Citrus Sinensis ID: 038564

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350---

MVRNHSNHGILIVGNYCHDVLIRNGTVLAETLGGAASFISNVLNGLSISCSLIAKVGHDFKYETSYRPIIVPTSKTTVFHAYFDSISAPSGHADRVLKRVCSCEPITPSDLPDGKFDYGMAVGVGGEILPETLEKMLEICNVVLVDIQSVIRVFDSVDGTVNPVPLKESGFYHLLPKIGFLKASSEEALFMDVEEVRKLCCVVVTNGREGSEVYYRDGKVKVSPFLANQIDPTGAGDSFLGGLVTGLVQGLAVPDAALLGNFFGSITVAQIGLPKFDSRVLQRVKDEVQRRKLSCSERRDEEIEFMKPEGHEQFHSFLCSAKLVSACAMQECLKDFPGITREQGFLSQNNGQI

cccccccccEEEEcccEEEEEEccccccccccccHHHHHHHHHHHcccccEEEEEEccccccccccccccccccccEEEEEEEccccccccccccEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHccEEEEEccccEEEEcccccccccccccccHHHHHcccccEEEccHHHHHcccHHHHccccEEEEEcccccEEEEEccEEEEEcccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc

ccccccccEEEEEEccEEEEEEcccccccccccHHHHHHHHHHHHccccEEEEEEEccccHHHcccccEEEccccEEEEEEEEcccccccccHHHHHHEHcccccccHHHcccccccEEEEccccccccHHHHHHHHHHccEEEEEHHHHHHHccccccEEEEcccccccHHHHHcHccEEEccHHHHHHccHHHHcccEEEEEEcccccEEEEEcccEEEEcccccEEccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccEEEEcccHHHHHHHHHHHHHHcccHHHHHHHccccccccccccEccccccc

mvrnhsnhgilIVGNYCHDVLIRNGTVLAETLGGAASFISNVLNGLSISCSLIAKvghdfkyetsyrpiivptskttvfhayfdsisapsghadRVLKRVcscepitpsdlpdgkfdygmavgvggeiLPETLEKMLEICNVVLVDIQSVIRVFDsvdgtvnpvplkesgfyhllpkigflkASSEEALFMDVEEVRKLCCVVVtngregsevyyrdgkvkvspflanqidptgagdsflGGLVTGLVQglavpdaallgnfFGSITVaqiglpkfdsRVLQRVKDEVQRRKLSCSERRDEeiefmkpegheqFHSFLCSAKLVSACAMQEClkdfpgitreqgflsqnngqi

mvrnhsnhGILIVGNYCHDVLIRNGTVLAETLGGAASFISNVLNGLSISCSLIAKVGHDFKYETSYRPIIVPTSKTTVFHAYFDSISAPSGHADRVLKRVCSCEPitpsdlpdgkfDYGMAVGVGGEILPETLEKMLEICNVVLVDIQSVIRVFDSVDGTVNPVPLKESGFYHLLPKIGFLKASSEEALFMDVEEVRKLCCVVVtngregsevyyrdgkvkVSPFLANQIDPTGAGDSFLGGLVTGLVQGLAVPDAALLGNFFGSITVAQIglpkfdsrvlqrvkdevqrrklscserrdEEIEFMKPEGHEQFHSFLCSAKLVSACAMQECLKDFPgitreqgflsqnngqi

MVRNHSNHGILIVGNYCHDVLIRNGTVLAETLGGAASFISNVLNGLSISCSLIAKVGHDFKYETSYRPIIVPTSKTTVFHAYFDSISAPSGHADRVLKRVCSCEPITPSDLPDGKFDYGMAVGVGGEILPETLEKMLEICNVVLVDIQSVIRVFDSVDGTVNPVPLKESGFYHLLPKIGFLKASSEEALFMDVEEVRKLCCVVVTNGREGSEVYYRDGKVKVSPFLANQIDPTGAGDSFlgglvtglvqglavPDAALLGNFFGSITVAQIGLPKFDSRVLQRVKDEVQRRKLSCSERRDEEIEFMKPEGHEQFHSFLCSAKLVSACAMQECLKDFPGITREQGFLSQNNGQI

*******HGILIVGNYCHDVLIRNGTVLAETLGGAASFISNVLNGLSISCSLIAKVGHDFKYETSYRPIIVPTSKTTVFHAYFDSISAPSGHADRVLKRVCSCEPITPSDLPDGKFDYGMAVGVGGEILPETLEKMLEICNVVLVDIQSVIRVFDSVDGTVNPVPLKESGFYHLLPKIGFLKASSEEALFMDVEEVRKLCCVVVTNGREGSEVYYRDGKVKVSPFLANQIDPTGAGDSFLGGLVTGLVQGLAVPDAALLGNFFGSITVAQIGLPKFDSRVLQRV***************************EQFHSFLCSAKLVSACAMQECLKDFPGITR************

******N***LIVGNYCHDVLIRNGTVLAETLGGAASFISNVLNGLSISCSLIAKVGHDFKYETSYRPIIVPTSKTTVFHAYFDSISAPSGHADRVLKRVCSCEPITPSDLPDGKFDYGMAVGVGGEILPETLEKMLEICNVVLVDIQSVIRVFDSVDGTVNPVPLKESGFYHLLPKIGFLKASSEEALFMDVEEVRKLCCVVVTNGREGSEVYYRDGKVKVSPFLANQIDPTGAGDSFLGGLVTGLVQGLAVPDAALLGNFFGSITVAQIGLPKFDSRVLQRVKDEVQRRKLSCSERRDEEIEFMKPEG*******LCSAKLV************************N****

****HSNHGILIVGNYCHDVLIRNGTVLAETLGGAASFISNVLNGLSISCSLIAKVGHDFKYETSYRPIIVPTSKTTVFHAYFDSISAPSGHADRVLKRVCSCEPITPSDLPDGKFDYGMAVGVGGEILPETLEKMLEICNVVLVDIQSVIRVFDSVDGTVNPVPLKESGFYHLLPKIGFLKASSEEALFMDVEEVRKLCCVVVTNGREGSEVYYRDGKVKVSPFLANQIDPTGAGDSFLGGLVTGLVQGLAVPDAALLGNFFGSITVAQIGLPKFDSRVLQRVKDEVQRRKLSCSERRDEEIEFMKPEGHEQFHSFLCSAKLVSACAMQECLKDFPGITREQGFLSQ*****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		353	2.2.26 [Sep-21-2011]
Q57849		302	Uncharacterized sugar kin	yes	no	0.252	0.294	0.326	6e-07
Q1H3A0		488	Bifunctional protein HldE	no	no	0.246	0.178	0.344	8e-06
Q63B75		332	5-dehydro-2-deoxygluconok	yes	no	0.195	0.207	0.371	5e-05
Q4V1F7		332	5-dehydro-2-deoxygluconok	yes	no	0.195	0.207	0.371	6e-05
Q81QB7		332	5-dehydro-2-deoxygluconok	yes	no	0.195	0.207	0.371	6e-05
C3LHY4		332	5-dehydro-2-deoxygluconok	yes	no	0.195	0.207	0.371	6e-05
C3PAZ0		332	5-dehydro-2-deoxygluconok	yes	no	0.195	0.207	0.371	6e-05
Q6HIK4		332	5-dehydro-2-deoxygluconok	yes	no	0.195	0.207	0.371	7e-05
C1EVJ1		332	5-dehydro-2-deoxygluconok	yes	no	0.195	0.207	0.371	7e-05
A0REB4		332	5-dehydro-2-deoxygluconok	yes	no	0.195	0.207	0.371	7e-05

>sp\|Q57849\|Y406_METJA Uncharacterized sugar kinase MJ0406 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0406 PE=1 SV=1	Back alignment and function desciption

 Score = 55.5 bits (132), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 6/95 (6%)

Query: 196 VRKLCCVVVTNGREGSEVYYRDGKVKVSPFLANQ-IDPTGAGDSFLGGLVTGLVQGLAVP 254
           + ++  ++VT G +GS +Y +D K+++    A + IDPTGAGDS+  G ++  V+G  + 
Sbjct: 205 LERVDALIVTKGSKGSVIYTKDKKIEIPCIKAGKVIDPTGAGDSYRAGFLSAYVKGYDLE 264

Query: 255 DAALLGNFFGSITVA----QIGLPKFDSRVLQRVK 285
              L+G    S  V     Q  LP +D +V++R++
Sbjct: 265 KCGLIGAATASFVVEAKGCQTNLPTWD-KVVERLE 298

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: -

>sp\|Q1H3A0\|HLDE_METFK Bifunctional protein HldE OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=hldE PE=3 SV=1	Back alignment and function description

>sp\|Q63B75\|IOLC1_BACCZ 5-dehydro-2-deoxygluconokinase 1 OS=Bacillus cereus (strain ZK / E33L) GN=iolC1 PE=3 SV=1	Back alignment and function description

>sp\|Q4V1F7\|IOLC2_BACCZ 5-dehydro-2-deoxygluconokinase 2 OS=Bacillus cereus (strain ZK / E33L) GN=iolC2 PE=3 SV=1	Back alignment and function description

>sp\|Q81QB7\|IOLC_BACAN 5-dehydro-2-deoxygluconokinase OS=Bacillus anthracis GN=iolC PE=3 SV=1	Back alignment and function description

>sp\|C3LHY4\|IOLC_BACAC 5-dehydro-2-deoxygluconokinase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=iolC PE=3 SV=1	Back alignment and function description

>sp\|C3PAZ0\|IOLC_BACAA 5-dehydro-2-deoxygluconokinase OS=Bacillus anthracis (strain A0248) GN=iolC PE=3 SV=1	Back alignment and function description

>sp\|Q6HIK4\|IOLC_BACHK 5-dehydro-2-deoxygluconokinase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=iolC PE=3 SV=1	Back alignment and function description

>sp\|C1EVJ1\|IOLC_BACC3 5-dehydro-2-deoxygluconokinase OS=Bacillus cereus (strain 03BB102) GN=iolC PE=3 SV=1	Back alignment and function description

>sp\|A0REB4\|IOLC_BACAH 5-dehydro-2-deoxygluconokinase OS=Bacillus thuringiensis (strain Al Hakam) GN=iolC PE=3 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		353
224106257		384	predicted protein [Populus trichocarpa]	0.909	0.835	0.721	1e-136
255569349		358	kinase, putative [Ricinus communis] gi\|2	0.929	0.916	0.694	1e-132
225434592		381	PREDICTED: uncharacterized protein LOC10	0.966	0.895	0.660	1e-129
224059292		287	predicted protein [Populus trichocarpa]	0.810	0.996	0.734	1e-123
147865388		896	hypothetical protein VITISV_018620 [Viti	0.923	0.363	0.629	1e-120
15237741		353	pfkB-like carbohydrate kinase family pro	0.892	0.892	0.660	1e-119
297796807		350	pfkB-type carbohydrate kinase family pro	0.892	0.9	0.654	1e-118
257831427		376	UPA14 [Capsicum annuum]	0.934	0.877	0.629	1e-117
297745900		442	unnamed protein product [Vitis vinifera]	0.909	0.726	0.614	1e-115
8843793		302	unnamed protein product [Arabidopsis tha	0.793	0.927	0.7	1e-112

>gi\|224106257\|ref\|XP_002314103.1\| predicted protein [Populus trichocarpa] gi\|222850511\|gb\|EEE88058.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 233/323 (72%), Positives = 278/323 (86%), Gaps = 2/323 (0%)

Query: 10  ILIVGNYCHDVLIRNGTVLAETLGGAASFISNVLNGLSISCSLIAKVGHDFKYETSYRPI 69
           +LIVGNYCHDVLI++ TV AE+LGGAASFISNV+NG+SI C+L++KVG DFKY   Y PI
Sbjct: 18  VLIVGNYCHDVLIQDDTVKAESLGGAASFISNVVNGMSIPCNLVSKVGEDFKYPVDYTPI 77

Query: 70  IVPTSKTTVFHAYFDSISAPSGHADRVLKRVCSCEPITPSDLPDGKFDYGMAVGVGGEIL 129
           ++PTSKTTVFHAYFD     +GH DRVLKRVC+C+PI PSDLPD + ++GMAVGVGGEIL
Sbjct: 78  VIPTSKTTVFHAYFDLGILENGHQDRVLKRVCACDPIRPSDLPDVRSNFGMAVGVGGEIL 137

Query: 130 PETLEKMLEICNVVLVDIQSVIRVFDSVDGTVNPVPLKESGFYHLLPKIGFLKASSEEAL 189
           PETLE+M+EIC+ V VDIQ++IRVFDSVDGTV  V L+E+GFY +LP+IG LKASSEEA+
Sbjct: 138 PETLERMIEICDAVFVDIQALIRVFDSVDGTVKLVKLEETGFYSMLPRIGVLKASSEEAV 197

Query: 190 FMDVEEVRKLCCVVVTNGREGSEVYYRDGKVKVSPFLANQIDPTGAGDSFLGGLVTGLVQ 249
           FMDVEEVRK CCVVVT G++G +VY++DG++++SPF ANQ DPTGAGDSFLGG V GLVQ
Sbjct: 198 FMDVEEVRKWCCVVVTTGKDGCKVYWKDGELRISPFSANQEDPTGAGDSFLGGFVAGLVQ 257

Query: 250 GLAVPDAALLGNFFGSITVAQIGLPKFDSRVLQRVKDEVQRRKLSC--SERRDEEIEFMK 307
           GLAVPDAALLGN FGS+TV QIGLPKFDSR+LQRVKDEVQRRK+ C   ER D E++F+K
Sbjct: 258 GLAVPDAALLGNLFGSLTVEQIGLPKFDSRLLQRVKDEVQRRKMQCLHCERSDNELDFLK 317

Query: 308 PEGHEQFHSFLCSAKLVSACAMQ 330
           P GHEQFH+ L SAKL+  C+ Q
Sbjct: 318 PVGHEQFHASLGSAKLIPPCSSQ 340

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255569349\|ref\|XP_002525642.1\| kinase, putative [Ricinus communis] gi\|223535078\|gb\|EEF36760.1\| kinase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225434592\|ref\|XP_002278579.1\| PREDICTED: uncharacterized protein LOC100262214 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224059292\|ref\|XP_002299810.1\| predicted protein [Populus trichocarpa] gi\|222847068\|gb\|EEE84615.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|147865388\|emb\|CAN79814.1\| hypothetical protein VITISV_018620 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|15237741\|ref\|NP_200681.1\| pfkB-like carbohydrate kinase family protein [Arabidopsis thaliana] gi\|16604509\|gb\|AAL24260.1\| AT5g58730/mzn1_180 [Arabidopsis thaliana] gi\|21536720\|gb\|AAM61052.1\| unknown [Arabidopsis thaliana] gi\|21655285\|gb\|AAM65354.1\| AT5g58730/mzn1_180 [Arabidopsis thaliana] gi\|332009709\|gb\|AED97092.1\| pfkB-like carbohydrate kinase family protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297796807\|ref\|XP_002866288.1\| pfkB-type carbohydrate kinase family protein [Arabidopsis lyrata subsp. lyrata] gi\|297312123\|gb\|EFH42547.1\| pfkB-type carbohydrate kinase family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|257831427\|gb\|ACV71014.1\| UPA14 [Capsicum annuum]	Back alignment and taxonomy information

>gi\|297745900\|emb\|CBI15956.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|8843793\|dbj\|BAA97341.1\| unnamed protein product [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		353
TAIR\|locus:2178883		353	Mik "AT5G58730" [Arabidopsis t	0.889	0.889	0.631	2.8e-105

TAIR\|locus:2178883 Mik "AT5G58730" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1042 (371.9 bits), Expect = 2.8e-105, P = 2.8e-105
 Identities = 202/320 (63%), Positives = 242/320 (75%)

Query:     3 RNHSNHGILIVGNYCHDVLIRNGTVLAETLGGAASFISNVLNGLSISCSLIAKVGHDFKY 62
             R   N  +LIVGNYCHDVLI+NG+V+AETLGGAASFISNVL+  S+SC L++KVGHDF+Y
Sbjct:    16 RRIPNRRVLIVGNYCHDVLIQNGSVVAETLGGAASFISNVLDSSSVSCDLVSKVGHDFRY 75

Query:    63 ETSYRPIIVPTSKTTVFHAYFDSISAPSGHADRVLKRVCSCEPITPSDLPDGKFDYGMAV 122
             E ++ PI+ P  +TTVF AYFD      GHADRVLKRV +C+PI PSD+PD +FD+GMAV
Sbjct:    76 EVTHSPIVAPEKETTVFEAYFDLGIDGIGHADRVLKRVSACDPILPSDIPDSRFDFGMAV 135

Query:   123 GVGGEILPETLEKMLEICNVVLVDIQSVIRVFDSVDGTVNPVPLKESGFYHLLPKIGFLK 182
             GVGGEILPETLEKM+EIC+VV VDIQ++IRVFD VDG V  V LKESGFYH+L +IGFLK
Sbjct:   136 GVGGEILPETLEKMVEICDVVAVDIQALIRVFDPVDGAVKLVDLKESGFYHILHRIGFLK 195

Query:   183 ASSEEALFMDVEEVRKLCCVVVTNGREGSEVYYRDGKVKVSPFLANQIDPTGAGDSFXXX 242
             ASS+EALFMDVE+++ LCCVVVTNG +G  +Y++D ++ V PFLA Q+DPTGAGDSF   
Sbjct:   196 ASSDEALFMDVEQMKHLCCVVVTNGEKGCRIYHKDDEMTVPPFLAKQVDPTGAGDSFLGG 255

Query:   243 XXXXXXXXXXXPDAALLGNFFGSITVAQIGLPKFDSRVLQRVKDEVQRRKLSCSERRDEE 302
                        PDAALLGN FGSITV  IG PKFD  +LQ+VKDEVQRRK  C+      
Sbjct:   256 LIVGLVEGLTVPDAALLGNLFGSITVEHIGQPKFDLMMLQKVKDEVQRRKKQCN------ 309

Query:   303 IEFMKPEGHEQFHSFLCSAK 322
             I       H +FH  L  A+
Sbjct:   310 ISSSHNNDHNEFHERLSPAR 329


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.138   0.410    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      353       339   0.00094  116 3  11 22  0.38    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  594 (63 KB)
  Total size of DFA:  215 KB (2119 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  26.18u 0.08s 26.26t   Elapsed:  00:00:02
  Total cpu time:  26.18u 0.08s 26.26t   Elapsed:  00:00:05
  Start:  Sat May 11 12:35:54 2013   End:  Sat May 11 12:35:59 2013

GO:0016301 "kinase activity" evidence=ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=IMP

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.1.4	LOW CONFIDENCE prediction!
3rd Layer	2.7.1	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00024103001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (381 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00015145001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (475 aa)	•	0.415

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		353
PLN02630		335	PLN02630, PLN02630, pfkB-type carbohydrate kinase	0.0
COG0524		311	COG0524, RbsK, Sugar kinases, ribokinase family [C	2e-19
pfam00294		298	pfam00294, PfkB, pfkB family carbohydrate kinase	4e-18
cd01942		279	cd01942, ribokinase_group_A, Ribokinase-like subgr	5e-18
cd01174		292	cd01174, ribokinase, Ribokinase catalyses the phos	1e-13
cd01937		254	cd01937, ribokinase_group_D, Ribokinase-like subgr	3e-13
TIGR02152		293	TIGR02152, D_ribokin_bact, ribokinase	9e-13
cd01166		294	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (Kdg	4e-12
cd01167		295	cd01167, bac_FRK, Fructokinases (FRKs) mainly from	6e-12
cd01168		312	cd01168, adenosine_kinase, Adenosine kinase (AK) c	9e-12
cd00287		196	cd00287, ribokinase_pfkB_like, ribokinase/pfkB sup	1e-10
cd01943		328	cd01943, MAK32, MAK32 kinase	4e-09
cd01164		289	cd01164, FruK_PfkB_like, 1-phosphofructokinase (Fr	6e-09
PLN02323		330	PLN02323, PLN02323, probable fructokinase	1e-08
cd01947		265	cd01947, Guanosine_kinase_like, Guanosine kinase-l	1e-08
COG1105		310	COG1105, FruK, Fructose-1-phosphate kinase and rel	2e-08
cd01172		304	cd01172, RfaE_like, RfaE encodes a bifunctional AD	2e-08
TIGR03168		303	TIGR03168, 1-PFK, hexose kinase, 1-phosphofructoki	7e-08
cd01944		289	cd01944, YegV_kinase_like, YegV-like sugar kinase	3e-07
cd01941		288	cd01941, YeiC_kinase_like, YeiC-like sugar kinase	4e-07
PRK09434		304	PRK09434, PRK09434, aminoimidazole riboside kinase	7e-07
TIGR02198		315	TIGR02198, rfaE_dom_I, rfaE bifunctional protein,	2e-06
cd01940		264	cd01940, Fructoselysine_kinase_like, Fructoselysin	8e-06
PTZ00292		326	PTZ00292, PTZ00292, ribokinase; Provisional	2e-05
PRK11142		306	PRK11142, PRK11142, ribokinase; Provisional	2e-05
PLN02548		332	PLN02548, PLN02548, adenosine kinase	3e-05
cd01945		284	cd01945, ribokinase_group_B, Ribokinase-like subgr	7e-05
PRK09813		260	PRK09813, PRK09813, fructoselysine 6-kinase; Provi	1e-04
TIGR03828		304	TIGR03828, pfkB, 1-phosphofructokinase	3e-04
PLN02341		470	PLN02341, PLN02341, pfkB-type carbohydrate kinase	7e-04
COG2870		467	COG2870, RfaE, ADP-heptose synthase, bifunctional	8e-04
PLN02813		426	PLN02813, PLN02813, pfkB-type carbohydrate kinase	0.003

>gnl\|CDD\|178237 PLN02630, PLN02630, pfkB-type carbohydrate kinase family protein	Back alignment and domain information

 Score =  523 bits (1349), Expect = 0.0
 Identities = 219/339 (64%), Positives = 272/339 (80%), Gaps = 11/339 (3%)

Query: 3   RNHSNH-----GILIVGNYCHDVLIRNGTVLAETLGGAASFISNVLNGLSISCSLIAKVG 57
            NHS        +LIVGNYCHDVLI+NG+V AE+LGGAASFISNVL+ LS+ C L++KVG
Sbjct: 2   TNHSKRPIPQRRVLIVGNYCHDVLIQNGSVTAESLGGAASFISNVLDALSVECELVSKVG 61

Query: 58  HDFKYETSYRPIIVPTSKTTVFHAYFDSISAPSGHADRVLKRVCSCEPITPSDLPDGKFD 117
            DF Y+ S+ PI++P SKTT FHA FD     +GH DRVLKRVC+C+PI PSD+PD +++
Sbjct: 62  PDFLYQVSHPPIVIPDSKTTEFHADFDQGIDGNGHEDRVLKRVCACDPIEPSDIPDMRYE 121

Query: 118 YGMAVGVGGEILPETLEKMLEICNVVLVDIQSVIRVFDSVDGTVNPVPLKESGFYHLLPK 177
           +GMAVGV GEILPETLE+M+EIC+VV+VDIQ++IRVFD VDGTV  V L+E+GFY +LP+
Sbjct: 122 FGMAVGVAGEILPETLERMVEICDVVVVDIQALIRVFDPVDGTVKLVKLEETGFYDMLPR 181

Query: 178 IGFLKASSEEALFMDVEEVRKLCCVVVTNGREGSEVYYRDGKVKVSPFLANQIDPTGAGD 237
           IGFLKASSEEALF+DVEEVR+ CCV+VTNG++G  +Y++DG+++V PF A Q+DPTGAGD
Sbjct: 182 IGFLKASSEEALFIDVEEVRQKCCVIVTNGKKGCRIYWKDGEMRVPPFPAIQVDPTGAGD 241

Query: 238 SFLGGLVTGLVQGLAVPDAALLGNFFGSITVAQIGLPKFDSRVLQRVKDEVQRRKLSCSE 297
           SFLGG V GLVQGLAVPDAALLGN+FGS+ V Q+G+PKFD R LQRVKDEVQRRK+ C  
Sbjct: 242 SFLGGFVAGLVQGLAVPDAALLGNYFGSLAVEQVGIPKFDLRQLQRVKDEVQRRKMQC-- 299

Query: 298 RRDEEIEFMKPEGHEQFHSFLCSAKLVSACAMQECLKDF 336
               E+ F+KP GH QFH+ L +AKL+   + QE     
Sbjct: 300 ----ELSFLKPNGHNQFHASLSAAKLIPVDSQQEPKLLV 334

Length = 335

>gnl\|CDD\|223598 COG0524, RbsK, Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|215842 pfam00294, PfkB, pfkB family carbohydrate kinase	Back alignment and domain information

>gnl\|CDD\|238917 cd01942, ribokinase_group_A, Ribokinase-like subgroup A	Back alignment and domain information

>gnl\|CDD\|238579 cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	Back alignment and domain information

>gnl\|CDD\|238912 cd01937, ribokinase_group_D, Ribokinase-like subgroup D	Back alignment and domain information

>gnl\|CDD\|233751 TIGR02152, D_ribokin_bact, ribokinase	Back alignment and domain information

>gnl\|CDD\|238571 cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)	Back alignment and domain information

>gnl\|CDD\|238572 cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate	Back alignment and domain information

>gnl\|CDD\|238573 cd01168, adenosine_kinase, Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor	Back alignment and domain information

>gnl\|CDD\|238177 cd00287, ribokinase_pfkB_like, ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group	Back alignment and domain information

>gnl\|CDD\|238918 cd01943, MAK32, MAK32 kinase	Back alignment and domain information

>gnl\|CDD\|238570 cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	Back alignment and domain information

>gnl\|CDD\|215183 PLN02323, PLN02323, probable fructokinase	Back alignment and domain information

>gnl\|CDD\|238922 cd01947, Guanosine_kinase_like, Guanosine kinase-like sugar kinases	Back alignment and domain information

>gnl\|CDD\|224030 COG1105, FruK, Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|238577 cd01172, RfaE_like, RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose	Back alignment and domain information

>gnl\|CDD\|234133 TIGR03168, 1-PFK, hexose kinase, 1-phosphofructokinase family	Back alignment and domain information

>gnl\|CDD\|238919 cd01944, YegV_kinase_like, YegV-like sugar kinase	Back alignment and domain information

>gnl\|CDD\|238916 cd01941, YeiC_kinase_like, YeiC-like sugar kinase	Back alignment and domain information

>gnl\|CDD\|236514 PRK09434, PRK09434, aminoimidazole riboside kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|233776 TIGR02198, rfaE_dom_I, rfaE bifunctional protein, domain I	Back alignment and domain information

>gnl\|CDD\|238915 cd01940, Fructoselysine_kinase_like, Fructoselysine kinase-like	Back alignment and domain information

>gnl\|CDD\|185541 PTZ00292, PTZ00292, ribokinase; Provisional	Back alignment and domain information

>gnl\|CDD\|236858 PRK11142, PRK11142, ribokinase; Provisional	Back alignment and domain information

>gnl\|CDD\|178163 PLN02548, PLN02548, adenosine kinase	Back alignment and domain information

>gnl\|CDD\|238920 cd01945, ribokinase_group_B, Ribokinase-like subgroup B	Back alignment and domain information

>gnl\|CDD\|182090 PRK09813, PRK09813, fructoselysine 6-kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|234367 TIGR03828, pfkB, 1-phosphofructokinase	Back alignment and domain information

>gnl\|CDD\|215195 PLN02341, PLN02341, pfkB-type carbohydrate kinase family protein	Back alignment and domain information

>gnl\|CDD\|225425 COG2870, RfaE, ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|215434 PLN02813, PLN02813, pfkB-type carbohydrate kinase family protein	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		353
PLN02630		335	pfkB-type carbohydrate kinase family protein	100.0
PRK11142		306	ribokinase; Provisional	100.0
PTZ00292		326	ribokinase; Provisional	100.0
PLN02543		496	pfkB-type carbohydrate kinase family protein	100.0
KOG2855		330	consensus Ribokinase [Carbohydrate transport and m	100.0
PLN02323		330	probable fructokinase	100.0
PLN02813		426	pfkB-type carbohydrate kinase family protein	100.0
cd01168		312	adenosine_kinase Adenosine kinase (AK) catalyzes t	100.0
PLN02967		581	kinase	100.0
PLN02379		367	pfkB-type carbohydrate kinase family protein	100.0
cd01942		279	ribokinase_group_A Ribokinase-like subgroup A. Fou	100.0
cd01174		292	ribokinase Ribokinase catalyses the phosphorylatio	100.0
PTZ00247		345	adenosine kinase; Provisional	100.0
PLN02341		470	pfkB-type carbohydrate kinase family protein	100.0
cd01944		289	YegV_kinase_like YegV-like sugar kinase. Found onl	100.0
cd01940		264	Fructoselysine_kinase_like Fructoselysine kinase-l	100.0
PRK09434		304	aminoimidazole riboside kinase; Provisional	100.0
cd01167		295	bac_FRK Fructokinases (FRKs) mainly from bacteria	100.0
COG0524		311	RbsK Sugar kinases, ribokinase family [Carbohydrat	100.0
cd01947		265	Guanosine_kinase_like Guanosine kinase-like sugar	100.0
PRK09850		313	pseudouridine kinase; Provisional	100.0
cd01943		328	MAK32 MAK32 kinase. MAK32 is a protein found prima	100.0
PRK15074		434	inosine/guanosine kinase; Provisional	100.0
cd01166		294	KdgK 2-keto-3-deoxygluconate kinase (KdgK) phospho	100.0
PRK09954		362	putative kinase; Provisional	100.0
cd01945		284	ribokinase_group_B Ribokinase-like subgroup B. Fou	100.0
cd01172		304	RfaE_like RfaE encodes a bifunctional ADP-heptose	100.0
cd01939		290	Ketohexokinase Ketohexokinase (fructokinase, KHK)	100.0
TIGR02198		315	rfaE_dom_I rfaE bifunctional protein, domain I. Rf	100.0
PF00294		301	PfkB: pfkB family carbohydrate kinase; InterPro: I	100.0
PRK09813		260	fructoselysine 6-kinase; Provisional	100.0
PRK13508		309	tagatose-6-phosphate kinase; Provisional	100.0
TIGR02152		293	D_ribokin_bact ribokinase. This model describes ri	100.0
cd01937		254	ribokinase_group_D Ribokinase-like subgroup D. Fou	100.0
PRK09513		312	fruK 1-phosphofructokinase; Provisional	100.0
TIGR01231		309	lacC tagatose-6-phosphate kinase. This enzyme is p	100.0
PRK10294		309	6-phosphofructokinase 2; Provisional	100.0
TIGR03828		304	pfkB 1-phosphofructokinase. This enzyme acts in co	100.0
cd01941		288	YeiC_kinase_like YeiC-like sugar kinase. Found in	100.0
PLN02548		332	adenosine kinase	99.98
TIGR03168		303	1-PFK hexose kinase, 1-phosphofructokinase family.	99.97
PRK11316		473	bifunctional heptose 7-phosphate kinase/heptose 1-	99.97
cd01164		289	FruK_PfkB_like 1-phosphofructokinase (FruK), minor	99.97
cd01946		277	ribokinase_group_C Ribokinase-like subgroup C. Fou	99.97
COG1105		310	FruK Fructose-1-phosphate kinase and related fruct	99.96
KOG2854		343	consensus Possible pfkB family carbohydrate kinase	99.95
KOG2947		308	consensus Carbohydrate kinase [Carbohydrate transp	99.94
COG2870		467	RfaE ADP-heptose synthase, bifunctional sugar kina	99.93
cd00287		196	ribokinase_pfkB_like ribokinase/pfkB superfamily:	99.9
TIGR00097		254	HMP-P_kinase phosphomethylpyrimidine kinase. This	99.54
PRK12412		268	pyridoxal kinase; Reviewed	99.53
cd01173		254	pyridoxal_pyridoxamine_kinase Pyridoxal kinase pla	99.53
PRK05756		286	pyridoxamine kinase; Validated	99.53
PRK12413		253	phosphomethylpyrimidine kinase; Provisional	99.51
cd01169		242	HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrim	99.5
TIGR00687		286	pyridox_kin pyridoxal kinase. ThiD and related pro	99.49
PRK06427		266	bifunctional hydroxy-methylpyrimidine kinase/ hydr	99.49
PRK08573		448	phosphomethylpyrimidine kinase; Provisional	99.48
PRK07105		284	pyridoxamine kinase; Validated	99.48
PRK08176		281	pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpy	99.38
PRK12616		270	pyridoxal kinase; Reviewed	99.37
KOG3009		614	consensus Predicted carbohydrate kinase, contains	99.27
PTZ00347		504	phosphomethylpyrimidine kinase; Provisional	99.19
PLN02898		502	HMP-P kinase/thiamin-monophosphate pyrophosphoryla	99.17
PTZ00344		296	pyridoxal kinase; Provisional	99.07
PRK14713		530	multifunctional hydroxymethylpyrimidine phosphokin	99.07
cd01171		254	YXKO-related B.subtilis YXKO protein of unknown fu	99.06
PRK09517		755	multifunctional thiamine-phosphate pyrophosphoryla	99.04
COG0351		263	ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidi	98.81
PF08543		246	Phos_pyr_kin: Phosphomethylpyrimidine kinase; Inte	98.79
TIGR00196		272	yjeF_cterm yjeF C-terminal region, hydroxyethylthi	98.76
PLN02978		308	pyridoxal kinase	98.68
cd01170		242	THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (T	98.58
COG2240		281	PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coe	98.24
PTZ00493		321	phosphomethylpyrimidine kinase; Provisional	98.15
PRK09355		263	hydroxyethylthiazole kinase; Validated	97.79
TIGR00694		249	thiM hydroxyethylthiazole kinase. This model repre	97.51
KOG2598		523	consensus Phosphomethylpyrimidine kinase [Coenzyme	97.04
KOG2599		308	consensus Pyridoxal/pyridoxine/pyridoxamine kinase	95.88
PF01256		242	Carb_kinase: Carbohydrate kinase; InterPro: IPR000	94.36
PRK10565		508	putative carbohydrate kinase; Provisional	94.3
COG2145		265	ThiM Hydroxyethylthiazole kinase, sugar kinase fam	90.97
COG0063		284	Predicted sugar kinase [Carbohydrate transport and	88.06
PF02110		246	HK: Hydroxyethylthiazole kinase family; InterPro:	86.44

>PLN02630 pfkB-type carbohydrate kinase family protein	Back alignment and domain information

Probab=100.00  E-value=7.5e-56  Score=416.44  Aligned_cols=329  Identities=66%  Similarity=1.125  Sum_probs=288.8

Q ss_pred             CCCCcccEEEEccceeeeeeccCcccccccCChHHHHHHHHHhCCCCeEEEEEecCCCCCCcccceeecCCCCCeEEEEE
Q 038564            3 RNHSNHGILIVGNYCHDVLIRNGTVLAETLGGAASFISNVLNGLSISCSLIAKVGHDFKYETSYRPIIVPTSKTTVFHAY   82 (353)
Q Consensus         3 ~~~~~~~ilviG~~~iD~~~~~~~~~~~~~GG~a~N~A~~la~LG~~v~~ig~vG~D~~g~vd~~~v~~~~~~T~~~~~~   82 (353)
                      ...+.++|+++|++++|++...++.....+||+++|+|.+++|||.++.++|++|+|+.++++...+..++.+|+.++++
T Consensus         7 ~~~~~~~vlvvG~~~~D~i~~~g~~~~~~~GG~a~N~A~alarLG~~~~lis~VG~D~~~~v~~~~~~~~~~~T~~~~~~   86 (335)
T PLN02630          7 RPIPQRRVLIVGNYCHDVLIQNGSVTAESLGGAASFISNVLDALSVECELVSKVGPDFLYQVSHPPIVIPDSKTTEFHAD   86 (335)
T ss_pred             CCCCCCCEEEEeeeeeeEEEeCCcEEEEecCcHHHHHHHHHHHcCCceEEEEEecCCccccccccceecCCCCceEEEEE
Confidence            35567899999999999998865445589999999999999999999999999999998778776555577789998887


Q ss_pred             ecccCCCCCCccEEEeecCCCCCCCCCCCCCccccccceeeecCCCcHHHHHHHHHHhhhhhcccccceEEEecCCCccC
Q 038564           83 FDSISAPSGHADRVLKRVCSCEPITPSDLPDGKFDYGMAVGVGGEILPETLEKMLEICNVVLVDIQSVIRVFDSVDGTVN  162 (353)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~~D~~g~~~~~d~~~~~~~  162 (353)
                      ++.+..+++++++++...+++..+++++++...+..+..+++.+++++++...+++.++.+++|++++.+.|||.+....
T Consensus        87 ~~~g~~~~~~e~~i~~~~ga~~~l~~~di~~~~~~~~~~~~l~~ei~~e~~~~~~~~a~~v~~D~~g~~~~~Dp~~~~~~  166 (335)
T PLN02630         87 FDQGIDGNGHEDRVLKRVCACDPIEPSDIPDMRYEFGMAVGVAGEILPETLERMVEICDVVVVDIQALIRVFDPVDGTVK  166 (335)
T ss_pred             EcCCcccCCCCeEEEEeccccCCCChHHCCHHHhcccceeeecCCCcHHHHHHHHHHhhhheeccCceEEecCCcccccc
Confidence            76421122457888999999999999999775566677788888888999999999999999999999999999764233


Q ss_pred             CCCCChhhhhhcCCcccEeecCHHHHccCCHHHHhccCeEEEeeCCCceEEEEcCceEEEcCccccccCCCCCchHHHHH
Q 038564          163 PVPLKESGFYHLLPKIGFLKASSEEALFMDVEEVRKLCCVVVTNGREGSEVYYRDGKVKVSPFLANQIDPTGAGDSFLGG  242 (353)
Q Consensus       163 ~~~~~~~~~~~~l~~~dvl~~n~~Ea~~l~~~~~~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~~vDttGAGDaF~ag  242 (353)
                      ++......+.++|+++|++++|++|+..++.+++.+...||||+|++|++++++++.+++|+++++++|||||||+|+||
T Consensus       167 ~~~~~~~~~~~~L~~iDil~~ne~Ea~~l~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~~vDttGAGDaF~ag  246 (335)
T PLN02630        167 LVKLEETGFYDMLPRIGFLKASSEEALFIDVEEVRQKCCVIVTNGKKGCRIYWKDGEMRVPPFPAIQVDPTGAGDSFLGG  246 (335)
T ss_pred             cchhhHHHHHHHHHhCCEEEecHHHHhhcCHHHHccCCEEEEEECCCceEEEECCeeEEeCCCCCCCCCCCChHHHHHHH
Confidence            33333334668899999999999999998877776667899999999999999888899999999999999999999999


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhHhhheeecccccccccccccCcchhHHHHHHhhhhh
Q 038564          243 LVTGLVQGLAVPDAALLGNFFGSITVAQIGLPKFDSRVLQRVKDEVQRRKLSCSERRDEEIEFMKPEGHEQFHSFLCSAK  322 (353)
Q Consensus       243 fl~~l~~g~~~~~Al~~A~a~Aa~~v~~~G~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (353)
                      |++++++|+++++|+++|+++|++++++.|.+.++.++++++++++++++++|      ++.|.||++|+|||++|.++|
T Consensus       247 fi~~l~~g~~~~~a~~~A~a~aa~~v~~~G~~~~~~~~l~~~~~~i~i~~l~~------~~~~~~~~~~~~~~~~~~~~~  320 (335)
T PLN02630        247 FVAGLVQGLAVPDAALLGNYFGSLAVEQVGIPKFDLRQLQRVKDEVQRRKMQC------ELSFLKPNGHNQFHASLSAAK  320 (335)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHhhcEEEEEeec------ceeecccccHHHHHHhhhhhc
Confidence            99999999999999999999999999999999999999999999999999998      899999999999999999999


Q ss_pred             ccchhhHhhhcCCCC
Q 038564          323 LVSACAMQECLKDFP  337 (353)
Q Consensus       323 ~~~~~~~~~~~~~~~  337 (353)
                      +.++++.|+|.|.+.
T Consensus       321 ~~~~~~~~~~~~~~~  335 (335)
T PLN02630        321 LIPVDSQQEPKLLVS  335 (335)
T ss_pred             cCChhhhhccccccC
Confidence            999999999999863

>PRK11142 ribokinase; Provisional	Back alignment and domain information

>PTZ00292 ribokinase; Provisional	Back alignment and domain information

>PLN02543 pfkB-type carbohydrate kinase family protein	Back alignment and domain information

>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PLN02323 probable fructokinase	Back alignment and domain information

>PLN02813 pfkB-type carbohydrate kinase family protein	Back alignment and domain information

>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor	Back alignment and domain information

>PLN02967 kinase	Back alignment and domain information

>PLN02379 pfkB-type carbohydrate kinase family protein	Back alignment and domain information

>cd01942 ribokinase_group_A Ribokinase-like subgroup A	Back alignment and domain information

>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	Back alignment and domain information

>PTZ00247 adenosine kinase; Provisional	Back alignment and domain information

>PLN02341 pfkB-type carbohydrate kinase family protein	Back alignment and domain information

>cd01944 YegV_kinase_like YegV-like sugar kinase	Back alignment and domain information

>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like	Back alignment and domain information

>PRK09434 aminoimidazole riboside kinase; Provisional	Back alignment and domain information

>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate	Back alignment and domain information

>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases	Back alignment and domain information

>PRK09850 pseudouridine kinase; Provisional	Back alignment and domain information

>cd01943 MAK32 MAK32 kinase	Back alignment and domain information

>PRK15074 inosine/guanosine kinase; Provisional	Back alignment and domain information

>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)	Back alignment and domain information

>PRK09954 putative kinase; Provisional	Back alignment and domain information

>cd01945 ribokinase_group_B Ribokinase-like subgroup B	Back alignment and domain information

>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose	Back alignment and domain information

>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose	Back alignment and domain information

>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I	Back alignment and domain information

>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases	Back alignment and domain information

>PRK09813 fructoselysine 6-kinase; Provisional	Back alignment and domain information

>PRK13508 tagatose-6-phosphate kinase; Provisional	Back alignment and domain information

>TIGR02152 D_ribokin_bact ribokinase	Back alignment and domain information

>cd01937 ribokinase_group_D Ribokinase-like subgroup D	Back alignment and domain information

>PRK09513 fruK 1-phosphofructokinase; Provisional	Back alignment and domain information

>TIGR01231 lacC tagatose-6-phosphate kinase	Back alignment and domain information

>PRK10294 6-phosphofructokinase 2; Provisional	Back alignment and domain information

>TIGR03828 pfkB 1-phosphofructokinase	Back alignment and domain information

>cd01941 YeiC_kinase_like YeiC-like sugar kinase	Back alignment and domain information

>PLN02548 adenosine kinase	Back alignment and domain information

>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family	Back alignment and domain information

>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional	Back alignment and domain information

>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	Back alignment and domain information

>cd01946 ribokinase_group_C Ribokinase-like subgroup C	Back alignment and domain information

>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group	Back alignment and domain information

>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase	Back alignment and domain information

>PRK12412 pyridoxal kinase; Reviewed	Back alignment and domain information

>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP	Back alignment and domain information

>PRK05756 pyridoxamine kinase; Validated	Back alignment and domain information

>PRK12413 phosphomethylpyrimidine kinase; Provisional	Back alignment and domain information

>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1	Back alignment and domain information

>TIGR00687 pyridox_kin pyridoxal kinase	Back alignment and domain information

>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	Back alignment and domain information

>PRK08573 phosphomethylpyrimidine kinase; Provisional	Back alignment and domain information

>PRK07105 pyridoxamine kinase; Validated	Back alignment and domain information

>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed	Back alignment and domain information

>PRK12616 pyridoxal kinase; Reviewed	Back alignment and domain information

>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]	Back alignment and domain information

>PTZ00347 phosphomethylpyrimidine kinase; Provisional	Back alignment and domain information

>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase	Back alignment and domain information

>PTZ00344 pyridoxal kinase; Provisional	Back alignment and domain information

>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional	Back alignment and domain information

>cd01171 YXKO-related B	Back alignment and domain information

>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional	Back alignment and domain information

>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]	Back alignment and domain information

>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2	Back alignment and domain information

>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related	Back alignment and domain information

>PLN02978 pyridoxal kinase	Back alignment and domain information

>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz	Back alignment and domain information

>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]	Back alignment and domain information

>PTZ00493 phosphomethylpyrimidine kinase; Provisional	Back alignment and domain information

>PRK09355 hydroxyethylthiazole kinase; Validated	Back alignment and domain information

>TIGR00694 thiM hydroxyethylthiazole kinase	Back alignment and domain information

>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]	Back alignment and domain information

>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]	Back alignment and domain information

>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase	Back alignment and domain information

>PRK10565 putative carbohydrate kinase; Provisional	Back alignment and domain information

>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]	Back alignment and domain information

>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		353
2c49_A		302	Crystal Structure Of Methanocaldococcus Jannaschii		2e-04
1v19_A		309	2-Keto-3-Deoxygluconate Kinase From Thermus Thermop		4e-04

>pdb|2C49|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii Nucleoside Kinase - An Archaeal Member Of The Ribokinase Family Length = 302

Back alignment and structure

Iteration: 1

Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 6/95 (6%) Query: 196 VRKLCCVVVTNGREGSEVYYRDGKVKVSPFLANQ-IDPTGAGDSFXXXXXXXXXXXXXXP 254 + ++ ++VT G +GS +Y +D K+++ A + IDPTGAGDS+ Sbjct: 205 LERVDALIVTKGSKGSVIYTKDKKIEIPCIKAGKVIDPTGAGDSYRAGFLSAYVKGYDLE 264 Query: 255 DAALLGNFFGSITVA----QIGLPKFDSRVLQRVK 285 L+G S V Q LP +D +V++R++ Sbjct: 265 KCGLIGAATASFVVEAKGCQTNLPTWD-KVVERLE 298

PyMOL of 2c49

>pdb|1V19|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus Length = 309

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		353
1vk4_A		298	PFKB carbohydrate kinase TM0415; structural genomi	3e-45
3kd6_A		313	Carbohydrate kinase, PFKB family; nucleoside kinas	1e-21
2hlz_A		312	Ketohexokinase; non-protein kinase, creatine kinas	4e-21
3h49_A		325	Ribokinase; transferase,PFKB family,sugar kinase Y	4e-20
2c4e_A		302	Sugar kinase MJ0406; transferase, nucleoside kinas	6e-20
3iq0_A		330	Putative ribokinase II; transferase,kinase,SAD,rib	1e-19
3pl2_A		319	Sugar kinase, ribokinase family; PFKB PFAM motif,	3e-19
2qhp_A		296	Fructokinase; NP_810670.1, PFKB family carbohydrat	3e-19
3hj6_A		327	Fructokinase, FRK; fructose, transferase, carbohyd	6e-19
2dcn_A		311	Hypothetical fructokinase; 2-keto-3-deoxygluconate	1e-18
2v78_A		313	Fructokinase; transferase, PFKB family carbohydrat	2e-18
4du5_A		336	PFKB; structural genomics, PSI-biology, NEW YORK s	4e-18
1tyy_A		339	Putative sugar kinase; ribokinase fold, alpha/beta	1e-17
1v1a_A		309	2-keto-3-deoxygluconate kinase; ATP, structural ge	1e-17
2qcv_A		332	Putative 5-dehydro-2-deoxygluconokinase; structura	2e-17
3b1n_A		326	Ribokinase, putative; rossmann fold, ATP binding,	3e-17
3ewm_A		313	Uncharacterized sugar kinase PH1459; carbohydrate	3e-17
4e69_A		328	2-dehydro-3-deoxygluconokinase; putative sugar kin	4e-17
2pkf_A		334	Adenosine kinase; transferase, S genomics, TB stru	5e-17
3kzh_A		328	Probable sugar kinase; NYSGXRC, PSI-II, protein st	9e-17
3lhx_A		319	Ketodeoxygluconokinase; structural genomics, PSI-2	6e-16
2nwh_A		317	AGR_C_3442P, carbohydrate kinase; structural genom	1e-15
3ljs_A		338	Fructokinase; fructokianse, PSI2, NYSGXRC, structu	6e-15
3bf5_A		306	Ribokinase related protein; 10640157, putative rib	1e-14
1vm7_A		311	Ribokinase; TM0960, structural genomics, JCSG, pro	4e-14
2rbc_A		343	Sugar kinase, AGR_C_4560P; ribokinase family, ATP-	1e-13
1rkd_A		309	Ribokinase; carbohydrate kinase, ribose, nucleotid	1e-13
3ry7_A		304	Ribokinase; transferase; 2.15A {Staphylococcus aur	2e-12
3ie7_A		320	LIN2199 protein; phosphofructokinases, transferase	4e-12
3go6_A		310	Ribokinase RBSK; phosphofructokinase, carbohydrate	7e-12
4e3a_A		352	Sugar kinase protein; structural genomics, protein	7e-12
2fv7_A		331	Ribokinase; structural genomics, structural genomi	2e-11
2jg1_A		330	Tagatose-6-phosphate kinase; phosphoryl transfer,	6e-11
2f02_A		323	Tagatose-6-phosphate kinase; LACC, structural geno	6e-11
2jg5_A		306	Fructose 1-phosphate kinase; 1-phosphofructokinase	9e-11
3cqd_A		309	6-phosphofructokinase isozyme 2; phosphofructokina	1e-10
2abq_A		306	Fructose 1-phosphate kinase; dimer, structural gen	2e-10
2afb_A		351	2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-	2e-10
3ktn_A		346	Carbohydrate kinase, PFKB family; PFKB family,ribo	3e-10
3otx_A		347	Adenosine kinase, putative; AP5A, transferase-tran	3e-10
1bx4_A		345	Protein (adenosine kinase); human adenosine kinase	9e-10
3loo_A		365	Anopheles gambiae adenosine kinase; AP4A, P4-DI(ad	3e-09
2abs_A		383	Adenosine kinase, AK; ribokinase fold, alpha/beta,	6e-09
3ikh_A		299	Carbohydrate kinase; transferase,kinase,SAD,ribose	7e-09
2ajr_A		331	Sugar kinase, PFKB family; TM0828, possible 1-phos	4e-08

>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein structure initiative, joint center for structural G transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1 Length = 298	Back alignment and structure

 Score =  155 bits (394), Expect = 3e-45
 Identities = 47/285 (16%), Positives = 99/285 (34%), Gaps = 28/285 (9%)

Query: 5   HSNHGILIVGNYCHDVLIRNGTVLAETLGGAASFISNVLNGLSISCSLIAKVGHDFKYET 64
           H +H I  +G+   DV + +G       GG     +   + L +   +I K   +   + 
Sbjct: 9   HHHHMITFIGHVSKDVNVVDGKR-EIAYGGGVVMGAITSSLLGVKTKVITKCTREDVSKF 67

Query: 65  SY------RPIIVPTSKTTVFHAYFDSISAPSGHADRVLKRVCSCEPITPSDLPDGKFDY 118
           S+        + + + +TT     + S         R    + + +P T SDL   + + 
Sbjct: 68  SFLRDNGVEVVFLKSPRTTSIENRYGS-----DPDTRESFLISAADPFTESDLAFIEGEA 122

Query: 119 GMAVGV-GGEILPETLEKMLEICNVVLVDIQSVIRVFDSVDGTVNPVPLKESGFYHLLPK 177
                +  GE   + +  +      +  D Q  +RV ++         +KE      L  
Sbjct: 123 VHINPLWYGEFPEDLIPVLRRKVMFLSADAQGFVRVPENEKLVYRDWEMKEK----YLKY 178

Query: 178 IGFLKASSEEALFM----DVEEVRKLCC-----VVVTNGREGSEVYYRDGKVKVSPFLAN 228
           +   K  S EA  +    D+ E  ++       +++     G  + +     + S    +
Sbjct: 179 LDLFKVDSREAETLTGTNDLRESCRIIRSFGAKIILATHASGV-IVFDGNFYEASFRSWS 237

Query: 229 QIDPTGAGDSFLGGLVTG-LVQGLAVPDAALLGNFFGSITVAQIG 272
               TG GD+     + G + + +++  A        S+ +   G
Sbjct: 238 LEGRTGRGDTCTAAFLVGFVFKKMSIEKATKFAAAVTSVKMRHPG 282

PyMOL of 1vk4

>3kd6_A Carbohydrate kinase, PFKB family; nucleoside kinase, AMP, PSI-II, NYSGXRC, struc genomics, protein structure initiative; HET: AMP; 1.88A {Chlorobaculum tepidum} Length = 313	Back alignment and structure

>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase, isoform A, structural genomics, structural genomics consortium, SGC transferase; 1.85A {Homo sapiens} PDB: 2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A* 3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A Length = 312	Back alignment and structure

>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH, NYSGXRC,11206A,PSI2,, structural genomics, protein structure initiative; 1.80A {Escherichia coli k-12} PDB: 3in1_A* Length = 325	Back alignment and structure

>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase, hyperthermophIle, ribokinase ribokinase fold; 1.70A {Methanococcus jannaschii} PDB: 2c49_A Length = 302	Back alignment and structure

>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose metabolic process, PFKB family,11206G, PSI-II, NYSGXRC, structural genomics; HET: ATP; 1.79A {Escherichia coli O6} PDB: 3k9e_A Length = 330	Back alignment and structure

>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol phosphate metabolism, ribokinase-L structural genomics; HET: MSE CIT; 1.89A {Corynebacterium glutamicum} Length = 319	Back alignment and structure

>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Length = 296	Back alignment and structure

>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A {Halothermothrix orenii} Length = 327	Back alignment and structure

>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto- gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus tokodaii} SCOP: c.72.1.1 PDB: 1wye_A* Length = 311	Back alignment and structure

>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2- keto-3-deoxygluconate kinase; 2.00A {Sulfolobus solfataricus} PDB: 2var_A* Length = 313	Back alignment and structure

>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.70A {Polaromonas SP} Length = 336	Back alignment and structure

>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase; 2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB: 1tz3_A* 1tz6_A* Length = 339	Back alignment and structure

>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics, transferase, riken structural genomics/proteomics initiative, RSGI; HET: KDG ADP; 2.1A {Thermus thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A Length = 309	Back alignment and structure

>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125} Length = 332	Back alignment and structure

>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding, nucleoside B transferase; HET: MZR ADP; 1.55A {Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A* 3b1r_A* Length = 326	Back alignment and structure

>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB family, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 1.90A {Pyrococcus horikoshii} PDB: 3ih0_A* 3gbu_A* Length = 313	Back alignment and structure

>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A* Length = 328	Back alignment and structure

>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics consortium, TBSGC; 1.50A {Mycobacterium tuberculosis} PDB: 2pkk_A* 2pkm_A* 2pkn_A* Length = 334	Back alignment and structure

>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure initiative, modified lysin, structural genomics; HET: BGC; 2.45A {Clostridium perfringens} Length = 328	Back alignment and structure

>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.87A {Shigella flexneri} Length = 319	Back alignment and structure

>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199, PSI-2, PR structure initiative 2; 1.86A {Agrobacterium tumefaciens str} Length = 317	Back alignment and structure

>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.97A {Xylella fastidiosa TEMECULA1} PDB: 3lki_A* Length = 338	Back alignment and structure

>3bf5_A Ribokinase related protein; 10640157, putative ribokinase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728} Length = 306	Back alignment and structure

>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc initiative, PSI, joint center for structural genomics, TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1 Length = 311	Back alignment and structure

>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site, structura genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str} Length = 343	Back alignment and structure

>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding, transferase; HET: RIB ADP; 1.84A {Escherichia coli} SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A* Length = 309	Back alignment and structure

>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus} Length = 304	Back alignment and structure

>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION, PSI-II, NYSGXRC, kinase, structural genomics, structure initiative; HET: ATP; 1.60A {Listeria innocua} PDB: 3hic_A* 3jul_A* 3q1y_A Length = 320	Back alignment and structure

>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase, transferase; HET: RIB ADP; 1.98A {Mycobacterium tuberculosis} PDB: 3go7_A* Length = 310	Back alignment and structure

>4e3a_A Sugar kinase protein; structural genomics, protein structure initiative, nysgrc, S kinase, PSI-biology; HET: ADN; 1.63A {Rhizobium etli} PDB: 3ubo_A* Length = 352	Back alignment and structure

>2fv7_A Ribokinase; structural genomics, structural genomics consort transferase; HET: ADP; 2.10A {Homo sapiens} SCOP: c.72.1.1 Length = 331	Back alignment and structure

>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational changes, transferase, lactose metabolism; HET: MSE ANP TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A* Length = 330	Back alignment and structure

>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI, protein structure initiative YORK SGX research center for structural genomics; HET: ATP; 1.90A {Enterococcus faecalis} SCOP: c.72.1.1 PDB: 2awd_A* Length = 323	Back alignment and structure

>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase; 2.3A {Staphylococcus aureus} Length = 306	Back alignment and structure

>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2, glycolysis, transferase; HET: ATP; 1.98A {Escherichia coli} PDB: 3n1c_A* Length = 309	Back alignment and structure

>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI, protein structure initiative; 2.10A {Bacillus halodurans} SCOP: c.72.1.1 Length = 306	Back alignment and structure

>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3- deoxygluconokinase, PFKB family carbohy kinase, structural genomics; 2.05A {Thermotoga maritima} SCOP: c.72.1.1 Length = 351	Back alignment and structure

>3ktn_A Carbohydrate kinase, PFKB family; PFKB family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II, NYSGXRC,, structural genomics; 2.26A {Enterococcus faecalis} Length = 346	Back alignment and structure

>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase inhibitor CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB: 2xtb_A* Length = 347	Back alignment and structure

>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase; HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB: 2i6a_A* 2i6b_A* Length = 345	Back alignment and structure

>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles gambiae} Length = 365	Back alignment and structure

>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate conformation, signaling protein,transferase; HET: ACP; 1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A* 2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A* 1lik_A* Length = 383	Back alignment and structure

>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose metabolic process,ATP ribokinase, PFKB family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A {Klebsiella pneumoniae subsp} PDB: 3i3y_A* Length = 299	Back alignment and structure

>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase (EC 2.7.1.56), struct genomics, joint center for structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga maritima} SCOP: c.72.1.1 Length = 331	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		353
3go6_A		310	Ribokinase RBSK; phosphofructokinase, carbohydrate	100.0
3iq0_A		330	Putative ribokinase II; transferase,kinase,SAD,rib	100.0
3ikh_A		299	Carbohydrate kinase; transferase,kinase,SAD,ribose	100.0
3ktn_A		346	Carbohydrate kinase, PFKB family; PFKB family,ribo	100.0
2c4e_A		302	Sugar kinase MJ0406; transferase, nucleoside kinas	100.0
2rbc_A		343	Sugar kinase, AGR_C_4560P; ribokinase family, ATP-	100.0
3pl2_A		319	Sugar kinase, ribokinase family; PFKB PFAM motif,	100.0
3ljs_A		338	Fructokinase; fructokianse, PSI2, NYSGXRC, structu	100.0
3ry7_A		304	Ribokinase; transferase; 2.15A {Staphylococcus aur	100.0
3hj6_A		327	Fructokinase, FRK; fructose, transferase, carbohyd	100.0
3h49_A		325	Ribokinase; transferase,PFKB family,sugar kinase Y	100.0
3ewm_A		313	Uncharacterized sugar kinase PH1459; carbohydrate	100.0
2v78_A		313	Fructokinase; transferase, PFKB family carbohydrat	100.0
3b1n_A		326	Ribokinase, putative; rossmann fold, ATP binding,	100.0
1rkd_A		309	Ribokinase; carbohydrate kinase, ribose, nucleotid	100.0
4du5_A		336	PFKB; structural genomics, PSI-biology, NEW YORK s	100.0
2dcn_A		311	Hypothetical fructokinase; 2-keto-3-deoxygluconate	100.0
3kzh_A		328	Probable sugar kinase; NYSGXRC, PSI-II, protein st	100.0
1v1a_A		309	2-keto-3-deoxygluconate kinase; ATP, structural ge	100.0
4gm6_A		351	PFKB family carbohydrate kinase; enzyme function i	100.0
2nwh_A		317	AGR_C_3442P, carbohydrate kinase; structural genom	100.0
4e3a_A		352	Sugar kinase protein; structural genomics, protein	100.0
3ie7_A		320	LIN2199 protein; phosphofructokinases, transferase	100.0
1tyy_A		339	Putative sugar kinase; ribokinase fold, alpha/beta	100.0
1vm7_A		311	Ribokinase; TM0960, structural genomics, JCSG, pro	100.0
2qcv_A		332	Putative 5-dehydro-2-deoxygluconokinase; structura	100.0
3vas_A		370	Putative adenosine kinase; ribokinase, enzyme, tra	100.0
2pkf_A		334	Adenosine kinase; transferase, S genomics, TB stru	100.0
3otx_A		347	Adenosine kinase, putative; AP5A, transferase-tran	100.0
3loo_A		365	Anopheles gambiae adenosine kinase; AP4A, P4-DI(ad	100.0
4e69_A		328	2-dehydro-3-deoxygluconokinase; putative sugar kin	100.0
3kd6_A		313	Carbohydrate kinase, PFKB family; nucleoside kinas	100.0
2fv7_A		331	Ribokinase; structural genomics, structural genomi	100.0
2jg1_A		330	Tagatose-6-phosphate kinase; phosphoryl transfer,	100.0
3lhx_A		319	Ketodeoxygluconokinase; structural genomics, PSI-2	100.0
2hlz_A		312	Ketohexokinase; non-protein kinase, creatine kinas	100.0
2f02_A		323	Tagatose-6-phosphate kinase; LACC, structural geno	100.0
1bx4_A		345	Protein (adenosine kinase); human adenosine kinase	100.0
3bf5_A		306	Ribokinase related protein; 10640157, putative rib	100.0
3umo_A		309	6-phosphofructokinase isozyme 2; glycolysis, trans	100.0
2ajr_A		331	Sugar kinase, PFKB family; TM0828, possible 1-phos	100.0
2qhp_A		296	Fructokinase; NP_810670.1, PFKB family carbohydrat	100.0
3cqd_A		309	6-phosphofructokinase isozyme 2; phosphofructokina	100.0
3uq6_A		372	Adenosine kinase, putative; ribokinase, transferas	100.0
2afb_A		351	2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-	100.0
4e84_A		352	D-beta-D-heptose 7-phosphate kinase; LPS-heptose b	100.0
2jg5_A		306	Fructose 1-phosphate kinase; 1-phosphofructokinase	100.0
2abs_A		383	Adenosine kinase, AK; ribokinase fold, alpha/beta,	100.0
2abq_A		306	Fructose 1-phosphate kinase; dimer, structural gen	100.0
1vk4_A		298	PFKB carbohydrate kinase TM0415; structural genomi	99.97
1jxh_A		288	Phosphomethylpyrimidine kinase; THID, ribokinase f	99.71
1ub0_A		258	THID, phosphomethylpyrimidine kinase; thiamin bios	99.7
2ddm_A		283	Pyridoxine kinase; pyridoxal kinase, ribokinase, p	99.68
2i5b_A		271	Phosphomethylpyrimidine kinase; ADP complex, PDXK,	99.67
2yxt_A		312	Pyridoxal kinase; beta sheet with alpha helix, met	99.67
3h74_A		282	Pyridoxal kinase; PSI-II, structural genomics, pro	99.57
3mbh_A		291	Putative phosphomethylpyrimidine kinase; structura	99.56
3pzs_A		289	PM kinase, pyridoxamine kinase; structural genomic	99.52
3zs7_A		300	Pyridoxal kinase; transferase, sleeping sickness;	99.41
1ekq_A		272	Hydroxyethylthiazole kinase; alpha-beta, transfera	99.16
3rm5_A		550	Hydroxymethylpyrimidine/phosphomethylpyrimidine K	99.06
3bgk_A		311	SMU.573, putative uncharacterized protein; alpha/b	98.36
1v8a_A		265	Hydroxyethylthiazole kinase; alpha-beta, ATP bindi	98.12
3rpz_A		279	ADP/ATP-dependent NAD(P)H-hydrate dehydratase; str	98.1
2r3b_A		310	YJEF-related protein; putative kinase in the ribok	98.04
3rss_A		502	Putative uncharacterized protein; unknown function	97.86
3dzv_A		273	4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_	97.12
3k5w_A		475	Carbohydrate kinase; 11206B,helicobacter pylori,PS	95.45
3hpd_A		265	Hydroxyethylthiazole kinase; alpha-beta, ATP bindi	94.23
3nl6_A		540	Thiamine biosynthetic bifunctional enzyme; thiamin	93.05
1ua4_A		455	Glucokinase, ADP-dependent glucokinase; transferas	85.67

>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase, transferase; HET: RIB ADP; 1.98A {Mycobacterium tuberculosis} PDB: 3go7_A*	Back alignment and structure

Probab=100.00  E-value=3.7e-40  Score=307.69  Aligned_cols=262  Identities=15%  Similarity=0.093  Sum_probs=218.7

Q ss_pred             CCcccEEEEccceeeeeeccCc-----------ccccccCChHHHHHHHHHhCCCCeEEEEEecCCCCC----------C
Q 038564            5 HSNHGILIVGNYCHDVLIRNGT-----------VLAETLGGAASFISNVLNGLSISCSLIAKVGHDFKY----------E   63 (353)
Q Consensus         5 ~~~~~ilviG~~~iD~~~~~~~-----------~~~~~~GG~a~N~A~~la~LG~~v~~ig~vG~D~~g----------~   63 (353)
                      .||++|+|+|++++|++...++           .....+||++.|+|++|++||.++.++|.+|+|.+|          +
T Consensus        17 ~mm~~i~viG~~~iD~~~~v~~~p~~g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~L~~~g   96 (310)
T 3go6_A           17 PMAPRVCVVGSVNMDLTFVVDALPRPGETVLAASLTRTPGGKGANQAVAAARAGAQVQFSGAFGDDPAAAQLRAHLRANA   96 (310)
T ss_dssp             --CCEEEEECCCEEEEEEECSSCCCTTCCCCCSEEEEEEECHHHHHHHHHHHTTCEEEEECEECSSHHHHHHHHHHHHTT
T ss_pred             cccCCEEEECCceEEEEEecCCCCCCCCeEEecceeecCCCHHHHHHHHHHHCCCCeEEEEEECCCHHHHHHHHHHHHcC
Confidence            4678999999999999976431           467889999999999999999999999999999776          3


Q ss_pred             cccceeecCCCCCeEEEEEecccCCCCCCccEEEeecCCCCCCCCCCCCCccccccceeeecCCCcHHHHHHHHHHhhhh
Q 038564           64 TSYRPIIVPTSKTTVFHAYFDSISAPSGHADRVLKRVCSCEPITPSDLPDGKFDYGMAVGVGGEILPETLEKMLEICNVV  143 (353)
Q Consensus        64 vd~~~v~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~v  143 (353)
                      |+++++...+.+|+.+++.++.     +++++++...+++..++  ++ ...+...++++++++.+.+.+.++++.++. 
T Consensus        97 V~~~~v~~~~~~T~~~~~~~~~-----~g~~~~~~~~ga~~~l~--~~-~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~-  167 (310)
T 3go6_A           97 VGLDRTVTVPGPSGTAIIVVDA-----SAENTVLVAPGANAHLT--PV-PSAVANCDVLLTQLEIPVATALAAARAAQS-  167 (310)
T ss_dssp             CBCTTCEECSSCCEEEEEEECT-----TSCEEEEEECGGGGGCC--CC-TTTTTTCSEEEECSSSCHHHHHHHHHHHHH-
T ss_pred             CccceeEecCCCCCEEEEEEcC-----CCCEEEEecCChhhhHH--HH-HHHhhcCCEEEECCCCCHHHHHHHHHHHHH-
Confidence            8888887666799999888864     45667766677766666  44 334667788899888888999999998876 


Q ss_pred             hcccccceEEEecCCCccCCCCCChhhhhhcCCcccEeecCHHHHccCCHHHHhccCeEEEeeCCCceEEEEcCceEEEc
Q 038564          144 LVDIQSVIRVFDSVDGTVNPVPLKESGFYHLLPKIGFLKASSEEALFMDVEEVRKLCCVVVTNGREGSEVYYRDGKVKVS  223 (353)
Q Consensus       144 ~~D~~g~~~~~d~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~Ea~~l~~~~~~~~~~vvvT~G~~Ga~~~~~~~~~~~p  223 (353)
                          .+...++|+++...     ..+.+.++++++|++++|++|+..+...    .+.||||+|++|++++++++.+++|
T Consensus       168 ----~g~~v~~D~~~~~~-----~~~~~~~ll~~~dil~~N~~Ea~~l~g~----~~~vvvt~G~~Ga~~~~~~~~~~~~  234 (310)
T 3go6_A          168 ----ADAVVMVNASPAGQ-----DRSSLQDLAAIADVVIANEHEANDWPSP----PTHFVITLGVRGARYVGADGVFEVP  234 (310)
T ss_dssp             ----TTCEEEEECCSSSC-----CHHHHHHHHHHCSEEEEEHHHHHHSSSC----CSEEEEECGGGCEEEEETTEEEEEC
T ss_pred             ----cCCEEEEcCCcccc-----chHHHHHHHhhCCEEEeCHHHHHHHhCC----CCEEEEEECCCCEEEEECCceEEeC
Confidence                56667888864321     2345668899999999999999876422    7899999999999999998899999


Q ss_pred             CccccccCCCCCchHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHhcccCC--CCCCHHHHHHHHhHh
Q 038564          224 PFLANQIDPTGAGDSFLGGLVTGLVQ----GLAVPDAALLGNFFGSITVAQIGL--PKFDSRVLQRVKDEV  288 (353)
Q Consensus       224 a~~v~~vDttGAGDaF~agfl~~l~~----g~~~~~Al~~A~a~Aa~~v~~~G~--~~~~~~~~~~~~~~i  288 (353)
                      +++++++|||||||+|+|||+++|++    |+++++|+++|+++|+++|++.|.  ...+.+++++++++.
T Consensus       235 ~~~v~vvdttGAGDaF~ag~~~~l~~~~~~g~~l~~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~l~~~  305 (310)
T 3go6_A          235 APTVTPVDTAGAGDVFAGVLAANWPRNPGSPAERLRALRRACAAGALATLVSGVGDCAPAAAAIDAALRAN  305 (310)
T ss_dssp             CCCCCCSCCTTHHHHHHHHHHHHCCSSSCCHHHHHHHHHHHHHHHHHHTTSSCSTTCCCCHHHHHHHHHTC
T ss_pred             CCCCCcCcCCCchHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhc
Confidence            99999999999999999999999999    999999999999999999999996  456789999988764

PyMOL of 3go6

>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose metabolic process, PFKB family,11206G, PSI-II, NYSGXRC, structural genomics; HET: ATP; 1.79A {Escherichia coli O6} SCOP: c.72.1.0 PDB: 3k9e_A	Back alignment and structure

>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose metabolic process,ATP ribokinase, PFKB family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A {Klebsiella pneumoniae subsp} PDB: 3i3y_A*	Back alignment and structure

>3ktn_A Carbohydrate kinase, PFKB family; PFKB family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II, NYSGXRC,, structural genomics; 2.26A {Enterococcus faecalis}	Back alignment and structure

>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase, hyperthermophIle, ribokinase ribokinase fold; 1.70A {Methanococcus jannaschii} PDB: 2c49_A	Back alignment and structure

>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site, structura genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str}	Back alignment and structure

>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol phosphate metabolism, ribokinase-L structural genomics; HET: MSE CIT; 1.89A {Corynebacterium glutamicum} SCOP: c.72.1.0	Back alignment and structure

>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.97A {Xylella fastidiosa TEMECULA1} SCOP: c.72.1.0 PDB: 3lki_A*	Back alignment and structure

>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus}	Back alignment and structure

>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A {Halothermothrix orenii}	Back alignment and structure

>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH, NYSGXRC,11206A,PSI2,, structural genomics, protein structure initiative; 1.80A {Escherichia coli k-12} PDB: 3in1_A*	Back alignment and structure

>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB family, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 1.90A {Pyrococcus horikoshii} PDB: 3ih0_A* 3gbu_A*	Back alignment and structure

>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2- keto-3-deoxygluconate kinase; 2.00A {Sulfolobus solfataricus} PDB: 2var_A*	Back alignment and structure

>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding, nucleoside B transferase; HET: MZR ADP; 1.55A {Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A* 3b1r_A*	Back alignment and structure

>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding, transferase; HET: RIB ADP; 1.84A {Escherichia coli} SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A*	Back alignment and structure

>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.70A {Polaromonas SP}	Back alignment and structure

>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto- gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus tokodaii} SCOP: c.72.1.1 PDB: 1wye_A*	Back alignment and structure

>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure initiative, modified lysin, structural genomics; HET: BGC; 2.45A {Clostridium perfringens}	Back alignment and structure

>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics, transferase, riken structural genomics/proteomics initiative, RSGI; HET: KDG ADP; 2.1A {Thermus thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A	Back alignment and structure

>4gm6_A PFKB family carbohydrate kinase; enzyme function initiative, transferase; 2.00A {Listeria grayi dsm 20601}	Back alignment and structure

>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199, PSI-2, PR structure initiative 2; 1.86A {Agrobacterium tumefaciens str}	Back alignment and structure

>4e3a_A Sugar kinase protein; structural genomics, protein structure initiative, nysgrc, S kinase, PSI-biology; HET: ADN; 1.63A {Rhizobium etli} PDB: 3ubo_A*	Back alignment and structure

>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION, PSI-II, NYSGXRC, kinase, structural genomics, structure initiative; HET: ATP; 1.60A {Listeria innocua} PDB: 3hic_A* 3jul_A* 3q1y_A	Back alignment and structure

>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase; 2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB: 1tz3_A* 1tz6_A*	Back alignment and structure

>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc initiative, PSI, joint center for structural genomics, TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1	Back alignment and structure

>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125}	Back alignment and structure

>3vas_A Putative adenosine kinase; ribokinase, enzyme, transferase; HET: ADN; 2.26A {Schistosoma mansoni} PDB: 4dc3_A* 3vaq_A* 3uq6_A* 3uq9_A*	Back alignment and structure

>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics consortium, TBSGC; 1.50A {Mycobacterium tuberculosis} PDB: 2pkk_A* 2pkm_A* 2pkn_A*	Back alignment and structure

>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase inhibitor CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB: 2xtb_A*	Back alignment and structure

>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles gambiae}	Back alignment and structure

>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A*	Back alignment and structure

>3kd6_A Carbohydrate kinase, PFKB family; nucleoside kinase, AMP, PSI-II, NYSGXRC, struc genomics, protein structure initiative; HET: AMP; 1.88A {Chlorobaculum tepidum}	Back alignment and structure

>2fv7_A Ribokinase; structural genomics, structural genomics consort transferase; HET: ADP; 2.10A {Homo sapiens} SCOP: c.72.1.1	Back alignment and structure

>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational changes, transferase, lactose metabolism; HET: MSE ANP TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A*	Back alignment and structure

>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.87A {Shigella flexneri}	Back alignment and structure

>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase, isoform A, structural genomics, structural genomics consortium, SGC transferase; 1.85A {Homo sapiens} PDB: 2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A* 3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A	Back alignment and structure

>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI, protein structure initiative YORK SGX research center for structural genomics; HET: ATP; 1.90A {Enterococcus faecalis} SCOP: c.72.1.1 PDB: 2awd_A*	Back alignment and structure

>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase; HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB: 2i6a_A* 2i6b_A*	Back alignment and structure

>3bf5_A Ribokinase related protein; 10640157, putative ribokinase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728}	Back alignment and structure

>3umo_A 6-phosphofructokinase isozyme 2; glycolysis, transferase, PFK, enzyme; HET: ATP; 1.70A {Escherichia coli} PDB: 3n1c_A* 3cqd_A* 3ump_A* 3uqd_A* 3uqe_A*	Back alignment and structure

>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase (EC 2.7.1.56), struct genomics, joint center for structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga maritima} SCOP: c.72.1.1	Back alignment and structure

>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron vpi-5482}	Back alignment and structure

>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2, glycolysis, transferase; HET: ATP; 1.98A {Escherichia coli} PDB: 3n1c_A*	Back alignment and structure

>3uq6_A Adenosine kinase, putative; ribokinase, transferase; HET: ADN AMP; 2.30A {Schistosoma mansoni} PDB: 3uq9_A*	Back alignment and structure

>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3- deoxygluconokinase, PFKB family carbohy kinase, structural genomics; 2.05A {Thermotoga maritima} SCOP: c.72.1.1	Back alignment and structure

>4e84_A D-beta-D-heptose 7-phosphate kinase; LPS-heptose biosynthesis, beta-clAsp dimerization region, PF carbohydrate kinase, phosphorylation; HET: MSE ANP M7B GMZ; 2.60A {Burkholderia cenocepacia} PDB: 4e8w_A* 4e8y_A* 4e8z_A*	Back alignment and structure

>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase; 2.3A {Staphylococcus aureus}	Back alignment and structure

>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate conformation, signaling protein,transferase; HET: ACP; 1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A* 2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A* 1lik_A*	Back alignment and structure

>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI, protein structure initiative; 2.10A {Bacillus halodurans} SCOP: c.72.1.1	Back alignment and structure

>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein structure initiative, joint center for structural G transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1	Back alignment and structure

>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A*	Back alignment and structure

>1ub0_A THID, phosphomethylpyrimidine kinase; thiamin biosynthesis, ribokinase family, phosphorylati structural genomics; 2.05A {Thermus thermophilus} SCOP: c.72.1.2	Back alignment and structure

>2ddm_A Pyridoxine kinase; pyridoxal kinase, ribokinase, pyridoxal 5'-phosphate, vitamin B6, phosphorylation, transferase; 2.10A {Escherichia coli} PDB: 2ddo_A* 2ddw_A*	Back alignment and structure

>2i5b_A Phosphomethylpyrimidine kinase; ADP complex, PDXK, THID, ribokinase superfamily, transferase; HET: ADP; 2.80A {Bacillus subtilis}	Back alignment and structure

>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION, transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A* 3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A* 1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A* 1yhj_A*	Back alignment and structure

>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB: 3hyo_A* 3ibq_A*	Back alignment and structure

>3mbh_A Putative phosphomethylpyrimidine kinase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PXL; 2.00A {Bacteroides thetaiotaomicron} PDB: 3mbj_A*	Back alignment and structure

>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; HET: MSE; 1.89A {Yersinia pestis} SCOP: c.72.1.5 PDB: 1td2_A* 1vi9_A*	Back alignment and structure

>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A {Trypanosoma brucei}	Back alignment and structure

>1ekq_A Hydroxyethylthiazole kinase; alpha-beta, transferase; 1.50A {Bacillus subtilis} SCOP: c.72.1.2 PDB: 1ekk_A 1c3q_A 1esj_A 1esq_A*	Back alignment and structure

>3rm5_A Hydroxymethylpyrimidine/phosphomethylpyrimidine K THI20; HMP kinase (THID), thiaminase II, transferase; 2.68A {Saccharomyces cerevisiae}	Back alignment and structure

>3bgk_A SMU.573, putative uncharacterized protein; alpha/beta three layer sandwich, unknown function; 2.50A {Streptococcus mutans}	Back alignment and structure

>1v8a_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, structural genomics, riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii} PDB: 3hpd_A	Back alignment and structure

>3rpz_A ADP/ATP-dependent NAD(P)H-hydrate dehydratase; structural genomics, PSI-biology; HET: AMP NPW; 1.51A {Bacillus subtilis} PDB: 3rph_A* 3rq2_A* 3rq5_A* 3rq6_A* 3rq8_A* 3rqh_A* 3rqq_A* 3rqx_A* 1kyh_A	Back alignment and structure

>2r3b_A YJEF-related protein; putative kinase in the ribokinase-like superfamily, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Enterococcus faecalis} PDB: 2r3e_A	Back alignment and structure

>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*	Back alignment and structure

>3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis}	Back alignment and structure

>3k5w_A Carbohydrate kinase; 11206B,helicobacter pylori,PSI-II, NYSGXRC, , structural genomics, protein structure initiative; 2.60A {Helicobacter pylori}	Back alignment and structure

>3hpd_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, ATP-binding, M metal-binding, nucleotide-binding, thiamine biosynthesis; 1.85A {Pyrococcus horikoshii}	Back alignment and structure

>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*	Back alignment and structure

>1ua4_A Glucokinase, ADP-dependent glucokinase; transferase; HET: GLC BGC AMP; 1.90A {Pyrococcus furiosus} SCOP: c.72.1.3	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		353
d1vk4a_		288	c.72.1.1 (A:) Hypothetical protein TM0415 {Thermot	2e-24
d2abqa1		306	c.72.1.1 (A:1-306) Fructose 1-phosphate kinase Fru	1e-17
d1vm7a_		299	c.72.1.1 (A:) Ribokinase {Thermotoga maritima [Tax	5e-17
d1v19a_		302	c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Ther	3e-16
d1rkda_		306	c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId:	1e-15
d2f02a1		313	c.72.1.1 (A:1-313) Tagatose-6-phosphate kinase Lac	2e-14
d2afba1		333	c.72.1.1 (A:-2-330) 2-keto-3-deoxygluconate kinase	4e-13
d2absa1		350	c.72.1.1 (A:10-359) Adenosine kinase {Toxoplasma g	1e-12
d1tyya_		304	c.72.1.1 (A:) Aminoimidazole riboside kinase {Salm	2e-12
d1bx4a_		342	c.72.1.1 (A:) Adenosine kinase {Human (Homo sapien	5e-12
d2ajra1		319	c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {T	4e-11
d2dcna1		308	c.72.1.1 (A:2-309) Hypothetical fructokinase ST247	5e-11
d2fv7a1		308	c.72.1.1 (A:15-322) Ribokinase {Human (Homo sapien	3e-10

>d1vk4a_ c.72.1.1 (A:) Hypothetical protein TM0415 {Thermotoga maritima [TaxId: 2336]} Length = 288	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Hypothetical protein TM0415
species: Thermotoga maritima [TaxId: 2336]

 Score = 98.9 bits (245), Expect = 2e-24
 Identities = 43/285 (15%), Positives = 89/285 (31%), Gaps = 16/285 (5%)

Query: 4   NHSNHGILIVGNYCHDVLIRNGTVLAETLGGAASFISNVLNGLSISCSLIAKVGHD-FKY 62
           +H +H I  +G+   DV + +G       GG     +   + L +   +I K   +    
Sbjct: 3   HHHHHMITFIGHVSKDVNVVDGKR-EIAYGGGVVMGAITSSLLGVKTKVITKCTREDVSK 61

Query: 63  ETSYRPIIVPTSKTTVFHAYFDSISAPSGHADRVLKRVCSCEPITPSDLPDGKFDYGMAV 122
            +  R   V                  S    R    + + +P T SDL   + +     
Sbjct: 62  FSFLRDNGVEVVFLKSPRTTSIENRYGSDPDTRESFLISAADPFTESDLAFIEGEAVHIN 121

Query: 123 GVG-GEILPETLEKMLEICNVVLVDIQSVIRVFDSVDGTVNPVPLKESGFYHLLPKIGFL 181
            +  GE   + +  +      +  D Q  +RV ++         +KE      L  +   
Sbjct: 122 PLWYGEFPEDLIPVLRRKVMFLSADAQGFVRVPENEKLVYRDWEMKE----KYLKYLDLF 177

Query: 182 KASSEEALFMDVEEVRK--------LCCVVVTNGREGSEVYYRDGKVKVSPFLANQIDPT 233
           K  S EA  +      +            ++        + +     + S    +    T
Sbjct: 178 KVDSREAETLTGTNDLRESCRIIRSFGAKIILATHASGVIVFDGNFYEASFRSWSLEGRT 237

Query: 234 GAGDSFLGGLVTG-LVQGLAVPDAALLGNFFGSITVAQIGLPKFD 277
           G GD+     + G + + +++  A        S+ +   G  + +
Sbjct: 238 GRGDTCTAAFLVGFVFKKMSIEKATKFAAAVTSVKMRHPGPLRRE 282

PyMOL of d1vk4a_

>d2abqa1 c.72.1.1 (A:1-306) Fructose 1-phosphate kinase FruB {Bacillus halodurans [TaxId: 86665]} Length = 306	Back information, alignment and structure

>d1vm7a_ c.72.1.1 (A:) Ribokinase {Thermotoga maritima [TaxId: 2336]} Length = 299	Back information, alignment and structure

>d1v19a_ c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Thermus thermophilus [TaxId: 274]} Length = 302	Back information, alignment and structure

>d1rkda_ c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 562]} Length = 306	Back information, alignment and structure

>d2f02a1 c.72.1.1 (A:1-313) Tagatose-6-phosphate kinase LacC {Enterococcus faecalis [TaxId: 1351]} Length = 313	Back information, alignment and structure

>d2afba1 c.72.1.1 (A:-2-330) 2-keto-3-deoxygluconate kinase {Thermotoga maritima, TM0067 [TaxId: 2336]} Length = 333	Back information, alignment and structure

>d2absa1 c.72.1.1 (A:10-359) Adenosine kinase {Toxoplasma gondii [TaxId: 5811]} Length = 350	Back information, alignment and structure

>d1tyya_ c.72.1.1 (A:) Aminoimidazole riboside kinase {Salmonella typhimurium [TaxId: 90371]} Length = 304	Back information, alignment and structure

>d1bx4a_ c.72.1.1 (A:) Adenosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 342	Back information, alignment and structure

>d2ajra1 c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {Thermotoga maritima [TaxId: 2336]} Length = 319	Back information, alignment and structure

>d2dcna1 c.72.1.1 (A:2-309) Hypothetical fructokinase ST2478 {Sulfolobus tokodaii [TaxId: 111955]} Length = 308	Back information, alignment and structure

>d2fv7a1 c.72.1.1 (A:15-322) Ribokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 308	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		353
d1v19a_		302	2-keto-3-deoxygluconate kinase {Thermus thermophil	100.0
d1vm7a_		299	Ribokinase {Thermotoga maritima [TaxId: 2336]}	100.0
d2afba1		333	2-keto-3-deoxygluconate kinase {Thermotoga maritim	100.0
d1rkda_		306	Ribokinase {Escherichia coli [TaxId: 562]}	100.0
d1tyya_		304	Aminoimidazole riboside kinase {Salmonella typhimu	100.0
d2dcna1		308	Hypothetical fructokinase ST2478 {Sulfolobus tokod	100.0
d2absa1		350	Adenosine kinase {Toxoplasma gondii [TaxId: 5811]}	100.0
d2f02a1		313	Tagatose-6-phosphate kinase LacC {Enterococcus fae	100.0
d2abqa1		306	Fructose 1-phosphate kinase FruB {Bacillus halodur	100.0
d2fv7a1		308	Ribokinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1bx4a_		342	Adenosine kinase {Human (Homo sapiens) [TaxId: 960	100.0
d2ajra1		319	Putative sugar kinase TM0828 {Thermotoga maritima	99.97
d1vk4a_		288	Hypothetical protein TM0415 {Thermotoga maritima [	99.97
d1vi9a_		288	Pyridoxamine kinase {Escherichia coli [TaxId: 562]	99.24
d1ub0a_		258	4-amino-5-hydroxymethyl-2-methylpyrimidine phospha	98.85
d1jxha_		266	4-amino-5-hydroxymethyl-2-methylpyrimidine phospha	98.76
d1lhpa_		309	Pyridoxal kinase {Sheep (Ovis aries) [TaxId: 9940]	98.61
d1kyha_		275	Hypothetical protein YxkO {Bacillus subtilis [TaxI	97.58
d1ekqa_		269	Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Ba	96.86
d1v8aa_		264	Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Ar	95.76
d2ax3a1		278	Hypothetical protein TM0922, C-terminal domain {Th	94.34

>d1v19a_ c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: 2-keto-3-deoxygluconate kinase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.5e-36  Score=278.44  Aligned_cols=269  Identities=20%  Similarity=0.207  Sum_probs=197.5

Q ss_pred             cccEEEEccceeeeeeccCc------ccccccCChHHHHHHHHHhCCCCeEEEEEecCCCCCC----------cccceee
Q 038564            7 NHGILIVGNYCHDVLIRNGT------VLAETLGGAASFISNVLNGLSISCSLIAKVGHDFKYE----------TSYRPII   70 (353)
Q Consensus         7 ~~~ilviG~~~iD~~~~~~~------~~~~~~GG~a~N~A~~la~LG~~v~~ig~vG~D~~g~----------vd~~~v~   70 (353)
                      |++|+|+|++++|++...++      .+..++||+|.|+|.+|++||.+|.++|.+|+|..|.          +++.++.
T Consensus         1 ~~~i~viG~~~vD~~~~~~~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~v~~~~~iG~D~~g~~i~~~l~~~gi~~~~~~   80 (302)
T d1v19a_           1 MLEVVTAGEPLVALVPQEPGHLRGKRLLEVYVGGAEVNVAVALARLGVKVGFVGRVGEDELGAMVEERLRAEGVDLTHFR   80 (302)
T ss_dssp             CCSEEEESCCEEEEEESSSSCGGGCSEEEEEEECHHHHHHHHHHHTTCCEEEEEEEESSHHHHHHHHHHHHHTCBCTTEE
T ss_pred             CCeEEEECcceEEEecCCCCceeecceEEEecCcHHHHHHHHHHHcCCCEEEEEEEcCCcccccchhhhhhcccccchhc
Confidence            68999999999999987654      4567899999999999999999999999999998773          7777776


Q ss_pred             cCCCCCeEEEEEecccCCCCCCccEEEee--cCCCCCCCCCCCCCccccccceeeecC------CCcHHHHHHHHHHhhh
Q 038564           71 VPTSKTTVFHAYFDSISAPSGHADRVLKR--VCSCEPITPSDLPDGKFDYGMAVGVGG------EILPETLEKMLEICNV  142 (353)
Q Consensus        71 ~~~~~T~~~~~~~~~~~~~~~~~~~~~~~--~~a~~~l~~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~a~~  142 (353)
                      ..+..++.+.+.+..     .+.+++...  ......++.++.....+...+++++..      +...+.+..+++..+.
T Consensus        81 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (302)
T d1v19a_          81 RAPGFTGLYLREYLP-----LGQGRVFYYRKGSAGSALAPGAFDPDYLEGVRFLHLSGITPALSPEARAFSLWAMEEAKR  155 (302)
T ss_dssp             EESSCCCEEEEEECT-----TSCEEEEEECTTCSGGGCCTTSSCGGGGTTCSEEEEETHHHHHCHHHHHHHHHHHHHHHT
T ss_pred             cccccccccchhhcc-----ccccccccccccccchhhccccccHHHHhcccEEeeeccccccchhHHHHHHHHHHHHHh
Confidence            544556666666543     344444332  233344555555544444444444431      1223455666666664


Q ss_pred             hhcccccceEEEecCCCccCCCCC-ChhhhhhcCCcccEeecCHHHHccC--CH---HHHhccCeEEEeeCCCceEEEEc
Q 038564          143 VLVDIQSVIRVFDSVDGTVNPVPL-KESGFYHLLPKIGFLKASSEEALFM--DV---EEVRKLCCVVVTNGREGSEVYYR  216 (353)
Q Consensus       143 v~~D~~g~~~~~d~~~~~~~~~~~-~~~~~~~~l~~~dvl~~n~~Ea~~l--~~---~~~~~~~~vvvT~G~~Ga~~~~~  216 (353)
                           .+....+|++.+....... ....+...++.+|++++|++|++..  ..   ....+.+.+|||+|++|++++++
T Consensus       156 -----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~e~~~~~~~~~~~~~~~~~~~viit~G~~G~~~~~~  230 (302)
T d1v19a_         156 -----RGVRVSLDVNYRQTLWSPEEARGFLERALPGVDLLFLSEEEAELLFGRVEEALRALSAPEVVLKRGAKGAWAFVD  230 (302)
T ss_dssp             -----TTCEEEEECCCCTTTCCHHHHHHHHHHHGGGCSEEEEEHHHHHHHHSSTTHHHHHTCCSEEEEECTTSCEEEEET
T ss_pred             -----cCCccccccchhhhccchhhhHHHHHhhhhhccchhhhhhhhhhhhhhhhhhhhhccceEEEEecCCCCCccccc
Confidence                 4555667765432211111 1123556788999999999998653  11   12346789999999999999999


Q ss_pred             CceEEEcCccccccCCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccCC-CC-CCHHHHHHHH
Q 038564          217 DGKVKVSPFLANQIDPTGAGDSFLGGLVTGLVQGLAVPDAALLGNFFGSITVAQIGL-PK-FDSRVLQRVK  285 (353)
Q Consensus       217 ~~~~~~pa~~v~~vDttGAGDaF~agfl~~l~~g~~~~~Al~~A~a~Aa~~v~~~G~-~~-~~~~~~~~~~  285 (353)
                      ++.+++|++++++||||||||+|+|||+|++++|+++++|+++|+++||+++++.|. |. ++.+++++++
T Consensus       231 ~~~~~~p~~~v~vvDttGAGDaf~a~~~~~~~~g~~~~~a~~~a~~~Aa~~v~~~G~~~~~p~~~~i~~~l  301 (302)
T d1v19a_         231 GRRVEGSAFAVEAVDPVGAGDAFAAGYLAGAVWGLPVEERLRLANLLGASVAASRGDHEGAPYREDLEVLL  301 (302)
T ss_dssp             TEEEECCCCCCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSSSSSTTCCCHHHHHHCC
T ss_pred             cccccccccccccCCCCChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999994 33 3578888765

PyMOL of d1v19a_

>d1vm7a_ c.72.1.1 (A:) Ribokinase {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1rkda_ c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1tyya_ c.72.1.1 (A:) Aminoimidazole riboside kinase {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d2dcna1 c.72.1.1 (A:2-309) Hypothetical fructokinase ST2478 {Sulfolobus tokodaii [TaxId: 111955]}	Back information, alignment and structure

>d2absa1 c.72.1.1 (A:10-359) Adenosine kinase {Toxoplasma gondii [TaxId: 5811]}	Back information, alignment and structure

>d2f02a1 c.72.1.1 (A:1-313) Tagatose-6-phosphate kinase LacC {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d2abqa1 c.72.1.1 (A:1-306) Fructose 1-phosphate kinase FruB {Bacillus halodurans [TaxId: 86665]}	Back information, alignment and structure

>d2fv7a1 c.72.1.1 (A:15-322) Ribokinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1bx4a_ c.72.1.1 (A:) Adenosine kinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ajra1 c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1vk4a_ c.72.1.1 (A:) Hypothetical protein TM0415 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1vi9a_ c.72.1.5 (A:) Pyridoxamine kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ub0a_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase (HMP-phosphate kinase, ThiD) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1jxha_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase (HMP-phosphate kinase, ThiD) {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1lhpa_ c.72.1.5 (A:) Pyridoxal kinase {Sheep (Ovis aries) [TaxId: 9940]}	Back information, alignment and structure

>d1kyha_ c.72.1.4 (A:) Hypothetical protein YxkO {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1ekqa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1v8aa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d2ax3a1 c.72.1.4 (A:212-489) Hypothetical protein TM0922, C-terminal domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure