          123 LTQLKDLRLYQN  134 (208)
T ss_dssp             CTTCCEEECCSS
T ss_pred             CCcCCEEECCCC
Confidence            556666665554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.43  E-value=8.5e-07  Score=61.02  Aligned_cols=89  Identities=20%  Similarity=0.210  Sum_probs=57.3

Q ss_pred             ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccccc-cc
Q 038559           10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLED-LQ   88 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~g-l~   88 (137)
                      ..++.+++|++|.|.+.. +..++...  ...+++|+.|++.+..+........+.+++|+.|.+.++ .+..+|.+ +.
T Consensus        46 ~~~~~l~~L~~L~l~~n~-l~~~~~~~--~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~  121 (177)
T 2o6r_A           46 GVFDKLTQLTKLSLSQNQ-IQSLPDGV--FDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFD  121 (177)
T ss_dssp             TTTTTCTTCSEEECCSSC-CCCCCTTT--TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTT
T ss_pred             HHhcCcccccEEECCCCc-ceEeChhH--ccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhc
Confidence            346777888888887543 44442111  136788888888875444321111256788888888776 46677765 46


Q ss_pred             CCCCCCEEEEcCCC
Q 038559           89 FVATLKQLQILPLL  102 (137)
Q Consensus        89 ~l~sL~~L~i~~~~  102 (137)
                      .+++|++|++.+++
T Consensus       122 ~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          122 RLTSLQKIWLHTNP  135 (177)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             CCcccCEEEecCCC
Confidence            78888999888765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.42  E-value=1.9e-06  Score=63.30  Aligned_cols=17  Identities=29%  Similarity=0.175  Sum_probs=10.3

Q ss_pred             ccccCCCccceeeeccc
Q 038559           10 LVIQLLPNLKTLTLWLA   26 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~   26 (137)
                      +.++.+++|++|.|.++
T Consensus        79 ~~l~~l~~L~~L~L~~n   95 (272)
T 3rfs_A           79 SALKELTNLTYLILTGN   95 (272)
T ss_dssp             GGGTTCTTCCEEECTTS
T ss_pred             hhhcCCCCCCEEECCCC
Confidence            45566666666666543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.39  E-value=2.2e-06  Score=62.75  Aligned_cols=36  Identities=28%  Similarity=0.420  Sum_probs=18.2

Q ss_pred             cCCccceEeeccCccccccccc-ccCCCCCCEEEEcCC
Q 038559           65 ALPSLKYLQLHKCLKLRMLLED-LQFVATLKQLQILPL  101 (137)
Q Consensus        65 ~mp~L~~L~i~~c~~l~~lp~g-l~~l~sL~~L~i~~~  101 (137)
                      .+++|+.|.+.++ .+..+|.+ +..+++|++|+++++
T Consensus       131 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n  167 (270)
T 2o6q_A          131 SLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNN  167 (270)
T ss_dssp             TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCC
Confidence            4555555555544 24444433 445555566655544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.39  E-value=1.9e-06  Score=61.59  Aligned_cols=15  Identities=13%  Similarity=0.140  Sum_probs=8.6

Q ss_pred             cccCCCccceeeecc
Q 038559           11 VIQLLPNLKTLTLWL   25 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~   25 (137)
                      .++.+++|++|.|.+
T Consensus        51 ~~~~l~~L~~L~Ls~   65 (220)
T 2v9t_B           51 AFSPYKKLRRIDLSN   65 (220)
T ss_dssp             SSTTCTTCCEEECCS
T ss_pred             HhhCCCCCCEEECCC
Confidence            345566666666653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.34  E-value=1.5e-06  Score=62.12  Aligned_cols=61  Identities=16%  Similarity=0.197  Sum_probs=35.5

Q ss_pred             CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccc-cccccCCCCCCEEEEcCCC
Q 038559           41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRML-LEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~l-p~gl~~l~sL~~L~i~~~~  102 (137)
                      .+++|++|++.+..+.......-+.+++|+.|.+.++ ++..+ |..+..+++|+.|++.+++
T Consensus       103 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          103 GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence            4555666666554333221111245677777777664 35444 5567778888888887665

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.33  E-value=1.9e-06  Score=60.53  Aligned_cols=89  Identities=19%  Similarity=0.198  Sum_probs=61.4

Q ss_pred             ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccccc-cc
Q 038559           10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLED-LQ   88 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~g-l~   88 (137)
                      ..++.+++|++|+|.+.. +..++.+.+  ..+++|++|++.+..+.......-+.+++|+.|.+.+. .+..+|.+ +.
T Consensus        48 ~~~~~l~~L~~L~Ls~N~-i~~i~~~~f--~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~  123 (193)
T 2wfh_A           48 KELSNYKHLTLIDLSNNR-ISTLSNQSF--SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFN  123 (193)
T ss_dssp             GGGGGCTTCCEEECCSSC-CCCCCTTTT--TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTT
T ss_pred             HHhhcccCCCEEECCCCc-CCEeCHhHc--cCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhh
Confidence            467788888888887543 444421122  36788999999886544322112356899999999875 47777764 77


Q ss_pred             CCCCCCEEEEcCCC
Q 038559           89 FVATLKQLQILPLL  102 (137)
Q Consensus        89 ~l~sL~~L~i~~~~  102 (137)
                      .+++|+.|++.+++
T Consensus       124 ~l~~L~~L~L~~N~  137 (193)
T 2wfh_A          124 DLSALSHLAIGANP  137 (193)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             cCccccEEEeCCCC
Confidence            89999999998765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.32  E-value=2.7e-06  Score=60.84  Aligned_cols=88  Identities=16%  Similarity=0.206  Sum_probs=57.7

Q ss_pred             cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccc-cccccC
Q 038559           11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRML-LEDLQF   89 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~l-p~gl~~   89 (137)
                      .++.+++|++|.|.+.. +..++...  ...+++|++|++.+..+.......-+.+++|+.|.+.++. +..+ |..+..
T Consensus        52 ~~~~l~~L~~L~L~~N~-i~~i~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~  127 (220)
T 2v70_A           52 IFKKLPQLRKINFSNNK-ITDIEEGA--FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIG  127 (220)
T ss_dssp             CGGGCTTCCEEECCSSC-CCEECTTT--TTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTT
T ss_pred             hhccCCCCCEEECCCCc-CCEECHHH--hCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCC
Confidence            36778888888887543 44442111  2367888888888755443211113568888888887764 5554 567788


Q ss_pred             CCCCCEEEEcCCC
Q 038559           90 VATLKQLQILPLL  102 (137)
Q Consensus        90 l~sL~~L~i~~~~  102 (137)
                      +++|+.|+++++.
T Consensus       128 l~~L~~L~L~~N~  140 (220)
T 2v70_A          128 LSSVRLLSLYDNQ  140 (220)
T ss_dssp             CTTCSEEECTTSC
T ss_pred             CccCCEEECCCCc
Confidence            8899999988764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.31  E-value=2.6e-06  Score=59.62  Aligned_cols=88  Identities=18%  Similarity=0.186  Sum_probs=61.0

Q ss_pred             cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccc-ccccccC
Q 038559           11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRM-LLEDLQF   89 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~-lp~gl~~   89 (137)
                      .++.+++|++|+|.+.. +..+.++.  .+.+++|++|++.+..+.......-+.+++|+.|.+.+.. +.. .|..+..
T Consensus        49 ~~~~l~~L~~L~Ls~N~-l~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~  124 (192)
T 1w8a_A           49 LFGRLPHLVKLELKRNQ-LTGIEPNA--FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEH  124 (192)
T ss_dssp             SGGGCTTCCEEECCSSC-CCCBCTTT--TTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTT
T ss_pred             ccccCCCCCEEECCCCC-CCCcCHhH--cCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhc
Confidence            37788999999997543 33331111  2367889999998865543322123568999999998764 544 4677888


Q ss_pred             CCCCCEEEEcCCC
Q 038559           90 VATLKQLQILPLL  102 (137)
Q Consensus        90 l~sL~~L~i~~~~  102 (137)
                      +++|++|++.+++
T Consensus       125 l~~L~~L~L~~N~  137 (192)
T 1w8a_A          125 LNSLTSLNLASNP  137 (192)
T ss_dssp             CTTCCEEECTTCC
T ss_pred             CCCCCEEEeCCCC
Confidence            9999999998765

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.31  E-value=4.3e-06  Score=65.03  Aligned_cols=16  Identities=31%  Similarity=0.360  Sum_probs=9.4

Q ss_pred             cccCCCccceeeeccc
Q 038559           11 VIQLLPNLKTLTLWLA   26 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~   26 (137)
                      .++.+++|++|+|.++
T Consensus       294 ~~~~l~~L~~L~Ls~n  309 (455)
T 3v47_A          294 VFSHFTDLEQLTLAQN  309 (455)
T ss_dssp             TTTTCTTCCEEECTTS
T ss_pred             hcccCCCCCEEECCCC
Confidence            3556666666666543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.30  E-value=1.1e-06  Score=59.84  Aligned_cols=85  Identities=22%  Similarity=0.217  Sum_probs=56.8

Q ss_pred             ccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccc--ccccC
Q 038559           12 IQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLL--EDLQF   89 (137)
Q Consensus        12 L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp--~gl~~   89 (137)
                      ++.+++|++|.|.++. +..+    .....+++|+.|++.++.+...+....+.+++|+.|.+.++ ++..+|  ..+..
T Consensus        45 ~~~l~~L~~L~l~~n~-l~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~  118 (168)
T 2ell_A           45 TAEFVNLEFLSLINVG-LISV----SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKK  118 (168)
T ss_dssp             CGGGGGCCEEEEESSC-CCCC----SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSS
T ss_pred             HHhCCCCCEEeCcCCC-CCCh----hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhc
Confidence            4778888888887553 3332    11236788888888875544322222235888888888877 466665  57788


Q ss_pred             CCCCCEEEEcCCC
Q 038559           90 VATLKQLQILPLL  102 (137)
Q Consensus        90 l~sL~~L~i~~~~  102 (137)
                      +++|+.|++++++
T Consensus       119 l~~L~~L~l~~N~  131 (168)
T 2ell_A          119 LECLKSLDLFNCE  131 (168)
T ss_dssp             CSCCCEEECCSSG
T ss_pred             CCCCCEEEeeCCc
Confidence            8889999988875

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.29  E-value=4.9e-06  Score=60.91  Aligned_cols=60  Identities=25%  Similarity=0.263  Sum_probs=28.7

Q ss_pred             CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-cccCCCCCCEEEEcCC
Q 038559           41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DLQFVATLKQLQILPL  101 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl~~l~sL~~L~i~~~  101 (137)
                      .+++|+.|++.+..+.......-+.+++|+.|.+.++. +..+|. .+..+++|++|+++++
T Consensus       131 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N  191 (270)
T 2o6q_A          131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNN  191 (270)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred             cCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCC
Confidence            34555555555533221110001345666666665542 444443 3455566666666554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.29  E-value=2e-06  Score=61.57  Aligned_cols=89  Identities=17%  Similarity=0.217  Sum_probs=64.8

Q ss_pred             ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-ccc
Q 038559           10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DLQ   88 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl~   88 (137)
                      ..++.|++|++|.|.+.. +..++...+  .++++|+.|++.+..+.......-+.+++|+.|.+.++. +..+|. .+.
T Consensus        74 ~~~~~l~~L~~L~Ls~N~-l~~l~~~~f--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~  149 (220)
T 2v9t_B           74 DAFQGLRSLNSLVLYGNK-ITELPKSLF--EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFS  149 (220)
T ss_dssp             TTTTTCSSCCEEECCSSC-CCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTT
T ss_pred             HHhhCCcCCCEEECCCCc-CCccCHhHc--cCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHh
Confidence            567899999999998553 555532222  368999999999865543321223578999999998764 666665 478


Q ss_pred             CCCCCCEEEEcCCC
Q 038559           89 FVATLKQLQILPLL  102 (137)
Q Consensus        89 ~l~sL~~L~i~~~~  102 (137)
                      .+++|+.|++.+++
T Consensus       150 ~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          150 PLRAIQTMHLAQNP  163 (220)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             CCCCCCEEEeCCCC
Confidence            89999999998765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.28  E-value=2.7e-06  Score=62.49  Aligned_cols=36  Identities=19%  Similarity=0.215  Sum_probs=18.2

Q ss_pred             cCCccceEeeccCcccccccc-cccCCCCCCEEEEcCC
Q 038559           65 ALPSLKYLQLHKCLKLRMLLE-DLQFVATLKQLQILPL  101 (137)
Q Consensus        65 ~mp~L~~L~i~~c~~l~~lp~-gl~~l~sL~~L~i~~~  101 (137)
                      .+++|+.|.+.++. +..+|. .+.++++|+.|++.++
T Consensus       179 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          179 KLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             TCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCC
Confidence            45555555555443 333333 2455566666666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.28  E-value=1.8e-06  Score=67.73  Aligned_cols=61  Identities=25%  Similarity=0.197  Sum_probs=29.6

Q ss_pred             CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-cccCCCCCCEEEEcCC
Q 038559           41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DLQFVATLKQLQILPL  101 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl~~l~sL~~L~i~~~  101 (137)
                      .+++|++|++.+..+.......-+.+++|+.|.+.+|..+..+|. .+..+++|+.|+++++
T Consensus       145 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n  206 (452)
T 3zyi_A          145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC  206 (452)
T ss_dssp             SCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred             ccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence            345555555555333221111123456666666666555555544 2444555555555443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.28  E-value=2.9e-06  Score=61.53  Aligned_cols=60  Identities=17%  Similarity=0.188  Sum_probs=31.6

Q ss_pred             cccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-cccCCCCCCEEEEcCCC
Q 038559           42 FHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DLQFVATLKQLQILPLL  102 (137)
Q Consensus        42 f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl~~l~sL~~L~i~~~~  102 (137)
                      +++|+.|++.+..+.......-+.+++|+.|.+.++ ++..+|. .+..+++|+.|++.+++
T Consensus       130 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence            455555555553332211101234666666666654 3444543 45667777777776654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.27  E-value=3.1e-06  Score=62.25  Aligned_cols=14  Identities=36%  Similarity=0.242  Sum_probs=7.5

Q ss_pred             cccCCCccceeeec
Q 038559           11 VIQLLPNLKTLTLW   24 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~   24 (137)
                      .++.+++|++|.|.
T Consensus       100 ~~~~l~~L~~L~l~  113 (285)
T 1ozn_A          100 TFHGLGRLHTLHLD  113 (285)
T ss_dssp             TTTTCTTCCEEECT
T ss_pred             HhcCCcCCCEEECC
Confidence            34555555555554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.27  E-value=1.8e-06  Score=69.26  Aligned_cols=86  Identities=21%  Similarity=0.249  Sum_probs=42.7

Q ss_pred             cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeec-CCcCCccceEeeccCcccccccc-ccc
Q 038559           11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIE-EGALPSLKYLQLHKCLKLRMLLE-DLQ   88 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~-~g~mp~L~~L~i~~c~~l~~lp~-gl~   88 (137)
                      .+++|++|++|+|.++. +..++++.|  +.+++|++|++.+..+... ... -+.+++|+.|.+.++ ++..+|. .+.
T Consensus        71 ~f~~l~~L~~L~Ls~N~-i~~i~~~~f--~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~  145 (635)
T 4g8a_A           71 SFFSFPELQVLDLSRCE-IQTIEDGAY--QSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVET-NLASLENFPIG  145 (635)
T ss_dssp             TTTTCTTCCEEECTTCC-CCEECTTTT--TTCTTCCEEECTTCCCCEE-CGGGGTTCTTCCEEECTTS-CCCCSTTCCCT
T ss_pred             HHhCCCCCCEEECCCCc-CCCcChhHh--cCCCCCCEEEccCCcCCCC-CHHHhcCCCCCCEEECCCC-cCCCCChhhhh
Confidence            45667777777776542 444422122  2456666666666433321 111 134556666665554 2444443 244


Q ss_pred             CCCCCCEEEEcCC
Q 038559           89 FVATLKQLQILPL  101 (137)
Q Consensus        89 ~l~sL~~L~i~~~  101 (137)
                      ++++|++|+++++
T Consensus       146 ~L~~L~~L~Ls~N  158 (635)
T 4g8a_A          146 HLKTLKELNVAHN  158 (635)
T ss_dssp             TCTTCCEEECCSS
T ss_pred             cCcccCeeccccC
Confidence            5555555555443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.26  E-value=3.8e-06  Score=65.34  Aligned_cols=91  Identities=16%  Similarity=0.187  Sum_probs=45.6

Q ss_pred             ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccccc--c
Q 038559           10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLED--L   87 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~g--l   87 (137)
                      ..++++++|++|.|.++.....++.+.  ...+++|++|++.+..........-+.+++|+.|.+.+|.-...+|..  +
T Consensus        48 ~~~~~l~~L~~L~L~~n~~~~~i~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  125 (455)
T 3v47_A           48 TSFSRLQDLQFLKVEQQTPGLVIRNNT--FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFF  125 (455)
T ss_dssp             TTTSSCTTCCEEECCCCSTTCEECTTT--TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTT
T ss_pred             hHhccCccccEEECcCCcccceECccc--ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccc
Confidence            345666667776666443222221111  124666666766664433221112245666666666665422223333  5


Q ss_pred             cCCCCCCEEEEcCCC
Q 038559           88 QFVATLKQLQILPLL  102 (137)
Q Consensus        88 ~~l~sL~~L~i~~~~  102 (137)
                      .++++|++|+++++.
T Consensus       126 ~~l~~L~~L~L~~n~  140 (455)
T 3v47_A          126 KPLTSLEMLVLRDNN  140 (455)
T ss_dssp             TTCTTCCEEECCSSB
T ss_pred             cCcccCCEEECCCCc
Confidence            566666666666553

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.25  E-value=3.8e-06  Score=59.05  Aligned_cols=95  Identities=18%  Similarity=0.170  Sum_probs=65.9

Q ss_pred             CCCCccccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccc
Q 038559            4 LSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRML   83 (137)
Q Consensus         4 l~~~~l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~l   83 (137)
                      +..-+...++.+++|++|+|.++. +..++.+.  ...+++|+.|++.+..+.......-+.+++|+.|.+.++ .+..+
T Consensus        64 l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~  139 (208)
T 2o6s_A           64 LQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGV--FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSV  139 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT--TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCC
T ss_pred             cCccChhhcCCCCCcCEEECCCCc-CCccCHhH--hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-cccee
Confidence            333333457899999999998553 44442111  247899999999986544321111256899999999876 46677


Q ss_pred             ccc-ccCCCCCCEEEEcCCC
Q 038559           84 LED-LQFVATLKQLQILPLL  102 (137)
Q Consensus        84 p~g-l~~l~sL~~L~i~~~~  102 (137)
                      |.. +..+++|++|++.+++
T Consensus       140 ~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          140 PDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             CTTTTTTCTTCCEEECCSCC
T ss_pred             CHHHhccCCCccEEEecCCC
Confidence            764 6889999999998864

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.25  E-value=3.5e-06  Score=64.62  Aligned_cols=88  Identities=18%  Similarity=0.162  Sum_probs=50.5

Q ss_pred             ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccC
Q 038559           10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQF   89 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~   89 (137)
                      +.++.+|+|++|+|.++. +..+.+  .....+++|+.|++.+..+... ....+.+|+|+.|.+.++ ++..+|..+..
T Consensus       242 ~~l~~l~~L~~L~Ls~n~-l~~~~~--~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~  316 (390)
T 3o6n_A          242 AWLLNYPGLVEVDLSYNE-LEKIMY--HPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHN-HLLHVERNQPQ  316 (390)
T ss_dssp             GGGGGCTTCSEEECCSSC-CCEEES--GGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSS-CCCCCGGGHHH
T ss_pred             HHHcCCCCccEEECCCCc-CCCcCh--hHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCC-cceecCccccc
Confidence            456777888888887543 222211  1123567777777777544432 333356777777777666 35556655555


Q ss_pred             CCCCCEEEEcCCC
Q 038559           90 VATLKQLQILPLL  102 (137)
Q Consensus        90 l~sL~~L~i~~~~  102 (137)
                      +++|++|++.+++
T Consensus       317 l~~L~~L~L~~N~  329 (390)
T 3o6n_A          317 FDRLENLYLDHNS  329 (390)
T ss_dssp             HTTCSEEECCSSC
T ss_pred             cCcCCEEECCCCc
Confidence            5555555555543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.23  E-value=2.7e-06  Score=66.49  Aligned_cols=61  Identities=21%  Similarity=0.257  Sum_probs=26.9

Q ss_pred             CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-cccCCCCCCEEEEcCC
Q 038559           41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DLQFVATLKQLQILPL  101 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl~~l~sL~~L~i~~~  101 (137)
                      .+++|+.|++.+..+.......-+.+++|+.|.+.+|..+..+|. .+..+++|++|+++++
T Consensus       134 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n  195 (440)
T 3zyj_A          134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC  195 (440)
T ss_dssp             SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred             ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence            345555555554332211111113455556665555554444443 2444445555544443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.23  E-value=2.7e-06  Score=62.28  Aligned_cols=38  Identities=26%  Similarity=0.338  Sum_probs=25.7

Q ss_pred             CcCCccceEeeccCccccc--ccccccCCCCCCEEEEcCCC
Q 038559           64 GALPSLKYLQLHKCLKLRM--LLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        64 g~mp~L~~L~i~~c~~l~~--lp~gl~~l~sL~~L~i~~~~  102 (137)
                      +.+++|+.|.+.++. +..  +|..+.++++|++|+++++.
T Consensus       121 ~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~  160 (276)
T 2z62_A          121 GHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK  160 (276)
T ss_dssp             TTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             ccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCC
Confidence            456677777776553 333  56777778888888887764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.23  E-value=7.8e-06  Score=60.08  Aligned_cols=87  Identities=22%  Similarity=0.194  Sum_probs=36.4

Q ss_pred             cccCCCccceeeecccccceeccceecCccCcccccEEEecccc-ccceeeecCCcCCccceEeeccCcccccc-ccccc
Q 038559           11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHV-LEEWTEIEEGALPSLKYLQLHKCLKLRML-LEDLQ   88 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~-~~~~~~~~~g~mp~L~~L~i~~c~~l~~l-p~gl~   88 (137)
                      .++.+++|++|.|.++. +..+...  ....+++|++|++.+.. ........-+.+++|+.|.+.++. +..+ |..+.
T Consensus        51 ~~~~~~~L~~L~l~~n~-l~~~~~~--~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~  126 (285)
T 1ozn_A           51 SFRACRNLTILWLHSNV-LARIDAA--AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFR  126 (285)
T ss_dssp             TTTTCTTCCEEECCSSC-CCEECTT--TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTT
T ss_pred             HcccCCCCCEEECCCCc-cceeCHh--hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhh
Confidence            35556666666665332 2222100  11234555555555432 211100111335555555555443 2222 33344


Q ss_pred             CCCCCCEEEEcCC
Q 038559           89 FVATLKQLQILPL  101 (137)
Q Consensus        89 ~l~sL~~L~i~~~  101 (137)
                      ++++|++|+++++
T Consensus       127 ~l~~L~~L~l~~n  139 (285)
T 1ozn_A          127 GLAALQYLYLQDN  139 (285)
T ss_dssp             TCTTCCEEECCSS
T ss_pred             CCcCCCEEECCCC
Confidence            4555555555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.22  E-value=3.9e-06  Score=62.43  Aligned_cols=60  Identities=22%  Similarity=0.055  Sum_probs=37.7

Q ss_pred             CcccccEEEeccccccceeeec-CCcCCccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559           41 GFHKLEILIIAFHVLEEWTEIE-EGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~~~~~-~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      .+++|+.|++.+..+... ... -..+++|+.|.+.++ .+..+|.++....+|+.|++.++|
T Consensus       146 ~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          146 PTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             TCTTCCEEECTTSCCSCC-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             cccCCCEEECCCCcCCcc-CHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCC
Confidence            455666666665433321 111 134677777777655 366788877777888888887654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.20  E-value=9.1e-06  Score=64.77  Aligned_cols=61  Identities=20%  Similarity=0.305  Sum_probs=25.6

Q ss_pred             CcccccEEEecccccc-ceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEcCC
Q 038559           41 GFHKLEILIIAFHVLE-EWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPL  101 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~-~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~  101 (137)
                      .+++|++|++.++... ..+...-+.+++|+.|.+.+|.-....|..+.++++|++|+++++
T Consensus       443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  504 (570)
T 2z63_A          443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN  504 (570)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence            3455555555543322 111111234455555555444321222444444455555555444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.19  E-value=1.7e-06  Score=57.79  Aligned_cols=86  Identities=19%  Similarity=0.200  Sum_probs=51.5

Q ss_pred             cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccc--cccc
Q 038559           11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLL--EDLQ   88 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp--~gl~   88 (137)
                      .++.+++|++|.+.++. +..+    ...+.+++|+.|++.+......+....+.+++|+.|.+.++. +..+|  ..+.
T Consensus        37 ~~~~l~~L~~L~l~~n~-l~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~  110 (149)
T 2je0_A           37 LTDEFEELEFLSTINVG-LTSI----ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLK  110 (149)
T ss_dssp             CCTTCTTCCEEECTTSC-CCCC----TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGG
T ss_pred             HHhhcCCCcEEECcCCC-CCCc----hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc-CCChHHHHHHh
Confidence            34677777777776442 3222    112356777777777654433211112347778888777664 55543  5677


Q ss_pred             CCCCCCEEEEcCCC
Q 038559           89 FVATLKQLQILPLL  102 (137)
Q Consensus        89 ~l~sL~~L~i~~~~  102 (137)
                      ++++|++|++++++
T Consensus       111 ~l~~L~~L~l~~N~  124 (149)
T 2je0_A          111 KLENLKSLDLFNCE  124 (149)
T ss_dssp             GCTTCCEEECTTCG
T ss_pred             hCCCCCEEeCcCCc
Confidence            77788888887765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.18  E-value=5.4e-06  Score=59.52  Aligned_cols=90  Identities=18%  Similarity=0.167  Sum_probs=66.2

Q ss_pred             ccccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-c
Q 038559            8 SALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-D   86 (137)
Q Consensus         8 ~l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-g   86 (137)
                      +...++.+++|++|+|.+.. +..++...+  ..+++|+.|.+.+..+... ....+.+++|+.|.+.++ ++..+|. .
T Consensus        80 ~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~--~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N-~l~~~~~~~  154 (229)
T 3e6j_A           80 PVGVFDSLTQLTVLDLGTNQ-LTVLPSAVF--DRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQN-QLKSIPHGA  154 (229)
T ss_dssp             CTTTTTTCTTCCEEECCSSC-CCCCCTTTT--TTCTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSS-CCCCCCTTT
T ss_pred             ChhhcccCCCcCEEECCCCc-CCccChhHh--CcchhhCeEeccCCccccc-CcccccCCCCCEEECCCC-cCCccCHHH
Confidence            33457899999999998653 555522122  3789999999998655432 233367999999999876 5777775 5


Q ss_pred             ccCCCCCCEEEEcCCC
Q 038559           87 LQFVATLKQLQILPLL  102 (137)
Q Consensus        87 l~~l~sL~~L~i~~~~  102 (137)
                      +..+++|+.|++.+++
T Consensus       155 ~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          155 FDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             TTTCTTCCEEECTTSC
T ss_pred             HhCCCCCCEEEeeCCC
Confidence            7889999999998765

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.18  E-value=3.8e-06  Score=62.99  Aligned_cols=89  Identities=12%  Similarity=0.033  Sum_probs=42.2

Q ss_pred             ccccCCCccceeeecccccce-eccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccccccc
Q 038559           10 LVIQLLPNLKTLTLWLASKAK-QLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQ   88 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~-~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~   88 (137)
                      +.++++++|++|+|.++..+. .++.   ..+.+++|++|++.+..+...+...-+.+++|+.|.+.++.-...+|..+.
T Consensus        70 ~~l~~l~~L~~L~L~~~n~l~~~~p~---~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  146 (313)
T 1ogq_A           70 SSLANLPYLNFLYIGGINNLVGPIPP---AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS  146 (313)
T ss_dssp             GGGGGCTTCSEEEEEEETTEESCCCG---GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             hhHhCCCCCCeeeCCCCCcccccCCh---hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence            456777777777776321122 2211   112456666666665433222111223455555555554432224444455


Q ss_pred             CCCCCCEEEEcCC
Q 038559           89 FVATLKQLQILPL  101 (137)
Q Consensus        89 ~l~sL~~L~i~~~  101 (137)
                      .+++|++|.++++
T Consensus       147 ~l~~L~~L~L~~N  159 (313)
T 1ogq_A          147 SLPNLVGITFDGN  159 (313)
T ss_dssp             GCTTCCEEECCSS
T ss_pred             cCCCCCeEECcCC
Confidence            5555555555443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.17  E-value=1.6e-06  Score=59.11  Aligned_cols=88  Identities=22%  Similarity=0.160  Sum_probs=64.5

Q ss_pred             ccccCCCccceeeeccccccee-ccceecCccCcccccEEEeccccccceee-ecCCcCCccceEeeccCcccccccc--
Q 038559           10 LVIQLLPNLKTLTLWLASKAKQ-LEKEFCSVGGFHKLEILIIAFHVLEEWTE-IEEGALPSLKYLQLHKCLKLRMLLE--   85 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~~-l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~-~~~g~mp~L~~L~i~~c~~l~~lp~--   85 (137)
                      ..++.+++|++|.|.++. +.. +   ....+.+++|+.|++.++.+..... ...+.+++|+.|.+.+++ +..+|.  
T Consensus        65 ~~~~~l~~L~~L~Ls~N~-l~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~  139 (168)
T 2ell_A           65 SNLPKLPKLKKLELSENR-IFGGL---DMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYR  139 (168)
T ss_dssp             SSCCCCSSCCEEEEESCC-CCSCC---CHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHH
T ss_pred             hhhccCCCCCEEECcCCc-CchHH---HHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHH
Confidence            678899999999998654 332 2   1112258999999999865543211 223679999999998875 666665  


Q ss_pred             --cccCCCCCCEEEEcCCC
Q 038559           86 --DLQFVATLKQLQILPLL  102 (137)
Q Consensus        86 --gl~~l~sL~~L~i~~~~  102 (137)
                        .+..+++|+.|++.+|.
T Consensus       140 ~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A          140 ESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             HHHHTTCSSCCEETTEETT
T ss_pred             HHHHHhCccCcEecCCCCC
Confidence              68889999999998876

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.17  E-value=1.1e-05  Score=59.71  Aligned_cols=88  Identities=23%  Similarity=0.254  Sum_probs=40.8

Q ss_pred             cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccc-eeeecCCcCCccceEeeccCcccccc-ccccc
Q 038559           11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEE-WTEIEEGALPSLKYLQLHKCLKLRML-LEDLQ   88 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~-~~~~~~g~mp~L~~L~i~~c~~l~~l-p~gl~   88 (137)
                      .++.+++|++|.+.++. +..+..  .....+++|++|++.+..... ......+.+++|+.|.+.++. +..+ |..+.
T Consensus       121 ~~~~l~~L~~L~l~~n~-l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~  196 (306)
T 2z66_A          121 VFLSLRNLIYLDISHTH-TRVAFN--GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFN  196 (306)
T ss_dssp             TTTTCTTCCEEECTTSC-CEECST--TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTT
T ss_pred             hhhhccCCCEEECCCCc-CCccch--hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCHHHhc
Confidence            34555555555555332 111100  001245666666666543322 111122456666666665553 3333 44555


Q ss_pred             CCCCCCEEEEcCCC
Q 038559           89 FVATLKQLQILPLL  102 (137)
Q Consensus        89 ~l~sL~~L~i~~~~  102 (137)
                      ++++|++|+++++.
T Consensus       197 ~l~~L~~L~L~~N~  210 (306)
T 2z66_A          197 SLSSLQVLNMSHNN  210 (306)
T ss_dssp             TCTTCCEEECTTSC
T ss_pred             CCCCCCEEECCCCc
Confidence            56666666665543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.14  E-value=4.8e-06  Score=67.12  Aligned_cols=62  Identities=19%  Similarity=0.174  Sum_probs=35.9

Q ss_pred             CcccccEEEeccccccceeeecCCcCCccceEeeccCcccc-cccccccCCCCCCEEEEcCCC
Q 038559           41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLR-MLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~-~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      .+++|++|++.++.+.......-+.+++|+.|.+.++.-.. .+|..+.++++|++|+++++.
T Consensus       102 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~  164 (606)
T 3vq2_A          102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY  164 (606)
T ss_dssp             TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred             CcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence            45555555555543322111223556777777776654222 467777788888888887764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.13  E-value=4.1e-06  Score=69.96  Aligned_cols=37  Identities=11%  Similarity=0.063  Sum_probs=18.4

Q ss_pred             cCCccceEeeccCcccccccccccCCCCCCEEEEcCC
Q 038559           65 ALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPL  101 (137)
Q Consensus        65 ~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~  101 (137)
                      .+++|+.|.+.+|.-...+|..+..+++|+.|++++|
T Consensus       488 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  524 (768)
T 3rgz_A          488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN  524 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred             cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCC
Confidence            4455555555544433344555555555555555544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.13  E-value=7.6e-06  Score=59.86  Aligned_cols=88  Identities=22%  Similarity=0.209  Sum_probs=54.4

Q ss_pred             cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-cccC
Q 038559           11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DLQF   89 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl~~   89 (137)
                      .++++++|++|.|.++. +..++...  ...+++|++|++.+..+.......-+.+++|+.|.+.++. +..++. .+.+
T Consensus        47 ~~~~l~~L~~L~l~~n~-l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~  122 (276)
T 2z62_A           47 SFFSFPELQVLDLSRCE-IQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGH  122 (276)
T ss_dssp             TTTTCTTCSEEECTTCC-CCEECTTT--TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTT
T ss_pred             HhccccCCcEEECCCCc-CCccCHHH--ccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC-ccccCchhccc
Confidence            56677788888877543 33332111  2356788888887754433211122567888888887664 444443 5778


Q ss_pred             CCCCCEEEEcCCC
Q 038559           90 VATLKQLQILPLL  102 (137)
Q Consensus        90 l~sL~~L~i~~~~  102 (137)
                      +++|++|+++++.
T Consensus       123 l~~L~~L~l~~n~  135 (276)
T 2z62_A          123 LKTLKELNVAHNL  135 (276)
T ss_dssp             CTTCCEEECCSSC
T ss_pred             CCCCCEEECcCCc
Confidence            8888888887654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.11  E-value=4.4e-06  Score=62.64  Aligned_cols=89  Identities=12%  Similarity=0.069  Sum_probs=54.8

Q ss_pred             ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccC
Q 038559           10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQF   89 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~   89 (137)
                      ..++++++|++|+|.++.-...++   .....+++|++|++.+..+...+....+.+++|+.|.+.++.-...+|..+..
T Consensus        95 ~~l~~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~  171 (313)
T 1ogq_A           95 PAIAKLTQLHYLYITHTNVSGAIP---DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS  171 (313)
T ss_dssp             GGGGGCTTCSEEEEEEECCEEECC---GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC
T ss_pred             hhHhcCCCCCEEECcCCeeCCcCC---HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh
Confidence            457889999999997543222331   11235778888888775433222222356777888877766533366766666


Q ss_pred             CC-CCCEEEEcCC
Q 038559           90 VA-TLKQLQILPL  101 (137)
Q Consensus        90 l~-sL~~L~i~~~  101 (137)
                      ++ +|++|+++++
T Consensus       172 l~~~L~~L~L~~N  184 (313)
T 1ogq_A          172 FSKLFTSMTISRN  184 (313)
T ss_dssp             CCTTCCEEECCSS
T ss_pred             hhhcCcEEECcCC
Confidence            66 7777777654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.11  E-value=7.8e-06  Score=66.38  Aligned_cols=88  Identities=18%  Similarity=0.153  Sum_probs=53.8

Q ss_pred             ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccC
Q 038559           10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQF   89 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~   89 (137)
                      +.++.+|+|++|+|.++. +..+.+  ...+.+++|+.|++.++.+... ....+.+|+|+.|.+.+|. +..+|..+..
T Consensus       248 ~~l~~l~~L~~L~Ls~N~-l~~~~~--~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~  322 (597)
T 3oja_B          248 AWLLNYPGLVEVDLSYNE-LEKIMY--HPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNH-LLHVERNQPQ  322 (597)
T ss_dssp             GGGGGCTTCSEEECCSSC-CCEEES--GGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSC-CCCCGGGHHH
T ss_pred             hhhccCCCCCEEECCCCc-cCCCCH--HHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCC-CCccCccccc
Confidence            457778888888887543 322211  1123677788888877554432 3344567788888777664 5566666555


Q ss_pred             CCCCCEEEEcCCC
Q 038559           90 VATLKQLQILPLL  102 (137)
Q Consensus        90 l~sL~~L~i~~~~  102 (137)
                      +++|+.|+++++.
T Consensus       323 l~~L~~L~L~~N~  335 (597)
T 3oja_B          323 FDRLENLYLDHNS  335 (597)
T ss_dssp             HTTCSEEECCSSC
T ss_pred             CCCCCEEECCCCC
Confidence            6666666665554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.11  E-value=7.1e-06  Score=62.87  Aligned_cols=59  Identities=19%  Similarity=0.198  Sum_probs=26.9

Q ss_pred             CcccccEEEeccccccceeeec-CCcCCccceEeeccCcccccc-cccccCCCCCCEEEEcCC
Q 038559           41 GFHKLEILIIAFHVLEEWTEIE-EGALPSLKYLQLHKCLKLRML-LEDLQFVATLKQLQILPL  101 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~~~~~-~g~mp~L~~L~i~~c~~l~~l-p~gl~~l~sL~~L~i~~~  101 (137)
                      .+++|+.|++.+..+... ... -+.+++|+.|.+.++. +..+ |..+..+++|++|.++++
T Consensus       115 ~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n  175 (390)
T 3o6n_A          115 NVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN  175 (390)
T ss_dssp             TCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCCccCcC-CHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCC
Confidence            345555555554332211 111 1345555555555543 3233 233555556666665554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.10  E-value=2.1e-05  Score=58.24  Aligned_cols=88  Identities=18%  Similarity=0.108  Sum_probs=40.4

Q ss_pred             ccccCCCccceeeecccccce-eccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-cc
Q 038559           10 LVIQLLPNLKTLTLWLASKAK-QLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DL   87 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~-~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl   87 (137)
                      ..++.+++|++|.|.++.-.. .++   .....+++|+.|++.+..+.......-+.+++|+.|.+.++. +..+|. .+
T Consensus       144 ~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~  219 (306)
T 2z66_A          144 GIFNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPY  219 (306)
T ss_dssp             TTTTTCTTCCEEECTTCEEGGGEEC---SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGG
T ss_pred             hhcccCcCCCEEECCCCccccccch---hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhc
Confidence            346677777777776442111 111   112245666666666543332211112345555555555443 333322 34


Q ss_pred             cCCCCCCEEEEcCC
Q 038559           88 QFVATLKQLQILPL  101 (137)
Q Consensus        88 ~~l~sL~~L~i~~~  101 (137)
                      ..+++|+.|+++++
T Consensus       220 ~~l~~L~~L~L~~N  233 (306)
T 2z66_A          220 KCLNSLQVLDYSLN  233 (306)
T ss_dssp             TTCTTCCEEECTTS
T ss_pred             cCcccCCEeECCCC
Confidence            44455555555444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.10  E-value=7e-06  Score=58.89  Aligned_cols=86  Identities=23%  Similarity=0.254  Sum_probs=39.6

Q ss_pred             cccCCCccceeeecccccceeccceecCccCcccccEEEecc-ccccceeeec-CCcCCccceEeeccCccccccccccc
Q 038559           11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAF-HVLEEWTEIE-EGALPSLKYLQLHKCLKLRMLLEDLQ   88 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~-~~~~~~~~~~-~g~mp~L~~L~i~~c~~l~~lp~gl~   88 (137)
                      .++.+++|++|+|.++..+..++...+  ..+++|+.|++.+ ..+... ... -+.+++|+.|.+.++. +..+|. +.
T Consensus        50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f--~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~L~~L~l~~n~-l~~lp~-~~  124 (239)
T 2xwt_C           50 AFSNLPNISRIYVSIDVTLQQLESHSF--YNLSKVTHIEIRNTRNLTYI-DPDALKELPLLKFLGIFNTG-LKMFPD-LT  124 (239)
T ss_dssp             TTTTCTTCCEEEEECCSSCCEECTTTE--ESCTTCCEEEEEEETTCCEE-CTTSEECCTTCCEEEEEEEC-CCSCCC-CT
T ss_pred             HccCCCCCcEEeCCCCCCcceeCHhHc--CCCcCCcEEECCCCCCeeEc-CHHHhCCCCCCCEEeCCCCC-Cccccc-cc
Confidence            456677777777765432444421111  2456666666665 322211 110 1235555555555442 333443 33


Q ss_pred             CCCCCC---EEEEcCC
Q 038559           89 FVATLK---QLQILPL  101 (137)
Q Consensus        89 ~l~sL~---~L~i~~~  101 (137)
                      .+++|+   .|+++++
T Consensus       125 ~l~~L~~L~~L~l~~N  140 (239)
T 2xwt_C          125 KVYSTDIFFILEITDN  140 (239)
T ss_dssp             TCCBCCSEEEEEEESC
T ss_pred             cccccccccEEECCCC
Confidence            333333   4444443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.10  E-value=7.8e-06  Score=62.45  Aligned_cols=60  Identities=15%  Similarity=0.164  Sum_probs=26.5

Q ss_pred             CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccc----cCCCCCCEEEEcCC
Q 038559           41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDL----QFVATLKQLQILPL  101 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl----~~l~sL~~L~i~~~  101 (137)
                      .+++|+.|++.+..+.......-+.+++|+.|.+.++ ++..+|..+    ..+++|+.|+++++
T Consensus       110 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N  173 (361)
T 2xot_A          110 DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN  173 (361)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS
T ss_pred             CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC
Confidence            3445555555543322111011134556666655543 344555433    34566666665544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.10  E-value=4.8e-06  Score=63.09  Aligned_cols=87  Identities=22%  Similarity=0.244  Sum_probs=38.0

Q ss_pred             cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc--ccc
Q 038559           11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE--DLQ   88 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~--gl~   88 (137)
                      .++++++|++|.|.++. +..++.+.  .+.+++|++|++.+..+.......-+.+++|+.|.+.++ .+..+|.  .+.
T Consensus        71 ~~~~l~~L~~L~L~~n~-l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~  146 (353)
T 2z80_A           71 DLQRCVNLQALVLTSNG-INTIEEDS--FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFS  146 (353)
T ss_dssp             TTTTCTTCCEEECTTSC-CCEECTTT--TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCT
T ss_pred             HhccCCCCCEEECCCCc-cCccCHhh--cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhc
Confidence            46667777777776442 33331111  124455555555553322211000133455555555443 2333443  344


Q ss_pred             CCCCCCEEEEcCC
Q 038559           89 FVATLKQLQILPL  101 (137)
Q Consensus        89 ~l~sL~~L~i~~~  101 (137)
                      ++++|++|++.++
T Consensus       147 ~l~~L~~L~l~~n  159 (353)
T 2z80_A          147 HLTKLQILRVGNM  159 (353)
T ss_dssp             TCTTCCEEEEEES
T ss_pred             cCCCCcEEECCCC
Confidence            4445555544443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.10  E-value=8.5e-06  Score=68.71  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=22.1

Q ss_pred             CcCCccceEeeccCcccccc--cccccCCCCCCEEEEcCCC
Q 038559           64 GALPSLKYLQLHKCLKLRML--LEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        64 g~mp~L~~L~i~~c~~l~~l--p~gl~~l~sL~~L~i~~~~  102 (137)
                      +.+++|+.|.+.++. +..+  +..+.++++|++|.+.++.
T Consensus       120 ~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~  159 (844)
T 3j0a_A          120 RNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQ  159 (844)
T ss_dssp             SSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred             cccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCc
Confidence            346666666666553 2222  2356677777777776653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.09  E-value=6.8e-06  Score=58.95  Aligned_cols=87  Identities=10%  Similarity=0.061  Sum_probs=42.2

Q ss_pred             cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccc---eEeeccCccccccccc-
Q 038559           11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLK---YLQLHKCLKLRMLLED-   86 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~---~L~i~~c~~l~~lp~g-   86 (137)
                      .++.+++|++|.|.++..+..++.+.+  ..+++|+.|++.+..+... . .-+.+++|+   .|.+.+++.+..+|.+ 
T Consensus        75 ~f~~l~~L~~L~l~~~n~l~~i~~~~f--~~l~~L~~L~l~~n~l~~l-p-~~~~l~~L~~L~~L~l~~N~~l~~i~~~~  150 (239)
T 2xwt_C           75 SFYNLSKVTHIEIRNTRNLTYIDPDAL--KELPLLKFLGIFNTGLKMF-P-DLTKVYSTDIFFILEITDNPYMTSIPVNA  150 (239)
T ss_dssp             TEESCTTCCEEEEEEETTCCEECTTSE--ECCTTCCEEEEEEECCCSC-C-CCTTCCBCCSEEEEEEESCTTCCEECTTT
T ss_pred             HcCCCcCCcEEECCCCCCeeEcCHHHh--CCCCCCCEEeCCCCCCccc-c-ccccccccccccEEECCCCcchhhcCccc
Confidence            345566666666654333444321111  2455666666655433221 1 123445555   6666555455555542 


Q ss_pred             ccCCCCCC-EEEEcCC
Q 038559           87 LQFVATLK-QLQILPL  101 (137)
Q Consensus        87 l~~l~sL~-~L~i~~~  101 (137)
                      +.++++|+ +|++.++
T Consensus       151 ~~~l~~L~~~L~l~~n  166 (239)
T 2xwt_C          151 FQGLCNETLTLKLYNN  166 (239)
T ss_dssp             TTTTBSSEEEEECCSC
T ss_pred             ccchhcceeEEEcCCC
Confidence            45556666 6665554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.09  E-value=8e-06  Score=65.10  Aligned_cols=88  Identities=17%  Similarity=0.146  Sum_probs=59.1

Q ss_pred             cccCCCccceeeecccccc-eeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-ccc
Q 038559           11 VIQLLPNLKTLTLWLASKA-KQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DLQ   88 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~~~~-~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl~   88 (137)
                      .++.+++|++|.|.++.-. ..+   ....+.+++|+.|++.++.+.......-+.+++|+.|.+.+|. +..+|. .+.
T Consensus       440 ~~~~l~~L~~L~l~~n~l~~~~~---p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~  515 (570)
T 2z63_A          440 IFNGLSSLEVLKMAGNSFQENFL---PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFD  515 (570)
T ss_dssp             TTTTCTTCCEEECTTCEEGGGEE---CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTT
T ss_pred             hhhcCCcCcEEECcCCcCccccc---hhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc-CCCCCHHHhh
Confidence            3455666666666543311 122   1122468999999999876554322233679999999999874 666654 678


Q ss_pred             CCCCCCEEEEcCCC
Q 038559           89 FVATLKQLQILPLL  102 (137)
Q Consensus        89 ~l~sL~~L~i~~~~  102 (137)
                      ++++|++|++.+++
T Consensus       516 ~l~~L~~L~l~~N~  529 (570)
T 2z63_A          516 RLTSLQKIWLHTNP  529 (570)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             cccCCcEEEecCCc
Confidence            99999999998865

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.09  E-value=1.3e-05  Score=62.69  Aligned_cols=17  Identities=24%  Similarity=0.194  Sum_probs=10.5

Q ss_pred             ccccCCCccceeeeccc
Q 038559           10 LVIQLLPNLKTLTLWLA   26 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~   26 (137)
                      ..++.+++|++|.|.++
T Consensus       141 ~~~~~l~~L~~L~L~~N  157 (452)
T 3zyi_A          141 GAFEYLSKLRELWLRNN  157 (452)
T ss_dssp             TTSSSCTTCCEEECCSC
T ss_pred             hhhcccCCCCEEECCCC
Confidence            34566777777777643

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.09  E-value=7.4e-06  Score=65.67  Aligned_cols=88  Identities=19%  Similarity=0.174  Sum_probs=57.7

Q ss_pred             cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccc-cccccC
Q 038559           11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRML-LEDLQF   89 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~l-p~gl~~   89 (137)
                      .++.+++|++|+|+++. +..++++.+  +++++|++|++.+..+.......-+.+++|+.|.+.+.. +..+ |..+.+
T Consensus       489 ~~~~l~~L~~L~Ls~N~-L~~l~~~~f--~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~  564 (635)
T 4g8a_A          489 IFTELRNLTFLDLSQCQ-LEQLSPTAF--NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQH  564 (635)
T ss_dssp             CCTTCTTCCEEECTTSC-CCEECTTTT--TTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSC-CCBCCSSCTTC
T ss_pred             hhhhccccCEEECCCCc-cCCcChHHH--cCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCc-CCCCCHHHHHh
Confidence            46677788888887553 444422122  367888888888765443322223568899999887764 5544 456777


Q ss_pred             C-CCCCEEEEcCCC
Q 038559           90 V-ATLKQLQILPLL  102 (137)
Q Consensus        90 l-~sL~~L~i~~~~  102 (137)
                      + ++|+.|++.++|
T Consensus       565 l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          565 FPSSLAFLNLTQND  578 (635)
T ss_dssp             CCTTCCEEECTTCC
T ss_pred             hhCcCCEEEeeCCC
Confidence            7 689999997654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.09  E-value=1e-05  Score=63.57  Aligned_cols=36  Identities=22%  Similarity=0.189  Sum_probs=15.2

Q ss_pred             cCCccceEeeccCcccccc-cccccCCCCCCEEEEcCC
Q 038559           65 ALPSLKYLQLHKCLKLRML-LEDLQFVATLKQLQILPL  101 (137)
Q Consensus        65 ~mp~L~~L~i~~c~~l~~l-p~gl~~l~sL~~L~i~~~  101 (137)
                      .+++|+.|.+.++. +..+ |..+..+++|++|++.++
T Consensus       126 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n  162 (477)
T 2id5_A          126 DLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKC  162 (477)
T ss_dssp             TCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESC
T ss_pred             ccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCC
Confidence            34444444444332 2221 223444555555555444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.07  E-value=1.6e-05  Score=62.05  Aligned_cols=16  Identities=31%  Similarity=0.242  Sum_probs=10.2

Q ss_pred             cccCCCccceeeeccc
Q 038559           11 VIQLLPNLKTLTLWLA   26 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~   26 (137)
                      .++.+++|++|.|.+.
T Consensus       131 ~~~~l~~L~~L~L~~N  146 (440)
T 3zyj_A          131 AFVYLSKLKELWLRNN  146 (440)
T ss_dssp             TSCSCSSCCEEECCSC
T ss_pred             HhhccccCceeeCCCC
Confidence            4566777777777643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.07  E-value=8e-06  Score=66.30  Aligned_cols=60  Identities=18%  Similarity=0.183  Sum_probs=30.2

Q ss_pred             CcccccEEEeccccccceeeec-CCcCCccceEeeccCcccccc-cccccCCCCCCEEEEcCCC
Q 038559           41 GFHKLEILIIAFHVLEEWTEIE-EGALPSLKYLQLHKCLKLRML-LEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~~~~~-~g~mp~L~~L~i~~c~~l~~l-p~gl~~l~sL~~L~i~~~~  102 (137)
                      .+++|+.|++.++.+... ... -+.+++|+.|.+.++. +..+ |..+.++++|+.|+++++.
T Consensus       121 ~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~  182 (597)
T 3oja_B          121 NVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNR  182 (597)
T ss_dssp             TCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSC
T ss_pred             CCCCCCEEEeeCCCCCCC-CHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCC
Confidence            455566666655433321 111 1445666666665553 3333 3345566666666665543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.07  E-value=9.1e-06  Score=65.49  Aligned_cols=36  Identities=19%  Similarity=0.045  Sum_probs=17.0

Q ss_pred             cCCccceEeeccCcccccccccccCCC-CCCEEEEcCC
Q 038559           65 ALPSLKYLQLHKCLKLRMLLEDLQFVA-TLKQLQILPL  101 (137)
Q Consensus        65 ~mp~L~~L~i~~c~~l~~lp~gl~~l~-sL~~L~i~~~  101 (137)
                      .+++|+.|.+.++. +..+|.++..++ +|+.|++.++
T Consensus       519 ~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N  555 (606)
T 3vq2_A          519 QLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNN  555 (606)
T ss_dssp             TCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSC
T ss_pred             CCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCC
Confidence            34445555544442 444554444443 3555555443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.06  E-value=2.3e-05  Score=61.53  Aligned_cols=61  Identities=25%  Similarity=0.213  Sum_probs=35.6

Q ss_pred             CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-cccCCCCCCEEEEcCCC
Q 038559           41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DLQFVATLKQLQILPLL  102 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl~~l~sL~~L~i~~~~  102 (137)
                      .+++|+.|.+.+..+.......-+.+++|+.|.+.++. +..+|. .+.++++|+.|.+.++.
T Consensus       126 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~  187 (477)
T 2id5_A          126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLN  187 (477)
T ss_dssp             TCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCC
T ss_pred             ccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCc
Confidence            45666666666543322111122467888888887763 555553 45666777777776654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.04  E-value=7.4e-06  Score=62.03  Aligned_cols=90  Identities=17%  Similarity=0.112  Sum_probs=56.2

Q ss_pred             ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceee-ecCCcCCccceEeeccCccccccc-ccc
Q 038559           10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTE-IEEGALPSLKYLQLHKCLKLRMLL-EDL   87 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~-~~~g~mp~L~~L~i~~c~~l~~lp-~gl   87 (137)
                      ..++.+++|++|+|.++. +..++.+.  .+.+++|++|++.+..+..... ..-+.+++|+.|.+.++..+..++ ..+
T Consensus        94 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~--~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  170 (353)
T 2z80_A           94 DSFSSLGSLEHLDLSYNY-LSNLSSSW--FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF  170 (353)
T ss_dssp             TTTTTCTTCCEEECCSSC-CSSCCHHH--HTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred             hhcCCCCCCCEEECCCCc-CCcCCHhH--hCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc
Confidence            346778888888887543 33342111  2357788888887754432211 122567888888888776565554 467


Q ss_pred             cCCCCCCEEEEcCCC
Q 038559           88 QFVATLKQLQILPLL  102 (137)
Q Consensus        88 ~~l~sL~~L~i~~~~  102 (137)
                      ..+++|++|+++++.
T Consensus       171 ~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          171 AGLTFLEELEIDASD  185 (353)
T ss_dssp             TTCCEEEEEEEEETT
T ss_pred             cCCCCCCEEECCCCC
Confidence            777888888887764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.04  E-value=1e-05  Score=55.94  Aligned_cols=82  Identities=16%  Similarity=0.143  Sum_probs=60.1

Q ss_pred             CccceeeecccccceeccceecCccCcccccEEEeccccccceeeec-CCcCCccceEeeccCccccccccc-ccCCCCC
Q 038559           16 PNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIE-EGALPSLKYLQLHKCLKLRMLLED-LQFVATL   93 (137)
Q Consensus        16 p~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~-~g~mp~L~~L~i~~c~~l~~lp~g-l~~l~sL   93 (137)
                      ++|++|.|.+.. +..++++.  .+.+++|+.|++.+..+... ... -+.+++|+.|.+.+. ++..+|.+ +.++++|
T Consensus        33 ~~L~~L~Ls~N~-l~~~~~~~--~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L  107 (174)
T 2r9u_A           33 TDKQRLWLNNNQ-ITKLEPGV--FDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSL  107 (174)
T ss_dssp             TTCSEEECCSSC-CCCCCTTT--TTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred             CCCcEEEeCCCC-ccccCHHH--hcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCC-ccceeCHHHhccccCC
Confidence            789999998553 44442112  23789999999998655432 222 257899999999875 57888876 8889999


Q ss_pred             CEEEEcCCC
Q 038559           94 KQLQILPLL  102 (137)
Q Consensus        94 ~~L~i~~~~  102 (137)
                      +.|++.+++
T Consensus       108 ~~L~L~~N~  116 (174)
T 2r9u_A          108 THIYLYNNP  116 (174)
T ss_dssp             SEEECCSSC
T ss_pred             CEEEeCCCC
Confidence            999998875

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.04  E-value=1.3e-05  Score=63.43  Aligned_cols=87  Identities=18%  Similarity=0.083  Sum_probs=60.7

Q ss_pred             ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccc-ccccccc
Q 038559           10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLR-MLLEDLQ   88 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~-~lp~gl~   88 (137)
                      ..++.+++|++|+|.++. +..+.++.  .+.+++|++|++.+..+.. +..  ..+++|+.|.+.++.-.. .+|..+.
T Consensus        39 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~--~~~l~~L~~L~Ls~N~l~~-lp~--~~l~~L~~L~L~~N~l~~~~~p~~~~  112 (520)
T 2z7x_B           39 SDILSLSKLRILIISHNR-IQYLDISV--FKFNQELEYLDLSHNKLVK-ISC--HPTVNLKHLDLSFNAFDALPICKEFG  112 (520)
T ss_dssp             HHHTTCTTCCEEECCSSC-CCEEEGGG--GTTCTTCCEEECCSSCCCE-EEC--CCCCCCSEEECCSSCCSSCCCCGGGG
T ss_pred             hhccccccccEEecCCCc-cCCcChHH--hhcccCCCEEecCCCceee-cCc--cccCCccEEeccCCccccccchhhhc
Confidence            457888999999998654 43331112  2368899999998865553 222  278999999998875222 3677888


Q ss_pred             CCCCCCEEEEcCCC
Q 038559           89 FVATLKQLQILPLL  102 (137)
Q Consensus        89 ~l~sL~~L~i~~~~  102 (137)
                      ++++|++|+++++.
T Consensus       113 ~l~~L~~L~L~~n~  126 (520)
T 2z7x_B          113 NMSQLKFLGLSTTH  126 (520)
T ss_dssp             GCTTCCEEEEEESS
T ss_pred             cCCcceEEEecCcc
Confidence            88999999888765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.03  E-value=1.3e-05  Score=61.11  Aligned_cols=87  Identities=20%  Similarity=0.138  Sum_probs=54.5

Q ss_pred             cc-CCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccc-cccccC
Q 038559           12 IQ-LLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRML-LEDLQF   89 (137)
Q Consensus        12 L~-~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~l-p~gl~~   89 (137)
                      +. .+++|++|.|.+.. +..++.+.  ...+++|+.|++.+..+.......-+.+++|+.|.+.++. +..+ |..+..
T Consensus        59 ~~~~l~~L~~L~L~~N~-i~~i~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~  134 (361)
T 2xot_A           59 TPTRLTNLHSLLLSHNH-LNFISSEA--FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFED  134 (361)
T ss_dssp             SSSCCTTCCEEECCSSC-CCEECTTT--TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTT
T ss_pred             hhhcccccCEEECCCCc-CCccChhh--ccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCC
Confidence            44 67788888886443 44442111  2367788888888755443211112467888888887764 4444 556778


Q ss_pred             CCCCCEEEEcCCC
Q 038559           90 VATLKQLQILPLL  102 (137)
Q Consensus        90 l~sL~~L~i~~~~  102 (137)
                      +++|++|+++++.
T Consensus       135 l~~L~~L~L~~N~  147 (361)
T 2xot_A          135 MAQLQKLYLSQNQ  147 (361)
T ss_dssp             CTTCCEEECCSSC
T ss_pred             cccCCEEECCCCc
Confidence            8888888887764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.03  E-value=2e-05  Score=59.46  Aligned_cols=91  Identities=20%  Similarity=0.012  Sum_probs=63.8

Q ss_pred             cccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccccccc
Q 038559            9 ALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQ   88 (137)
Q Consensus         9 l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~   88 (137)
                      ++.|+.+++|+.|.|.+...+..++++.+  +.+++|+.|+|.+..+.......-+.|++|+.|.+.+. ++..+|.++-
T Consensus        24 ip~l~~~~~L~~L~l~~~n~l~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~  100 (347)
T 2ifg_A           24 LHHLPGAENLTELYIENQQHLQHLELRDL--RGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTV  100 (347)
T ss_dssp             TTTSCSCSCCSEEECCSCSSCCEECGGGS--CSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTT
T ss_pred             cCCCCCCCCeeEEEccCCCCCCCcChhHh--ccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHc
Confidence            34488899999999985344666632223  37899999999986554322111256999999999764 5888887654


Q ss_pred             CCCCCCEEEEcCCC
Q 038559           89 FVATLKQLQILPLL  102 (137)
Q Consensus        89 ~l~sL~~L~i~~~~  102 (137)
                      ...+|+.|.+.+++
T Consensus       101 ~~~~L~~l~l~~N~  114 (347)
T 2ifg_A          101 QGLSLQELVLSGNP  114 (347)
T ss_dssp             CSCCCCEEECCSSC
T ss_pred             ccCCceEEEeeCCC
Confidence            44459999997654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.02  E-value=4.5e-05  Score=56.62  Aligned_cols=85  Identities=21%  Similarity=0.206  Sum_probs=41.4

Q ss_pred             ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-ccc
Q 038559           10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DLQ   88 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl~   88 (137)
                      ..++.+++|++|.|.+.. +..++    ..+.+++|++|++.+..+... ....+.+++|+.|.+.++ ++..+|. .+.
T Consensus        49 ~~~~~l~~L~~L~L~~n~-l~~~~----~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~  121 (290)
T 1p9a_G           49 ATLMPYTRLTQLNLDRAE-LTKLQ----VDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFN-RLTSLPLGALR  121 (290)
T ss_dssp             GGGTTCTTCCEEECTTSC-CCEEE----CCSCCTTCCEEECCSSCCSSC-CCCTTTCTTCCEEECCSS-CCCCCCSSTTT
T ss_pred             HHhhcCCCCCEEECCCCc-cCccc----CCCCCCcCCEEECCCCcCCcC-chhhccCCCCCEEECCCC-cCcccCHHHHc
Confidence            346667777777776432 33331    113556666666665433221 122234555555555443 2444442 344


Q ss_pred             CCCCCCEEEEcCC
Q 038559           89 FVATLKQLQILPL  101 (137)
Q Consensus        89 ~l~sL~~L~i~~~  101 (137)
                      ++++|++|+++++
T Consensus       122 ~l~~L~~L~L~~N  134 (290)
T 1p9a_G          122 GLGELQELYLKGN  134 (290)
T ss_dssp             TCTTCCEEECTTS
T ss_pred             CCCCCCEEECCCC
Confidence            5555555555544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.02  E-value=7.8e-06  Score=65.05  Aligned_cols=16  Identities=25%  Similarity=0.235  Sum_probs=10.0

Q ss_pred             cccCCCccceeeeccc
Q 038559           11 VIQLLPNLKTLTLWLA   26 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~   26 (137)
                      .++.+++|++|.|.++
T Consensus        45 ~~~~l~~L~~L~Ls~n   60 (549)
T 2z81_A           45 DLRACANLQVLILKSS   60 (549)
T ss_dssp             TTSSCTTCCEEECTTS
T ss_pred             hhhcCCcccEEECCCC
Confidence            4566666777766643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.01  E-value=1.5e-05  Score=59.64  Aligned_cols=59  Identities=20%  Similarity=0.250  Sum_probs=36.3

Q ss_pred             cccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559           42 FHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        42 f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      +++|++|++.+..+... ....+.+++|+.|.+.++ .+..+|..+..+++|+.|++++++
T Consensus       190 l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          190 FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             CTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred             cccCCEEECCCCcCCcc-hhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCC
Confidence            45566666555433321 122345677777777665 456677777777788888887765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.00  E-value=6.1e-06  Score=68.92  Aligned_cols=85  Identities=20%  Similarity=0.157  Sum_probs=58.8

Q ss_pred             ccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCC
Q 038559           12 IQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVA   91 (137)
Q Consensus        12 L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~   91 (137)
                      +..|++|++|.|.++. +..++.   ..+.+++|+.|+|.+..+.. +....+.|++|+.|.+.++ .+..+|.++.+++
T Consensus       243 ~~~l~~L~~L~Ls~N~-l~~lp~---~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~  316 (727)
T 4b8c_D          243 IFKYDFLTRLYLNGNS-LTELPA---EIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLC  316 (727)
T ss_dssp             GGGCCSCSCCBCTTSC-CSCCCG---GGGGGTTCCEEECTTSCCSS-CCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCT
T ss_pred             hcCCCCCCEEEeeCCc-CcccCh---hhhCCCCCCEEeCcCCcCCc-cChhhcCCCCCCEEECCCC-CCCccChhhhcCC
Confidence            4456667777666432 334421   12467888888888865442 2233467889999999876 5778898899999


Q ss_pred             CCCEEEEcCCC
Q 038559           92 TLKQLQILPLL  102 (137)
Q Consensus        92 sL~~L~i~~~~  102 (137)
                      +|+.|.+++++
T Consensus       317 ~L~~L~L~~N~  327 (727)
T 4b8c_D          317 NLQFLGVEGNP  327 (727)
T ss_dssp             TCCCEECTTSC
T ss_pred             CccEEeCCCCc
Confidence            99999998876

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.00  E-value=9.7e-06  Score=65.96  Aligned_cols=87  Identities=21%  Similarity=0.209  Sum_probs=67.1

Q ss_pred             cccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccc--ccc
Q 038559            9 ALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRML--LED   86 (137)
Q Consensus         9 l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~l--p~g   86 (137)
                      ++.++.|++|+.|.|.++. +..+|.   ..+.+++|+.|++.+..+.. +. ..+.|++|+.|.+.++ ++..+  |..
T Consensus       456 lp~~~~l~~L~~L~Ls~N~-l~~lp~---~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~  528 (567)
T 1dce_A          456 LCHLEQLLLVTHLDLSHNR-LRALPP---ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN-RLQQSAAIQP  528 (567)
T ss_dssp             CCCGGGGTTCCEEECCSSC-CCCCCG---GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS-CCCSSSTTGG
T ss_pred             CcCccccccCcEeecCccc-ccccch---hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCC-CCCCCCCcHH
Confidence            4558899999999998553 445532   23478999999999865544 22 4578999999999876 47776  888


Q ss_pred             ccCCCCCCEEEEcCCC
Q 038559           87 LQFVATLKQLQILPLL  102 (137)
Q Consensus        87 l~~l~sL~~L~i~~~~  102 (137)
                      +..+++|+.|.+++++
T Consensus       529 l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          529 LVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             GGGCTTCCEEECTTSG
T ss_pred             HhcCCCCCEEEecCCc
Confidence            9999999999998876

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.00  E-value=9.5e-06  Score=55.74  Aligned_cols=86  Identities=19%  Similarity=0.109  Sum_probs=50.1

Q ss_pred             ccccCCC-ccceeeecccccceeccceecCccCcccccEEEeccccccceeeecC-CcCCccceEeeccCcccccccc--
Q 038559           10 LVIQLLP-NLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEE-GALPSLKYLQLHKCLKLRMLLE--   85 (137)
Q Consensus        10 ~~L~~Lp-~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~-g~mp~L~~L~i~~c~~l~~lp~--   85 (137)
                      +.+..+. +|++|++.++. +..+    .....+++|++|++.+..+... .... +.+|+|+.|.+.++. +..+|.  
T Consensus        35 ~~~~~~~~~L~~L~Ls~N~-l~~~----~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~-i~~~~~~~  107 (176)
T 1a9n_A           35 ENLGATLDQFDAIDFSDNE-IRKL----DGFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELILTNNS-LVELGDLD  107 (176)
T ss_dssp             CCGGGGTTCCSEEECCSSC-CCEE----CCCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEEECCSCC-CCCGGGGG
T ss_pred             HHhhhcCCCCCEEECCCCC-CCcc----cccccCCCCCEEECCCCccccc-CcchhhcCCCCCEEECCCCc-CCcchhhH
Confidence            3344444 77777776442 3332    1123567777777776544322 1111 457777777776653 566665  


Q ss_pred             cccCCCCCCEEEEcCCC
Q 038559           86 DLQFVATLKQLQILPLL  102 (137)
Q Consensus        86 gl~~l~sL~~L~i~~~~  102 (137)
                      .+.++++|+.|.+.+++
T Consensus       108 ~l~~l~~L~~L~l~~N~  124 (176)
T 1a9n_A          108 PLASLKSLTYLCILRNP  124 (176)
T ss_dssp             GGGGCTTCCEEECCSSG
T ss_pred             hhhcCCCCCEEEecCCC
Confidence            66677778888877765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.99  E-value=1.4e-05  Score=54.88  Aligned_cols=83  Identities=17%  Similarity=0.164  Sum_probs=60.1

Q ss_pred             CCccceeeecccccceeccceecCccCcccccEEEeccccccceeeec-CCcCCccceEeeccCccccccccc-ccCCCC
Q 038559           15 LPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIE-EGALPSLKYLQLHKCLKLRMLLED-LQFVAT   92 (137)
Q Consensus        15 Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~-~g~mp~L~~L~i~~c~~l~~lp~g-l~~l~s   92 (137)
                      .++|++|.|.+.. +..++++.+  ..+++|+.|++.+..+... ... -+.+++|+.|.+.+. ++..+|.+ +.++++
T Consensus        29 ~~~l~~L~L~~N~-i~~~~~~~~--~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~  103 (170)
T 3g39_A           29 PTTTQVLYLYDNQ-ITKLEPGVF--DRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKS  103 (170)
T ss_dssp             CTTCSEEECCSSC-CCCCCTTTT--TTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred             CCCCcEEEcCCCc-CCccChhhh--cCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCC
Confidence            4789999998543 444421122  3789999999998655432 222 257999999999875 57788874 788999


Q ss_pred             CCEEEEcCCC
Q 038559           93 LKQLQILPLL  102 (137)
Q Consensus        93 L~~L~i~~~~  102 (137)
                      |+.|++.+++
T Consensus       104 L~~L~L~~N~  113 (170)
T 3g39_A          104 LTHIWLLNNP  113 (170)
T ss_dssp             CCEEECCSSC
T ss_pred             CCEEEeCCCC
Confidence            9999998865

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.97  E-value=3.6e-05  Score=61.75  Aligned_cols=88  Identities=20%  Similarity=0.178  Sum_probs=61.9

Q ss_pred             ccccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccc--cc
Q 038559            8 SALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRML--LE   85 (137)
Q Consensus         8 ~l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~l--p~   85 (137)
                      +-..++.+++|++|.|.++. +..++++.+  +.+++|++|++.+..+..   +....+++|+.|.+.++. +..+  |.
T Consensus        68 ~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~--~~l~~L~~L~Ls~N~l~~---lp~~~l~~L~~L~Ls~N~-l~~l~~p~  140 (562)
T 3a79_B           68 RMPDISFLSELRVLRLSHNR-IRSLDFHVF--LFNQDLEYLDVSHNRLQN---ISCCPMASLRHLDLSFND-FDVLPVCK  140 (562)
T ss_dssp             CGGGTTTCTTCCEEECCSCC-CCEECTTTT--TTCTTCCEEECTTSCCCE---ECSCCCTTCSEEECCSSC-CSBCCCCG
T ss_pred             ChhhhccCCCccEEECCCCC-CCcCCHHHh--CCCCCCCEEECCCCcCCc---cCccccccCCEEECCCCC-ccccCchH
Confidence            33467888999999998553 444421122  367889999998865542   233379999999998775 5544  46


Q ss_pred             cccCCCCCCEEEEcCCC
Q 038559           86 DLQFVATLKQLQILPLL  102 (137)
Q Consensus        86 gl~~l~sL~~L~i~~~~  102 (137)
                      .+.++++|++|+++++.
T Consensus       141 ~~~~l~~L~~L~L~~n~  157 (562)
T 3a79_B          141 EFGNLTKLTFLGLSAAK  157 (562)
T ss_dssp             GGGGCTTCCEEEEECSB
T ss_pred             hhcccCcccEEecCCCc
Confidence            78889999999998764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.97  E-value=2.2e-05  Score=63.17  Aligned_cols=14  Identities=43%  Similarity=0.266  Sum_probs=7.7

Q ss_pred             ccCCCccceeeecc
Q 038559           12 IQLLPNLKTLTLWL   25 (137)
Q Consensus        12 L~~Lp~L~~L~L~~   25 (137)
                      ++.+++|++|.|.+
T Consensus       421 ~~~l~~L~~L~l~~  434 (606)
T 3t6q_A          421 FQNLHLLKVLNLSH  434 (606)
T ss_dssp             TTTCTTCCEEECTT
T ss_pred             hhCcccCCEEECCC
Confidence            45555555555553

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.96  E-value=1.3e-05  Score=63.73  Aligned_cols=90  Identities=18%  Similarity=0.154  Sum_probs=54.1

Q ss_pred             ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccce-eeecCCcCCccceEeeccCccccccc-ccc
Q 038559           10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEW-TEIEEGALPSLKYLQLHKCLKLRMLL-EDL   87 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~-~~~~~g~mp~L~~L~i~~c~~l~~lp-~gl   87 (137)
                      ..++.+++|++|+|.++. +..++.+.  .+.+++|++|++.+..+... ....-+.+++|+.|.+.++..+..+| ..+
T Consensus        68 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~  144 (549)
T 2z81_A           68 DAFYSLGSLEHLDLSDNH-LSSLSSSW--FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF  144 (549)
T ss_dssp             TTTTTCTTCCEEECTTSC-CCSCCHHH--HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred             hhccccccCCEEECCCCc-cCccCHHH--hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhh
Confidence            346777777777776543 33332111  23567777777776543321 01123567778888877776566665 367


Q ss_pred             cCCCCCCEEEEcCCC
Q 038559           88 QFVATLKQLQILPLL  102 (137)
Q Consensus        88 ~~l~sL~~L~i~~~~  102 (137)
                      .++++|++|++.++.
T Consensus       145 ~~l~~L~~L~L~~n~  159 (549)
T 2z81_A          145 AGLTSLNELEIKALS  159 (549)
T ss_dssp             TTCCEEEEEEEEETT
T ss_pred             hcccccCeeeccCCc
Confidence            777788888877654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=97.95  E-value=1.5e-05  Score=59.90  Aligned_cols=81  Identities=16%  Similarity=0.181  Sum_probs=34.6

Q ss_pred             ccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCC
Q 038559           12 IQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVA   91 (137)
Q Consensus        12 L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~   91 (137)
                      ++.+++|++|.|.++. +..++    ....+++|++|++.++.....  ...+.+++|+.|.+.+| .+..+| .+..++
T Consensus       217 ~~~~~~L~~L~l~~n~-l~~~~----~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~  287 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNK-ITDLS----PLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSN-QISDIS-VLNNLS  287 (347)
T ss_dssp             GGGCTTCCEEECCSSC-CCCCG----GGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS-CCCCCG-GGGGCT
T ss_pred             hhcCCcCCEEEccCCc-cCCCc----chhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCC-ccCCCh-hhcCCC
Confidence            5566666666665442 22221    122445555555554322211  11133444555544444 233332 233444


Q ss_pred             CCCEEEEcCC
Q 038559           92 TLKQLQILPL  101 (137)
Q Consensus        92 sL~~L~i~~~  101 (137)
                      +|++|++++|
T Consensus       288 ~L~~L~L~~n  297 (347)
T 4fmz_A          288 QLNSLFLNNN  297 (347)
T ss_dssp             TCSEEECCSS
T ss_pred             CCCEEECcCC
Confidence            4444444444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.94  E-value=2.4e-05  Score=63.04  Aligned_cols=37  Identities=19%  Similarity=0.119  Sum_probs=20.2

Q ss_pred             cCCccceEeeccCcccccc---cccccCCCCCCEEEEcCCC
Q 038559           65 ALPSLKYLQLHKCLKLRML---LEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        65 ~mp~L~~L~i~~c~~l~~l---p~gl~~l~sL~~L~i~~~~  102 (137)
                      .+++|+.|.+.++. +..+   |..+.++++|++|+++++.
T Consensus       348 ~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~  387 (606)
T 3t6q_A          348 NLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNE  387 (606)
T ss_dssp             TCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCS
T ss_pred             ccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCc
Confidence            45555555555443 2222   4456666677777766653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=97.94  E-value=2.6e-05  Score=58.60  Aligned_cols=16  Identities=38%  Similarity=0.262  Sum_probs=8.7

Q ss_pred             ccccCCCccceeeecc
Q 038559           10 LVIQLLPNLKTLTLWL   25 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~   25 (137)
                      +.++.+++|++|.|.+
T Consensus        60 ~~~~~~~~L~~L~l~~   75 (347)
T 4fmz_A           60 QGIEYLTNLEYLNLNG   75 (347)
T ss_dssp             TTGGGCTTCCEEECCS
T ss_pred             hhhhhcCCccEEEccC
Confidence            3455555666665553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.93  E-value=4.6e-06  Score=57.34  Aligned_cols=90  Identities=20%  Similarity=0.153  Sum_probs=66.2

Q ss_pred             ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeee-cCCcCCccceEeeccCccccccccc--
Q 038559           10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEI-EEGALPSLKYLQLHKCLKLRMLLED--   86 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~-~~g~mp~L~~L~i~~c~~l~~lp~g--   86 (137)
                      +.++.+++|++|.|.++. +..+++..+  ..+++|+.|++.+..+..+..+ ..+.+++|+.|.+.+++ +..+|..  
T Consensus        58 ~~l~~l~~L~~L~Ls~N~-l~~~~~~~~--~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~  133 (176)
T 1a9n_A           58 DGFPLLRRLKTLLVNNNR-ICRIGEGLD--QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRL  133 (176)
T ss_dssp             CCCCCCSSCCEEECCSSC-CCEECSCHH--HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHH
T ss_pred             cccccCCCCCEEECCCCc-ccccCcchh--hcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHH
Confidence            678899999999998654 455521111  4789999999998655432111 23579999999998876 5567764  


Q ss_pred             --ccCCCCCCEEEEcCCCH
Q 038559           87 --LQFVATLKQLQILPLLD  103 (137)
Q Consensus        87 --l~~l~sL~~L~i~~~~~  103 (137)
                        +..+++|+.|++.++..
T Consensus       134 ~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          134 YVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             HHHHHCTTCSEETTEECCH
T ss_pred             HHHHHCCccceeCCCcCCH
Confidence              78899999999998873

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.93  E-value=1.8e-05  Score=64.60  Aligned_cols=61  Identities=13%  Similarity=-0.042  Sum_probs=32.6

Q ss_pred             CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEcCC
Q 038559           41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPL  101 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~  101 (137)
                      .+++|++|++.+..+.......-+.+++|+.|.+.++.-....|..+.++++|++|++.++
T Consensus        95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  155 (680)
T 1ziw_A           95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN  155 (680)
T ss_dssp             TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS
T ss_pred             cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC
Confidence            4556666666654332211111245667777777665422333445666777777776655

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.89  E-value=8.8e-05  Score=50.71  Aligned_cols=84  Identities=19%  Similarity=0.181  Sum_probs=59.6

Q ss_pred             CCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeec-CCcCCccceEeeccCccccccccc-ccCCC
Q 038559           14 LLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIE-EGALPSLKYLQLHKCLKLRMLLED-LQFVA   91 (137)
Q Consensus        14 ~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~-~g~mp~L~~L~i~~c~~l~~lp~g-l~~l~   91 (137)
                      ..++|+.|.|.+.. +..++.+.+  +.+++|++|++.+..+... ... -+.+++|+.|.+.++ ++..+|.. +..++
T Consensus        26 ~~~~l~~L~l~~n~-l~~~~~~~~--~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~  100 (177)
T 2o6r_A           26 IPSSATRLELESNK-LQSLPHGVF--DKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLT  100 (177)
T ss_dssp             CCTTCSEEECCSSC-CCCCCTTTT--TTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred             CCCCCcEEEeCCCc-ccEeCHHHh--cCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCC-CccccCHHHhhCCc
Confidence            35789999998653 444421111  4689999999998655432 122 257999999999876 47777764 67899


Q ss_pred             CCCEEEEcCCC
Q 038559           92 TLKQLQILPLL  102 (137)
Q Consensus        92 sL~~L~i~~~~  102 (137)
                      +|+.|++.++.
T Consensus       101 ~L~~L~l~~N~  111 (177)
T 2o6r_A          101 QLKELALDTNQ  111 (177)
T ss_dssp             TCCEEECCSSC
T ss_pred             ccCEEECcCCc
Confidence            99999998875

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.89  E-value=3.6e-05  Score=57.17  Aligned_cols=15  Identities=20%  Similarity=0.286  Sum_probs=6.8

Q ss_pred             ccCCCCCCEEEEcCC
Q 038559           87 LQFVATLKQLQILPL  101 (137)
Q Consensus        87 l~~l~sL~~L~i~~~  101 (137)
                      +..+++|+.|+++++
T Consensus       196 l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          196 LAGLKNLDVLELFSQ  210 (291)
T ss_dssp             GTTCTTCSEEEEEEE
T ss_pred             hccCCCCCEEECcCC
Confidence            344444444444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=97.88  E-value=3.7e-05  Score=57.50  Aligned_cols=40  Identities=23%  Similarity=0.158  Sum_probs=20.2

Q ss_pred             cccccCCCccceeeecccccceeccceecCccCcccccEEEeccc
Q 038559            9 ALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFH   53 (137)
Q Consensus         9 l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~   53 (137)
                      ++.++.+++|++|.|.++. +..++    ....+++|+.|++.+.
T Consensus        56 l~~~~~l~~L~~L~L~~n~-i~~~~----~~~~l~~L~~L~L~~n   95 (308)
T 1h6u_A           56 IEGVQYLNNLIGLELKDNQ-ITDLA----PLKNLTKITELELSGN   95 (308)
T ss_dssp             CTTGGGCTTCCEEECCSSC-CCCCG----GGTTCCSCCEEECCSC
T ss_pred             chhhhccCCCCEEEccCCc-CCCCh----hHccCCCCCEEEccCC
Confidence            3455666667777666442 33331    1234555555555553

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=97.87  E-value=3.4e-05  Score=57.64  Aligned_cols=13  Identities=23%  Similarity=0.350  Sum_probs=6.2

Q ss_pred             ccCCCccceeeec
Q 038559           12 IQLLPNLKTLTLW   24 (137)
Q Consensus        12 L~~Lp~L~~L~L~   24 (137)
                      ++.+++|++|.|.
T Consensus        81 ~~~l~~L~~L~L~   93 (308)
T 1h6u_A           81 LKNLTKITELELS   93 (308)
T ss_dssp             GTTCCSCCEEECC
T ss_pred             HccCCCCCEEEcc
Confidence            4444444444444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.87  E-value=3.2e-06  Score=63.26  Aligned_cols=61  Identities=18%  Similarity=0.130  Sum_probs=31.4

Q ss_pred             cccccEEEeccc-cccc-eeeecCCcCCccceEeeccCccccc--ccccccCCC-CCCEEEEcCCC
Q 038559           42 FHKLEILIIAFH-VLEE-WTEIEEGALPSLKYLQLHKCLKLRM--LLEDLQFVA-TLKQLQILPLL  102 (137)
Q Consensus        42 f~~Lk~L~l~~~-~~~~-~~~~~~g~mp~L~~L~i~~c~~l~~--lp~gl~~l~-sL~~L~i~~~~  102 (137)
                      +++|++|++.++ .... .+....+.+++|+.|.+.+|+++..  ++..+.+++ +|++|++++|.
T Consensus       141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  206 (336)
T ss_dssp             CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence            555555555553 1111 0001113466666666666644432  455555666 77777776663

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.86  E-value=1e-06  Score=65.94  Aligned_cols=38  Identities=18%  Similarity=0.247  Sum_probs=21.7

Q ss_pred             cCCccceEeeccCccc-ccccccccCCCCCCEEEEcCCC
Q 038559           65 ALPSLKYLQLHKCLKL-RMLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        65 ~mp~L~~L~i~~c~~l-~~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      .+|+|+.|.+.+|..+ ...+..+.++++|++|++++|.
T Consensus       220 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          220 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence            4566666666665533 2334455566666666666664

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.86  E-value=5.8e-05  Score=59.72  Aligned_cols=14  Identities=36%  Similarity=0.268  Sum_probs=7.0

Q ss_pred             cccCCCccceeeec
Q 038559           11 VIQLLPNLKTLTLW   24 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~   24 (137)
                      .++.+++|++|.|.
T Consensus       343 ~~~~l~~L~~L~L~  356 (520)
T 2z7x_B          343 NCGHLTELETLILQ  356 (520)
T ss_dssp             TCCCCSSCCEEECC
T ss_pred             hhccCCCCCEEEcc
Confidence            34455555555554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.86  E-value=2.8e-05  Score=63.73  Aligned_cols=62  Identities=13%  Similarity=0.114  Sum_probs=45.1

Q ss_pred             CcccccEEEeccccccce-----------------eeecCC--cCCccceEeeccCcccccccccccCCCCCCEEEEcCC
Q 038559           41 GFHKLEILIIAFHVLEEW-----------------TEIEEG--ALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPL  101 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~-----------------~~~~~g--~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~  101 (137)
                      .+++|++|++.+..+...                 +...-+  .+++|+.|.+.+|.-...+|..+.++++|++|+++++
T Consensus       204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  283 (636)
T 4eco_A          204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN  283 (636)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred             cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence            577888888887544331                 223335  7888888888888766778888888888888888877


Q ss_pred             C
Q 038559          102 L  102 (137)
Q Consensus       102 ~  102 (137)
                      .
T Consensus       284 ~  284 (636)
T 4eco_A          284 R  284 (636)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.85  E-value=3.4e-06  Score=65.24  Aligned_cols=97  Identities=23%  Similarity=0.259  Sum_probs=61.7

Q ss_pred             CCCCcccccc--CCCccceeeecc---ccc----ceeccceecCccCcccccEEEeccccccc---eeeecCCcCCccce
Q 038559            4 LSENSALVIQ--LLPNLKTLTLWL---ASK----AKQLEKEFCSVGGFHKLEILIIAFHVLEE---WTEIEEGALPSLKY   71 (137)
Q Consensus         4 l~~~~l~~L~--~Lp~L~~L~L~~---~~~----~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~---~~~~~~g~mp~L~~   71 (137)
                      +..+.+..++  .+|+|++|.|+.   .+.    ...+. ..+..+.||+|+.|.+.++....   ...++.+.||+|+.
T Consensus       205 l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~-~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~  283 (362)
T 2ra8_A          205 LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR-PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLET  283 (362)
T ss_dssp             CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG-GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSE
T ss_pred             CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH-HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCE
Confidence            3344444554  789999998852   111    11110 02333569999999997754321   01133467999999


Q ss_pred             EeeccCcccc-----cccccccCCCCCCEEEEcCCC
Q 038559           72 LQLHKCLKLR-----MLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        72 L~i~~c~~l~-----~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      |.+..+ .+.     .++.++.++++|+.|+++.|.
T Consensus       284 LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          284 MDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             EECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             EECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            999654 343     367777889999999998876

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.85  E-value=4.7e-05  Score=56.91  Aligned_cols=87  Identities=16%  Similarity=0.108  Sum_probs=56.1

Q ss_pred             cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCC
Q 038559           11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFV   90 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l   90 (137)
                      .++.+++|++|+|.++. +..++...+ .+.+++|+.|++.+..+...  .....+++|+.|.+.++ ++..+|..+..+
T Consensus       139 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l  213 (317)
T 3o53_A          139 DEGCRSRVQYLDLKLNE-IDTVNFAEL-AASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSN-KLAFMGPEFQSA  213 (317)
T ss_dssp             CTGGGSSEEEEECTTSC-CCEEEGGGG-GGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSS-CCCEECGGGGGG
T ss_pred             hhhccCCCCEEECCCCC-CCcccHHHH-hhccCcCCEEECCCCcCccc--ccccccccCCEEECCCC-cCCcchhhhccc
Confidence            45567777777776443 222210011 12467888888887654432  22235888888888776 467777778888


Q ss_pred             CCCCEEEEcCCC
Q 038559           91 ATLKQLQILPLL  102 (137)
Q Consensus        91 ~sL~~L~i~~~~  102 (137)
                      ++|++|+++++.
T Consensus       214 ~~L~~L~L~~N~  225 (317)
T 3o53_A          214 AGVTWISLRNNK  225 (317)
T ss_dssp             TTCSEEECTTSC
T ss_pred             CcccEEECcCCc
Confidence            899999998875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.83  E-value=6.5e-05  Score=61.33  Aligned_cols=89  Identities=16%  Similarity=0.173  Sum_probs=55.2

Q ss_pred             ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccc-cccc
Q 038559           10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLL-EDLQ   88 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp-~gl~   88 (137)
                      ..++++++|++|+|.++. +..+.++.+  +.+++|++|++.+..+.......-+.+++|+.|.+.++. +..+| ..+.
T Consensus        43 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~~--~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~  118 (680)
T 1ziw_A           43 ANFTRYSQLTSLDVGFNT-ISKLEPELC--QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFV  118 (680)
T ss_dssp             GGGGGGTTCSEEECCSSC-CCCCCTTHH--HHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTT
T ss_pred             HHHhCCCcCcEEECCCCc-cCccCHHHH--hcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc-cCccChhHcc
Confidence            346677777777776442 333311111  256788888887754432211113567888888887764 55555 4678


Q ss_pred             CCCCCCEEEEcCCC
Q 038559           89 FVATLKQLQILPLL  102 (137)
Q Consensus        89 ~l~sL~~L~i~~~~  102 (137)
                      ++++|++|+++++.
T Consensus       119 ~l~~L~~L~Ls~n~  132 (680)
T 1ziw_A          119 KQKNLITLDLSHNG  132 (680)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             ccCCCCEEECCCCc
Confidence            88889999888764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.83  E-value=4.1e-05  Score=60.91  Aligned_cols=59  Identities=19%  Similarity=0.220  Sum_probs=32.9

Q ss_pred             cccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559           42 FHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        42 f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      +++|+.|++.+..+... ....+.+++|+.|.+.++. +..+|..+..+++|+.|++.+++
T Consensus       190 l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          190 FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG  248 (487)
T ss_dssp             CTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred             CCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCC
Confidence            44555555554332221 1223456666666666543 55667666677777777777665

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.80  E-value=4.3e-05  Score=62.65  Aligned_cols=34  Identities=26%  Similarity=0.298  Sum_probs=14.6

Q ss_pred             CCccceEeeccCcccccccccccCCCCCCEEEEcCC
Q 038559           66 LPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPL  101 (137)
Q Consensus        66 mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~  101 (137)
                      +++|+.|.+.+| .+..+| .+.++++|+.|.+.++
T Consensus       174 l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          174 LTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             CTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSE
T ss_pred             CCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCC
Confidence            444444444433 233332 2444555555555443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.80  E-value=3.1e-05  Score=51.48  Aligned_cols=82  Identities=22%  Similarity=0.115  Sum_probs=61.1

Q ss_pred             CCCccceeeecccccce--eccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccc-ccccccCC
Q 038559           14 LLPNLKTLTLWLASKAK--QLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRM-LLEDLQFV   90 (137)
Q Consensus        14 ~Lp~L~~L~L~~~~~~~--~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~-lp~gl~~l   90 (137)
                      ..++|+.|.+.++. +.  .++   ...+.+++|+.|++.++.+...  ...+.+++|+.|.+.++. +.. +|..+.++
T Consensus        15 ~~~~l~~L~l~~n~-l~~~~~~---~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l   87 (149)
T 2je0_A           15 TPSDVKELVLDNSR-SNEGKLE---GLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNR-VSGGLEVLAEKC   87 (149)
T ss_dssp             CGGGCSEEECTTCB-CBTTBCC---SCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSC-CCSCTHHHHHHC
T ss_pred             CCccCeEEEccCCc-CChhHHH---HHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCc-ccchHHHHhhhC
Confidence            46889999998664 33  442   1224789999999998655432  233679999999998875 444 77777779


Q ss_pred             CCCCEEEEcCCC
Q 038559           91 ATLKQLQILPLL  102 (137)
Q Consensus        91 ~sL~~L~i~~~~  102 (137)
                      ++|++|+++++.
T Consensus        88 ~~L~~L~ls~N~   99 (149)
T 2je0_A           88 PNLTHLNLSGNK   99 (149)
T ss_dssp             TTCCEEECTTSC
T ss_pred             CCCCEEECCCCc
Confidence            999999999876

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.80  E-value=3.8e-05  Score=56.99  Aligned_cols=85  Identities=18%  Similarity=0.176  Sum_probs=63.6

Q ss_pred             cccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccccccc
Q 038559            9 ALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQ   88 (137)
Q Consensus         9 l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~   88 (137)
                      ++.++.+++|++|.|.++. +..+    .....+++|+.|++.++.+...  ...+.+++|+.|.+.+| .+..++. +.
T Consensus       105 ~~~l~~l~~L~~L~L~~n~-i~~~----~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N-~l~~~~~-l~  175 (291)
T 1h6t_A          105 LSSLKDLKKLKSLSLEHNG-ISDI----NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN-QISDIVP-LA  175 (291)
T ss_dssp             GGGGTTCTTCCEEECTTSC-CCCC----GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS-CCCCCGG-GT
T ss_pred             ChhhccCCCCCEEECCCCc-CCCC----hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCC-ccccchh-hc
Confidence            5668999999999998653 3333    1234689999999998654432  22367899999999887 4666665 88


Q ss_pred             CCCCCCEEEEcCCC
Q 038559           89 FVATLKQLQILPLL  102 (137)
Q Consensus        89 ~l~sL~~L~i~~~~  102 (137)
                      .+++|++|+++++.
T Consensus       176 ~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          176 GLTKLQNLYLSKNH  189 (291)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             CCCccCEEECCCCc
Confidence            89999999998875

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.79  E-value=9.4e-05  Score=51.54  Aligned_cols=83  Identities=14%  Similarity=0.053  Sum_probs=58.1

Q ss_pred             ccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-cccCCCCCCE
Q 038559           17 NLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DLQFVATLKQ   95 (137)
Q Consensus        17 ~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl~~l~sL~~   95 (137)
                      +|++|.+.+.. +..++... ..+.+++|++|++.+..+.......-+.+++|+.|.+.+.. +..+|. .+.++++|++
T Consensus        30 ~l~~L~l~~n~-i~~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~  106 (192)
T 1w8a_A           30 HTTELLLNDNE-LGRISSDG-LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKT  106 (192)
T ss_dssp             TCSEEECCSCC-CCSBCCSC-SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCE
T ss_pred             CCCEEECCCCc-CCccCCcc-ccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCE
Confidence            89999998553 44442110 02478999999999865543322223678999999998764 666654 5788999999


Q ss_pred             EEEcCCC
Q 038559           96 LQILPLL  102 (137)
Q Consensus        96 L~i~~~~  102 (137)
                      |+++++.
T Consensus       107 L~L~~N~  113 (192)
T 1w8a_A          107 LNLYDNQ  113 (192)
T ss_dssp             EECCSSC
T ss_pred             EECCCCc
Confidence            9998875

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.78  E-value=0.00011  Score=58.98  Aligned_cols=35  Identities=23%  Similarity=0.456  Sum_probs=20.5

Q ss_pred             CccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559           67 PSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        67 p~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      ++|+.|.+.++ +++.+|.++.++++|++|+++++.
T Consensus       450 ~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~  484 (562)
T 3a79_B          450 PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ  484 (562)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC
T ss_pred             CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC
Confidence            45666666554 355566655566666666665553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.78  E-value=5.7e-05  Score=59.33  Aligned_cols=84  Identities=15%  Similarity=0.193  Sum_probs=44.9

Q ss_pred             cccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccccccc
Q 038559            9 ALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQ   88 (137)
Q Consensus         9 l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~   88 (137)
                      ++.++.+++|++|+|.++. +..++    ....+++|+.|.+.++......  ..+.+++|+.|.+.+| .+..+|. +.
T Consensus        61 l~~~~~l~~L~~L~Ls~n~-l~~~~----~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n-~l~~~~~-~~  131 (466)
T 1o6v_A           61 IDGVEYLNNLTQINFSNNQ-LTDIT----PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNN-QITDIDP-LK  131 (466)
T ss_dssp             CTTGGGCTTCCEEECCSSC-CCCCG----GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSS-CCCCCGG-GT
T ss_pred             CcchhhhcCCCEEECCCCc-cCCch----hhhccccCCEEECCCCccccCh--hhcCCCCCCEEECCCC-CCCCChH-Hc
Confidence            4556677778888777543 33331    1335666666666654333221  1345666666666554 2444443 45


Q ss_pred             CCCCCCEEEEcCC
Q 038559           89 FVATLKQLQILPL  101 (137)
Q Consensus        89 ~l~sL~~L~i~~~  101 (137)
                      ++++|++|+++++
T Consensus       132 ~l~~L~~L~l~~n  144 (466)
T 1o6v_A          132 NLTNLNRLELSSN  144 (466)
T ss_dssp             TCTTCSEEEEEEE
T ss_pred             CCCCCCEEECCCC
Confidence            5555555555443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.77  E-value=5.2e-05  Score=56.75  Aligned_cols=61  Identities=18%  Similarity=0.174  Sum_probs=41.2

Q ss_pred             CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559           41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      .+++|+.|++.+..+.......-+.+++|+.|.+.++ .+..+|.++..+++|++|++.+++
T Consensus       214 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          214 GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN  274 (330)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC
T ss_pred             CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc
Confidence            4566777777664433221111245788888888776 466788888888888888888765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.76  E-value=4.2e-05  Score=63.87  Aligned_cols=87  Identities=18%  Similarity=0.055  Sum_probs=63.7

Q ss_pred             ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccC
Q 038559           10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQF   89 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~   89 (137)
                      ..+..+++|+.|+|.++. +..++...   ..+++|+.|+|.+..+.. +....+.|++|+.|.+.++. +..+|..+.+
T Consensus       218 ~~~~~l~~L~~L~Ls~n~-l~~l~~~~---~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~  291 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQ-IFNISANI---FKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNR-LTSLPAELGS  291 (727)
T ss_dssp             ----CCCCCCEEECTTSC-CSCCCGGG---GGCCSCSCCBCTTSCCSC-CCGGGGGGTTCCEEECTTSC-CSSCCSSGGG
T ss_pred             hhhccCCCCcEEECCCCC-CCCCChhh---cCCCCCCEEEeeCCcCcc-cChhhhCCCCCCEEeCcCCc-CCccChhhcC
Confidence            346788999999998654 44553222   368999999999865542 22334679999999998875 7789999999


Q ss_pred             CCCCCEEEEcCCC
Q 038559           90 VATLKQLQILPLL  102 (137)
Q Consensus        90 l~sL~~L~i~~~~  102 (137)
                      +++|++|.++++.
T Consensus       292 l~~L~~L~L~~N~  304 (727)
T 4b8c_D          292 CFQLKYFYFFDNM  304 (727)
T ss_dssp             GTTCSEEECCSSC
T ss_pred             CCCCCEEECCCCC
Confidence            9999999998874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.75  E-value=4.2e-05  Score=65.33  Aligned_cols=20  Identities=25%  Similarity=0.114  Sum_probs=9.2

Q ss_pred             cccccccCCCCCCEEEEcCC
Q 038559           82 MLLEDLQFVATLKQLQILPL  101 (137)
Q Consensus        82 ~lp~gl~~l~sL~~L~i~~~  101 (137)
                      .+|..+.++++|++|.+++|
T Consensus       797 ~ip~~l~~L~~L~~L~Ls~N  816 (876)
T 4ecn_A          797 QWPTGITTCPSLIQLQIGSN  816 (876)
T ss_dssp             CCCTTGGGCSSCCEEECCSS
T ss_pred             cChHHHhcCCCCCEEECCCC
Confidence            34444444444444444444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.75  E-value=6.6e-05  Score=54.96  Aligned_cols=37  Identities=22%  Similarity=0.272  Sum_probs=20.3

Q ss_pred             CcCCccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559           64 GALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        64 g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      +.+++|+.|.+.++. ++.+| .+..+++|+.|+++++.
T Consensus       125 ~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~  161 (263)
T 1xeu_A          125 IHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNE  161 (263)
T ss_dssp             TTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSC
T ss_pred             cCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCc
Confidence            345556666555442 44444 35556666666666554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.75  E-value=0.00011  Score=55.04  Aligned_cols=40  Identities=25%  Similarity=0.218  Sum_probs=20.5

Q ss_pred             cccCCCccceeeecccccceeccceecCccCcccccEEEeccc
Q 038559           11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFH   53 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~   53 (137)
                      .++.+++|++|.|.++. +..+.++.  .+.+++|++|++.+.
T Consensus        71 ~~~~l~~L~~L~L~~n~-l~~~~~~~--~~~l~~L~~L~Ls~n  110 (330)
T 1xku_A           71 DFKNLKNLHTLILINNK-ISKISPGA--FAPLVKLERLYLSKN  110 (330)
T ss_dssp             TTTTCTTCCEEECCSSC-CCCBCTTT--TTTCTTCCEEECCSS
T ss_pred             hhccCCCCCEEECCCCc-CCeeCHHH--hcCCCCCCEEECCCC
Confidence            46667777777776432 22221101  124566666666553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.73  E-value=4.9e-05  Score=62.33  Aligned_cols=85  Identities=18%  Similarity=0.164  Sum_probs=64.0

Q ss_pred             cccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccccccc
Q 038559            9 ALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQ   88 (137)
Q Consensus         9 l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~   88 (137)
                      ++.++.|++|+.|.|.++. +..+    .....+++|+.|.+.++.+...  ...+.+++|+.|.+.+|. +..++. +.
T Consensus       102 l~~l~~l~~L~~L~Ls~N~-l~~l----~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~-l~~~~~-l~  172 (605)
T 1m9s_A          102 LSSLKDLKKLKSLSLEHNG-ISDI----NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQ-ISDIVP-LA  172 (605)
T ss_dssp             CTTSTTCTTCCEEECTTSC-CCCC----GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSC-CCCCGG-GT
T ss_pred             ChhhccCCCCCEEEecCCC-CCCC----ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCc-CCCchh-hc
Confidence            4678899999999998654 3333    1234789999999998655432  233679999999998874 666655 88


Q ss_pred             CCCCCCEEEEcCCC
Q 038559           89 FVATLKQLQILPLL  102 (137)
Q Consensus        89 ~l~sL~~L~i~~~~  102 (137)
                      .+++|++|.+++|.
T Consensus       173 ~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          173 GLTKLQNLYLSKNH  186 (605)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             cCCCCCEEECcCCC
Confidence            89999999998875

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.73  E-value=0.00015  Score=50.71  Aligned_cols=82  Identities=12%  Similarity=0.088  Sum_probs=58.3

Q ss_pred             CccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-cccCCCCCC
Q 038559           16 PNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DLQFVATLK   94 (137)
Q Consensus        16 p~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl~~l~sL~   94 (137)
                      ++|++|.|.+.. +..++   .....+++|+.|++.+..+.....-.-+.+++|+.|.+.+.. +..+|. .+..+++|+
T Consensus        31 ~~l~~L~L~~n~-i~~ip---~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~  105 (193)
T 2wfh_A           31 RDVTELYLDGNQ-FTLVP---KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLR  105 (193)
T ss_dssp             TTCCEEECCSSC-CCSCC---GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCC
T ss_pred             CCCCEEECCCCc-CchhH---HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCC
Confidence            589999998543 44442   122468999999999865543211113568999999998764 666665 688899999


Q ss_pred             EEEEcCCC
Q 038559           95 QLQILPLL  102 (137)
Q Consensus        95 ~L~i~~~~  102 (137)
                      .|+++++.
T Consensus       106 ~L~L~~N~  113 (193)
T 2wfh_A          106 LLSLHGND  113 (193)
T ss_dssp             EEECCSSC
T ss_pred             EEECCCCC
Confidence            99998875

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.73  E-value=5.3e-05  Score=62.03  Aligned_cols=53  Identities=21%  Similarity=0.150  Sum_probs=23.3

Q ss_pred             cccEEEeccccccceeeecCC--cCCccceEeeccCcccccccccccCCCCCCEEEE
Q 038559           44 KLEILIIAFHVLEEWTEIEEG--ALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQI   98 (137)
Q Consensus        44 ~Lk~L~l~~~~~~~~~~~~~g--~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i   98 (137)
                      +|+.|++.+..+.. +....+  .+++|+.|.+.++. +..+|..+.++++|+.|++
T Consensus       489 ~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L  543 (636)
T 4eco_A          489 LLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGI  543 (636)
T ss_dssp             GCCEEECCSSCCCB-CCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEEC
T ss_pred             CccEEECcCCcCCc-cChhhhhccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEEC
Confidence            55555555533321 111112  45555555554432 3334444444555555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.72  E-value=0.00018  Score=56.80  Aligned_cols=79  Identities=22%  Similarity=0.149  Sum_probs=39.1

Q ss_pred             cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCC
Q 038559           11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFV   90 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l   90 (137)
                      .++.+++|++|.|.++. +..+     +.+.+++|++|++.+..+...   ..+.+++|+.|.+.++ ++..+|  +.++
T Consensus        59 ~l~~l~~L~~L~Ls~n~-l~~~-----~~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L~L~~N-~l~~l~--~~~l  126 (457)
T 3bz5_A           59 GIEKLTGLTKLICTSNN-ITTL-----DLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTN-KLTKLD--VSQN  126 (457)
T ss_dssp             TGGGCTTCSEEECCSSC-CSCC-----CCTTCTTCSEEECCSSCCSCC---CCTTCTTCCEEECCSS-CCSCCC--CTTC
T ss_pred             hhcccCCCCEEEccCCc-CCeE-----ccccCCCCCEEECcCCCCcee---ecCCCCcCCEEECCCC-cCCeec--CCCC
Confidence            45556666666665332 2222     123455666666655433221   2345666666666554 244443  4455


Q ss_pred             CCCCEEEEcCC
Q 038559           91 ATLKQLQILPL  101 (137)
Q Consensus        91 ~sL~~L~i~~~  101 (137)
                      ++|++|+++++
T Consensus       127 ~~L~~L~l~~N  137 (457)
T 3bz5_A          127 PLLTYLNCARN  137 (457)
T ss_dssp             TTCCEEECTTS
T ss_pred             CcCCEEECCCC
Confidence            55555555544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.71  E-value=0.00015  Score=54.35  Aligned_cols=85  Identities=19%  Similarity=0.158  Sum_probs=47.7

Q ss_pred             cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-cccC
Q 038559           11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DLQF   89 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl~~   89 (137)
                      .++++++|++|.|.++. +..+.++.  .+.+++|+.|++.+..+..   +.....++|+.|.+.++. +..+|. .+.+
T Consensus        73 ~~~~l~~L~~L~L~~n~-l~~~~~~~--~~~l~~L~~L~L~~n~l~~---l~~~~~~~L~~L~l~~n~-i~~~~~~~~~~  145 (332)
T 2ft3_A           73 DFKGLQHLYALVLVNNK-ISKIHEKA--FSPLRKLQKLYISKNHLVE---IPPNLPSSLVELRIHDNR-IRKVPKGVFSG  145 (332)
T ss_dssp             TTTTCTTCCEEECCSSC-CCEECGGG--STTCTTCCEEECCSSCCCS---CCSSCCTTCCEEECCSSC-CCCCCSGGGSS
T ss_pred             HhhCCCCCcEEECCCCc-cCccCHhH--hhCcCCCCEEECCCCcCCc---cCccccccCCEEECCCCc-cCccCHhHhCC
Confidence            45667777777776443 33331111  1356677777776643331   222334677777776543 445554 3667


Q ss_pred             CCCCCEEEEcCCC
Q 038559           90 VATLKQLQILPLL  102 (137)
Q Consensus        90 l~sL~~L~i~~~~  102 (137)
                      +++|++|++.++.
T Consensus       146 l~~L~~L~l~~n~  158 (332)
T 2ft3_A          146 LRNMNCIEMGGNP  158 (332)
T ss_dssp             CSSCCEEECCSCC
T ss_pred             CccCCEEECCCCc
Confidence            7777877777664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.71  E-value=9.6e-05  Score=58.77  Aligned_cols=87  Identities=16%  Similarity=0.108  Sum_probs=55.1

Q ss_pred             cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCC
Q 038559           11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFV   90 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l   90 (137)
                      .++.+++|++|+|+++. +..++...+ .+.+++|+.|++.++.+...  .....+++|+.|.+.++ .+..+|..+..+
T Consensus       139 ~~~~l~~L~~L~Ls~N~-l~~~~~~~l-~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l  213 (487)
T 3oja_A          139 DEGCRSRVQYLDLKLNE-IDTVNFAEL-AASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSN-KLAFMGPEFQSA  213 (487)
T ss_dssp             CGGGGSSEEEEECTTSC-CCEEEGGGG-GGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSS-CCCEECGGGGGG
T ss_pred             hhcCCCCCCEEECCCCC-CCCcChHHH-hhhCCcccEEecCCCccccc--cccccCCCCCEEECCCC-CCCCCCHhHcCC
Confidence            45667777777776443 222200011 12467888888887554432  22345888888888776 367777778888


Q ss_pred             CCCCEEEEcCCC
Q 038559           91 ATLKQLQILPLL  102 (137)
Q Consensus        91 ~sL~~L~i~~~~  102 (137)
                      ++|+.|+++++.
T Consensus       214 ~~L~~L~Ls~N~  225 (487)
T 3oja_A          214 AGVTWISLRNNK  225 (487)
T ss_dssp             TTCSEEECTTSC
T ss_pred             CCccEEEecCCc
Confidence            889999988765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.67  E-value=0.00014  Score=53.26  Aligned_cols=35  Identities=17%  Similarity=0.174  Sum_probs=15.6

Q ss_pred             cCCccceEeeccCcccccccccccCCCCCCEEEEcCC
Q 038559           65 ALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPL  101 (137)
Q Consensus        65 ~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~  101 (137)
                      .+++|+.|.+.++. +..+ ..+..+++|+.|+++++
T Consensus       148 ~l~~L~~L~L~~N~-i~~~-~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          148 FLSKLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             GCTTCCEEECTTSC-CCBC-TTSTTCCCCCEEEEEEE
T ss_pred             cCCCCCEEECCCCc-Ccch-HHhccCCCCCEEeCCCC
Confidence            34555555554432 2222 33444455555555443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.64  E-value=8.2e-05  Score=56.42  Aligned_cols=79  Identities=20%  Similarity=0.203  Sum_probs=54.2

Q ss_pred             CccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCE
Q 038559           16 PNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQ   95 (137)
Q Consensus        16 p~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~   95 (137)
                      ++|+.|.+.+...+..++.+.|  ..+++|+.|++++..+.   .+..+++.+|+.|.+.++.+++.+|. +.++++|+.
T Consensus       177 ~~L~~l~l~~~n~l~~i~~~~f--~~l~~L~~LdLs~N~l~---~lp~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~  250 (350)
T 4ay9_X          177 TQLDELNLSDNNNLEELPNDVF--HGASGPVILDISRTRIH---SLPSYGLENLKKLRARSTYNLKKLPT-LEKLVALME  250 (350)
T ss_dssp             EEEEEEECTTCTTCCCCCTTTT--TTEECCSEEECTTSCCC---CCCSSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCE
T ss_pred             cchhHHhhccCCcccCCCHHHh--ccCcccchhhcCCCCcC---ccChhhhccchHhhhccCCCcCcCCC-chhCcChhh
Confidence            4444444443333444422222  35688888998876544   24456789999999999999999995 888999999


Q ss_pred             EEEcC
Q 038559           96 LQILP  100 (137)
Q Consensus        96 L~i~~  100 (137)
                      +++..
T Consensus       251 l~l~~  255 (350)
T 4ay9_X          251 ASLTY  255 (350)
T ss_dssp             EECSC
T ss_pred             CcCCC
Confidence            99854

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.61  E-value=0.00011  Score=57.64  Aligned_cols=36  Identities=17%  Similarity=0.210  Sum_probs=18.7

Q ss_pred             CcCCccceEeeccCcccccccccccCCCCCCEEEEcCC
Q 038559           64 GALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPL  101 (137)
Q Consensus        64 g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~  101 (137)
                      +.+++|+.|.+.+|. +...+. +.++++|++|.+.+|
T Consensus       350 ~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n  385 (466)
T 1o6v_A          350 ANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQ  385 (466)
T ss_dssp             TTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCE
T ss_pred             ccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCC
Confidence            345555555555553 222222 555666666666554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.61  E-value=0.00023  Score=59.97  Aligned_cols=89  Identities=22%  Similarity=0.410  Sum_probs=53.9

Q ss_pred             ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-ccc
Q 038559           10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DLQ   88 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl~   88 (137)
                      ..++.+++|+.|.|.++. +..+.++.  ..++++|+.|++.+..+.......-+.+++|+.|.+.++ .+..++. .+.
T Consensus       284 ~~~~~l~~L~~L~L~~n~-i~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~  359 (844)
T 3j0a_A          284 RVFETLKDLKVLNLAYNK-INKIADEA--FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFK  359 (844)
T ss_dssp             CCSSSCCCCCEEEEESCC-CCEECTTT--TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSC
T ss_pred             hhhhcCCCCCEEECCCCc-CCCCChHH--hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCC-CCCccChhhhc
Confidence            345677777777776443 33331111  236778888888775443322223356788888888766 3555544 466


Q ss_pred             CCCCCCEEEEcCCC
Q 038559           89 FVATLKQLQILPLL  102 (137)
Q Consensus        89 ~l~sL~~L~i~~~~  102 (137)
                      ++++|+.|.++++.
T Consensus       360 ~l~~L~~L~Ls~N~  373 (844)
T 3j0a_A          360 FLEKLQTLDLRDNA  373 (844)
T ss_dssp             SCCCCCEEEEETCC
T ss_pred             CCCCCCEEECCCCC
Confidence            77788888877664

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.58  E-value=0.00016  Score=54.85  Aligned_cols=84  Identities=24%  Similarity=0.250  Sum_probs=55.2

Q ss_pred             CccceeeecccccceeccceecCccCcccccEEEeccccccceeeecC-CcCCccceEeeccCcccccccc-cccCCCCC
Q 038559           16 PNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEE-GALPSLKYLQLHKCLKLRMLLE-DLQFVATL   93 (137)
Q Consensus        16 p~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~-g~mp~L~~L~i~~c~~l~~lp~-gl~~l~sL   93 (137)
                      ++|++|.|.+.. +..++++.|  .++++|++|++.+....+.+.... ..+++|..+.+..+.++..+|. .+.++++|
T Consensus        30 ~~l~~L~Ls~N~-i~~i~~~~f--~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L  106 (350)
T 4ay9_X           30 RNAIELRFVLTK-LRVIQKGAF--SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL  106 (350)
T ss_dssp             TTCSEEEEESCC-CSEECTTSS--TTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred             CCCCEEEccCCc-CCCcCHHHH--cCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence            478899887543 666633223  367889999998865544321111 3466777776767777877754 56788888


Q ss_pred             CEEEEcCCC
Q 038559           94 KQLQILPLL  102 (137)
Q Consensus        94 ~~L~i~~~~  102 (137)
                      +.|.+.++.
T Consensus       107 ~~L~l~~n~  115 (350)
T 4ay9_X          107 QYLLISNTG  115 (350)
T ss_dssp             CEEEEEEEC
T ss_pred             ccccccccc
Confidence            888887654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.55  E-value=3.4e-05  Score=65.84  Aligned_cols=38  Identities=13%  Similarity=-0.102  Sum_probs=18.7

Q ss_pred             CcccccEEEeccccccceeeecCCcCCccceEeeccCc
Q 038559           41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCL   78 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~   78 (137)
                      .+++|+.|.+.++.+...+...-+.|++|+.|.+.++.
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence            45666666666543332222222445555555555443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.55  E-value=7.4e-05  Score=56.02  Aligned_cols=61  Identities=20%  Similarity=0.159  Sum_probs=37.9

Q ss_pred             CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559           41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      .+++|+.|++.+..+.......-+.+++|+.|.+.++ ++..+|.++..+++|+.|++++++
T Consensus       215 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~  275 (332)
T 2ft3_A          215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNN  275 (332)
T ss_dssp             TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSC
T ss_pred             CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCC
Confidence            4566777777664333221111245777777777765 366777777777777777777654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.53  E-value=3.9e-05  Score=53.75  Aligned_cols=82  Identities=15%  Similarity=0.123  Sum_probs=55.0

Q ss_pred             ccceeeecccccceeccceecCccCcccccEEEecccccc-ceeeec-CCcC----CccceEeeccCccccccc-ccccC
Q 038559           17 NLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLE-EWTEIE-EGAL----PSLKYLQLHKCLKLRMLL-EDLQF   89 (137)
Q Consensus        17 ~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~-~~~~~~-~g~m----p~L~~L~i~~c~~l~~lp-~gl~~   89 (137)
                      +|+.|+|++|. +...+  ...-.++++|+.|.+.+|... .. .+. .+.+    ++|+.|.+.+|++++.-- ..+.+
T Consensus        62 ~L~~LDLs~~~-Itd~G--L~~L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~  137 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIG--FDHMEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH  137 (176)
T ss_dssp             CEEEEEEESCC-CCGGG--GGGGTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred             eEeEEeCcCCC-ccHHH--HHHhcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence            58999998775 32221  112247999999999987432 11 010 1233    589999999999874311 23567


Q ss_pred             CCCCCEEEEcCCC
Q 038559           90 VATLKQLQILPLL  102 (137)
Q Consensus        90 l~sL~~L~i~~~~  102 (137)
                      +++|++|.+++|+
T Consensus       138 ~~~L~~L~L~~c~  150 (176)
T 3e4g_A          138 FRNLKYLFLSDLP  150 (176)
T ss_dssp             CTTCCEEEEESCT
T ss_pred             CCCCCEEECCCCC
Confidence            8999999999998

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.48  E-value=0.00015  Score=53.88  Aligned_cols=87  Identities=15%  Similarity=0.109  Sum_probs=58.6

Q ss_pred             ccCCCccceeeecccccceeccceecC-ccCcccccEEEeccccccceeeecCCc---CCccceEeeccCcccccccccc
Q 038559           12 IQLLPNLKTLTLWLASKAKQLEKEFCS-VGGFHKLEILIIAFHVLEEWTEIEEGA---LPSLKYLQLHKCLKLRMLLEDL   87 (137)
Q Consensus        12 L~~Lp~L~~L~L~~~~~~~~l~~~~~~-~~~f~~Lk~L~l~~~~~~~~~~~~~g~---mp~L~~L~i~~c~~l~~lp~gl   87 (137)
                      ++.+|+|++|.|.++. +..++..... .+.+++|++|++.+..+........+.   +++|+.|.+.++ +++.+|.++
T Consensus       193 ~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~  270 (310)
T 4glp_A          193 PHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGL  270 (310)
T ss_dssp             TTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCC
T ss_pred             hhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhh
Confidence            4689999999998653 3333110110 135689999999986554331111233   379999999776 477888877


Q ss_pred             cCCCCCCEEEEcCCC
Q 038559           88 QFVATLKQLQILPLL  102 (137)
Q Consensus        88 ~~l~sL~~L~i~~~~  102 (137)
                      .  ++|++|+++++.
T Consensus       271 ~--~~L~~L~Ls~N~  283 (310)
T 4glp_A          271 P--AKLRVLDLSSNR  283 (310)
T ss_dssp             C--SCCSCEECCSCC
T ss_pred             c--CCCCEEECCCCc
Confidence            3  799999998876

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.47  E-value=0.00013  Score=54.45  Aligned_cols=39  Identities=26%  Similarity=0.257  Sum_probs=17.7

Q ss_pred             CcCCccceEeeccCccccc--ccccc--cCCCCCCEEEEcCCC
Q 038559           64 GALPSLKYLQLHKCLKLRM--LLEDL--QFVATLKQLQILPLL  102 (137)
Q Consensus        64 g~mp~L~~L~i~~c~~l~~--lp~gl--~~l~sL~~L~i~~~~  102 (137)
                      +.+++|+.|.+.++.-...  +|..+  ..+++|++|+++++.
T Consensus       170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~  212 (312)
T 1wwl_A          170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG  212 (312)
T ss_dssp             CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC
T ss_pred             ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc
Confidence            3455555555554432211  22222  445555555555443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.46  E-value=0.00016  Score=53.96  Aligned_cols=86  Identities=17%  Similarity=0.093  Sum_probs=59.7

Q ss_pred             CCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcC-----CccceEeeccCccccccc-ccc
Q 038559           14 LLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGAL-----PSLKYLQLHKCLKLRMLL-EDL   87 (137)
Q Consensus        14 ~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~m-----p~L~~L~i~~c~~l~~lp-~gl   87 (137)
                      .+++|++|+|.++.-...++...+ .+.+++|+.|++.+..+... ....+.+     ++|+.|.+.++. +..+| ..+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~-~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~  169 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLL-EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQV  169 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSS-SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTC
T ss_pred             CcCCccEEEccCCcccchhHHHHH-HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHh
Confidence            689999999986542223321111 25789999999998654432 1111233     899999998875 55555 688


Q ss_pred             cCCCCCCEEEEcCCC
Q 038559           88 QFVATLKQLQILPLL  102 (137)
Q Consensus        88 ~~l~sL~~L~i~~~~  102 (137)
                      .++++|++|+++++.
T Consensus       170 ~~l~~L~~L~Ls~N~  184 (312)
T 1wwl_A          170 RVFPALSTLDLSDNP  184 (312)
T ss_dssp             CCCSSCCEEECCSCT
T ss_pred             ccCCCCCEEECCCCC
Confidence            899999999999886

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.43  E-value=7e-06  Score=57.48  Aligned_cols=37  Identities=19%  Similarity=0.144  Sum_probs=24.3

Q ss_pred             cCCccceEeeccCcccccccc--cccCCCCCCEEEEcCCC
Q 038559           65 ALPSLKYLQLHKCLKLRMLLE--DLQFVATLKQLQILPLL  102 (137)
Q Consensus        65 ~mp~L~~L~i~~c~~l~~lp~--gl~~l~sL~~L~i~~~~  102 (137)
                      .+++|+.|.+.++. +..+|.  .+..+++|++|++.+++
T Consensus       113 ~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          113 KLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             cCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence            45666666665543 444443  56778888888888875

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.42  E-value=0.00057  Score=53.88  Aligned_cols=13  Identities=23%  Similarity=0.064  Sum_probs=6.7

Q ss_pred             ccCCCccceeeec
Q 038559           12 IQLLPNLKTLTLW   24 (137)
Q Consensus        12 L~~Lp~L~~L~L~   24 (137)
                      ++.+++|++|.+.
T Consensus        81 ~~~l~~L~~L~Ls   93 (457)
T 3bz5_A           81 LSQNTNLTYLACD   93 (457)
T ss_dssp             CTTCTTCSEEECC
T ss_pred             cccCCCCCEEECc
Confidence            4455555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.38  E-value=3.7e-05  Score=53.87  Aligned_cols=80  Identities=15%  Similarity=-0.051  Sum_probs=53.6

Q ss_pred             CCCCCCccccccCCCccceeeecccccceeccceecCcc--CcccccEEEeccccc-cc-eeeecCCcCCccceEeeccC
Q 038559            2 SHLSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVG--GFHKLEILIIAFHVL-EE-WTEIEEGALPSLKYLQLHKC   77 (137)
Q Consensus         2 s~l~~~~l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~--~f~~Lk~L~l~~~~~-~~-~~~~~~g~mp~L~~L~i~~c   77 (137)
                      +.+..+.+..|..+++|++|.|.+|..+..-+-..+...  ..++|+.|++.+|.. .. .+ .....+|+|+.|.+.+|
T Consensus        71 ~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~~L~~L~L~~c  149 (176)
T 3e4g_A           71 SCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDL  149 (176)
T ss_dssp             CCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCTTCCEEEEESC
T ss_pred             CCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCCCCCEEECCCC
Confidence            457777888899999999999998864432100011111  235899999998642 21 11 11246999999999999


Q ss_pred             ccccc
Q 038559           78 LKLRM   82 (137)
Q Consensus        78 ~~l~~   82 (137)
                      ++++.
T Consensus       150 ~~Itd  154 (176)
T 3e4g_A          150 PGVKE  154 (176)
T ss_dssp             TTCCC
T ss_pred             CCCCc
Confidence            97754

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.34  E-value=0.00036  Score=57.43  Aligned_cols=57  Identities=16%  Similarity=0.090  Sum_probs=43.6

Q ss_pred             CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559           41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      .+++|+.|++.++.+..   +.. .+++|+.|.+.+| ++..+|..+.++++|+.|++++++
T Consensus       239 ~l~~L~~L~Ls~N~L~~---lp~-~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          239 LPSELKELMVSGNRLTS---LPM-LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             CCTTCCEEECCSSCCSC---CCC-CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred             CCCcCcEEECCCCCCCc---CCc-ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence            45677777777654432   122 6788999999877 577899999999999999999887

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.30  E-value=5.6e-06  Score=57.96  Aligned_cols=84  Identities=18%  Similarity=0.239  Sum_probs=59.9

Q ss_pred             cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCC
Q 038559           11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFV   90 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l   90 (137)
                      .++.+++|++|.|.++. +..++    ....+++|+.|++.++.+... ....+.+|+|+.|.+.++ ++..+| ++..+
T Consensus        43 ~~~~l~~L~~L~ls~n~-l~~l~----~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l  114 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNN-IEKIS----SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYN-QIASLS-GIEKL  114 (198)
T ss_dssp             HHHHTTTCSEEECSEEE-ESCCC----CHHHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEE-ECCCHH-HHHHH
T ss_pred             HHhcCCCCCEEECCCCC-Ccccc----ccccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCC-cCCcCC-ccccC
Confidence            57788999999997543 34342    234688999999988654422 111245789999999877 466777 57788


Q ss_pred             CCCCEEEEcCCC
Q 038559           91 ATLKQLQILPLL  102 (137)
Q Consensus        91 ~sL~~L~i~~~~  102 (137)
                      ++|+.|++.++.
T Consensus       115 ~~L~~L~l~~N~  126 (198)
T 1ds9_A          115 VNLRVLYMSNNK  126 (198)
T ss_dssp             HHSSEEEESEEE
T ss_pred             CCCCEEECCCCc
Confidence            899999998764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.28  E-value=0.00035  Score=51.93  Aligned_cols=62  Identities=19%  Similarity=0.104  Sum_probs=30.0

Q ss_pred             CcccccEEEeccccccceeeecCCcCCccceEeeccCcccc--cccc--cccCCCCCCEEEEcCCC
Q 038559           41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLR--MLLE--DLQFVATLKQLQILPLL  102 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~--~lp~--gl~~l~sL~~L~i~~~~  102 (137)
                      .+++|++|.+.++.+.......-+.+++|+.|.+.++.-..  .++.  .+.++++|++|.+++|.
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~  208 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG  208 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC
Confidence            35566666666543322111112356666666666554221  1222  22456666666666554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.27  E-value=0.00078  Score=54.74  Aligned_cols=78  Identities=17%  Similarity=0.106  Sum_probs=56.7

Q ss_pred             ccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEE
Q 038559           17 NLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQL   96 (137)
Q Consensus        17 ~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L   96 (137)
                      .|+.|.|.++. +..++    ..+.+++|+.|++.+..+.. +....+.|++|+.|.+.++ .+..+| ++.++++|+.|
T Consensus       442 ~L~~L~Ls~n~-l~~lp----~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L  513 (567)
T 1dce_A          442 DVRVLHLAHKD-LTVLC----HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQEL  513 (567)
T ss_dssp             TCSEEECTTSC-CSSCC----CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEE
T ss_pred             CceEEEecCCC-CCCCc----CccccccCcEeecCcccccc-cchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEE
Confidence            46677776442 44442    24478899999999865542 2334478999999999876 477788 78999999999


Q ss_pred             EEcCCC
Q 038559           97 QILPLL  102 (137)
Q Consensus        97 ~i~~~~  102 (137)
                      .++++.
T Consensus       514 ~Ls~N~  519 (567)
T 1dce_A          514 LLCNNR  519 (567)
T ss_dssp             ECCSSC
T ss_pred             ECCCCC
Confidence            998864

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=97.19  E-value=9.2e-05  Score=56.61  Aligned_cols=37  Identities=16%  Similarity=-0.045  Sum_probs=19.2

Q ss_pred             CCccceEeeccCcccc----cccccc-cCCCCCCEEEEcCCC
Q 038559           66 LPSLKYLQLHKCLKLR----MLLEDL-QFVATLKQLQILPLL  102 (137)
Q Consensus        66 mp~L~~L~i~~c~~l~----~lp~gl-~~l~sL~~L~i~~~~  102 (137)
                      +++|+.|.+.+|.--.    .+|..+ .++++|+.|.+++++
T Consensus       273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            5566666665553211    255544 345666666665543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.13  E-value=0.0008  Score=45.90  Aligned_cols=67  Identities=19%  Similarity=0.076  Sum_probs=45.9

Q ss_pred             ccccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccC
Q 038559            8 SALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKC   77 (137)
Q Consensus         8 ~l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c   77 (137)
                      +-..++.|++|++|+|.+.. +..++.+.+  ..+++|+.|++.+..+.......-+.+++|+.|.+.+-
T Consensus        46 ~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           46 EPGVFDRLTQLTRLDLDNNQ-LTVLPAGVF--DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             CTTTTTTCTTCSEEECCSSC-CCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ChhhhcCcccCCEEECCCCC-cCccChhhc--cCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCC
Confidence            33457899999999998553 555532222  47899999999986554322111357899999999753

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.12  E-value=0.0015  Score=51.45  Aligned_cols=55  Identities=20%  Similarity=0.191  Sum_probs=24.7

Q ss_pred             CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEcCC
Q 038559           41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPL  101 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~  101 (137)
                      .+++|++|++.+..+...   . ..+++|+.|.+.++ ++..+| ++.++++|++|++.++
T Consensus       151 ~l~~L~~L~l~~N~l~~l---p-~~~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          151 NSSFLKIIDVDNNSLKKL---P-DLPPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNN  205 (454)
T ss_dssp             TCTTCCEEECCSSCCSCC---C-CCCTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCCcCccc---C-CCcccccEEECcCC-cCCcCc-cccCCCCCCEEECCCC
Confidence            445555555554332211   0 12345555555444 234444 3455555555555444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.08  E-value=0.0019  Score=44.27  Aligned_cols=62  Identities=16%  Similarity=0.078  Sum_probs=47.3

Q ss_pred             cCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccccc-ccCCCCCCEEEEcCCC
Q 038559           40 GGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLED-LQFVATLKQLQILPLL  102 (137)
Q Consensus        40 ~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~g-l~~l~sL~~L~i~~~~  102 (137)
                      +-+++|+.|++.+..+.......-+.+++|+.|.+.+. ++..+|.+ +.++++|+.|+++++.
T Consensus        30 ~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           30 GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc
Confidence            34589999999986554332222367999999999876 68888876 4789999999998864

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.86  E-value=0.00015  Score=57.95  Aligned_cols=61  Identities=11%  Similarity=0.140  Sum_probs=33.4

Q ss_pred             cccccEEEeccccccce-eeecCCcCCccceEeeccCcc-cccccccccCCCCCCEEEEcCCC
Q 038559           42 FHKLEILIIAFHVLEEW-TEIEEGALPSLKYLQLHKCLK-LRMLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        42 f~~Lk~L~l~~~~~~~~-~~~~~g~mp~L~~L~i~~c~~-l~~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      +++|+.|.+.++..... +......+++|+.|.+.+|+- ...++..+.++++|++|++++|.
T Consensus       462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence            55566666655432210 000113467777777777761 12344445567777777777775

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.78  E-value=0.00017  Score=57.72  Aligned_cols=38  Identities=24%  Similarity=0.071  Sum_probs=21.8

Q ss_pred             cCCccceEeeccCcc----cccccccccCCCCCCEEEEcCCC
Q 038559           65 ALPSLKYLQLHKCLK----LRMLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        65 ~mp~L~~L~i~~c~~----l~~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      .+|+|+.|.+.+|.-    ...++.-..++++|++|.+++|.
T Consensus       154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA  195 (594)
T ss_dssp             HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred             hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence            466677777666651    11122223356678888887774

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=96.77  E-value=0.00031  Score=53.61  Aligned_cols=62  Identities=18%  Similarity=0.205  Sum_probs=30.8

Q ss_pred             CcccccEEEecccccc----ceeeecCCcCCccceEeeccCccc----cccccccc--CCCCCCEEEEcCCC
Q 038559           41 GFHKLEILIIAFHVLE----EWTEIEEGALPSLKYLQLHKCLKL----RMLLEDLQ--FVATLKQLQILPLL  102 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~----~~~~~~~g~mp~L~~L~i~~c~~l----~~lp~gl~--~l~sL~~L~i~~~~  102 (137)
                      .+++|+.|++.++.+.    ..+......+|+|+.|.+.+|.--    ..+|..+.  ++++|++|.+++|.
T Consensus       214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~  285 (386)
T 2ca6_A          214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE  285 (386)
T ss_dssp             GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence            4566666666654331    111111234666666666665421    12344442  26666667666654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.74  E-value=0.00018  Score=57.45  Aligned_cols=87  Identities=16%  Similarity=0.096  Sum_probs=37.6

Q ss_pred             CCCccceeeecccccceeccceecCccCcccccEEEeccccccc----eeeecCCcCCccceEeeccCc-cc--cccccc
Q 038559           14 LLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEE----WTEIEEGALPSLKYLQLHKCL-KL--RMLLED   86 (137)
Q Consensus        14 ~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~----~~~~~~g~mp~L~~L~i~~c~-~l--~~lp~g   86 (137)
                      .+|+|++|.|.+|.......- ..-...+++|++|++.++....    ++..-...+++|+.|.+..|. .+  ..++.-
T Consensus       128 ~~~~L~~L~L~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l  206 (594)
T 2p1m_B          128 SFKNFKVLVLSSCEGFSTDGL-AAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL  206 (594)
T ss_dssp             HCTTCCEEEEESCEEEEHHHH-HHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHH
T ss_pred             hCCCCcEEeCCCcCCCCHHHH-HHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHH
Confidence            466777777765532221000 0001246667777766543111    110011245566666665553 11  112111


Q ss_pred             ccCCCCCCEEEEcCC
Q 038559           87 LQFVATLKQLQILPL  101 (137)
Q Consensus        87 l~~l~sL~~L~i~~~  101 (137)
                      +.++++|++|.+.+|
T Consensus       207 ~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          207 VTRCPNLKSLKLNRA  221 (594)
T ss_dssp             HHHCTTCCEEECCTT
T ss_pred             HHhCCCCcEEecCCC
Confidence            223455555555555

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=96.69  E-value=0.002  Score=50.73  Aligned_cols=57  Identities=28%  Similarity=0.260  Sum_probs=25.2

Q ss_pred             cccccEEEeccccccceeeecCCcCCccceEeeccCcccc--cccccccCC-------------CCCCEEEEcCCC
Q 038559           42 FHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLR--MLLEDLQFV-------------ATLKQLQILPLL  102 (137)
Q Consensus        42 f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~--~lp~gl~~l-------------~sL~~L~i~~~~  102 (137)
                      +++|+.|++.++.+..   +.. .+++|+.|.+.++.-..  .+|.++.++             ++|+.|++++++
T Consensus       336 ~~~L~~L~L~~N~l~~---lp~-~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~  407 (454)
T 1jl5_A          336 PPRLERLIASFNHLAE---VPE-LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP  407 (454)
T ss_dssp             CTTCCEEECCSSCCSC---CCC-CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred             CCcCCEEECCCCcccc---ccc-hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence            4666666666643332   112 46777777776654222  456666655             667777776654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=96.39  E-value=0.0086  Score=49.23  Aligned_cols=13  Identities=38%  Similarity=0.439  Sum_probs=7.1

Q ss_pred             CCCccceeeeccc
Q 038559           14 LLPNLKTLTLWLA   26 (137)
Q Consensus        14 ~Lp~L~~L~L~~~   26 (137)
                      .+++|++|+|+++
T Consensus        79 ~l~~L~~L~Ls~N   91 (622)
T 3g06_A           79 LPPELRTLEVSGN   91 (622)
T ss_dssp             CCTTCCEEEECSC
T ss_pred             cCCCCCEEEcCCC
Confidence            3456666666543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=96.27  E-value=0.006  Score=49.71  Aligned_cols=55  Identities=11%  Similarity=0.115  Sum_probs=36.0

Q ss_pred             ccccEEEeccccccceeeecCCcCCcc-------ceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559           43 HKLEILIIAFHVLEEWTEIEEGALPSL-------KYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        43 ~~Lk~L~l~~~~~~~~~~~~~g~mp~L-------~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      ++|+.|++.++.+.....    -.++|       +.|.+.++ .+..+|.++.++++|+.|++++++
T Consensus       180 ~~L~~L~Ls~N~L~~lp~----~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          180 ESLEALDVSTNLLESLPA----VPVRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             TTCCEEECCSSCCSSCCC----CC--------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSS
T ss_pred             CCCCEEECcCCCCCchhh----HHHhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCc
Confidence            566666666644332211    11155       88888765 477889888889999999999886

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=96.06  E-value=0.018  Score=46.94  Aligned_cols=11  Identities=18%  Similarity=0.289  Sum_probs=5.4

Q ss_pred             CCCCEEEEcCC
Q 038559           91 ATLKQLQILPL  101 (137)
Q Consensus        91 ~sL~~L~i~~~  101 (137)
                      ++|+.|+++++
T Consensus       180 ~~L~~L~Ls~N  190 (571)
T 3cvr_A          180 ESLEALDVSTN  190 (571)
T ss_dssp             TTCCEEECCSS
T ss_pred             CCCCEEECcCC
Confidence            45555555443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=95.90  E-value=0.00084  Score=52.02  Aligned_cols=90  Identities=18%  Similarity=0.152  Sum_probs=46.6

Q ss_pred             ccCCCccceeeecccccceeccceec--CccCcccccEEEeccccccce-eeecCCcCC----ccceEeeccCccc----
Q 038559           12 IQLLPNLKTLTLWLASKAKQLEKEFC--SVGGFHKLEILIIAFHVLEEW-TEIEEGALP----SLKYLQLHKCLKL----   80 (137)
Q Consensus        12 L~~Lp~L~~L~L~~~~~~~~l~~~~~--~~~~f~~Lk~L~l~~~~~~~~-~~~~~g~mp----~L~~L~i~~c~~l----   80 (137)
                      +..+|+|++|+|.++. +.......+  ....+++|++|++.+..+... +..-..+++    +|+.|.+.+|.--    
T Consensus        24 ~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~  102 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC  102 (461)
T ss_dssp             HHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred             HhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence            5677788888887553 211000000  012457777777776432210 000001233    5777777766421    


Q ss_pred             ccccccccCCCCCCEEEEcCCC
Q 038559           81 RMLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        81 ~~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      ..+|..+.++++|++|+++++.
T Consensus       103 ~~l~~~l~~~~~L~~L~Ls~n~  124 (461)
T 1z7x_W          103 GVLSSTLRTLPTLQELHLSDNL  124 (461)
T ss_dssp             HHHHHHTTSCTTCCEEECCSSB
T ss_pred             HHHHHHHccCCceeEEECCCCc
Confidence            2456666667777777776665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=95.82  E-value=0.0048  Score=49.20  Aligned_cols=13  Identities=8%  Similarity=0.013  Sum_probs=6.9

Q ss_pred             CcccccEEEeccc
Q 038559           41 GFHKLEILIIAFH   53 (137)
Q Consensus        41 ~f~~Lk~L~l~~~   53 (137)
                      .+++|++|++.++
T Consensus       291 ~~~~L~~L~Ls~~  303 (592)
T 3ogk_B          291 FAAQIRKLDLLYA  303 (592)
T ss_dssp             GGGGCCEEEETTC
T ss_pred             hcCCCcEEecCCC
Confidence            3455555555543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=95.75  E-value=0.012  Score=45.28  Aligned_cols=14  Identities=29%  Similarity=0.152  Sum_probs=8.5

Q ss_pred             CCCCCCEEEEcCCC
Q 038559           89 FVATLKQLQILPLL  102 (137)
Q Consensus        89 ~l~sL~~L~i~~~~  102 (137)
                      .+++|+.|.+.+|.
T Consensus       250 ~~p~Lr~L~L~~~~  263 (362)
T 2ra8_A          250 RFPNLKWLGIVDAE  263 (362)
T ss_dssp             TCTTCCEEEEESCT
T ss_pred             CCCCcCEEeCCCCC
Confidence            35666666666654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=95.61  E-value=0.02  Score=42.78  Aligned_cols=62  Identities=23%  Similarity=0.251  Sum_probs=46.2

Q ss_pred             cCcccccEEEecc-ccccceeeecCCcCCccceEeeccCcccccccc-cccCCCCCCEEEEcCCC
Q 038559           40 GGFHKLEILIIAF-HVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DLQFVATLKQLQILPLL  102 (137)
Q Consensus        40 ~~f~~Lk~L~l~~-~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl~~l~sL~~L~i~~~~  102 (137)
                      ..+++|+.|+|.+ ..+.....-.-+.|++|+.|.+.+. ++..+|. .+.++++|+.|+++++.
T Consensus        28 ~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCc
Confidence            3567899999986 4444322122467999999999876 5777765 56899999999998765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=95.43  E-value=0.0024  Score=48.35  Aligned_cols=17  Identities=18%  Similarity=0.147  Sum_probs=9.8

Q ss_pred             ccccCCC-ccceeeeccc
Q 038559           10 LVIQLLP-NLKTLTLWLA   26 (137)
Q Consensus        10 ~~L~~Lp-~L~~L~L~~~   26 (137)
                      ..+..+| +|++|.|.++
T Consensus        44 ~~l~~~~~~L~~L~Ls~N   61 (362)
T 3goz_A           44 QAFANTPASVTSLNLSGN   61 (362)
T ss_dssp             HHHHTCCTTCCEEECCSS
T ss_pred             HHHHhCCCceeEEECcCC
Confidence            3455566 6666666543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=95.40  E-value=0.0029  Score=47.93  Aligned_cols=42  Identities=10%  Similarity=0.025  Sum_probs=22.9

Q ss_pred             ccCCCccceeeecccccceecccee--cCccCcc-cccEEEecccc
Q 038559           12 IQLLPNLKTLTLWLASKAKQLEKEF--CSVGGFH-KLEILIIAFHV   54 (137)
Q Consensus        12 L~~Lp~L~~L~L~~~~~~~~l~~~~--~~~~~f~-~Lk~L~l~~~~   54 (137)
                      ++..++|++|+|+++. +...+...  -....++ +|++|++.++.
T Consensus        18 ~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~   62 (362)
T 3goz_A           18 TSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNS   62 (362)
T ss_dssp             HTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSC
T ss_pred             HhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCC
Confidence            3444559999998654 32221100  0012455 78888887753

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=95.39  E-value=0.00061  Score=52.80  Aligned_cols=36  Identities=22%  Similarity=0.217  Sum_probs=27.6

Q ss_pred             CCccceEeeccCcccc-----cccccccCCCCCCEEEEcCCC
Q 038559           66 LPSLKYLQLHKCLKLR-----MLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        66 mp~L~~L~i~~c~~l~-----~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      .++|+.|.+.+|. +.     .+|..+.++++|++|++++++
T Consensus       369 ~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          369 GSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             TCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             CCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            5688888888774 33     577777778888888888876

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=94.58  E-value=0.085  Score=39.17  Aligned_cols=78  Identities=14%  Similarity=0.078  Sum_probs=48.8

Q ss_pred             CCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCc---CCccc-eEeeccCcccccccc-cccC
Q 038559           15 LPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGA---LPSLK-YLQLHKCLKLRMLLE-DLQF   89 (137)
Q Consensus        15 Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~---mp~L~-~L~i~~c~~l~~lp~-gl~~   89 (137)
                      +++|+.|+|.+.. +..++...|.  ++++|+.+.+.+.  ..  .+..++   +++|+ .+.+..  +++.++. .+.+
T Consensus       225 ~~~L~~l~L~~n~-i~~I~~~aF~--~~~~L~~l~l~~n--i~--~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~  295 (329)
T 3sb4_A          225 MPNLVSLDISKTN-ATTIPDFTFA--QKKYLLKIKLPHN--LK--TIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMG  295 (329)
T ss_dssp             CTTCCEEECTTBC-CCEECTTTTT--TCTTCCEEECCTT--CC--EECTTTTTTCTTCCEEEEECT--TCCEECTTTTTT
T ss_pred             cCCCeEEECCCCC-cceecHhhhh--CCCCCCEEECCcc--cc--eehHHHhhCChhccEEEEEcc--cceEEchhhhhC
Confidence            6788888887432 5555322332  5677888888762  21  344444   45566 666654  5666654 6778


Q ss_pred             CCCCCEEEEcCC
Q 038559           90 VATLKQLQILPL  101 (137)
Q Consensus        90 l~sL~~L~i~~~  101 (137)
                      +++|++|.+.+.
T Consensus       296 c~~L~~l~l~~n  307 (329)
T 3sb4_A          296 CDNLRYVLATGD  307 (329)
T ss_dssp             CTTEEEEEECSS
T ss_pred             CccCCEEEeCCC
Confidence            888888887553

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=94.53  E-value=0.11  Score=38.58  Aligned_cols=80  Identities=19%  Similarity=0.125  Sum_probs=52.9

Q ss_pred             ccccCCCccceeeecccccceeccceecCccCccccc-EEEeccccccceeeecCCc---CCccceEeeccCcccccccc
Q 038559           10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLE-ILIIAFHVLEEWTEIEEGA---LPSLKYLQLHKCLKLRMLLE   85 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk-~L~l~~~~~~~~~~~~~g~---mp~L~~L~i~~c~~l~~lp~   85 (137)
                      ..+..+++|+.|.|.+.  +..++...|.  ++++|+ .+.+.+ ...   .++.++   +++|+.+.+.. .+++.++.
T Consensus       244 ~aF~~~~~L~~l~l~~n--i~~I~~~aF~--~~~~L~~~l~l~~-~l~---~I~~~aF~~c~~L~~l~l~~-n~i~~I~~  314 (329)
T 3sb4_A          244 FTFAQKKYLLKIKLPHN--LKTIGQRVFS--NCGRLAGTLELPA-SVT---AIEFGAFMGCDNLRYVLATG-DKITTLGD  314 (329)
T ss_dssp             TTTTTCTTCCEEECCTT--CCEECTTTTT--TCTTCCEEEEECT-TCC---EECTTTTTTCTTEEEEEECS-SCCCEECT
T ss_pred             hhhhCCCCCCEEECCcc--cceehHHHhh--CChhccEEEEEcc-cce---EEchhhhhCCccCCEEEeCC-CccCccch
Confidence            35678899999999753  5555322332  567788 888876 222   345554   56777777633 35777776


Q ss_pred             -cccCCCCCCEEEE
Q 038559           86 -DLQFVATLKQLQI   98 (137)
Q Consensus        86 -gl~~l~sL~~L~i   98 (137)
                       .+.++++|+.|+.
T Consensus       315 ~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          315 ELFGNGVPSKLIYK  328 (329)
T ss_dssp             TTTCTTCCCCEEEC
T ss_pred             hhhcCCcchhhhcc
Confidence             6788999998873

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=94.20  E-value=0.021  Score=42.21  Aligned_cols=61  Identities=20%  Similarity=0.181  Sum_probs=40.0

Q ss_pred             cCcccccEEEeccccccceeeec--CCcCCccceEeeccCcccccccccccCCC--CCCEEEEcCCC
Q 038559           40 GGFHKLEILIIAFHVLEEWTEIE--EGALPSLKYLQLHKCLKLRMLLEDLQFVA--TLKQLQILPLL  102 (137)
Q Consensus        40 ~~f~~Lk~L~l~~~~~~~~~~~~--~g~mp~L~~L~i~~c~~l~~lp~gl~~l~--sL~~L~i~~~~  102 (137)
                      ..||+|++|++++..+.....+.  .+.+|+|+.|.+.+- ++..+. .+..+.  +|++|.+.++|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Np  231 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNS  231 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTST
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCc
Confidence            36899999999986544321111  136899999999653 344442 233333  89999999887

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=92.74  E-value=0.0066  Score=46.67  Aligned_cols=37  Identities=22%  Similarity=0.110  Sum_probs=18.9

Q ss_pred             CCccceEeeccCcc----cccccccccCCCCCCEEEEcCCC
Q 038559           66 LPSLKYLQLHKCLK----LRMLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        66 mp~L~~L~i~~c~~----l~~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      +++|+.|.+.+|.-    ...++.++.+.++|++|++++|.
T Consensus       182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~  222 (372)
T 3un9_A          182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG  222 (372)
T ss_dssp             CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred             CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence            45556665555431    11233445555566666666554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=92.02  E-value=0.067  Score=39.48  Aligned_cols=82  Identities=20%  Similarity=0.113  Sum_probs=46.2

Q ss_pred             cCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCC--ccceEeeccCcccccccc-----
Q 038559           13 QLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALP--SLKYLQLHKCLKLRMLLE-----   85 (137)
Q Consensus        13 ~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp--~L~~L~i~~c~~l~~lp~-----   85 (137)
                      .++|+|+.|.|++.. +..+..-......||+|+.|++.+..+..+-  +.+.+.  +|+.|.+.+.+--..+|.     
T Consensus       167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~--~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSER--ELDKIKGLKLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSGG--GGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred             hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCch--hhhhcccCCcceEEccCCcCccccCcchhHH
Confidence            357888888887432 3332100001136889999999875444321  112333  888888877663333431     


Q ss_pred             --cccCCCCCCEEE
Q 038559           86 --DLQFVATLKQLQ   97 (137)
Q Consensus        86 --gl~~l~sL~~L~   97 (137)
                        -+..+++|+.|+
T Consensus       244 ~~il~~~P~L~~LD  257 (267)
T 3rw6_A          244 SAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHCTTCCEES
T ss_pred             HHHHHHCcccCeEC
Confidence              245567777665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=91.55  E-value=0.017  Score=44.33  Aligned_cols=88  Identities=13%  Similarity=-0.057  Sum_probs=50.5

Q ss_pred             CCCccceeeecccccceeccceecC--ccCcccccEEEeccccccce----eeecCCcCCccceEeeccCccc----ccc
Q 038559           14 LLPNLKTLTLWLASKAKQLEKEFCS--VGGFHKLEILIIAFHVLEEW----TEIEEGALPSLKYLQLHKCLKL----RML   83 (137)
Q Consensus        14 ~Lp~L~~L~L~~~~~~~~l~~~~~~--~~~f~~Lk~L~l~~~~~~~~----~~~~~g~mp~L~~L~i~~c~~l----~~l   83 (137)
                      ..++|++|+|.++. +...+...+.  -...++|++|++.++.+...    +.......++|+.|.+.+|.--    ..+
T Consensus       153 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          153 DQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             TTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             cCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            35677777776543 2111000010  02467788888887543211    0001134678999999887521    235


Q ss_pred             cccccCCCCCCEEEEcCCC
Q 038559           84 LEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        84 p~gl~~l~sL~~L~i~~~~  102 (137)
                      ...+...++|++|++++++
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSS
T ss_pred             HHHHHhCCCCCEEeccCCC
Confidence            5566677889999998886

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=88.85  E-value=0.063  Score=36.88  Aligned_cols=92  Identities=16%  Similarity=0.097  Sum_probs=51.2

Q ss_pred             cccCCCccceeeecccccceeccceec--CccCcccccEEEeccccccce--eeec--CCcCCccceEeeccCcc----c
Q 038559           11 VIQLLPNLKTLTLWLASKAKQLEKEFC--SVGGFHKLEILIIAFHVLEEW--TEIE--EGALPSLKYLQLHKCLK----L   80 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~--~~~~f~~Lk~L~l~~~~~~~~--~~~~--~g~mp~L~~L~i~~c~~----l   80 (137)
                      .+...++|++|.|.++..+..-+...+  .-...++|++|++.++.+...  ..+.  ....++|+.|.+.+|.-    .
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            466788999999986511211000000  012357788888887543210  0000  02346788888877641    1


Q ss_pred             ccccccccCCCCCCEEEE--cCCC
Q 038559           81 RMLLEDLQFVATLKQLQI--LPLL  102 (137)
Q Consensus        81 ~~lp~gl~~l~sL~~L~i--~~~~  102 (137)
                      ..+...+.+.++|++|++  .++.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~  134 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQP  134 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSC
T ss_pred             HHHHHHHHhCCCceEEEecCCCCC
Confidence            234556777778888888  5554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=84.22  E-value=0.14  Score=35.07  Aligned_cols=91  Identities=10%  Similarity=-0.058  Sum_probs=54.4

Q ss_pred             cccCCCccceeeecccccceeccceecC--ccCcccccEEEeccccccce----eeecCCcCCccceEee--ccCcc---
Q 038559           11 VIQLLPNLKTLTLWLASKAKQLEKEFCS--VGGFHKLEILIIAFHVLEEW----TEIEEGALPSLKYLQL--HKCLK---   79 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~--~~~f~~Lk~L~l~~~~~~~~----~~~~~g~mp~L~~L~i--~~c~~---   79 (137)
                      .|...++|++|+|.++.-...- ...+.  -...++|++|++.++.+...    +.......++|+.|.+  ..+.-   
T Consensus        60 ~L~~~~~L~~L~Ls~n~i~~~g-~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~  138 (185)
T 1io0_A           60 ALKTNTYVKKFSIVGTRSNDPV-AFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN  138 (185)
T ss_dssp             HHTTCCSCCEEECTTSCCCHHH-HHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred             HHHhCCCcCEEECcCCCCChHH-HHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence            4566799999999865411100 00010  01347899999998543211    0011134678999999  54431   


Q ss_pred             -cccccccccCCCCCCEEEEcCCC
Q 038559           80 -LRMLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        80 -l~~lp~gl~~l~sL~~L~i~~~~  102 (137)
                       ...+...+...++|++|++.++.
T Consensus       139 g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          139 VEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHHHhCCCcCEEeccCCC
Confidence             12244566677899999999886

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=80.07  E-value=5.1  Score=30.73  Aligned_cols=32  Identities=6%  Similarity=0.092  Sum_probs=16.7

Q ss_pred             CccceEeeccCcccccccc-cccCCCCCCEEEEcCC
Q 038559           67 PSLKYLQLHKCLKLRMLLE-DLQFVATLKQLQILPL  101 (137)
Q Consensus        67 p~L~~L~i~~c~~l~~lp~-gl~~l~sL~~L~i~~~  101 (137)
                      ++|+.+.+..  +++.++. .+.++ +|++|.+.+.
T Consensus       323 ~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          323 RKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             CSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS
T ss_pred             CCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC
Confidence            4555555521  2444433 34555 6777777554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	137
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.29
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.26
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.24
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.12
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.0
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.99
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.94
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.92
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.86
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.86
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.85
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.84
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.73
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.72
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.72
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.57
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.56
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.56
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.56
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.52
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.5
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.43
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.35
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.29
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.02
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.02
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.41
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.4
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.33
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	94.51
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	92.4
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	87.33
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	87.3
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	86.72
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	80.85
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	80.59

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=4.1e-07  Score=61.01  Aligned_cols=84  Identities=21%  Similarity=0.194  Sum_probs=54.7

Q ss_pred             cCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc--cccCC
Q 038559           13 QLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE--DLQFV   90 (137)
Q Consensus        13 ~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~--gl~~l   90 (137)
                      ..+++|++|+|++.. +..++    +...+++|++|.+.++.+..........+|+|+.|.+.++. +..++.  .+..+
T Consensus        38 ~~l~~L~~L~Ls~N~-i~~l~----~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~-i~~~~~l~~l~~l  111 (162)
T d1a9na_          38 ATLDQFDAIDFSDNE-IRKLD----GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASL  111 (162)
T ss_dssp             GGTTCCSEEECCSSC-CCEEC----CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGC
T ss_pred             cccccCCEEECCCCC-CCccC----CcccCcchhhhhcccccccCCCccccccccccccceecccc-ccccccccccccc
Confidence            457778888887543 44441    22367888888888765443211011358888888887764 544543  56778


Q ss_pred             CCCCEEEEcCCC
Q 038559           91 ATLKQLQILPLL  102 (137)
Q Consensus        91 ~sL~~L~i~~~~  102 (137)
                      ++|++|++.+++
T Consensus       112 ~~L~~L~l~~N~  123 (162)
T d1a9na_         112 KSLTYLCILRNP  123 (162)
T ss_dssp             TTCCEEECCSSG
T ss_pred             cccchhhcCCCc
Confidence            889999998887

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.6e-06  Score=57.68  Aligned_cols=91  Identities=20%  Similarity=0.012  Sum_probs=64.3

Q ss_pred             cccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccccccc
Q 038559            9 ALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQ   88 (137)
Q Consensus         9 l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~   88 (137)
                      ...+..+++|+.|.|.+...++.++.+.|  .++++|+.|++.+..+.......-..+++|+.|.+.+. +++.+|.++-
T Consensus        24 p~~l~~l~~l~~L~l~~n~~l~~i~~~~f--~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~  100 (156)
T d2ifga3          24 LHHLPGAENLTELYIENQQHLQHLELRDL--RGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTV  100 (156)
T ss_dssp             TTTSCSCSCCSEEECCSCSSCCEECGGGS--CSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTT
T ss_pred             cccccCccccCeeecCCCccccccCchhh--ccccccCcceeeccccCCcccccccccccccceeccCC-CCcccChhhh
Confidence            34567788999999975555776643333  36899999999986544221111245889999999764 5889998765


Q ss_pred             CCCCCCEEEEcCCC
Q 038559           89 FVATLKQLQILPLL  102 (137)
Q Consensus        89 ~l~sL~~L~i~~~~  102 (137)
                      ...+|++|++.+.|
T Consensus       101 ~~~~l~~L~L~~Np  114 (156)
T d2ifga3         101 QGLSLQELVLSGNP  114 (156)
T ss_dssp             CSCCCCEEECCSSC
T ss_pred             ccccccccccCCCc
Confidence            56689999998765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.24  E-value=1.3e-06  Score=55.95  Aligned_cols=88  Identities=20%  Similarity=0.135  Sum_probs=65.1

Q ss_pred             ccccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccc--c
Q 038559            8 SALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLL--E   85 (137)
Q Consensus         8 ~l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp--~   85 (137)
                      .++.+++|++|++|++++.. +..+++   ..+.+++|+.|.+.+......  ..-+.+|+|+.|.+.+.. +..+|  .
T Consensus        12 ~l~~l~~l~~L~~L~ls~N~-l~~lp~---~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~N~-i~~~~~~~   84 (124)
T d1dcea3          12 VLCHLEQLLLVTHLDLSHNR-LRALPP---ALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNR-LQQSAAIQ   84 (124)
T ss_dssp             SCCCGGGGTTCCEEECCSSC-CCCCCG---GGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCSSC-CCSSSTTG
T ss_pred             CCcccccCCCCCEEECCCCc-cCcchh---hhhhhhccccccccccccccc--CccccccccCeEECCCCc-cCCCCCch
Confidence            44568899999999998543 556632   234789999999998654432  234689999999998753 55555  3


Q ss_pred             cccCCCCCCEEEEcCCC
Q 038559           86 DLQFVATLKQLQILPLL  102 (137)
Q Consensus        86 gl~~l~sL~~L~i~~~~  102 (137)
                      .+..+++|+.|++.+.+
T Consensus        85 ~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          85 PLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             GGGGCTTCCEEECTTSG
T ss_pred             hhcCCCCCCEEECCCCc
Confidence            57789999999998876

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.12  E-value=2.1e-06  Score=62.21  Aligned_cols=90  Identities=12%  Similarity=0.025  Sum_probs=62.5

Q ss_pred             ccccCCCccceeeecccccce-eccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccccccc
Q 038559           10 LVIQLLPNLKTLTLWLASKAK-QLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQ   88 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~-~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~   88 (137)
                      +.+++|++|++|+|.++.... .+|.   ..+.+++|++|++.+..+..........+++|+.+.+..+.....+|..+.
T Consensus        70 ~~l~~L~~L~~L~Ls~~N~l~g~iP~---~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~  146 (313)
T d1ogqa_          70 SSLANLPYLNFLYIGGINNLVGPIPP---AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS  146 (313)
T ss_dssp             GGGGGCTTCSEEEEEEETTEESCCCG---GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             hHHhcCcccccccccccccccccccc---ccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhc
Confidence            468899999999997543333 3422   234689999999988654433222235677888888877666667777788


Q ss_pred             CCCCCCEEEEcCCC
Q 038559           89 FVATLKQLQILPLL  102 (137)
Q Consensus        89 ~l~sL~~L~i~~~~  102 (137)
                      ++++|+.+.+.++.
T Consensus       147 ~l~~L~~l~l~~n~  160 (313)
T d1ogqa_         147 SLPNLVGITFDGNR  160 (313)
T ss_dssp             GCTTCCEEECCSSC
T ss_pred             cCcccceeeccccc
Confidence            88888888877653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.00  E-value=1.4e-05  Score=54.18  Aligned_cols=89  Identities=18%  Similarity=0.198  Sum_probs=57.0

Q ss_pred             ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-ccc
Q 038559           10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DLQ   88 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl~   88 (137)
                      ..++.+++|+.|.|.+.. +..++.  .....+++|++|++.+..+.......-..+++|+.|.+.+. +++.+|. .+.
T Consensus        48 ~~f~~l~~L~~L~L~~N~-i~~~~~--~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N-~l~~i~~~~f~  123 (192)
T d1w8aa_          48 GLFGRLPHLVKLELKRNQ-LTGIEP--NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFE  123 (192)
T ss_dssp             CSGGGCTTCCEEECCSSC-CCCBCT--TTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSST
T ss_pred             cccCCCceEeeeeccccc-cccccc--cccccccccceeeeccccccccCHHHHhCCCcccccccCCc-cccccCHHHhc
Confidence            445677888888886443 333311  11235678888888875444321111246888999988765 4777766 467


Q ss_pred             CCCCCCEEEEcCCC
Q 038559           89 FVATLKQLQILPLL  102 (137)
Q Consensus        89 ~l~sL~~L~i~~~~  102 (137)
                      ++++|++|++.+.+
T Consensus       124 ~l~~L~~l~L~~N~  137 (192)
T d1w8aa_         124 HLNSLTSLNLASNP  137 (192)
T ss_dssp             TCTTCCEEECTTCC
T ss_pred             CCcccccccccccc
Confidence            88899999997755

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.99  E-value=1.2e-05  Score=55.60  Aligned_cols=58  Identities=17%  Similarity=0.198  Sum_probs=26.9

Q ss_pred             CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559           41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      ..++|+.|.+.++....+  ..-+.+++|+.|.+.++ +++.+|. +.++++|++|++++|.
T Consensus       149 ~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n-~l~~l~~-l~~l~~L~~L~Ls~N~  206 (227)
T d1h6ua2         149 GLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNNQ  206 (227)
T ss_dssp             GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTSC
T ss_pred             cccccccccccccccccc--hhhcccccceecccCCC-ccCCChh-hcCCCCCCEEECcCCc
Confidence            344555555554332211  11234555555555544 3444432 4455555555555543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.5e-05  Score=56.63  Aligned_cols=61  Identities=21%  Similarity=0.026  Sum_probs=45.1

Q ss_pred             CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559           41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      .+++|+.|.+.+..+.....-.-+.+++|+.|.+.+. +++.+|.++..+++|+.|.+.+.|
T Consensus       146 ~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ccccchhcccccccccccCccccccccccceeecccC-CCcccChhHCCCCCCCEEEecCCC
Confidence            4567777777775443221111256899999999876 488999999999999999998765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.92  E-value=2.2e-05  Score=53.92  Aligned_cols=19  Identities=26%  Similarity=0.219  Sum_probs=14.9

Q ss_pred             ccccccCCCccceeeeccc
Q 038559            8 SALVIQLLPNLKTLTLWLA   26 (137)
Q Consensus         8 ~l~~L~~Lp~L~~L~L~~~   26 (137)
                      .++.++.+++|+.|.+.++
T Consensus       104 ~l~~l~~l~~L~~L~l~~~  122 (210)
T d1h6ta2         104 DLSSLKDLKKLKSLSLEHN  122 (210)
T ss_dssp             CGGGGTTCTTCCEEECTTS
T ss_pred             ccccccccccccccccccc
Confidence            3567888999999998754

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.91  E-value=2.2e-05  Score=53.47  Aligned_cols=62  Identities=13%  Similarity=0.113  Sum_probs=30.5

Q ss_pred             cccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccC
Q 038559            9 ALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKC   77 (137)
Q Consensus         9 l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c   77 (137)
                      ++.++++++|++|.+.++. ...+    ...+.+++|+.|.+.+......  .....|++|+.|.+.++
T Consensus        77 ~~~l~~l~~L~~L~l~~n~-~~~~----~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n  138 (199)
T d2omxa2          77 ITPLKNLTKLVDILMNNNQ-IADI----TPLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSN  138 (199)
T ss_dssp             CGGGTTCTTCCEEECCSSC-CCCC----GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSS
T ss_pred             cccccCCcccccccccccc-cccc----cccccccccccccccccccccc--cccchhhhhHHhhhhhh
Confidence            3457788888888887443 2222    1122455566655554322211  11233455555555443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=5.8e-05  Score=53.40  Aligned_cols=80  Identities=20%  Similarity=0.114  Sum_probs=44.9

Q ss_pred             ccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEE
Q 038559           17 NLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQL   96 (137)
Q Consensus        17 ~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L   96 (137)
                      +|++|+|.+.. +..++...+  ..+++|++|++.+..+... . ..+.+++|+.|.+.++ ++...|..+.++++|+.|
T Consensus        32 ~l~~L~Ls~N~-i~~l~~~~f--~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L  105 (266)
T d1p9ag_          32 DTTILHLSENL-LYTFSLATL--MPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVL  105 (266)
T ss_dssp             TCCEEECTTSC-CSEEEGGGG--TTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEE
T ss_pred             CCCEEECcCCc-CCCcCHHHh--hcccccccccccccccccc-c-cccccccccccccccc-cccccccccccccccccc
Confidence            57777776432 444422122  2566777777776544322 1 2245777777777655 355555556666666666


Q ss_pred             EEcCCC
Q 038559           97 QILPLL  102 (137)
Q Consensus        97 ~i~~~~  102 (137)
                      +++++.
T Consensus       106 ~l~~~~  111 (266)
T d1p9ag_         106 DVSFNR  111 (266)
T ss_dssp             ECCSSC
T ss_pred             cccccc
Confidence            665543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.86  E-value=2.4e-05  Score=53.30  Aligned_cols=86  Identities=15%  Similarity=0.179  Sum_probs=54.9

Q ss_pred             ccccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccc
Q 038559            8 SALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDL   87 (137)
Q Consensus         8 ~l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl   87 (137)
                      +++.++.|++|++|+++++. +..+    .+.+.+++|+.|.+.+......  ...+.+++|+.|.+..|.... + .++
T Consensus        54 ~l~~l~~l~nL~~L~Ls~N~-l~~~----~~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~~~~~~-~-~~~  124 (199)
T d2omxa2          54 SIDGVEYLNNLTQINFSNNQ-LTDI----TPLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQITD-I-DPL  124 (199)
T ss_dssp             CCTTGGGCTTCCEEECCSSC-CCCC----GGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGG
T ss_pred             CccccccCCCcCcCcccccc-ccCc----ccccCCcccccccccccccccc--ccccccccccccccccccccc-c-ccc
Confidence            34556778888888887653 4443    1234778888888877443321  123578888888887665332 2 246


Q ss_pred             cCCCCCCEEEEcCCC
Q 038559           88 QFVATLKQLQILPLL  102 (137)
Q Consensus        88 ~~l~sL~~L~i~~~~  102 (137)
                      .++++|+.|+++++.
T Consensus       125 ~~l~~L~~L~l~~n~  139 (199)
T d2omxa2         125 KNLTNLNRLELSSNT  139 (199)
T ss_dssp             TTCTTCSEEECCSSC
T ss_pred             chhhhhHHhhhhhhh
Confidence            677888888887664

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.85  E-value=2.3e-05  Score=57.31  Aligned_cols=84  Identities=15%  Similarity=0.158  Sum_probs=46.4

Q ss_pred             ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccC
Q 038559           10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQF   89 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~   89 (137)
                      +.+..++.++.+.+..+. +..+    .....+++++.|++.+..+...  .....+|+|+.|.+.+| +++.+| ++.+
T Consensus       279 ~~~~~~~~l~~l~~~~n~-l~~~----~~~~~~~~l~~L~ls~n~l~~l--~~l~~l~~L~~L~L~~n-~l~~l~-~l~~  349 (384)
T d2omza2         279 SPLAGLTALTNLELNENQ-LEDI----SPISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFANN-KVSDVS-SLAN  349 (384)
T ss_dssp             GGGTTCTTCSEEECCSSC-CSCC----GGGGGCTTCSEEECCSSCCSCC--GGGGGCTTCCEEECCSS-CCCCCG-GGGG
T ss_pred             Cccccccccccccccccc-cccc----cccchhcccCeEECCCCCCCCC--cccccCCCCCEEECCCC-CCCCCh-hHcC
Confidence            345566666666665332 2222    1123556677777766443322  12245777777777666 455555 4666


Q ss_pred             CCCCCEEEEcCCC
Q 038559           90 VATLKQLQILPLL  102 (137)
Q Consensus        90 l~sL~~L~i~~~~  102 (137)
                      +++|++|+++++.
T Consensus       350 l~~L~~L~l~~N~  362 (384)
T d2omza2         350 LTNINWLSAGHNQ  362 (384)
T ss_dssp             CTTCCEEECCSSC
T ss_pred             CCCCCEEECCCCc
Confidence            7777777776654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.84  E-value=1.7e-05  Score=56.93  Aligned_cols=37  Identities=19%  Similarity=0.125  Sum_probs=30.4

Q ss_pred             cCCccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559           65 ALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        65 ~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      .+++|+.|.+.++ +++.+|.++.++++|+.|+++++.
T Consensus       217 ~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N~  253 (305)
T d1xkua_         217 NTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN  253 (305)
T ss_dssp             GSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC
T ss_pred             ccccceeeecccc-cccccccccccccCCCEEECCCCc
Confidence            4688888888887 578888888888899999888765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=3.8e-05  Score=54.73  Aligned_cols=88  Identities=22%  Similarity=0.146  Sum_probs=50.5

Q ss_pred             ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccc-cccc
Q 038559           10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLL-EDLQ   88 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp-~gl~   88 (137)
                      ..+..+++|++|.|.+.. +..++.+.+  .+.++|+.+.+.+..........-+.+++|+.|.+.++. +..+| ..+.
T Consensus       147 ~~f~~~~~L~~L~l~~N~-l~~l~~~~f--~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~-i~~~~~~~~~  222 (284)
T d1ozna_         147 DTFRDLGNLTHLFLHGNR-ISSVPERAF--RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALA  222 (284)
T ss_dssp             TTTTTCTTCCEEECCSSC-CCEECTTTT--TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHT
T ss_pred             hHhccccchhhcccccCc-ccccchhhh--ccccccchhhhhhccccccChhHhhhhhhcccccccccc-cccccccccc
Confidence            345566666666665442 344321122  245667777776644432211112567788888887654 44444 4677


Q ss_pred             CCCCCCEEEEcCC
Q 038559           89 FVATLKQLQILPL  101 (137)
Q Consensus        89 ~l~sL~~L~i~~~  101 (137)
                      .+.+|++|++.+.
T Consensus       223 ~~~~L~~L~l~~N  235 (284)
T d1ozna_         223 PLRALQYLRLNDN  235 (284)
T ss_dssp             TCTTCCEEECCSS
T ss_pred             cccccCEEEecCC
Confidence            7888888888764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.73  E-value=6.2e-05  Score=50.85  Aligned_cols=83  Identities=16%  Similarity=0.067  Sum_probs=58.7

Q ss_pred             Cccceeeeccccccee-ccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccc-cccCCCCC
Q 038559           16 PNLKTLTLWLASKAKQ-LEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLE-DLQFVATL   93 (137)
Q Consensus        16 p~L~~L~L~~~~~~~~-l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~-gl~~l~sL   93 (137)
                      +++++|.|.+.. +.. ++...|  +.+++|+.|++.+.............+++|+.|.+.+. ++..+|. .+.++++|
T Consensus        29 ~~l~~L~Ls~N~-i~~~~~~~~f--~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N-~l~~l~~~~F~~l~~L  104 (192)
T d1w8aa_          29 LHTTELLLNDNE-LGRISSDGLF--GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQL  104 (192)
T ss_dssp             TTCSEEECCSCC-CCSBCCSCSG--GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTC
T ss_pred             CCCCEEEeCCCC-Cccccccccc--CCCceEeeeeccccccccccccccccccccceeeeccc-cccccCHHHHhCCCcc
Confidence            479999998543 322 211122  36889999999886554332222356899999999765 5888876 47889999


Q ss_pred             CEEEEcCCC
Q 038559           94 KQLQILPLL  102 (137)
Q Consensus        94 ~~L~i~~~~  102 (137)
                      ++|+++++.
T Consensus       105 ~~L~L~~N~  113 (192)
T d1w8aa_         105 KTLNLYDNQ  113 (192)
T ss_dssp             CEEECCSSC
T ss_pred             cccccCCcc
Confidence            999998875

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.72  E-value=4.5e-07  Score=62.66  Aligned_cols=37  Identities=19%  Similarity=0.184  Sum_probs=26.3

Q ss_pred             cCCccceEeeccCccccccc--ccccCCCCCCEEEEcCCC
Q 038559           65 ALPSLKYLQLHKCLKLRMLL--EDLQFVATLKQLQILPLL  102 (137)
Q Consensus        65 ~mp~L~~L~i~~c~~l~~lp--~gl~~l~sL~~L~i~~~~  102 (137)
                      .+++|+.|.+.++ ++..++  ..+..+++|+.|++.++|
T Consensus       113 ~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         113 KLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             ccccccccccccc-hhccccccccccCCCccceeecCCCc
Confidence            4677777777654 244444  256788999999998876

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=2.5e-05  Score=51.88  Aligned_cols=86  Identities=14%  Similarity=0.012  Sum_probs=63.2

Q ss_pred             ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccc-c
Q 038559           10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDL-Q   88 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl-~   88 (137)
                      +.+....+|+.|+|.++. +..++   .-...+++|+.|++++..+...  ..-..+|+|+.|.+.+|. +..+|.++ .
T Consensus        12 ~~~~n~~~lr~L~L~~n~-I~~i~---~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~-i~~l~~~~~~   84 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYK-IPVIE---NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNR-ICRIGEGLDQ   84 (162)
T ss_dssp             CEEECTTSCEEEECTTSC-CCSCC---CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSC-CCEECSCHHH
T ss_pred             HhccCcCcCcEEECCCCC-CCccC---ccccccccCCEEECCCCCCCcc--CCcccCcchhhhhccccc-ccCCCccccc
Confidence            446677889999998653 44441   1123689999999999655432  123679999999999875 77787754 5


Q ss_pred             CCCCCCEEEEcCCC
Q 038559           89 FVATLKQLQILPLL  102 (137)
Q Consensus        89 ~l~sL~~L~i~~~~  102 (137)
                      .+++|++|.+.++.
T Consensus        85 ~l~~L~~L~L~~N~   98 (162)
T d1a9na_          85 ALPDLTELILTNNS   98 (162)
T ss_dssp             HCTTCCEEECCSCC
T ss_pred             cccccccceecccc
Confidence            68999999998875

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=3.4e-06  Score=60.89  Aligned_cols=37  Identities=19%  Similarity=0.281  Sum_probs=19.4

Q ss_pred             CCccceEeeccCcccc-cccccccCCCCCCEEEEcCCC
Q 038559           66 LPSLKYLQLHKCLKLR-MLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        66 mp~L~~L~i~~c~~l~-~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      +|+|++|.+.+|+.++ ..+..+..+++|++|.+++|.
T Consensus       174 ~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~  211 (284)
T d2astb2         174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  211 (284)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             cccccccccccccCCCchhhhhhcccCcCCEEECCCCC
Confidence            4556666665555443 223344455556666665554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.57  E-value=0.00015  Score=49.83  Aligned_cols=55  Identities=16%  Similarity=0.171  Sum_probs=24.5

Q ss_pred             CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEc
Q 038559           41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQIL   99 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~   99 (137)
                      .+++|++|++.+..+...  ..-+.+|+|+.|.+.+| +++.+|. +.++++|+.|.++
T Consensus       171 ~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N-~lt~i~~-l~~l~~L~~L~ls  225 (227)
T d1h6ua2         171 NLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLT  225 (227)
T ss_dssp             TCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEE
T ss_pred             ccccceecccCCCccCCC--hhhcCCCCCCEEECcCC-cCCCCcc-cccCCCCCEEEee
Confidence            345555555554322211  11234555555555554 3444442 4455555555543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.56  E-value=0.00012  Score=52.25  Aligned_cols=88  Identities=14%  Similarity=0.064  Sum_probs=56.8

Q ss_pred             ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCccccccccc---
Q 038559           10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLED---   86 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~g---   86 (137)
                      ..+..++++++|.+.++. +..++...+  .++++|++|++.+..+... ...-+.+++|+.|.+.++ +++.++..   
T Consensus       189 ~~~~~~~~l~~L~~s~n~-l~~~~~~~~--~~l~~L~~L~L~~N~L~~l-p~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~  263 (305)
T d1xkua_         189 ASLKGLNNLAKLGLSFNS-ISAVDNGSL--ANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNN-NISAIGSNDFC  263 (305)
T ss_dssp             GGGTTCTTCCEEECCSSC-CCEECTTTG--GGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSS-CCCCCCTTSSS
T ss_pred             hHhhcccccccccccccc-ccccccccc--cccccceeeeccccccccc-ccccccccCCCEEECCCC-ccCccChhhcc
Confidence            345555666666655332 333311111  2578999999998655432 223367999999999886 47776542   


Q ss_pred             ----ccCCCCCCEEEEcCCC
Q 038559           87 ----LQFVATLKQLQILPLL  102 (137)
Q Consensus        87 ----l~~l~sL~~L~i~~~~  102 (137)
                          ...+.+|+.|.+.+++
T Consensus       264 ~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         264 PPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             CSSCCTTSCCCSEEECCSSS
T ss_pred             CcchhcccCCCCEEECCCCc
Confidence                3456889999999987

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.56  E-value=0.00013  Score=49.95  Aligned_cols=88  Identities=20%  Similarity=0.171  Sum_probs=50.9

Q ss_pred             ccccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccce-----------eee---------cCCcCC
Q 038559            8 SALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEW-----------TEI---------EEGALP   67 (137)
Q Consensus         8 ~l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~-----------~~~---------~~g~mp   67 (137)
                      +++.++.|++|++|.+.++. +..++    ....+++|+.|.+.+......           +..         ..+.++
T Consensus        82 ~l~~~~~l~~L~~L~l~~n~-i~~l~----~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~  156 (210)
T d1h6ta2          82 DIKPLANLKNLGWLFLDENK-VKDLS----SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLT  156 (210)
T ss_dssp             CCGGGTTCTTCCEEECCSSC-CCCGG----GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred             CccccccCcccccccccccc-ccccc----cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            45668899999999998653 44441    234678888888876432211           000         012355


Q ss_pred             ccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559           68 SLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        68 ~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      +|+.+.+.++ ++..++ .+.++++|++|+++++.
T Consensus       157 ~L~~l~l~~n-~l~~i~-~l~~l~~L~~L~Ls~N~  189 (210)
T d1h6ta2         157 KLDTLSLEDN-QISDIV-PLAGLTKLQNLYLSKNH  189 (210)
T ss_dssp             TCSEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC
T ss_pred             cccccccccc-cccccc-cccCCCCCCEEECCCCC
Confidence            5666665554 244443 25566677777776654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=8.5e-06  Score=58.69  Aligned_cols=36  Identities=19%  Similarity=0.283  Sum_probs=15.8

Q ss_pred             CCccceEeeccCcccc--cccccccC-CCCCCEEEEcCC
Q 038559           66 LPSLKYLQLHKCLKLR--MLLEDLQF-VATLKQLQILPL  101 (137)
Q Consensus        66 mp~L~~L~i~~c~~l~--~lp~gl~~-l~sL~~L~i~~~  101 (137)
                      .|+|+.|.+.+|.++.  .++..+.+ .++|++|.+.+|
T Consensus       120 ~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~  158 (284)
T d2astb2         120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  158 (284)
T ss_dssp             CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             HHhccccccccccccccccchhhhcccccccchhhhccc
Confidence            4555555555554432  12221211 245555555554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.52  E-value=0.00023  Score=51.79  Aligned_cols=35  Identities=20%  Similarity=0.223  Sum_probs=16.5

Q ss_pred             cCCccceEeeccCcccccccccccCCCCCCEEEEcCC
Q 038559           65 ALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPL  101 (137)
Q Consensus        65 ~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~  101 (137)
                      .+++++.|.+.++ +++.++. +.++++|++|++++|
T Consensus       305 ~~~~l~~L~ls~n-~l~~l~~-l~~l~~L~~L~L~~n  339 (384)
T d2omza2         305 NLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFANN  339 (384)
T ss_dssp             GCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS
T ss_pred             hhcccCeEECCCC-CCCCCcc-cccCCCCCEEECCCC
Confidence            3455555555443 2333332 444555555555544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=0.00018  Score=50.99  Aligned_cols=94  Identities=18%  Similarity=0.093  Sum_probs=46.1

Q ss_pred             ccccccCCCccceeeecccccceeccce-------------------ecCcc---CcccccEEEeccccccceeeecCCc
Q 038559            8 SALVIQLLPNLKTLTLWLASKAKQLEKE-------------------FCSVG---GFHKLEILIIAFHVLEEWTEIEEGA   65 (137)
Q Consensus         8 ~l~~L~~Lp~L~~L~L~~~~~~~~l~~~-------------------~~~~~---~f~~Lk~L~l~~~~~~~~~~~~~g~   65 (137)
                      +...++.+++|++|.+..+. ...+...                   .+..+   .+++|+.|++.+..+.....-.-..
T Consensus        97 ~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~  175 (284)
T d1ozna_          97 DPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG  175 (284)
T ss_dssp             CTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             cchhhcccccCCEEecCCcc-cccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcc
Confidence            34467788889988887432 1111000                   00011   2344555555543322111001123


Q ss_pred             CCccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559           66 LPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        66 mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      +++|+.+.+..+.-..-.|..+.++++|++|+++++.
T Consensus       176 l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~  212 (284)
T d1ozna_         176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN  212 (284)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             ccccchhhhhhccccccChhHhhhhhhcccccccccc
Confidence            5666666665543223335566667777777776654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.0002  Score=49.32  Aligned_cols=82  Identities=26%  Similarity=0.275  Sum_probs=56.3

Q ss_pred             CccceeeecccccceeccceecCccCcccccEEEeccccccceeeecC---CcCCccceEeeccCcccccccc-cccCCC
Q 038559           16 PNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEE---GALPSLKYLQLHKCLKLRMLLE-DLQFVA   91 (137)
Q Consensus        16 p~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~---g~mp~L~~L~i~~c~~l~~lp~-gl~~l~   91 (137)
                      +++++|+|.+.. +..++...|  .++++|++|++.+......  ++.   ..++.++.+.+..|.++..++. .+.+++
T Consensus        29 ~~l~~L~Ls~n~-i~~l~~~~f--~~l~~L~~L~ls~n~~~~~--i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~  103 (242)
T d1xwdc1          29 RNAIELRFVLTK-LRVIQKGAF--SGFGDLEKIEISQNDVLEV--IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP  103 (242)
T ss_dssp             SCCSEEEEESCC-CCEECTTTT--TTCTTCCEEEEESCTTCCE--ECSSSEESCTTCCEEEEECCTTCCEECTTSEECCT
T ss_pred             CCCCEEECcCCc-CCccChhHh--hccchhhhhhhccccccce--eeccccccccccccccccccccccccccccccccc
Confidence            379999998553 555532222  3688999999987554433  222   3477888888877777766554 567888


Q ss_pred             CCCEEEEcCCC
Q 038559           92 TLKQLQILPLL  102 (137)
Q Consensus        92 sL~~L~i~~~~  102 (137)
                      +|+++.+.++.
T Consensus       104 ~L~~l~l~~~~  114 (242)
T d1xwdc1         104 NLQYLLISNTG  114 (242)
T ss_dssp             TCCEEEEESCC
T ss_pred             cccccccchhh
Confidence            89999887764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.35  E-value=0.00021  Score=45.16  Aligned_cols=76  Identities=18%  Similarity=0.157  Sum_probs=54.6

Q ss_pred             ceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEE
Q 038559           19 KTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQI   98 (137)
Q Consensus        19 ~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i   98 (137)
                      +.|+|++.. +..+    ..-+.+++|++|++.+..+... ...-+.|++|+.|.+.+. .++.+| ++.++++|++|++
T Consensus         1 R~L~Ls~n~-l~~l----~~l~~l~~L~~L~ls~N~l~~l-p~~~~~l~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~l   72 (124)
T d1dcea3           1 RVLHLAHKD-LTVL----CHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLL   72 (124)
T ss_dssp             SEEECTTSC-CSSC----CCGGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEEC
T ss_pred             CEEEcCCCC-CCCC----cccccCCCCCEEECCCCccCcc-hhhhhhhhcccccccccc-cccccC-ccccccccCeEEC
Confidence            456676432 3333    2345789999999998655432 223467999999999875 577776 5889999999999


Q ss_pred             cCCC
Q 038559           99 LPLL  102 (137)
Q Consensus        99 ~~~~  102 (137)
                      .++.
T Consensus        73 ~~N~   76 (124)
T d1dcea3          73 CNNR   76 (124)
T ss_dssp             CSSC
T ss_pred             CCCc
Confidence            8865

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.29  E-value=0.00015  Score=51.91  Aligned_cols=54  Identities=26%  Similarity=0.071  Sum_probs=37.0

Q ss_pred             CcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCCEEEEcCCC
Q 038559           41 GFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      .+++|++|++.++.+...   . ..+|+|+.|.+.+| +++.+|..   +++|++|++++++
T Consensus       282 ~~~~L~~L~Ls~N~l~~l---p-~~~~~L~~L~L~~N-~L~~l~~~---~~~L~~L~L~~N~  335 (353)
T d1jl5a_         282 LPPSLEELNVSNNKLIEL---P-ALPPRLERLIASFN-HLAEVPEL---PQNLKQLHVEYNP  335 (353)
T ss_dssp             CCTTCCEEECCSSCCSCC---C-CCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC
T ss_pred             cCCCCCEEECCCCccCcc---c-cccCCCCEEECCCC-cCCccccc---cCCCCEEECcCCc
Confidence            467888888887654422   1 34788888888665 47777753   4577888887775

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.02  E-value=6.8e-06  Score=56.48  Aligned_cols=84  Identities=18%  Similarity=0.239  Sum_probs=59.4

Q ss_pred             cccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCC
Q 038559           11 VIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFV   90 (137)
Q Consensus        11 ~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l   90 (137)
                      .++.|++|++|.|.++. ++.+    ..-..+++|+.|++.++.+... ......+++|+.|.+.++ +++.++ ++.++
T Consensus        43 sl~~L~~L~~L~Ls~n~-I~~i----~~l~~l~~L~~L~Ls~N~i~~i-~~~~~~~~~L~~L~l~~N-~i~~l~-~~~~l  114 (198)
T d1m9la_          43 TLSTLKACKHLALSTNN-IEKI----SSLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYN-QIASLS-GIEKL  114 (198)
T ss_dssp             HHHHTTTCCEEECSEEE-ESCC----CCHHHHTTCCEEECCEEEECSC-SSHHHHHHHCCEEECSEE-ECCCHH-HHHHH
T ss_pred             HHhcccccceeECcccC-CCCc----ccccCCccccChhhcccccccc-cccccccccccccccccc-cccccc-ccccc
Confidence            47789999999998543 4444    1234789999999998644322 111234678999999876 566664 47778


Q ss_pred             CCCCEEEEcCCC
Q 038559           91 ATLKQLQILPLL  102 (137)
Q Consensus        91 ~sL~~L~i~~~~  102 (137)
                      ++|+.|+++++.
T Consensus       115 ~~L~~L~L~~N~  126 (198)
T d1m9la_         115 VNLRVLYMSNNK  126 (198)
T ss_dssp             HHSSEEEESEEE
T ss_pred             ccccccccccch
Confidence            999999998764

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.02  E-value=0.00063  Score=48.65  Aligned_cols=88  Identities=14%  Similarity=0.061  Sum_probs=56.8

Q ss_pred             ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccC
Q 038559           10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQF   89 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~   89 (137)
                      +.+++|++|++|+|.++. +..+.  ......+++|+.+.+........+....+.++.|+.+.+.++.....+|..+..
T Consensus        95 ~~i~~L~~L~~L~Ls~N~-l~~~~--~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~  171 (313)
T d1ogqa_          95 PAIAKLTQLHYLYITHTN-VSGAI--PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS  171 (313)
T ss_dssp             GGGGGCTTCSEEEEEEEC-CEEEC--CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC
T ss_pred             cccccccccchhhhcccc-ccccc--cccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccc
Confidence            358999999999998553 33331  111235778888888764333222223467889999988877655567877777


Q ss_pred             CCCC-CEEEEcC
Q 038559           90 VATL-KQLQILP  100 (137)
Q Consensus        90 l~sL-~~L~i~~  100 (137)
                      +.++ +.+.+..
T Consensus       172 l~~l~~~l~~~~  183 (313)
T d1ogqa_         172 FSKLFTSMTISR  183 (313)
T ss_dssp             CCTTCCEEECCS
T ss_pred             cccccccccccc
Confidence            7665 5555443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.0027  Score=41.30  Aligned_cols=69  Identities=20%  Similarity=0.129  Sum_probs=45.1

Q ss_pred             CCCCccccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeecc
Q 038559            4 LSENSALVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHK   76 (137)
Q Consensus         4 l~~~~l~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~   76 (137)
                      |+.-+...+..|++|+.|.|.+.. +..++++.|  .++++|++|++.+..+... ....-..++|+.|.+.+
T Consensus        44 l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f--~~l~~L~~L~Ls~N~l~~l-~~~~~~~~~l~~L~L~~  112 (156)
T d2ifga3          44 LQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAF--HFTPRLSRLNLSFNALESL-SWKTVQGLSLQELVLSG  112 (156)
T ss_dssp             CCEECGGGSCSCCCCSEEECCSSC-CCEECTTGG--GSCSCCCEEECCSSCCSCC-CSTTTCSCCCCEEECCS
T ss_pred             ccccCchhhccccccCcceeeccc-cCCcccccc--cccccccceeccCCCCccc-ChhhhccccccccccCC
Confidence            333344568899999999998653 666632222  3678999999998654422 22222345788998864

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.40  E-value=0.004  Score=44.08  Aligned_cols=75  Identities=24%  Similarity=0.238  Sum_probs=51.0

Q ss_pred             CCccceeeecccccceeccceecCccCcccccEEEeccccccceeeecCCcCCccceEeeccCcccccccccccCCCCCC
Q 038559           15 LPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIEEGALPSLKYLQLHKCLKLRMLLEDLQFVATLK   94 (137)
Q Consensus        15 Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~~g~mp~L~~L~i~~c~~l~~lp~gl~~l~sL~   94 (137)
                      +|+|++|.|.+. .+..+|      +.+++|+.|.+.+......   . .-.++|+.|.+.++ .+..+|. +.++++|+
T Consensus        57 ~~~L~~L~Ls~N-~l~~lp------~~~~~L~~L~l~~n~l~~l---~-~lp~~L~~L~L~~n-~l~~lp~-~~~l~~L~  123 (353)
T d1jl5a_          57 PPHLESLVASCN-SLTELP------ELPQSLKSLLVDNNNLKAL---S-DLPPLLEYLGVSNN-QLEKLPE-LQNSSFLK  123 (353)
T ss_dssp             CTTCSEEECCSS-CCSSCC------CCCTTCCEEECCSSCCSCC---C-SCCTTCCEEECCSS-CCSSCCC-CTTCTTCC
T ss_pred             CCCCCEEECCCC-CCcccc------cchhhhhhhhhhhcccchh---h-hhcccccccccccc-ccccccc-hhhhccce
Confidence            468899988743 355552      2467899998887543321   1 22346999998766 4777875 56789999


Q ss_pred             EEEEcCCC
Q 038559           95 QLQILPLL  102 (137)
Q Consensus        95 ~L~i~~~~  102 (137)
                      +|++.++.
T Consensus       124 ~L~l~~~~  131 (353)
T d1jl5a_         124 IIDVDNNS  131 (353)
T ss_dssp             EEECCSSC
T ss_pred             eecccccc
Confidence            99987664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.0066  Score=41.29  Aligned_cols=66  Identities=17%  Similarity=0.171  Sum_probs=35.9

Q ss_pred             ccccCCCccceeeecccccceeccceecCccCcccccEEEeccccccceeeec-CCcCCccceEeeccC
Q 038559           10 LVIQLLPNLKTLTLWLASKAKQLEKEFCSVGGFHKLEILIIAFHVLEEWTEIE-EGALPSLKYLQLHKC   77 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~~~~~-~g~mp~L~~L~i~~c   77 (137)
                      ..+.++++|++|+|.++.....++...+  ..+++++.+.+...+........ -..+++|+.+.+..+
T Consensus        47 ~~f~~l~~L~~L~ls~n~~~~~i~~~~f--~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~  113 (242)
T d1xwdc1          47 GAFSGFGDLEKIEISQNDVLEVIEADVF--SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT  113 (242)
T ss_dssp             TTTTTCTTCCEEEEESCTTCCEECSSSE--ESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESC
T ss_pred             hHhhccchhhhhhhccccccceeecccc--ccccccccccccccccccccccccccccccccccccchh
Confidence            3578899999999985543333311111  24566677666543222221111 135777777777654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.0027  Score=41.50  Aligned_cols=61  Identities=21%  Similarity=0.128  Sum_probs=39.5

Q ss_pred             CcccccEEEeccccccceeeec--CCcCCccceEeeccCcccccccc-cccCCCCCCEEEEcCCC
Q 038559           41 GFHKLEILIIAFHVLEEWTEIE--EGALPSLKYLQLHKCLKLRMLLE-DLQFVATLKQLQILPLL  102 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~~~~~~--~g~mp~L~~L~i~~c~~l~~lp~-gl~~l~sL~~L~i~~~~  102 (137)
                      .+++|++|++++..+...-.+.  .+.+|+|+.|.+.+. .++.++. ......+|++|++.+.|
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCC
Confidence            5889999999986543221111  135899999999764 3555554 11234478889998877

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.40  E-value=0.011  Score=43.14  Aligned_cols=91  Identities=19%  Similarity=0.162  Sum_probs=57.8

Q ss_pred             ccccCCCccceeeecccccceeccceecC--ccCcccccEEEeccccccc--eeeecC---CcCCccceEeeccCcccc-
Q 038559           10 LVIQLLPNLKTLTLWLASKAKQLEKEFCS--VGGFHKLEILIIAFHVLEE--WTEIEE---GALPSLKYLQLHKCLKLR-   81 (137)
Q Consensus        10 ~~L~~Lp~L~~L~L~~~~~~~~l~~~~~~--~~~f~~Lk~L~l~~~~~~~--~~~~~~---g~mp~L~~L~i~~c~~l~-   81 (137)
                      ..++.+++|+.|.|.+|. +..-+-+.+.  -...++|+.|++.+..+..  +..+..   ..-++|+.|.+.+|. +. 
T Consensus        21 ~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-it~   98 (460)
T d1z7xw1          21 ELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTG   98 (460)
T ss_dssp             HHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBG
T ss_pred             HHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCC-ccc
Confidence            457788999999998774 2211000000  1367899999998754321  000111   123579999999885 42 


Q ss_pred             ----cccccccCCCCCCEEEEcCCC
Q 038559           82 ----MLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        82 ----~lp~gl~~l~sL~~L~i~~~~  102 (137)
                          .++..+...++|++|.+.++.
T Consensus        99 ~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          99 AGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             GGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             cccccccchhhcccccccccccccc
Confidence                356678889999999998875

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=87.33  E-value=0.072  Score=37.90  Aligned_cols=14  Identities=43%  Similarity=0.883  Sum_probs=7.9

Q ss_pred             cCCccceEeeccCc
Q 038559           65 ALPSLKYLQLHKCL   78 (137)
Q Consensus        65 ~mp~L~~L~i~~c~   78 (137)
                      ..++|+.|.+.+|.
T Consensus       241 ~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         241 SWPNLRELGLNDCL  254 (344)
T ss_dssp             GCTTCCEEECTTCC
T ss_pred             ccccchhhhhhcCc
Confidence            35556666665553

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.30  E-value=0.13  Score=33.08  Aligned_cols=89  Identities=12%  Similarity=0.140  Sum_probs=53.5

Q ss_pred             ccCCCccceeeecccccce--eccceec-CccCcccccEEEeccccccce--eeec--CCcCCccceEeeccCcc----c
Q 038559           12 IQLLPNLKTLTLWLASKAK--QLEKEFC-SVGGFHKLEILIIAFHVLEEW--TEIE--EGALPSLKYLQLHKCLK----L   80 (137)
Q Consensus        12 L~~Lp~L~~L~L~~~~~~~--~l~~~~~-~~~~f~~Lk~L~l~~~~~~~~--~~~~--~g~mp~L~~L~i~~c~~----l   80 (137)
                      ...-|+|+.|.|.+...+.  .+. .++ .-...++|++|.+.++.+..-  ..+.  ....+.|+.|.+.+|.-    .
T Consensus        11 ~~n~~~L~~L~L~~~~~i~~~~~~-~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~   89 (167)
T d1pgva_          11 REDDTDLKEVNINNMKRVSKERIR-SLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL   89 (167)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHH-HHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HhCCCCCcEEEeCCCCCCCHHHHH-HHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHH
Confidence            3456999999998543221  110 011 112457799999988543211  0111  12467899999988852    1


Q ss_pred             ccccccccCCCCCCEEEEcCC
Q 038559           81 RMLLEDLQFVATLKQLQILPL  101 (137)
Q Consensus        81 ~~lp~gl~~l~sL~~L~i~~~  101 (137)
                      ..+-.++.+-++|++|.+.++
T Consensus        90 ~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          90 ARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHHhCCcCCEEECCCC
Confidence            234446778889999999765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.72  E-value=0.056  Score=39.05  Aligned_cols=83  Identities=17%  Similarity=0.210  Sum_probs=50.2

Q ss_pred             Cccceeeecccc-cceeccceecCccCcccccEEEeccccccce--eeec--CCcCCccceEeeccCccc-----ccccc
Q 038559           16 PNLKTLTLWLAS-KAKQLEKEFCSVGGFHKLEILIIAFHVLEEW--TEIE--EGALPSLKYLQLHKCLKL-----RMLLE   85 (137)
Q Consensus        16 p~L~~L~L~~~~-~~~~l~~~~~~~~~f~~Lk~L~l~~~~~~~~--~~~~--~g~mp~L~~L~i~~c~~l-----~~lp~   85 (137)
                      ++|+.|+|.... ....+ .+.  ...+++|++|.+.++.+..-  ..+.  ...+|+|+.|.+.++. +     ..+..
T Consensus         2 ~~l~~ld~~~~~i~~~~~-~~l--~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~   77 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARW-AEL--LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQ   77 (460)
T ss_dssp             EEEEEEEEESCCCCHHHH-HHH--HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHH
T ss_pred             CCCCEEEeeCCcCChHHH-HHH--HHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHH
Confidence            478899996322 11111 001  12578999999998753210  0011  1468999999998764 3     23444


Q ss_pred             cccC-CCCCCEEEEcCCC
Q 038559           86 DLQF-VATLKQLQILPLL  102 (137)
Q Consensus        86 gl~~-l~sL~~L~i~~~~  102 (137)
                      ++.. ..+|++|.+++|.
T Consensus        78 ~l~~~~~~L~~L~L~~n~   95 (460)
T d1z7xw1          78 GLQTPSCKIQKLSLQNCC   95 (460)
T ss_dssp             TTCSTTCCCCEEECTTSC
T ss_pred             HHhcCCCCCCEEECCCCC
Confidence            4443 3589999999886

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=80.85  E-value=0.18  Score=35.70  Aligned_cols=62  Identities=16%  Similarity=0.054  Sum_probs=39.9

Q ss_pred             CcccccEEEeccccccc-----eeeecCCcCCccceEeeccCcc----cccccccccCCCCCCEEEEcCCC
Q 038559           41 GFHKLEILIIAFHVLEE-----WTEIEEGALPSLKYLQLHKCLK----LRMLLEDLQFVATLKQLQILPLL  102 (137)
Q Consensus        41 ~f~~Lk~L~l~~~~~~~-----~~~~~~g~mp~L~~L~i~~c~~----l~~lp~gl~~l~sL~~L~i~~~~  102 (137)
                      .+++|++|.+..+....     .+......+++|+.|.+..+.-    ...+...+.+.++|++|.+.+|.
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  254 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCc
Confidence            35678888887643211     1101123578899999977652    23355567788899999998886

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.59  E-value=0.11  Score=33.35  Aligned_cols=35  Identities=26%  Similarity=0.208  Sum_probs=16.2

Q ss_pred             CCccceEeeccCccccc---ccccccCCCCCCEEEEcCC
Q 038559           66 LPSLKYLQLHKCLKLRM---LLEDLQFVATLKQLQILPL  101 (137)
Q Consensus        66 mp~L~~L~i~~c~~l~~---lp~gl~~l~sL~~L~i~~~  101 (137)
                      +|.|+.|.+.+.. ++.   ++..++.+++|+.|+++++
T Consensus        64 ~~~L~~L~Ls~N~-i~~l~~~~~~~~~l~~L~~L~Ls~N  101 (162)
T d1koha1          64 IPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGN  101 (162)
T ss_dssp             CTTCCCCCCCSSC-CCCCSGGGTHHHHSTTCCCCCCTTS
T ss_pred             CCCCCEeeCCCcc-ccCCchhHHHHhhCCcccccccccC
Confidence            5555555554432 222   2233344555555555544