Citrus Sinensis ID: 038576

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-
Protein Sequence
MHLLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMSLVDEKLWAWDRDLNTTIQYVYLKIKK
Secondary Structure (PSIPRED)
cccccccHHccccccccEEEEEcccccccccccccccccEEEEccccccccHHHHHccccccEEcccccccccccccccccccccccEEEccccccccccccccccccccccHHHccccccccEEEEEEcccccccccccccccccEEEEEEccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccEEEcccccccccccEEEEccccccccccccccccccccEEEEEcccccccccccccccccccccEEEEccccccEEEcccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEEEcccccccccccccccccccEEEEEEcccccccccccHHHHHHHHEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHcccEEEEcccccccHHHHHHHHccEEEEccccccHHccHHHHcHHHccEEEccccccccEccHHHHHHHHHHHEEEEcccccHHHHHcccccccccccHHHHHccccccEEEEEEcccHccccccccHHHccEEEEEEcccccccccccccccEEccccccccEcccccHHHHHccHcccccccccccccccHHcHHHHHHHHHccccccccccccccccccccccHcEEEEcccccccccccccccccccEEEEEcccccHHHcccHHHHHHHHHHcEEEEcccHHHHEEEccccccccccccccEEEcccccEEEEcccccccEEcccccccEEEcccccEEEEEcccccEEcccccccccccEEEEEEcccccEEEccccccHHHHHHHEHccc
Coil and Loop (DISEMBL)
mhllalpsslgllqnlqtlslddcelgdmaIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLnlskcfelkvippnvissLSRLEELyigqspiqwgkvegvdgerrnasldelnnlskltSLEILIQdektlprdLSFFKMLQRYRILIgdsreydawdgiSRISklkltnganiclneghimqlkriedltsggdseALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCdnlthlvpsstsfqnlttltVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIvadeddegdnyaaQDEIVFSELKElnlsnlqsltsfscsgnncafkfpslerlvvnrcpnmkifsegelstpkLQKVQMSLVDEKLWAWDRDLNTTIQYVYLKIKK
Flexible Loop (DISEMBL)
MHLLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLdelnnlskltsleiliqdektlprdlsfFKMLQRYRILigdsreydawDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIvadeddegdNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIfsegelstpklQKVQMSLVDEKLWAWDRDLNTTIQYVYLKIKK
Low Complexity Region (SEG)
MHllalpsslgllqnlqtlslDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMSLVDEKLWAWDRDLNTTIQYVYLKIKK
Disordered region (IsUnstruct)
********SLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDG********ELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSG***EALYTSFKNV******************************LEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMSLVDEKLWAWDRDLNTTIQYVYLKI**
Disordered Region (DISOPRED)
MHLLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDG****ASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVAD*D********Q*EIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMSLVDEKLWAWDRDLNTTIQYVYLK***
Disordered Region (DISEMBL)
MHLLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMSLVDEKLWAWDRDLNTTIQYVYLKIKK
Disordered Region (DISPRO)
**LLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDD*GDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMSLVDEKLWAWDRDLNTTIQYVYLKIKK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHLLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHxxxxxxxxxxxxxxxxxxxxxSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMSLVDEKLWAWDRDLNTTIQYVYLKIKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	411	2.2.26 [Sep-21-2011]
Q9T048	985	Disease resistance protei	yes	no	0.357	0.149	0.309	3e-07
Q42484	909	Disease resistance protei	no	no	0.742	0.335	0.244	1e-06
Q96NW7	1537	Leucine-rich repeat-conta	yes	no	0.199	0.053	0.397	1e-06
F1MCA7	1536	Leucine-rich repeat-conta	yes	no	0.199	0.053	0.397	1e-06
P70587	1490	Leucine-rich repeat-conta	yes	no	0.199	0.055	0.386	5e-06
Q80TE7	1490	Leucine-rich repeat-conta	yes	no	0.199	0.055	0.386	5e-06
Q9LRR5	1424	Putative disease resistan	no	no	0.428	0.123	0.252	0.0001
Q6DHL5	238	Leucine-rich repeat-conta	no	no	0.184	0.319	0.384	0.0003
Q6GPJ5	605	Leucine-rich repeat-conta	N/A	no	0.340	0.231	0.267	0.0004
Q96RT1	1412	Protein LAP2 OS=Homo sapi	no	no	0.194	0.056	0.360	0.0004

>sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 85/152 (55%), Gaps = 5/152 (3%)

Query: 5   ALPS-SLGLLQNLQTLSLDDC-ELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLR 62
           + PS SL  L +L +L L DC +L  +  +  L KL +L L G+ + E    + +L + R
Sbjct: 564 SFPSCSLLRLFSLHSLFLRDCFKLVKLPSLETLAKLELLDLCGTHILEFPRGLEELKRFR 623

Query: 63  LLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKL 122
            L+LS+   L+ IP  V+S LS LE L +  S  +W  V+G + ++  A+++E+  L +L
Sbjct: 624 HLDLSRTLHLESIPARVVSRLSSLETLDMTSSHYRWS-VQG-ETQKGQATVEEIGCLQRL 681

Query: 123 TSLEILIQDEK-TLPRDLSFFKMLQRYRILIG 153
             L I +      L +  ++ K L+++++++G
Sbjct: 682 QVLSIRLHSSPFLLNKRNTWIKRLKKFQLVVG 713

Disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1

 Score = 55.1 bits (131), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 150/368 (40%), Gaps = 63/368 (17%)

Query: 32  IGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYI 91
           I  L +L  L++ G+ +  L  E+G L +L+ L+L +   L+ IP + I  LS+LE L +
Sbjct: 577 IKYLVELYHLSMSGTKISVLPQELGNLRKLKHLDLQRTQFLQTIPRDAICWLSKLEVLNL 636

Query: 92  GQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRIL 151
             S   W      + E       +L  L  LT+L I +   +TL     F  + +  + L
Sbjct: 637 YYSYAGWELQSFGEDEAEELGFADLEYLENLTTLGITVLSLETLKTLFEFGALHKHIQHL 696

Query: 152 IGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVE 211
                  +  + +   +   LTN         H   L+R+  + S  D E L T   + E
Sbjct: 697 -----HVEECNELLYFNLPSLTN---------HGRNLRRL-SIKSCHDLEYLVTP-ADFE 740

Query: 212 NGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSSTS---FQNLTTL 268
           N                            LE L++    NLT +  +S S    +N+  +
Sbjct: 741 NDW-----------------------LPSLEVLTLHSLHNLTRVWGNSVSQDCLRNIRCI 777

Query: 269 TVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELK 328
            +  C+ + NV   S  + L +L  + +  C  I E+++    E ++ + +D  +F  LK
Sbjct: 778 NISHCNKLKNV---SWVQKLPKLEVIELFDCREIEELIS----EHESPSVEDPTLFPSLK 830

Query: 329 ELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMSL-- 386
            L   +L  L S   S     F F  +E LV+  CP +K     E      ++ QM+L  
Sbjct: 831 TLRTRDLPELNSILPS----RFSFQKVETLVITNCPRVKKLPFQE------RRTQMNLPT 880

Query: 387 --VDEKLW 392
              +EK W
Sbjct: 881 VYCEEKWW 888

Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2.

Arabidopsis thaliana (taxid: 3702)

>sp|Q96NW7|LRRC7_HUMAN Leucine-rich repeat-containing protein 7 OS=Homo sapiens GN=LRRC7 PE=1 SV=1

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 58/88 (65%), Gaps = 6/88 (6%)

Query: 3   LLALPSSLGLLQNLQTLSLDDCELGDMAI-IGDLKKLVILALRGSDMEELAGEIGQLTQL 61
           L +LPS++G L +L+TL++D+  L ++   IG  K + +++LR + +E L  EIGQ+ +L
Sbjct: 311 LESLPSTIGYLHSLRTLAVDENFLPELPREIGSCKNVTVMSLRSNKLEFLPEEIGQMQKL 370

Query: 62  RLLNLSKCFELKVIPPNVISSLSRLEEL 89
           R+LNLS    LK +P     S ++L+EL
Sbjct: 371 RVLNLSDN-RLKNLP----FSFTKLKEL 393

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Homo sapiens (taxid: 9606)

>sp|F1MCA7|LRRC7_BOVIN Leucine-rich repeat-containing protein 7 OS=Bos taurus GN=LRRC7 PE=3 SV=3

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 58/88 (65%), Gaps = 6/88 (6%)

Query: 3   LLALPSSLGLLQNLQTLSLDDCELGDMAI-IGDLKKLVILALRGSDMEELAGEIGQLTQL 61
           L +LPS++G L +L+TL++D+  L ++   IG  K + +++LR + +E L  EIGQ+ +L
Sbjct: 310 LESLPSTIGYLHSLRTLAVDENFLPELPREIGSCKNVTVMSLRSNKLEFLPEEIGQMQKL 369

Query: 62  RLLNLSKCFELKVIPPNVISSLSRLEEL 89
           R+LNLS    LK +P     S ++L+EL
Sbjct: 370 RVLNLSDN-RLKNLP----FSFTKLKEL 392

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Bos taurus (taxid: 9913)

>sp|P70587|LRRC7_RAT Leucine-rich repeat-containing protein 7 OS=Rattus norvegicus GN=Lrrc7 PE=1 SV=2

 Score = 52.8 bits (125), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 57/88 (64%), Gaps = 6/88 (6%)

Query: 3   LLALPSSLGLLQNLQTLSLDDCELGDMAI-IGDLKKLVILALRGSDMEELAGEIGQLTQL 61
           L +LP ++G L +L+TL++D+  L ++   IG  K + +++LR + +E L  EIGQ+ +L
Sbjct: 311 LESLPPTIGYLHSLRTLAVDENFLPELPREIGSCKNVTVMSLRSNKLEFLPEEIGQMQRL 370

Query: 62  RLLNLSKCFELKVIPPNVISSLSRLEEL 89
           R+LNLS    LK +P     S ++L+EL
Sbjct: 371 RVLNLSDN-RLKNLP----FSFTKLKEL 393

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Rattus norvegicus (taxid: 10116)

>sp|Q80TE7|LRRC7_MOUSE Leucine-rich repeat-containing protein 7 OS=Mus musculus GN=Lrrc7 PE=1 SV=2

 Score = 52.8 bits (125), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 57/88 (64%), Gaps = 6/88 (6%)

Query: 3   LLALPSSLGLLQNLQTLSLDDCELGDMAI-IGDLKKLVILALRGSDMEELAGEIGQLTQL 61
           L +LP ++G L +L+TL++D+  L ++   IG  K + +++LR + +E L  EIGQ+ +L
Sbjct: 311 LESLPPTIGYLHSLRTLAVDENFLPELPREIGSCKNVTVMSLRSNKLEFLPEEIGQMQRL 370

Query: 62  RLLNLSKCFELKVIPPNVISSLSRLEEL 89
           R+LNLS    LK +P     S ++L+EL
Sbjct: 371 RVLNLSDN-RLKNLP----FSFTKLKEL 393

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Mus musculus (taxid: 10090)

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 93/210 (44%), Gaps = 34/210 (16%)

Query: 194  LTSGGDSEALYTS-FKNVENGMEAM-MRGINHRRELKQIFKQESSNAKDLEKLSIFMCDN 251
            + S   SEA+  S + + E  ME + +  I+H  EL Q          +L+ L I  CD 
Sbjct: 1054 VPSPRSSEAIKPSQYDDDETDMEYLKVTDISHLMELPQ----------NLQSLHIDSCDG 1103

Query: 252  LTHLVPSST-SFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADED 310
            LT L  + T S+ NL  L +  CH + +   S    +L   + + I+ C  +     +  
Sbjct: 1104 LTSLPENLTESYPNLHELLIIACHSLESFPGSHPPTTL---KTLYIRDCKKLN--FTESL 1158

Query: 311  DEGDNYAAQDEI---------------VFSELKELNLSNLQSLTSFSCSGNNCAFKFPSL 355
                +Y+  + +               +F +L+ L++ + +S  +FS        +  +L
Sbjct: 1159 QPTRSYSQLEYLFIGSSCSNLVNFPLSLFPKLRSLSIRDCESFKTFSIHAGLGDDRI-AL 1217

Query: 356  ERLVVNRCPNMKIFSEGELSTPKLQKVQMS 385
            E L +  CPN++ F +G L TPKL  + +S
Sbjct: 1218 ESLEIRDCPNLETFPQGGLPTPKLSSMLLS 1247

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DHL5|LRC57_DANRE Leucine-rich repeat-containing protein 57 OS=Danio rerio GN=lrrc57 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 2/78 (2%)

Query: 3   LLALPSSLGLLQNLQTLSLDDCELGDM-AIIGDLKKLVILALRGSDMEELAGEIGQLTQL 61
           L +LP+ +G L+ L+TL L+  +L  + + IG LK L  L+L G+  +E    +G L QL
Sbjct: 73  LTSLPNDIGKLKKLETLILNGNQLKQLPSSIGQLKSLRTLSLSGNQFKEFPSGLGTLRQL 132

Query: 62  RLLNLSKCFELKVIPPNV 79
            +L+LSK  +++V+P  V
Sbjct: 133 DVLDLSKN-QIRVVPAEV 149

Danio rerio (taxid: 7955)

>sp|Q6GPJ5|LRC40_XENLA Leucine-rich repeat-containing protein 40 OS=Xenopus laevis GN=lrrc40 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 13/153 (8%)

Query: 6   LPSSLGLLQNLQTLSL-DDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLL 64
           LP S+G L  L+ L + ++C     + +G L  LV   L  + +  L  EIG++  LR L
Sbjct: 166 LPDSIGHLSILEELDVSNNCLRSVSSSVGQLTGLVKFNLSSNKLTALPTEIGKMKNLRQL 225

Query: 65  NLSKCFELKVIPPNVISSLSRLEELYIGQSPIQW----------GKVEGVDGERRNASLD 114
           + +      V  P  ++ +  LE+LY+ Q+ + +           ++   + + +    +
Sbjct: 226 DCTSNLLENV--PASVAGMESLEQLYLRQNKLTYLPELPFLTKLKELHVGNNQIQTLGPE 283

Query: 115 ELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQR 147
            L NLS L+ LE+     K LP+++S  K L+R
Sbjct: 284 HLQNLSSLSVLELRYNKLKVLPKEISLLKGLER 316

Xenopus laevis (taxid: 8355)

>sp|Q96RT1|LAP2_HUMAN Protein LAP2 OS=Homo sapiens GN=ERBB2IP PE=1 SV=2

 Score = 46.2 bits (108), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 6/86 (6%)

Query: 5   ALPSSLGLLQNLQTLSLDDCELGDMAI-IGDLKKLVILALRGSDMEELAGEIGQLTQLRL 63
           ALPSS+G L NL+T + D   L  +   IG  K + +L L  + +E L  E+G + +L++
Sbjct: 313 ALPSSIGQLTNLRTFAADHNYLQQLPPEIGSWKNITVLFLHSNKLETLPEEMGDMQKLKV 372

Query: 64  LNLSKCFELKVIPPNVISSLSRLEEL 89
           +NLS    LK +P     S ++L++L
Sbjct: 373 INLSDN-RLKNLP----FSFTKLQQL 393

Acts as an adapter for the receptor ERBB2, in epithelia. By binding the unphosphorylated 'Tyr-1248' of receptor ERBB2, it may contribute to stabilize this unphosphorylated state.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	411
224111296	1315	cc-nbs-lrr resistance protein [Populus t	0.924	0.288	0.354	1e-47
255563252	1603	Disease resistance protein RPS5, putativ	0.883	0.226	0.382	1e-45
224125154	949	cc-nbs-lrr resistance protein [Populus t	0.892	0.386	0.373	1e-44
356555123	1512	PREDICTED: disease resistance protein At	0.934	0.253	0.359	2e-44
255574526	1232	Disease resistance protein RFL1, putativ	0.880	0.293	0.368	7e-43
224110992	2359	cc-nbs-lrr resistance protein [Populus t	0.836	0.145	0.375	1e-42
224111284	1340	cc-nbs-lrr resistance protein [Populus t	0.900	0.276	0.353	2e-42
298204973	852	unnamed protein product [Vitis vinifera]	0.861	0.415	0.362	6e-42
224143316	1337	cc-nbs-lrr resistance protein [Populus t	0.897	0.275	0.350	6e-42
224083434	1144	cc-nbs-lrr resistance protein [Populus t	0.917	0.329	0.338	1e-41

>gi|224111296|ref|XP_002332952.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834264|gb|EEE72741.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 149/420 (35%), Positives = 230/420 (54%), Gaps = 40/420 (9%)

Query: 1   MHLLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQ 60
           ++L  LPSSL  L+NLQTL LD C L D++IIG+L KL +L+L  S++  L  EIG++T+
Sbjct: 552 VNLSPLPSSLQFLENLQTLCLDHCVLEDISIIGELNKLKVLSLMSSNIVRLPREIGKVTR 611

Query: 61  LRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLS 120
           L+LL+LS C  L+VI PN +SSL+RLE+LY+G S ++W + EG   +R NA L EL +LS
Sbjct: 612 LQLLDLSNCERLEVISPNALSSLTRLEDLYMGNSFVKW-ETEGSSSQRNNACLSELKHLS 670

Query: 121 KLTSLEILIQDEKTLPRDL-SFFKMLQRYRILIGDSREYDAWDGISRISKLKLTN----- 174
            L++L + I D   +P+DL S F+ L+R+RI IGD  ++   D  SR  KLKL       
Sbjct: 671 NLSTLHMQITDADNMPKDLFSSFQNLERFRIFIGDGWDWSVKDATSRTLKLKLNTVIQLE 730

Query: 175 -GANICLN---EGHIMQLKRIEDLTSGGDSEAL-YTSFKNVEN--GMEAMMRGINHRREL 227
            G N  L    E H+ +L  ++ + +  D E        +V+N  G++ ++  I  R   
Sbjct: 731 EGVNTLLKITEELHLQELNGVKSILNDLDGEGFPQLRHLHVQNCPGVQYIINSI--RMGP 788

Query: 228 KQIFKQESSNAKDLEKLSIFMCDNLTHLVPS---STSFQNLTTLTVWGCHGMINVLTSST 284
           +  F        +L+ L +   DNL  +      + S  NL  L V  CH + N+ + S 
Sbjct: 789 RTAF-------LNLDSLFLENLDNLEKICHGQLMAESLGNLRILKVESCHRLKNLFSVSM 841

Query: 285 ARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCS 344
           AR LVRL ++TI  C ++ E+VA E+ E D    +  I F++L+ L L  L   TSF  +
Sbjct: 842 ARRLVRLEEITIIDCKIMEEVVA-EESENDAADGEPIIEFTQLRRLTLQCLPQFTSFHSN 900

Query: 345 GNNCAFKFPSLERLVVNRCPNMKIFSEGELST-----------PKLQKVQMSLVD-EKLW 392
               +      ++L+ +   + +I +  EL T           P L+ +++S +  EK+W
Sbjct: 901 VEESS-DSQRRQKLLASEARSKEIVAGNELGTSMSLFNTKILFPNLEDLKLSSIKVEKIW 959

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563252|ref|XP_002522629.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223538105|gb|EEF39716.1| Disease resistance protein RPS5, putative [Ricinus communis]

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 150/392 (38%), Positives = 211/392 (53%), Gaps = 29/392 (7%)

Query: 1   MHLLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQ 60
           MH  +LP SLG L+NL TL LD C L D+AIIG+L  L IL+ + SD+ EL  EI QLT+
Sbjct: 560 MHFSSLPPSLGFLKNLFTLCLDWCALRDVAIIGELTGLTILSFKHSDIVELPREIRQLTK 619

Query: 61  LRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLS 120
           L+ L+LS C +LKVIP  +IS L++LEELY+  S   W  V+G++ + RNASL EL  L 
Sbjct: 620 LKFLDLSHCLKLKVIPAKIISELTQLEELYMNNSFDLW-DVQGINNQ-RNASLAELECLP 677

Query: 121 KLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICL 180
            LT+LEI + D K LP+DL FF+ L+R+RI IGD        G SR  KLKL N ++I L
Sbjct: 678 YLTTLEICVLDAKILPKDL-FFRKLERFRIFIGDVWSGTGDYGTSRTLKLKL-NTSSIHL 735

Query: 181 NEG-----------HIMQLKRIEDLTSGGDSEALYTSFK--NVENGMEAMMRGINHRREL 227
             G           ++ ++K I+ +    DS+  +T  K  +V+N  E       +RR  
Sbjct: 736 EHGLSILLEVTEDLYLAEVKGIKSVLYDLDSQG-FTQLKHLDVQNDPEIQYIIDPNRRSP 794

Query: 228 KQIFK-QESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTAR 286
              F   ES    +L  L    C  LT     + SF  L +LTV  C  + N+ + S  R
Sbjct: 795 CNAFPILESLYLDNLMSLEKICCGKLT-----TGSFSKLRSLTVVKCDRLKNLFSFSMMR 849

Query: 287 SLVRLRQMTIKVCVMITEIVADEDDEGDN-YAAQDEIVFSELKELNLSNLQSLTSFSCSG 345
            L++L+QM +  C  + EIVA   ++ DN Y A   +  ++L  L L  L    SF CS 
Sbjct: 850 CLLQLQQMKVVDCANLEEIVACGSEDTDNDYEA---VKLTQLCSLTLKRLPMFKSF-CSK 905

Query: 346 NNCAFKFPSLERLVVNRCPNMKIFSEGELSTP 377
              +     +++ +       +I  +GEL  P
Sbjct: 906 KKVSPISLRVQKQLTTDTGLKEIAPKGELGDP 937

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125154|ref|XP_002319513.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222857889|gb|EEE95436.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 145/388 (37%), Positives = 209/388 (53%), Gaps = 21/388 (5%)

Query: 1   MHLLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQ 60
           + L  LPSSL  L+ LQTL LD C L D+A+IG+LK L +L+L  S++  L  EIGQLT+
Sbjct: 556 VQLPTLPSSLQFLEKLQTLCLDSCGLKDIAMIGELKMLKVLSLIDSNIVRLPREIGQLTR 615

Query: 61  LRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLS 120
           L+LL+LS    L++IPPNV+S L++LE+LY+  S +QW ++EG+D +R NASL EL  L 
Sbjct: 616 LQLLDLSNNPRLEMIPPNVLSCLTQLEDLYMENSFLQW-RIEGLDSQRNNASLAELKYLP 674

Query: 121 KLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICL 180
            L++L + I D   LPRD  F K L+R++ILIG+  ++      S   KLK++  A+I  
Sbjct: 675 NLSTLHLHITDPMILPRDF-FSKKLERFKILIGEGWDWSRKRETSTTMKLKIS--ASIQS 731

Query: 181 NEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMR-GINHRRELKQIFK----QES 235
            EG  + LKR EDL   G       S++    G   +    I +  E++ I        S
Sbjct: 732 EEGIQLLLKRTEDLHLDGLKGVKSVSYELDGQGFPRLKHLHIQNSLEIRYIVDSTMLSPS 791

Query: 236 SNAKDLEKLSIFMCDNLTHL------VPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLV 289
                LE LS+   DNL  L       P + SF NL  L V  C  + N+ +    R L+
Sbjct: 792 IAFPLLESLSL---DNLNKLEKICNSQPVAESFSNLRILKVESCPMLKNLFSLHMERGLL 848

Query: 290 RLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCA 349
           +L  ++I  C ++  IVA+E   G      + I  ++L+ L L  L   TS S   N  +
Sbjct: 849 QLEHISIIDCKIMEVIVAEE--SGGQADEDEAIKLTQLRTLTLEYLPEFTSVSSKSNAAS 906

Query: 350 FKFPSLERLVVNRCPNMKIFSEGELSTP 377
                 E L+ +   N +I S+ EL TP
Sbjct: 907 ISQTRPEPLITDVGSN-EIASDNELGTP 933

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555123|ref|XP_003545887.1| PREDICTED: disease resistance protein At4g27190-like [Glycine max]

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 148/412 (35%), Positives = 223/412 (54%), Gaps = 28/412 (6%)

Query: 6   LPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLN 65
           LP SL LL  L++L+L  C+LGD+ ++  L  L IL+L  S +EEL  EI  LT LRLLN
Sbjct: 534 LPPSLNLLIKLRSLNLR-CKLGDIRMVAKLSNLEILSLEESSIEELPEEITHLTHLRLLN 592

Query: 66  LSKCFELKVIPPNVISSLSRLEELYIGQ-SPIQWGKVEGVDGERRNASLDELNNLSKLTS 124
           L+ C+EL+VIP N+ S+L+ LEELY+G  + I+W +VEG   E +NASL EL NL  LT+
Sbjct: 593 LTDCYELRVIPTNLTSNLTCLEELYMGGCNSIEW-EVEGSRSESKNASLSELQNLHNLTT 651

Query: 125 LEILIQDEKTLPRDLSFFKMLQRYRILIGDSRE-------YDAWDGISRISKLKLTNGAN 177
           LEI I+D   L R   F   L+ Y ILIG+  E       Y    G SR  KL  ++  +
Sbjct: 652 LEISIKDTSVLSRGFQFPAKLETYNILIGNISEWGRSQNWYGEALGPSRTLKLTGSSWTS 711

Query: 178 I----CLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVE-NGMEAMMRGINHRRELKQIFK 232
           I     + +  + +LK ++DL    D E  +   K++  +G + ++  IN RR L+    
Sbjct: 712 ISSLTTVEDLRLAELKGVKDLLYDLDVEG-FPQLKHLHIHGSDELLHIINSRR-LRNPHS 769

Query: 233 QESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLR 292
               N K L   +++  + + H    + SF  L  + V  CHG+ N+L  S AR+L +L 
Sbjct: 770 SAFPNLKSLLLYNLYTMEEICHGPIPTLSFAKLEVIKVRNCHGLDNLLLYSLARNLSQLH 829

Query: 293 QMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKF 352
           +M I  C  + EI+A E+ E +      EIV  EL+ L L  L  L SF C         
Sbjct: 830 EMEINNCRCMKEIIAMEEHEDEKELL--EIVLPELRSLALVELTRLQSF-CLPLTVDMGD 886

Query: 353 PSLERLVVNRCPNMKIFSEGELSTPKLQKVQMSLVDE-KLWAWDRDLNTTIQ 403
           PS++ +       + +F++ ++ TPKL+ +++  +D  K+W     L++  Q
Sbjct: 887 PSIQGI------PLALFNQ-QVVTPKLETLKLYDMDICKIWDDKLPLHSCFQ 931

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574526|ref|XP_002528174.1| Disease resistance protein RFL1, putative [Ricinus communis] gi|223532386|gb|EEF34181.1| Disease resistance protein RFL1, putative [Ricinus communis]

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 151/410 (36%), Positives = 212/410 (51%), Gaps = 48/410 (11%)

Query: 1   MHLLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQ 60
           M   +LP SLG L++L+TL LD C L D+AIIG+LKKL IL    SD+ EL  EIG+L++
Sbjct: 548 MSFSSLPPSLGCLEHLRTLCLDHCLLHDIAIIGELKKLEILTFAHSDIVELPREIGELSR 607

Query: 61  LRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLS 120
           L+LL+LS C +L V P NV+S L  LEELY+  S ++W K+EG+  +  NASLDEL  LS
Sbjct: 608 LKLLDLSHCSKLNVFPANVLSRLCLLEELYMANSFVRW-KIEGLMNQ-SNASLDELVLLS 665

Query: 121 KLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICL 180
            LTSLEI I D + LPRDL F K LQRY+ILIGD  +++  D  SR+ KLKL    +   
Sbjct: 666 HLTSLEIQILDARILPRDL-FTKKLQRYKILIGDEWDWNGHDETSRVLKLKLNTSIH--- 721

Query: 181 NEGHIMQLKRIEDLTSGGDSEALYTSFKNVEN-GMEAMMRGINHRRELKQIFKQESSNAK 239
           +E  + Q     D  S  D+  + +   N+ + G   + R I             S +  
Sbjct: 722 SEYEVNQFLEGTDDLSLADARGVNSILYNLNSEGFPQLKRLIVQNCPEIHCLVNASESVP 781

Query: 240 DLE--------KLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRL 291
            +           ++   +   H      SF  L ++ V  C+ + N+L+ S  R L++L
Sbjct: 782 TVAFPLLKSLLLENLMNLEKFCHGELVGGSFSELRSIKVRSCNELKNLLSFSMVRFLMQL 841

Query: 292 RQMTIKVCVMITEIV----ADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCS--- 344
           ++M +  C  + EI     AD D E D  AA      + L+ L L  L  L SF CS   
Sbjct: 842 QEMEVIDCRNVMEIFKYEGADSDIE-DKAAA-----LTRLRSLTLERLPKLNSF-CSIKE 894

Query: 345 -----------------GNNCA-FKFPSLERLVVNRCPNMKIFSEGELST 376
                            G +   F+ P+LE L+++  P   I+  GELST
Sbjct: 895 PLTIDPGLEEIVSESDYGPSVPLFQVPTLEDLILSSIPCETIW-HGELST 943

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110992|ref|XP_002332999.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834484|gb|EEE72961.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 144/384 (37%), Positives = 200/384 (52%), Gaps = 40/384 (10%)

Query: 14  QNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELK 73
           +NLQTL LD   L D++ IGDLK+L IL+   S++++L  EI QLT+LRLL+LS CFEL+
Sbjct: 563 ENLQTLCLDRSTLDDISAIGDLKRLEILSFFQSNIKQLPREIAQLTKLRLLDLSDCFELE 622

Query: 74  VIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEK 133
           VIPP+V S LS LEELY+  S  QW   EG    + NASL EL NLS LT+ EI IQD +
Sbjct: 623 VIPPDVFSKLSMLEELYMRNSFHQWD-AEG----KNNASLAELENLSHLTNAEIHIQDSQ 677

Query: 134 TLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIED 193
            LP  +  F+ L++YR+ IGD  ++D    + R +KLKL    +   N G  M L R ED
Sbjct: 678 VLPYGI-IFERLKKYRVCIGDDWDWDGAYEMLRTAKLKLNTKID-HRNYGIRMLLNRTED 735

Query: 194 LTSGGDSEALYTSFKNVENGMEAMMRGINHRRELK-----------QIFKQESSNAKD-L 241
           L             + V    E    G  H + L+              +  SSNA   L
Sbjct: 736 L--------YLFEIEGVNIIQELDREGFPHLKHLQLRNSFEIQYIISTMEMVSSNAFPIL 787

Query: 242 EKLSIFMCDNLTHLVPSS---TSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKV 298
           E L ++   +L  +   +    SF  L  + V  C+ + N+ +   AR L +L+++ I  
Sbjct: 788 ESLILYDLSSLKKICHGALRVESFAKLRIIAVEHCNKLTNLFSFFVARGLSQLQKIKIAF 847

Query: 299 CVMITEIVADEDDE-GDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLER 357
           C+ + E+VA+E DE GD     D I F++L  L+L  L  L +F         K  SL R
Sbjct: 848 CMKMEEVVAEESDELGDQNEVVDVIQFTQLYSLSLQYLPHLMNFYSK-----VKPSSLSR 902

Query: 358 L----VVNRCPNMKIFSEGELSTP 377
                 +    + +I SE EL TP
Sbjct: 903 TQPKPSITEARSEEIISEDELRTP 926

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111284|ref|XP_002332949.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834261|gb|EEE72738.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 149/421 (35%), Positives = 229/421 (54%), Gaps = 51/421 (12%)

Query: 1   MHLLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQ 60
           ++L  LPSSL  L+NLQTL LD C L D++I+G+LKKL +L+L  SD+  L  EIG+LT+
Sbjct: 552 VNLSPLPSSLQFLENLQTLCLDGCVLEDISIVGELKKLKVLSLISSDIVCLPREIGKLTR 611

Query: 61  LRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLS 120
           L LL+LS C  L+VI PNV+SSL+RLEELY+G S ++W + EG   +R NA L EL  LS
Sbjct: 612 LLLLDLSNCERLEVISPNVLSSLTRLEELYMGNSFVKW-ETEGSSSQRNNACLSELKRLS 670

Query: 121 KLTSLEILIQDEKTLPRDLSF-FKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANI- 178
            L +L + I D   + +DLSF F+ L+R+RI IGD  ++      SR  KLKL     + 
Sbjct: 671 NLITLHMQITDADNMLKDLSFLFQKLERFRIFIGDGWDWSVKYATSRTLKLKLNTVIQLE 730

Query: 179 --------CLNEGHIMQLKRIEDLTSGGDSEALYTSFK--NVEN--GMEAMMRGINHRRE 226
                      E H+ +LK ++ + +  D E  +   K  +V+N  G++ ++  I  R  
Sbjct: 731 EWVNTLLKSTEELHLQELKGVKSILNDLDGED-FPRLKHLHVQNCPGVQYIINSI--RMG 787

Query: 227 LKQIFKQESSNAKDLEKLSIFMCDNLTHLVPS---STSFQNLTTLTVWGCHGMINVLTSS 283
            +  F        +L+ L +   DNL  +      + S   L  L V  CH + N+ + S
Sbjct: 788 PRTAF-------LNLDSLFLENLDNLEKICHGQLMAESLGKLRILKVESCHRLKNLFSVS 840

Query: 284 TARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSC 343
            AR LVRL ++TI  C ++ E+VA+E +  ++ A  + I F++L+ L L  L   TSF  
Sbjct: 841 MARRLVRLEEITIIDCKIMEEVVAEESE--NDTADGEPIEFAQLRRLTLQCLPQFTSFHS 898

Query: 344 SGNNCAFKFPSLERLVVNRCPNMKIFSEGELST-----------PKLQKVQMSLVD-EKL 391
           +           ++L+ +   + +I +  EL T           P L+ +++S +  EK+
Sbjct: 899 NRR---------QKLLASDVRSKEIVAGNELGTSMSLFNTKILFPNLEDLKLSSIKVEKI 949

Query: 392 W 392
           W
Sbjct: 950 W 950

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204973|emb|CBI34280.3| unnamed protein product [Vitis vinifera]

 Score =  177 bits (450), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 147/406 (36%), Positives = 212/406 (52%), Gaps = 52/406 (12%)

Query: 1   MHLLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQ 60
           MH   LPSSL  L NL+TL LD CELGD+A+IG L KL +L+L+ S +++L  E+ +LT 
Sbjct: 459 MHFTTLPSSLDSLANLRTLRLDRCELGDIALIGKLTKLEVLSLKCSTIQQLPNEMSRLTN 518

Query: 61  LRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLS 120
           LRLL+L+ C +L+VIP N++SSLSRLE LY+     QW      +GE  NA L ELN+LS
Sbjct: 519 LRLLDLNHCQKLEVIPRNILSSLSRLECLYMKSRFTQW----ATEGE-SNACLSELNHLS 573

Query: 121 KLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICL 180
            LT+LEI I D K LP+D+  F+ L RYRI IG       W    R  KL   N  ++ L
Sbjct: 574 HLTTLEIYIPDAKLLPKDI-LFEKLTRYRIFIGTR----GWLRTKRALKLWKVN-RSLHL 627

Query: 181 NEGHIMQLKRIEDLTS---GGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSN 237
            +G    L+R E+L      G    L+ S  + E+ +E     +    E++ I   +S N
Sbjct: 628 GDGMSKLLERSEELGFSQLSGTKYVLHPS--DRESFLELKHLEVGDSPEIQYIM--DSKN 683

Query: 238 AKDLEK-----LSIFMCDNLTHL-------VPSSTSFQNLTTLTVWGCHGMINVLTSSTA 285
            + L+      L   +  NL +        +P   SF NL TL V  C  +  +L  STA
Sbjct: 684 QQLLQHGAFPLLKSLILQNLKNFEEVWHGPIPIG-SFGNLKTLKVRFCPKLKFLLLLSTA 742

Query: 286 RSLVRLRQMTIKVCVMITEIVADEDD---EGDNYAAQDEIVFSELKELNLSNLQSLTSF- 341
           R L +L +MTI+ C  + +I+A E +   + D +A  +  +F +L+ L L +L  L +F 
Sbjct: 743 RGLSQLEEMTIEYCDAMQQIIAYERESEIKEDGHAGTNLQLFPKLRTLILHDLPQLINFS 802

Query: 342 -------------SCSGNNCAF----KFPSLERLVVNRCPNMKIFS 370
                        +    N  F     FP  E+L++   P + + S
Sbjct: 803 SELETTSSTSLSTNARSENSFFSHKVSFPKTEKLMLYNVPKLNLSS 848

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143316|ref|XP_002336027.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222838884|gb|EEE77235.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  177 bits (450), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 148/422 (35%), Positives = 229/422 (54%), Gaps = 53/422 (12%)

Query: 1   MHLLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQ 60
           ++L  LPSSL  L+NLQTL LD C L D++I+G+LKKL +L+L GSD+  L  EIG+LT+
Sbjct: 552 VNLSPLPSSLQFLENLQTLCLDFCVLEDISIVGELKKLKVLSLMGSDIVCLPREIGKLTR 611

Query: 61  LRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLS 120
           L LL+LS C  L+VI PNV+SSL+RLEELY+G S ++W + EG   ER +A L EL  L+
Sbjct: 612 LLLLDLSNCERLEVISPNVLSSLTRLEELYMGNSFLKW-EAEGPSSERNSACLSELKLLA 670

Query: 121 KLTSLEILIQDEKTLPRDLSF-FKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANI- 178
            L +L++ I D   +P+DL   F+ L+R+RI IGD  ++      SR  KLKL     + 
Sbjct: 671 NLITLDMQITDADHMPKDLFLCFQKLERFRIFIGDGWDWSVKYATSRTLKLKLNTVIQLE 730

Query: 179 --------CLNEGHIMQLKRIEDLTSGGDSEALYTSFKN--VEN--GMEAMMRGINHRRE 226
                      E H+ +L  ++ + +  D E  +   K+  V+N  G++ ++  +  R  
Sbjct: 731 ERVNTLLKITEELHLQELNGVKSILNDLDEEG-FCQLKDLHVQNCPGVQYIINSM--RMG 787

Query: 227 LKQIFKQESS----NAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTS 282
            +  F    S    N  +LEK        + H    + S  NL  L V  CH + N+ + 
Sbjct: 788 PRTAFLNLDSLFLENLDNLEK--------ICHGQLMAESLGNLRILKVESCHRLKNLFSV 839

Query: 283 STARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFS 342
           S AR +VRL ++TI  C ++ E+VA+E +  ++ A  + I F++L+ L L  L   TSF 
Sbjct: 840 SIARRVVRLEEITIIDCKIMEEVVAEESE--NDTADGEPIEFTQLRRLTLQCLPQFTSFH 897

Query: 343 CSGNNCAFKFPSLERLVVNRCPNMKIFSEGELST-----------PKLQKVQMSLVD-EK 390
            +           ++L+ +   + +I +  EL T           PKL+ + +S +  EK
Sbjct: 898 SNRR---------QKLLASDVRSKEIVAGNELGTSMSLFNTKILFPKLEDLMLSSIKVEK 948

Query: 391 LW 392
           +W
Sbjct: 949 IW 950

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083434|ref|XP_002307025.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222856474|gb|EEE94021.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 141/417 (33%), Positives = 222/417 (53%), Gaps = 40/417 (9%)

Query: 3   LLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLR 62
           L++LPS L  L+NL+TL L    LG++A IG+LKKL IL+   S+++ L  +IGQLT+LR
Sbjct: 563 LVSLPSPLHFLKNLRTLCLHQSSLGEIADIGELKKLEILSFAKSNIKHLPRQIGQLTKLR 622

Query: 63  LLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKL 122
           +L+LS CFEL VIPPN+ S+LS LEEL +G S   W   EG D    NASL EL++L  L
Sbjct: 623 MLDLSDCFELDVIPPNIFSNLSMLEELCMGNSFHHWA-TEGED----NASLVELDHLPHL 677

Query: 123 TSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGIS---RISKLKLTNGANIC 179
           T+++I + D   + + +   K L+R+RI IGD  +   WDG+    R  KLKL   A+  
Sbjct: 678 TNVDIHVLDSHVMSKGM-LSKRLERFRIFIGDVWD---WDGVYQSLRTLKLKLNTSAS-N 732

Query: 180 LNEGHIMQLKRIEDLT----SGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQES 235
           L  G +M LKR +DL      G ++     S  + E  ++     +++  +++ I    S
Sbjct: 733 LEHGVLMLLKRTQDLYLLELKGVNN---VVSELDTEGFLQLRHLHLHNSSDIQYIINTSS 789

Query: 236 SNAKD----LEKLSIF---MCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSL 288
                    LE L ++     + L H + ++ SF+ LT + V  C  + ++   S AR L
Sbjct: 790 EFPSHVFPVLESLFLYNLVSLEKLCHGILTAESFRKLTIIEVGNCVKLKHLFPFSVARGL 849

Query: 289 VRLRQMTIKVCVMITEIVADEDDEGDNYAAQ-DEIVFSELKELNLSNLQSLTSFSCSGNN 347
            +L+ + I  C+ + E+VA+E DE ++   + D + F++L  L+L  L  L +F      
Sbjct: 850 SQLQTINISFCLTMEEVVAEEGDEFEDSCTEIDVMEFNQLSSLSLQCLPHLKNFCSREKT 909

Query: 348 CAFKFPSLERLVVNRCPNMKIFSEGE-----------LSTPKLQKVQMSLVD-EKLW 392
                  L  +  +     K  SE E           +  PKL+K+++  ++ EK+W
Sbjct: 910 SRLCQAQLNPVATSVGLQSKEISEDEPRNPLQLFCEKILIPKLKKLELVSINVEKIW 966

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	411
TAIR|locus:2131689	919	AT4G27220 [Arabidopsis thalian	0.802	0.359	0.264	1.1e-09
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.425	0.122	0.266	7.3e-06
TAIR|locus:2136447	985	AT4G27190 [Arabidopsis thalian	0.313	0.130	0.293	2.6e-05
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.683	0.309	0.246	0.00012
TAIR|locus:2203881	893	AT1G62630 [Arabidopsis thalian	0.579	0.266	0.252	0.00071
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.557	0.192	0.262	0.00077
WB|WBGene00022129	542	lron-11 [Caenorhabditis elegan	0.515	0.391	0.278	0.00079

TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 95/359 (26%), Positives = 155/359 (43%)

Query:    23 DCE-LGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVIS 81
             +C+ L ++  +  L KL  L L  S + EL   +  L+ LR + +S  ++L+ IP   I 
Sbjct:   550 NCKKLRNLPSLESLVKLQFLDLHESAIRELPRGLEALSSLRYICVSNTYQLQSIPAGTIL 609

Query:    82 SLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDL-S 140
              LS LE L +  S   WG ++G + E + A+LDE+  L  L  L I + D  +   +  S
Sbjct:   610 QLSSLEVLDMAGSAYSWG-IKGEEREGQ-ATLDEVTCLPHLQFLAIKLLDVLSFSYEFDS 667

Query:   141 FFKMLQRYRILIGDSREYD---AWDGISRISKLKLTNGANICLNEGHI--MQLKRIEDLT 195
               K L +++ L    R        +G   IS + ++N A+I     H+  + L   E L 
Sbjct:   668 LTKRLTKFQFLFSPIRSVSPPGTGEGCLAISDVNVSN-ASIGWLLQHVTSLDLNYCEGLN 726

Query:   196 SGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLT-H 254
               G  E L T  K+    M+A+         L    + +     +LE+LS+   DN+   
Sbjct:   727 --GMFENLVTKSKSSFVAMKALSIHYFPSLSLASGCESQLDLFPNLEELSL---DNVNLE 781

Query:   255 LVPSSTSF-----QNLTTLTVWGCHGMINVLTSST-ARSLVRLRQMTIKVCVMITEIVAD 308
              +     F     Q L  L V GC  +  + +    A +L  L+++ +  C+ + E+   
Sbjct:   782 SIGELNGFLGMRLQKLKLLQVSGCRQLKRLFSDQILAGTLPNLQEIKVVSCLRLEELFNF 841

Query:   309 EDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMK 367
                  D + A  E +  +L  + L  L  L S  C   N      SLE L V  C ++K
Sbjct:   842 SSVPVD-FCA--ESLLPKLTVIKLKYLPQLRSL-C---NDRVVLESLEHLEVESCESLK 893

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
 Identities = 53/199 (26%), Positives = 92/199 (46%)

Query:   200 SEALYTS-FKNVENGMEAM-MRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVP 257
             SEA+  S + + E  ME + +  I+H  EL Q          +L+ L I  CD LT L  
Sbjct:  1060 SEAIKPSQYDDDETDMEYLKVTDISHLMELPQ----------NLQSLHIDSCDGLTSLPE 1109

Query:   258 SST-SFQNLTTLTVWGCHGMINVLTS---STARSL-VR-LRQMTIKVCVMITEIVADED- 310
             + T S+ NL  L +  CH + +   S   +T ++L +R  +++     +  T   +  + 
Sbjct:  1110 NLTESYPNLHELLIIACHSLESFPGSHPPTTLKTLYIRDCKKLNFTESLQPTRSYSQLEY 1169

Query:   311 ----DEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNM 366
                     N       +F +L+ L++ + +S  +FS        +  +LE L +  CPN+
Sbjct:  1170 LFIGSSCSNLVNFPLSLFPKLRSLSIRDCESFKTFSIHAGLGDDRI-ALESLEIRDCPNL 1228

Query:   367 KIFSEGELSTPKLQKVQMS 385
             + F +G L TPKL  + +S
Sbjct:  1229 ETFPQGGLPTPKLSSMLLS 1247

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2136447 AT4G27190 [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
 Identities = 39/133 (29%), Positives = 74/133 (55%)

Query:    23 DC-ELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVIS 81
             DC +L  +  +  L KL +L L G+ + E    + +L + R L+LS+   L+ IP  V+S
Sbjct:   583 DCFKLVKLPSLETLAKLELLDLCGTHILEFPRGLEELKRFRHLDLSRTLHLESIPARVVS 642

Query:    82 SLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEK-TLPRDLS 140
              LS LE L +  S  +W  V+G + ++  A+++E+  L +L  L I +      L +  +
Sbjct:   643 RLSSLETLDMTSSHYRWS-VQG-ETQKGQATVEEIGCLQRLQVLSIRLHSSPFLLNKRNT 700

Query:   141 FFKMLQRYRILIG 153
             + K L+++++++G
Sbjct:   701 WIKRLKKFQLVVG 713

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 0.00012, P = 0.00012
 Identities = 79/320 (24%), Positives = 134/320 (41%)

Query:   104 VDGERRNASLDELNNLSKLTSLEIL-IQDEKTLPRD----LSFFKMLQRYRILIG----D 154
             + G + +    EL NL KL  L++   Q  +T+PRD    LS  ++L  Y    G     
Sbjct:   588 MSGTKISVLPQELGNLRKLKHLDLQRTQFLQTIPRDAICWLSKLEVLNLYYSYAGWELQS 647

Query:   155 SREYDAWD-GISRISKLK-LTNGANICLNEGHIMQL-------KRIEDLTSGGDSEALYT 205
               E +A + G + +  L+ LT      L+   +  L       K I+ L     +E LY 
Sbjct:   648 FGEDEAEELGFADLEYLENLTTLGITVLSLETLKTLFEFGALHKHIQHLHVEECNELLYF 707

Query:   206 SFKNVEN-GMEAMMRGINHRRELKQIFKQ---ESSNAKDLEKLSIFMCDNLTHLVPSSTS 261
             +  ++ N G       I    +L+ +      E+     LE L++    NLT +  +S S
Sbjct:   708 NLPSLTNHGRNLRRLSIKSCHDLEYLVTPADFENDWLPSLEVLTLHSLHNLTRVWGNSVS 767

Query:   262 ---FQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAA 318
                 +N+  + +  C+ + NV   S  + L +L  + +  C  I E++++ +      + 
Sbjct:   768 QDCLRNIRCINISHCNKLKNV---SWVQKLPKLEVIELFDCREIEELISEHESP----SV 820

Query:   319 QDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPK 378
             +D  +F  LK L   +L  L S   S     F F  +E LV+  CP +K     E  T  
Sbjct:   821 EDPTLFPSLKTLRTRDLPELNSILPS----RFSFQKVETLVITNCPRVKKLPFQERRTQ- 875

Query:   379 LQKVQMSLVDEKLW-AWDRD 397
                +     +EK W A ++D
Sbjct:   876 -MNLPTVYCEEKWWKALEKD 894

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2203881 AT1G62630 [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 0.00071, P = 0.00071
 Identities = 70/277 (25%), Positives = 124/277 (44%)

Query:   110 NASLDEL-NNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREY----DAWDGI 164
             N SL EL   +S L SL+ L      + R LS  K +Q  + +I  + E+    ++ DGI
Sbjct:   580 NQSLFELPEEISNLVSLKYLNLSHTGI-RHLS--KGIQELKKIIHLNLEHTSKLESIDGI 636

Query:   165 SRISKLKLTN--GANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGIN 222
             S +  LK+    G+ +  +   + +L+ +E L      E L T+         +  R + 
Sbjct:   637 SSLHNLKVLKLYGSRLPWDLNTVKELETLEHL------EILTTTIDPRAKQFLSSHR-LM 689

Query:   223 HRRELKQIFKQES-SNAKDLEKLSI---------FMCDNLTHL-VPSSTSFQNLTTLTVW 271
              R  L QIF     S  + LE LS+          MC +++ + +    +F +L  +T++
Sbjct:   690 SRSRLLQIFGSNIFSPDRQLESLSVSTDKLREFEIMCCSISEIKMGGICNFLSLVDVTIY 749

Query:   272 GCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDD-EGDNYAAQDEIVFSELKEL 330
              C G+  +     A    +LR +++     + +I+ +E   EG++      + F ELK L
Sbjct:   750 NCEGLRELTFLIFAP---KLRSLSVVDAKDLEDIINEEKACEGEDSGI---VPFPELKYL 803

Query:   331 NLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMK 367
             NL +L  L +           F  LE++ +  CPN++
Sbjct:   804 NLDDLPKLKNIY----RRPLPFLCLEKITIGECPNLR 836

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 0.00077, P = 0.00077
 Identities = 67/255 (26%), Positives = 112/255 (43%)

Query:    32 IGDLKKLVILAL-RGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELY 90
             IG+L  L  L L R S + +L    G +T L+ LNLS C  L  IP + I ++  L+++Y
Sbjct:   724 IGNLTNLKKLFLNRCSSLVKLPSSFGNVTSLKELNLSGCSSLLEIPSS-IGNIVNLKKVY 782

Query:    91 I-GQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR--DLSFFKMLQR 147
               G S +    V+       N +L EL+ L+  +SL         L R  DL+    L  
Sbjct:   783 ADGCSSL----VQLPSSIGNNTNLKELHLLN-CSSLMECPSSMLNLTRLEDLNLSGCLSL 837

Query:   148 YRI-LIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALY-- 204
              ++  IG+         +  +  L L++ +++      I     ++ L   G S  L   
Sbjct:   838 VKLPSIGN---------VINLQSLYLSDCSSLMELPFTIENATNLDTLYLDGCSNLLELP 888

Query:   205 TSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQN 264
             +S  N+ N     + G +  +EL  + +    NA +L+ LS+  C +L  L  S     N
Sbjct:   889 SSIWNITNLQSLYLNGCSSLKELPSLVE----NAINLQSLSLMKCSSLVELPSSIWRISN 944

Query:   265 LTTLTVWGCHGMINV 279
             L+ L V  C  ++ +
Sbjct:   945 LSYLDVSNCSSLLEL 959

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

WB|WBGene00022129 lron-11 [Caenorhabditis elegans (taxid:6239)]

 Score = 117 (46.2 bits), Expect = 0.00079, P = 0.00079
 Identities = 65/233 (27%), Positives = 102/233 (43%)

Query:    31 IIGDLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEEL 89
             +   LK L  L +  +D++ L  E    L+QL+ L+++    L  +PP+V+  LS L  L
Sbjct:   113 VFSKLKNLKTLIISSNDVQ-LGPECFAGLSQLQTLSIADN-RLSFLPPSVLKPLSGLRNL 170

Query:    90 YIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEI-LIQDEKTLPRDLSFFKMLQRY 148
              +  + +       ++      +L    NL  L+SLE  +   +K L       K L   
Sbjct:   171 DLSANKLLSMPASVMNNLGGLETLKLKQNL--LSSLETGMFLSQKEL-------KHLDVS 221

Query:   149 RILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFK 208
               LIGD  E  A  G+ ++  L LTN   + L  G+   L  ++ L     S  L+ S +
Sbjct:   222 ENLIGDIEE-GALYGLEKLETLNLTNNQLVRL-PGNTWSLPALKTLDL---SSNLFVSLE 276

Query:   209 NVE-NGMEAMMR-GINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSS 259
                 +G+ A+    I+H R LK I          L  LSI     LTH+ PS+
Sbjct:   277 TASFDGLPALQYLNISHSRNLKTIQMATFVQLSSLHWLSI-SSSALTHIHPSA 328


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.134   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      411       392   0.00095  117 3  11 22  0.40    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  236 KB (2128 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  33.99u 0.13s 34.12t   Elapsed:  00:00:02
  Total cpu time:  33.99u 0.13s 34.12t   Elapsed:  00:00:02
  Start:  Sat May 11 13:05:08 2013   End:  Sat May 11 13:05:10 2013

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	411
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.92
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.88
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.85
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.8
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.77
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.76
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.74
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.62
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.59
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.59
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.53
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.52
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.51
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.47
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.45
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.4
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.39
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.35
KOG4341	483	consensus F-box protein containing LRR [General fu	99.33
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.2
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.17
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.13
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.06
KOG4341	483	consensus F-box protein containing LRR [General fu	98.98
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.8
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.78
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.77
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.73
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.72
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.62
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.62
PLN03150	623	hypothetical protein; Provisional	98.57
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.54
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.52
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.49
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.46
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.42
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.42
PLN03150	623	hypothetical protein; Provisional	98.35
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.24
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.22
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.14
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.1
PRK15386	426	type III secretion protein GogB; Provisional	98.07
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.06
PRK15386	426	type III secretion protein GogB; Provisional	97.95
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.87
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.86
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.71
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.7
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.7
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.67
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.61
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.6
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.53
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.47
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.46
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.42
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.28
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.14
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.01
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.78
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.76
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.62
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.6
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.3
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.71
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.29
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.05
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.78
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.63
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.38
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	92.17
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.34
smart00370	26	LRR Leucine-rich repeats, outliers.	90.34
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.46
smart00370	26	LRR Leucine-rich repeats, outliers.	88.46
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	87.85
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	80.18

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.92  E-value=1.4e-24  Score=231.06  Aligned_cols=57  Identities=19%  Similarity=0.122  Sum_probs=33.8

Q ss_pred             CCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCCCceEEEEe
Q 038576          325 SELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMS  385 (411)
Q Consensus       325 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~  385 (411)
                      ++|+.|+++++.....+|.   .. ..+++|+.|++++|.-...+|..+..+++|++|+++
T Consensus       475 ~~L~~L~ls~n~l~~~~~~---~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  531 (968)
T PLN00113        475 KRLENLDLSRNQFSGAVPR---KL-GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLS  531 (968)
T ss_pred             ccceEEECcCCccCCccCh---hh-hhhhccCEEECcCCcceeeCChHHcCccCCCEEECC
Confidence            4556666665532222211   11 235777778887765555677666677888888886

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.92  E-value=3.4e-24  Score=228.02  Aligned_cols=343  Identities=19%  Similarity=0.150  Sum_probs=204.3

Q ss_pred             CCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccc-cchHHhcCCCCCCEEecCCCCCccccCccccc
Q 038576            5 ALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDME-ELAGEIGQLTQLRLLNLSKCFELKVIPPNVIS   81 (411)
Q Consensus         5 ~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~   81 (411)
                      .+|..++++.+|++|++++|.+..  |..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. +.
T Consensus       203 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~  281 (968)
T PLN00113        203 QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IF  281 (968)
T ss_pred             cCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-Hh
Confidence            468888999999999999998775  788889999999999999887 67888999999999999986444556665 78


Q ss_pred             CCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccC-CcCCcccccCCCCcEEEEEecCCc-ccc
Q 038576           82 SLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDE-KTLPRDLSFFKMLQRYRILIGDSR-EYD  159 (411)
Q Consensus        82 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~l~~~~~L~~L~i~~~~~~-~~~  159 (411)
                      .+++|++|++++|.+..            ..+..+.++++|+.|++++|.. ..+|..+..+++|+.|.+..+... ..|
T Consensus       282 ~l~~L~~L~Ls~n~l~~------------~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p  349 (968)
T PLN00113        282 SLQKLISLDLSDNSLSG------------EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP  349 (968)
T ss_pred             hccCcCEEECcCCeecc------------CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC
Confidence            88999999998888765            3335666677777777776663 345555666777777777655433 223


Q ss_pred             CcC-CccceeEEEecCCcccccccccccccccchhcccCCCc-----cccccccchhhhchHhhhcccccccc-------
Q 038576          160 AWD-GISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDS-----EALYTSFKNVENGMEAMMRGINHRRE-------  226 (411)
Q Consensus       160 ~~~-~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~L~~L~~~~~~~l~~~~~-------  226 (411)
                      .+. ...+++.|++..+.........+..+..+..+....+.     ...+..+++|+.|      .+.++.-       
T Consensus       350 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L------~L~~n~l~~~~p~~  423 (968)
T PLN00113        350 KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV------RLQDNSFSGELPSE  423 (968)
T ss_pred             hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEE------ECcCCEeeeECChh
Confidence            222 24555555554432211111111111111111110000     0012234444444      4444331       


Q ss_pred             ----------------ccccccccccCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhcccc
Q 038576          227 ----------------LKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVR  290 (411)
Q Consensus       227 ----------------l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~  290 (411)
                                      +..........+++|+.|++++|......+.... .++|+.|++++|...... + ..+..+++
T Consensus       424 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~~~L~~L~ls~n~l~~~~-~-~~~~~l~~  500 (968)
T PLN00113        424 FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRLENLDLSRNQFSGAV-P-RKLGSLSE  500 (968)
T ss_pred             HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-cccceEEECcCCccCCcc-C-hhhhhhhc
Confidence                            1211111223455666666665543333332222 456666666666443332 2 13456677


Q ss_pred             ccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCcccc
Q 038576          291 LRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFS  370 (411)
Q Consensus       291 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p  370 (411)
                      |+.|++++|.-...++..            +..+++|+.|+++++.-...+|..-    ..+++|++|++++|.-...+|
T Consensus       501 L~~L~Ls~N~l~~~~p~~------------~~~l~~L~~L~Ls~N~l~~~~p~~~----~~l~~L~~L~Ls~N~l~~~~p  564 (968)
T PLN00113        501 LMQLKLSENKLSGEIPDE------------LSSCKKLVSLDLSHNQLSGQIPASF----SEMPVLSQLDLSQNQLSGEIP  564 (968)
T ss_pred             cCEEECcCCcceeeCChH------------HcCccCCCEEECCCCcccccCChhH----hCcccCCEEECCCCcccccCC
Confidence            777777776533333332            2347888888888875333332111    235888888888876655788


Q ss_pred             CCCCCCCCceEEEEe
Q 038576          371 EGELSTPKLQKVQMS  385 (411)
Q Consensus       371 ~~~~~~~~L~~l~l~  385 (411)
                      ..+..+++|+.++++
T Consensus       565 ~~l~~l~~L~~l~ls  579 (968)
T PLN00113        565 KNLGNVESLVQVNIS  579 (968)
T ss_pred             hhHhcCcccCEEecc
Confidence            777778888888886

>PLN03210 Resistant to P

Probab=99.90  E-value=1.2e-22  Score=217.23  Aligned_cols=315  Identities=22%  Similarity=0.256  Sum_probs=165.9

Q ss_pred             CChhhhcc-ccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCC
Q 038576            6 LPSSLGLL-QNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSL   83 (411)
Q Consensus         6 lp~~l~~l-~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L   83 (411)
                      +|..+..+ .+||.|++.++.++. |..+ ...+|+.|+++++.+..+|..+..+++|++|++++|+.++.+|.  ++.+
T Consensus       580 lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l  656 (1153)
T PLN03210        580 LPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMA  656 (1153)
T ss_pred             cCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccC
Confidence            34444443 346666666665555 5444 35677777777777777777777777777777777666777764  6677


Q ss_pred             CCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeecc-CCcCCcccccCCCCcEEEEEecCCc-cccCc
Q 038576           84 SRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQD-EKTLPRDLSFFKMLQRYRILIGDSR-EYDAW  161 (411)
Q Consensus        84 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~l~~~~~L~~L~i~~~~~~-~~~~~  161 (411)
                      ++|++|++++|....            ..+..+.++++|+.|++++|. ...+|..+ .+++|+.|.+..+... .+|+.
T Consensus       657 ~~Le~L~L~~c~~L~------------~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~  723 (1153)
T PLN03210        657 TNLETLKLSDCSSLV------------ELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI  723 (1153)
T ss_pred             CcccEEEecCCCCcc------------ccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc
Confidence            777777777776444            334667777777777777764 55566554 5677777777654321 22221


Q ss_pred             CCccceeEEEecCCcccccccccccccccchhcccC----------CCccc--cccccchhhhchHhhhccccccccccc
Q 038576          162 DGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSG----------GDSEA--LYTSFKNVENGMEAMMRGINHRRELKQ  229 (411)
Q Consensus       162 ~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~--~~~~~~~L~~L~~~~~~~l~~~~~l~~  229 (411)
                        ..++..|++.++....+...  ..++.+..+...          .....  ....+++|++|      .+.+++.+..
T Consensus       724 --~~nL~~L~L~~n~i~~lP~~--~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L------~Ls~n~~l~~  793 (1153)
T PLN03210        724 --STNISWLDLDETAIEEFPSN--LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL------FLSDIPSLVE  793 (1153)
T ss_pred             --cCCcCeeecCCCcccccccc--ccccccccccccccchhhccccccccchhhhhccccchhe------eCCCCCCccc
Confidence              33455555443221111100  001111111000          00000  01122455555      5555544444


Q ss_pred             cccccccCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEccccccccccccc
Q 038576          230 IFKQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADE  309 (411)
Q Consensus       230 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~  309 (411)
                      ++.. ...+++|+.|++++|..+..++.... +++|+.|++++|..++.++.     ..++|+.|+++++. +++++.. 
T Consensus       794 lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~~~-L~sL~~L~Ls~c~~L~~~p~-----~~~nL~~L~Ls~n~-i~~iP~s-  864 (1153)
T PLN03210        794 LPSS-IQNLHKLEHLEIENCINLETLPTGIN-LESLESLDLSGCSRLRTFPD-----ISTNISDLNLSRTG-IEEVPWW-  864 (1153)
T ss_pred             cChh-hhCCCCCCEEECCCCCCcCeeCCCCC-ccccCEEECCCCCccccccc-----cccccCEeECCCCC-CccChHH-
Confidence            4332 34455555555555555544433332 55555555555555544321     12455555555532 4444332 


Q ss_pred             CCCCCCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCcccc
Q 038576          310 DDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFS  370 (411)
Q Consensus       310 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p  370 (411)
                                 ...+++|+.|++++|++++.+|....    .+++|+.+++++|.++..++
T Consensus       865 -----------i~~l~~L~~L~L~~C~~L~~l~~~~~----~L~~L~~L~l~~C~~L~~~~  910 (1153)
T PLN03210        865 -----------IEKFSNLSFLDMNGCNNLQRVSLNIS----KLKHLETVDFSDCGALTEAS  910 (1153)
T ss_pred             -----------HhcCCCCCEEECCCCCCcCccCcccc----cccCCCeeecCCCccccccc
Confidence                       22366677777777776666643322    24666666777776666543

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.90  E-value=1.3e-22  Score=216.94  Aligned_cols=315  Identities=20%  Similarity=0.274  Sum_probs=208.1

Q ss_pred             CCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCC-ccccchHHhcCCCCCCEEecCCCCCccccCcccc
Q 038576            3 LLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGS-DMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVI   80 (411)
Q Consensus         3 l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~-~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l   80 (411)
                      ++.+|..+ ...+|+.|++.++.+.. +..+..+++|++|+++++ .+..+|. ++.+++|++|++++|..+..+|.. +
T Consensus       601 l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i  677 (1153)
T PLN03210        601 LRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-I  677 (1153)
T ss_pred             CCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-h
Confidence            45666665 45778888888877777 677777778888888776 4556663 677778888888877777777766 7


Q ss_pred             cCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeecc-CCcCCcccccCCCCcEEEEEecCCcccc
Q 038576           81 SSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQD-EKTLPRDLSFFKMLQRYRILIGDSREYD  159 (411)
Q Consensus        81 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~l~~~~~L~~L~i~~~~~~~~~  159 (411)
                      +.+++|++|++++|.... .+|           ..+ ++++|+.|++++|. ...+|.   ...+|+.|.+..+....+|
T Consensus       678 ~~L~~L~~L~L~~c~~L~-~Lp-----------~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP  741 (1153)
T PLN03210        678 QYLNKLEDLDMSRCENLE-ILP-----------TGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFP  741 (1153)
T ss_pred             hccCCCCEEeCCCCCCcC-ccC-----------CcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccccc
Confidence            777888888887775443 222           222 56677777777765 333332   2356667776655555555


Q ss_pred             CcCCccceeEEEecCCccc------------------ccccccccccccchhcccCCCccccccccchhhhchHhhhccc
Q 038576          160 AWDGISRISKLKLTNGANI------------------CLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGI  221 (411)
Q Consensus       160 ~~~~~~~l~~L~~~~~~~~------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l  221 (411)
                      ......++..|.+..+...                  .++...+.++..+..+      ...++++++|+.|      .+
T Consensus       742 ~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l------P~si~~L~~L~~L------~L  809 (1153)
T PLN03210        742 SNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL------PSSIQNLHKLEHL------EI  809 (1153)
T ss_pred             ccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcccc------ChhhhCCCCCCEE------EC
Confidence            4433444444444321110                  0111111111111111      1134578999999      99


Q ss_pred             cccccccccccccccCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEccccc
Q 038576          222 NHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVM  301 (411)
Q Consensus       222 ~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~  301 (411)
                      .+|..++.++...  .+++|++|++++|..+..++..   .++|+.|+++++ .++.++.  .+..+++|+.|++.+|++
T Consensus       810 s~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n-~i~~iP~--si~~l~~L~~L~L~~C~~  881 (1153)
T PLN03210        810 ENCINLETLPTGI--NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRT-GIEEVPW--WIEKFSNLSFLDMNGCNN  881 (1153)
T ss_pred             CCCCCcCeeCCCC--CccccCEEECCCCCcccccccc---ccccCEeECCCC-CCccChH--HHhcCCCCCEEECCCCCC
Confidence            9999888877643  7899999999999888765543   578999999886 5666643  468899999999999999


Q ss_pred             ccccccccCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCc---------ccccCCCcceEeecCCCCCcc
Q 038576          302 ITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNN---------CAFKFPSLERLVVNRCPNMKI  368 (411)
Q Consensus       302 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~---------~~~~~~~L~~L~i~~C~~l~~  368 (411)
                      ++.++....            .+++|+.+++++|++++.++.....         ....+|+...+.+.+|.++..
T Consensus       882 L~~l~~~~~------------~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~  945 (1153)
T PLN03210        882 LQRVSLNIS------------KLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQ  945 (1153)
T ss_pred             cCccCcccc------------cccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCc
Confidence            998876443            4899999999999999877332210         001245556667788877764

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.88  E-value=5.9e-24  Score=197.61  Aligned_cols=339  Identities=18%  Similarity=0.232  Sum_probs=232.8

Q ss_pred             hhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccch-HHhcCCCCCCEEecCCCCCccccCcccccCCCCcc
Q 038576           10 LGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELA-GEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLE   87 (411)
Q Consensus        10 l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~   87 (411)
                      |.++.+|+.+++..|.++. |...+...+|+.|+|.+|.|..+. ..+..++.||.|||+. +.+..+|...+.+=.+++
T Consensus        98 f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr-N~is~i~~~sfp~~~ni~  176 (873)
T KOG4194|consen   98 FYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR-NLISEIPKPSFPAKVNIK  176 (873)
T ss_pred             HhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh-chhhcccCCCCCCCCCce
Confidence            4455555555555555555 333333344555555555555443 2355566666666666 566666655455566677


Q ss_pred             EEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCccc-ccCCCCcEEEEEecCCcc--ccCcCCc
Q 038576           88 ELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDL-SFFKMLQRYRILIGDSRE--YDAWDGI  164 (411)
Q Consensus        88 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~i~~~~~~~--~~~~~~~  164 (411)
                      +|++++|.|+.            .....|..+.+|.+|.++.|++..+|... ..+++|+.|++..+....  +-.|.++
T Consensus       177 ~L~La~N~It~------------l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL  244 (873)
T KOG4194|consen  177 KLNLASNRITT------------LETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGL  244 (873)
T ss_pred             EEeeccccccc------------cccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCc
Confidence            77777776654            33467777888899999999988888754 458999999887665432  3445557


Q ss_pred             cceeEEEecCCcccccccccccccccchhcccCCCcc-----ccccccchhhhchHhhhccccccccccccccccccCCC
Q 038576          165 SRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSE-----ALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAK  239 (411)
Q Consensus       165 ~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~  239 (411)
                      .+++.|.+..+....+.+|.+-++.+++.++-+.+..     ..+.++..|+.|      +++.+. ++.+......-++
T Consensus       245 ~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L------~lS~Na-I~rih~d~Wsftq  317 (873)
T KOG4194|consen  245 PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQL------DLSYNA-IQRIHIDSWSFTQ  317 (873)
T ss_pred             hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhh------ccchhh-hheeecchhhhcc
Confidence            7888888888777888899888888888887554433     256678899999      988865 6666665666789


Q ss_pred             CCcEEEecCCcCCccCCCC-CCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccC
Q 038576          240 DLEKLSIFMCDNLTHLVPS-STSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAA  318 (411)
Q Consensus       240 ~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~  318 (411)
                      +|+.|++++ +.+..+.+. ...+..|+.|.++++. +..+ ....+..+.+|+.|++.++. +...+++...       
T Consensus       318 kL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l-~e~af~~lssL~~LdLr~N~-ls~~IEDaa~-------  386 (873)
T KOG4194|consen  318 KLKELDLSS-NRITRLDEGSFRVLSQLEELNLSHNS-IDHL-AEGAFVGLSSLHKLDLRSNE-LSWCIEDAAV-------  386 (873)
T ss_pred             cceeEeccc-cccccCChhHHHHHHHhhhhcccccc-hHHH-HhhHHHHhhhhhhhcCcCCe-EEEEEecchh-------
Confidence            999999997 555444432 2336788999998764 5554 33456788999999999865 5555444333       


Q ss_pred             ccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCCCceEEEEe
Q 038576          319 QDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMS  385 (411)
Q Consensus       319 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~  385 (411)
                       .+.++++|+.|.+.+ +++++++  ..++ .++++||.|++.+ +.+.++....+..-.|++|.++
T Consensus       387 -~f~gl~~LrkL~l~g-Nqlk~I~--krAf-sgl~~LE~LdL~~-NaiaSIq~nAFe~m~Lk~Lv~n  447 (873)
T KOG4194|consen  387 -AFNGLPSLRKLRLTG-NQLKSIP--KRAF-SGLEALEHLDLGD-NAIASIQPNAFEPMELKELVMN  447 (873)
T ss_pred             -hhccchhhhheeecC-ceeeecc--hhhh-ccCcccceecCCC-Ccceeecccccccchhhhhhhc
Confidence             566799999999999 5799983  4444 6789999999998 4577665544444499999883

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.85  E-value=3.6e-22  Score=185.83  Aligned_cols=334  Identities=15%  Similarity=0.190  Sum_probs=201.5

Q ss_pred             CcEEEecCCcCCC--CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecc
Q 038576           16 LQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQ   93 (411)
Q Consensus        16 L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~   93 (411)
                      .+.|++++|.+.+  +..|.++++|+.+.+..|.++.+|...+...+|+.|+|.+ +.+.++....++.++.|+.||++.
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~-N~I~sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRH-NLISSVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeec-cccccccHHHHHhHhhhhhhhhhh
Confidence            4557777777666  5566677777777777777777776666666677777777 566666655566777777777777


Q ss_pred             cccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc-ccccCCCCcEEEEEecCCccccCcCC--ccceeEE
Q 038576           94 SPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRILIGDSREYDAWDG--ISRISKL  170 (411)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~~~~~~~~~~~~~--~~~l~~L  170 (411)
                      |.+..  ++          ...+..-.++++|++++|+++.+-. .+..+.+|-.|.+..+.....|-..+  +.+++.|
T Consensus       159 N~is~--i~----------~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~L  226 (873)
T KOG4194|consen  159 NLISE--IP----------KPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESL  226 (873)
T ss_pred             chhhc--cc----------CCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhh
Confidence            76653  22          2445555567777777776555433 34555666667776666665554433  5555555


Q ss_pred             EecCCcccccccccccccccchhcccCCC---c--cccccccchhhhchHhhhccccccccccccccccccCCCCCcEEE
Q 038576          171 KLTNGANICLNEGHIMQLKRIEDLTSGGD---S--EALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLS  245 (411)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~--~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~  245 (411)
                      ++..+..--.+-..+++++.++.+.-+-+   .  ...+..+.++++|      ++..+. ++.+.....-.++.|+.|+
T Consensus       227 dLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l------~L~~N~-l~~vn~g~lfgLt~L~~L~  299 (873)
T KOG4194|consen  227 DLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHL------NLETNR-LQAVNEGWLFGLTSLEQLD  299 (873)
T ss_pred             hccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeeccccee------ecccch-hhhhhcccccccchhhhhc
Confidence            55332222223335555555554432111   1  1134455666666      665544 4444443445667777777


Q ss_pred             ecCCcCCccC-CCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCcccccc
Q 038576          246 IFMCDNLTHL-VPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVF  324 (411)
Q Consensus       246 l~~c~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~  324 (411)
                      +++ +.+... +..+...++|+.|+++++ .++.+++ ..+..+.+|+.|.++++. +..+-..           .+..+
T Consensus       300 lS~-NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~-~sf~~L~~Le~LnLs~Ns-i~~l~e~-----------af~~l  364 (873)
T KOG4194|consen  300 LSY-NAIQRIHIDSWSFTQKLKELDLSSN-RITRLDE-GSFRVLSQLEELNLSHNS-IDHLAEG-----------AFVGL  364 (873)
T ss_pred             cch-hhhheeecchhhhcccceeEecccc-ccccCCh-hHHHHHHHhhhhcccccc-hHHHHhh-----------HHHHh
Confidence            776 333221 122233677888888665 4555533 345667788888887754 5544321           45578


Q ss_pred             CCCCeeecCCCcCCceeccCCCccc-ccCCCcceEeecCCCCCccccCC-CCCCCCceEEEEecc
Q 038576          325 SELKELNLSNLQSLTSFSCSGNNCA-FKFPSLERLVVNRCPNMKIFSEG-ELSTPKLQKVQMSLV  387 (411)
Q Consensus       325 ~~L~~L~l~~c~~l~~~~~~~~~~~-~~~~~L~~L~i~~C~~l~~~p~~-~~~~~~L~~l~l~~~  387 (411)
                      .+|++|++++- .+... ....+.+ .++|+|++|++.+ ++++.+|.. +..++.|++|++.+|
T Consensus       365 ssL~~LdLr~N-~ls~~-IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N  426 (873)
T KOG4194|consen  365 SSLHKLDLRSN-ELSWC-IEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN  426 (873)
T ss_pred             hhhhhhcCcCC-eEEEE-EecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCC
Confidence            99999999984 45444 2222211 2579999999999 789999864 447899999999544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.80  E-value=5.5e-22  Score=186.08  Aligned_cols=324  Identities=18%  Similarity=0.261  Sum_probs=200.8

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccc--cchHHhcCCCCCCEEecCCCCCccccCcc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDME--ELAGEIGQLTQLRLLNLSKCFELKVIPPN   78 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~L~~c~~~~~~~~~   78 (411)
                      .+..+|+.++.|.+|+.|+++.|++.. -..+..++.||.++++.|++.  .+|..|.++..|..|+||+ +.++++|.+
T Consensus        43 ~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLSh-NqL~EvP~~  121 (1255)
T KOG0444|consen   43 KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSH-NQLREVPTN  121 (1255)
T ss_pred             hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecch-hhhhhcchh
Confidence            356788888888888888888888777 666778888888888888776  7888899999999999999 789999987


Q ss_pred             cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccc
Q 038576           79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREY  158 (411)
Q Consensus        79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~  158 (411)
                       +..-.++-.|++++|+|..  ||.          .-+.++..|-.|+++.|+...+|+.+..+.+|++|.++.+....+
T Consensus       122 -LE~AKn~iVLNLS~N~Iet--IPn----------~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hf  188 (1255)
T KOG0444|consen  122 -LEYAKNSIVLNLSYNNIET--IPN----------SLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHF  188 (1255)
T ss_pred             -hhhhcCcEEEEcccCcccc--CCc----------hHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHH
Confidence             8888899999999998863  443          566788888899999999999999988899999998875543322


Q ss_pred             cCc--CCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhcccccccccccccccccc
Q 038576          159 DAW--DGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESS  236 (411)
Q Consensus       159 ~~~--~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~  236 (411)
                      .--  ..+.++..|+++....            .+.++      .+++..+.+|..+      +++.+. +..++. ..-
T Consensus       189 QLrQLPsmtsL~vLhms~TqR------------Tl~N~------Ptsld~l~NL~dv------DlS~N~-Lp~vPe-cly  242 (1255)
T KOG0444|consen  189 QLRQLPSMTSLSVLHMSNTQR------------TLDNI------PTSLDDLHNLRDV------DLSENN-LPIVPE-CLY  242 (1255)
T ss_pred             HHhcCccchhhhhhhcccccc------------hhhcC------CCchhhhhhhhhc------cccccC-CCcchH-HHh
Confidence            100  0011111111111000            00000      0112233444444      444322 222221 112


Q ss_pred             CCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccc-cccccccccCCCCCC
Q 038576          237 NAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCV-MITEIVADEDDEGDN  315 (411)
Q Consensus       237 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~-~l~~~~~~~~~~~~~  315 (411)
                      .+++|..|++++ +.++.+.-....+.+|+.|.++.+ +++.+|.  .+-.++.|+.|.+.++. ..+.++.        
T Consensus       243 ~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~--avcKL~kL~kLy~n~NkL~FeGiPS--------  310 (1255)
T KOG0444|consen  243 KLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSRN-QLTVLPD--AVCKLTKLTKLYANNNKLTFEGIPS--------  310 (1255)
T ss_pred             hhhhhheeccCc-CceeeeeccHHHHhhhhhhccccc-hhccchH--HHhhhHHHHHHHhccCcccccCCcc--------
Confidence            445555555554 233322222222555555555544 3333321  23445555555554433 1122222        


Q ss_pred             ccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCCCceEEEEecc
Q 038576          316 YAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMSLV  387 (411)
Q Consensus       316 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~~~  387 (411)
                          ++..+..|+.+...+ ++++-+   ++.. ..|++|++|.+. |+.+-++|+++..+|-|+.|++..|
T Consensus       311 ----GIGKL~~Levf~aan-N~LElV---PEgl-cRC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreN  372 (1255)
T KOG0444|consen  311 ----GIGKLIQLEVFHAAN-NKLELV---PEGL-CRCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLREN  372 (1255)
T ss_pred             ----chhhhhhhHHHHhhc-cccccC---chhh-hhhHHHHHhccc-ccceeechhhhhhcCCcceeeccCC
Confidence                334456666666665 344444   2222 568999999884 5889999999999999999999744

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.77  E-value=1.3e-20  Score=176.91  Aligned_cols=155  Identities=22%  Similarity=0.342  Sum_probs=123.0

Q ss_pred             CCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCCCCccccCccccc
Q 038576            4 LALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVIPPNVIS   81 (411)
Q Consensus         4 ~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~~~~~l~   81 (411)
                      .-+|..+-++..|.+|+|+.|.++. |..+...+++-+|+|+.|+|..+|.. +-+++.|-+|+||+ +.+..+|+. +.
T Consensus        93 sGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ-~R  170 (1255)
T KOG0444|consen   93 SGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQ-IR  170 (1255)
T ss_pred             CCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHH-HH
Confidence            3468888888899999999999888 88888888999999999999988876 45888899999998 788888887 88


Q ss_pred             CCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeecc--CCcCCcccccCCCCcEEEEEecCCcccc
Q 038576           82 SLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQD--EKTLPRDLSFFKMLQRYRILIGDSREYD  159 (411)
Q Consensus        82 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~l~~~~~L~~L~i~~~~~~~~~  159 (411)
                      +|.+|+.|++++|++..            .++..+..+++|+.|++++..  ...+|..+..+.+|..++++.++....|
T Consensus       171 RL~~LqtL~Ls~NPL~h------------fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP  238 (1255)
T KOG0444|consen  171 RLSMLQTLKLSNNPLNH------------FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP  238 (1255)
T ss_pred             HHhhhhhhhcCCChhhH------------HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch
Confidence            89999999999988766            566777778888888888765  6778888888888888888766666555


Q ss_pred             CcCC-ccceeEEEe
Q 038576          160 AWDG-ISRISKLKL  172 (411)
Q Consensus       160 ~~~~-~~~l~~L~~  172 (411)
                      +... ..+++.|++
T Consensus       239 ecly~l~~LrrLNL  252 (1255)
T KOG0444|consen  239 ECLYKLRNLRRLNL  252 (1255)
T ss_pred             HHHhhhhhhheecc
Confidence            5433 334444444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.76  E-value=3e-21  Score=172.36  Aligned_cols=353  Identities=19%  Similarity=0.189  Sum_probs=203.3

Q ss_pred             CChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCC
Q 038576            6 LPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLS   84 (411)
Q Consensus         6 lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~   84 (411)
                      +-+.+.++..|.+|++.+|.+.+ |+.++.+..++.|+.+++++..+|..++.+.+|+.|+.++ +.+.++|++ ++.+-
T Consensus        60 l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~-n~~~el~~~-i~~~~  137 (565)
T KOG0472|consen   60 LREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS-NELKELPDS-IGRLL  137 (565)
T ss_pred             ccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc-cceeecCch-HHHHh
Confidence            33445555566666666666555 6666666666666666666666666666666666666666 455555555 55565


Q ss_pred             CccEEEecccccccCcccccccc------------ccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEe
Q 038576           85 RLEELYIGQSPIQWGKVEGVDGE------------RRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILI  152 (411)
Q Consensus        85 ~L~~L~l~~~~~~~~~~~~~~~~------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~  152 (411)
                      .|+.++..+|++..  +|+....            ...+.++..-+++.|++++...|..+.+|+.++.+.+|..|.+..
T Consensus       138 ~l~dl~~~~N~i~s--lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~  215 (565)
T KOG0472|consen  138 DLEDLDATNNQISS--LPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRR  215 (565)
T ss_pred             hhhhhhcccccccc--CchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhh
Confidence            66655555555542  2221110            111344555557888888888888889999999999999999988


Q ss_pred             cCCccccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccc----cccccchhhhchHhhhcccccccccc
Q 038576          153 GDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEA----LYTSFKNVENGMEAMMRGINHRRELK  228 (411)
Q Consensus       153 ~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~L~~L~~~~~~~l~~~~~l~  228 (411)
                      +.....|++.+++.+.+++...+..-.++..+..++..+..++-.-+...    -.-.+.+|+.|      +++++. +.
T Consensus       216 Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rL------DlSNN~-is  288 (565)
T KOG0472|consen  216 NKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERL------DLSNND-IS  288 (565)
T ss_pred             cccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhh------cccCCc-cc
Confidence            88888898888888888877554333344444444444443332211111    11234566667      666654 44


Q ss_pred             ccccccccCCCCCcEEEecCCcCC-------------------c-----cCCC-----------CCC------CCCCcCe
Q 038576          229 QIFKQESSNAKDLEKLSIFMCDNL-------------------T-----HLVP-----------SST------SFQNLTT  267 (411)
Q Consensus       229 ~~~~~~~~~~~~L~~L~l~~c~~l-------------------~-----~~~~-----------~~~------~~~~L~~  267 (411)
                      .++. ..+++ +|+.|.+.+.+--                   +     ++..           ...      ...+.|.
T Consensus       289 ~Lp~-sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tki  366 (565)
T KOG0472|consen  289 SLPY-SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKI  366 (565)
T ss_pred             cCCc-ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhh
Confidence            4433 22344 5555555543211                   0     0000           000      1113344


Q ss_pred             EeecCCCCCccccc------------------------------------------------hHhhhccccccEEeEccc
Q 038576          268 LTVWGCHGMINVLT------------------------------------------------SSTARSLVRLRQMTIKVC  299 (411)
Q Consensus       268 L~l~~c~~l~~~~~------------------------------------------------~~~~~~l~~L~~L~l~~c  299 (411)
                      |++++ ..++++|.                                                ...+..+++|..|+++++
T Consensus       367 L~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN  445 (565)
T KOG0472|consen  367 LDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN  445 (565)
T ss_pred             hcccc-cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc
Confidence            44332 12222221                                                112455677777777775


Q ss_pred             ccccccccccCCCCCCccCccccccCCCCeeecCCCcCCceeccC---------------------CCcccccCCCcceE
Q 038576          300 VMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCS---------------------GNNCAFKFPSLERL  358 (411)
Q Consensus       300 ~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~---------------------~~~~~~~~~~L~~L  358 (411)
                      . +.+++.+.+.            +-.|+.|+++.- ..+.+|..                     ...+ .+..+|.+|
T Consensus       446 ~-Ln~LP~e~~~------------lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l-~nm~nL~tL  510 (565)
T KOG0472|consen  446 L-LNDLPEEMGS------------LVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGL-KNMRNLTTL  510 (565)
T ss_pred             h-hhhcchhhhh------------hhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHh-hhhhhccee
Confidence            5 6777665544            666777777753 33332210                     0111 345788889


Q ss_pred             eecCCCCCccccCCCCCCCCceEEEEeccc
Q 038576          359 VVNRCPNMKIFSEGELSTPKLQKVQMSLVD  388 (411)
Q Consensus       359 ~i~~C~~l~~~p~~~~~~~~L~~l~l~~~c  388 (411)
                      ++.+ +.+..+|..++.+.+|++|++.+|-
T Consensus       511 DL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  511 DLQN-NDLQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             ccCC-CchhhCChhhccccceeEEEecCCc
Confidence            8887 6788899988999999999997553

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.74  E-value=6.3e-20  Score=179.36  Aligned_cols=260  Identities=15%  Similarity=0.167  Sum_probs=153.8

Q ss_pred             CCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCC-ccceeEEEecCCcccccccccccccccchhcccCCC
Q 038576          121 KLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDG-ISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGD  199 (411)
Q Consensus       121 ~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~-~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  199 (411)
                      +|++++++.+....+|.++..+.+|+.+.+..+.....+.-.. ..+++.|....+. +..-.....+...+..++-.-+
T Consensus       242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N  320 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSN  320 (1081)
T ss_pred             cceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhc
Confidence            7889999999988899888889999988877665543332111 2222222211100 0000001111111111111100


Q ss_pred             ccc-----ccccc-chhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCC
Q 038576          200 SEA-----LYTSF-KNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGC  273 (411)
Q Consensus       200 ~~~-----~~~~~-~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c  273 (411)
                      ...     .+... ..|..|      +.+... +...+..+...++.|+.|.+.+..-.+...|....+++||.|+++++
T Consensus       321 ~L~~lp~~~l~v~~~~l~~l------n~s~n~-l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN  393 (1081)
T KOG0618|consen  321 NLPSLPDNFLAVLNASLNTL------NVSSNK-LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN  393 (1081)
T ss_pred             cccccchHHHhhhhHHHHHH------hhhhcc-ccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc
Confidence            000     00001 123444      333332 34444444467788999999884444555565556999999999887


Q ss_pred             CCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCcccccCC
Q 038576          274 HGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFP  353 (411)
Q Consensus       274 ~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~  353 (411)
                      . +..+ +.+.+.+++.|+.|+++++. ++.++....            .+++|++|...+ +.+..+| ..    ...+
T Consensus       394 r-L~~f-pas~~~kle~LeeL~LSGNk-L~~Lp~tva------------~~~~L~tL~ahs-N~l~~fP-e~----~~l~  452 (1081)
T KOG0618|consen  394 R-LNSF-PASKLRKLEELEELNLSGNK-LTTLPDTVA------------NLGRLHTLRAHS-NQLLSFP-EL----AQLP  452 (1081)
T ss_pred             c-cccC-CHHHHhchHHhHHHhcccch-hhhhhHHHH------------hhhhhHHHhhcC-Cceeech-hh----hhcC
Confidence            3 5554 66788999999999999976 888886543            489999998887 4577764 11    2358


Q ss_pred             CcceEeecCCCCCccccCCCCCC-CCceEEEEeccccc-hhcccCCchhhHHHHHHhhc
Q 038576          354 SLERLVVNRCPNMKIFSEGELST-PKLQKVQMSLVDEK-LWAWDRDLNTTIQYVYLKIK  410 (411)
Q Consensus       354 ~L~~L~i~~C~~l~~~p~~~~~~-~~L~~l~l~~~c~~-l~~~~~~~~~~l~~l~i~~~  410 (411)
                      .|+.++++ |+++..+-.....+ |+|++|++++|-.. +.+..++.+..+....++.+
T Consensus       453 qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  453 QLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             cceEEecc-cchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            99999995 47787533222224 89999999877632 24444555555555555543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.62  E-value=1.3e-17  Score=149.35  Aligned_cols=166  Identities=24%  Similarity=0.370  Sum_probs=96.8

Q ss_pred             CCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCccccc
Q 038576            3 LLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVIS   81 (411)
Q Consensus         3 l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~   81 (411)
                      +..+|++++++..|..++..+|.++. |+++.++..|..|++.+++++.+|+..-+++.|++|+... +-++.+|.+ ++
T Consensus       126 ~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~-lg  203 (565)
T KOG0472|consen  126 LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPPE-LG  203 (565)
T ss_pred             eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCChh-hc
Confidence            34456666666666666666666555 5555555555555555555555544433355555555544 344555544 45


Q ss_pred             CCCCccEEEecccccccCcccccccc-----------ccccchhh-ccCCCCCCEEEEeeccCCcCCcccccCCCCcEEE
Q 038576           82 SLSRLEELYIGQSPIQWGKVEGVDGE-----------RRNASLDE-LNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYR  149 (411)
Q Consensus        82 ~L~~L~~L~l~~~~~~~~~~~~~~~~-----------~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~  149 (411)
                      .+.+|+.|++..|.+..  +|..-+-           .....+.+ .+++.++..|++..|...++|.++..+++|.+|+
T Consensus       204 ~l~~L~~LyL~~Nki~~--lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLD  281 (565)
T KOG0472|consen  204 GLESLELLYLRRNKIRF--LPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLD  281 (565)
T ss_pred             chhhhHHHHhhhccccc--CCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhc
Confidence            55555555554444331  2211100           00022334 4488999999999999999999999999999999


Q ss_pred             EEecCCccccCcCCccceeEEEe
Q 038576          150 ILIGDSREYDAWDGISRISKLKL  172 (411)
Q Consensus       150 i~~~~~~~~~~~~~~~~l~~L~~  172 (411)
                      ++.+.....|--.+--.+..|.+
T Consensus       282 lSNN~is~Lp~sLgnlhL~~L~l  304 (565)
T KOG0472|consen  282 LSNNDISSLPYSLGNLHLKFLAL  304 (565)
T ss_pred             ccCCccccCCcccccceeeehhh
Confidence            99877665554433224444443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.59  E-value=8.2e-17  Score=157.84  Aligned_cols=340  Identities=19%  Similarity=0.183  Sum_probs=193.7

Q ss_pred             hccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEE
Q 038576           11 GLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEEL   89 (411)
Q Consensus        11 ~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L   89 (411)
                      .++.+|+.|++++|.+.. |..+..+.+|+.|.++.|.+...|.+++++.+|++|.|.+ +....+|.+ +..+.+|++|
T Consensus        42 ~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~-~~~lknl~~L  119 (1081)
T KOG0618|consen   42 EKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPAS-ISELKNLQYL  119 (1081)
T ss_pred             hheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chhhcCchh-HHhhhccccc
Confidence            344456666666666666 6666666666666666666666666666666666666665 566666665 6666666666


Q ss_pred             EecccccccCccccccccc--------------------------------cccchhhccCCCCCCEEEEeeccCCcCCc
Q 038576           90 YIGQSPIQWGKVEGVDGER--------------------------------RNASLDELNNLSKLTSLEILIQDEKTLPR  137 (411)
Q Consensus        90 ~l~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  137 (411)
                      ++++|.+..  +|.+....                                ....+.++.++..  .+++..|.+..  .
T Consensus       120 dlS~N~f~~--~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~--~  193 (1081)
T KOG0618|consen  120 DLSFNHFGP--IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV--L  193 (1081)
T ss_pred             ccchhccCC--CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh--h
Confidence            666665432  22222110                                0111222222222  36666655431  1


Q ss_pred             ccccC--------------------CCCcEEEEEecCCccccCcCCccceeEEEecCCcccccccccccccccchhcccC
Q 038576          138 DLSFF--------------------KMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSG  197 (411)
Q Consensus       138 ~l~~~--------------------~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~  197 (411)
                      .+..+                    ++++.|....+..........+..++.++++++.-..+. .++..|..+..+...
T Consensus       194 dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n  272 (1081)
T KOG0618|consen  194 DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNAN  272 (1081)
T ss_pred             hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEeccc
Confidence            11112                    233333333333332222233566666666654444444 556666666655543


Q ss_pred             CCccc----cccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCCccCCCC---------------
Q 038576          198 GDSEA----LYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPS---------------  258 (411)
Q Consensus       198 ~~~~~----~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~---------------  258 (411)
                      .+...    -....++|+.|      .+..+. +.+++... ..++.|++|++.. +++..++..               
T Consensus       273 ~N~l~~lp~ri~~~~~L~~l------~~~~ne-l~yip~~l-e~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s  343 (1081)
T KOG0618|consen  273 HNRLVALPLRISRITSLVSL------SAAYNE-LEYIPPFL-EGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVS  343 (1081)
T ss_pred             chhHHhhHHHHhhhhhHHHH------Hhhhhh-hhhCCCcc-cccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhh
Confidence            33221    12344566666      555543 55555422 4567777777765 333222221               


Q ss_pred             -----------CCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCC
Q 038576          259 -----------STSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSEL  327 (411)
Q Consensus       259 -----------~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L  327 (411)
                                 ...++.|+.|.+.++.--.+.+  ..+.++..|+.|+++++. +.+++..           ....++.|
T Consensus       344 ~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~--p~l~~~~hLKVLhLsyNr-L~~fpas-----------~~~kle~L  409 (1081)
T KOG0618|consen  344 SNKLSTLPSYEENNHAALQELYLANNHLTDSCF--PVLVNFKHLKVLHLSYNR-LNSFPAS-----------KLRKLEEL  409 (1081)
T ss_pred             hccccccccccchhhHHHHHHHHhcCcccccch--hhhccccceeeeeecccc-cccCCHH-----------HHhchHHh
Confidence                       1124455666665554333322  246789999999999965 7777654           33468899


Q ss_pred             CeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCCCceEEEEeccccch
Q 038576          328 KELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMSLVDEKL  391 (411)
Q Consensus       328 ~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~~~c~~l  391 (411)
                      ++|.+++ ++|+.+|-..    ..++.|++|...+ +.+..+|+ +..+|.|+.++++  |+++
T Consensus       410 eeL~LSG-NkL~~Lp~tv----a~~~~L~tL~ahs-N~l~~fPe-~~~l~qL~~lDlS--~N~L  464 (1081)
T KOG0618|consen  410 EELNLSG-NKLTTLPDTV----ANLGRLHTLRAHS-NQLLSFPE-LAQLPQLKVLDLS--CNNL  464 (1081)
T ss_pred             HHHhccc-chhhhhhHHH----HhhhhhHHHhhcC-Cceeechh-hhhcCcceEEecc--cchh
Confidence            9999999 5799884221    3478999998877 67889994 7789999999994  6666

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.59  E-value=2.1e-14  Score=144.39  Aligned_cols=252  Identities=20%  Similarity=0.169  Sum_probs=155.7

Q ss_pred             ccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEec
Q 038576           14 QNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIG   92 (411)
Q Consensus        14 ~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~   92 (411)
                      ..-..|+++++.++. |+.+.  .+|+.|++.+|+++.+|..   .++|++|++++ +.++.+|..    .++|+.|+++
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~-N~LtsLP~l----p~sL~~L~Ls  270 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSG-NQLTSLPVL----PPGLLELSIF  270 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecC-CccCcccCc----ccccceeecc
Confidence            456678899888888 77665  4789999999988888753   57889999988 578888752    4688888888


Q ss_pred             ccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCCccceeEEEe
Q 038576           93 QSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKL  172 (411)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~  172 (411)
                      +|.+..  ++           .   -..+|+.|++++|....+|..   .++|+.|+++.+....+|..           
T Consensus       271 ~N~L~~--Lp-----------~---lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l-----------  320 (788)
T PRK15387        271 SNPLTH--LP-----------A---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL-----------  320 (788)
T ss_pred             CCchhh--hh-----------h---chhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC-----------
Confidence            887642  21           1   124677888888887777753   46788888775544422221           


Q ss_pred             cCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCC
Q 038576          173 TNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNL  252 (411)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l  252 (411)
                                                        ..+|+.|      .+.++. ++.++.    ..++|+.|++++ +.+
T Consensus       321 ----------------------------------p~~L~~L------~Ls~N~-L~~LP~----lp~~Lq~LdLS~-N~L  354 (788)
T PRK15387        321 ----------------------------------PSELCKL------WAYNNQ-LTSLPT----LPSGLQELSVSD-NQL  354 (788)
T ss_pred             ----------------------------------ccccccc------ccccCc-cccccc----cccccceEecCC-Ccc
Confidence                                              1234455      554433 333322    224667777766 444


Q ss_pred             ccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeec
Q 038576          253 THLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNL  332 (411)
Q Consensus       253 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  332 (411)
                      ..++..   .++|+.|+++++ .++.++.     ..++|+.|+++++. ++.++.               ..++|+.|++
T Consensus       355 s~LP~l---p~~L~~L~Ls~N-~L~~LP~-----l~~~L~~LdLs~N~-Lt~LP~---------------l~s~L~~LdL  409 (788)
T PRK15387        355 ASLPTL---PSELYKLWAYNN-RLTSLPA-----LPSGLKELIVSGNR-LTSLPV---------------LPSELKELMV  409 (788)
T ss_pred             CCCCCC---Ccccceehhhcc-ccccCcc-----cccccceEEecCCc-ccCCCC---------------cccCCCEEEc
Confidence            444332   456666666554 3444432     13467777776654 444432               1356777777


Q ss_pred             CCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCCCceEEEEe
Q 038576          333 SNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMS  385 (411)
Q Consensus       333 ~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~  385 (411)
                      +++ .++++|..       +.+|+.|++.+ +.+..+|..+..+++|+.|+++
T Consensus       410 S~N-~LssIP~l-------~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs  453 (788)
T PRK15387        410 SGN-RLTSLPML-------PSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLE  453 (788)
T ss_pred             cCC-cCCCCCcc-------hhhhhhhhhcc-CcccccChHHhhccCCCeEECC
Confidence            774 45555321       24566677766 4566777666666777777775

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.53  E-value=5.6e-15  Score=151.42  Aligned_cols=127  Identities=21%  Similarity=0.346  Sum_probs=81.4

Q ss_pred             cCCCCCcEEEecCCcCCccCCCC-----CC-CCCCcCeEeecCCCCCccccchHhhhccccccEEeEccccccccccccc
Q 038576          236 SNAKDLEKLSIFMCDNLTHLVPS-----ST-SFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADE  309 (411)
Q Consensus       236 ~~~~~L~~L~l~~c~~l~~~~~~-----~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~  309 (411)
                      ..+++|++|.|.+|...+.....     .. .|+++..+.+.+|...++..   +....|+|+.|.+.+|..++++....
T Consensus       714 ~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~---~~~f~~~L~~l~l~~~~~~e~~i~~~  790 (889)
T KOG4658|consen  714 GSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLT---WLLFAPHLTSLSLVSCRLLEDIIPKL  790 (889)
T ss_pred             ccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccc---hhhccCcccEEEEecccccccCCCHH
Confidence            57788888888888765322110     11 16677777888888877753   34567888888888888887776654


Q ss_pred             CCCCCCccCccccccCCCCee-ecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccC
Q 038576          310 DDEGDNYAAQDEIVFSELKEL-NLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSE  371 (411)
Q Consensus       310 ~~~~~~~~~~~~~~~~~L~~L-~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~  371 (411)
                      ...  .........|.++..+ .+.+.+.+..+-+.+.    .++.|+.+.+..||+++.+|.
T Consensus       791 k~~--~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l----~~~~l~~~~ve~~p~l~~~P~  847 (889)
T KOG4658|consen  791 KAL--LELKELILPFNKLEGLRMLCSLGGLPQLYWLPL----SFLKLEELIVEECPKLGKLPL  847 (889)
T ss_pred             HHh--hhcccEEecccccccceeeecCCCCceeEeccc----CccchhheehhcCcccccCcc
Confidence            330  1111124456666666 4666666666622232    247788999999888887765

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.52  E-value=7.6e-15  Score=150.49  Aligned_cols=298  Identities=22%  Similarity=0.272  Sum_probs=172.0

Q ss_pred             cccCcEEEecCCc--CCC--CccccccccCcEEEeeCC-ccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCcc
Q 038576           13 LQNLQTLSLDDCE--LGD--MAIIGDLKKLVILALRGS-DMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLE   87 (411)
Q Consensus        13 l~~L~~L~l~~~~--l~~--~~~l~~l~~L~~L~L~~~-~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~   87 (411)
                      +..|+.|-+.++.  +..  ...|..++.|++||+++| .+..+|..|+++.+||||++++ +.+.++|.+ +++|..|.
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~-l~~Lk~L~  621 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSG-LGNLKKLI  621 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchH-HHHHHhhh
Confidence            4467777777775  444  233667778888888876 5667787788888888888877 677777777 77778888


Q ss_pred             EEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccC---CcCCcccccCCCCcEEEEEecCCccccCcCCc
Q 038576           88 ELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDE---KTLPRDLSFFKMLQRYRILIGDSREYDAWDGI  164 (411)
Q Consensus        88 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~---~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~  164 (411)
                      +|++..+....            ..+.....+.+|++|.+.....   ......+..+.+|+.+.+...+.....+..+.
T Consensus       622 ~Lnl~~~~~l~------------~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~  689 (889)
T KOG4658|consen  622 YLNLEVTGRLE------------SIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGM  689 (889)
T ss_pred             eeccccccccc------------cccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhh
Confidence            88777665432            2235555577777777765431   11122233445555555443322101111111


Q ss_pred             cceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccc---ccc-ccC-CC
Q 038576          165 SRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIF---KQE-SSN-AK  239 (411)
Q Consensus       165 ~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~---~~~-~~~-~~  239 (411)
                      .++..+...         ..+.+ ....      ........+.+|+.|      .+.+|...+...   ... ... |+
T Consensus       690 ~~L~~~~~~---------l~~~~-~~~~------~~~~~~~~l~~L~~L------~i~~~~~~e~~~~~~~~~~~~~~f~  747 (889)
T KOG4658|consen  690 TRLRSLLQS---------LSIEG-CSKR------TLISSLGSLGNLEEL------SILDCGISEIVIEWEESLIVLLCFP  747 (889)
T ss_pred             HHHHHHhHh---------hhhcc-cccc------eeecccccccCcceE------EEEcCCCchhhcccccccchhhhHH
Confidence            111111100         00000 0000      011123356788888      888877543211   111 122 67


Q ss_pred             CCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEe-----------Ecccccccccccc
Q 038576          240 DLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMT-----------IKVCVMITEIVAD  308 (411)
Q Consensus       240 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~-----------l~~c~~l~~~~~~  308 (411)
                      ++.++.+.+|.......+... .|+|+.|.+..|..++++.+  ....+..++.+.           +.+...+.++.. 
T Consensus       748 ~l~~~~~~~~~~~r~l~~~~f-~~~L~~l~l~~~~~~e~~i~--~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~-  823 (889)
T KOG4658|consen  748 NLSKVSILNCHMLRDLTWLLF-APHLTSLSLVSCRLLEDIIP--KLKALLELKELILPFNKLEGLRMLCSLGGLPQLYW-  823 (889)
T ss_pred             HHHHHHhhccccccccchhhc-cCcccEEEEecccccccCCC--HHHHhhhcccEEecccccccceeeecCCCCceeEe-
Confidence            788888888877776665544 78999999999988887533  334444444322           222222222222 


Q ss_pred             cCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCC-CCCccccCC
Q 038576          309 EDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRC-PNMKIFSEG  372 (411)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C-~~l~~~p~~  372 (411)
                                 ....+++|+.+.+..||++...           |.+.++.+.+| +.+..+|..
T Consensus       824 -----------~~l~~~~l~~~~ve~~p~l~~~-----------P~~~~~~i~~~~~~~~~~~~~  866 (889)
T KOG4658|consen  824 -----------LPLSFLKLEELIVEECPKLGKL-----------PLLSTLTIVGCEEKLKEYPDG  866 (889)
T ss_pred             -----------cccCccchhheehhcCcccccC-----------ccccccceeccccceeecCCc
Confidence                       2223666888888888877776           78888888887 777777764

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.51  E-value=1.4e-13  Score=138.51  Aligned_cols=244  Identities=19%  Similarity=0.135  Sum_probs=159.2

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVI   80 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l   80 (411)
                      .++.+|..+..  +|+.|++++|.++. |..   .++|++|++++|.++.+|..   .++|+.|++++ +.+..+|..  
T Consensus       212 ~LtsLP~~l~~--~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~-N~L~~Lp~l--  280 (788)
T PRK15387        212 GLTTLPDCLPA--HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFS-NPLTHLPAL--  280 (788)
T ss_pred             CCCcCCcchhc--CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccC-Cchhhhhhc--
Confidence            46788988764  89999999999998 542   47999999999999988853   46899999999 578888752  


Q ss_pred             cCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccC
Q 038576           81 SSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDA  160 (411)
Q Consensus        81 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~  160 (411)
                        ..+|+.|++++|.+..  +|           .   .+++|+.|++++|.+..+|..   ..+|+.|.+..+....+|.
T Consensus       281 --p~~L~~L~Ls~N~Lt~--LP-----------~---~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~LP~  339 (788)
T PRK15387        281 --PSGLCKLWIFGNQLTS--LP-----------V---LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLPT  339 (788)
T ss_pred             --hhhcCEEECcCCcccc--cc-----------c---cccccceeECCCCccccCCCC---cccccccccccCccccccc
Confidence              3678899999998753  22           2   246799999999988887753   3467778777666555554


Q ss_pred             cCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCC
Q 038576          161 WDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKD  240 (411)
Q Consensus       161 ~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~  240 (411)
                      +  +.+++.|+++++.-.        .++.               ...+|+.|      .+.++. +..++.    .+++
T Consensus       340 l--p~~Lq~LdLS~N~Ls--------~LP~---------------lp~~L~~L------~Ls~N~-L~~LP~----l~~~  383 (788)
T PRK15387        340 L--PSGLQELSVSDNQLA--------SLPT---------------LPSELYKL------WAYNNR-LTSLPA----LPSG  383 (788)
T ss_pred             c--ccccceEecCCCccC--------CCCC---------------CCccccee------hhhccc-cccCcc----cccc
Confidence            2  345566665442111        1100               12345566      655533 444332    2356


Q ss_pred             CcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCcc
Q 038576          241 LEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQD  320 (411)
Q Consensus       241 L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~  320 (411)
                      |+.|+++++ .+..++..   .++|+.|++++|. ++.++.     .+.+|+.|+++++. ++.++...           
T Consensus       384 L~~LdLs~N-~Lt~LP~l---~s~L~~LdLS~N~-LssIP~-----l~~~L~~L~Ls~Nq-Lt~LP~sl-----------  441 (788)
T PRK15387        384 LKELIVSGN-RLTSLPVL---PSELKELMVSGNR-LTSLPM-----LPSGLLSLSVYRNQ-LTRLPESL-----------  441 (788)
T ss_pred             cceEEecCC-cccCCCCc---ccCCCEEEccCCc-CCCCCc-----chhhhhhhhhccCc-ccccChHH-----------
Confidence            777777763 44443332   4577777777764 444432     13466777777654 55555432           


Q ss_pred             ccccCCCCeeecCCCc
Q 038576          321 EIVFSELKELNLSNLQ  336 (411)
Q Consensus       321 ~~~~~~L~~L~l~~c~  336 (411)
                       ..+++|+.|++++.+
T Consensus       442 -~~L~~L~~LdLs~N~  456 (788)
T PRK15387        442 -IHLSSETTVNLEGNP  456 (788)
T ss_pred             -hhccCCCeEECCCCC
Confidence             236777777777754

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.47  E-value=3.5e-13  Score=136.30  Aligned_cols=117  Identities=21%  Similarity=0.309  Sum_probs=86.6

Q ss_pred             ccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEec
Q 038576           14 QNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIG   92 (411)
Q Consensus        14 ~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~   92 (411)
                      .+...|++++++++. |..+.  .+|+.|++++|+++.+|..+.  .+|++|++++ +.++.+|.. +  ..+|+.|+++
T Consensus       178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~-N~LtsLP~~-l--~~~L~~L~Ls  249 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANS-NQLTSIPAT-L--PDTIQEMELS  249 (754)
T ss_pred             cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCC-CccccCChh-h--hccccEEECc
Confidence            456788998888888 66554  478999999998888887664  5899999998 578888865 3  3478999999


Q ss_pred             ccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCC
Q 038576           93 QSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDS  155 (411)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~  155 (411)
                      +|.+..  +|           ..+.  .+|+.|++++|.+..+|..+.  .+|+.|+++.+..
T Consensus       250 ~N~L~~--LP-----------~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~L  295 (754)
T PRK15370        250 INRITE--LP-----------ERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSI  295 (754)
T ss_pred             CCccCc--CC-----------hhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCcc
Confidence            887752  33           3332  478889998888877877653  5788888765443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.45  E-value=2e-13  Score=138.12  Aligned_cols=128  Identities=18%  Similarity=0.296  Sum_probs=99.0

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVI   80 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l   80 (411)
                      +++.+|..+.  .+|+.|++++|.++. |..+.  .+|++|++++|.++.+|..+.  .+|+.|++++ +.+..+|.. +
T Consensus       189 ~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~-N~L~~LP~~-l  260 (754)
T PRK15370        189 GLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSI-NRITELPER-L  260 (754)
T ss_pred             CcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcC-CccCcCChh-H
Confidence            5678887765  489999999999998 76554  599999999999999987664  4799999999 578889876 4


Q ss_pred             cCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCc
Q 038576           81 SSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSR  156 (411)
Q Consensus        81 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~  156 (411)
                      .  .+|+.|++++|.+..  +|           ..+.  .+|+.|++++|.+..+|..+.  .+|+.|++..+...
T Consensus       261 ~--s~L~~L~Ls~N~L~~--LP-----------~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt  317 (754)
T PRK15370        261 P--SALQSLDLFHNKISC--LP-----------ENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLT  317 (754)
T ss_pred             h--CCCCEEECcCCccCc--cc-----------cccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccc
Confidence            3  589999999988753  33           3332  479999999999888876542  46777777644433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.40  E-value=3.5e-15  Score=118.98  Aligned_cols=136  Identities=26%  Similarity=0.325  Sum_probs=103.1

Q ss_pred             hhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccE
Q 038576           10 LGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEE   88 (411)
Q Consensus        10 l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~   88 (411)
                      +-++.+...|-++.|+++. |+.+..+.+|+.|++.+|.++++|..++.+++|+.|+++- +.+..+|.+ ++.++.|+.
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprg-fgs~p~lev  106 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRG-FGSFPALEV  106 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccc-cCCCchhhh
Confidence            3456778888899999888 8888999999999999999999999999999999999887 788888888 899999999


Q ss_pred             EEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccc
Q 038576           89 LYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREY  158 (411)
Q Consensus        89 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~  158 (411)
                      ||+.+|......+           ++.+-.+..|+.|.++.|.+..+|+.++.+++||.|.+..++..+.
T Consensus       107 ldltynnl~e~~l-----------pgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~l  165 (264)
T KOG0617|consen  107 LDLTYNNLNENSL-----------PGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSL  165 (264)
T ss_pred             hhccccccccccC-----------CcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhC
Confidence            9998887754233           3555555666666666666666666666666666666655544433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.39  E-value=5.6e-15  Score=117.78  Aligned_cols=141  Identities=23%  Similarity=0.359  Sum_probs=122.7

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCc-cccCccc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFEL-KVIPPNV   79 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~-~~~~~~~   79 (411)
                      +++.+|..+..+.+|+.|++++|++++ |.+++.+++|+.|++.-|++..+|..++.++.|+.||+.+++-- ..+|.. 
T Consensus        44 Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgn-  122 (264)
T KOG0617|consen   44 KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGN-  122 (264)
T ss_pred             ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcc-
Confidence            466789999999999999999999999 99999999999999999999999999999999999999994332 234655 


Q ss_pred             ccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCc
Q 038576           80 ISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSR  156 (411)
Q Consensus        80 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~  156 (411)
                      +-.++.|+-|+++.|.+.             -.+.+++++++|+-|.+..|...++|..++.+..|+.|+|..+...
T Consensus       123 ff~m~tlralyl~dndfe-------------~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  123 FFYMTTLRALYLGDNDFE-------------ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             hhHHHHHHHHHhcCCCcc-------------cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence            678889999999988764             3558999999999999999999999999999999999999855544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.35  E-value=1.7e-14  Score=129.32  Aligned_cols=138  Identities=17%  Similarity=0.259  Sum_probs=112.8

Q ss_pred             CCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCccc
Q 038576            3 LLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPPNV   79 (411)
Q Consensus         3 l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~~~   79 (411)
                      ++.+|..+..  .-..++|..|+|+.  +..|+.+++||.|||+.|.|+.| |.+|..+++|-.|-+-++++++++|.++
T Consensus        58 L~eVP~~LP~--~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~  135 (498)
T KOG4237|consen   58 LTEVPANLPP--ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA  135 (498)
T ss_pred             cccCcccCCC--cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence            4556655432  45678999999999  57899999999999999999966 6779999999988888779999999999


Q ss_pred             ccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc-ccccCCCCcEEEEEecC
Q 038576           80 ISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRILIGD  154 (411)
Q Consensus        80 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~~~~  154 (411)
                      +++|.+|+.|.+..|.+.-            .....+..+++|..|.+..|.+..++. .+..+..++.+++..+.
T Consensus       136 F~gL~slqrLllNan~i~C------------ir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  136 FGGLSSLQRLLLNANHINC------------IRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             hhhHHHHHHHhcChhhhcc------------hhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence            9999999999999887653            344788899999999999998887777 56677777777765433

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.33  E-value=1.8e-14  Score=130.02  Aligned_cols=309  Identities=18%  Similarity=0.210  Sum_probs=184.7

Q ss_pred             ccCcEEEecCCc-CCC--Cc-cccccccCcEEEeeCC-ccc--cchHHhcCCCCCCEEecCCCCCccccCcc-cccCCCC
Q 038576           14 QNLQTLSLDDCE-LGD--MA-IIGDLKKLVILALRGS-DME--ELAGEIGQLTQLRLLNLSKCFELKVIPPN-VISSLSR   85 (411)
Q Consensus        14 ~~L~~L~l~~~~-l~~--~~-~l~~l~~L~~L~L~~~-~l~--~lp~~i~~l~~L~~L~L~~c~~~~~~~~~-~l~~L~~   85 (411)
                      ..||.|+++|+. ...  .. ...++++++.|++.+| +++  .+-..-..+.+|++|++..|..+++.... ....+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            357777888876 333  22 2346778888888887 555  23333346788888888888777766432 3446788


Q ss_pred             ccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCCcc
Q 038576           86 LEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGIS  165 (411)
Q Consensus        86 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~  165 (411)
                      |+++++++|....    +      +.+..-...+..++.+...+|.....-. +..         ..++         ..
T Consensus       218 L~~lNlSwc~qi~----~------~gv~~~~rG~~~l~~~~~kGC~e~~le~-l~~---------~~~~---------~~  268 (483)
T KOG4341|consen  218 LKYLNLSWCPQIS----G------NGVQALQRGCKELEKLSLKGCLELELEA-LLK---------AAAY---------CL  268 (483)
T ss_pred             HHHhhhccCchhh----c------CcchHHhccchhhhhhhhcccccccHHH-HHH---------Hhcc---------Ch
Confidence            8888888875322    0      0111222223334444333432111100 000         0000         00


Q ss_pred             ceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhcccccccccccccccc-ccCCCCCcEE
Q 038576          166 RISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQE-SSNAKDLEKL  244 (411)
Q Consensus       166 ~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~-~~~~~~L~~L  244 (411)
                      .+..+++.             .|..+.+.+...    .-.++..|+.|      ..++|..+++..... ....++|+.|
T Consensus       269 ~i~~lnl~-------------~c~~lTD~~~~~----i~~~c~~lq~l------~~s~~t~~~d~~l~aLg~~~~~L~~l  325 (483)
T KOG4341|consen  269 EILKLNLQ-------------HCNQLTDEDLWL----IACGCHALQVL------CYSSCTDITDEVLWALGQHCHNLQVL  325 (483)
T ss_pred             Hhhccchh-------------hhccccchHHHH----HhhhhhHhhhh------cccCCCCCchHHHHHHhcCCCceEEE
Confidence            11111111             222222221100    11257889999      999998877644332 3577999999


Q ss_pred             EecCCcCCc--cCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCcccc
Q 038576          245 SIFMCDNLT--HLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEI  322 (411)
Q Consensus       245 ~l~~c~~l~--~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~  322 (411)
                      .++.|..++  ++......++.|+.+++..|..+.+--..+...+++.|+.|.+++|..+++...       ..+....-
T Consensus       326 ~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi-------~~l~~~~c  398 (483)
T KOG4341|consen  326 ELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGI-------RHLSSSSC  398 (483)
T ss_pred             eccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhh-------hhhhhccc
Confidence            999999873  445556679999999999998887753445567899999999999987665521       11111223


Q ss_pred             ccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCC--CCCCCCceEEEE
Q 038576          323 VFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEG--ELSTPKLQKVQM  384 (411)
Q Consensus       323 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~--~~~~~~L~~l~l  384 (411)
                      ....|..+.+++||.+.+-  ..++. ..|++||.+++.+|..+..-+..  ..++|+++...+
T Consensus       399 ~~~~l~~lEL~n~p~i~d~--~Le~l-~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  399 SLEGLEVLELDNCPLITDA--TLEHL-SICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY  459 (483)
T ss_pred             cccccceeeecCCCCchHH--HHHHH-hhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence            4678999999999988775  33333 56899999999999988754321  225666655444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.20  E-value=3e-12  Score=119.20  Aligned_cols=38  Identities=11%  Similarity=0.170  Sum_probs=19.0

Q ss_pred             CCCcCeEeecCCCCCccccchHhhhc----cccccEEeEcccc
Q 038576          262 FQNLTTLTVWGCHGMINVLTSSTARS----LVRLRQMTIKVCV  300 (411)
Q Consensus       262 ~~~L~~L~l~~c~~l~~~~~~~~~~~----l~~L~~L~l~~c~  300 (411)
                      +++|+.|++++|. +++.........    .+.|++|++.+|.
T Consensus       220 ~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~  261 (319)
T cd00116         220 LKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND  261 (319)
T ss_pred             cCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC
Confidence            5666666666653 332212122222    2566666666664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.17  E-value=5.3e-12  Score=117.57  Aligned_cols=77  Identities=25%  Similarity=0.287  Sum_probs=43.1

Q ss_pred             EEecCCcCCC---CccccccccCcEEEeeCCccc-----cchHHhcCCCCCCEEecCCCCCccc-------cCcccccCC
Q 038576           19 LSLDDCELGD---MAIIGDLKKLVILALRGSDME-----ELAGEIGQLTQLRLLNLSKCFELKV-------IPPNVISSL   83 (411)
Q Consensus        19 L~l~~~~l~~---~~~l~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~L~~c~~~~~-------~~~~~l~~L   83 (411)
                      |+|..+.+..   ...+..+.+|++|+++++.++     .++..+...++|++|+++++ .+..       ++.. +..+
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~-l~~~   80 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQG-LTKG   80 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHH-HHhc
Confidence            4555555542   344455566777777777663     34455556666777777663 2221       1222 4556


Q ss_pred             CCccEEEecccccc
Q 038576           84 SRLEELYIGQSPIQ   97 (411)
Q Consensus        84 ~~L~~L~l~~~~~~   97 (411)
                      ++|++|++++|.+.
T Consensus        81 ~~L~~L~l~~~~~~   94 (319)
T cd00116          81 CGLQELDLSDNALG   94 (319)
T ss_pred             CceeEEEccCCCCC
Confidence            67777777666553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.13  E-value=2.7e-11  Score=100.53  Aligned_cols=128  Identities=23%  Similarity=0.291  Sum_probs=54.3

Q ss_pred             hhccccCcEEEecCCcCCCCcccc-ccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccE
Q 038576           10 LGLLQNLQTLSLDDCELGDMAIIG-DLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEE   88 (411)
Q Consensus        10 l~~l~~L~~L~l~~~~l~~~~~l~-~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~   88 (411)
                      +.+...++.|+|+|+.++..+.++ .+.+|+.|++++|.++.++ .+..+++|++|++++ +.+++++......+++|++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccchHHhCCcCCE
Confidence            455667899999999999866776 5789999999999999885 578899999999999 7899987652346999999


Q ss_pred             EEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc----ccccCCCCcEEEE
Q 038576           89 LYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR----DLSFFKMLQRYRI  150 (411)
Q Consensus        89 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~i  150 (411)
                      |++++|.+..           ......+..+++|+.|++.+|.....+.    .+..+++|+.|+-
T Consensus        93 L~L~~N~I~~-----------l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   93 LYLSNNKISD-----------LNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             EE-TTS---S-----------CCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             EECcCCcCCC-----------hHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            9999998853           1345778889999999999998655443    3567889998864

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.06  E-value=6.9e-12  Score=112.77  Aligned_cols=117  Identities=21%  Similarity=0.325  Sum_probs=99.3

Q ss_pred             CCCCCCh-hhhccccCcEEEecCCcCCC--CccccccccCcEEEeeC-CccccchHH-hcCCCCCCEEecCCCCCccccC
Q 038576            2 HLLALPS-SLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRG-SDMEELAGE-IGQLTQLRLLNLSKCFELKVIP   76 (411)
Q Consensus         2 ~l~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~-~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~~   76 (411)
                      .|+.+|+ .|+.+++||+|||+.|.|+.  |..|.++..|-.|-+.+ |+|+.+|.. |++|..|+.|.+.- +.+.-++
T Consensus        78 ~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa-n~i~Cir  156 (498)
T KOG4237|consen   78 QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA-NHINCIR  156 (498)
T ss_pred             CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh-hhhcchh
Confidence            3677885 49999999999999999988  89999999999998888 799999975 88999999999988 5777777


Q ss_pred             cccccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeecc
Q 038576           77 PNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQD  131 (411)
Q Consensus        77 ~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  131 (411)
                      ..++..+++|..|.+..|.+..            .....+..+..++++++..+.
T Consensus       157 ~~al~dL~~l~lLslyDn~~q~------------i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  157 QDALRDLPSLSLLSLYDNKIQS------------ICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             HHHHHHhhhcchhcccchhhhh------------hccccccchhccchHhhhcCc
Confidence            7779999999999999987753            223577888888888887665

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.98  E-value=1.6e-11  Score=111.26  Aligned_cols=285  Identities=18%  Similarity=0.183  Sum_probs=181.7

Q ss_pred             ccCcEEEeeCCccc---cchHHhcCCCCCCEEecCCCCCccccCc-ccccCCCCccEEEecccccccCcccccccccccc
Q 038576           36 KKLVILALRGSDME---ELAGEIGQLTQLRLLNLSKCFELKVIPP-NVISSLSRLEELYIGQSPIQWGKVEGVDGERRNA  111 (411)
Q Consensus        36 ~~L~~L~L~~~~l~---~lp~~i~~l~~L~~L~L~~c~~~~~~~~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~  111 (411)
                      -.|+.|.++|+.-.   .+-....+++++++|++.+|.++++-.. .+-..++.|+++++..|....          + .
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT----------~-~  206 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSIT----------D-V  206 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhH----------H-H
Confidence            46888899888322   4444556889999999999887776532 113468889999998865322          0 2


Q ss_pred             chh-hccCCCCCCEEEEeeccCCc---CCcccccCCCCcEEEEEecCCccccCcCCccceeEEEecCCcccccccccccc
Q 038576          112 SLD-ELNNLSKLTSLEILIQDEKT---LPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQ  187 (411)
Q Consensus       112 ~~~-~l~~l~~L~~L~l~~~~~~~---~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~  187 (411)
                      ..+ --..+++|.+++++||....   +..-...+.+++.+...                      +|....        
T Consensus       207 ~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~k----------------------GC~e~~--------  256 (483)
T KOG4341|consen  207 SLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLK----------------------GCLELE--------  256 (483)
T ss_pred             HHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhc----------------------cccccc--------
Confidence            222 33467888888888876221   11111223333333222                      111111        


Q ss_pred             cccchhcccCCCccccccccchhhhchHhhhccccccccccccccc-cccCCCCCcEEEecCCcCCccCC--CCCCCCCC
Q 038576          188 LKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQ-ESSNAKDLEKLSIFMCDNLTHLV--PSSTSFQN  264 (411)
Q Consensus       188 ~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~--~~~~~~~~  264 (411)
                      ++.+....         ..+..+.++      ++.+|..+++.... ....+..|+.|+.++|....+..  ....+.++
T Consensus       257 le~l~~~~---------~~~~~i~~l------nl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~  321 (483)
T KOG4341|consen  257 LEALLKAA---------AYCLEILKL------NLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN  321 (483)
T ss_pred             HHHHHHHh---------ccChHhhcc------chhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence            01111110         134456666      77788777664422 12467889999999998874432  23345899


Q ss_pred             cCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCcee---
Q 038576          265 LTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSF---  341 (411)
Q Consensus       265 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~---  341 (411)
                      |+.+.+.+|...++..-.....+.+.|+.+++.+|....+-..          ......+|.|+.|.++.|..+++-   
T Consensus       322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL----------~sls~~C~~lr~lslshce~itD~gi~  391 (483)
T KOG4341|consen  322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTL----------ASLSRNCPRLRVLSLSHCELITDEGIR  391 (483)
T ss_pred             eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhH----------hhhccCCchhccCChhhhhhhhhhhhh
Confidence            9999999999999887667778899999999999875444311          112346899999999999877764   


Q ss_pred             --ccCCCcccccCCCcceEeecCCCCCcccc-CCCCCCCCceEEEEeccccch
Q 038576          342 --SCSGNNCAFKFPSLERLVVNRCPNMKIFS-EGELSTPKLQKVQMSLVDEKL  391 (411)
Q Consensus       342 --~~~~~~~~~~~~~L~~L~i~~C~~l~~~p-~~~~~~~~L~~l~l~~~c~~l  391 (411)
                        ....    .....|+.+.+.+|+.+.+-. +.....+.|+.+++. .|...
T Consensus       392 ~l~~~~----c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~-~~q~v  439 (483)
T KOG4341|consen  392 HLSSSS----CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELI-DCQDV  439 (483)
T ss_pred             hhhhcc----ccccccceeeecCCCCchHHHHHHHhhCcccceeeee-chhhh
Confidence              1111    234789999999999887522 234568899998886 66655

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.80  E-value=4.6e-09  Score=87.27  Aligned_cols=110  Identities=25%  Similarity=0.343  Sum_probs=54.8

Q ss_pred             hhh-ccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHh-cCCCCCCEEecCCCCCccccCc-ccccCCCC
Q 038576            9 SLG-LLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEI-GQLTQLRLLNLSKCFELKVIPP-NVISSLSR   85 (411)
Q Consensus         9 ~l~-~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i-~~l~~L~~L~L~~c~~~~~~~~-~~l~~L~~   85 (411)
                      .++ .+.+|+.|++++|.++..+.+..++.|++|++++|+++.+...+ ..+++|++|++++ +.+.++.. ..++.+++
T Consensus        36 ~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~  114 (175)
T PF14580_consen   36 NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN-NKISDLNELEPLSSLPK  114 (175)
T ss_dssp             S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT
T ss_pred             chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC-CcCCChHHhHHHHcCCC
Confidence            455 47899999999999999778999999999999999999886655 4699999999999 67776642 22778999


Q ss_pred             ccEEEecccccccCccccccccccccchhhccCCCCCCEEEEe
Q 038576           86 LEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEIL  128 (411)
Q Consensus        86 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  128 (411)
                      |+.|++.+|++.. . +       .--...+..+|+|+.||-.
T Consensus       115 L~~L~L~~NPv~~-~-~-------~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen  115 LRVLSLEGNPVCE-K-K-------NYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             --EEE-TT-GGGG-S-T-------THHHHHHHH-TT-SEETTE
T ss_pred             cceeeccCCcccc-h-h-------hHHHHHHHHcChhheeCCE
Confidence            9999999998754 1 1       1123455678888888754

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=2.3e-09  Score=97.98  Aligned_cols=108  Identities=23%  Similarity=0.213  Sum_probs=70.5

Q ss_pred             hccccCcEEEecCCcCCC-C--ccccccccCcEEEeeCCccc---cchHHhcCCCCCCEEecCCCCCccccCcc-cccCC
Q 038576           11 GLLQNLQTLSLDDCELGD-M--AIIGDLKKLVILALRGSDME---ELAGEIGQLTQLRLLNLSKCFELKVIPPN-VISSL   83 (411)
Q Consensus        11 ~~l~~L~~L~l~~~~l~~-~--~~l~~l~~L~~L~L~~~~l~---~lp~~i~~l~~L~~L~L~~c~~~~~~~~~-~l~~L   83 (411)
                      +++..||...|.++.+.. +  .....|++++.||+++|-+.   .+-..+..+++|+.|+++. +.+...-.+ .-..+
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~-Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS-NRLSNFISSNTTLLL  196 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccc-ccccCCccccchhhh
Confidence            466778888888888766 3  36677888888888888555   3444566788888888888 444433221 12357


Q ss_pred             CCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeec
Q 038576           84 SRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQ  130 (411)
Q Consensus        84 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  130 (411)
                      ++|+.|.++.|.+.+-           .+..-+..+|+|..|.+..|
T Consensus       197 ~~lK~L~l~~CGls~k-----------~V~~~~~~fPsl~~L~L~~N  232 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWK-----------DVQWILLTFPSLEVLYLEAN  232 (505)
T ss_pred             hhhheEEeccCCCCHH-----------HHHHHHHhCCcHHHhhhhcc
Confidence            7888888888877660           11133345566666666665

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.77  E-value=8.3e-10  Score=104.02  Aligned_cols=137  Identities=25%  Similarity=0.376  Sum_probs=112.6

Q ss_pred             CCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCccccc
Q 038576            3 LLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVIS   81 (411)
Q Consensus         3 l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~   81 (411)
                      +..+|..++++..|.+++|+.|.+.. |..++.+ -|+.|.+++|+++.+|..++.+.+|..|+.+. +.+..+|+. ++
T Consensus       110 ~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~-nei~slpsq-l~  186 (722)
T KOG0532|consen  110 IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQ-LG  186 (722)
T ss_pred             ceecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhh-hhhhhchHH-hh
Confidence            55678888888888888888888888 7777766 48888888888888888888888888888888 578888877 88


Q ss_pred             CCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCc
Q 038576           82 SLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSR  156 (411)
Q Consensus        82 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~  156 (411)
                      .+.+|+.|.+..|.+.             ..+.++..| .|..||++.|+...+|-.+..|+.|+.|-+..+...
T Consensus       187 ~l~slr~l~vrRn~l~-------------~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  187 YLTSLRDLNVRRNHLE-------------DLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hHHHHHHHHHhhhhhh-------------hCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCC
Confidence            8888888888888765             355777755 489999999999999999999999999988755443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=2.7e-10  Score=99.07  Aligned_cols=85  Identities=26%  Similarity=0.190  Sum_probs=54.5

Q ss_pred             ccCcEEEeeCCccc--cchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccccccCccccccccccccch
Q 038576           36 KKLVILALRGSDME--ELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASL  113 (411)
Q Consensus        36 ~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  113 (411)
                      ..|++|||+...|+  .+...+..|.+|+.|.+.+ ..+.+--...|++=.+|+.++++.|.-..          ..+..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~iAkN~~L~~lnlsm~sG~t----------~n~~~  253 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTIAKNSNLVRLNLSMCSGFT----------ENALQ  253 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHHhccccceeeccccccccc----------hhHHH
Confidence            35778888887776  5555667777778777777 34433222226677778888887775321          11333


Q ss_pred             hhccCCCCCCEEEEeecc
Q 038576          114 DELNNLSKLTSLEILIQD  131 (411)
Q Consensus       114 ~~l~~l~~L~~L~l~~~~  131 (411)
                      --+.++..|..|+++||.
T Consensus       254 ll~~scs~L~~LNlsWc~  271 (419)
T KOG2120|consen  254 LLLSSCSRLDELNLSWCF  271 (419)
T ss_pred             HHHHhhhhHhhcCchHhh
Confidence            456677778888888775

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.72  E-value=1.1e-08  Score=69.70  Aligned_cols=59  Identities=29%  Similarity=0.447  Sum_probs=40.8

Q ss_pred             ccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccc
Q 038576           36 KKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSP   95 (411)
Q Consensus        36 ~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~   95 (411)
                      ++|++|++++|+++.+|. .+..+++|++|++++ +.++.++.+++..+++|++|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence            356777777777776664 466677777777776 56677766667777777777777765

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.62  E-value=1.8e-08  Score=96.66  Aligned_cols=145  Identities=27%  Similarity=0.318  Sum_probs=68.6

Q ss_pred             hccccCcEEEecCCcCCC-Cccccccc-cCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccE
Q 038576           11 GLLQNLQTLSLDDCELGD-MAIIGDLK-KLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEE   88 (411)
Q Consensus        11 ~~l~~L~~L~l~~~~l~~-~~~l~~l~-~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~   88 (411)
                      .+...++.|++.++.+.+ ++...... +|+.|+++++.+..+|..++.+++|+.|++++ +.+.++|.. .+.+++|+.
T Consensus       113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~-~~~~~~L~~  190 (394)
T COG4886         113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKL-LSNLSNLNN  190 (394)
T ss_pred             hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCC-chhhhhhhh-hhhhhhhhh
Confidence            334455555555555555 44444442 55555555555555555555555555555555 455555543 235555555


Q ss_pred             EEecccccccCcccccccc-----------c-cccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCc
Q 038576           89 LYIGQSPIQWGKVEGVDGE-----------R-RNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSR  156 (411)
Q Consensus        89 L~l~~~~~~~~~~~~~~~~-----------~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~  156 (411)
                      |+++++.+..  ++.....           . ....+..+.++.++..+.+..+....++..++.+.+++.|++..+...
T Consensus       191 L~ls~N~i~~--l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         191 LDLSGNKISD--LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             eeccCCcccc--CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccc
Confidence            5555555431  1110000           0 002233444444444444444444444444455555555555544444


Q ss_pred             ccc
Q 038576          157 EYD  159 (411)
Q Consensus       157 ~~~  159 (411)
                      .++
T Consensus       269 ~i~  271 (394)
T COG4886         269 SIS  271 (394)
T ss_pred             ccc
Confidence            333

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.62  E-value=9.9e-10  Score=103.49  Aligned_cols=135  Identities=24%  Similarity=0.328  Sum_probs=108.8

Q ss_pred             CCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCccccc
Q 038576            3 LLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVIS   81 (411)
Q Consensus         3 l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~   81 (411)
                      +..+|..+..|..|..+.+..|.+.. |..++++..|.+|+++.|.+..+|..+..|+ |+.|-+++ ++++.+|.. ++
T Consensus        87 ~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~-ig  163 (722)
T KOG0532|consen   87 FSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEE-IG  163 (722)
T ss_pred             cccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-CccccCCcc-cc
Confidence            45678888888888888888888888 8888888888888888888888888888887 88888888 788888887 88


Q ss_pred             CCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecC
Q 038576           82 SLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGD  154 (411)
Q Consensus        82 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~  154 (411)
                      .+..|.+||.+.|.+.             ..+..++.+.+|+.+.+..|....+|..+. .-.|.+|+++-+.
T Consensus       164 ~~~tl~~ld~s~nei~-------------slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNk  222 (722)
T KOG0532|consen  164 LLPTLAHLDVSKNEIQ-------------SLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNK  222 (722)
T ss_pred             cchhHHHhhhhhhhhh-------------hchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCc
Confidence            8888888888888765             356888888888888888888888888876 4456777776333

>PLN03150 hypothetical protein; Provisional

Probab=98.57  E-value=1.6e-07  Score=94.83  Aligned_cols=82  Identities=24%  Similarity=0.365  Sum_probs=41.8

Q ss_pred             CcEEEecCCcCCC--CccccccccCcEEEeeCCccc-cchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEec
Q 038576           16 LQTLSLDDCELGD--MAIIGDLKKLVILALRGSDME-ELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIG   92 (411)
Q Consensus        16 L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~   92 (411)
                      ++.|+|+++.+..  |..++++++|++|+|++|.+. .+|..++++++|+.|++++|.....+|.. ++++++|++|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECc
Confidence            4445555555443  445555555555555555554 45555555555555555553323344443 5555555555555


Q ss_pred             cccccc
Q 038576           93 QSPIQW   98 (411)
Q Consensus        93 ~~~~~~   98 (411)
                      +|.+.+
T Consensus       499 ~N~l~g  504 (623)
T PLN03150        499 GNSLSG  504 (623)
T ss_pred             CCcccc
Confidence            555443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.54  E-value=7e-08  Score=92.65  Aligned_cols=194  Identities=20%  Similarity=0.313  Sum_probs=137.9

Q ss_pred             EEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCC-CCCEEecCCCCCccccCcccccCCCCccEEEecccc
Q 038576           18 TLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLT-QLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSP   95 (411)
Q Consensus        18 ~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~-~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~   95 (411)
                      .++..++.+.. ...+..+..+..|++..+.++.+|...+.+. +|+.|++++ +.+..+|.. ++.+++|+.|+++.|.
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~-~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD-NKIESLPSP-LRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccc-cchhhhhhh-hhccccccccccCCch
Confidence            57888887744 6667777899999999999999999888885 999999999 799999755 8999999999999999


Q ss_pred             cccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCCccceeEEEecCC
Q 038576           96 IQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNG  175 (411)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~~~~  175 (411)
                      +..             .+.....++.|+.++++++....+|..+.....|+++.+..+.....+.               
T Consensus       175 l~~-------------l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~---------------  226 (394)
T COG4886         175 LSD-------------LPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLS---------------  226 (394)
T ss_pred             hhh-------------hhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecch---------------
Confidence            863             3344448899999999999999999877677779999887443111000               


Q ss_pred             cccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCCccC
Q 038576          176 ANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHL  255 (411)
Q Consensus       176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~  255 (411)
                                                 ....+.++..+      .+.+.. +... ......+++++.|++++ +.+...
T Consensus       227 ---------------------------~~~~~~~l~~l------~l~~n~-~~~~-~~~~~~l~~l~~L~~s~-n~i~~i  270 (394)
T COG4886         227 ---------------------------SLSNLKNLSGL------ELSNNK-LEDL-PESIGNLSNLETLDLSN-NQISSI  270 (394)
T ss_pred             ---------------------------hhhhccccccc------ccCCce-eeec-cchhccccccceecccc-cccccc
Confidence                                       01133444444      433332 2221 11234667788888887 344444


Q ss_pred             CCCCCCCCCcCeEeecCCCCCcc
Q 038576          256 VPSSTSFQNLTTLTVWGCHGMIN  278 (411)
Q Consensus       256 ~~~~~~~~~L~~L~l~~c~~l~~  278 (411)
                      ..... +.+++.|+++++.....
T Consensus       271 ~~~~~-~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         271 SSLGS-LTNLRELDLSGNSLSNA  292 (394)
T ss_pred             ccccc-cCccCEEeccCcccccc
Confidence            44333 78888888887765443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=2.2e-09  Score=93.53  Aligned_cols=59  Identities=20%  Similarity=0.195  Sum_probs=29.9

Q ss_pred             CccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeecc-CCcCCcccccCCCCcEEEEEecC
Q 038576           85 RLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQD-EKTLPRDLSFFKMLQRYRILIGD  154 (411)
Q Consensus        85 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~l~~~~~L~~L~i~~~~  154 (411)
                      .||++|++...++.           .....-+..+.+|+.+.+.+.. .+.+...++.-.+|+.|+++.++
T Consensus       186 Rlq~lDLS~s~it~-----------stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s  245 (419)
T KOG2120|consen  186 RLQHLDLSNSVITV-----------STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS  245 (419)
T ss_pred             hhHHhhcchhheeH-----------HHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc
Confidence            46666666655533           0122344455566666666555 33333445555556665555443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.49  E-value=1.1e-07  Score=64.77  Aligned_cols=56  Identities=27%  Similarity=0.443  Sum_probs=50.8

Q ss_pred             ccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCC
Q 038576           14 QNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKC   69 (411)
Q Consensus        14 ~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c   69 (411)
                      ++|++|++++|.++.  +..|.++++|++|++++|.++.+++ .+.++++|++|++++|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            378999999999998  4789999999999999999998875 6899999999999995

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.46  E-value=2.3e-08  Score=87.44  Aligned_cols=135  Identities=21%  Similarity=0.207  Sum_probs=107.0

Q ss_pred             hhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccE
Q 038576           10 LGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEE   88 (411)
Q Consensus        10 l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~   88 (411)
                      +.-.+.|+.+|+++|.++. -.++.-.+.+|.|+++.|++..+-. +..+++|+.||+++ +.+..+... =.++-|.+.
T Consensus       280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~Gw-h~KLGNIKt  356 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSG-NLLAECVGW-HLKLGNIKT  356 (490)
T ss_pred             cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeeccc-chhHhhhhh-HhhhcCEee
Confidence            4445678899999999888 6777778999999999999887754 88899999999999 677776533 458889999


Q ss_pred             EEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcC--CcccccCCCCcEEEEEecCCccccCc
Q 038576           89 LYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTL--PRDLSFFKMLQRYRILIGDSREYDAW  161 (411)
Q Consensus        89 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~l~~~~~L~~L~i~~~~~~~~~~~  161 (411)
                      |.+++|.+              ....++.++-+|..|++.+|++..+  ...+++++.|+++.+..+.....++.
T Consensus       357 L~La~N~i--------------E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  357 LKLAQNKI--------------ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             eehhhhhH--------------hhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence            99999876              4457788888999999999885544  34678999999998887665544443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=2.5e-08  Score=91.32  Aligned_cols=134  Identities=17%  Similarity=0.186  Sum_probs=97.7

Q ss_pred             hhhccccCcEEEecCCcCCC----CccccccccCcEEEeeCCccccchHH--hcCCCCCCEEecCCCCCccccCcccccC
Q 038576            9 SLGLLQNLQTLSLDDCELGD----MAIIGDLKKLVILALRGSDMEELAGE--IGQLTQLRLLNLSKCFELKVIPPNVISS   82 (411)
Q Consensus         9 ~l~~l~~L~~L~l~~~~l~~----~~~l~~l~~L~~L~L~~~~l~~lp~~--i~~l~~L~~L~L~~c~~~~~~~~~~l~~   82 (411)
                      -...|.+++.|||+.|-+..    ....+.+++|+.|+++.|++...-.+  -..+.+|+.|.++.|.--..--...+..
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~  220 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT  220 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence            46789999999999998776    25566899999999999987633221  2367899999999985432222223568


Q ss_pred             CCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCC--cccccCCCCcEEEEEecC
Q 038576           83 LSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLP--RDLSFFKMLQRYRILIGD  154 (411)
Q Consensus        83 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~i~~~~  154 (411)
                      +++|+.|++.+|....            ........+..|++|++++|....++  ..++.++.|+.|.++.+.
T Consensus       221 fPsl~~L~L~~N~~~~------------~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg  282 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIIL------------IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG  282 (505)
T ss_pred             CCcHHHhhhhcccccc------------eecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC
Confidence            8999999999995322            22345556778999999999877666  345677888888776444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.42  E-value=7.9e-08  Score=84.10  Aligned_cols=58  Identities=22%  Similarity=0.225  Sum_probs=27.2

Q ss_pred             hhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCC-ccceeEEEe
Q 038576          114 DELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDG-ISRISKLKL  172 (411)
Q Consensus       114 ~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~-~~~l~~L~~  172 (411)
                      ++++-+|+++.|+++.|.+..+.. +..+++|++|+++++.......|.. +.++..|.+
T Consensus       301 ESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  301 ESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence            444444555555555555444332 4445555555555444444444433 334444433

>PLN03150 hypothetical protein; Provisional

Probab=98.35  E-value=8.6e-07  Score=89.58  Aligned_cols=91  Identities=22%  Similarity=0.370  Sum_probs=78.6

Q ss_pred             CCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccc-cchHHhcCCCCCCEEecCCCCCccccCccccc
Q 038576            5 ALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDME-ELAGEIGQLTQLRLLNLSKCFELKVIPPNVIS   81 (411)
Q Consensus         5 ~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~   81 (411)
                      .+|..++++.+|+.|+|++|.+..  |..++.+++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++
T Consensus       433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~-l~  511 (623)
T PLN03150        433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA-LG  511 (623)
T ss_pred             cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChH-Hh
Confidence            578899999999999999999886  778999999999999999998 78999999999999999997666688876 55


Q ss_pred             C-CCCccEEEeccccc
Q 038576           82 S-LSRLEELYIGQSPI   96 (411)
Q Consensus        82 ~-L~~L~~L~l~~~~~   96 (411)
                      . ..++..+++.+|..
T Consensus       512 ~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        512 GRLLHRASFNFTDNAG  527 (623)
T ss_pred             hccccCceEEecCCcc
Confidence            4 45677888877753

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.24  E-value=1.7e-06  Score=54.15  Aligned_cols=40  Identities=33%  Similarity=0.434  Sum_probs=24.7

Q ss_pred             ccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccC
Q 038576           36 KKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIP   76 (411)
Q Consensus        36 ~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~   76 (411)
                      ++|++|++++|.|+++|+.+++|++|++|++++ +.+++++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~-N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSN-NPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETS-SCCSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecC-CCCCCCc
Confidence            356667777776666666666777777777776 3555554

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.22  E-value=1.4e-07  Score=90.95  Aligned_cols=128  Identities=23%  Similarity=0.326  Sum_probs=95.4

Q ss_pred             ccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEE
Q 038576           12 LLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELY   90 (411)
Q Consensus        12 ~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~   90 (411)
                      .+..++.++++.+.+.. ...++.+.+|..|++.++.|..+...+..+++|++|++++ +.++.+..  +..++.|+.|+
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~--l~~l~~L~~L~  146 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKLEG--LSTLTLLKELN  146 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccc-cccccccc--hhhccchhhhe
Confidence            45666667777777777 5667888888888888888887766577888888888888 78888775  77888888888


Q ss_pred             ecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc-cccCCCCcEEEEEecCCc
Q 038576           91 IGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRILIGDSR  156 (411)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~i~~~~~~  156 (411)
                      +.+|.+.              ....+..+..|+.+++++|....+... ...+.+++.+.+..+...
T Consensus       147 l~~N~i~--------------~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  147 LSGNLIS--------------DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             eccCcch--------------hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence            8888873              335566678888888888887666553 356777777777644433

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.14  E-value=6.5e-07  Score=80.05  Aligned_cols=248  Identities=16%  Similarity=0.111  Sum_probs=149.0

Q ss_pred             hhhccccCcEEEecCCcCCC------CccccccccCcEEEeeCC---ccc-cchHH-------hcCCCCCCEEecCCCCC
Q 038576            9 SLGLLQNLQTLSLDDCELGD------MAIIGDLKKLVILALRGS---DME-ELAGE-------IGQLTQLRLLNLSKCFE   71 (411)
Q Consensus         9 ~l~~l~~L~~L~l~~~~l~~------~~~l~~l~~L~~L~L~~~---~l~-~lp~~-------i~~l~~L~~L~L~~c~~   71 (411)
                      .+..+..+.+++++||.+..      -+.+.+.++|+.-+++.-   +.. .+|..       +..+++|++|+||+|..
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence            34567889999999999765      255667788999888874   333 55553       34677999999999533


Q ss_pred             ccccCc---ccccCCCCccEEEecccccccCcccccccc--ccccchhhccCCCCCCEEEEeeccCCcCCc-----cccc
Q 038576           72 LKVIPP---NVISSLSRLEELYIGQSPIQWGKVEGVDGE--RRNASLDELNNLSKLTSLEILIQDEKTLPR-----DLSF  141 (411)
Q Consensus        72 ~~~~~~---~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-----~l~~  141 (411)
                      -...+.   ..|+++.+|++|.+.+|.+.. .--...+.  .........++-++||.+....|+....+.     .+..
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~-~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~  183 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNNCGLGP-EAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS  183 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhcCCCCh-hHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence            222221   237789999999999997643 00000000  001133445667789999998888655443     3556


Q ss_pred             CCCCcEEEEEecCCccccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccc
Q 038576          142 FKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGI  221 (411)
Q Consensus       142 ~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l  221 (411)
                      .+.|+.+.+..+....                               +++.-+      ...+..+++|+.|      ++
T Consensus       184 ~~~leevr~~qN~I~~-------------------------------eG~~al------~eal~~~~~LevL------dl  220 (382)
T KOG1909|consen  184 HPTLEEVRLSQNGIRP-------------------------------EGVTAL------AEALEHCPHLEVL------DL  220 (382)
T ss_pred             ccccceEEEecccccC-------------------------------chhHHH------HHHHHhCCcceee------ec
Confidence            6788888876444220                               000000      0023467888888      88


Q ss_pred             cccccccc---cccccccCCCCCcEEEecCCcCCccC-CC----CCCCCCCcCeEeecCCCCCccccc--hHhhhccccc
Q 038576          222 NHRRELKQ---IFKQESSNAKDLEKLSIFMCDNLTHL-VP----SSTSFQNLTTLTVWGCHGMINVLT--SSTARSLVRL  291 (411)
Q Consensus       222 ~~~~~l~~---~~~~~~~~~~~L~~L~l~~c~~l~~~-~~----~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L  291 (411)
                      .++..-..   ........+++|++|++++|..-..- ..    .....|+|+.|.+.+|..-.+-..  ...+...|.|
T Consensus       221 ~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL  300 (382)
T KOG1909|consen  221 RDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDL  300 (382)
T ss_pred             ccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhh
Confidence            87653221   11222357788888888887543111 10    112377888888887765333110  1123446778


Q ss_pred             cEEeEcccc
Q 038576          292 RQMTIKVCV  300 (411)
Q Consensus       292 ~~L~l~~c~  300 (411)
                      +.|++++|.
T Consensus       301 ~kLnLngN~  309 (382)
T KOG1909|consen  301 EKLNLNGNR  309 (382)
T ss_pred             HHhcCCccc
Confidence            888888776

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.10  E-value=4.4e-06  Score=52.27  Aligned_cols=40  Identities=23%  Similarity=0.422  Sum_probs=34.3

Q ss_pred             ccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchH
Q 038576           14 QNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAG   53 (411)
Q Consensus        14 ~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~   53 (411)
                      ++|++|++++|.+++ ++.++++++|++|++++|.+++++.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            479999999999999 7779999999999999999987754

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.07  E-value=1.7e-05  Score=74.25  Aligned_cols=133  Identities=23%  Similarity=0.289  Sum_probs=74.4

Q ss_pred             cchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhh
Q 038576          207 FKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTAR  286 (411)
Q Consensus       207 ~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  286 (411)
                      +.+++.|      .+.+| .++.++.    -.++|++|.+++|.++...+...  .++|+.|++++|..++.++      
T Consensus        51 ~~~l~~L------~Is~c-~L~sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------  111 (426)
T PRK15386         51 ARASGRL------YIKDC-DIESLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------  111 (426)
T ss_pred             hcCCCEE------EeCCC-CCcccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------
Confidence            4667777      77777 4666552    34568888888887776554332  4578888888887665442      


Q ss_pred             ccccccEEeEccc--ccccccccccCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCC
Q 038576          287 SLVRLRQMTIKVC--VMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCP  364 (411)
Q Consensus       287 ~l~~L~~L~l~~c--~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~  364 (411)
                        ++|+.|++.+.  ..+..+                  -++|+.|.+.+....... ..+...   -++|++|.|.+|.
T Consensus       112 --~sLe~L~L~~n~~~~L~~L------------------PssLk~L~I~~~n~~~~~-~lp~~L---PsSLk~L~Is~c~  167 (426)
T PRK15386        112 --ESVRSLEIKGSATDSIKNV------------------PNGLTSLSINSYNPENQA-RIDNLI---SPSLKTLSLTGCS  167 (426)
T ss_pred             --cccceEEeCCCCCcccccC------------------cchHhheecccccccccc-cccccc---CCcccEEEecCCC
Confidence              45777776532  122222                  235666665432211111 011111   1567777777776


Q ss_pred             CCccccCCCCCCCCceEEEEe
Q 038576          365 NMKIFSEGELSTPKLQKVQMS  385 (411)
Q Consensus       365 ~l~~~p~~~~~~~~L~~l~l~  385 (411)
                      .+. +|..+  +++|+.|.+.
T Consensus       168 ~i~-LP~~L--P~SLk~L~ls  185 (426)
T PRK15386        168 NII-LPEKL--PESLQSITLH  185 (426)
T ss_pred             ccc-Ccccc--cccCcEEEec
Confidence            443 44433  5677777764

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.06  E-value=2e-06  Score=86.94  Aligned_cols=125  Identities=24%  Similarity=0.282  Sum_probs=91.3

Q ss_pred             ccCcEEEecCCc-CCC--Cccccc-cccCcEEEeeCCccc--cchHHhcCCCCCCEEecCCCCCccccCcccccCCCCcc
Q 038576           14 QNLQTLSLDDCE-LGD--MAIIGD-LKKLVILALRGSDME--ELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLE   87 (411)
Q Consensus        14 ~~L~~L~l~~~~-l~~--~~~l~~-l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~   87 (411)
                      .+||+|+++|.. +..  +..++. +|.|+.|.+.|-.+.  +.-....++++|..||+|+ .+++.+. + +++|++||
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl~-G-IS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNLS-G-ISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCcH-H-HhccccHH
Confidence            578999999876 433  555664 699999999987654  4455567899999999999 6788873 4 89999999


Q ss_pred             EEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc-------cccCCCCcEEEEEe
Q 038576           88 ELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-------LSFFKMLQRYRILI  152 (411)
Q Consensus        88 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-------l~~~~~L~~L~i~~  152 (411)
                      .|.+.+-.+..           .....++-+|++|+.||++.......+..       -..+++|+.|+.++
T Consensus       199 ~L~mrnLe~e~-----------~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  199 VLSMRNLEFES-----------YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             HHhccCCCCCc-----------hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            99887766532           14567888899999999987664333321       13477888888763

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.95  E-value=3.3e-05  Score=72.35  Aligned_cols=119  Identities=18%  Similarity=0.279  Sum_probs=80.9

Q ss_pred             cCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCC
Q 038576          236 SNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDN  315 (411)
Q Consensus       236 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~  315 (411)
                      ..+++++.|++++| .+..++.   ..++|+.|.+.+|..++.++. . +  .++|++|++.+|.++..+          
T Consensus        49 ~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~-~-L--P~nLe~L~Ls~Cs~L~sL----------  110 (426)
T PRK15386         49 EEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPG-S-I--PEGLEKLTVCHCPEISGL----------  110 (426)
T ss_pred             HHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCc-h-h--hhhhhheEccCccccccc----------
Confidence            34688999999998 6666552   145799999999999887743 1 1  468999999999877655          


Q ss_pred             ccCccccccCCCCeeecCC--CcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCCCceEEEEeccccch
Q 038576          316 YAAQDEIVFSELKELNLSN--LQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMSLVDEKL  391 (411)
Q Consensus       316 ~~~~~~~~~~~L~~L~l~~--c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~~~c~~l  391 (411)
                              -+.|+.|++..  |..+..+          .++|+.|.+.++......+.....+++|+.|.+. +|...
T Consensus       111 --------P~sLe~L~L~~n~~~~L~~L----------PssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is-~c~~i  169 (426)
T PRK15386        111 --------PESVRSLEIKGSATDSIKNV----------PNGLTSLSINSYNPENQARIDNLISPSLKTLSLT-GCSNI  169 (426)
T ss_pred             --------ccccceEEeCCCCCcccccC----------cchHhheeccccccccccccccccCCcccEEEec-CCCcc
Confidence                    34577777753  2233333          2688999886544322211112357899999997 67654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.87  E-value=3.5e-06  Score=81.30  Aligned_cols=108  Identities=26%  Similarity=0.330  Sum_probs=90.7

Q ss_pred             hhccccCcEEEecCCcCCCCcc-ccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccE
Q 038576           10 LGLLQNLQTLSLDDCELGDMAI-IGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEE   88 (411)
Q Consensus        10 l~~l~~L~~L~l~~~~l~~~~~-l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~   88 (411)
                      +..+++|.+|++.+|.++.... +..+.+|++|++++|.|+.+. .+..++.|+.|++++ +.+..+..  +..+++|+.
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~-N~i~~~~~--~~~l~~L~~  166 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSG-NLISDISG--LESLKSLKL  166 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheecc-CcchhccC--Cccchhhhc
Confidence            6778999999999999999555 899999999999999999874 477888899999999 78888875  778999999


Q ss_pred             EEecccccccCccccccccccccchhh--ccCCCCCCEEEEeeccCCcC
Q 038576           89 LYIGQSPIQWGKVEGVDGERRNASLDE--LNNLSKLTSLEILIQDEKTL  135 (411)
Q Consensus        89 L~l~~~~~~~~~~~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~  135 (411)
                      +++++|.+..  +            ..  +..+.+++.+.+.++....+
T Consensus       167 l~l~~n~i~~--i------------e~~~~~~~~~l~~l~l~~n~i~~i  201 (414)
T KOG0531|consen  167 LDLSYNRIVD--I------------ENDELSELISLEELDLGGNSIREI  201 (414)
T ss_pred             ccCCcchhhh--h------------hhhhhhhccchHHHhccCCchhcc
Confidence            9999998753  1            22  57788888888888765544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.86  E-value=9.5e-06  Score=71.28  Aligned_cols=101  Identities=25%  Similarity=0.373  Sum_probs=62.5

Q ss_pred             cEEEecCCcCCC---Ccccc-ccccCcEEEeeCCccc---cchHHhcCCCCCCEEecCCCCCccccCcccc-cCCCCccE
Q 038576           17 QTLSLDDCELGD---MAIIG-DLKKLVILALRGSDME---ELAGEIGQLTQLRLLNLSKCFELKVIPPNVI-SSLSRLEE   88 (411)
Q Consensus        17 ~~L~l~~~~l~~---~~~l~-~l~~L~~L~L~~~~l~---~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l-~~L~~L~~   88 (411)
                      ..|.+.++.+..   ...|+ .++.++.|||.+|.|+   ++...+.+|+.|+.|+++.| .+...-.. + ..+.+|+.
T Consensus        48 ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~-lp~p~~nl~~  125 (418)
T KOG2982|consen   48 ELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKS-LPLPLKNLRV  125 (418)
T ss_pred             hhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCcccc-CcccccceEE
Confidence            355555665554   23343 3578888888888776   56666778888888888874 33321111 2 25568888


Q ss_pred             EEecccccccCccccccccccccchhhccCCCCCCEEEEeec
Q 038576           89 LYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQ  130 (411)
Q Consensus        89 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  130 (411)
                      +.+.++...|.           ..-..+..+|++++++++.|
T Consensus       126 lVLNgT~L~w~-----------~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  126 LVLNGTGLSWT-----------QSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             EEEcCCCCChh-----------hhhhhhhcchhhhhhhhccc
Confidence            88888877660           11244556666666666544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.71  E-value=6.6e-07  Score=87.23  Aligned_cols=111  Identities=25%  Similarity=0.237  Sum_probs=85.7

Q ss_pred             hhhhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCCCCccccCcccccCCCCc
Q 038576            8 SSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVIPPNVISSLSRL   86 (411)
Q Consensus         8 ~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L   86 (411)
                      +++.-+..|+.|+|+.|++++...+..+++|++|||+.|.+..+|.. ...+. |+.|.+++ +.++.+-.  |.+|.+|
T Consensus       181 ~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn-N~l~tL~g--ie~LksL  256 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN-NALTTLRG--IENLKSL  256 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecc-cHHHhhhh--HHhhhhh
Confidence            45666778999999999998877888899999999999988877753 23344 99999999 78888764  8899999


Q ss_pred             cEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCC
Q 038576           87 EELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEK  133 (411)
Q Consensus        87 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  133 (411)
                      +.||+++|-+..           -..+.-+..+..|+.|.+.||...
T Consensus       257 ~~LDlsyNll~~-----------hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  257 YGLDLSYNLLSE-----------HSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hccchhHhhhhc-----------chhhhHHHHHHHHHHHhhcCCccc
Confidence            999999987643           022345556667888888887643

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.70  E-value=2e-06  Score=84.03  Aligned_cols=90  Identities=18%  Similarity=0.206  Sum_probs=55.6

Q ss_pred             CCccccCcccccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEE
Q 038576           70 FELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYR  149 (411)
Q Consensus        70 ~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~  149 (411)
                      +.++.+... +.-+++|++||+++|.+..              ...+..+++|++||+++|....+|..-..-..|+.|.
T Consensus       174 N~L~~mD~S-Lqll~ale~LnLshNk~~~--------------v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~  238 (1096)
T KOG1859|consen  174 NRLVLMDES-LQLLPALESLNLSHNKFTK--------------VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLN  238 (1096)
T ss_pred             hhHHhHHHH-HHHHHHhhhhccchhhhhh--------------hHHHHhcccccccccccchhccccccchhhhhheeee
Confidence            556666555 6677788888888877642              2467777788888888877777765322223377777


Q ss_pred             EEecCCccccCcCCccceeEEEecC
Q 038576          150 ILIGDSREYDAWDGISRISKLKLTN  174 (411)
Q Consensus       150 i~~~~~~~~~~~~~~~~l~~L~~~~  174 (411)
                      +.++...+.-+...+.++..|+++.
T Consensus       239 lrnN~l~tL~gie~LksL~~LDlsy  263 (1096)
T KOG1859|consen  239 LRNNALTTLRGIENLKSLYGLDLSY  263 (1096)
T ss_pred             ecccHHHhhhhHHhhhhhhccchhH
Confidence            7766655444433344444444433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.70  E-value=4.6e-06  Score=82.24  Aligned_cols=36  Identities=25%  Similarity=0.277  Sum_probs=18.5

Q ss_pred             CCCCCEEecCCCCCccccC-cccccCCCCccEEEecc
Q 038576           58 LTQLRLLNLSKCFELKVIP-PNVISSLSRLEELYIGQ   93 (411)
Q Consensus        58 l~~L~~L~L~~c~~~~~~~-~~~l~~L~~L~~L~l~~   93 (411)
                      +++|+.|.+.+|..+.+.. ......+++|+.|++++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG  223 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence            5556666666555555421 11144556666666654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.67  E-value=6e-06  Score=81.39  Aligned_cols=42  Identities=26%  Similarity=0.286  Sum_probs=24.5

Q ss_pred             cccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCcee
Q 038576          290 RLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSF  341 (411)
Q Consensus       290 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  341 (411)
                      .++.|++..|...+........          .....++.+++.+|+.+...
T Consensus       402 ~l~~L~l~~~~~~t~~~l~~~~----------~~~~~~~~l~~~~~~~~~~~  443 (482)
T KOG1947|consen  402 SLRVLNLSDCRLVTDKGLRCLA----------DSCSNLKDLDLSGCRVITLK  443 (482)
T ss_pred             ccceEecccCccccccchHHHh----------hhhhccccCCccCcccccch
Confidence            3777777777655444322111          01566777777777776665

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.61  E-value=3.7e-05  Score=77.97  Aligned_cols=112  Identities=19%  Similarity=0.263  Sum_probs=81.1

Q ss_pred             ccccCcEEEecCCcCCC---CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccC-cccccCCCCcc
Q 038576           12 LLQNLQTLSLDDCELGD---MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIP-PNVISSLSRLE   87 (411)
Q Consensus        12 ~l~~L~~L~l~~~~l~~---~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~-~~~l~~L~~L~   87 (411)
                      .++.||.|.++|-.+..   .....++++|+.||+++++++.+ .+++++++||.|.+.+ -.+..-. -..+-.|++|+
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn-Le~e~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRN-LEFESYQDLIDLFNLKKLR  223 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccC-CCCCchhhHHHHhcccCCC
Confidence            45899999999977655   34456789999999999999988 7799999999999987 4444322 11266899999


Q ss_pred             EEEecccccccCccccccccccccchhhccCCCCCCEEEEeecc
Q 038576           88 ELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQD  131 (411)
Q Consensus        88 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  131 (411)
                      .||++........      .-...-.+--..+|+||.||.+++.
T Consensus       224 vLDIS~~~~~~~~------~ii~qYlec~~~LpeLrfLDcSgTd  261 (699)
T KOG3665|consen  224 VLDISRDKNNDDT------KIIEQYLECGMVLPELRFLDCSGTD  261 (699)
T ss_pred             eeeccccccccch------HHHHHHHHhcccCccccEEecCCcc
Confidence            9999987643300      0000112333458999999999876

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.60  E-value=2.4e-05  Score=68.87  Aligned_cols=94  Identities=18%  Similarity=0.221  Sum_probs=51.4

Q ss_pred             CCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCceec
Q 038576          263 QNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFS  342 (411)
Q Consensus       263 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  342 (411)
                      +.+++++...|.-..-.-......-||++..+.+..|+ +++.......          -.+|.+-.|.+.. .++.+|.
T Consensus       173 ~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~s----------e~~p~~~~LnL~~-~~idswa  240 (418)
T KOG2982|consen  173 TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGS----------EPFPSLSCLNLGA-NNIDSWA  240 (418)
T ss_pred             hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccC----------CCCCcchhhhhcc-cccccHH
Confidence            45666666666443222222334567888888887777 5555443322          2466666666665 3566652


Q ss_pred             cCCCcccccCCCcceEeecCCCCCcccc
Q 038576          343 CSGNNCAFKFPSLERLVVNRCPNMKIFS  370 (411)
Q Consensus       343 ~~~~~~~~~~~~L~~L~i~~C~~l~~~p  370 (411)
                       +..+. -.||+|..|++..-|-...+.
T Consensus       241 -svD~L-n~f~~l~dlRv~~~Pl~d~l~  266 (418)
T KOG2982|consen  241 -SVDAL-NGFPQLVDLRVSENPLSDPLR  266 (418)
T ss_pred             -HHHHH-cCCchhheeeccCCccccccc
Confidence             21121 346778777777765444443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.53  E-value=3.9e-05  Score=66.43  Aligned_cols=82  Identities=24%  Similarity=0.302  Sum_probs=41.2

Q ss_pred             ccccCcEEEecCCcCCCCccccccccCcEEEeeCC--ccc-cchHHhcCCCCCCEEecCCCCCcccc---CcccccCCCC
Q 038576           12 LLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGS--DME-ELAGEIGQLTQLRLLNLSKCFELKVI---PPNVISSLSR   85 (411)
Q Consensus        12 ~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~--~l~-~lp~~i~~l~~L~~L~L~~c~~~~~~---~~~~l~~L~~   85 (411)
                      .+..|+.|++.++.++....+-.+++|++|.++.|  ++. .++..+.++++|++|++++ ++++.+   +.  +..+.+
T Consensus        41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~p--l~~l~n  117 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRP--LKELEN  117 (260)
T ss_pred             cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccch--hhhhcc
Confidence            34455555555555554444455556666666655  333 4444444456666666665 344332   21  344555


Q ss_pred             ccEEEeccccc
Q 038576           86 LEELYIGQSPI   96 (411)
Q Consensus        86 L~~L~l~~~~~   96 (411)
                      |..|++..|..
T Consensus       118 L~~Ldl~n~~~  128 (260)
T KOG2739|consen  118 LKSLDLFNCSV  128 (260)
T ss_pred             hhhhhcccCCc
Confidence            55555555543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.47  E-value=7.8e-06  Score=63.57  Aligned_cols=62  Identities=16%  Similarity=0.346  Sum_probs=29.4

Q ss_pred             cccccCcEEEeeCCccccchHHhc-CCCCCCEEecCCCCCccccCcccccCCCCccEEEeccccc
Q 038576           33 GDLKKLVILALRGSDMEELAGEIG-QLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPI   96 (411)
Q Consensus        33 ~~l~~L~~L~L~~~~l~~lp~~i~-~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~   96 (411)
                      ....+|...+|++|.+...|..+. +.+....|++++ +.+.++|.+ +..++.|+.++++.|++
T Consensus        50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE-~Aam~aLr~lNl~~N~l  112 (177)
T KOG4579|consen   50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEE-LAAMPALRSLNLRFNPL  112 (177)
T ss_pred             hCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHH-HhhhHHhhhcccccCcc
Confidence            334444444555555554444433 233445555554 445555544 44555555555554443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.46  E-value=0.00026  Score=58.97  Aligned_cols=103  Identities=22%  Similarity=0.275  Sum_probs=57.6

Q ss_pred             ccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccccccCccccccccccccchhh
Q 038576           36 KKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDE  115 (411)
Q Consensus        36 ~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  115 (411)
                      .+...+|++.|.+..++ .+..++.|.+|.+++ +.++++....-.-+++|+.|.+.+|.+..           ......
T Consensus        42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNsi~~-----------l~dl~p  108 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNSIQE-----------LGDLDP  108 (233)
T ss_pred             cccceecccccchhhcc-cCCCccccceEEecC-CcceeeccchhhhccccceEEecCcchhh-----------hhhcch
Confidence            35566666666555443 255666667776666 56666655533345567777776666532           123345


Q ss_pred             ccCCCCCCEEEEeeccCCcCCc----ccccCCCCcEEEEE
Q 038576          116 LNNLSKLTSLEILIQDEKTLPR----DLSFFKMLQRYRIL  151 (411)
Q Consensus       116 l~~l~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~i~  151 (411)
                      +..+++|++|.+-+|....-+.    .+..+++|+.|+..
T Consensus       109 La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  109 LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             hccCCccceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence            5566666666666665333221    23455666666543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.42  E-value=0.00024  Score=59.20  Aligned_cols=105  Identities=21%  Similarity=0.330  Sum_probs=81.2

Q ss_pred             cCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhc-CCCCCCEEecCCCCCccccCc-ccccCCCCccEEEec
Q 038576           15 NLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIG-QLTQLRLLNLSKCFELKVIPP-NVISSLSRLEELYIG   92 (411)
Q Consensus        15 ~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~-~l~~L~~L~L~~c~~~~~~~~-~~l~~L~~L~~L~l~   92 (411)
                      +...+||++|.+...+.|..++.|.+|.+..|+|+.+.+.+. .+++|+.|.+.+ +.+.++.+ .-+..++.|++|.+-
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCccceeeec
Confidence            456789999998888888899999999999999998877776 467899999999 56666532 116789999999999


Q ss_pred             ccccccCccccccccccccchhhccCCCCCCEEEEee
Q 038576           93 QSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILI  129 (411)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  129 (411)
                      +|++.. .-.        --.-.+..+++|+.||...
T Consensus       122 ~Npv~~-k~~--------YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  122 GNPVEH-KKN--------YRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             CCchhc-ccC--------ceeEEEEecCcceEeehhh
Confidence            998754 100        1123456789999999865

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.28  E-value=2.3e-05  Score=61.01  Aligned_cols=103  Identities=19%  Similarity=0.231  Sum_probs=84.7

Q ss_pred             cccCcEEEeeCCccccchH---HhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccccccCcccccccccccc
Q 038576           35 LKKLVILALRGSDMEELAG---EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNA  111 (411)
Q Consensus        35 l~~L~~L~L~~~~l~~lp~---~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~  111 (411)
                      ...+..++|+.|.+..++.   .+...++|...++++ +.++++|..+-.+.+.+..+++++|.+.             .
T Consensus        26 akE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~neis-------------d   91 (177)
T KOG4579|consen   26 AKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANNEIS-------------D   91 (177)
T ss_pred             HHHhhhcccccchhhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcchhhhh-------------h
Confidence            4567889999997775554   455677888889999 7999999885567779999999999886             3


Q ss_pred             chhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEE
Q 038576          112 SLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRIL  151 (411)
Q Consensus       112 ~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~  151 (411)
                      .+.++..++.|+.+++..|.+...|..+..+.++-.|+.-
T Consensus        92 vPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   92 VPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             chHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence            5688999999999999999999999888777777777654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.14  E-value=1.5e-05  Score=69.32  Aligned_cols=83  Identities=25%  Similarity=0.414  Sum_probs=64.9

Q ss_pred             ccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCc-ccccCCCCccEEE
Q 038576           12 LLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPP-NVISSLSRLEELY   90 (411)
Q Consensus        12 ~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~-~~l~~L~~L~~L~   90 (411)
                      .+.+.+.|+..||++.+.....+++.|++|.|+-|+|+.+.+ +..|++|+.|+|+. +.+.++.. .-+.++++|+.|.
T Consensus        17 dl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHh
Confidence            356778889999998887777888899999999998887743 77888999999988 67777653 1256788888888


Q ss_pred             eccccc
Q 038576           91 IGQSPI   96 (411)
Q Consensus        91 l~~~~~   96 (411)
                      +..|+-
T Consensus        95 L~ENPC  100 (388)
T KOG2123|consen   95 LDENPC  100 (388)
T ss_pred             hccCCc
Confidence            877753

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.01  E-value=0.00026  Score=63.75  Aligned_cols=155  Identities=19%  Similarity=0.225  Sum_probs=92.7

Q ss_pred             hhhccccCcEEEecCCc---CCC--C-------ccccccccCcEEEeeCCccc--c---chHHhcCCCCCCEEecCCCCC
Q 038576            9 SLGLLQNLQTLSLDDCE---LGD--M-------AIIGDLKKLVILALRGSDME--E---LAGEIGQLTQLRLLNLSKCFE   71 (411)
Q Consensus         9 ~l~~l~~L~~L~l~~~~---l~~--~-------~~l~~l~~L~~L~L~~~~l~--~---lp~~i~~l~~L~~L~L~~c~~   71 (411)
                      .+.+-++|+..++++-.   +..  |       +.+..+++|++||||.|-|.  .   +-..+..+..|++|.|.+|. 
T Consensus        53 ~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-  131 (382)
T KOG1909|consen   53 VLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-  131 (382)
T ss_pred             HHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-
Confidence            35556678888877643   222  3       22345668888888888554  2   22346678888888888863 


Q ss_pred             ccccCcc-------------cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCc----
Q 038576           72 LKVIPPN-------------VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKT----  134 (411)
Q Consensus        72 ~~~~~~~-------------~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~----  134 (411)
                      +......             .+++-+.|+.+..++|....+...        .....+...+.|+.+.++.|.+..    
T Consensus       132 lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~--------~~A~~~~~~~~leevr~~qN~I~~eG~~  203 (382)
T KOG1909|consen  132 LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGAT--------ALAEAFQSHPTLEEVRLSQNGIRPEGVT  203 (382)
T ss_pred             CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHH--------HHHHHHHhccccceEEEecccccCchhH
Confidence            2211111             144567788888888765431111        334566667788888888776321    


Q ss_pred             -CCcccccCCCCcEEEEEecCCcc---------ccCcCCccceeEEEecCC
Q 038576          135 -LPRDLSFFKMLQRYRILIGDSRE---------YDAWDGISRISKLKLTNG  175 (411)
Q Consensus       135 -~~~~l~~~~~L~~L~i~~~~~~~---------~~~~~~~~~l~~L~~~~~  175 (411)
                       +...+..+++|+.|++..+....         ++.|   ..++.+++.+|
T Consensus       204 al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~---~~L~El~l~dc  251 (382)
T KOG1909|consen  204 ALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW---PHLRELNLGDC  251 (382)
T ss_pred             HHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc---chheeeccccc
Confidence             22335678888888887665432         3333   35677776664

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.78  E-value=6.2e-05  Score=65.67  Aligned_cols=100  Identities=22%  Similarity=0.324  Sum_probs=78.8

Q ss_pred             cccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccccccCccccccccccccchh
Q 038576           35 LKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLD  114 (411)
Q Consensus        35 l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  114 (411)
                      +.+.+.|+.-||.+.++. .+.+|+.|++|.|+- ++++.+..  +..|++|+.|+|..|.|..           ..-+.
T Consensus        18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSv-NkIssL~p--l~rCtrLkElYLRkN~I~s-----------ldEL~   82 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSV-NKISSLAP--LQRCTRLKELYLRKNCIES-----------LDELE   82 (388)
T ss_pred             HHHhhhhcccCCCccHHH-HHHhcccceeEEeec-cccccchh--HHHHHHHHHHHHHhccccc-----------HHHHH
Confidence            567788899999998773 467999999999999 78999876  8999999999999998742           24467


Q ss_pred             hccCCCCCCEEEEeeccCC-cCC-----cccccCCCCcEEE
Q 038576          115 ELNNLSKLTSLEILIQDEK-TLP-----RDLSFFKMLQRYR  149 (411)
Q Consensus       115 ~l~~l~~L~~L~l~~~~~~-~~~-----~~l~~~~~L~~L~  149 (411)
                      .+.++++|+.|.+..|... .-+     ..+.-+++|++|+
T Consensus        83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            7889999999999887622 111     1245678888885

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.76  E-value=0.0044  Score=48.94  Aligned_cols=104  Identities=14%  Similarity=0.244  Sum_probs=60.0

Q ss_pred             hhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCC
Q 038576            8 SSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLS   84 (411)
Q Consensus         8 ~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~   84 (411)
                      ..|.++.+|+.+.+.. .++.  ...|.++.+|+.+.+.++ +..++. .+.++++++.+.+.+  .+..++...+..++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-T
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccc
Confidence            3478888999999875 4555  466788888999998875 666654 367787899998865  56666666677889


Q ss_pred             CccEEEecccccccCccccccccccccchhhccCCCCCCEEEEee
Q 038576           85 RLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILI  129 (411)
Q Consensus        85 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  129 (411)
                      +|+.+++..+ +..            -....+.+. +|+.+.+..
T Consensus        82 ~l~~i~~~~~-~~~------------i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   82 NLKNIDIPSN-ITE------------IGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TECEEEETTT--BE------------EHTTTTTT--T--EEE-TT
T ss_pred             cccccccCcc-ccE------------EchhhhcCC-CceEEEECC
Confidence            9999988654 221            122556666 777777654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.62  E-value=0.001  Score=58.15  Aligned_cols=141  Identities=18%  Similarity=0.237  Sum_probs=90.7

Q ss_pred             hhhccccCcEEEecCCcCCC--Cc----cccccccCcEEEeeCC---ccc-cchH-------HhcCCCCCCEEecCCCCC
Q 038576            9 SLGLLQNLQTLSLDDCELGD--MA----IIGDLKKLVILALRGS---DME-ELAG-------EIGQLTQLRLLNLSKCFE   71 (411)
Q Consensus         9 ~l~~l~~L~~L~l~~~~l~~--~~----~l~~l~~L~~L~L~~~---~l~-~lp~-------~i~~l~~L~~L~L~~c~~   71 (411)
                      .+..+..+..++||||.+..  ..    .+.+-.+|+.-+++.-   +.. .+|.       .+-+|++|+..+||+|..
T Consensus        25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            34457788899999999876  33    3445578888877763   222 3443       456889999999999655


Q ss_pred             ccccCcc---cccCCCCccEEEecccccccCccccccccccc------cchhhccCCCCCCEEEEeeccCCcCCcc----
Q 038576           72 LKVIPPN---VISSLSRLEELYIGQSPIQWGKVEGVDGERRN------ASLDELNNLSKLTSLEILIQDEKTLPRD----  138 (411)
Q Consensus        72 ~~~~~~~---~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~------~~~~~l~~l~~L~~L~l~~~~~~~~~~~----  138 (411)
                      -...|..   .|++-+.|++|.+++|..-.  +.   +.+..      +.-+...+-|.|+.+....|+....+..    
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp--~a---G~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~  179 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGLGP--IA---GGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAA  179 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCCCc--cc---hhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHH
Confidence            4444432   36788899999999886532  11   11111      2223345667889988888886666543    


Q ss_pred             -cccCCCCcEEEEEecC
Q 038576          139 -LSFFKMLQRYRILIGD  154 (411)
Q Consensus       139 -l~~~~~L~~L~i~~~~  154 (411)
                       +....+|+.+.|..+.
T Consensus       180 ~l~sh~~lk~vki~qNg  196 (388)
T COG5238         180 LLESHENLKEVKIQQNG  196 (388)
T ss_pred             HHHhhcCceeEEeeecC
Confidence             2334577777776444

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.60  E-value=0.001  Score=34.62  Aligned_cols=21  Identities=19%  Similarity=0.447  Sum_probs=12.6

Q ss_pred             cCcEEEeeCCccccchHHhcC
Q 038576           37 KLVILALRGSDMEELAGEIGQ   57 (411)
Q Consensus        37 ~L~~L~L~~~~l~~lp~~i~~   57 (411)
                      +|++|++++|+++.+|+.+++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            356666666666666655543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.30  E-value=0.0018  Score=56.29  Aligned_cols=110  Identities=18%  Similarity=0.209  Sum_probs=73.1

Q ss_pred             ccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCC--ccccCcccccCCCCccEEEecccccccCcccccccccc
Q 038576           32 IGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFE--LKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERR  109 (411)
Q Consensus        32 l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~--~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~  109 (411)
                      ...+.+|+.|++.++.++.+. .+-.|++|++|.++.++.  ...++.- ..++++|+++++++|.+..   .       
T Consensus        39 ~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~---l-------  106 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKD---L-------  106 (260)
T ss_pred             cccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCcccc---c-------
Confidence            445677888888887766442 355788999999999622  3333332 4567999999999998852   1       


Q ss_pred             ccchhhccCCCCCCEEEEeeccCCcCCc----ccccCCCCcEEEEEecC
Q 038576          110 NASLDELNNLSKLTSLEILIQDEKTLPR----DLSFFKMLQRYRILIGD  154 (411)
Q Consensus       110 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~i~~~~  154 (411)
                       .....+..+++|..|++..|.....-.    .+.-+++|..|+-....
T Consensus       107 -stl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  107 -STLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             -cccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence             445677778888889988887444321    23345777777654333

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.71  E-value=0.0014  Score=54.82  Aligned_cols=69  Identities=14%  Similarity=0.252  Sum_probs=43.5

Q ss_pred             cCCCCCcEEEecCCcCCccCC--CCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEccccccccc
Q 038576          236 SNAKDLEKLSIFMCDNLTHLV--PSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEI  305 (411)
Q Consensus       236 ~~~~~L~~L~l~~c~~l~~~~--~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  305 (411)
                      ..++.++.|.+.+|..+.++-  -.....++|+.|+|++|+.+++. ....+..+++|+.|.+.+.+.+...
T Consensus       122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v~~~  192 (221)
T KOG3864|consen  122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYVANL  192 (221)
T ss_pred             hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhhhch
Confidence            455666677777776663321  11123678888888888888776 3445677777777777776544333

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.29  E-value=0.0025  Score=53.30  Aligned_cols=34  Identities=24%  Similarity=0.228  Sum_probs=15.5

Q ss_pred             CCCCEEecCCCCCccccCcccccCCCCccEEEec
Q 038576           59 TQLRLLNLSKCFELKVIPPNVISSLSRLEELYIG   92 (411)
Q Consensus        59 ~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~   92 (411)
                      ++|+.|++++|..+++-....+.++++|+.|++.
T Consensus       151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~  184 (221)
T KOG3864|consen  151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY  184 (221)
T ss_pred             cchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence            4444555554444444433334444444444443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.05  E-value=0.015  Score=27.94  Aligned_cols=15  Identities=27%  Similarity=0.392  Sum_probs=5.6

Q ss_pred             cCcEEEeeCCccccc
Q 038576           37 KLVILALRGSDMEEL   51 (411)
Q Consensus        37 ~L~~L~L~~~~l~~l   51 (411)
                      +|+.|++++|+++.+
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            344455555444443

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.78  E-value=0.013  Score=30.41  Aligned_cols=21  Identities=29%  Similarity=0.377  Sum_probs=16.8

Q ss_pred             cCcEEEecCCcCCC-Ccccccc
Q 038576           15 NLQTLSLDDCELGD-MAIIGDL   35 (411)
Q Consensus        15 ~L~~L~l~~~~l~~-~~~l~~l   35 (411)
                      +|++|++++|.++. |+.|+++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT-
T ss_pred             CccEEECCCCcCEeCChhhcCC
Confidence            58999999999988 7667653

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.63  E-value=0.0026  Score=54.34  Aligned_cols=87  Identities=14%  Similarity=0.070  Sum_probs=69.6

Q ss_pred             hhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCcc
Q 038576            9 SLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLE   87 (411)
Q Consensus         9 ~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~   87 (411)
                      .+......+.||++.+.+.. -..|+-++.|..||++.+.+..+|..++.+..++.+++.. ++....|.+ .+++++++
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s-~~k~~~~k  114 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKS-QKKEPHPK  114 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCcc-ccccCCcc
Confidence            45666778888888888777 5667777888888888888888888888888888888777 678888877 88888888


Q ss_pred             EEEecccccc
Q 038576           88 ELYIGQSPIQ   97 (411)
Q Consensus        88 ~L~l~~~~~~   97 (411)
                      +++..++.+.
T Consensus       115 ~~e~k~~~~~  124 (326)
T KOG0473|consen  115 KNEQKKTEFF  124 (326)
T ss_pred             hhhhccCcch
Confidence            8888887653

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.38  E-value=0.26  Score=38.67  Aligned_cols=103  Identities=16%  Similarity=0.211  Sum_probs=51.4

Q ss_pred             ccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccccccCccccccccc
Q 038576           30 AIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGER  108 (411)
Q Consensus        30 ~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~  108 (411)
                      ..|.++.+|+.+.+.. .+..++. .+.++++|+.+.+.+  .+..++..++..+++++.+.+..+.. .          
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~~~~-~----------   71 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPNNLK-S----------   71 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETSTT--E----------
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhcccccccccccccc--cccccceeeeeccccccccccccccc-c----------
Confidence            3466677888888775 4555554 366777888888876  37777776677887888888865321 1          


Q ss_pred             cccchhhccCCCCCCEEEEeeccCCcCCc-ccccCCCCcEEEE
Q 038576          109 RNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRI  150 (411)
Q Consensus       109 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i  150 (411)
                        .....+..+++|+.+.+..+ ...++. .+..+ +++.+.+
T Consensus        72 --i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~  110 (129)
T PF13306_consen   72 --IGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINI  110 (129)
T ss_dssp             --E-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-
T ss_pred             --cccccccccccccccccCcc-ccEEchhhhcCC-CceEEEE
Confidence              12245566777777777543 222322 23333 5665544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=92.17  E-value=0.099  Score=46.10  Aligned_cols=156  Identities=18%  Similarity=0.205  Sum_probs=94.2

Q ss_pred             hhhhccccCcEEEecCCcC---CC--C-------ccccccccCcEEEeeCCccc-cch----HHhcCCCCCCEEecCCCC
Q 038576            8 SSLGLLQNLQTLSLDDCEL---GD--M-------AIIGDLKKLVILALRGSDME-ELA----GEIGQLTQLRLLNLSKCF   70 (411)
Q Consensus         8 ~~l~~l~~L~~L~l~~~~l---~~--~-------~~l~~l~~L~~L~L~~~~l~-~lp----~~i~~l~~L~~L~L~~c~   70 (411)
                      ..+.+-.+|+..++++-..   .+  +       +.+-+|++|+..+|+.|-|. ..|    ..|++-+.|.+|.+++| 
T Consensus        52 ~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-  130 (388)
T COG5238          52 NVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-  130 (388)
T ss_pred             HHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-
Confidence            3456667888888877532   22  2       34557888888888888655 332    35677788888888885 


Q ss_pred             CccccCccc-------------ccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcC--
Q 038576           71 ELKVIPPNV-------------ISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTL--  135 (411)
Q Consensus        71 ~~~~~~~~~-------------l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--  135 (411)
                      .+.-+..+-             .+.-|.|+.+....|.+..+...        .....+..-..|.++.+..|.+..-  
T Consensus       131 GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~--------~~a~~l~sh~~lk~vki~qNgIrpegv  202 (388)
T COG5238         131 GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKE--------LSAALLESHENLKEVKIQQNGIRPEGV  202 (388)
T ss_pred             CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHH--------HHHHHHHhhcCceeEEeeecCcCcchh
Confidence            443322111             23457788888888765431111        1223344446788888888764321  


Q ss_pred             ----CcccccCCCCcEEEEEecCCcc---------ccCcCCccceeEEEecCC
Q 038576          136 ----PRDLSFFKMLQRYRILIGDSRE---------YDAWDGISRISKLKLTNG  175 (411)
Q Consensus       136 ----~~~l~~~~~L~~L~i~~~~~~~---------~~~~~~~~~l~~L~~~~~  175 (411)
                          --.+..+++|+.|++..+..+.         .++|..   +++|.+.+|
T Consensus       203 ~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~---lrEL~lnDC  252 (388)
T COG5238         203 TMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL---LRELRLNDC  252 (388)
T ss_pred             HHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch---hhhccccch
Confidence                1123567889999988765432         345533   566666554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.34  E-value=0.21  Score=26.82  Aligned_cols=18  Identities=22%  Similarity=0.281  Sum_probs=8.9

Q ss_pred             ccCcEEEeeCCccccchH
Q 038576           36 KKLVILALRGSDMEELAG   53 (411)
Q Consensus        36 ~~L~~L~L~~~~l~~lp~   53 (411)
                      ++|++|++++|.++.+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            344555555555554444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.34  E-value=0.21  Score=26.82  Aligned_cols=18  Identities=22%  Similarity=0.281  Sum_probs=8.9

Q ss_pred             ccCcEEEeeCCccccchH
Q 038576           36 KKLVILALRGSDMEELAG   53 (411)
Q Consensus        36 ~~L~~L~L~~~~l~~lp~   53 (411)
                      ++|++|++++|.++.+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            344555555555554444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.46  E-value=0.4  Score=25.72  Aligned_cols=22  Identities=41%  Similarity=0.684  Sum_probs=15.0

Q ss_pred             CCCCCEEecCCCCCccccCcccc
Q 038576           58 LTQLRLLNLSKCFELKVIPPNVI   80 (411)
Q Consensus        58 l~~L~~L~L~~c~~~~~~~~~~l   80 (411)
                      +++|++|++++ +.++.+|.+++
T Consensus         1 L~~L~~L~L~~-N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSN-NQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCC-CcCCcCCHHHc
Confidence            45677778777 57777776533

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.46  E-value=0.4  Score=25.72  Aligned_cols=22  Identities=41%  Similarity=0.684  Sum_probs=15.0

Q ss_pred             CCCCCEEecCCCCCccccCcccc
Q 038576           58 LTQLRLLNLSKCFELKVIPPNVI   80 (411)
Q Consensus        58 l~~L~~L~L~~c~~~~~~~~~~l   80 (411)
                      +++|++|++++ +.++.+|.+++
T Consensus         1 L~~L~~L~L~~-N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSN-NQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCC-CcCCcCCHHHc
Confidence            45677778777 57777776533

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=87.85  E-value=0.36  Score=25.97  Aligned_cols=16  Identities=38%  Similarity=0.617  Sum_probs=8.0

Q ss_pred             CCCCeeecCCCcCCce
Q 038576          325 SELKELNLSNLQSLTS  340 (411)
Q Consensus       325 ~~L~~L~l~~c~~l~~  340 (411)
                      |+|++|++++|+++++
T Consensus         2 ~~L~~L~l~~C~~itD   17 (26)
T smart00367        2 PNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCEeCCCCCCCcCH
Confidence            4455555555554443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=80.18  E-value=0.79  Score=23.99  Aligned_cols=14  Identities=21%  Similarity=0.330  Sum_probs=6.1

Q ss_pred             ccCcEEEeeCCccc
Q 038576           36 KKLVILALRGSDME   49 (411)
Q Consensus        36 ~~L~~L~L~~~~l~   49 (411)
                      ++|++|++++|.|+
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            34555555555544

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	411
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 73.8 bits (182), Expect = 9e-15
 Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 23/144 (15%)

Query: 2   HLLALPSSLGLLQNLQTLSLDDCELGDM-AIIGDLKKLVILALRG-SDMEELAGEIGQLT 59
            + +LP+S+  LQNL++L + +  L  +   I  L KL  L LRG + +       G   
Sbjct: 194 GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA 253

Query: 60  QLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASL----DE 115
            L+ L L  C  L  +P + I  L++LE+L +                R   +L      
Sbjct: 254 PLKRLILKDCSNLLTLPLD-IHRLTQLEKLDL----------------RGCVNLSRLPSL 296

Query: 116 LNNLSKLTSLEILIQDEKTLPRDL 139
           +  L     + +    +  L +  
Sbjct: 297 IAQLPANCIILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.9 bits (177), Expect = 4e-14
 Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 24/136 (17%)

Query: 2   HLLALPSSLGLLQNLQTLSLDDCELGDM-AIIGDLKKLVILALRGSDMEELAGEIGQLTQ 60
            L   P     L +LQ +++D   L ++   +     L  L L  + +  L   I  L +
Sbjct: 92  PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNR 151

Query: 61  LRLLNLSKCFELKVIPPNV--------ISSLSRLEELYIGQSPIQWGKVEGVDGERRNAS 112
           LR L++  C EL  +P  +           L  L+ L +  + I+              S
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--------------S 197

Query: 113 L-DELNNLSKLTSLEI 127
           L   + NL  L SL+I
Sbjct: 198 LPASIANLQNLKSLKI 213

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.0 bits (167), Expect = 7e-13
 Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 19/127 (14%)

Query: 4   LALPSSLGLLQNLQTLSLDDCELGDM-AIIGDLKKLVILALRGSDMEELAGEIGQLTQLR 62
                    L NLQ+L L+   +  + A I +L+ L  L +R S +  L   I  L +L 
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLE 232

Query: 63  LLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDEL-NNLSK 121
            L+L  C  L+  PP      + L+ L +                +  ++L  L  ++ +
Sbjct: 233 ELDLRGCTALRNYPPI-FGGRAPLKRLIL----------------KDCSNLLTLPLDIHR 275

Query: 122 LTSLEIL 128
           LT LE L
Sbjct: 276 LTQLEKL 282

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.6 bits (127), Expect = 7e-08
 Identities = 25/152 (16%), Positives = 40/152 (26%), Gaps = 27/152 (17%)

Query: 2   HLLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQL 61
            L      L   Q       +           +     I    G  ++  A  +   TQ 
Sbjct: 24  ALRPYHDVLSQWQRHYNADRNRWHS--AWRQANSNNPQIETRTGRALKATADLLEDATQP 81

Query: 62  RL--LNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDEL-NN 118
               L L     L   P      LS L+ + I  +                  L EL + 
Sbjct: 82  GRVALELRSV-PLPQFPDQ-AFRLSHLQHMTIDAA-----------------GLMELPDT 122

Query: 119 LSKLTSLEILIQDE---KTLPRDLSFFKMLQR 147
           + +   LE L       + LP  ++    L+ 
Sbjct: 123 MQQFAGLETLTLARNPLRALPASIASLNRLRE 154

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 20/127 (15%), Positives = 44/127 (34%), Gaps = 20/127 (15%)

Query: 3   LLALPSSLGLLQNLQTLSLDDCELGDM-AIIGDLK--KLVILALRGSDMEELAGEIGQLT 59
                       N Q  +     L     ++ D      V L LR   + +   +  +L+
Sbjct: 45  RWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLS 104

Query: 60  QLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASL-DELNN 118
            L+ + +     L  +P   +   + LE L + ++P++              +L   + +
Sbjct: 105 HLQHMTIDAA-GLMELPDT-MQQFAGLETLTLARNPLR--------------ALPASIAS 148

Query: 119 LSKLTSL 125
           L++L  L
Sbjct: 149 LNRLREL 155

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 4/85 (4%)

Query: 2   HLLALPSSLGLLQNLQTLSLDDC-ELGDM-AIIGDLKKLVILALRG-SDMEELAGEIGQL 58
            L   P   G    L+ L L DC  L  +   I  L +L  L LRG  ++  L   I QL
Sbjct: 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300

Query: 59  TQLRLLNLSKCFELKVIPPNVISSL 83
               ++ +    + + +  +   + 
Sbjct: 301 PANCIILVPPHLQAQ-LDQHRPVAR 324

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.9 bits (145), Expect = 9e-10
 Identities = 16/121 (13%), Positives = 31/121 (25%), Gaps = 3/121 (2%)

Query: 2   HLLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQL 61
            +  +  ++  L  LQ +   +           +      +      E        L  L
Sbjct: 436 RITFISKAIQRLTKLQIIYFANSPFT--YDNIAVDWEDANSDYAKQYENEELSWSNLKDL 493

Query: 62  RLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSK 121
             + L  C  +  +P   +  L  L+ L I  +          D  R     D    +  
Sbjct: 494 TDVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552

Query: 122 L 122
            
Sbjct: 553 F 553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 19/145 (13%)

Query: 2   HLLALPSSLGL--LQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQ-L 58
           +L   P+S  L  +  L  L     ++  +   G   KL  L L  + +EE+  +     
Sbjct: 559 NLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFT 618

Query: 59  TQLRLLNLSKCFELKVIPPNV-ISSLSRLEELYIGQSPIQ--WGKVEGVDGERRNASLDE 115
            Q+  L  S   +LK IP      S+  +  +    + I      +     + +  +   
Sbjct: 619 DQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677

Query: 116 L----NNLS--------KLTSLEIL 128
           +    N +           + +  +
Sbjct: 678 VTLSYNEIQKFPTELFATGSPISTI 702

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.2 bits (112), Expect = 7e-06
 Identities = 12/134 (8%), Positives = 39/134 (29%), Gaps = 16/134 (11%)

Query: 2   HLLALPSSLG-LLQNLQTLSLDDCELG---DMAIIGDLKKLVILALRGSDMEELAGEIG- 56
            +  +P         ++ L     +L    ++     +  +  +    + +      I  
Sbjct: 606 QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665

Query: 57  -----QLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNA 111
                +      + LS   E++  P  + ++ S +  + +  + +       +       
Sbjct: 666 SMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLM-----TSIPENSLKP 719

Query: 112 SLDELNNLSKLTSL 125
                 N   LT++
Sbjct: 720 KDGNYKNTYLLTTI 733

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 8/98 (8%)

Query: 3   LLALPSSLGLLQNLQTLSLDDCELGDM---AIIGDLKKLVILALRGSDMEELAGEIGQLT 59
           L     +      L T+ L   +L  +        L  L  + +  +       +    +
Sbjct: 717 LKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSS 776

Query: 60  QLRLLNLSKCFELKV-----IPPNVISSLSRLEELYIG 92
           QL+   +    + +        P  I++   L +L IG
Sbjct: 777 QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 58.2 bits (140), Expect = 2e-09
 Identities = 46/266 (17%), Positives = 97/266 (36%), Gaps = 39/266 (14%)

Query: 8   SSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLS 67
            +   L ++  +  ++ ++  +  I  L  +  L L G+ + ++   +  L  L  L L 
Sbjct: 37  VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLD 95

Query: 68  KCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEI 127
           +  ++K +    +  L +L+ L +  + I                ++ L +L +L SL +
Sbjct: 96  EN-KIKDLSS--LKDLKKLKSLSLEHNGIS--------------DINGLVHLPQLESLYL 138

Query: 128 LIQDEKTLPRDLSFFKMLQRYRIL-IGDSREYDAWDGISRISKL-KLTNGANICLNEGHI 185
                     D++    L +   L + D++       IS I  L  LT   N+ L++ HI
Sbjct: 139 ----GNNKITDITVLSRLTKLDTLSLEDNQ-------ISDIVPLAGLTKLQNLYLSKNHI 187

Query: 186 MQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQI-----FKQESSNAKD 240
             L+ +  L +    + L    +   N        +     +K         +  S+  D
Sbjct: 188 SDLRALAGLKN---LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGD 244

Query: 241 LEKLSIFMCDNLTHLVPSSTSFQNLT 266
            EK ++           S   +Q +T
Sbjct: 245 YEKPNVKWHLPEFTNEVSFIFYQPVT 270

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 25/125 (20%), Positives = 54/125 (43%), Gaps = 17/125 (13%)

Query: 3   LLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLR 62
            +   S+L  L NL+ L L++  + D++ + +L K+  L L  +        +  +T L 
Sbjct: 99  KITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLN 158

Query: 63  LLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKL 122
            L +++  ++K + P  I++L+ L  L +  + I+               +  L +L+ L
Sbjct: 159 YLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIE--------------DISPLASLTSL 201

Query: 123 TSLEI 127
                
Sbjct: 202 HYFTA 206

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.2 bits (139), Expect = 3e-09
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 16/120 (13%)

Query: 8   SSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLS 67
           S L  L  L  L +   ++ D+  + DL KL +L +  + + +++  +  L+QL  L L+
Sbjct: 237 SPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLN 295

Query: 68  KCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEI 127
              +L      VI  L+ L  L++ Q+ I                +  L +LSK+ S + 
Sbjct: 296 NN-QLGNEDMEVIGGLTNLTTLFLSQNHIT--------------DIRPLASLSKMDSADF 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.2 bits (134), Expect = 1e-08
 Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 18/126 (14%)

Query: 2   HLLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQL 61
           H L+  S L  +  L  L++ + ++ D+  I +L  L  L+L  + +E++   +  LT L
Sbjct: 143 HNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDI-SPLASLTSL 201

Query: 62  RLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSK 121
                    ++  I P  +++++RL  L IG + I                L  L NLS+
Sbjct: 202 HYFTAYVN-QITDITP--VANMTRLNSLKIGNNKIT--------------DLSPLANLSQ 244

Query: 122 LTSLEI 127
           LT LEI
Sbjct: 245 LTWLEI 250

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.2 bits (134), Expect = 1e-08
 Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 20/121 (16%)

Query: 8   SSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLS 67
             +  L NL+ L+L+  ++ D++ + +L KL  L +  + + +++  +  LT LR L L+
Sbjct: 60  QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLN 118

Query: 68  KCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEI 127
           +   +  I P  +++L+++  L +G                 N +L +L+ LS +T L  
Sbjct: 119 ED-NISDISP--LANLTKMYSLNLG----------------ANHNLSDLSPLSNMTGLNY 159

Query: 128 L 128
           L
Sbjct: 160 L 160

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.9 bits (133), Expect = 2e-08
 Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 18/121 (14%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNL 66
             +   L+++  L +   ++  +  I  L  L  L L G+ + +++  +  L +L  L +
Sbjct: 37  VVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYI 95

Query: 67  SKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLE 126
               ++  I    + +L+ L ELY+ +  I                +  L NL+K+ SL 
Sbjct: 96  GTN-KITDISA--LQNLTNLRELYLNEDNIS--------------DISPLANLTKMYSLN 138

Query: 127 I 127
           +
Sbjct: 139 L 139

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.7 bits (130), Expect = 3e-08
 Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 18/120 (15%)

Query: 8   SSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLS 67
                L       L    + D+    +L+ +  L + G  +  + G I  LT L  LNL+
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLN 74

Query: 68  KCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEI 127
              ++  I P  +S+L +L  LYIG + I                +  L NL+ L  L +
Sbjct: 75  GN-QITDISP--LSNLVKLTNLYIGTNKIT--------------DISALQNLTNLRELYL 117

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.2 bits (121), Expect = 5e-07
 Identities = 26/131 (19%), Positives = 57/131 (43%), Gaps = 19/131 (14%)

Query: 8   SSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLS 67
           + +  L +L +LSL+  ++ D++ +  L  L       + + ++   +  +T+L  L + 
Sbjct: 171 TPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIG 229

Query: 68  KCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELN---------- 117
              ++  + P  +++LS+L  L IG + I       ++  +    L  LN          
Sbjct: 230 NN-KITDLSP--LANLSQLTWLEIGTNQI-----SDINAVKDLTKLKMLNVGSNQISDIS 281

Query: 118 NLSKLTSLEIL 128
            L+ L+ L  L
Sbjct: 282 VLNNLSQLNSL 292

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.5 bits (119), Expect = 9e-07
 Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLN 65
            +++  L  L+ L++   ++ D++++ +L +L  L L  + +       IG LT L  L 
Sbjct: 258 INAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 66  LSKCFELKVIPPNVISSLSRLEELYIGQSPIQ 97
           LS+   +  I P  ++SLS+++        I+
Sbjct: 318 LSQN-HITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 18/112 (16%)

Query: 16  LQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVI 75
             TL+     +  +    DL + +   L+ + + ++     +L  +  L ++   ++  I
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGE-KVASI 59

Query: 76  PPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEI 127
               I  L+ LE L +  + I                +  L+NL KLT+L I
Sbjct: 60  QG--IEYLTNLEYLNLNGNQIT--------------DISPLSNLVKLTNLYI 95

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.5 bits (137), Expect = 6e-09
 Identities = 24/121 (19%), Positives = 49/121 (40%), Gaps = 18/121 (14%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNL 66
              +  L NL  ++  + +L D+  + +L KLV + +  + + ++   +  LT L  L L
Sbjct: 61  IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTL 119

Query: 67  SKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLE 126
               ++  I P  + +L+ L  L +  + I                +  L+ L+ L  L 
Sbjct: 120 FNN-QITDIDP--LKNLTNLNRLELSSNTIS--------------DISALSGLTSLQQLS 162

Query: 127 I 127
            
Sbjct: 163 F 163

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 18/120 (15%)

Query: 8   SSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLS 67
           + LG+L NL  LSL+  +L D+  +  L  L  L L  + +  LA  +  LT+L  L L 
Sbjct: 215 TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLG 273

Query: 68  KCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEI 127
              ++  I P  ++ L+ L  L + ++ ++               +  ++NL  LT L +
Sbjct: 274 AN-QISNISP--LAGLTALTNLELNENQLE--------------DISPISNLKNLTYLTL 316

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.4 bits (129), Expect = 6e-08
 Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 18/120 (15%)

Query: 8   SSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLS 67
           S L  L  L  L L++ +L D++ I +LK L  L L  +++ +++  +  LT+L+ L   
Sbjct: 281 SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFY 339

Query: 68  KCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEI 127
              ++  +    +++L+ +  L  G + I                L  L NL+++T L +
Sbjct: 340 NN-KVSDVSS--LANLTNINWLSAGHNQIS--------------DLTPLANLTRITQLGL 382

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.0 bits (128), Expect = 7e-08
 Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 18/121 (14%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNL 66
              L  L  L+ L +   ++ D++++  L  L  L    + + ++   +G LT L  L+L
Sbjct: 170 LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSL 228

Query: 67  SKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLE 126
           +   +LK I    ++SL+ L +L +  + I               +L  L+ L+KLT L+
Sbjct: 229 NGN-QLKDIGT--LASLTNLTDLDLANNQIS--------------NLAPLSGLTKLTELK 271

Query: 127 I 127
           +
Sbjct: 272 L 272

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.0 bits (128), Expect = 8e-08
 Identities = 23/121 (19%), Positives = 48/121 (39%), Gaps = 18/121 (14%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNL 66
             S   L  + TL  D   +  +  +  L  L  +    + + ++   +  LT+L  + +
Sbjct: 39  TVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILM 97

Query: 67  SKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLE 126
           +   ++  I P  +++L+ L  L +  + I                +D L NL+ L  LE
Sbjct: 98  NNN-QIADITP--LANLTNLTGLTLFNNQIT--------------DIDPLKNLTNLNRLE 140

Query: 127 I 127
           +
Sbjct: 141 L 141

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.0 bits (128), Expect = 8e-08
 Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 18/121 (14%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNL 66
             +L  L NL  L L + ++ ++A +  L KL  L L  + +  ++  +  LT L  L L
Sbjct: 236 IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLEL 294

Query: 67  SKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLE 126
           ++  +L+ I P  IS+L  L  L +  + I                +  +++L+KL  L 
Sbjct: 295 NEN-QLEDISP--ISNLKNLTYLTLYFNNIS--------------DISPVSSLTKLQRLF 337

Query: 127 I 127
            
Sbjct: 338 F 338

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 21/122 (17%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNL 66
            S L  L NL++L   + ++ D+  +G L  L  L+L G+ ++++ G +  LT L  L+L
Sbjct: 192 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDL 250

Query: 67  SKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLE 126
           +   ++  + P  +S L++L EL +G + I                   ++ L+ LT+L 
Sbjct: 251 ANN-QISNLAP--LSGLTKLTELKLGANQIS-----------------NISPLAGLTALT 290

Query: 127 IL 128
            L
Sbjct: 291 NL 292

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 18/120 (15%)

Query: 8   SSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLS 67
            +   L       L    + D     DL ++  L      ++ + G +  L  L  +N S
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFS 76

Query: 68  KCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEI 127
              +L  I P  + +L++L ++ +  + I                +  L NL+ LT L +
Sbjct: 77  NN-QLTDITP--LKNLTKLVDILMNNNQIA--------------DITPLANLTNLTGLTL 119

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.3 bits (121), Expect = 6e-07
 Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 14/128 (10%)

Query: 8   SSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLS 67
             L  L NL  L L    + D++ +  L  L  L+      +     +  LT L  L++S
Sbjct: 128 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDIS 185

Query: 68  KCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDG-------ERRNASLDELNNLS 120
              ++  I    ++ L+ LE L    + I    +  +               L ++  L+
Sbjct: 186 SN-KVSDISV--LAKLTNLESLIATNNQIS--DITPLGILTNLDELSLNGNQLKDIGTLA 240

Query: 121 KLTSLEIL 128
            LT+L  L
Sbjct: 241 SLTNLTDL 248

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 20/131 (15%)

Query: 8   SSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLS 67
           + L  L  L  + +++ ++ D+  + +L  L  L L  + + ++   +  LT L  L LS
Sbjct: 84  TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELS 142

Query: 68  KCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELN---------- 117
               +  I    +S L+ L++L  G       +V  +       +L+ L+          
Sbjct: 143 SN-TISDISA--LSGLTSLQQLSFG------NQVTDLKPLANLTTLERLDISSNKVSDIS 193

Query: 118 NLSKLTSLEIL 128
            L+KLT+LE L
Sbjct: 194 VLAKLTNLESL 204

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 24/139 (17%), Positives = 57/139 (41%), Gaps = 17/139 (12%)

Query: 8   SSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLS 67
           S +  L+NL  L+L    + D++ +  L KL  L    + + +++  +  LT +  L+  
Sbjct: 303 SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAG 361

Query: 68  KCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEI 127
              ++  + P  +++L+R+ +L +                  NA ++   N+S   +++ 
Sbjct: 362 HN-QISDLTP--LANLTRITQLGLNDQAWT------------NAPVNYKANVSIPNTVKN 406

Query: 128 LIQDEKTLPRDLSFFKMLQ 146
           +       P  +S      
Sbjct: 407 VTG-ALIAPATISDGGSYT 424

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 2/85 (2%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNL 66
            SSL  L N+  LS    ++ D+  + +L ++  L L                 + + N 
Sbjct: 346 VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKAN--VSIPNT 403

Query: 67  SKCFELKVIPPNVISSLSRLEELYI 91
            K     +I P  IS      E  I
Sbjct: 404 VKNVTGALIAPATISDGGSYTEPDI 428

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.2 bits (131), Expect = 7e-09
 Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 8   SSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDM-EELAGEIGQLTQLRLLNL 66
           + +    N++ L++++    +   I  L  L  L + G D+  +    +  LT L LL++
Sbjct: 60  TGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 67  SKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLE 126
           S            I++L ++  + +                  N ++ ++  L  L  L+
Sbjct: 120 SHS-AHDDSILTKINTLPKVNSIDLS----------------YNGAITDIMPLKTLPELK 162

Query: 127 IL 128
            L
Sbjct: 163 SL 164

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 20/115 (17%), Positives = 43/115 (37%), Gaps = 14/115 (12%)

Query: 13  LQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFEL 72
           + +L  ++L +  + D+  I     +  L +           I  L+ L  L +    ++
Sbjct: 43  MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP-ISGLSNLERLRIMGK-DV 100

Query: 73  KVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEI 127
                  +S L+ L  L I  S               ++ L ++N L K+ S+++
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAH------------DDSILTKINTLPKVNSIDL 143

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 24/132 (18%), Positives = 48/132 (36%), Gaps = 22/132 (16%)

Query: 8   SSLGLLQNLQTLSLDDCELGDMAI--IGDLKKLVILALRGSDMEELA-GEIGQLTQLRLL 64
           + +  L NL+ L +   ++    I  +  L  L +L +  S  ++    +I  L ++  +
Sbjct: 82  NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141

Query: 65  NLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTS 124
           +LS    +  I P  + +L  L+ L I    +                   + +  KL  
Sbjct: 142 DLSYNGAITDIMP--LKTLPELKSLNIQFDGVH--------------DYRGIEDFPKLNQ 185

Query: 125 LEI---LIQDEK 133
           L      I  +K
Sbjct: 186 LYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.3 bits (108), Expect = 8e-06
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 5/92 (5%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMAI--IGDLKKLVILALRGSDMEELAGEIGQLTQLRLL 64
             +L  L +L  L +      D  +  I  L K+  + L  +        +  L +L+ L
Sbjct: 105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSL 164

Query: 65  NLSKCFELKVIPPNVISSLSRLEELYIGQSPI 96
           N+     +       I    +L +LY     I
Sbjct: 165 NIQFD-GVHDYRG--IEDFPKLNQLYAFSQTI 193

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 10/124 (8%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDM--AIIGDLKKLVILALRG---SDMEELAGEIGQLTQL 61
                 L+N+  + L   +   +       +  L  L LR     +++        L  L
Sbjct: 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482

Query: 62  RLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSK 121
            +L+LS    +  I  +++  L +LE L +  + +         G      +  L  LS 
Sbjct: 483 TILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG----PIYFLKGLSH 537

Query: 122 LTSL 125
           L  L
Sbjct: 538 LHIL 541

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 10/127 (7%)

Query: 7   PSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRG---SDMEELAGEIGQLTQL 61
            +     +NL TL L    L    +     L+ L  L L       ++    +I   + L
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173

Query: 62  RLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDEL----N 117
           + L LS    +K   P    ++ RL  L++    +     E +  E  N S+  L    +
Sbjct: 174 KKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232

Query: 118 NLSKLTS 124
            LS  ++
Sbjct: 233 QLSTTSN 239

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 19/122 (15%), Positives = 39/122 (31%), Gaps = 16/122 (13%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDM--AIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRL 63
            ++      L +L +    +  +   +   L  L +L L+ +++ +L        T L  
Sbjct: 42  AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101

Query: 64  LNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLT 123
           L+L     ++ I  N       L  L +  + +             +  L     L  L 
Sbjct: 102 LHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLS------------STKLGTQVQLENLQ 148

Query: 124 SL 125
            L
Sbjct: 149 EL 150

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 9e-07
 Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 21/131 (16%)

Query: 1   MHLLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEEL-AGEIGQ 57
           + L  +P    L  N+  L+L   +L     A      +L  L +  + + +L      +
Sbjct: 14  LKLTQVPD--DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 71

Query: 58  LTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELN 117
           L  L++LNL    EL  +     +  + L EL++  + IQ               +   N
Sbjct: 72  LPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQ--------------KIKN-N 115

Query: 118 NLSKLTSLEIL 128
              K  +L  L
Sbjct: 116 PFVKQKNLITL 126

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 12/101 (11%)

Query: 2   HLLALPSSLGLLQNLQTLSLDDCELGDM--AIIGDLKKLVILALRGSDMEELAGE----- 54
           ++ + PS    L+NL  L L +  + ++   ++  L+KL IL L+ +++  L        
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527

Query: 55  ----IGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYI 91
               +  L+ L +LNL        IP  V   L  L+ + +
Sbjct: 528 PIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDL 567

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 24/143 (16%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMAIIGD-----LKKLVILALRGSDMEELAGEIG---QL 58
           P     +  L  L L++ +LG               +  L+L  S +   +       + 
Sbjct: 188 PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW 247

Query: 59  TQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNN 118
           T L +L+LS    L V+  +  + L +LE  ++  + IQ               L   ++
Sbjct: 248 TNLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYNNIQ--------------HLFS-HS 291

Query: 119 LSKLTSLEILIQDEKTLPRDLSF 141
           L  L ++  L        + +S 
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISL 314

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 19/126 (15%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDM--AIIGDLKKLVILALRGSDMEELAGEIGQL-----T 59
             S   L+ L+ L+++D ++  +   +   L  L  L+L  S                 +
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381

Query: 60  QLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNL 119
            L +LNL+K  ++  I  +  S L  LE L +G + I            +  +  E   L
Sbjct: 382 PLHILNLTKN-KISKIESDAFSWLGHLEVLDLGLNEI-----------GQELTGQEWRGL 429

Query: 120 SKLTSL 125
             +  +
Sbjct: 430 ENIFEI 435

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 12/96 (12%)

Query: 7   PSSLGLLQNLQTLSLDDCEL----------GDMAIIGDLKKLVILALRGSDMEEL-AGEI 55
              L  L+ L+ L L    L          G +  +  L  L IL L  +  +E+     
Sbjct: 497 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556

Query: 56  GQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYI 91
             L +L++++L     L  +P +V ++   L+ L +
Sbjct: 557 KDLFELKIIDLGLNN-LNTLPASVFNNQVSLKSLNL 591

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 26/132 (19%), Positives = 42/132 (31%), Gaps = 25/132 (18%)

Query: 7   PSSLGLLQ--NLQTLSLDDCELGDM--AIIGDLKKLVILALRGSDMEEL-AGEIGQLTQL 61
            ++   L+  NL  L L    L  +       L +L    L  ++++ L +  +  L  +
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298

Query: 62  RLLNLSKCF--------ELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASL 113
           R LNL + F         L  I       L  LE L +  + I                 
Sbjct: 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP------------GIKS 346

Query: 114 DELNNLSKLTSL 125
           +    L  L  L
Sbjct: 347 NMFTGLINLKYL 358

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 17/129 (13%), Positives = 45/129 (34%), Gaps = 18/129 (13%)

Query: 3   LLALPSSLGLLQNLQTLSLDDCELGDMAI---IGDLKKLVILALRGSDMEELAGEIGQLT 59
                +   + + +Q + +    L    +   +  +KKL +L    + +E      G   
Sbjct: 294 DWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEI 353

Query: 60  QLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNL 119
           +L  LNL+   ++  IP N      ++E L    + ++               +  + + 
Sbjct: 354 KLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLK--------------YIPNIFDA 398

Query: 120 SKLTSLEIL 128
             ++ +  +
Sbjct: 399 KSVSVMSAI 407

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 11/101 (10%), Positives = 34/101 (33%), Gaps = 12/101 (11%)

Query: 2   HLLALPSSLGLLQNLQTLSLDDCELG--DMAIIGDLKKLVILALRG--------SDMEEL 51
           +   L  +     N+ +++L + ++      +      L  + L G        + +++ 
Sbjct: 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480

Query: 52  AGEIGQLTQLRLLNLSKCFELKVIPPNV-ISSLSRLEELYI 91
                    L  ++L     L  +  +   ++L  L  + +
Sbjct: 481 NENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDL 520

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 15/99 (15%), Positives = 38/99 (38%), Gaps = 14/99 (14%)

Query: 6   LPSSLGLLQNLQTLSLDDCEL----------GDMAIIGDLKKLVILALRGSDMEELA--G 53
           LP+ L  L  +Q +++                 +A     +K+ I+ +  ++++      
Sbjct: 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324

Query: 54  EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIG 92
            + ++ +L +L      +L+   P    S  +L  L + 
Sbjct: 325 SLQKMKKLGMLECLYN-QLEGKLPA-FGSEIKLASLNLA 361

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 16/136 (11%)

Query: 9   SLGLLQNLQTLSLDDCELGDM--AIIGDLKKLVILAL-----RGSDMEELAGEIGQLTQL 61
           SL     +  LSL+           IG L +L +LAL     + ++       I      
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 62  RLLNLSKCFELKVIPPNVIS-SLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNN-- 118
                 +    K           S L +  I   P Q    +      ++  + +L+N  
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 119 ------LSKLTSLEIL 128
                 + +LT L   
Sbjct: 196 TFVSKAVMRLTKLRQF 211

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 17/158 (10%), Positives = 48/158 (30%), Gaps = 39/158 (24%)

Query: 2   HLLALPSSLGLLQNLQTLSLDDCELGDM--AIIGDLKKLVILALRGSDMEEL--AGEIGQ 57
            L     + G    L +L+L   ++ ++     G  +++  L+   + ++ +    +   
Sbjct: 341 QLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKS 400

Query: 58  LTQLRLLNLS--------------------KCFELKV----------IPPNVISSLSRLE 87
           ++ +  ++ S                    K   +             P  + S+ S L 
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460

Query: 88  ELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSL 125
            + +  + +       +         +   N   LTS+
Sbjct: 461 SINLMGNMLT-----EIPKNSLKDENENFKNTYLLTSI 493

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 17/159 (10%), Positives = 47/159 (29%), Gaps = 17/159 (10%)

Query: 2   HLLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRG------SDMEELAGEI 55
             L  P  +    + +              +    +     L           + +    
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKT-FVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179

Query: 56  GQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYI------GQSPIQWGKVEGVDGERR 109
               +   +       +  +    +  L++L + Y+       ++  +  + E  +  ++
Sbjct: 180 RITLKDTQIGQLS-NNITFVSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237

Query: 110 NASLD-ELNNLSKLTSLEIL-IQDEKTLPRDLSFFKMLQ 146
             + D + +NL  LT +E+    +   LP  L     +Q
Sbjct: 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 13/95 (13%), Positives = 25/95 (26%), Gaps = 11/95 (11%)

Query: 2   HLLALPSSLGL--LQNLQTLSLDDCELGDM-AIIGDLKKLVILALRGSD-------MEEL 51
            L  L        L  L  + L             +   L    +R          + E 
Sbjct: 499 KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558

Query: 52  AGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRL 86
              I     L  L +    +++ +   +  ++S L
Sbjct: 559 PEGITLCPSLTQLQIGSN-DIRKVNEKITPNISVL 592

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 13/125 (10%)

Query: 5   ALPSSLGLLQNLQTLSLDDCEL-GDMAIIGDLKKLVILALRGSDMEEL---AGEIGQLTQ 60
           A+ SSL  L  L++L L +  + G ++       L  L L  + +         +G  + 
Sbjct: 68  AVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127

Query: 61  LRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLS 120
           L+ LN+S          +    L+ LE L +  + I  G                 +   
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS-GANV--------VGWVLSDGCG 178

Query: 121 KLTSL 125
           +L  L
Sbjct: 179 ELKHL 183

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 16/114 (14%), Positives = 33/114 (28%), Gaps = 26/114 (22%)

Query: 6   LPSSLGLLQNLQTLSLDDCEL-GDM------------------------AIIGDLKKLVI 40
              ++     L+ L++   +  G +                         + G    L  
Sbjct: 239 FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTG 298

Query: 41  LALRGSDME-ELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQ 93
           L L G+     +    G  + L  L LS       +P + +  +  L+ L +  
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.9 bits (107), Expect = 4e-05
 Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 24/108 (22%)

Query: 9   SLGLLQNLQTLSLDDCEL-GDMAIIGDLKKLVILALRGSDME-ELAGEIGQLTQLRLLNL 66
            +    NL+ L +        +  +GD   L  L + G+ +  + +  I   T+L+LLN+
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254

Query: 67  S-----------KCFELKV-----------IPPNVISSLSRLEELYIG 92
           S               L+            IP  +  +   L  L + 
Sbjct: 255 SSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 59/386 (15%), Positives = 122/386 (31%), Gaps = 41/386 (10%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDM--AIIGDLKKLVILALRGSDMEEL--AGEIGQLTQLR 62
             +   L +L+ L L D  L  +  +  G L  L  L L G+  + L        LT L+
Sbjct: 67  GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126

Query: 63  LLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKL 122
            L +        I     + L+ L EL I    ++            N     L ++  +
Sbjct: 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR------------NYQSQSLKSIRDI 174

Query: 123 TSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNE 182
             L + + +   L     F  +L   R L            ++R     L         +
Sbjct: 175 HHLTLHLSESAFLLEI--FADILSSVRYLELRDT------NLARFQFSPLPVDEVSSPMK 226

Query: 183 GHIMQLKRIEDLTSGGDSEALYTSFKNVENGME-AMMRGINHRRELKQIFKQESSNAKDL 241
               +   + D +     + L    +  E   +   + G+      +     E    + +
Sbjct: 227 KLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV 286

Query: 242 EKLSIFMCDNLTHLVPSST--SFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVC 299
               + +         S+     + +  +TV      + ++  S ++ L  L  + +   
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK--VFLVPCSFSQHLKSLEFLDLSEN 344

Query: 300 VMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLV 359
           +M+ E + +   +G          +  L+ L LS    L S   +G        +L  L 
Sbjct: 345 LMVEEYLKNSACKGA---------WPSLQTLVLSQNH-LRSMQKTGEILL-TLKNLTSLD 393

Query: 360 VNRCPNMKIFSEGELSTPKLQKVQMS 385
           ++R        +      K++ + +S
Sbjct: 394 ISRN-TFHPMPDSCQWPEKMRFLNLS 418

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 16/87 (18%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 11  GLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCF 70
            + Q L+ L + +  L   +    L +L  L +  + ++ L  +      L ++ +S+  
Sbjct: 428 CIPQTLEVLDVSNNNL--DSFSLFLPRLQELYISRNKLKTLP-DASLFPVLLVMKISRN- 483

Query: 71  ELKVIPPNVISSLSRLEELYIGQSPIQ 97
           +LK +P  +   L+ L+++++  +P  
Sbjct: 484 QLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 26/179 (14%), Positives = 58/179 (32%), Gaps = 9/179 (5%)

Query: 4   LALPSSLGLLQNLQTLSLDDCELG---DMAIIGDLKKLVILALRGSDMEEL-AGEIGQLT 59
           L + S    L NLQTL + + E            L  L  L ++   +    +  +  + 
Sbjct: 113 LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172

Query: 60  QLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNL 119
            +  L L    E   +       LS +  L +  + +   +   +  +  ++ + +L   
Sbjct: 173 DIHHLTLHLS-ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231

Query: 120 SKLTSLEILIQDEKTLPRDLS----FFKMLQRYRILIGDSREYDAWDGISRISKLKLTN 174
             + + E   +  K L   L      F       +   +  E D    + ++  + +  
Sbjct: 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRR 290

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 32/125 (25%), Positives = 45/125 (36%), Gaps = 18/125 (14%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDM--AIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRL 63
             S      LQ L L  CE+  +       L  L  L L G+ ++ L  G    L+ L+ 
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104

Query: 64  LNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLT 123
           L   +   L  +    I  L  L+EL +  + IQ              S       S LT
Sbjct: 105 LVAVETN-LASLENFPIGHLKTLKELNVAHNLIQ--------------SFKLPEYFSNLT 149

Query: 124 SLEIL 128
           +LE L
Sbjct: 150 NLEHL 154

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDM--AIIGDLKKLVILALRGSDMEE--LAGEIGQLTQLR 62
            S    L+NL  L +           I   L  L +L + G+  +E  L     +L  L 
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473

Query: 63  LLNLSKCFELKVIPPNVISSLSRLEELYI 91
            L+LS+C  L+ + P   +SLS L+ L +
Sbjct: 474 FLDLSQCQ-LEQLSPTAFNSLSSLQVLNM 501

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 4/94 (4%)

Query: 2   HLLALPSSLGLLQNLQTLSLDDCELGDM---AIIGDLKKLVILALRGSDMEEL-AGEIGQ 57
            ++ + S+   L+ L+ L      L  M   ++   L+ L+ L +  +       G    
Sbjct: 384 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

Query: 58  LTQLRLLNLSKCFELKVIPPNVISSLSRLEELYI 91
           L+ L +L ++     +   P++ + L  L  L +
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 3/89 (3%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMA--IIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRL 63
             +   L +L TL L    +  +A      L  L  L    +++  L    IG L  L+ 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 64  LNLSKCFELKVIPPNVISSLSRLEELYIG 92
           LN++         P   S+L+ LE L + 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 4/89 (4%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMAII----GDLKKLVILALRGSDMEELAGEIGQLTQLR 62
             S   L +L+ L L    L               L  L L  + +  ++     L QL 
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 399

Query: 63  LLNLSKCFELKVIPPNVISSLSRLEELYI 91
            L+       ++   +V  SL  L  L I
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 19/120 (15%), Positives = 47/120 (39%), Gaps = 18/120 (15%)

Query: 8   SSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLS 67
                L N   ++     + D     DL  +  L+  G+ +  + G +  L  L  L L 
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELK 71

Query: 68  KCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEI 127
              ++  + P  + +L+++ EL +  +P++              ++  +  L  + +L++
Sbjct: 72  DN-QITDLAP--LKNLTKITELELSGNPLK--------------NVSAIAGLQSIKTLDL 114

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 18/121 (14%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNL 66
             +   L  + TLS     +  +  +  L  L+ L L+ + + +LA  +  LT++  L L
Sbjct: 34  TVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELEL 92

Query: 67  SKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLE 126
           S    LK +    I+ L  ++ L +  + I                +  L  LS L  L 
Sbjct: 93  SGN-PLKNVSA--IAGLQSIKTLDLTSTQIT--------------DVTPLAGLSNLQVLY 135

Query: 127 I 127
           +
Sbjct: 136 L 136

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 24/120 (20%), Positives = 54/120 (45%), Gaps = 18/120 (15%)

Query: 8   SSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLS 67
           S++  LQ+++TL L   ++ D+  +  L  L +L L  + +  ++  +  LT L+ L++ 
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIG 159

Query: 68  KCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEI 127
              ++  + P  +++LS+L  L    + I                +  L +L  L  + +
Sbjct: 160 NA-QVSDLTP--LANLSKLTTLKADDNKIS--------------DISPLASLPNLIEVHL 202

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 18/120 (15%)

Query: 8   SSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLS 67
           + L  L NLQ L LD  ++ +++ +  L  L  L++  + + +L   +  L++L  L   
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKAD 181

Query: 68  KCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEI 127
              ++  I P  ++SL  L E+++  + I                +  L N S L  + +
Sbjct: 182 DN-KISDISP--LASLPNLIEVHLKNNQIS--------------DVSPLANTSNLFIVTL 224

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 20/131 (15%)

Query: 8   SSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLS 67
                L N    +L    + D+    +L  +       S+++ LAG +   T L+ L+LS
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG-MQFFTNLKELHLS 71

Query: 68  KCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELN---------- 117
              ++  + P  +  L++LEEL + ++ ++   + G+     +A L  L           
Sbjct: 72  HN-QISDLSP--LKDLTKLEELSVNRNRLK--NLNGIP----SACLSRLFLDNNELRDTD 122

Query: 118 NLSKLTSLEIL 128
           +L  L +LEIL
Sbjct: 123 SLIHLKNLEIL 133

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 22/121 (18%)

Query: 8   SSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLS 67
           + +    NL+ L L   ++ D++ + DL KL  L++  + ++ L         L  L L 
Sbjct: 57  AGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNL--NGIPSACLSRLFLD 114

Query: 68  KCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEI 127
              EL+      +  L  LE L I                 RN  L  +  L  L+ LE+
Sbjct: 115 NN-ELRDTDS--LIHLKNLEILSI-----------------RNNKLKSIVMLGFLSKLEV 154

Query: 128 L 128
           L
Sbjct: 155 L 155

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 32/125 (25%), Positives = 45/125 (36%), Gaps = 18/125 (14%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDM--AIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRL 63
             S      LQ L L  CE+  +       L  L  L L G+ ++ L  G    L+ L+ 
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104

Query: 64  LNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLT 123
           L   +   L  +    I  L  L+EL +  + IQ              S       S LT
Sbjct: 105 LVAVETN-LASLENFPIGHLKTLKELNVAHNLIQ--------------SFKLPEYFSNLT 149

Query: 124 SLEIL 128
           +LE L
Sbjct: 150 NLEHL 154

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 15/94 (15%), Positives = 39/94 (41%), Gaps = 4/94 (4%)

Query: 2   HLLALPSSLGLLQNLQTLSLDDC---ELGDMAIIGDLKKLVILALRGSDMEEL-AGEIGQ 57
            ++ + S+   L+ L+ L        ++ + ++   L+ L+ L +  +       G    
Sbjct: 384 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

Query: 58  LTQLRLLNLSKCFELKVIPPNVISSLSRLEELYI 91
           L+ L +L ++     +   P++ + L  L  L +
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDM---AIIGDLKKLVILALRGSDMEELAGEI-GQLTQLR 62
                 L +L+ L +      +     I  +L+ L  L L    +E+L+      L+ L+
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497

Query: 63  LLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQ 97
           +LN++   +LK +P  +   L+ L+++++  +P  
Sbjct: 498 VLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 3/94 (3%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMA--IIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRL 63
             +   L +L TL L    +  +A      L  L  L    +++  L    IG L  L+ 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 64  LNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQ 97
           LN++         P   S+L+ LE L +  + IQ
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 21/101 (20%), Positives = 33/101 (32%), Gaps = 7/101 (6%)

Query: 2   HLLALPSSLGLLQNLQTLSLDDCELGDMAIIGD----LKKLVILALRGSDMEELAGEIGQ 57
                 S + L  +L+ L L    L               L  L L  + +  ++     
Sbjct: 336 KGGNAFSEVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 394

Query: 58  LTQLRLLNLSKCFELKVIPP-NVISSLSRLEELYIGQSPIQ 97
           L QL  L+      LK +   +V  SL  L  L I  +  +
Sbjct: 395 LEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTR 434

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 2/85 (2%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLN 65
             +   L NL+ L+L  C + DM  +  L  L  L + G+   E+  G    L+ L+ L 
Sbjct: 189 EGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248

Query: 66  LSKCFELKVIPPNVISSLSRLEELY 90
           +    ++ +I  N    L+ L EL 
Sbjct: 249 VMNS-QVSLIERNAFDGLASLVELN 272

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 17/118 (14%)

Query: 13  LQNLQTLSLDDCELGDMA--IIGDLKKLVILALRGSDMEELAGEI-GQLTQLRLLNLSKC 69
           L +L TL L D  L  +       L KL  L LR + +E +      ++  L  L+L + 
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181

Query: 70  FELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEI 127
            +L+ I       L  L+ L +G   I+               +  L  L  L  LE+
Sbjct: 182 KKLEYISEGAFEGLFNLKYLNLGMCNIK--------------DMPNLTPLVGLEELEM 225

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 13  LQNLQTLSLDDC----ELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSK 68
           + +L  L L +      + + A  G L  L  L L   +++++   +  L  L  L +S 
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEG-LFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSG 227

Query: 69  CFELKVIPPNVISSLSRLEELYIGQSPIQ 97
                 I P     LS L++L++  S + 
Sbjct: 228 N-HFPEIRPGSFHGLSSLKKLWVMNSQVS 255

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 12/133 (9%)

Query: 7   PSSLGLLQNLQTLSLDDCELG--DMAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRL 63
             +   L +L+ L L    +   ++     L  L  L L  + +  + +G    L++LR 
Sbjct: 92  ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151

Query: 64  LNLSKCFELKVIPPNVISSLSRLEELYIGQSP----IQWGKVEGVDGERR----NASLDE 115
           L L     ++ IP    + +  L  L +G+      I  G  EG+   +       ++ +
Sbjct: 152 LWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210

Query: 116 LNNLSKLTSLEIL 128
           + NL+ L  LE L
Sbjct: 211 MPNLTPLVGLEEL 223

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 30/118 (25%), Positives = 44/118 (37%), Gaps = 17/118 (14%)

Query: 13  LQNLQTLSLDDCELGDMA--IIGDLKKLVILALRGSDMEELAGEI-GQLTQLRLLNLSKC 69
           L NL TL L D  L  +       L KL  L LR + +E +      ++  LR L+L + 
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170

Query: 70  FELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEI 127
             L  I       LS L  L +    ++               +  L  L KL  L++
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCNLR--------------EIPNLTPLIKLDELDL 214

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 13  LQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFE 71
           L NL+ L+L  C L ++  +  L KL  L L G+ +  +  G    L  L+ L + +  +
Sbjct: 184 LSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-Q 242

Query: 72  LKVIPPNVISSLSRLEELY 90
           ++VI  N   +L  L E+ 
Sbjct: 243 IQVIERNAFDNLQSLVEIN 261

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.0 bits (104), Expect = 6e-05
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 7/95 (7%)

Query: 7   PSSLGLLQNLQTLSLDDC----ELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLR 62
             +   + +L+ L L +      + + A  G L  L  L L   ++ E+   +  L +L 
Sbjct: 153 SYAFNRIPSLRRLDLGELKRLSYISEGAFEG-LSNLRYLNLAMCNLREI-PNLTPLIKLD 210

Query: 63  LLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQ 97
            L+LS    L  I P     L  L++L++ QS IQ
Sbjct: 211 ELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQ 244

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 5/99 (5%)

Query: 2   HLLALPSSLGLLQNLQTLSLDDCELG--DMAIIGDLKKLVILALRGSDMEEL-AGEIGQL 58
           +L  +P+ L  L  L  L L    L          L  L  L +  S ++ +       L
Sbjct: 196 NLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254

Query: 59  TQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQ 97
             L  +NL+    L ++P ++ + L  LE +++  +P  
Sbjct: 255 QSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 12/133 (9%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMA--IIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRL 63
            +S   L++L+ L L    +  +       L  L  L L  + +  +  G    L++L+ 
Sbjct: 81  VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE 140

Query: 64  LNLSKCFELKVIPPNVISSLSRLEELYIGQSP----IQWGKVEGVDGERR----NASLDE 115
           L L     ++ IP    + +  L  L +G+      I  G  EG+   R       +L E
Sbjct: 141 LWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199

Query: 116 LNNLSKLTSLEIL 128
           + NL+ L  L+ L
Sbjct: 200 IPNLTPLIKLDEL 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 16/100 (16%), Positives = 42/100 (42%), Gaps = 4/100 (4%)

Query: 2   HLLALPSSLGLLQNLQTLSLDDC---ELGDMAIIGDLKKLVILALRGSDMEELAGEI-GQ 57
            ++ + S+   L+ L+ L        ++ + ++   L+ L+ L +  +        I   
Sbjct: 89  GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148

Query: 58  LTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQ 97
           L+ L +L ++     +   P++ + L  L  L + Q  ++
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 13  LQNLQTLSLDDCELGDM--AIIGDLKKLVILALRGSDMEE--LAGEIGQLTQLRLLNLSK 68
           L+NL  L +           I   L  L +L + G+  +E  L     +L  L  L+LS+
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 69  CFELKVIPPNVISSLSRLEELYIGQSPIQ 97
           C +L+ + P   +SLS L+ L +  +   
Sbjct: 185 C-QLEQLSPTAFNSLSSLQVLNMSHNNFF 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 19/95 (20%), Positives = 29/95 (30%), Gaps = 4/95 (4%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMAIIGD----LKKLVILALRGSDMEELAGEIGQLTQLR 62
                 L  L  LSL    L               L  L L  + +  ++     L QL 
Sbjct: 45  HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 104

Query: 63  LLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQ 97
            L+       ++   +V  SL  L  L I  +  +
Sbjct: 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 139

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNL 66
            ++L     L  L+LD  EL  + + G L  L  L L  + ++ L      L  L +L++
Sbjct: 48  LATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107

Query: 67  SKCFELKVIPPNVISSLSRLEELYIGQSPIQ 97
           S    L  +P   +  L  L+ELY+  + ++
Sbjct: 108 SFN-RLTSLPLGALRGLGELQELYLKGNELK 137

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 3/87 (3%)

Query: 13  LQNLQTLSLDDCELGDM-AIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCF 70
           L  L TL L   +L  +  +   L  L +L +  + +  L  G +  L +L+ L L    
Sbjct: 76  LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN- 134

Query: 71  ELKVIPPNVISSLSRLEELYIGQSPIQ 97
           ELK +PP +++   +LE+L +  + + 
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLT 161

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 18/120 (15%)

Query: 8   SSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLS 67
             +  L N+  L L+  +L D+  + +LK L  L L  + +++L+  +  L +L+ L+L 
Sbjct: 62  QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLE 120

Query: 68  KCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEI 127
               +  I    +  L +LE LY+G + I                +  L+ L+KL +L +
Sbjct: 121 HN-GISDING--LVHLPQLESLYLGNNKIT--------------DITVLSRLTKLDTLSL 163

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 18/120 (15%)

Query: 8   SSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLS 67
            S          +L    + D     +L  +  +    SD++ + G I  L  +  L L+
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLN 76

Query: 68  KCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEI 127
              +L  I P  +++L  L  L++ ++ ++               L  L +L KL SL +
Sbjct: 77  GN-KLTDIKP--LANLKNLGWLFLDENKVK--------------DLSSLKDLKKLKSLSL 119

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 24/131 (18%), Positives = 53/131 (40%), Gaps = 19/131 (14%)

Query: 8   SSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLS 67
            +   L ++  +  ++ ++  +  I  L  +  L L G+ + ++   +  L  L  L L 
Sbjct: 40  VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLD 98

Query: 68  KCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELN---------- 117
           +  ++K +    +  L +L+ L +  + I    + G+        L+ L           
Sbjct: 99  EN-KVKDLSS--LKDLKKLKSLSLEHNGIS--DINGLVH---LPQLESLYLGNNKITDIT 150

Query: 118 NLSKLTSLEIL 128
            LS+LT L+ L
Sbjct: 151 VLSRLTKLDTL 161

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 10/115 (8%)

Query: 8   SSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLS 67
           + L  L  L++L L + ++ D+ ++  L KL  L+L  + + ++   +  LT+L+ L LS
Sbjct: 128 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLS 186

Query: 68  KCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKL 122
           K   +  +    ++ L  L+ L +         +         ++L   N +   
Sbjct: 187 KN-HISDLRA--LAGLKNLDVLELFSQECLNKPIN------HQSNLVVPNTVKNT 232

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 2/123 (1%)

Query: 4   LALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRL 63
           +           L+ L+L    + D+       KL  L L  + +  +  E      +  
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTW 218

Query: 64  LNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLT 123
           ++L    +L +I    +     LE   +  +    G +     + +         + KLT
Sbjct: 219 ISLRNN-KLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276

Query: 124 SLE 126
              
Sbjct: 277 GQN 279

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 17/122 (13%), Positives = 45/122 (36%), Gaps = 20/122 (16%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNL 66
              L  L  L+TL L++  + +   +     +  L    +++  ++   GQ    + + L
Sbjct: 73  TLDLESLSTLRTLDLNNNYVQE---LLVGPSIETLHAANNNISRVSCSRGQ--GKKNIYL 127

Query: 67  SKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLE 126
           +   ++ ++        SR++ L +  + I               +++     +   +LE
Sbjct: 128 ANN-KITMLRDLDEGCRSRVQYLDLKLNEID--------------TVNFAELAASSDTLE 172

Query: 127 IL 128
            L
Sbjct: 173 HL 174

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 16/96 (16%)

Query: 31  IIGDLKKLVILALRGSDMEELAGEIGQ-LTQLRLLNLSKCFELKVIPPNVISSLSRLEEL 89
           I  +  +  I  +  S +++    + Q    ++ L+LS    L  I    ++  ++LE L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELL 63

Query: 90  YIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSL 125
            +  + +                  +L +LS L +L
Sbjct: 64  NLSSNVLY--------------ETLDLESLSTLRTL 85

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 6/90 (6%)

Query: 5  ALPSSLGLLQNLQTLSLDDCELGDM--AIIGDLKKLVILALRGSDMEEL-AGEIGQLTQL 61
          A+          +   + D  L     ++      +  L L G+ + ++ A ++   T+L
Sbjct: 1  AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 62 RLLNLSKCFELKVIPPNVISSLSRLEELYI 91
           LLNLS    L       + SLS L  L +
Sbjct: 61 ELLNLSSN-VLYETLD--LESLSTLRTLDL 87

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 15/122 (12%), Positives = 41/122 (33%), Gaps = 19/122 (15%)

Query: 8   SSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNL 66
             L +  +++TL   +  +  ++     +    + L  + +  L   + G  ++++ L+L
Sbjct: 93  QELLVGPSIETLHAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151

Query: 67  SKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLE 126
                  V    + +S   LE L +                 +   + ++        L+
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNL-----------------QYNFIYDVKGQVVFAKLK 194

Query: 127 IL 128
            L
Sbjct: 195 TL 196

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.0 bits (120), Expect = 9e-07
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 7/91 (7%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMA--IIGDLKKLVILALRG----SDMEELAGEIGQLTQ 60
            S    L  L+ L+L    L   +  +   L  L  L L+G        +    +  L +
Sbjct: 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477

Query: 61  LRLLNLSKCFELKVIPPNVISSLSRLEELYI 91
           L +L LS C +L  I  +  +SL  +  + +
Sbjct: 478 LEILVLSFC-DLSSIDQHAFTSLKMMNHVDL 507

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 17/127 (13%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDM--AIIGDLKKLVILALRGSDMEEL--AGEIGQLTQLR 62
              L  L +LQ+L+L   E   +      +  +L +L L  + ++          L  L+
Sbjct: 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428

Query: 63  LLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKL 122
           +LNLS    L +    +   L  L+ L +  +    G            ++ + N+L  L
Sbjct: 429 VLNLSHSL-LDISSEQLFDGLPALQHLNLQGNHFPKG------------NIQKTNSLQTL 475

Query: 123 TSLEILI 129
             LEIL+
Sbjct: 476 GRLEILV 482

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 16/122 (13%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDM--AIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRL 63
            ++   L NL  L L  C++  +         +L  L L  + +  +    +     L+ 
Sbjct: 50  NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH 109

Query: 64  LNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLT 123
           L   +   +  I    + +   LE LY+G + I             +  L +     KL 
Sbjct: 110 LFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHIS------------SIKLPKGFPTEKLK 156

Query: 124 SL 125
            L
Sbjct: 157 VL 158

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 12/121 (9%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDM-AIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLL 64
            ++      LQ L L    L ++ + +  L  L  L L  +  E L          L  L
Sbjct: 271 SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330

Query: 65  NLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTS 124
           ++    +   +    + +L  L EL +    I          E  +    +L NLS L S
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDI----------ETSDCCNLQLRNLSHLQS 380

Query: 125 L 125
           L
Sbjct: 381 L 381

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 16/88 (18%), Positives = 25/88 (28%), Gaps = 4/88 (4%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMA--IIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRL 63
             +      L TL L    L  MA   +   K L  L    + +  +    +     L  
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133

Query: 64  LNLSKCFELKVIPPNVISSLSRLEELYI 91
           L L     +  I         +L+ L  
Sbjct: 134 LYLGSNH-ISSIKLPKGFPTEKLKVLDF 160

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 3/93 (3%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMA--IIGDLKKLVILALRGSDMEELAGEIGQLTQLRLL 64
            +SL  L  L+ L L  C+L  +       LK +  + L  + +   + E     +   L
Sbjct: 469 TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYL 528

Query: 65  NLSKCFELKVIPPNVISSLSRLEELYIGQSPIQ 97
           NL+    + +I P+++  LS+   + + Q+P+ 
Sbjct: 529 NLASN-HISIILPSLLPILSQQRTINLRQNPLD 560

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 28/125 (22%), Positives = 41/125 (32%), Gaps = 18/125 (14%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDM--AIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRL 63
             S      LQ L L  CE+  +       L  L  L L G+ ++    G    LT L  
Sbjct: 49  SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108

Query: 64  LNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLT 123
           L   +   L  +    I  L  L++L +  + I               S       S LT
Sbjct: 109 LVAVETK-LASLESFPIGQLITLKKLNVAHNFIH--------------SCKLPAYFSNLT 153

Query: 124 SLEIL 128
           +L  +
Sbjct: 154 NLVHV 158

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 4/94 (4%)

Query: 6   LPSSLGLLQNLQTLSLDDCELGDM--AIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLR 62
           L +      NL  L L  C+L  +   +   L +L +L +  +++  L +    QL  L 
Sbjct: 465 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524

Query: 63  LLNLSKCFELKVIPPNVISSLSRLEELYIGQSPI 96
            L+ S    ++     +      L    +  + +
Sbjct: 525 TLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 4/100 (4%)

Query: 2   HLLALPSSLGLLQNLQTLSLDDCELGDMA---IIGDLKKLVILALRGSDMEEL-AGEIGQ 57
             + + ++   L+ LQ L      L  +        L+KL+ L +  ++ +    G    
Sbjct: 387 GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446

Query: 58  LTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQ 97
           LT L  L ++          NV ++ + L  L + +  ++
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMA--IIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRL 63
             +   L +L  L L    +   +      L  L  L    + +  L +  IGQL  L+ 
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132

Query: 64  LNLSKCFELKVIPPNVISSLSRLEELYI 91
           LN++  F      P   S+L+ L  + +
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDL 160

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 24/152 (15%), Positives = 49/152 (32%), Gaps = 16/152 (10%)

Query: 4   LALPSSLGLLQNLQTLSLDDCEL-----GDMAIIGDLKK-LVILALRGSDMEELAGEIGQ 57
             LP+    L NL  + L    +      D+  + +  +  + L +  + ++ +  +  Q
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ 202

Query: 58  LTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDE-- 115
             +L  L L   F    I    + +L+ L    +     +         ER     +   
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK--------DERNLEIFEPSI 254

Query: 116 LNNLSKLTSLEILIQDEKTLPRDLSFFKMLQR 147
           +  L  +T  E  +        D+  F  L  
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLAN 286

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 13/115 (11%)

Query: 13  LQNLQTLSLDDCELGDM--AIIGDLKKLVILALRGSDMEEL--AGEIGQLTQLRLLNLSK 68
           L +L+ L L    L ++  +    L  L  L L G+  + L        LT+L++L +  
Sbjct: 99  LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158

Query: 69  CFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLT 123
                 I     + L+ LEEL I  S +Q    E         SL  + N+S L 
Sbjct: 159 MDTFTKIQRKDFAGLTFLEELEIDASDLQ--SYE-------PKSLKSIQNVSHLI 204

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 10/92 (10%)

Query: 13  LQNLQTLSLDDC---ELGDMAIIGDLKKLVILALRGSDMEEL----AGEIGQLTQLRLLN 65
           L +L  L+L       LG+ ++   L KL IL +   +M+        +   LT L  L 
Sbjct: 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV--GNMDTFTKIQRKDFAGLTFLEELE 180

Query: 66  LSKCFELKVIPPNVISSLSRLEELYIGQSPIQ 97
           +    +L+   P  + S+  +  L +      
Sbjct: 181 IDAS-DLQSYEPKSLKSIQNVSHLILHMKQHI 211

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.0 bits (112), Expect = 7e-06
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 4/88 (4%)

Query: 13  LQNLQTLSLDDCELGDMA--IIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKC 69
           L  L+ L+L    +  +   ++ +L +L  + L G  +  +       L  LR+LN+S  
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306

Query: 70  FELKVIPPNVISSLSRLEELYIGQSPIQ 97
            +L  +  +V  S+  LE L +  +P+ 
Sbjct: 307 -QLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 4/95 (4%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMA--IIGDLKKLVILALRGSD-MEELAGEIGQLTQLRL 63
             +L  L  L  L L    +  +       L +L +L +     ++ +         L  
Sbjct: 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS 228

Query: 64  LNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQW 98
           L+++ C  L  +P   +  L  L  L +  +PI  
Sbjct: 229 LSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPIST 262

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 28/118 (23%), Positives = 41/118 (34%), Gaps = 16/118 (13%)

Query: 13  LQNLQTLSLDDCELGDMA--IIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKC 69
           L NL  L + + ++  +   +  DL  L  L +  +D+  +       L  L  L L KC
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162

Query: 70  FELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEI 127
             L  IP   +S L  L  L +    I                      L +L  LEI
Sbjct: 163 -NLTSIPTEALSHLHGLIVLRLRHLNIN------------AIRDYSFKRLYRLKVLEI 207

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 4/99 (4%)

Query: 2   HLLALPSSLGLLQNLQTLSLDDCELGDMA--IIGDLKKLVILALRGSDMEELAGEI-GQL 58
           +L  +  +     NL +LS+  C L  +    +  L  L  L L  + +  + G +  +L
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271

Query: 59  TQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQ 97
            +L+ + L    +L V+ P     L+ L  L +  + + 
Sbjct: 272 LRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 6/93 (6%)

Query: 2   HLLALPSSLGLLQNLQTLSLDDCELG--DMAIIGDLKKLVILALRGSDMEELAGEI-GQL 58
             +A+P   G+    + L L    +   +         L  L L  + +  +       L
Sbjct: 22  RFVAVPE--GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNL 79

Query: 59  TQLRLLNLSKCFELKVIPPNVISSLSRLEELYI 91
             LR L L     LK+IP  V + LS L +L I
Sbjct: 80  FNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDI 111

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 21/126 (16%), Positives = 50/126 (39%), Gaps = 5/126 (3%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMA--IIGDLKKLVILALRGSDMEELAGEI-GQLTQLRL 63
             +      +Q L +    +  +   +  ++  L +L L  +D+  L   I     +L  
Sbjct: 86  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145

Query: 64  LNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDG-ERRNASLDELNNLSKL 122
           L++S    L+ I  +   + + L+ L +  + +    +  +      N S + L+ L+  
Sbjct: 146 LSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 204

Query: 123 TSLEIL 128
            ++E L
Sbjct: 205 IAVEEL 210

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 4/87 (4%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMA--IIGDLKKLVILALRGSDMEELAGEIGQLTQLRLL 64
            + L     L  + L   EL  +       +++L  L +  + +  L      +  L++L
Sbjct: 241 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 300

Query: 65  NLSKCFELKVIPPNVISSLSRLEELYI 91
           +LS    L  +  N      RLE LY+
Sbjct: 301 DLSHN-HLLHVERN-QPQFDRLENLYL 325

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 13/82 (15%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 13  LQNLQTLSLDDCELGDM--AIIGDLKKLVILALRGSDMEELAGEI-GQLTQLRLLNLSKC 69
           L N + ++  +  +  +  A++   +++ +L L    +EE+          ++ L +   
Sbjct: 44  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103

Query: 70  FELKVIPPNVISSLSRLEELYI 91
             ++ +PP+V  ++  L  L +
Sbjct: 104 -AIRYLPPHVFQNVPLLTVLVL 124

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 13/93 (13%), Positives = 31/93 (33%), Gaps = 5/93 (5%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDM-AIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLN 65
                 +Q L+ L + +  L  +      +  L +L L  + +  +     Q  +L  L 
Sbjct: 265 YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 324

Query: 66  LSKCFELKVIPPNVISSLSRLEELYIGQSPIQW 98
           L     +  +  +   +   L+ L +  +    
Sbjct: 325 LDHN-SIVTLKLS---THHTLKNLTLSHNDWDC 353

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 13/123 (10%)

Query: 11  GLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCF 70
            L   L+ L + + +L  +  + +   L I+ +  + +++L      L  +   N     
Sbjct: 128 DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ--- 184

Query: 71  ELKVIPPNVISSLSRLEELY-----IGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSL 125
            L+ +P   + +L  L  +Y     + + P     +E +     N  L+EL  L  L  L
Sbjct: 185 -LEELPE--LQNLPFLTAIYADNNSLKKLPDLPLSLESIV--AGNNILEELPELQNLPFL 239

Query: 126 EIL 128
             +
Sbjct: 240 TTI 242

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 28/126 (22%), Positives = 45/126 (35%), Gaps = 23/126 (18%)

Query: 2   HLLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQL 61
            L  LP  L     L+ + +D+  L    +      L  +A   + +EEL  E+  L  L
Sbjct: 142 QLEKLPE-LQNSSFLKIIDVDNNSLKK--LPDLPPSLEFIAAGNNQLEELP-ELQNLPFL 197

Query: 62  RLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSK 121
             +       LK +P         LE +  G + ++               L EL NL  
Sbjct: 198 TAIYADNN-SLKKLPD----LPLSLESIVAGNNILE--------------ELPELQNLPF 238

Query: 122 LTSLEI 127
           LT++  
Sbjct: 239 LTTIYA 244

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 8/96 (8%)

Query: 2   HLLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQL 61
            L  LP       +L+++   +  L ++  + +L  L  +    + ++ L      L  L
Sbjct: 206 SLKKLPDLPL---SLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEAL 262

Query: 62  RLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQ 97
            + +      L  + P +  SL+ L+      S + 
Sbjct: 263 NVRDNY----LTDL-PELPQSLTFLDVSENIFSGLS 293

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 23/116 (19%), Positives = 39/116 (33%), Gaps = 24/116 (20%)

Query: 12  LLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFE 71
           L +    L L++  L    +      L  L    + + EL      L  L + N +    
Sbjct: 69  LDRQAHELELNNLGLSS--LPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLK-A 125

Query: 72  LKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEI 127
           L  +PP        LE L +  + ++               L EL N S L  +++
Sbjct: 126 LSDLPPL-------LEYLGVSNNQLE--------------KLPELQNSSFLKIIDV 160

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.1 bits (106), Expect = 3e-05
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 2   HLLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRG---SDMEELAGEIGQL 58
            L ALP +L  L+ L+ L   D  L ++  + +L +L  L L          +   +   
Sbjct: 474 RLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQ-PLVSC 532

Query: 59  TQLRLLNLS--KCFELKVIPPNVISSLSRLEEL 89
            +L LLNL      + + I   +   L  +  +
Sbjct: 533 PRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 29/114 (25%), Positives = 42/114 (36%), Gaps = 12/114 (10%)

Query: 13  LQNLQTLSLDDCELGDMA--IIGDLKKLVILALRGSDMEELAGEI-GQLTQLRLLNLSKC 69
              LQ L L  CE+  +       L  L  L L G+ ++ LA      L+ L+ L   + 
Sbjct: 51  FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110

Query: 70  FELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLT 123
             L  +    I  L  L+EL +  + IQ  K+              L NL  L 
Sbjct: 111 -NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--------FSNLTNLEHLD 155

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 9/93 (9%)

Query: 13  LQNLQTLSLDDCELGDMA--IIGDLKKLVILALRGSDMEEL--AGEIGQLTQLRLLNLSK 68
           L +LQ L   +  L  +    IG LK L  L +  + ++          LT L  L+LS 
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 69  CFELKVIPPNVISSLSRLE----ELYIGQSPIQ 97
             +++ I    +  L ++      L +  +P+ 
Sbjct: 159 N-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 10/97 (10%)

Query: 4   LALPSSLGLLQNLQTLSLDDCELGDM---AIIGDLKKLVILALRGSDMEEL------AGE 54
           L +   L  + +LQ L L+              +   L  L L  + ++           
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475

Query: 55  IGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYI 91
              L+ L++L L+  + L  +PP V S L+ L  L +
Sbjct: 476 FEGLSHLQVLYLNHNY-LNSLPPGVFSHLTALRGLSL 511

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 31/127 (24%), Positives = 44/127 (34%), Gaps = 19/127 (14%)

Query: 7   PSSLGLLQNLQTLSLDDCELG---DMAIIGDLKKLVILALRGSDMEELAGEI-GQLTQLR 62
            SS   L+ LQ L L         D     +L  L IL L  S +  L  +    L  L 
Sbjct: 41  ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100

Query: 63  LLNLSKCF-ELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSK 121
            L L  C     V+      +L  L  L + ++ I+              SL    +  K
Sbjct: 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR--------------SLYLHPSFGK 146

Query: 122 LTSLEIL 128
           L SL+ +
Sbjct: 147 LNSLKSI 153

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 55/362 (15%), Positives = 113/362 (31%), Gaps = 69/362 (19%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMAI----IGDLKKLVILALRGSDMEEL--AGEIGQLTQ 60
           P +   L +L  L L  C L D  +      +LK L  L L  + +  L      G+L  
Sbjct: 90  PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS 149

Query: 61  LRLLNLSKCFELKVIPPNVISSLS--RLEELYIGQSPIQWGKVEGVDGERRNASLDELNN 118
           L+ ++ S    + ++  + +  L    L    +  + +           R +    +  N
Sbjct: 150 LKSIDFSSNQ-IFLVCEHELEPLQGKTLSFFSLAANSLY---------SRVSVDWGKCMN 199

Query: 119 LSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANI 178
             +   LEIL         D+S                  +  + IS+     L    +I
Sbjct: 200 PFRNMVLEIL---------DVSGNG--------WTVDITGNFSNAISKSQAFSLILAHHI 242

Query: 179 CLNEGHIMQLKRIEDLTSGGDS----EALYTSFKNVENGMEAMMRGINHRREL------- 227
                    +K  +  T  G +      L  S   V +    +   +   + L       
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302

Query: 228 KQIFKQESSNAKDLEKLSIFMCDNLTHLVPSS-TSFQNLTTLTVWGCHGMINVLTSSTAR 286
            +I  +      +L+ L++     L  L  S+      +  + +   H  I ++   T +
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNH--IAIIQDQTFK 359

Query: 287 SLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLS--NLQSLTSFSCS 344
            L +L+ + ++   +                         + ++ LS   L +L   + +
Sbjct: 360 FLEKLQTLDLRDNAL-----------------TTIHFIPSIPDIFLSGNKLVTLPKINLT 402

Query: 345 GN 346
            N
Sbjct: 403 AN 404

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 23/123 (18%), Positives = 51/123 (41%), Gaps = 17/123 (13%)

Query: 6   LPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLN 65
           + ++L  L+  + L+L    +  ++ +  ++ L IL+L  + ++++         L  L 
Sbjct: 40  MDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELW 99

Query: 66  LSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSL 125
           +S   ++  +    I  L  L  LY+  + I               +  E++ L+ L  L
Sbjct: 100 ISYN-QIASLSG--IEKLVNLRVLYMSNNKIT--------------NWGEIDKLAALDKL 142

Query: 126 EIL 128
           E L
Sbjct: 143 EDL 145

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 4/87 (4%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMA--IIGDLKKLVILALRGSDMEELAGEIGQLTQLRLL 64
            + L     L  + L   EL  +       +++L  L +  + +  L      +  L++L
Sbjct: 247 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 306

Query: 65  NLSKCFELKVIPPNVISSLSRLEELYI 91
           +LS    L  +  N      RLE LY+
Sbjct: 307 DLSHN-HLLHVERN-QPQFDRLENLYL 331

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.8 bits (103), Expect = 7e-05
 Identities = 13/93 (13%), Positives = 31/93 (33%), Gaps = 5/93 (5%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDM-AIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLN 65
                 +Q L+ L + +  L  +      +  L +L L  + +  +     Q  +L  L 
Sbjct: 271 YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 330

Query: 66  LSKCFELKVIPPNVISSLSRLEELYIGQSPIQW 98
           L     +  +  +   +   L+ L +  +    
Sbjct: 331 LDHN-SIVTLKLS---THHTLKNLTLSHNDWDC 359

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 13/82 (15%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 13  LQNLQTLSLDDCELGDM--AIIGDLKKLVILALRGSDMEELAGEI-GQLTQLRLLNLSKC 69
           L N + ++  +  +  +  A++   +++ +L L    +EE+          ++ L +   
Sbjct: 50  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109

Query: 70  FELKVIPPNVISSLSRLEELYI 91
             ++ +PP+V  ++  L  L +
Sbjct: 110 -AIRYLPPHVFQNVPLLTVLVL 130

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 21/126 (16%), Positives = 50/126 (39%), Gaps = 5/126 (3%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMA--IIGDLKKLVILALRGSDMEELAGEI-GQLTQLRL 63
             +      +Q L +    +  +   +  ++  L +L L  +D+  L   I     +L  
Sbjct: 92  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 151

Query: 64  LNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDG-ERRNASLDELNNLSKL 122
           L++S    L+ I  +   + + L+ L +  + +    +  +      N S + L+ L+  
Sbjct: 152 LSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 210

Query: 123 TSLEIL 128
            ++E L
Sbjct: 211 IAVEEL 216

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 20/131 (15%)

Query: 13  LQNLQTLSLDDCELGDM--AIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKC 69
           L+NL+TL + D +L  +   +   L  L  L L  + ++ L       LT+L  L+L   
Sbjct: 84  LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143

Query: 70  FELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDE--LNNLSKLTSLEI 127
            EL+ +P  V   L+ L+EL +  + ++               + E   + L++L +L++
Sbjct: 144 -ELQSLPKGVFDKLTSLKELRLYNNQLK--------------RVPEGAFDKLTELKTLKL 188

Query: 128 LIQDEKTLPRD 138
                K +P  
Sbjct: 189 DNNQLKRVPEG 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 7/99 (7%)

Query: 3   LLALPSSLGLLQNLQTLSLDDCELGDMAIIGD---LKKLVILALRGSDMEEL-AGEIGQL 58
           L  +P    L      L L    L  +        L  L  L L  + +  + +     +
Sbjct: 30  LPNVPQ--SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV 87

Query: 59  TQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQ 97
             LR L+LS    L  +   + S L  LE L +  + I 
Sbjct: 88  PNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNHIV 125

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 16/119 (13%)

Query: 13  LQNLQTLSLDDCELG--DMAIIGDLKKLVILALRGSDMEELAGEI-GQLTQLRLLNLSKC 69
           L NL +L L    L          +  L  L L  + +  L   +   L  L +L L   
Sbjct: 63  LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN 122

Query: 70  FELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEIL 128
             + V+  N    +++L++LY+ Q+ I                ++ + + +KL  L +L
Sbjct: 123 -HIVVVDRNAFEDMAQLQKLYLSQNQISR------------FPVELIKDGNKLPKLMLL 168

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 4/81 (4%)

Query: 13  LQNLQTLSLDDCELGDMA--IIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKC 69
           L  LQ L L D  L  +      DL  L  L L G+ +  +       L  L  L L + 
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187

Query: 70  FELKVIPPNVISSLSRLEELY 90
             +  + P+    L RL  LY
Sbjct: 188 -RVAHVHPHAFRDLGRLMTLY 207

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 5/99 (5%)

Query: 2   HLLALPSSLGLLQNLQTLSLDDCELG--DMAIIGDLKKLVILALRGSDMEEL-AGEIGQL 58
            L A+P   G+    Q + L    +     A     + L IL L  + +  + A     L
Sbjct: 22  GLQAVPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL 79

Query: 59  TQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQ 97
             L  L+LS   +L+ + P     L RL  L++ +  +Q
Sbjct: 80  ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 28/121 (23%), Positives = 43/121 (35%), Gaps = 22/121 (18%)

Query: 13  LQNLQTLSLDD----CELGDMAIIGDLKKLVILALRGSDMEELAGEI-GQLTQLRLLNLS 67
           L  L+ L L D      +      G L +L  L L    ++EL   +   L  L+ L L 
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHG-LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137

Query: 68  KCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEI 127
               L+ +P +    L  L  L++  + I               S+ E      L SL+ 
Sbjct: 138 DN-ALQALPDDTFRDLGNLTHLFLHGNRIS--------------SVPE-RAFRGLHSLDR 181

Query: 128 L 128
           L
Sbjct: 182 L 182

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 42/367 (11%), Positives = 108/367 (29%), Gaps = 58/367 (15%)

Query: 7   PSSLGLLQNLQTLSLDDCELG--DMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLL 64
            S +  L  L+ L +    +   D+++    ++L  L L  + + +++        L+ L
Sbjct: 38  TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHL 95

Query: 65  NLSKCFELKVIPPN-VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLT 123
           +LS       +P      ++S+L+ L +  + ++             +S+  + +L+   
Sbjct: 96  DLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLE------------KSSVLPIAHLNISK 142

Query: 124 SLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEG 183
            + +++ +      D    +      +             I   +  +     ++ +   
Sbjct: 143 -VLLVLGETYGEKEDPEGLQDFNTESL------------HIVFPTNKEFHFILDVSVKTV 189

Query: 184 HIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQ--ESSNAKDL 241
             ++L  I+ +          +    ++   +     +N+       F +  +      +
Sbjct: 190 ANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTV 249

Query: 242 EKLSIFMC--DNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKV- 298
              SI                S  +L  L++       +V     +        M IK  
Sbjct: 250 WYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVV--SDVFGFPQSYIYEIFSNMNIKNF 307

Query: 299 -CVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSN--LQSLTSFSCSGNNCAFKFPSL 355
                  +      +            S    L+ SN  L      +C           L
Sbjct: 308 TVSGTRMVHMLCPSK-----------ISPFLHLDFSNNLLTDTVFENCG------HLTEL 350

Query: 356 ERLVVNR 362
           E L++  
Sbjct: 351 ETLILQM 357

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 16/83 (19%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 13  LQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFEL 72
            ++L +L++    L D        ++ +L L  + ++ +  ++ +L  L+ LN++   +L
Sbjct: 398 TKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QL 456

Query: 73  KVIPPNVISSLSRLEELYIGQSP 95
           K +P  +   L+ L+++++  +P
Sbjct: 457 KSVPDGIFDRLTSLQKIWLHTNP 479

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 19/137 (13%), Positives = 35/137 (25%), Gaps = 11/137 (8%)

Query: 2   HLLALPSSLGLLQNLQTLSLDDCELGDM-AIIGDLKKLVILALRGSDMEELAGEIGQLTQ 60
            L +LP        L+ L +    L  +  +   L  L    +  + +  L   +  L+ 
Sbjct: 232 RLTSLPVLPS---ELKELMVSGNRLTSLPMLPSGLLSLS---VYRNQLTRLPESLIHLSS 285

Query: 61  LRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLS 120
              +NL     L       +  ++     Y G              E R   L       
Sbjct: 286 ETTVNLEGN-PLSERTLQALREITSA-PGYSGPIIRFDMAGASAPRETRA--LHLAAADW 341

Query: 121 KLTSLEILIQDEKTLPR 137
            + + E           
Sbjct: 342 LVPAREGEPAPADRWHM 358

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 12/91 (13%)

Query: 2   HLLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQL 61
            L  LP  L    ++ TL + D  L    +     +L  L + G+ +  L      L +L
Sbjct: 51  GLTTLPDCLP--AHITTLVIPDNNLTS--LPALPPELRTLEVSGNQLTSLPVLPPGLLEL 106

Query: 62  RLLNLSKCFELKVIPPNVISSLSRLEELYIG 92
            + +      L  +P         L +L+I 
Sbjct: 107 SIFSNPLT-HLPALPSG-------LCKLWIF 129

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 11/97 (11%)

Query: 4   LALPSSLGLLQNLQTLSLDDCEL--GDM-AIIGDLKKLVILALRGSDMEELAGEI----G 56
             +PSSL  L  L  L +       G +   I  L +L  L +  ++   ++G I     
Sbjct: 66  YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN---VSGAIPDFLS 122

Query: 57  QLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQ 93
           Q+  L  L+ S       +PP+ ISSL  L  +    
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDG 158

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 23/131 (17%)

Query: 3   LLALPSSLGLLQNLQTLSLDDC---ELGDMAIIGDLKKLVILALRGSDM-EEL-AGEIGQ 57
           +  +PS   L  + QTL L +     +   A    L  +  + +      ++L +     
Sbjct: 23  IQRIPS---LPPSTQTLKLIETHLRTIPSHAFSN-LPNISRIYVSIDVTLQQLESHSFYN 78

Query: 58  LTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELN 117
           L+++  + +     L  I P+ +  L  L+ L I  + ++                 +L 
Sbjct: 79  LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK--------------MFPDLT 124

Query: 118 NLSKLTSLEIL 128
            +       IL
Sbjct: 125 KVYSTDIFFIL 135

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 21/131 (16%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNL 66
             S   L  L +L   +  + DM  I  L  L  L    +++  L  ++ Q T L  L  
Sbjct: 35  TISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL--DLSQNTNLTYLAC 92

Query: 67  SKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELN--------- 117
               +L  +    ++ L++L  L    + +            +N  L  LN         
Sbjct: 93  DSN-KLTNLD---VTPLTKLTYLNCDTNKLT------KLDVSQNPLLTYLNCARNTLTEI 142

Query: 118 NLSKLTSLEIL 128
           ++S  T L  L
Sbjct: 143 DVSHNTQLTEL 153

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 16/119 (13%), Positives = 36/119 (30%), Gaps = 21/119 (17%)

Query: 9   SLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSK 68
            +     L  L     +      +    +L  L    + + EL  ++ Q   L  LN   
Sbjct: 143 DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL--DVSQNKLLNRLNCDT 200

Query: 69  CFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEI 127
              +  +    ++   +L  L    + +                +D +  L++LT  + 
Sbjct: 201 N-NITKLD---LNQNIQLTFLDCSSNKLT--------------EID-VTPLTQLTYFDC 240

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 6/132 (4%)

Query: 2   HLLALPSSLGL-LQNLQTLSLDD----CELGDMAIIGDLKKLVILALRGSDMEELAGEIG 56
            +  LP    +       L + D      +   + +G   + VIL L  + ++E+     
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF 174

Query: 57  QLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDEL 116
             TQL  LNLS    L+ +P +V    S    L I ++ I      G++  ++  +    
Sbjct: 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS-T 233

Query: 117 NNLSKLTSLEIL 128
            NL KL +LE L
Sbjct: 234 YNLKKLPTLEKL 245

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 8/101 (7%)

Query: 2   HLLALPSSLGLLQNLQTLSLDDC---ELGDMAIIGDLKKLVILALRGSDMEEL--AGEIG 56
            +  +PS   L +N   L         +   A  G    L  + +  +D+ E+  A    
Sbjct: 20  KVTEIPS--DLPRNAIELRFVLTKLRVIQKGAFSG-FGDLEKIEISQNDVLEVIEADVFS 76

Query: 57  QLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQ 97
            L +L  + + K   L  I P    +L  L+ L I  + I+
Sbjct: 77  NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 117

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 12/119 (10%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMA--IIGDLKKLVILALRGSDMEELAGEIGQLTQLRLL 64
                 L+NL TL L + ++  ++      L KL  L L  + ++EL         L+ L
Sbjct: 69  DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE--KMPKTLQEL 126

Query: 65  NLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLT 123
            + +  E+  +  +V + L+++  + +G +P++   +E       N +   +  LS + 
Sbjct: 127 RVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIE-------NGAFQGMKKLSYIR 177

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 16/125 (12%), Positives = 44/125 (35%), Gaps = 20/125 (16%)

Query: 4   LALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRL 63
           L     L  L  L+TL L++  + +   +     +  L    +++  +     +    + 
Sbjct: 70  LYETLDLESLSTLRTLDLNNNYVQE---LLVGPSIETLHAANNNISRV--SCSRGQGKKN 124

Query: 64  LNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLT 123
           + L+   ++ ++        SR++ L +  + I               +++     +   
Sbjct: 125 IYLANN-KITMLRDLDEGCRSRVQYLDLKLNEID--------------TVNFAELAASSD 169

Query: 124 SLEIL 128
           +LE L
Sbjct: 170 TLEHL 174

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 20/142 (14%), Positives = 44/142 (30%), Gaps = 23/142 (16%)

Query: 3   LLALPSSLGLLQNLQTLSLDD---CELGDMAIIGDLKKLVILALRGSDMEEL-AGEIGQL 58
           L  +P    + Q    L L++     L    I   L +L  +    + + ++  G     
Sbjct: 23  LNKIPE--HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA 80

Query: 59  TQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDE--L 116
           + +  + L+    L+ +   +   L  L+ L +  + I                +     
Sbjct: 81  SGVNEILLTSN-RLENVQHKMFKGLESLKTLMLRSNRIT--------------CVGNDSF 125

Query: 117 NNLSKLTSLEILIQDEKTLPRD 138
             LS +  L +      T+   
Sbjct: 126 IGLSSVRLLSLYDNQITTVAPG 147

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 6e-04
 Identities = 70/466 (15%), Positives = 150/466 (32%), Gaps = 115/466 (24%)

Query: 12  LLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLL------- 64
           +L   +   +D+ +  D   + D+ K +   L   +++ +      ++    L       
Sbjct: 21  ILSVFEDAFVDNFDCKD---VQDMPKSI---LSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74

Query: 65  --NLSKCFELKVIPPN---VISSL-------SRLEELYIGQSPIQWGKVEGVDGE--RRN 110
              + + F  +V+  N   ++S +       S +  +YI Q    +   +        R 
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134

Query: 111 ASLDELNN-LSKLTSLEILI-----------------QDEKTLPRDLSFFKMLQRYRILI 152
               +L   L +L   + ++                    K   +    FK+   + + +
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK--MDFKI---FWLNL 189

Query: 153 GDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGD-SEALYTSFKNVE 211
            +    +     + +  L+      +      I       + TS  D S  +     +++
Sbjct: 190 KNCNSPE-----TVLEMLQ-----KLLY---QIDP-----NWTSRSDHSSNIKLRIHSIQ 231

Query: 212 NGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNL-THLVPSSTSFQNLTTLTV 270
             +  +++   +   L  +      NAK     +   C  L T      T F +  T T 
Sbjct: 232 AELRRLLKSKPYENCL--LVLLNVQNAKAWNAFN-LSCKILLTTRFKQVTDFLSAATTTH 288

Query: 271 WGCHGMINVLTSSTARSLVRL----------RQM-TIK--VCVMITEIVADEDDEGDNYA 317
                    LT    +SL+            R++ T       +I E + D     DN+ 
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348

Query: 318 -----AQDEIVFSELKELNLSNLQSLTSFSCSGNNCA-F----KFPS--LERLVVNRCPN 365
                    I+ S L  L  +  + +  F    +  + F      P+  L  +  +    
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKM--F----DRLSVFPPSAHIPTILLSLIWFD---- 398

Query: 366 MKIFSEGELSTPKLQKVQMSLVDEKLWAWDRDLNTTIQYVYLKIKK 411
             I S+  +   KL K   SLV++      ++   +I  +YL++K 
Sbjct: 399 -VIKSDVMVVVNKLHK--YSLVEK----QPKESTISIPSIYLELKV 437

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 16/133 (12%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMA--IIGDLKKLVILALRGSDMEELAGEIGQLTQLRLL 64
                 LQ+L  L L + ++  +       L+KL  L +  + + E+       + L  L
Sbjct: 71  KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP--NLPSSLVEL 128

Query: 65  NLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDEL----NNLS 120
            +     ++ +P  V S L  +  + +G +P++    E   G      L+ L      L+
Sbjct: 129 RIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE--PGAFDGLKLNYLRISEAKLT 185

Query: 121 KL-----TSLEIL 128
            +      +L  L
Sbjct: 186 GIPKDLPETLNEL 198

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	411
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.94
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.94
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.94
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.94
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.94
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.94
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.94
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.93
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.93
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.93
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.93
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.93
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.92
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.92
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.92
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.92
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.91
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.91
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.91
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.91
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.89
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.89
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.89
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.89
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.88
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.88
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.87
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.87
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.87
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.86
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.86
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.84
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.84
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.84
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.84
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.83
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.83
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.83
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.82
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.82
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.82
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.82
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.8
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.79
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.79
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.78
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.78
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.77
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.77
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.77
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.77
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.76
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.75
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.75
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.74
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.74
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.74
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.73
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.72
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.72
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.72
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.7
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.7
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.7
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.69
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.69
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.68
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.68
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.68
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.67
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.66
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.65
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.65
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.63
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.63
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.62
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.61
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.61
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.6
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.58
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.58
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.57
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.57
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.56
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.56
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.56
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.55
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.53
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.52
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.52
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.49
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.49
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.47
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.46
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.46
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.45
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.44
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.43
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.42
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.42
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.4
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.4
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.4
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.38
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.37
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.36
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.35
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.35
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.34
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.34
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.34
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.28
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.27
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.25
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.24
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.24
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.23
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.22
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.22
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.2
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.17
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.16
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.96
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.81
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.8
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.76
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.69
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.63
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.53
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.49
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.49
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.48
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.29
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.27
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.24
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.23
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.06
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.92
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.86
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.77
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.74
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.51
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.2
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.96
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.9
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.31

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.95  E-value=1.1e-26  Score=234.07  Aligned_cols=135  Identities=14%  Similarity=0.040  Sum_probs=76.0

Q ss_pred             cCCCCCcEEEecCCcCCccCC-CCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCC
Q 038576          236 SNAKDLEKLSIFMCDNLTHLV-PSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGD  314 (411)
Q Consensus       236 ~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  314 (411)
                      ..+++|+.|+++++......+ .....+++|+.|++++|...... + ..++.+++|++|++++|.-.......      
T Consensus       396 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~-~~~~~l~~L~~L~l~~n~l~~~~~~~------  467 (606)
T 3vq2_A          396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF-D-GIFLGLTSLNTLKMAGNSFKDNTLSN------  467 (606)
T ss_dssp             TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC-T-TTTTTCTTCCEEECTTCEEGGGEECS------
T ss_pred             cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccc-h-hhhcCCCCCCEEECCCCcCCCcchHH------
Confidence            445556666665543222211 12233566666666665433222 2 23456666777777666522211111      


Q ss_pred             CccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCCCceEEEEecc
Q 038576          315 NYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMSLV  387 (411)
Q Consensus       315 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~~~  387 (411)
                           .+..+++|++|++++| .++.++  +... ..+++|++|++++|.-....|..+..+++|++|+++++
T Consensus       468 -----~~~~l~~L~~L~Ls~n-~l~~~~--~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  531 (606)
T 3vq2_A          468 -----VFANTTNLTFLDLSKC-QLEQIS--WGVF-DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN  531 (606)
T ss_dssp             -----CCTTCTTCCEEECTTS-CCCEEC--TTTT-TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred             -----hhccCCCCCEEECCCC-cCCccC--hhhh-cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence                 2335788888888887 455552  1111 34688999999887433334666777888999999633

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.94  E-value=6.7e-26  Score=228.21  Aligned_cols=136  Identities=18%  Similarity=0.130  Sum_probs=75.6

Q ss_pred             CCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCccc
Q 038576            3 LLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPPNV   79 (411)
Q Consensus         3 l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~~~   79 (411)
                      ++++|..+..  ++++|++++|.++.  +..|+++++|++|++++|.++.+ |..++++++|++|++++ +.+..+++..
T Consensus        24 l~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~  100 (606)
T 3t6q_A           24 LNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA-NPLIFMAETA  100 (606)
T ss_dssp             CSSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT-CCCSEECTTT
T ss_pred             cccCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC-CcccccChhh
Confidence            4566655543  56666666666665  45666666666666666666644 44566666666666666 3444443333


Q ss_pred             ccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCC-cccccCCCCcEEEEEec
Q 038576           80 ISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLP-RDLSFFKMLQRYRILIG  153 (411)
Q Consensus        80 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~i~~~  153 (411)
                      ++++++|++|++++|.+..            ..+..+.++++|++|++++|....++ +.+..+++|++|++..+
T Consensus       101 ~~~l~~L~~L~L~~n~i~~------------l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  163 (606)
T 3t6q_A          101 LSGPKALKHLFFIQTGISS------------IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN  163 (606)
T ss_dssp             TSSCTTCCEEECTTSCCSC------------GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS
T ss_pred             hcccccccEeeccccCccc------------CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccC
Confidence            6666666666666666543            11234455555555555555544331 12223455555555443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.94  E-value=5.9e-27  Score=236.63  Aligned_cols=317  Identities=16%  Similarity=0.213  Sum_probs=181.2

Q ss_pred             CccccccccCcEEEeeCCcccc------------------chHHhc--CCCCCCEEecCCCCCccccCcccccCCCCccE
Q 038576           29 MAIIGDLKKLVILALRGSDMEE------------------LAGEIG--QLTQLRLLNLSKCFELKVIPPNVISSLSRLEE   88 (411)
Q Consensus        29 ~~~l~~l~~L~~L~L~~~~l~~------------------lp~~i~--~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~   88 (411)
                      |..++++++|++|++++|.++.                  +|..++  ++++|++|++++|.....+|.. ++++++|++
T Consensus       199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~  277 (636)
T 4eco_A          199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQL  277 (636)
T ss_dssp             CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCE
T ss_pred             CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCE
Confidence            5567888899999999988887                  888888  8999999999987767777866 888999999


Q ss_pred             EEecccc-cccCccccccccccccchhhccCC------CCCCEEEEeeccCCcCCc--ccccCCCCcEEEEEecCCc-cc
Q 038576           89 LYIGQSP-IQWGKVEGVDGERRNASLDELNNL------SKLTSLEILIQDEKTLPR--DLSFFKMLQRYRILIGDSR-EY  158 (411)
Q Consensus        89 L~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l------~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~i~~~~~~-~~  158 (411)
                      |++++|. +.+..+|           ..++++      ++|++|++++|....+|.  .++.+++|++|++..+... .+
T Consensus       278 L~Ls~n~~l~~~~lp-----------~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~i  346 (636)
T 4eco_A          278 INVACNRGISGEQLK-----------DDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL  346 (636)
T ss_dssp             EECTTCTTSCHHHHH-----------HHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred             EECcCCCCCccccch-----------HHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccch
Confidence            9998887 4310122           444443      777777777777667776  6777777777777766655 55


Q ss_pred             cCcCCccceeEEEecCCccccccccccccccc-chhcccCCCccc------------------------------ccc--
Q 038576          159 DAWDGISRISKLKLTNGANICLNEGHIMQLKR-IEDLTSGGDSEA------------------------------LYT--  205 (411)
Q Consensus       159 ~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~------------------------------~~~--  205 (411)
                      |.+....+++.|++..+....+.. .+..+.. ++.+........                              .+.  
T Consensus       347 p~~~~l~~L~~L~L~~N~l~~lp~-~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~  425 (636)
T 4eco_A          347 PAFGSEIKLASLNLAYNQITEIPA-NFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL  425 (636)
T ss_dssp             CCCEEEEEESEEECCSSEEEECCT-TSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred             hhhCCCCCCCEEECCCCccccccH-hhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence            544445566666655432221111 1222222 222221111000                              011  


Q ss_pred             -----ccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCCccCCCCC-CC-------CCCcCeEeecC
Q 038576          206 -----SFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSS-TS-------FQNLTTLTVWG  272 (411)
Q Consensus       206 -----~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~-------~~~L~~L~l~~  272 (411)
                           .+++|++|      ++.++. +..++......+++|++|+++++. +...+... ..       +++|+.|++++
T Consensus       426 ~~~~~~~~~L~~L------~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~  497 (636)
T 4eco_A          426 DPTPFKGINVSSI------NLSNNQ-ISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRF  497 (636)
T ss_dssp             CSSCCCCCCEEEE------ECCSSC-CCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCS
T ss_pred             ccccccCCCCCEE------ECcCCc-cCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcC
Confidence                 22344444      444433 223332222345666666666533 22222211 10       11666666666


Q ss_pred             CCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCc------CCceeccCCC
Q 038576          273 CHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQ------SLTSFSCSGN  346 (411)
Q Consensus       273 c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~------~l~~~~~~~~  346 (411)
                      |. ++.++.......+++|+.|+++++. ++.++.            ....+++|+.|+++++.      -...+|   .
T Consensus       498 N~-l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~------------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p---~  560 (636)
T 4eco_A          498 NK-LTKLSDDFRATTLPYLVGIDLSYNS-FSKFPT------------QPLNSSTLKGFGIRNQRDAQGNRTLREWP---E  560 (636)
T ss_dssp             SC-CCBCCGGGSTTTCTTCCEEECCSSC-CSSCCC------------GGGGCSSCCEEECCSCBCTTCCBCCCCCC---T
T ss_pred             Cc-CCccChhhhhccCCCcCEEECCCCC-CCCcCh------------hhhcCCCCCEEECCCCcccccCcccccCh---H
Confidence            54 3344321111256677777776654 444433            23347788888885432      122231   1


Q ss_pred             cccccCCCcceEeecCCCCCccccCCCCCCCCceEEEEecc
Q 038576          347 NCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMSLV  387 (411)
Q Consensus       347 ~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~~~  387 (411)
                      .. ..+++|++|++++| .+..+|..+.  ++|+.|++++|
T Consensus       561 ~l-~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N  597 (636)
T 4eco_A          561 GI-TLCPSLTQLQIGSN-DIRKVNEKIT--PNISVLDIKDN  597 (636)
T ss_dssp             TG-GGCSSCCEEECCSS-CCCBCCSCCC--TTCCEEECCSC
T ss_pred             HH-hcCCCCCEEECCCC-cCCccCHhHh--CcCCEEECcCC
Confidence            11 34688888888886 4577887653  78888888633

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.94  E-value=1.5e-25  Score=225.64  Aligned_cols=95  Identities=20%  Similarity=0.244  Sum_probs=70.4

Q ss_pred             CCCC-ChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCcc
Q 038576            3 LLAL-PSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPPN   78 (411)
Q Consensus         3 l~~l-p~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~~   78 (411)
                      ++.+ |..|+++.+|++|++++|.++.  +..|+++++|++|++++|.++.+ |..++++++|++|++++ +.+..++..
T Consensus        45 i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~l~~~  123 (606)
T 3t6q_A           45 LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ-TGISSIDFI  123 (606)
T ss_dssp             CSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTT-SCCSCGGGS
T ss_pred             cCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccc-cCcccCCcc
Confidence            3444 4568888888888888888776  67788888888888888887754 55678888888888888 466666433


Q ss_pred             cccCCCCccEEEeccccccc
Q 038576           79 VISSLSRLEELYIGQSPIQW   98 (411)
Q Consensus        79 ~l~~L~~L~~L~l~~~~~~~   98 (411)
                      .++++++|++|++++|.+..
T Consensus       124 ~~~~l~~L~~L~L~~n~l~~  143 (606)
T 3t6q_A          124 PLHNQKTLESLYLGSNHISS  143 (606)
T ss_dssp             CCTTCTTCCEEECCSSCCCC
T ss_pred             hhccCCcccEEECCCCcccc
Confidence            37777778888777776654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.94  E-value=4.2e-25  Score=222.40  Aligned_cols=244  Identities=14%  Similarity=0.087  Sum_probs=153.7

Q ss_pred             CCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCCccceeEEEecCCcccc------------------
Q 038576          118 NLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANIC------------------  179 (411)
Q Consensus       118 ~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~~~~~~~~------------------  179 (411)
                      .+++|+.+++.++....+| .+..+++|++|++..+....+|.+ ...+++.|++..+....                  
T Consensus       283 ~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n  360 (606)
T 3vq2_A          283 CLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN  360 (606)
T ss_dssp             GGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSS
T ss_pred             cCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccchhhccCCCCCEEECcCC
Confidence            3455555555555555555 555666777777776666666655 55566666655542111                  


Q ss_pred             ----cc--cccccccccchhcccCCCcc----ccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCC
Q 038576          180 ----LN--EGHIMQLKRIEDLTSGGDSE----ALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMC  249 (411)
Q Consensus       180 ----~~--~~~~~~~~~l~~~~~~~~~~----~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c  249 (411)
                          ..  ...+..++.++.+.......    ..+..+++|++|      .+.++.-....+......+++|++|++++|
T Consensus       361 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L------~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  434 (606)
T 3vq2_A          361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHL------DFQHSTLKRVTEFSAFLSLEKLLYLDISYT  434 (606)
T ss_dssp             CEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEE------ECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred             ccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCee------ECCCCccCCccChhhhhccccCCEEECcCC
Confidence                00  11122233333333222211    134456777777      777765332223244568899999999997


Q ss_pred             cCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCe
Q 038576          250 DNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKE  329 (411)
Q Consensus       250 ~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~  329 (411)
                      ......+.....+++|+.|++++|.......+ ..++.+++|+.|++++|. ++.+...           .+..+++|++
T Consensus       435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~-----------~~~~l~~L~~  501 (606)
T 3vq2_A          435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS-NVFANTTNLTFLDLSKCQ-LEQISWG-----------VFDTLHRLQL  501 (606)
T ss_dssp             CCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSC-CCEECTT-----------TTTTCTTCCE
T ss_pred             CCCccchhhhcCCCCCCEEECCCCcCCCcchH-HhhccCCCCCEEECCCCc-CCccChh-----------hhcccccCCE
Confidence            65544444455599999999999865442222 245789999999999986 5555432           2335899999


Q ss_pred             eecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCC-CceEEEEecc
Q 038576          330 LNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTP-KLQKVQMSLV  387 (411)
Q Consensus       330 L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~-~L~~l~l~~~  387 (411)
                      |+++++ .+++++  +... ..+++|++|++++| +++.+|..+..++ +|++|++.+|
T Consensus       502 L~Ls~N-~l~~~~--~~~~-~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N  555 (606)
T 3vq2_A          502 LNMSHN-NLLFLD--SSHY-NQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNN  555 (606)
T ss_dssp             EECCSS-CCSCEE--GGGT-TTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSC
T ss_pred             EECCCC-cCCCcC--HHHc-cCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCC
Confidence            999998 455551  1111 34699999999997 5889998877776 5999999643

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.94  E-value=2.6e-25  Score=217.42  Aligned_cols=304  Identities=21%  Similarity=0.218  Sum_probs=231.4

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCcc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPPN   78 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~~   78 (411)
                      .++.+|..+.  .++++|++++|.++.  +..|.++++|++|++++|.++.+ |..++++++|++|++++ +.++.+|..
T Consensus        22 ~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~   98 (477)
T 2id5_A           22 RFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS-NRLKLIPLG   98 (477)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCTT
T ss_pred             CcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC-CcCCccCcc
Confidence            4677887664  589999999999988  57899999999999999999866 67799999999999999 678889877


Q ss_pred             cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCC-cccccCCCCcEEEEEecCCcc
Q 038576           79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLP-RDLSFFKMLQRYRILIGDSRE  157 (411)
Q Consensus        79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~i~~~~~~~  157 (411)
                      .++++++|++|++++|.+..            ..+..+.++++|++|++++|....++ ..+..+++|++|++..+....
T Consensus        99 ~~~~l~~L~~L~Ls~n~i~~------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  166 (477)
T 2id5_A           99 VFTGLSNLTKLDISENKIVI------------LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS  166 (477)
T ss_dssp             SSTTCTTCCEEECTTSCCCE------------ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS
T ss_pred             cccCCCCCCEEECCCCcccc------------CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc
Confidence            68899999999999998865            34467889999999999999866654 467788999999988554332


Q ss_pred             ccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccC
Q 038576          158 YDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSN  237 (411)
Q Consensus       158 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~  237 (411)
                      ++.                                         ..+..+++|+.|      .+.++. +..+....+..
T Consensus       167 ~~~-----------------------------------------~~l~~l~~L~~L------~l~~n~-i~~~~~~~~~~  198 (477)
T 2id5_A          167 IPT-----------------------------------------EALSHLHGLIVL------RLRHLN-INAIRDYSFKR  198 (477)
T ss_dssp             CCH-----------------------------------------HHHTTCTTCCEE------EEESCC-CCEECTTCSCS
T ss_pred             cCh-----------------------------------------hHhcccCCCcEE------eCCCCc-CcEeChhhccc
Confidence            110                                         012356778888      887765 55555555678


Q ss_pred             CCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCcc
Q 038576          238 AKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYA  317 (411)
Q Consensus       238 ~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~  317 (411)
                      +++|++|+++++......++......+|+.|++++|. ++.+ +...+..+++|+.|+++++. ++.+...         
T Consensus       199 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~---------  266 (477)
T 2id5_A          199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAV-PYLAVRHLVYLRFLNLSYNP-ISTIEGS---------  266 (477)
T ss_dssp             CTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSC-CHHHHTTCTTCCEEECCSSC-CCEECTT---------
T ss_pred             CcccceeeCCCCccccccCcccccCccccEEECcCCc-cccc-CHHHhcCccccCeeECCCCc-CCccChh---------
Confidence            8899999999887776655544446689999998874 5555 33456889999999999876 5555432         


Q ss_pred             CccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCC-CCCCCceEEEEecc
Q 038576          318 AQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGE-LSTPKLQKVQMSLV  387 (411)
Q Consensus       318 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~-~~~~~L~~l~l~~~  387 (411)
                        .+..+++|++|+++++ .+..++  +... ..+++|++|+++++ .+..+|... ..+++|++|++.+|
T Consensus       267 --~~~~l~~L~~L~L~~n-~l~~~~--~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N  330 (477)
T 2id5_A          267 --MLHELLRLQEIQLVGG-QLAVVE--PYAF-RGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSN  330 (477)
T ss_dssp             --SCTTCTTCCEEECCSS-CCSEEC--TTTB-TTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSS
T ss_pred             --hccccccCCEEECCCC-ccceEC--HHHh-cCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCC
Confidence              2345889999999986 566662  2222 45789999999986 677777643 47889999999544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.94  E-value=7.8e-25  Score=213.35  Aligned_cols=316  Identities=17%  Similarity=0.265  Sum_probs=162.4

Q ss_pred             hhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccE
Q 038576           10 LGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEE   88 (411)
Q Consensus        10 l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~   88 (411)
                      +..+.+|++|++++|.++. ++ ++++++|++|++++|.++.++. ++++++|++|++++ +.++.++.  ++++++|++
T Consensus        64 ~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~-n~l~~~~~--~~~l~~L~~  138 (466)
T 1o6v_A           64 VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN-NQITDIDP--LKNLTNLNR  138 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GTTCTTCSE
T ss_pred             hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCC-CCCCCChH--HcCCCCCCE
Confidence            4555666666666665555 32 5556666666666665555544 55666666666665 34555543  555666666


Q ss_pred             EEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCCcccee
Q 038576           89 LYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRIS  168 (411)
Q Consensus        89 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~  168 (411)
                      |++++|.+..              ...+.++++|+++++.. ....++ .+..+++|+.|++..+.....+.+....+++
T Consensus       139 L~l~~n~l~~--------------~~~~~~l~~L~~L~l~~-~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~  202 (466)
T 1o6v_A          139 LELSSNTISD--------------ISALSGLTSLQQLSFGN-QVTDLK-PLANLTTLERLDISSNKVSDISVLAKLTNLE  202 (466)
T ss_dssp             EEEEEEEECC--------------CGGGTTCTTCSEEEEEE-SCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred             EECCCCccCC--------------ChhhccCCcccEeecCC-cccCch-hhccCCCCCEEECcCCcCCCChhhccCCCCC
Confidence            6666555432              12244444555554432 222221 1444555555555444443333333344455


Q ss_pred             EEEecCCcccccccccccccccchhcccC---CCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEE
Q 038576          169 KLKLTNGANICLNEGHIMQLKRIEDLTSG---GDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLS  245 (411)
Q Consensus       169 ~L~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~  245 (411)
                      .|++..+.......  +..++.++.+...   +.....+..+++|++|      ++.++. +.....  ...+++|++|+
T Consensus       203 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L------~l~~n~-l~~~~~--~~~l~~L~~L~  271 (466)
T 1o6v_A          203 SLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDL------DLANNQ-ISNLAP--LSGLTKLTELK  271 (466)
T ss_dssp             EEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEE------ECCSSC-CCCCGG--GTTCTTCSEEE
T ss_pred             EEEecCCccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEE------ECCCCc-cccchh--hhcCCCCCEEE
Confidence            55544332211110  2222222222211   1111123445566666      666554 333222  34566677777


Q ss_pred             ecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccC
Q 038576          246 IFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFS  325 (411)
Q Consensus       246 l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~  325 (411)
                      ++++ .+...++.. .+++|+.|++++|. ++.+++   +..+++|+.|++++|. +..+..             ...++
T Consensus       272 l~~n-~l~~~~~~~-~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~-------------~~~l~  331 (466)
T 1o6v_A          272 LGAN-QISNISPLA-GLTALTNLELNENQ-LEDISP---ISNLKNLTYLTLYFNN-ISDISP-------------VSSLT  331 (466)
T ss_dssp             CCSS-CCCCCGGGT-TCTTCSEEECCSSC-CSCCGG---GGGCTTCSEEECCSSC-CSCCGG-------------GGGCT
T ss_pred             CCCC-ccCcccccc-CCCccCeEEcCCCc-ccCchh---hcCCCCCCEEECcCCc-CCCchh-------------hccCc
Confidence            7664 333333322 36777777776654 333322   4567777777777764 433322             22477


Q ss_pred             CCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCCCceEEEEe
Q 038576          326 ELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMS  385 (411)
Q Consensus       326 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~  385 (411)
                      +|+.|++++| .+++++ .   . ..+++|++|++.+|. +..++. +..+++|++|++.
T Consensus       332 ~L~~L~l~~n-~l~~~~-~---l-~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~  383 (466)
T 1o6v_A          332 KLQRLFFYNN-KVSDVS-S---L-ANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLN  383 (466)
T ss_dssp             TCCEEECCSS-CCCCCG-G---G-TTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECC
T ss_pred             cCCEeECCCC-ccCCch-h---h-ccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEecc
Confidence            8888888876 455552 1   1 346888888888764 444443 5567888888885

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.94  E-value=2e-25  Score=230.10  Aligned_cols=321  Identities=14%  Similarity=0.164  Sum_probs=237.1

Q ss_pred             CChhhh--ccccCcEEEecCCcCCC--CccccccccCcEEEeeCCc-ccc--chHHhcCCC-------CCCEEecCCCCC
Q 038576            6 LPSSLG--LLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSD-MEE--LAGEIGQLT-------QLRLLNLSKCFE   71 (411)
Q Consensus         6 lp~~l~--~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~-l~~--lp~~i~~l~-------~L~~L~L~~c~~   71 (411)
                      +|+.++  ++.+|++|++++|.+..  |..++++++|++|++++|+ ++.  +|..+++++       +|++|++++ +.
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~-N~  559 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY-NN  559 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS-SC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC-Cc
Confidence            898877  99999999999999665  8899999999999999998 884  888777665       999999999 57


Q ss_pred             ccccCc--ccccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCC-CcEE
Q 038576           72 LKVIPP--NVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKM-LQRY  148 (411)
Q Consensus        72 ~~~~~~--~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~-L~~L  148 (411)
                      +..+|.  . ++++++|++|++++|.+..             .+ .++++++|+.|++++|.+..+|..+..+++ |+.|
T Consensus       560 L~~ip~~~~-l~~L~~L~~L~Ls~N~l~~-------------lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L  624 (876)
T 4ecn_A          560 LEEFPASAS-LQKMVKLGLLDCVHNKVRH-------------LE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL  624 (876)
T ss_dssp             CCBCCCHHH-HTTCTTCCEEECTTSCCCB-------------CC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEE
T ss_pred             CCccCChhh-hhcCCCCCEEECCCCCccc-------------ch-hhcCCCcceEEECcCCccccchHHHhhccccCCEE
Confidence            779997  5 9999999999999998742             33 788999999999999998899999999999 9999


Q ss_pred             EEEecCCccccCcCC-c--cceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccc
Q 038576          149 RILIGDSREYDAWDG-I--SRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRR  225 (411)
Q Consensus       149 ~i~~~~~~~~~~~~~-~--~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~  225 (411)
                      ++..+....+|.+.. .  .+++.|+++.+.....    +   +.   +.....    ....++|+.|      ++.++.
T Consensus       625 ~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~----i---p~---l~~~l~----~~~~~~L~~L------~Ls~N~  684 (876)
T 4ecn_A          625 GFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSE----G---RN---ISCSMD----DYKGINASTV------TLSYNE  684 (876)
T ss_dssp             ECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTT----S---SS---CSSCTT----TCCCCCEEEE------ECCSSC
T ss_pred             ECcCCCCCcCchhhhccccCCCCEEECcCCcCCCc----c---cc---chhhhc----cccCCCcCEE------EccCCc
Confidence            999888877777655 2  3488888866432210    0   00   000000    0134578999      888876


Q ss_pred             cccccccccccCCCCCcEEEecCCcCCccCCCCCC--------CCCCcCeEeecCCCCCccccchHhhhccccccEEeEc
Q 038576          226 ELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSST--------SFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIK  297 (411)
Q Consensus       226 ~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~--------~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~  297 (411)
                       +..++......+++|+.|+++++ .+...+....        .+++|+.|++++|. ++.++.......+++|+.|+++
T Consensus       685 -L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls  761 (876)
T 4ecn_A          685 -IQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVS  761 (876)
T ss_dssp             -CCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECC
T ss_pred             -CCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCCC-CccchHHhhhccCCCcCEEEeC
Confidence             55555544457889999999985 3434333221        12389999998884 5565432111378999999999


Q ss_pred             ccccccccccccCCCCCCccCccccccCCCCeeecCCCc-----C-CceeccCCCcccccCCCcceEeecCCCCCccccC
Q 038576          298 VCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQ-----S-LTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSE  371 (411)
Q Consensus       298 ~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~-----~-l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~  371 (411)
                      +|. +..++..            ...+++|+.|++++++     + ...+|   ... ..+++|++|++++|. +..+|.
T Consensus       762 ~N~-L~~lp~~------------l~~L~~L~~L~Ls~N~~ls~N~l~~~ip---~~l-~~L~~L~~L~Ls~N~-L~~Ip~  823 (876)
T 4ecn_A          762 YNC-FSSFPTQ------------PLNSSQLKAFGIRHQRDAEGNRILRQWP---TGI-TTCPSLIQLQIGSND-IRKVDE  823 (876)
T ss_dssp             SSC-CSSCCCG------------GGGCTTCCEEECCCCBCTTCCBCCCCCC---TTG-GGCSSCCEEECCSSC-CCBCCS
T ss_pred             CCC-CCccchh------------hhcCCCCCEEECCCCCCcccccccccCh---HHH-hcCCCCCEEECCCCC-CCccCH
Confidence            876 5555443            3358999999998743     2 22231   122 457999999999974 588988


Q ss_pred             CCCCCCCceEEEEe
Q 038576          372 GELSTPKLQKVQMS  385 (411)
Q Consensus       372 ~~~~~~~L~~l~l~  385 (411)
                      .+  .++|+.|+++
T Consensus       824 ~l--~~~L~~LdLs  835 (876)
T 4ecn_A          824 KL--TPQLYILDIA  835 (876)
T ss_dssp             CC--CSSSCEEECC
T ss_pred             hh--cCCCCEEECC
Confidence            75  3799999997

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.94  E-value=8.6e-26  Score=228.13  Aligned_cols=319  Identities=12%  Similarity=0.139  Sum_probs=239.3

Q ss_pred             CChhhh--ccccCcEEEecCCcCCC--CccccccccCcEEEeeCCc-ccc--chHHhcCC------CCCCEEecCCCCCc
Q 038576            6 LPSSLG--LLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSD-MEE--LAGEIGQL------TQLRLLNLSKCFEL   72 (411)
Q Consensus         6 lp~~l~--~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~-l~~--lp~~i~~l------~~L~~L~L~~c~~~   72 (411)
                      +|+.++  ++.+|++|++++|.+..  |..++++++|++|++++|+ ++.  +|..++++      ++|++|++++ +.+
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~-n~l  317 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY-NNL  317 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS-SCC
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC-CcC
Confidence            899988  99999999999999766  8899999999999999998 884  89988887      9999999999 577


Q ss_pred             cccCc--ccccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCC-CcEEE
Q 038576           73 KVIPP--NVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKM-LQRYR  149 (411)
Q Consensus        73 ~~~~~--~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~-L~~L~  149 (411)
                      +.+|.  . ++++++|++|++++|.+.+            ..+ .+.++++|++|++++|....+|..+..+++ |++|+
T Consensus       318 ~~ip~~~~-l~~l~~L~~L~L~~N~l~g------------~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~  383 (636)
T 4eco_A          318 KTFPVETS-LQKMKKLGMLECLYNQLEG------------KLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLS  383 (636)
T ss_dssp             SSCCCHHH-HTTCTTCCEEECCSCCCEE------------ECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEE
T ss_pred             CccCchhh-hccCCCCCEEeCcCCcCcc------------chh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEE
Confidence            79997  5 9999999999999998864            344 788889999999999998899999999999 99999


Q ss_pred             EEecCCccccCcCC---ccceeEEEecCCccccccccccc-------ccccchhcccCCCcc-----ccccccchhhhch
Q 038576          150 ILIGDSREYDAWDG---ISRISKLKLTNGANICLNEGHIM-------QLKRIEDLTSGGDSE-----ALYTSFKNVENGM  214 (411)
Q Consensus       150 i~~~~~~~~~~~~~---~~~l~~L~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~-----~~~~~~~~L~~L~  214 (411)
                      ++.+....+|++..   ..+++.|++..+.........+.       .+..++.+.......     ..+..+++|++| 
T Consensus       384 Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L-  462 (636)
T 4eco_A          384 FAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI-  462 (636)
T ss_dssp             CCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEE-
T ss_pred             ccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEE-
Confidence            99888877777655   23788998877544332222222       333444443222211     123457899999 


Q ss_pred             HhhhccccccccccccccccccC-------CCCCcEEEecCCcCCccCCCCCC--CCCCcCeEeecCCCCCccccchHhh
Q 038576          215 EAMMRGINHRRELKQIFKQESSN-------AKDLEKLSIFMCDNLTHLVPSST--SFQNLTTLTVWGCHGMINVLTSSTA  285 (411)
Q Consensus       215 ~~~~~~l~~~~~l~~~~~~~~~~-------~~~L~~L~l~~c~~l~~~~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~  285 (411)
                           ++.++. +..++......       +++|+.|+++++. +...+....  .+++|+.|++++|... .++.  .+
T Consensus       463 -----~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~-~ip~--~~  532 (636)
T 4eco_A          463 -----NLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFS-KFPT--QP  532 (636)
T ss_dssp             -----ECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSSCCS-SCCC--GG
T ss_pred             -----ECCCCC-CCCcCHHHhccccccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEECCCCCCC-CcCh--hh
Confidence                 999876 45555433322       2399999999854 445554433  5899999999998644 4543  35


Q ss_pred             hccccccEEeEccccc------ccccccccCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEe
Q 038576          286 RSLVRLRQMTIKVCVM------ITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLV  359 (411)
Q Consensus       286 ~~l~~L~~L~l~~c~~------l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~  359 (411)
                      ..+++|+.|+++++..      ...++.            .+..+++|++|+++++. ++.+|..   .   +++|++|+
T Consensus       533 ~~l~~L~~L~Ls~N~~ls~N~l~~~~p~------------~l~~l~~L~~L~Ls~N~-l~~ip~~---~---~~~L~~L~  593 (636)
T 4eco_A          533 LNSSTLKGFGIRNQRDAQGNRTLREWPE------------GITLCPSLTQLQIGSND-IRKVNEK---I---TPNISVLD  593 (636)
T ss_dssp             GGCSSCCEEECCSCBCTTCCBCCCCCCT------------TGGGCSSCCEEECCSSC-CCBCCSC---C---CTTCCEEE
T ss_pred             hcCCCCCEEECCCCcccccCcccccChH------------HHhcCCCCCEEECCCCc-CCccCHh---H---hCcCCEEE
Confidence            6899999999976542      222222            44569999999999975 5777322   2   38999999


Q ss_pred             ecCCCCCcccc
Q 038576          360 VNRCPNMKIFS  370 (411)
Q Consensus       360 i~~C~~l~~~p  370 (411)
                      +++++ +..+.
T Consensus       594 Ls~N~-l~~~~  603 (636)
T 4eco_A          594 IKDNP-NISID  603 (636)
T ss_dssp             CCSCT-TCEEE
T ss_pred             CcCCC-Ccccc
Confidence            99975 44443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.94  E-value=2.9e-25  Score=220.97  Aligned_cols=140  Identities=21%  Similarity=0.216  Sum_probs=93.0

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccch-HHhcCCCCCCEEecCCCCCccccCcc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELA-GEIGQLTQLRLLNLSKCFELKVIPPN   78 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~~~~~~~~   78 (411)
                      .++.+|..+.  .+|++|++++|.++.  +..++++++|++|++++|.++.++ ..++++++|++|++++ +.+..++..
T Consensus        16 ~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~   92 (549)
T 2z81_A           16 SFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD-NHLSSLSSS   92 (549)
T ss_dssp             CCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-SCCCSCCHH
T ss_pred             ccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC-CccCccCHH
Confidence            3566776554  577888888877776  566777778888888887777554 4577777888888877 466666665


Q ss_pred             cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeecc-CCcCC-cccccCCCCcEEEEEecCC
Q 038576           79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQD-EKTLP-RDLSFFKMLQRYRILIGDS  155 (411)
Q Consensus        79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~-~~l~~~~~L~~L~i~~~~~  155 (411)
                      .++++++|++|++++|.+....           .+..++++++|++|++++|. ...+| ..+..+++|++|++..+..
T Consensus        93 ~~~~l~~L~~L~Ls~n~l~~~~-----------~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l  160 (549)
T 2z81_A           93 WFGPLSSLKYLNLMGNPYQTLG-----------VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL  160 (549)
T ss_dssp             HHTTCTTCCEEECTTCCCSSSC-----------SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             HhccCCCCcEEECCCCcccccc-----------hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence            5777778888888777765311           12455666666666666665 44444 3455666666666665543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.93  E-value=2.2e-25  Score=222.77  Aligned_cols=154  Identities=16%  Similarity=0.101  Sum_probs=96.6

Q ss_pred             ccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCCccCC-CCCCCCCCcCeEeecCCCCCccccchHh
Q 038576          206 SFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLV-PSSTSFQNLTTLTVWGCHGMINVLTSST  284 (411)
Q Consensus       206 ~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~  284 (411)
                      .+++|++|      ++.++. +..++.. ...+++|++|+++++......+ .....+++|+.|++++|...... + ..
T Consensus       371 ~~~~L~~L------~l~~n~-l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~-~~  440 (570)
T 2z63_A          371 GTTSLKYL------DLSFNG-VITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-N-GI  440 (570)
T ss_dssp             TCSCCCEE------ECCSCS-EEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC-T-TT
T ss_pred             ccCccCEE------ECCCCc-ccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc-h-hh
Confidence            34455555      555543 2233222 3566777777777644322212 12334788888888887543332 2 24


Q ss_pred             hhccccccEEeEccccccc-ccccccCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCC
Q 038576          285 ARSLVRLRQMTIKVCVMIT-EIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRC  363 (411)
Q Consensus       285 ~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C  363 (411)
                      +..+++|+.|++++|.-.. .++.            .+..+++|++|++++| .+++++  +... ..+++|++|++++|
T Consensus       441 ~~~l~~L~~L~l~~n~l~~~~~p~------------~~~~l~~L~~L~l~~n-~l~~~~--~~~~-~~l~~L~~L~l~~n  504 (570)
T 2z63_A          441 FNGLSSLEVLKMAGNSFQENFLPD------------IFTELRNLTFLDLSQC-QLEQLS--PTAF-NSLSSLQVLNMASN  504 (570)
T ss_dssp             TTTCTTCCEEECTTCEEGGGEECS------------CCTTCTTCCEEECTTS-CCCEEC--TTTT-TTCTTCCEEECCSS
T ss_pred             hhcCCcCcEEECcCCcCccccchh------------hhhcccCCCEEECCCC-ccccCC--hhhh-hcccCCCEEeCCCC
Confidence            5678888888888876321 2332            3345899999999998 466661  1121 34699999999997


Q ss_pred             CCCccccCC-CCCCCCceEEEEec
Q 038576          364 PNMKIFSEG-ELSTPKLQKVQMSL  386 (411)
Q Consensus       364 ~~l~~~p~~-~~~~~~L~~l~l~~  386 (411)
                       ++..+|.. +..+++|++|++.+
T Consensus       505 -~l~~~~~~~~~~l~~L~~L~l~~  527 (570)
T 2z63_A          505 -QLKSVPDGIFDRLTSLQKIWLHT  527 (570)
T ss_dssp             -CCSCCCTTTTTTCTTCCEEECCS
T ss_pred             -cCCCCCHHHhhcccCCcEEEecC
Confidence             57776653 56889999999964

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=8.8e-25  Score=204.72  Aligned_cols=302  Identities=19%  Similarity=0.230  Sum_probs=230.7

Q ss_pred             hhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEE
Q 038576           10 LGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEEL   89 (411)
Q Consensus        10 l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L   89 (411)
                      +.++.+|++|+++++.+...+.++.+++|++|++++|.++.++. +.++++|++|++++ +.++.++.  +..+++|++|
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~-n~i~~~~~--~~~l~~L~~L  115 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGT-NKITDISA--LQNLTNLREL  115 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GTTCTTCSEE
T ss_pred             chhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccC-CcccCchH--HcCCCcCCEE
Confidence            56789999999999999885568999999999999999998887 99999999999999 47888764  8999999999


Q ss_pred             EecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCCccceeE
Q 038576           90 YIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISK  169 (411)
Q Consensus        90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~  169 (411)
                      ++++|.+..              ...+..+++|+++++++|.....+..+..+++|++|++..+.....+.+....+++.
T Consensus       116 ~l~~n~i~~--------------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~  181 (347)
T 4fmz_A          116 YLNEDNISD--------------ISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYS  181 (347)
T ss_dssp             ECTTSCCCC--------------CGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred             ECcCCcccC--------------chhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCE
Confidence            999998753              123889999999999999755555668899999999998777666666555777888


Q ss_pred             EEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCC
Q 038576          170 LKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMC  249 (411)
Q Consensus       170 L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c  249 (411)
                      |++..+....        ..             .+..+++|+.|      .+.++. +..+..  ...+++|++|++++|
T Consensus       182 L~l~~n~l~~--------~~-------------~~~~l~~L~~L------~l~~n~-l~~~~~--~~~~~~L~~L~l~~n  231 (347)
T 4fmz_A          182 LSLNYNQIED--------IS-------------PLASLTSLHYF------TAYVNQ-ITDITP--VANMTRLNSLKIGNN  231 (347)
T ss_dssp             EECTTSCCCC--------CG-------------GGGGCTTCCEE------ECCSSC-CCCCGG--GGGCTTCCEEECCSS
T ss_pred             EEccCCcccc--------cc-------------cccCCCcccee------ecccCC-CCCCch--hhcCCcCCEEEccCC
Confidence            8776542111        10             12356788888      888765 444433  457899999999986


Q ss_pred             cCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCe
Q 038576          250 DNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKE  329 (411)
Q Consensus       250 ~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~  329 (411)
                      . +....+ ...+++|+.|++++|. ++.+   .....+++|++|++++|. ++++.             ....+++|+.
T Consensus       232 ~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~l~~n~-l~~~~-------------~~~~l~~L~~  291 (347)
T 4fmz_A          232 K-ITDLSP-LANLSQLTWLEIGTNQ-ISDI---NAVKDLTKLKMLNVGSNQ-ISDIS-------------VLNNLSQLNS  291 (347)
T ss_dssp             C-CCCCGG-GTTCTTCCEEECCSSC-CCCC---GGGTTCTTCCEEECCSSC-CCCCG-------------GGGGCTTCSE
T ss_pred             c-cCCCcc-hhcCCCCCEEECCCCc-cCCC---hhHhcCCCcCEEEccCCc-cCCCh-------------hhcCCCCCCE
Confidence            4 444444 3348999999999884 4544   246789999999999985 55552             2335899999


Q ss_pred             eecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCCCceEEEEe
Q 038576          330 LNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMS  385 (411)
Q Consensus       330 L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~  385 (411)
                      |++++|. +...+.  ... ..+++|++|++++|+ +..++. ...+++|++|+++
T Consensus       292 L~L~~n~-l~~~~~--~~l-~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~  341 (347)
T 4fmz_A          292 LFLNNNQ-LGNEDM--EVI-GGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFA  341 (347)
T ss_dssp             EECCSSC-CCGGGH--HHH-HTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSS
T ss_pred             EECcCCc-CCCcCh--hHh-hccccCCEEEccCCc-cccccC-hhhhhccceeehh
Confidence            9999985 544411  111 347999999999986 666655 6678999999997

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.93  E-value=1e-24  Score=215.56  Aligned_cols=135  Identities=20%  Similarity=0.245  Sum_probs=105.9

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCcc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPPN   78 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~~   78 (411)
                      .++.+|..+.  .+|++|++++|.++.  +..+.++++|++|++++|.++.+ |..++++++|++|++++ +.++.+|..
T Consensus        11 ~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~   87 (520)
T 2z7x_B           11 GLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH-NKLVKISCH   87 (520)
T ss_dssp             CCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS-SCCCEEECC
T ss_pred             Cccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC-CceeecCcc
Confidence            4677887766  789999999999887  36788899999999999998866 66788999999999999 578888864


Q ss_pred             cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCC--cEEEEEecCC
Q 038576           79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKML--QRYRILIGDS  155 (411)
Q Consensus        79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L--~~L~i~~~~~  155 (411)
                         .+++|++|++++|.+....           .+..++++++|++|++++|....  ..+..+++|  +.|++..+..
T Consensus        88 ---~l~~L~~L~L~~N~l~~~~-----------~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           88 ---PTVNLKHLDLSFNAFDALP-----------ICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             ---CCCCCSEEECCSSCCSSCC-----------CCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred             ---ccCCccEEeccCCcccccc-----------chhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccc
Confidence               8899999999999876411           23678888888888888887554  345566666  7777776544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.93  E-value=7.7e-25  Score=208.49  Aligned_cols=303  Identities=15%  Similarity=0.186  Sum_probs=216.1

Q ss_pred             ccccCcEEEecCCcCCC-Cc-cccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCccE
Q 038576           12 LLQNLQTLSLDDCELGD-MA-IIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEE   88 (411)
Q Consensus        12 ~l~~L~~L~l~~~~l~~-~~-~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~   88 (411)
                      .+.++++|+++++.++. |. .+..+++|++|++++|.++.++. .++++++|++|++++ +.++.++...++++++|++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF-NAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCC-CCCCcCCHHHhcCCCCCCE
Confidence            46788899998888887 54 36788889999999988887664 688889999999988 5677776666788899999


Q ss_pred             EEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc-ccccCCCCcEEEEEecCCccccCcCCccce
Q 038576           89 LYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRILIGDSREYDAWDGISRI  167 (411)
Q Consensus        89 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l  167 (411)
                      |++++|.+..  ++          ...+.++++|++|++++|....++. .+..+++|++|++..+.....+ .....++
T Consensus       122 L~L~~n~l~~--l~----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~L  188 (390)
T 3o6n_A          122 LVLERNDLSS--LP----------RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSL  188 (390)
T ss_dssp             EECCSSCCCC--CC----------TTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC-GGGCTTC
T ss_pred             EECCCCccCc--CC----------HHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc-ccccccc
Confidence            9998887753  22          2346788889999998888766654 4778888888888766544331 2224455


Q ss_pred             eEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEec
Q 038576          168 SKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIF  247 (411)
Q Consensus       168 ~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~  247 (411)
                      +.+++..+..                        ......++|++|      ++.++. +..++.   ..+++|+.|+++
T Consensus       189 ~~L~l~~n~l------------------------~~~~~~~~L~~L------~l~~n~-l~~~~~---~~~~~L~~L~l~  234 (390)
T 3o6n_A          189 FHANVSYNLL------------------------STLAIPIAVEEL------DASHNS-INVVRG---PVNVELTILKLQ  234 (390)
T ss_dssp             SEEECCSSCC------------------------SEEECCSSCSEE------ECCSSC-CCEEEC---CCCSSCCEEECC
T ss_pred             ceeecccccc------------------------cccCCCCcceEE------ECCCCe-eeeccc---cccccccEEECC
Confidence            5555433211                        111234578888      888765 444433   356899999999


Q ss_pred             CCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCC
Q 038576          248 MCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSEL  327 (411)
Q Consensus       248 ~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L  327 (411)
                      ++. +.+.... ..+++|+.|++++|. ++.+.+ ..+..+++|+.|+++++. ++.++...            ..+++|
T Consensus       235 ~n~-l~~~~~l-~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~------------~~l~~L  297 (390)
T 3o6n_A          235 HNN-LTDTAWL-LNYPGLVEVDLSYNE-LEKIMY-HPFVKMQRLERLYISNNR-LVALNLYG------------QPIPTL  297 (390)
T ss_dssp             SSC-CCCCGGG-GGCTTCSEEECCSSC-CCEEES-GGGTTCSSCCEEECCSSC-CCEEECSS------------SCCTTC
T ss_pred             CCC-CcccHHH-cCCCCccEEECCCCc-CCCcCh-hHccccccCCEEECCCCc-CcccCccc------------CCCCCC
Confidence            854 4444333 348999999999885 444433 346789999999999976 66665433            248999


Q ss_pred             CeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCCCceEEEEecc
Q 038576          328 KELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMSLV  387 (411)
Q Consensus       328 ~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~~~  387 (411)
                      ++|+++++ .++.+|...    ..+++|++|++.+| .+..++  ...+++|++|++.+|
T Consensus       298 ~~L~L~~n-~l~~~~~~~----~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N  349 (390)
T 3o6n_A          298 KVLDLSHN-HLLHVERNQ----PQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHN  349 (390)
T ss_dssp             CEEECCSS-CCCCCGGGH----HHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSS
T ss_pred             CEEECCCC-cceecCccc----cccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCC
Confidence            99999997 577763222    34699999999996 477776  456899999999643

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.93  E-value=1.6e-24  Score=210.62  Aligned_cols=345  Identities=15%  Similarity=0.162  Sum_probs=232.4

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccc-cc-hHHhcCCCCCCEEecCCCCCccccCc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDME-EL-AGEIGQLTQLRLLNLSKCFELKVIPP   77 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~-~l-p~~i~~l~~L~~L~L~~c~~~~~~~~   77 (411)
                      .++.+|. +.  .+|++|++++|.++.  +..++++++|++|++++|.+. .+ |..++++++|++|++++ +.+..++.
T Consensus        21 ~l~~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~-n~l~~~~~   96 (455)
T 3v47_A           21 GLHQVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY-NQFLQLET   96 (455)
T ss_dssp             CCSSCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT-CTTCEECT
T ss_pred             CcccCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC-CccCccCh
Confidence            4667776 32  789999999999988  788999999999999999886 55 45689999999999999 46776644


Q ss_pred             ccccCCCCccEEEecccccccCccccccccccccchhh--ccCCCCCCEEEEeeccCCcC-Ccc-cccCCCCcEEEEEec
Q 038576           78 NVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDE--LNNLSKLTSLEILIQDEKTL-PRD-LSFFKMLQRYRILIG  153 (411)
Q Consensus        78 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~-~~~-l~~~~~L~~L~i~~~  153 (411)
                      ..++++++|++|++++|.+..            ..+..  +.++++|++|++++|....+ |.. +..+++|++|++..+
T Consensus        97 ~~~~~l~~L~~L~L~~n~l~~------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  164 (455)
T 3v47_A           97 GAFNGLANLEVLTLTQCNLDG------------AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN  164 (455)
T ss_dssp             TTTTTCTTCCEEECTTSCCBT------------HHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred             hhccCcccCCEEeCCCCCCCc------------cccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence            449999999999999998864            22233  88999999999999997776 444 788999999999876


Q ss_pred             CCccccC-cC-C--ccceeEEEecCCcccccccccc--------cccccchhcccCCCccc-----cc---cccchhhhc
Q 038576          154 DSREYDA-WD-G--ISRISKLKLTNGANICLNEGHI--------MQLKRIEDLTSGGDSEA-----LY---TSFKNVENG  213 (411)
Q Consensus       154 ~~~~~~~-~~-~--~~~l~~L~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~-----~~---~~~~~L~~L  213 (411)
                      ....... .. .  ..+++.|++..+.........+        ..+..++.++.......     .+   ....+|+.|
T Consensus       165 ~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L  244 (455)
T 3v47_A          165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL  244 (455)
T ss_dssp             CBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEE
T ss_pred             cccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeE
Confidence            6443321 11 1  2567777765543332221111        11122222222111110     00   011445555


Q ss_pred             hHhhhcccccccccccc---------ccccc--cCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccch
Q 038576          214 MEAMMRGINHRRELKQI---------FKQES--SNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTS  282 (411)
Q Consensus       214 ~~~~~~~l~~~~~l~~~---------~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~  282 (411)
                            .+.++......         .....  ...++|+.|+++++......+.....+++|+.|++++|.. +.+++ 
T Consensus       245 ------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~-  316 (455)
T 3v47_A          245 ------ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-NKIDD-  316 (455)
T ss_dssp             ------ECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC-CEECT-
T ss_pred             ------eeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcc-cccCh-
Confidence                  55444221110         00000  1246899999998654444444445589999999988864 44433 


Q ss_pred             HhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecC
Q 038576          283 STARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNR  362 (411)
Q Consensus       283 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~  362 (411)
                      ..+..+++|++|++++|. ++.+...           .+..+++|++|+++++ .++.++  +... ..+++|++|++.+
T Consensus       317 ~~~~~l~~L~~L~Ls~N~-l~~~~~~-----------~~~~l~~L~~L~Ls~N-~l~~~~--~~~~-~~l~~L~~L~L~~  380 (455)
T 3v47_A          317 NAFWGLTHLLKLNLSQNF-LGSIDSR-----------MFENLDKLEVLDLSYN-HIRALG--DQSF-LGLPNLKELALDT  380 (455)
T ss_dssp             TTTTTCTTCCEEECCSSC-CCEECGG-----------GGTTCTTCCEEECCSS-CCCEEC--TTTT-TTCTTCCEEECCS
T ss_pred             hHhcCcccCCEEECCCCc-cCCcChh-----------HhcCcccCCEEECCCC-cccccC--hhhc-cccccccEEECCC
Confidence            245789999999999986 5555432           2335899999999997 566662  2222 3479999999999


Q ss_pred             CCCCccccCCC-CCCCCceEEEEecc
Q 038576          363 CPNMKIFSEGE-LSTPKLQKVQMSLV  387 (411)
Q Consensus       363 C~~l~~~p~~~-~~~~~L~~l~l~~~  387 (411)
                      + +++.+|... ..+++|++|++++|
T Consensus       381 N-~l~~~~~~~~~~l~~L~~L~l~~N  405 (455)
T 3v47_A          381 N-QLKSVPDGIFDRLTSLQKIWLHTN  405 (455)
T ss_dssp             S-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             C-ccccCCHhHhccCCcccEEEccCC
Confidence            5 688888754 57899999999643

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.93  E-value=1.4e-24  Score=216.03  Aligned_cols=352  Identities=18%  Similarity=0.193  Sum_probs=207.3

Q ss_pred             CCCC-ChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCCCCcccc--C
Q 038576            3 LLAL-PSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVI--P   76 (411)
Q Consensus         3 l~~l-p~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~--~   76 (411)
                      ++.+ |..|+++.+|++|++++|.++.  +..|+++++|++|++++|.++.+|.. ++++++|++|++++ +.++.+  |
T Consensus        38 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~  116 (549)
T 2z81_A           38 ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG-NPYQTLGVT  116 (549)
T ss_dssp             CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTT-CCCSSSCSS
T ss_pred             cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCC-Ccccccchh
Confidence            3444 5679999999999999999988  57899999999999999999977654 99999999999999 466643  4


Q ss_pred             cccccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCc-CCcccccCCCCcEEEEEecCC
Q 038576           77 PNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKT-LPRDLSFFKMLQRYRILIGDS  155 (411)
Q Consensus        77 ~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~l~~~~~L~~L~i~~~~~  155 (411)
                      .. ++++++|++|++++|.... .++          ...+.++++|++|++++|.... .|..++.+++|++|++..+..
T Consensus       117 ~~-~~~l~~L~~L~L~~n~~~~-~~~----------~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  184 (549)
T 2z81_A          117 SL-FPNLTNLQTLRIGNVETFS-EIR----------RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES  184 (549)
T ss_dssp             CS-CTTCTTCCEEEEEESSSCC-EEC----------TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred             hh-hhccCCccEEECCCCcccc-ccC----------HhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence            44 8899999999999987433 222          2467777788888888777443 445555555555555443332


Q ss_pred             ccccCcC--CccceeEEEecCCccccc------------------------------------------cccc-------
Q 038576          156 REYDAWD--GISRISKLKLTNGANICL------------------------------------------NEGH-------  184 (411)
Q Consensus       156 ~~~~~~~--~~~~l~~L~~~~~~~~~~------------------------------------------~~~~-------  184 (411)
                      ...+++.  ...+++.|++.++.-...                                          ....       
T Consensus       185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~  264 (549)
T 2z81_A          185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN  264 (549)
T ss_dssp             TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred             cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence            2222211  122233333222110000                                          0000       


Q ss_pred             ------------ccccccch-----------------------------hcc---cCCC--ccccccccchhhhchHhhh
Q 038576          185 ------------IMQLKRIE-----------------------------DLT---SGGD--SEALYTSFKNVENGMEAMM  218 (411)
Q Consensus       185 ------------~~~~~~l~-----------------------------~~~---~~~~--~~~~~~~~~~L~~L~~~~~  218 (411)
                                  +..+..+.                             .+.   ..+.  +....+.+++|++|     
T Consensus       265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L-----  339 (549)
T 2z81_A          265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL-----  339 (549)
T ss_dssp             CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEE-----
T ss_pred             ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEE-----
Confidence                        00000000                             000   0000  00011356777888     


Q ss_pred             ccccccccccccc--cccccCCCCCcEEEecCCcCCccCCC---CCCCCCCcCeEeecCCCCCccccchHhhhccccccE
Q 038576          219 RGINHRRELKQIF--KQESSNAKDLEKLSIFMCDNLTHLVP---SSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQ  293 (411)
Q Consensus       219 ~~l~~~~~l~~~~--~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~  293 (411)
                       ++.++.-...++  ......+++|+.|+++++. +...+.   ....+++|+.|++++| .++.++.  ....+++|++
T Consensus       340 -~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~--~~~~~~~L~~  414 (549)
T 2z81_A          340 -DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRN-TFHPMPD--SCQWPEKMRF  414 (549)
T ss_dssp             -ECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCS--CCCCCTTCCE
T ss_pred             -EccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCC-CCccCCh--hhcccccccE
Confidence             777766333222  1123567777777777743 322211   1223777777777776 3444432  2355677777


Q ss_pred             EeEcccccccccccccCCCCCCc-------cCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCC
Q 038576          294 MTIKVCVMITEIVADEDDEGDNY-------AAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNM  366 (411)
Q Consensus       294 L~l~~c~~l~~~~~~~~~~~~~~-------~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l  366 (411)
                      |++++|. ++.++..... .+..       .......+++|++|+++++ +++.+|. .    ..+++|++|+++++ .+
T Consensus       415 L~Ls~N~-l~~l~~~~~~-~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~-~----~~l~~L~~L~Ls~N-~l  485 (549)
T 2z81_A          415 LNLSSTG-IRVVKTCIPQ-TLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD-A----SLFPVLLVMKISRN-QL  485 (549)
T ss_dssp             EECTTSC-CSCCCTTSCT-TCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC-G----GGCTTCCEEECCSS-CC
T ss_pred             EECCCCC-cccccchhcC-CceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCC-c----ccCccCCEEecCCC-cc
Confidence            7777665 4433221100 0000       0001125788999999986 5777742 1    23689999999986 57


Q ss_pred             ccccCC-CCCCCCceEEEEec
Q 038576          367 KIFSEG-ELSTPKLQKVQMSL  386 (411)
Q Consensus       367 ~~~p~~-~~~~~~L~~l~l~~  386 (411)
                      ..++.. +..+++|+.|++++
T Consensus       486 ~~~~~~~~~~l~~L~~L~l~~  506 (549)
T 2z81_A          486 KSVPDGIFDRLTSLQKIWLHT  506 (549)
T ss_dssp             CCCCTTGGGGCTTCCEEECCS
T ss_pred             CCcCHHHHhcCcccCEEEecC
Confidence            766654 56789999999963

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.93  E-value=6.9e-24  Score=216.41  Aligned_cols=160  Identities=19%  Similarity=0.204  Sum_probs=118.9

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCcc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPPN   78 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~~   78 (411)
                      .++++|..+.  .++++|++++|.++.  +..|+++++|++|++++|.++.+ |..++++++|++|++++ +.+..+|..
T Consensus        15 ~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~   91 (680)
T 1ziw_A           15 KLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH-NELSQLSDK   91 (680)
T ss_dssp             CCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS-SCCCCCCTT
T ss_pred             CccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC-CccCccChh
Confidence            4677887665  688899999888887  45688888999999998888855 56688888999999988 578888876


Q ss_pred             cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcC-CcccccCCCCcEEEEEecCCcc
Q 038576           79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTL-PRDLSFFKMLQRYRILIGDSRE  157 (411)
Q Consensus        79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~i~~~~~~~  157 (411)
                      .++++++|++|++++|.+..            ..+..++++++|++|++++|..... +..++.+++|++|++..+....
T Consensus        92 ~~~~l~~L~~L~L~~n~l~~------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  159 (680)
T 1ziw_A           92 TFAFCTNLTELHLMSNSIQK------------IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA  159 (680)
T ss_dssp             TTTTCTTCSEEECCSSCCCC------------CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred             hhccCCCCCEEECCCCccCc------------cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc
Confidence            68888999999998887754            2235678888888888888875544 4456778888888887665443


Q ss_pred             ccCc----CCccceeEEEecCCc
Q 038576          158 YDAW----DGISRISKLKLTNGA  176 (411)
Q Consensus       158 ~~~~----~~~~~l~~L~~~~~~  176 (411)
                      .+..    ....+++.|++..+.
T Consensus       160 ~~~~~~~~~~~~~L~~L~L~~n~  182 (680)
T 1ziw_A          160 LKSEELDIFANSSLKKLELSSNQ  182 (680)
T ss_dssp             BCHHHHGGGTTCEESEEECTTCC
T ss_pred             cCHHHhhccccccccEEECCCCc
Confidence            3321    124677777776653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.93  E-value=2.6e-25  Score=229.32  Aligned_cols=327  Identities=14%  Similarity=0.173  Sum_probs=188.6

Q ss_pred             CccccccccCcEEEeeCCcccc------------------chHHhc--CCCCCCEEecCCCCCccccCcccccCCCCccE
Q 038576           29 MAIIGDLKKLVILALRGSDMEE------------------LAGEIG--QLTQLRLLNLSKCFELKVIPPNVISSLSRLEE   88 (411)
Q Consensus        29 ~~~l~~l~~L~~L~L~~~~l~~------------------lp~~i~--~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~   88 (411)
                      |..++++++|++|++++|.++.                  +|..++  ++++|++|++++|.....+|.. ++++++|++
T Consensus       441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~  519 (876)
T 4ecn_A          441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQS  519 (876)
T ss_dssp             CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCE
T ss_pred             hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCE
Confidence            4567788899999999988887                  888877  8999999999887777788866 888999999


Q ss_pred             EEecccc-cccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc--ccccCCCCcEEEEEecCCccccCcCCcc
Q 038576           89 LYIGQSP-IQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR--DLSFFKMLQRYRILIGDSREYDAWDGIS  165 (411)
Q Consensus        89 L~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~i~~~~~~~~~~~~~~~  165 (411)
                      |++++|. +....+|...+    .....+..+++|++|++++|.+..+|.  .++.+++|+.|+++.+....+|.+....
T Consensus       520 L~Ls~N~~lsg~~iP~~i~----~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~  595 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWT----RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNV  595 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHH----HHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTS
T ss_pred             EECcCCCCcccccchHHHH----hhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCC
Confidence            9998886 43101220000    000133455588888888888778888  7888888888888877777777555677


Q ss_pred             ceeEEEecCCccccccccccccccc-chhcccCCCccc----cccc--cchhhhchHhhhccccccccccccccc--cc-
Q 038576          166 RISKLKLTNGANICLNEGHIMQLKR-IEDLTSGGDSEA----LYTS--FKNVENGMEAMMRGINHRRELKQIFKQ--ES-  235 (411)
Q Consensus       166 ~l~~L~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~----~~~~--~~~L~~L~~~~~~~l~~~~~l~~~~~~--~~-  235 (411)
                      +++.|++..+....+.. .+..+.. ++.+....+...    .+..  .++|+.|      .+.++.-...++..  .. 
T Consensus       596 ~L~~L~Ls~N~l~~lp~-~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L------~Ls~N~l~g~ip~l~~~l~  668 (876)
T 4ecn_A          596 KLTDLKLDYNQIEEIPE-DFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSV------DFSYNKIGSEGRNISCSMD  668 (876)
T ss_dssp             EESEEECCSSCCSCCCT-TSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEE------ECCSSCTTTTSSSCSSCTT
T ss_pred             cceEEECcCCccccchH-HHhhccccCCEEECcCCCCCcCchhhhccccCCCCEE------ECcCCcCCCccccchhhhc
Confidence            88888876643322111 1233333 332221111110    0111  1235566      55555421111110  01 


Q ss_pred             -cCCCCCcEEEecCCcCCccCCCC-CCCCCCcCeEeecCCCCCccccchHh------hhccccccEEeEccccccccccc
Q 038576          236 -SNAKDLEKLSIFMCDNLTHLVPS-STSFQNLTTLTVWGCHGMINVLTSST------ARSLVRLRQMTIKVCVMITEIVA  307 (411)
Q Consensus       236 -~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~------~~~l~~L~~L~l~~c~~l~~~~~  307 (411)
                       ...++|+.|+++++. +...+.. ...+++|+.|++++|. ++.++....      .+++++|+.|++++|. ++.++.
T Consensus       669 ~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~  745 (876)
T 4ecn_A          669 DYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSD  745 (876)
T ss_dssp             TCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCG
T ss_pred             cccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCCC-CccchH
Confidence             123356666666543 2232221 1135666666666653 334432110      1123366666666654 444443


Q ss_pred             ccCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecC------CCCCccccCCCCCCCCceE
Q 038576          308 DEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNR------CPNMKIFSEGELSTPKLQK  381 (411)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~------C~~l~~~p~~~~~~~~L~~  381 (411)
                      ...          ...+++|+.|+++++ .++.+|...    ..+++|+.|++++      |.-...+|..+..+++|++
T Consensus       746 ~l~----------~~~l~~L~~L~Ls~N-~L~~lp~~l----~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~  810 (876)
T 4ecn_A          746 DFR----------ATTLPYLSNMDVSYN-CFSSFPTQP----LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ  810 (876)
T ss_dssp             GGS----------TTTCTTCCEEECCSS-CCSSCCCGG----GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCE
T ss_pred             Hhh----------hccCCCcCEEEeCCC-CCCccchhh----hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCE
Confidence            221          014677777777775 455553221    3457777777765      3334456666667777777


Q ss_pred             EEEe
Q 038576          382 VQMS  385 (411)
Q Consensus       382 l~l~  385 (411)
                      |+++
T Consensus       811 L~Ls  814 (876)
T 4ecn_A          811 LQIG  814 (876)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            7775

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.93  E-value=2.5e-25  Score=229.64  Aligned_cols=268  Identities=17%  Similarity=0.118  Sum_probs=131.9

Q ss_pred             ccccCcEEEecCCcCCC--Ccccccc-ccCcEEEeeCCccc-cchHHhcCCCCCCEEecCCCCCccccCcccccCCCCcc
Q 038576           12 LLQNLQTLSLDDCELGD--MAIIGDL-KKLVILALRGSDME-ELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLE   87 (411)
Q Consensus        12 ~l~~L~~L~l~~~~l~~--~~~l~~l-~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~   87 (411)
                      .+.+|++|++++|.++.  |..+... ++|++|++++|.++ .+|..++++++|++|++++|.....+|...++++++|+
T Consensus       267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~  346 (768)
T 3rgz_A          267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK  346 (768)
T ss_dssp             CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred             ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence            56667777777776653  5555543 67777777777666 55666777777777777774333366655466777777


Q ss_pred             EEEecccccccCccccccccccccchhhccCCC-CCCEEEEeeccC-CcCCccccc--CCCCcEEEEEecCCc-cccC-c
Q 038576           88 ELYIGQSPIQWGKVEGVDGERRNASLDELNNLS-KLTSLEILIQDE-KTLPRDLSF--FKMLQRYRILIGDSR-EYDA-W  161 (411)
Q Consensus        88 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~-~~~~~~l~~--~~~L~~L~i~~~~~~-~~~~-~  161 (411)
                      +|++++|.+.. .+|           ..+.+++ +|++|++++|.. ..+|..+..  +++|++|++..+... ..+. +
T Consensus       347 ~L~Ls~n~l~~-~~p-----------~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l  414 (768)
T 3rgz_A          347 VLDLSFNEFSG-ELP-----------ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL  414 (768)
T ss_dssp             EEECCSSEEEE-CCC-----------TTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG
T ss_pred             EEeCcCCccCc-ccc-----------HHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH
Confidence            77777766554 222           3344443 445555544442 122333322  344444444433222 1111 1


Q ss_pred             CCccceeEEEecCCcccccccccccccccchhcccCCCc-----cccccccchhhhchHhhhcccccccccccccccccc
Q 038576          162 DGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDS-----EALYTSFKNVENGMEAMMRGINHRRELKQIFKQESS  236 (411)
Q Consensus       162 ~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~  236 (411)
                      ....+++.|++..+.........+..++.++.+......     ...+..+++|++|      ++.++. +....+....
T Consensus       415 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L------~L~~N~-l~~~~p~~l~  487 (768)
T 3rgz_A          415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL------ILDFND-LTGEIPSGLS  487 (768)
T ss_dssp             GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE------ECCSSC-CCSCCCGGGG
T ss_pred             hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE------EecCCc-ccCcCCHHHh
Confidence            123444444443332211112222333333332211111     1123345566666      666654 2322222334


Q ss_pred             CCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccc
Q 038576          237 NAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCV  300 (411)
Q Consensus       237 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  300 (411)
                      .+++|+.|+++++......+.....+++|+.|++++|.....++.  .++.+++|+.|++++|.
T Consensus       488 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA--ELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG--GGGGCTTCCEEECCSSE
T ss_pred             cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH--HHcCCCCCCEEECCCCc
Confidence            566666666666443323333333366666666666644333322  34556666666666655

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.93  E-value=1.6e-23  Score=204.02  Aligned_cols=316  Identities=17%  Similarity=0.245  Sum_probs=239.2

Q ss_pred             hccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEE
Q 038576           11 GLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELY   90 (411)
Q Consensus        11 ~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~   90 (411)
                      ..+.+++.|+++++.++..+.+..+++|++|++++|.++.+|. ++++++|++|++++ +.+..++.  ++++++|++|+
T Consensus        43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~-n~l~~~~~--~~~l~~L~~L~  118 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNN-NQIADITP--LANLTNLTGLT  118 (466)
T ss_dssp             HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GTTCTTCCEEE
T ss_pred             hHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCC-CccccChh--hcCCCCCCEEE
Confidence            3578999999999999885568899999999999999998887 99999999999999 57777775  89999999999


Q ss_pred             ecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCCccceeEE
Q 038576           91 IGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKL  170 (411)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L  170 (411)
                      +++|.+..              ...+.++++|++|++++|....++ .+..+++|+.|.+. +.....+.+....+++.|
T Consensus       119 L~~n~l~~--------------~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~-~~~~~~~~~~~l~~L~~L  182 (466)
T 1o6v_A          119 LFNNQITD--------------IDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFG-NQVTDLKPLANLTTLERL  182 (466)
T ss_dssp             CCSSCCCC--------------CGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEE-ESCCCCGGGTTCTTCCEE
T ss_pred             CCCCCCCC--------------ChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecC-CcccCchhhccCCCCCEE
Confidence            99998753              123889999999999999977765 47899999999997 444444556668899999


Q ss_pred             EecCCcccccccccccccccchhcccCCC---ccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEec
Q 038576          171 KLTNGANICLNEGHIMQLKRIEDLTSGGD---SEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIF  247 (411)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~  247 (411)
                      ++..+.....  ..+..++.++.+.....   .......+++|++|      .+.++. ++.+.  ....+++|++|+++
T Consensus       183 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L------~l~~n~-l~~~~--~l~~l~~L~~L~l~  251 (466)
T 1o6v_A          183 DISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDEL------SLNGNQ-LKDIG--TLASLTNLTDLDLA  251 (466)
T ss_dssp             ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEE------ECCSSC-CCCCG--GGGGCTTCSEEECC
T ss_pred             ECcCCcCCCC--hhhccCCCCCEEEecCCcccccccccccCCCCEE------ECCCCC-cccch--hhhcCCCCCEEECC
Confidence            9877643322  23445555555543322   22235567888888      888865 44443  24578899999999


Q ss_pred             CCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCC
Q 038576          248 MCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSEL  327 (411)
Q Consensus       248 ~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L  327 (411)
                      ++. +.+..+.. .+++|+.|++++|. ++.+++   +..+++|+.|++++|. ++.++.             ...+++|
T Consensus       252 ~n~-l~~~~~~~-~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~-------------~~~l~~L  311 (466)
T 1o6v_A          252 NNQ-ISNLAPLS-GLTKLTELKLGANQ-ISNISP---LAGLTALTNLELNENQ-LEDISP-------------ISNLKNL  311 (466)
T ss_dssp             SSC-CCCCGGGT-TCTTCSEEECCSSC-CCCCGG---GTTCTTCSEEECCSSC-CSCCGG-------------GGGCTTC
T ss_pred             CCc-cccchhhh-cCCCCCEEECCCCc-cCcccc---ccCCCccCeEEcCCCc-ccCchh-------------hcCCCCC
Confidence            854 44444433 48999999998875 444433   5788999999999876 554432             2358999


Q ss_pred             CeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCCCceEEEEe
Q 038576          328 KELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMS  385 (411)
Q Consensus       328 ~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~  385 (411)
                      +.|+++++ .+.+++.    . ..+++|++|++.+| .+..++. +..+++|+.|+++
T Consensus       312 ~~L~L~~n-~l~~~~~----~-~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~  361 (466)
T 1o6v_A          312 TYLTLYFN-NISDISP----V-SSLTKLQRLFFYNN-KVSDVSS-LANLTNINWLSAG  361 (466)
T ss_dssp             SEEECCSS-CCSCCGG----G-GGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECC
T ss_pred             CEEECcCC-cCCCchh----h-ccCccCCEeECCCC-ccCCchh-hccCCCCCEEeCC
Confidence            99999998 4666522    1 35799999999997 6777754 6689999999997

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.93  E-value=6.4e-24  Score=212.12  Aligned_cols=354  Identities=15%  Similarity=0.112  Sum_probs=223.0

Q ss_pred             CCCCC-hhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccc--cC
Q 038576            3 LLALP-SSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKV--IP   76 (411)
Q Consensus         3 l~~lp-~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~--~~   76 (411)
                      ++.+| ..|+++.+|++|++++|.++.  +..|+++++|++|++++|.++.++. .++++++|++|++++ +.+..  +|
T Consensus        64 i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~lp  142 (570)
T 2z63_A           64 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLP  142 (570)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCS-SCCCCCCCC
T ss_pred             CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCC-CccceecCh
Confidence            44554 558889999999999999887  5778899999999999998887775 588999999999998 45654  56


Q ss_pred             cccccCCCCccEEEecccccccCcccccccc----------------c-cccchhhccCCCCCCEEEEeecc--------
Q 038576           77 PNVISSLSRLEELYIGQSPIQWGKVEGVDGE----------------R-RNASLDELNNLSKLTSLEILIQD--------  131 (411)
Q Consensus        77 ~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~----------------~-~~~~~~~l~~l~~L~~L~l~~~~--------  131 (411)
                      .. ++++++|++|++++|.+.. ..+.....                . ....+..+... +|++++++++.        
T Consensus       143 ~~-~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~  219 (570)
T 2z63_A          143 EY-FSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKT  219 (570)
T ss_dssp             GG-GGGCTTCCEEECTTSCCCE-ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHH
T ss_pred             hh-hcccCCCCEEeCcCCccce-ecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhh
Confidence            65 8889999999999887653 11110000                0 00001111111 23444333321        


Q ss_pred             ---------------------------------------------------CCcCCcccccCCCCcEEEEEecCCccccC
Q 038576          132 ---------------------------------------------------EKTLPRDLSFFKMLQRYRILIGDSREYDA  160 (411)
Q Consensus       132 ---------------------------------------------------~~~~~~~l~~~~~L~~L~i~~~~~~~~~~  160 (411)
                                                                         ....+..+..+++|+.|++..+....+++
T Consensus       220 ~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~  299 (570)
T 2z63_A          220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD  299 (570)
T ss_dssp             HHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCB
T ss_pred             hhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhh
Confidence                                                               12233445566777888777666666666


Q ss_pred             cCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccc--cccccCC
Q 038576          161 WDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIF--KQESSNA  238 (411)
Q Consensus       161 ~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~--~~~~~~~  238 (411)
                      +....+++.|++..+....+....+..+..+.-.............+++|++|      ++.++. +....  ......+
T Consensus       300 ~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L------~l~~n~-l~~~~~~~~~~~~~  372 (570)
T 2z63_A          300 FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL------DLSRNG-LSFKGCCSQSDFGT  372 (570)
T ss_dssp             CCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEE------ECCSSC-CBEEEEEEHHHHTC
T ss_pred             hhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEE------eCcCCc-cCcccccccccccc
Confidence            55422777777766544333332222222222111111111122478899999      998876 33332  2234578


Q ss_pred             CCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccC
Q 038576          239 KDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAA  318 (411)
Q Consensus       239 ~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~  318 (411)
                      ++|++|+++++... ..++....+++|+.|++++|.. +...+...+..+++|++|++++|. +......          
T Consensus       373 ~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~----------  439 (570)
T 2z63_A          373 TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTH-TRVAFNG----------  439 (570)
T ss_dssp             SCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEE-ESCTTSCTTTTCTTCCEEECTTSC-CEECCTT----------
T ss_pred             CccCEEECCCCccc-cccccccccCCCCEEEccCCcc-ccccchhhhhcCCCCCEEeCcCCc-ccccchh----------
Confidence            99999999986433 3332244489999999988754 333232346788999999999986 3333221          


Q ss_pred             ccccccCCCCeeecCCCcCC-ceeccCCCcccccCCCcceEeecCCCCCccc-cCCCCCCCCceEEEEec
Q 038576          319 QDEIVFSELKELNLSNLQSL-TSFSCSGNNCAFKFPSLERLVVNRCPNMKIF-SEGELSTPKLQKVQMSL  386 (411)
Q Consensus       319 ~~~~~~~~L~~L~l~~c~~l-~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~-p~~~~~~~~L~~l~l~~  386 (411)
                       .+..+++|++|++++|.-. ..+|..-    ..+++|++|++++|. +..+ |..+..+++|++|++++
T Consensus       440 -~~~~l~~L~~L~l~~n~l~~~~~p~~~----~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~  503 (570)
T 2z63_A          440 -IFNGLSSLEVLKMAGNSFQENFLPDIF----TELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMAS  503 (570)
T ss_dssp             -TTTTCTTCCEEECTTCEEGGGEECSCC----TTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred             -hhhcCCcCcEEECcCCcCccccchhhh----hcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCC
Confidence             2335899999999998633 2343221    346999999999975 5554 66677889999999973

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.93  E-value=7.9e-24  Score=215.98  Aligned_cols=139  Identities=18%  Similarity=0.215  Sum_probs=110.2

Q ss_pred             CCCCCh-hhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcc
Q 038576            3 LLALPS-SLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPN   78 (411)
Q Consensus         3 l~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~   78 (411)
                      ++.+|. .|+++.+|++|++++|.++.  +..++++++|++|++++|.++.+|. .++++++|++|++++ +.+..++..
T Consensus        37 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~  115 (680)
T 1ziw_A           37 LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS-NSIQKIKNN  115 (680)
T ss_dssp             CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCSC
T ss_pred             CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCC-CccCccChh
Confidence            556665 58999999999999999887  6778999999999999999998887 589999999999999 577888765


Q ss_pred             cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc-c--ccCCCCcEEEEEecC
Q 038576           79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-L--SFFKMLQRYRILIGD  154 (411)
Q Consensus        79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l--~~~~~L~~L~i~~~~  154 (411)
                      .++++++|++|++++|.+..            ..+..+.++++|++|++++|....++.. +  ..+++|++|++..+.
T Consensus       116 ~~~~l~~L~~L~Ls~n~l~~------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~  182 (680)
T 1ziw_A          116 PFVKQKNLITLDLSHNGLSS------------TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ  182 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCSC------------CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred             HccccCCCCEEECCCCcccc------------cCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence            58999999999999998765            3335667778888888887776555543 2  234667777766544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.93  E-value=9.5e-25  Score=225.34  Aligned_cols=336  Identities=15%  Similarity=0.131  Sum_probs=192.9

Q ss_pred             hccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccc-cchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccE
Q 038576           11 GLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDME-ELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEE   88 (411)
Q Consensus        11 ~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~   88 (411)
                      .++.+|++|++++|.++. ++.++++++|++|++++|.++ .+|..++++++|++|++++|.....+|.  . .+++|++
T Consensus       197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~-~l~~L~~  273 (768)
T 3rgz_A          197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--L-PLKSLQY  273 (768)
T ss_dssp             TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC--C-CCTTCCE
T ss_pred             ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc--c-ccCCCCE
Confidence            345555555555555554 333556666666666666555 4555566666666666666432223332  2 5566666


Q ss_pred             EEecccccccCccccccccccccchhhccCC-CCCCEEEEeeccCC-cCCcccccCCCCcEEEEEecCCc-cccC--cCC
Q 038576           89 LYIGQSPIQWGKVEGVDGERRNASLDELNNL-SKLTSLEILIQDEK-TLPRDLSFFKMLQRYRILIGDSR-EYDA--WDG  163 (411)
Q Consensus        89 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~i~~~~~~-~~~~--~~~  163 (411)
                      |++++|.+..            ..+..+... ++|++|++++|... .+|..++.+++|++|++..+... .++.  +..
T Consensus       274 L~L~~n~l~~------------~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~  341 (768)
T 3rgz_A          274 LSLAENKFTG------------EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK  341 (768)
T ss_dssp             EECCSSEEEE------------SCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTT
T ss_pred             EECcCCccCC------------ccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhc
Confidence            6666655543            223444443 66777777776643 55666667777777776655433 2332  333


Q ss_pred             ccceeEEEecCCcccccccccccccc-cchhcccCCCccc-----cc--cccchhhhchHhhhccccccccccccccccc
Q 038576          164 ISRISKLKLTNGANICLNEGHIMQLK-RIEDLTSGGDSEA-----LY--TSFKNVENGMEAMMRGINHRRELKQIFKQES  235 (411)
Q Consensus       164 ~~~l~~L~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~-----~~--~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~  235 (411)
                      ..+++.|++..+.........+..+. .++.++.......     ..  ..+++|++|      .+.++. +....+..+
T Consensus       342 l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L------~L~~n~-l~~~~p~~l  414 (768)
T 3rgz_A          342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL------YLQNNG-FTGKIPPTL  414 (768)
T ss_dssp             CTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE------ECCSSE-EEEECCGGG
T ss_pred             CCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE------ECCCCc-cccccCHHH
Confidence            56666666655432211111222222 3333322111110     01  125667777      777765 333333344


Q ss_pred             cCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCC
Q 038576          236 SNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDN  315 (411)
Q Consensus       236 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~  315 (411)
                      ..+++|+.|+++++......+.....+++|+.|++++|.....++.  .+..+++|++|++++|.-...++.        
T Consensus       415 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~--------  484 (768)
T 3rgz_A          415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ--ELMYVKTLETLILDFNDLTGEIPS--------  484 (768)
T ss_dssp             GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCCSCCCG--------
T ss_pred             hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCH--HHcCCCCceEEEecCCcccCcCCH--------
Confidence            6778888888887543333333344478888888888765544432  356788888888888763323333        


Q ss_pred             ccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCCCceEEEEec
Q 038576          316 YAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMSL  386 (411)
Q Consensus       316 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~~  386 (411)
                          .+..+++|+.|+++++.-...+|..-    ..+++|++|++++|.-...+|..+..+++|+.|+++.
T Consensus       485 ----~l~~l~~L~~L~L~~N~l~~~~p~~~----~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~  547 (768)
T 3rgz_A          485 ----GLSNCTNLNWISLSNNRLTGEIPKWI----GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT  547 (768)
T ss_dssp             ----GGGGCTTCCEEECCSSCCCSCCCGGG----GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred             ----HHhcCCCCCEEEccCCccCCcCChHH----hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence                23458899999999876433442221    3468999999999865557888777889999999963

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.92  E-value=8.2e-24  Score=209.07  Aligned_cols=111  Identities=15%  Similarity=0.219  Sum_probs=93.1

Q ss_pred             CCCCC-hhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccc--cCc
Q 038576            3 LLALP-SSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKV--IPP   77 (411)
Q Consensus         3 l~~lp-~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~--~~~   77 (411)
                      ++.+| ..|.++.+|++|++++|.++.  |..|+++++|++|++++|.++.+|..  .+++|++|++++ +.+..  +|.
T Consensus        33 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~-N~l~~~~~p~  109 (520)
T 2z7x_B           33 ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSF-NAFDALPICK  109 (520)
T ss_dssp             CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCS-SCCSSCCCCG
T ss_pred             ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccC-Cccccccchh
Confidence            45565 578999999999999999888  67899999999999999999988876  899999999999 46665  455


Q ss_pred             ccccCCCCccEEEecccccccCccccccccccccchhhccCCCCC--CEEEEeeccC
Q 038576           78 NVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKL--TSLEILIQDE  132 (411)
Q Consensus        78 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~  132 (411)
                      . ++++++|++|++++|.+..               ..+..+++|  +++++++|..
T Consensus       110 ~-~~~l~~L~~L~L~~n~l~~---------------~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B          110 E-FGNMSQLKFLGLSTTHLEK---------------SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             G-GGGCTTCCEEEEEESSCCG---------------GGGGGGTTSCEEEEEEEECTT
T ss_pred             h-hccCCcceEEEecCcccch---------------hhccccccceeeEEEeecccc
Confidence            5 8999999999999998754               456666777  9999999875

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.92  E-value=8.3e-24  Score=210.96  Aligned_cols=135  Identities=22%  Similarity=0.204  Sum_probs=108.2

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCcc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPPN   78 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~~   78 (411)
                      .++.+|..+.  .+|++|++++|.++.  +..|+++++|++|++++|.++.+ |..++++++|++|++++ +.++.+|..
T Consensus        42 ~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~  118 (562)
T 3a79_B           42 NLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH-NRLQNISCC  118 (562)
T ss_dssp             CCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT-SCCCEECSC
T ss_pred             CCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC-CcCCccCcc
Confidence            4677887664  789999999999888  46899999999999999999976 56789999999999999 678888874


Q ss_pred             cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCC--cEEEEEecCC
Q 038576           79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKML--QRYRILIGDS  155 (411)
Q Consensus        79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L--~~L~i~~~~~  155 (411)
                         .+++|++|++++|.+...           ..+..++++++|++|++++|....  ..+..+++|  +.|++..+..
T Consensus       119 ---~l~~L~~L~Ls~N~l~~l-----------~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          119 ---PMASLRHLDLSFNDFDVL-----------PVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             ---CCTTCSEEECCSSCCSBC-----------CCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSC
T ss_pred             ---ccccCCEEECCCCCcccc-----------CchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccc
Confidence               899999999999987641           123678889999999999887654  234555666  8888887654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=5.9e-24  Score=213.37  Aligned_cols=302  Identities=15%  Similarity=0.187  Sum_probs=199.7

Q ss_pred             ccccCcEEEecCCcCCC-C-ccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCccE
Q 038576           12 LLQNLQTLSLDDCELGD-M-AIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEE   88 (411)
Q Consensus        12 ~l~~L~~L~l~~~~l~~-~-~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~   88 (411)
                      .+.++++++++++.+.. | ..+.++++|++|++++|.++.++. .++.+++|++|++++ +.+..++...++.+++|++
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF-NAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCC-CcCCCCCHHHHcCCCCCCE
Confidence            35678888888888777 4 346778888888888888876654 677888888888888 4677777665778888888


Q ss_pred             EEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc-ccccCCCCcEEEEEecCCccccCcCCccce
Q 038576           89 LYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRILIGDSREYDAWDGISRI  167 (411)
Q Consensus        89 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l  167 (411)
                      |++++|.+..  +          ....+.++++|++|++++|.+..+++ .++.+++|++|+++.+.....+ .....++
T Consensus       128 L~L~~n~l~~--l----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L  194 (597)
T 3oja_B          128 LVLERNDLSS--L----------PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSL  194 (597)
T ss_dssp             EECCSSCCCC--C----------CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-GGGCTTC
T ss_pred             EEeeCCCCCC--C----------CHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-hhhhhhh
Confidence            8888887653  1          22345778888888888887666554 4677788888887655544321 2224444


Q ss_pred             eEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEec
Q 038576          168 SKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIF  247 (411)
Q Consensus       168 ~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~  247 (411)
                      ..|++..+..                        .......+|++|      .+.++. +..++.   ..+++|+.|+++
T Consensus       195 ~~L~l~~n~l------------------------~~l~~~~~L~~L------~ls~n~-l~~~~~---~~~~~L~~L~L~  240 (597)
T 3oja_B          195 FHANVSYNLL------------------------STLAIPIAVEEL------DASHNS-INVVRG---PVNVELTILKLQ  240 (597)
T ss_dssp             SEEECCSSCC------------------------SEEECCTTCSEE------ECCSSC-CCEEEC---SCCSCCCEEECC
T ss_pred             hhhhcccCcc------------------------ccccCCchhhee------eccCCc-cccccc---ccCCCCCEEECC
Confidence            4554432111                        111234567778      777765 444433   235788888888


Q ss_pred             CCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCC
Q 038576          248 MCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSEL  327 (411)
Q Consensus       248 ~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L  327 (411)
                      ++ .+.+.... ..+++|+.|++++|.. +.+.+ ..+..+++|+.|++++|. +..++....            .+|+|
T Consensus       241 ~n-~l~~~~~l-~~l~~L~~L~Ls~N~l-~~~~~-~~~~~l~~L~~L~Ls~N~-l~~l~~~~~------------~l~~L  303 (597)
T 3oja_B          241 HN-NLTDTAWL-LNYPGLVEVDLSYNEL-EKIMY-HPFVKMQRLERLYISNNR-LVALNLYGQ------------PIPTL  303 (597)
T ss_dssp             SS-CCCCCGGG-GGCTTCSEEECCSSCC-CEEES-GGGTTCSSCCEEECTTSC-CCEEECSSS------------CCTTC
T ss_pred             CC-CCCCChhh-ccCCCCCEEECCCCcc-CCCCH-HHhcCccCCCEEECCCCC-CCCCCcccc------------cCCCC
Confidence            85 34444333 3488899999988754 44323 245778889999998865 666544332            38889


Q ss_pred             CeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCCCceEEEEec
Q 038576          328 KELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMSL  386 (411)
Q Consensus       328 ~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~~  386 (411)
                      +.|+++++ .+..+|...    ..+++|+.|++++| .+..+|  ...+++|+.|++++
T Consensus       304 ~~L~Ls~N-~l~~i~~~~----~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~  354 (597)
T 3oja_B          304 KVLDLSHN-HLLHVERNQ----PQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSH  354 (597)
T ss_dssp             CEEECCSS-CCCCCGGGH----HHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCS
T ss_pred             cEEECCCC-CCCccCccc----ccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeC
Confidence            99999886 466663222    34688999999886 466665  34578888888854

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.92  E-value=2.5e-23  Score=194.81  Aligned_cols=289  Identities=15%  Similarity=0.207  Sum_probs=224.3

Q ss_pred             CCCCChhhhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccC
Q 038576            3 LLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISS   82 (411)
Q Consensus         3 l~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~   82 (411)
                      ++.+| .+..+.+|++|++++|.+++.+.+.++++|++|++++|.++.+| .++++++|++|++++ +.+..++.  +..
T Consensus        56 i~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~-n~i~~~~~--~~~  130 (347)
T 4fmz_A           56 VASIQ-GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNE-DNISDISP--LAN  130 (347)
T ss_dssp             CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTT-SCCCCCGG--GTT
T ss_pred             cccch-hhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcC-CcccCchh--hcc
Confidence            45666 48899999999999999998333999999999999999999886 589999999999999 57888876  889


Q ss_pred             CCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcC
Q 038576           83 LSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWD  162 (411)
Q Consensus        83 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~  162 (411)
                      +++|++|++++|....             ....+..+++|++|++++|....++. +..+++|++|++..+.....+.+.
T Consensus       131 l~~L~~L~l~~n~~~~-------------~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~  196 (347)
T 4fmz_A          131 LTKMYSLNLGANHNLS-------------DLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLA  196 (347)
T ss_dssp             CTTCCEEECTTCTTCC-------------CCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGG
T ss_pred             CCceeEEECCCCCCcc-------------cccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccccc
Confidence            9999999999996543             23558999999999999998777765 788999999999887776666655


Q ss_pred             CccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCc
Q 038576          163 GISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLE  242 (411)
Q Consensus       163 ~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~  242 (411)
                      ...+++.+.+..+....        .             ..+..+++|++|      .+.++. +..+..  ...+++|+
T Consensus       197 ~l~~L~~L~l~~n~l~~--------~-------------~~~~~~~~L~~L------~l~~n~-l~~~~~--~~~l~~L~  246 (347)
T 4fmz_A          197 SLTSLHYFTAYVNQITD--------I-------------TPVANMTRLNSL------KIGNNK-ITDLSP--LANLSQLT  246 (347)
T ss_dssp             GCTTCCEEECCSSCCCC--------C-------------GGGGGCTTCCEE------ECCSSC-CCCCGG--GTTCTTCC
T ss_pred             CCCccceeecccCCCCC--------C-------------chhhcCCcCCEE------EccCCc-cCCCcc--hhcCCCCC
Confidence            57777787775532111        0             013367899999      998876 455444  56899999


Q ss_pred             EEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCcccc
Q 038576          243 KLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEI  322 (411)
Q Consensus       243 ~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~  322 (411)
                      +|+++++ .+..... ...+++|+.|++++| .++++   ..+..+++|+.|++++|. +......           .+.
T Consensus       247 ~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~L~~n~-l~~~~~~-----------~l~  308 (347)
T 4fmz_A          247 WLEIGTN-QISDINA-VKDLTKLKMLNVGSN-QISDI---SVLNNLSQLNSLFLNNNQ-LGNEDME-----------VIG  308 (347)
T ss_dssp             EEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSC-CCGGGHH-----------HHH
T ss_pred             EEECCCC-ccCCChh-HhcCCCcCEEEccCC-ccCCC---hhhcCCCCCCEEECcCCc-CCCcChh-----------Hhh
Confidence            9999986 4444433 334999999999998 45554   246889999999999986 4444322           233


Q ss_pred             ccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCC
Q 038576          323 VFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCP  364 (411)
Q Consensus       323 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~  364 (411)
                      .+++|++|++++|+ +++++. .    ..+++|++|++.+|+
T Consensus       309 ~l~~L~~L~L~~n~-l~~~~~-~----~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          309 GLTNLTTLFLSQNH-ITDIRP-L----ASLSKMDSADFANQV  344 (347)
T ss_dssp             TCTTCSEEECCSSS-CCCCGG-G----GGCTTCSEESSSCC-
T ss_pred             ccccCCEEEccCCc-cccccC-h----hhhhccceeehhhhc
Confidence            58999999999986 666632 2    447999999999974

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.92  E-value=6.9e-23  Score=213.59  Aligned_cols=339  Identities=17%  Similarity=0.165  Sum_probs=202.1

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCc-cccc-hHHhcCCCCCCEEecCCCCCccccCc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSD-MEEL-AGEIGQLTQLRLLNLSKCFELKVIPP   77 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~-l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~   77 (411)
                      +++.+|.   -..+|++|++++|.++.  +..|.++++|++|++++|. +..+ |..++++++|++|++++ +.+..+++
T Consensus        15 ~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~-N~l~~~~p   90 (844)
T 3j0a_A           15 NLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS-SKIYFLHP   90 (844)
T ss_dssp             CSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT-CCCCEECT
T ss_pred             CCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC-CcCcccCH
Confidence            5788887   34789999999999887  7889999999999999994 4466 67799999999999999 56777744


Q ss_pred             ccccCCCCccEEEecccccccCccccccccccccchhh--ccCCCCCCEEEEeeccCCcCC--cccccCCCCcEEEEEec
Q 038576           78 NVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDE--LNNLSKLTSLEILIQDEKTLP--RDLSFFKMLQRYRILIG  153 (411)
Q Consensus        78 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~i~~~  153 (411)
                      ..++++++|++|++++|.+..            ..+..  +.++++|++|++++|....++  ..++.+++|++|+++.+
T Consensus        91 ~~~~~l~~L~~L~Ls~n~l~~------------~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A           91 DAFQGLFHLFELRLYFCGLSD------------AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             TSSCSCSSCCCEECTTCCCSS------------CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             hHccCCcccCEeeCcCCCCCc------------ccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence            459999999999999998764            22233  888999999999999866653  46888999999999876


Q ss_pred             CCcccc--CcCCc--cceeEEEecCCccccccccccccccc------chhcccCCC------------------------
Q 038576          154 DSREYD--AWDGI--SRISKLKLTNGANICLNEGHIMQLKR------IEDLTSGGD------------------------  199 (411)
Q Consensus       154 ~~~~~~--~~~~~--~~l~~L~~~~~~~~~~~~~~~~~~~~------l~~~~~~~~------------------------  199 (411)
                      ......  ++...  .+++.|.+..+.........+..+..      ++.+.....                        
T Consensus       159 ~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l  238 (844)
T 3j0a_A          159 QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL  238 (844)
T ss_dssp             CCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEEC
T ss_pred             cCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceec
Confidence            543321  11111  44555555433221111001111100      111100000                        


Q ss_pred             -----------------ccccccc--cchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCCccCCCCCC
Q 038576          200 -----------------SEALYTS--FKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSST  260 (411)
Q Consensus       200 -----------------~~~~~~~--~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  260 (411)
                                       ....+..  .++|++|      ++.++. +..+.......+++|+.|+++++......+....
T Consensus       239 ~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L------~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~  311 (844)
T 3j0a_A          239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL------DLSHGF-VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY  311 (844)
T ss_dssp             CSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEE------ECTTCC-CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT
T ss_pred             ccccccccccccccCCCChhhhhccccCCccEE------ECCCCc-ccccChhhhhcCCCCCEEECCCCcCCCCChHHhc
Confidence                             0000011  2456666      665544 3344343445666777777776433222222333


Q ss_pred             CCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCce
Q 038576          261 SFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTS  340 (411)
Q Consensus       261 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  340 (411)
                      .+++|+.|++++|.. +.+.+ ..+..+++|+.|+++++. +..+...           .+..+++|+.|+++++ .++.
T Consensus       312 ~l~~L~~L~Ls~N~l-~~~~~-~~~~~l~~L~~L~L~~N~-i~~~~~~-----------~~~~l~~L~~L~Ls~N-~l~~  376 (844)
T 3j0a_A          312 GLDNLQVLNLSYNLL-GELYS-SNFYGLPKVAYIDLQKNH-IAIIQDQ-----------TFKFLEKLQTLDLRDN-ALTT  376 (844)
T ss_dssp             TCSSCCEEEEESCCC-SCCCS-CSCSSCTTCCEEECCSCC-CCCCCSS-----------CSCSCCCCCEEEEETC-CSCC
T ss_pred             CCCCCCEEECCCCCC-CccCH-HHhcCCCCCCEEECCCCC-CCccChh-----------hhcCCCCCCEEECCCC-CCCc
Confidence            466777777766643 33322 234566777777777654 4444322           2234677777777764 3444


Q ss_pred             eccCCCcccccCCCcceEeecCCCCCccccCC----------------------CCCCCCceEEEEecc
Q 038576          341 FSCSGNNCAFKFPSLERLVVNRCPNMKIFSEG----------------------ELSTPKLQKVQMSLV  387 (411)
Q Consensus       341 ~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~----------------------~~~~~~L~~l~l~~~  387 (411)
                      ++        .+++|+.|.+.++ ++..+|..                      +..+++|+.|+++++
T Consensus       377 i~--------~~~~L~~L~l~~N-~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N  436 (844)
T 3j0a_A          377 IH--------FIPSIPDIFLSGN-KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN  436 (844)
T ss_dssp             CS--------SCCSCSEEEEESC-CCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESC
T ss_pred             cc--------CCCCcchhccCCC-CcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCC
Confidence            41        1355666665553 33444331                      125677888888633

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=1.9e-23  Score=202.38  Aligned_cols=310  Identities=16%  Similarity=0.150  Sum_probs=202.3

Q ss_pred             ChhhhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCc
Q 038576            7 PSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRL   86 (411)
Q Consensus         7 p~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L   86 (411)
                      +..++++.+|++|++++|.++..+.++.+++|++|++++|.++.+|  ++++++|++|++++ +.++.++   ++.+++|
T Consensus        35 ~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~-N~l~~~~---~~~l~~L  108 (457)
T 3bz5_A           35 TISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDS-NKLTNLD---VTPLTKL  108 (457)
T ss_dssp             EEEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCS-SCCSCCC---CTTCTTC
T ss_pred             ccChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcC-CCCceee---cCCCCcC
Confidence            3467889999999999999998447999999999999999999886  88999999999999 5688775   7899999


Q ss_pred             cEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCCccc
Q 038576           87 EELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISR  166 (411)
Q Consensus        87 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~  166 (411)
                      ++|++++|.+..               -.++++++|++|++++|....++  ++.+++|+.|++..+.....-.+....+
T Consensus       109 ~~L~L~~N~l~~---------------l~~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~  171 (457)
T 3bz5_A          109 TYLNCDTNKLTK---------------LDVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQ  171 (457)
T ss_dssp             CEEECCSSCCSC---------------CCCTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTT
T ss_pred             CEEECCCCcCCe---------------ecCCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccccccCCc
Confidence            999999998764               23788999999999999987764  7789999999987664332223444777


Q ss_pred             eeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEe
Q 038576          167 ISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSI  246 (411)
Q Consensus       167 l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l  246 (411)
                      ++.|++..+.-..+.                      +..+++|++|      .+.++. ++.+   ....+++|+.|++
T Consensus       172 L~~L~ls~n~l~~l~----------------------l~~l~~L~~L------~l~~N~-l~~~---~l~~l~~L~~L~L  219 (457)
T 3bz5_A          172 LTTLDCSFNKITELD----------------------VSQNKLLNRL------NCDTNN-ITKL---DLNQNIQLTFLDC  219 (457)
T ss_dssp             CCEEECCSSCCCCCC----------------------CTTCTTCCEE------ECCSSC-CSCC---CCTTCTTCSEEEC
T ss_pred             CCEEECCCCccceec----------------------cccCCCCCEE------ECcCCc-CCee---ccccCCCCCEEEC
Confidence            888877654221110                      2245667777      776654 3333   2356677777777


Q ss_pred             cCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCC
Q 038576          247 FMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSE  326 (411)
Q Consensus       247 ~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~  326 (411)
                      +++ .+.+. +.. .+++|+.|++++|. ++.++    .+.+++|+.|++.++. ++.+...... .....  ....+++
T Consensus       220 s~N-~l~~i-p~~-~l~~L~~L~l~~N~-l~~~~----~~~l~~L~~L~l~~n~-L~~L~l~~n~-~~~~~--~~~~l~~  287 (457)
T 3bz5_A          220 SSN-KLTEI-DVT-PLTQLTYFDCSVNP-LTELD----VSTLSKLTTLHCIQTD-LLEIDLTHNT-QLIYF--QAEGCRK  287 (457)
T ss_dssp             CSS-CCSCC-CCT-TCTTCSEEECCSSC-CSCCC----CTTCTTCCEEECTTCC-CSCCCCTTCT-TCCEE--ECTTCTT
T ss_pred             cCC-ccccc-Ccc-ccCCCCEEEeeCCc-CCCcC----HHHCCCCCEEeccCCC-CCEEECCCCc-cCCcc--ccccccc
Confidence            774 34443 333 37777777777664 34332    2345555555444322 3332211110 00000  1224677


Q ss_pred             CCeeecCCCcCCceeccCCCcc----cccCCCcceEeecCCCCCccccCCCCCCCCceEEEEec
Q 038576          327 LKELNLSNLQSLTSFSCSGNNC----AFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMSL  386 (411)
Q Consensus       327 L~~L~l~~c~~l~~~~~~~~~~----~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~~  386 (411)
                      |+.|++++|+.+..+|......    ...+++|++|++.++ +++.++  +..+++|+.|++++
T Consensus       288 L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~  348 (457)
T 3bz5_A          288 IKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVN  348 (457)
T ss_dssp             CCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCS
T ss_pred             CCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCC
Confidence            7777777777666664321100    023456666666553 455543  45677777777753

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.91  E-value=6e-24  Score=202.34  Aligned_cols=298  Identities=15%  Similarity=0.231  Sum_probs=222.9

Q ss_pred             ccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccccccCccccccccccccc
Q 038576           34 DLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNAS  112 (411)
Q Consensus        34 ~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  112 (411)
                      .+.++++|+++++.++.+|.. +.++++|++|++++ +.+..++...++.+++|++|++++|.+..            ..
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~  109 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNAIRY------------LP  109 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCCC------------CC
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCC-CcccccChhhccCCCCcCEEECCCCCCCc------------CC
Confidence            468999999999999999876 68899999999999 57888887669999999999999998865            33


Q ss_pred             hhhccCCCCCCEEEEeeccCCcCCccc-ccCCCCcEEEEEecCCccccC--cCCccceeEEEecCCcccccccccccccc
Q 038576          113 LDELNNLSKLTSLEILIQDEKTLPRDL-SFFKMLQRYRILIGDSREYDA--WDGISRISKLKLTNGANICLNEGHIMQLK  189 (411)
Q Consensus       113 ~~~l~~l~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~i~~~~~~~~~~--~~~~~~l~~L~~~~~~~~~~~~~~~~~~~  189 (411)
                      +..++++++|++|++++|....+|..+ ..+++|++|++..+.....+.  +....+++.|++..+.....         
T Consensus       110 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------  180 (390)
T 3o6n_A          110 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---------  180 (390)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---------
T ss_pred             HHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---------
Confidence            467899999999999999998998874 789999999999777655433  34477788887755321110         


Q ss_pred             cchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEe
Q 038576          190 RIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLT  269 (411)
Q Consensus       190 ~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~  269 (411)
                                   ....+++|++|      .+.++. +..+     ...++|++|+++++. +...+.. . +++|+.|+
T Consensus       181 -------------~~~~l~~L~~L------~l~~n~-l~~~-----~~~~~L~~L~l~~n~-l~~~~~~-~-~~~L~~L~  232 (390)
T 3o6n_A          181 -------------DLSLIPSLFHA------NVSYNL-LSTL-----AIPIAVEELDASHNS-INVVRGP-V-NVELTILK  232 (390)
T ss_dssp             -------------CGGGCTTCSEE------ECCSSC-CSEE-----ECCSSCSEEECCSSC-CCEEECC-C-CSSCCEEE
T ss_pred             -------------cccccccccee------eccccc-cccc-----CCCCcceEEECCCCe-eeecccc-c-cccccEEE
Confidence                         12356788888      887764 3332     245689999999854 3333322 2 78999999


Q ss_pred             ecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCccc
Q 038576          270 VWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCA  349 (411)
Q Consensus       270 l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~  349 (411)
                      +++|. +++.   ..+..+++|++|+++++. ++.+...           .+..+++|++|+++++ .++.++...    
T Consensus       233 l~~n~-l~~~---~~l~~l~~L~~L~Ls~n~-l~~~~~~-----------~~~~l~~L~~L~L~~n-~l~~~~~~~----  291 (390)
T 3o6n_A          233 LQHNN-LTDT---AWLLNYPGLVEVDLSYNE-LEKIMYH-----------PFVKMQRLERLYISNN-RLVALNLYG----  291 (390)
T ss_dssp             CCSSC-CCCC---GGGGGCTTCSEEECCSSC-CCEEESG-----------GGTTCSSCCEEECCSS-CCCEEECSS----
T ss_pred             CCCCC-Cccc---HHHcCCCCccEEECCCCc-CCCcChh-----------HccccccCCEEECCCC-cCcccCccc----
Confidence            99885 4443   356889999999999986 5555332           2335899999999996 688874333    


Q ss_pred             ccCCCcceEeecCCCCCccccCCCCCCCCceEEEEeccccchhcccCCchhhHHHH
Q 038576          350 FKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMSLVDEKLWAWDRDLNTTIQYV  405 (411)
Q Consensus       350 ~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~~~c~~l~~~~~~~~~~l~~l  405 (411)
                      ..+++|++|++++| .+..+|..+..+++|++|++.++.  +.......+++|+.+
T Consensus       292 ~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~--i~~~~~~~~~~L~~L  344 (390)
T 3o6n_A          292 QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS--IVTLKLSTHHTLKNL  344 (390)
T ss_dssp             SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC--CCCCCCCTTCCCSEE
T ss_pred             CCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc--cceeCchhhccCCEE
Confidence            23699999999997 688888877788999999997332  323334444444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.91  E-value=3.4e-23  Score=201.17  Aligned_cols=324  Identities=19%  Similarity=0.237  Sum_probs=221.4

Q ss_pred             CCCC-ChhhhccccCcEEEecCCcCCC---CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccc-c-
Q 038576            3 LLAL-PSSLGLLQNLQTLSLDDCELGD---MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKV-I-   75 (411)
Q Consensus         3 l~~l-p~~l~~l~~L~~L~l~~~~l~~---~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~-~-   75 (411)
                      ++.+ |..|+++.+|++|++++|.+..   +..|.++++|++|++++|.++.+ |..++++++|++|++++| .+.. . 
T Consensus        42 i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~  120 (455)
T 3v47_A           42 IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC-NLDGAVL  120 (455)
T ss_dssp             CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS-CCBTHHH
T ss_pred             cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCC-CCCcccc
Confidence            3444 6779999999999999999764   56799999999999999999865 778999999999999995 5554 2 


Q ss_pred             CcccccCCCCccEEEecccccccCccccccccccccchhh-ccCCCCCCEEEEeeccCCcC-CcccccC--CCCcEEEEE
Q 038576           76 PPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDE-LNNLSKLTSLEILIQDEKTL-PRDLSFF--KMLQRYRIL  151 (411)
Q Consensus        76 ~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~-~~~l~~~--~~L~~L~i~  151 (411)
                      +...++++++|++|++++|.+..            ..+.. +.++++|++|++++|....+ +..+..+  .+|+.|++.
T Consensus       121 ~~~~~~~l~~L~~L~L~~n~l~~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~  188 (455)
T 3v47_A          121 SGNFFKPLTSLEMLVLRDNNIKK------------IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS  188 (455)
T ss_dssp             HSSTTTTCTTCCEEECCSSBCCS------------CCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred             CcccccCcccCCEEECCCCccCc------------cCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence            23348899999999999998865            22344 88999999999999986555 3445444  567777766


Q ss_pred             ecCCccccCcC----------CccceeEEEecCCcccccccccccc---cccchhcccC-------------CCc--ccc
Q 038576          152 IGDSREYDAWD----------GISRISKLKLTNGANICLNEGHIMQ---LKRIEDLTSG-------------GDS--EAL  203 (411)
Q Consensus       152 ~~~~~~~~~~~----------~~~~l~~L~~~~~~~~~~~~~~~~~---~~~l~~~~~~-------------~~~--~~~  203 (411)
                      .+.....+...          ...+++.|+++++.........+..   ...++.+...             +..  ...
T Consensus       189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  268 (455)
T 3v47_A          189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT  268 (455)
T ss_dssp             TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred             cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence            55444333221          1356777777665322100000000   0111111100             000  000


Q ss_pred             cc--ccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccc
Q 038576          204 YT--SFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLT  281 (411)
Q Consensus       204 ~~--~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  281 (411)
                      +.  ..++|++|      ++.++. +.......+..+++|++|+++++......+.....+++|+.|++++|. ++.+.+
T Consensus       269 ~~~~~~~~L~~L------~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~  340 (455)
T 3v47_A          269 FKGLEASGVKTC------DLSKSK-IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDS  340 (455)
T ss_dssp             TGGGTTSCCCEE------ECCSSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECG
T ss_pred             cccccccCceEE------EecCcc-ccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCcCh
Confidence            11  23678999      998876 555555556789999999999865443333344458999999999985 455533


Q ss_pred             hHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeec
Q 038576          282 SSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVN  361 (411)
Q Consensus       282 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~  361 (411)
                       ..++.+++|++|++++|. ++.+...           .+..+++|++|+++++ .++++|...  . ..+++|++|+++
T Consensus       341 -~~~~~l~~L~~L~Ls~N~-l~~~~~~-----------~~~~l~~L~~L~L~~N-~l~~~~~~~--~-~~l~~L~~L~l~  403 (455)
T 3v47_A          341 -RMFENLDKLEVLDLSYNH-IRALGDQ-----------SFLGLPNLKELALDTN-QLKSVPDGI--F-DRLTSLQKIWLH  403 (455)
T ss_dssp             -GGGTTCTTCCEEECCSSC-CCEECTT-----------TTTTCTTCCEEECCSS-CCSCCCTTT--T-TTCTTCCEEECC
T ss_pred             -hHhcCcccCCEEECCCCc-ccccChh-----------hccccccccEEECCCC-ccccCCHhH--h-ccCCcccEEEcc
Confidence             346889999999999986 5555332           2345899999999996 677773222  1 346999999999


Q ss_pred             CCC
Q 038576          362 RCP  364 (411)
Q Consensus       362 ~C~  364 (411)
                      +++
T Consensus       404 ~N~  406 (455)
T 3v47_A          404 TNP  406 (455)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            865

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.91  E-value=9.1e-23  Score=206.16  Aligned_cols=109  Identities=17%  Similarity=0.133  Sum_probs=75.7

Q ss_pred             CCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCc
Q 038576          260 TSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLT  339 (411)
Q Consensus       260 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~  339 (411)
                      ..+++|+.|++++|.....+.+. .+..+++|+.|++++|. ++.++..           .+..+++|++|+++++ +++
T Consensus       466 ~~~~~L~~L~Ls~N~~~~~~~~~-~~~~l~~L~~L~Ls~N~-L~~l~~~-----------~f~~l~~L~~L~Ls~N-~l~  531 (635)
T 4g8a_A          466 NGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQ-LEQLSPT-----------AFNSLSSLQVLNMSHN-NFF  531 (635)
T ss_dssp             TTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSC-CCEECTT-----------TTTTCTTCCEEECTTS-CCC
T ss_pred             ccchhhhhhhhhhcccccccCch-hhhhccccCEEECCCCc-cCCcChH-----------HHcCCCCCCEEECCCC-cCC
Confidence            34677888888877655544332 35678889999998875 6666443           2345899999999996 677


Q ss_pred             eeccCCCcccccCCCcceEeecCCCCCccccC-CCCCC-CCceEEEEec
Q 038576          340 SFSCSGNNCAFKFPSLERLVVNRCPNMKIFSE-GELST-PKLQKVQMSL  386 (411)
Q Consensus       340 ~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~-~~~~~-~~L~~l~l~~  386 (411)
                      +++  .... ..+++|++|+++++ ++..++. .+..+ ++|+.|++++
T Consensus       532 ~l~--~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~  576 (635)
T 4g8a_A          532 SLD--TFPY-KCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ  576 (635)
T ss_dssp             BCC--CGGG-TTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTT
T ss_pred             CCC--hhHH-hCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeC
Confidence            773  2222 34689999999995 5666554 44445 6899999954

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.91  E-value=2.6e-23  Score=203.24  Aligned_cols=280  Identities=16%  Similarity=0.196  Sum_probs=198.5

Q ss_pred             CCCC-ChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCCCCccccCcc
Q 038576            3 LLAL-PSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVIPPN   78 (411)
Q Consensus         3 l~~l-p~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~~~~   78 (411)
                      ++.+ |..|.++.+|++|++++|.++.  +..|+++++|++|++++|.++.+|.. ++++++|++|++++ +.+..++..
T Consensus        44 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~  122 (477)
T 2id5_A           44 IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE-NKIVILLDY  122 (477)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTT-SCCCEECTT
T ss_pred             cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCC-CccccCChh
Confidence            4455 4679999999999999999888  78899999999999999999988865 78999999999999 577777655


Q ss_pred             cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc-ccccCCCCcEEEEEecCCcc
Q 038576           79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRILIGDSRE  157 (411)
Q Consensus        79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~~~~~~~  157 (411)
                      .+.++++|++|++++|.+..            ..+..+.++++|++|++++|....++. .+..+++|+.|++..+....
T Consensus       123 ~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~  190 (477)
T 2id5_A          123 MFQDLYNLKSLEVGDNDLVY------------ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA  190 (477)
T ss_dssp             TTTTCTTCCEEEECCTTCCE------------ECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred             HccccccCCEEECCCCccce------------eChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence            59999999999999998865            344678899999999999999888876 47889999999999776654


Q ss_pred             ccC--cCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccc
Q 038576          158 YDA--WDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQES  235 (411)
Q Consensus       158 ~~~--~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~  235 (411)
                      .+.  +....+++.|++.++....             .+....      ....+|++|      ++.++. ++.++...+
T Consensus       191 ~~~~~~~~l~~L~~L~l~~~~~~~-------------~~~~~~------~~~~~L~~L------~l~~n~-l~~~~~~~~  244 (477)
T 2id5_A          191 IRDYSFKRLYRLKVLEISHWPYLD-------------TMTPNC------LYGLNLTSL------SITHCN-LTAVPYLAV  244 (477)
T ss_dssp             ECTTCSCSCTTCCEEEEECCTTCC-------------EECTTT------TTTCCCSEE------EEESSC-CCSCCHHHH
T ss_pred             eChhhcccCcccceeeCCCCcccc-------------ccCccc------ccCccccEE------ECcCCc-ccccCHHHh
Confidence            443  2235666666665432221             111110      122367777      777764 555554444


Q ss_pred             cCCCCCcEEEecCCcCCccCC-CCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCC
Q 038576          236 SNAKDLEKLSIFMCDNLTHLV-PSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGD  314 (411)
Q Consensus       236 ~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  314 (411)
                      ..+++|+.|+++++. +.... .....+++|+.|++++|. ++.+.+ ..+..+++|+.|+++++. ++.++..      
T Consensus       245 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~------  314 (477)
T 2id5_A          245 RHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQ-LAVVEP-YAFRGLNYLRVLNVSGNQ-LTTLEES------  314 (477)
T ss_dssp             TTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSC-CSEECT-TTBTTCTTCCEEECCSSC-CSCCCGG------
T ss_pred             cCccccCeeECCCCc-CCccChhhccccccCCEEECCCCc-cceECH-HHhcCcccCCEEECCCCc-CceeCHh------
Confidence            567778888887754 33322 223347778888887764 344323 234667788888887764 5555432      


Q ss_pred             CccCccccccCCCCeeecCCCc
Q 038576          315 NYAAQDEIVFSELKELNLSNLQ  336 (411)
Q Consensus       315 ~~~~~~~~~~~~L~~L~l~~c~  336 (411)
                           .+..+++|++|++++.+
T Consensus       315 -----~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          315 -----VFHSVGNLETLILDSNP  331 (477)
T ss_dssp             -----GBSCGGGCCEEECCSSC
T ss_pred             -----HcCCCcccCEEEccCCC
Confidence                 12246778888877754

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.90  E-value=8.1e-23  Score=213.04  Aligned_cols=135  Identities=22%  Similarity=0.222  Sum_probs=100.9

Q ss_pred             ChhhhccccCcEEEecCCcC-CC--CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccc-cC-cccc
Q 038576            7 PSSLGLLQNLQTLSLDDCEL-GD--MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKV-IP-PNVI   80 (411)
Q Consensus         7 p~~l~~l~~L~~L~l~~~~l-~~--~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~-~~-~~~l   80 (411)
                      |..|.++.+|++|++++|.. ..  +..|+++++|++|++++|.+..+ |..++++++|++|++++| .+.. ++ ...+
T Consensus        41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~  119 (844)
T 3j0a_A           41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYF  119 (844)
T ss_dssp             SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCC
T ss_pred             hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC-CCCcccccCccc
Confidence            56789999999999999964 33  67799999999999999998865 778999999999999995 5544 33 2347


Q ss_pred             cCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcC-CcccccC--CCCcEEEEEec
Q 038576           81 SSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTL-PRDLSFF--KMLQRYRILIG  153 (411)
Q Consensus        81 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~--~~L~~L~i~~~  153 (411)
                      +++++|++|++++|.+.. .          .....++++++|++|++++|.+..+ +..+..+  ++|+.|.+..+
T Consensus       120 ~~L~~L~~L~Ls~N~l~~-~----------~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n  184 (844)
T 3j0a_A          120 RNLKALTRLDLSKNQIRS-L----------YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN  184 (844)
T ss_dssp             SSCSSCCEEEEESCCCCC-C----------CCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCS
T ss_pred             cccCCCCEEECCCCcccc-c----------ccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCC
Confidence            899999999999998764 1          1125688889999999988875433 3344444  55555555543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=1.7e-22  Score=187.55  Aligned_cols=137  Identities=23%  Similarity=0.284  Sum_probs=112.8

Q ss_pred             cccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEe
Q 038576           13 LQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYI   91 (411)
Q Consensus        13 l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l   91 (411)
                      ..+++.|++++|.++. |..++++++|++|++++|.++.+|..++++++|++|++++ +.+..+|.. ++++++|++|++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~-n~l~~lp~~-l~~l~~L~~L~L  157 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLAR-NPLRALPAS-IASLNRLRELSI  157 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEES-CCCCCCCGG-GGGCTTCCEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCC-CccccCcHH-HhcCcCCCEEEC
Confidence            3789999999999999 8889999999999999999999999999999999999999 577788877 999999999999


Q ss_pred             cccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecC
Q 038576           92 GQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGD  154 (411)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~  154 (411)
                      ++|.... .+|.....  ......+.++++|++|++++|.+..+|..++.+++|++|++..+.
T Consensus       158 ~~n~~~~-~~p~~~~~--~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~  217 (328)
T 4fcg_A          158 RACPELT-ELPEPLAS--TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP  217 (328)
T ss_dssp             EEETTCC-CCCSCSEE--EC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC
T ss_pred             CCCCCcc-ccChhHhh--ccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC
Confidence            9987765 44421111  111233556899999999999988899888889999999887444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=5.5e-23  Score=206.32  Aligned_cols=281  Identities=16%  Similarity=0.242  Sum_probs=216.4

Q ss_pred             ccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccccccCccccccccccccc
Q 038576           34 DLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNAS  112 (411)
Q Consensus        34 ~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  112 (411)
                      .+.+++.++++++.+..+|.. ++++++|++|++++ +.+..++...++.+++|++|++++|.+..            ..
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~  115 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNAIRY------------LP  115 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCCC------------CC
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCC-CCCCCCChHHhcCCCCCCEEECCCCcCCC------------CC
Confidence            468999999999999988876 67899999999999 57888876559999999999999999875            33


Q ss_pred             hhhccCCCCCCEEEEeeccCCcCCcc-cccCCCCcEEEEEecCCccccC--cCCccceeEEEecCCcccccccccccccc
Q 038576          113 LDELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRILIGDSREYDA--WDGISRISKLKLTNGANICLNEGHIMQLK  189 (411)
Q Consensus       113 ~~~l~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~i~~~~~~~~~~--~~~~~~l~~L~~~~~~~~~~~~~~~~~~~  189 (411)
                      +..++++++|++|++++|.+..+|.. ++.+++|++|+++.+.....+.  +....+++.|++..+.....         
T Consensus       116 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------  186 (597)
T 3oja_B          116 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---------  186 (597)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---------
T ss_pred             HHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---------
Confidence            46789999999999999998888887 4889999999999877655442  44477888888765322110         


Q ss_pred             cchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEe
Q 038576          190 RIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLT  269 (411)
Q Consensus       190 ~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~  269 (411)
                                   ....+++|++|      .+.++. +..+     ...++|+.|+++++. +...++..  +++|+.|+
T Consensus       187 -------------~~~~l~~L~~L------~l~~n~-l~~l-----~~~~~L~~L~ls~n~-l~~~~~~~--~~~L~~L~  238 (597)
T 3oja_B          187 -------------DLSLIPSLFHA------NVSYNL-LSTL-----AIPIAVEELDASHNS-INVVRGPV--NVELTILK  238 (597)
T ss_dssp             -------------CGGGCTTCSEE------ECCSSC-CSEE-----ECCTTCSEEECCSSC-CCEEECSC--CSCCCEEE
T ss_pred             -------------Chhhhhhhhhh------hcccCc-cccc-----cCCchhheeeccCCc-cccccccc--CCCCCEEE
Confidence                         12356788888      887764 3332     345789999999854 43333322  57999999


Q ss_pred             ecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCccc
Q 038576          270 VWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCA  349 (411)
Q Consensus       270 l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~  349 (411)
                      +++|. ++..   ..+..+++|+.|++++|. +..+...           .+..+++|+.|+++++ .+..+|....   
T Consensus       239 L~~n~-l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~~~-----------~~~~l~~L~~L~Ls~N-~l~~l~~~~~---  298 (597)
T 3oja_B          239 LQHNN-LTDT---AWLLNYPGLVEVDLSYNE-LEKIMYH-----------PFVKMQRLERLYISNN-RLVALNLYGQ---  298 (597)
T ss_dssp             CCSSC-CCCC---GGGGGCTTCSEEECCSSC-CCEEESG-----------GGTTCSSCCEEECTTS-CCCEEECSSS---
T ss_pred             CCCCC-CCCC---hhhccCCCCCEEECCCCc-cCCCCHH-----------HhcCccCCCEEECCCC-CCCCCCcccc---
Confidence            99885 4443   356889999999999986 5554332           2335899999999996 6888854432   


Q ss_pred             ccCCCcceEeecCCCCCccccCCCCCCCCceEEEEec
Q 038576          350 FKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMSL  386 (411)
Q Consensus       350 ~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~~  386 (411)
                       .+|+|+.|++++| .+..+|..+..+++|+.|++++
T Consensus       299 -~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~  333 (597)
T 3oja_B          299 -PIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDH  333 (597)
T ss_dssp             -CCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCS
T ss_pred             -cCCCCcEEECCCC-CCCccCcccccCCCCCEEECCC
Confidence             3699999999997 5778988777899999999973

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.89  E-value=1.2e-21  Score=195.39  Aligned_cols=145  Identities=18%  Similarity=0.190  Sum_probs=114.6

Q ss_pred             ccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccch-HHhcCCCCCCEEecCCCCCccccCcccccCCCCccEE
Q 038576           12 LLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELA-GEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEEL   89 (411)
Q Consensus        12 ~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L   89 (411)
                      .|...++++++++.++. |..+.  ++|++|++++|.++.++ ..++++++|++|++++ +.++.++.+.++++++|++|
T Consensus        29 ~~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L  105 (562)
T 3a79_B           29 SNELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSH-NRIRSLDFHVFLFNQDLEYL  105 (562)
T ss_dssp             ----CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCS-CCCCEECTTTTTTCTTCCEE
T ss_pred             ccCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCC-CCCCcCCHHHhCCCCCCCEE
Confidence            34556899999999999 76664  89999999999999776 5799999999999999 57888866669999999999


Q ss_pred             EecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCC--cccccCCCCcEEEEEecCCccccCcCCccce
Q 038576           90 YIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLP--RDLSFFKMLQRYRILIGDSREYDAWDGISRI  167 (411)
Q Consensus        90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l  167 (411)
                      ++++|.+..  +|           ..  .+++|++|++++|....++  ..++.+++|++|+++.+.... .++....++
T Consensus       106 ~Ls~N~l~~--lp-----------~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L  169 (562)
T 3a79_B          106 DVSHNRLQN--IS-----------CC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LDLLPVAHL  169 (562)
T ss_dssp             ECTTSCCCE--EC-----------SC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TTTGGGTTS
T ss_pred             ECCCCcCCc--cC-----------cc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-Cchhhhhhc
Confidence            999998863  33           23  7999999999999977654  689999999999999766543 223333444


Q ss_pred             --eEEEecCC
Q 038576          168 --SKLKLTNG  175 (411)
Q Consensus       168 --~~L~~~~~  175 (411)
                        +.|++..+
T Consensus       170 ~L~~L~L~~n  179 (562)
T 3a79_B          170 HLSCILLDLV  179 (562)
T ss_dssp             CEEEEEEEES
T ss_pred             eeeEEEeecc
Confidence              77777654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.89  E-value=1.6e-21  Score=181.23  Aligned_cols=288  Identities=14%  Similarity=0.163  Sum_probs=193.6

Q ss_pred             ccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEe
Q 038576           14 QNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYI   91 (411)
Q Consensus        14 ~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l   91 (411)
                      .++++++++++.++. |..+.  ++|++|++++|.++.++. .++++++|++|++++ +.+..++...++.+++|++|++
T Consensus        31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN-NKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCC-CcCCeeCHHHhcCCCCCCEEEC
Confidence            378999999988888 66554  689999999999987765 688999999999998 5677774444889999999999


Q ss_pred             cccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc-ccccCCCCcEEEEEecCCccccCcCCccceeEE
Q 038576           92 GQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRILIGDSREYDAWDGISRISKL  170 (411)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L  170 (411)
                      ++|.+..  ++           ..+.  ++|++|++++|....++. .+..+++|+.|++..+.......          
T Consensus       108 s~n~l~~--l~-----------~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------  162 (330)
T 1xku_A          108 SKNQLKE--LP-----------EKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI----------  162 (330)
T ss_dssp             CSSCCSB--CC-----------SSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB----------
T ss_pred             CCCcCCc--cC-----------hhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCc----------
Confidence            9988753  22           2222  689999999998777765 36788999999886443321000          


Q ss_pred             EecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCc
Q 038576          171 KLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCD  250 (411)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~  250 (411)
                                                   ....+..+++|++|      .+.++. ++.++.   ..+++|++|+++++.
T Consensus       163 -----------------------------~~~~~~~l~~L~~L------~l~~n~-l~~l~~---~~~~~L~~L~l~~n~  203 (330)
T 1xku_A          163 -----------------------------ENGAFQGMKKLSYI------RIADTN-ITTIPQ---GLPPSLTELHLDGNK  203 (330)
T ss_dssp             -----------------------------CTTGGGGCTTCCEE------ECCSSC-CCSCCS---SCCTTCSEEECTTSC
T ss_pred             -----------------------------ChhhccCCCCcCEE------ECCCCc-cccCCc---cccccCCEEECCCCc
Confidence                                         00112356777777      777765 444433   234788888888754


Q ss_pred             CCccC-CCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCe
Q 038576          251 NLTHL-VPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKE  329 (411)
Q Consensus       251 ~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~  329 (411)
                       +... +.....+++|+.|++++|. ++.+++ ..+..+++|+.|++++|. +..++..            ...+++|++
T Consensus       204 -l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~lp~~------------l~~l~~L~~  267 (330)
T 1xku_A          204 -ITKVDAASLKGLNNLAKLGLSFNS-ISAVDN-GSLANTPHLRELHLNNNK-LVKVPGG------------LADHKYIQV  267 (330)
T ss_dssp             -CCEECTGGGTTCTTCCEEECCSSC-CCEECT-TTGGGSTTCCEEECCSSC-CSSCCTT------------TTTCSSCCE
T ss_pred             -CCccCHHHhcCCCCCCEEECCCCc-CceeCh-hhccCCCCCCEEECCCCc-CccCChh------------hccCCCcCE
Confidence             3333 2233447888899888775 444433 245778889999998875 5555443            234788999


Q ss_pred             eecCCCcCCceeccCCCc---ccccCCCcceEeecCCCCCc--cccCCCCCCCCceEEEEe
Q 038576          330 LNLSNLQSLTSFSCSGNN---CAFKFPSLERLVVNRCPNMK--IFSEGELSTPKLQKVQMS  385 (411)
Q Consensus       330 L~l~~c~~l~~~~~~~~~---~~~~~~~L~~L~i~~C~~l~--~~p~~~~~~~~L~~l~l~  385 (411)
                      |+++++ .++.++.....   .....++|+.|++.+.+-..  ..|..+..+++++.++++
T Consensus       268 L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~  327 (330)
T 1xku_A          268 VYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG  327 (330)
T ss_dssp             EECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC-
T ss_pred             EECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEec
Confidence            999886 46666321110   00124788889998865321  233445578888888886

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.89  E-value=7.9e-22  Score=183.47  Aligned_cols=298  Identities=16%  Similarity=0.178  Sum_probs=197.8

Q ss_pred             CCCCChhhhcc------ccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccch-HHhcCCCCCCEEecCCCCCccc
Q 038576            3 LLALPSSLGLL------QNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELA-GEIGQLTQLRLLNLSKCFELKV   74 (411)
Q Consensus         3 l~~lp~~l~~l------~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~~~~   74 (411)
                      ++.+|..+...      .++++++++++.++. |..+.  ++|++|++++|.++.++ ..++++++|++|++++ +.++.
T Consensus        16 l~~lp~~~~~~cp~~c~c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~   92 (332)
T 2ft3_A           16 LDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVN-NKISK   92 (332)
T ss_dssp             ---------CCCCSSCEEETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCE
T ss_pred             cccCCCcccCCCCCCCcccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCC-CccCc
Confidence            45677654433      379999999999988 76663  69999999999999775 4799999999999999 57888


Q ss_pred             cCcccccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc-cccCCCCcEEEEEec
Q 038576           75 IPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRILIG  153 (411)
Q Consensus        75 ~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~i~~~  153 (411)
                      ++...++++++|++|++++|.+..  ++           ..+.  ++|++|++++|....++.. +..+++|++|++..+
T Consensus        93 ~~~~~~~~l~~L~~L~L~~n~l~~--l~-----------~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n  157 (332)
T 2ft3_A           93 IHEKAFSPLRKLQKLYISKNHLVE--IP-----------PNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN  157 (332)
T ss_dssp             ECGGGSTTCTTCCEEECCSSCCCS--CC-----------SSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSC
T ss_pred             cCHhHhhCcCCCCEEECCCCcCCc--cC-----------cccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCC
Confidence            855559999999999999998763  33           3333  7899999999998888764 788999999998754


Q ss_pred             CCccccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccc
Q 038576          154 DSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQ  233 (411)
Q Consensus       154 ~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~  233 (411)
                      .....+..                                       ...+..+ +|++|      ++.++. ++.++. 
T Consensus       158 ~l~~~~~~---------------------------------------~~~~~~l-~L~~L------~l~~n~-l~~l~~-  189 (332)
T 2ft3_A          158 PLENSGFE---------------------------------------PGAFDGL-KLNYL------RISEAK-LTGIPK-  189 (332)
T ss_dssp             CCBGGGSC---------------------------------------TTSSCSC-CCSCC------BCCSSB-CSSCCS-
T ss_pred             ccccCCCC---------------------------------------cccccCC-ccCEE------ECcCCC-CCccCc-
Confidence            43210000                                       0001123 67777      777665 444433 


Q ss_pred             cccCCCCCcEEEecCCcCCccCC-CCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCC
Q 038576          234 ESSNAKDLEKLSIFMCDNLTHLV-PSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDE  312 (411)
Q Consensus       234 ~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  312 (411)
                        ..+++|++|+++++. +.... .....+++|+.|++++|. ++.+++ ..+..+++|+.|++++|. ++.++..    
T Consensus       190 --~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~lp~~----  259 (332)
T 2ft3_A          190 --DLPETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQ-IRMIEN-GSLSFLPTLRELHLDNNK-LSRVPAG----  259 (332)
T ss_dssp             --SSCSSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSSC-CCCCCT-TGGGGCTTCCEEECCSSC-CCBCCTT----
T ss_pred             --cccCCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCc-CCcCCh-hHhhCCCCCCEEECCCCc-CeecChh----
Confidence              234788888888743 33333 333447888888888774 444433 245778888888888875 5555442    


Q ss_pred             CCCccCccccccCCCCeeecCCCcCCceeccCCCc---ccccCCCcceEeecCCCCC--ccccCCCCCCCCceEEEEe
Q 038576          313 GDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNN---CAFKFPSLERLVVNRCPNM--KIFSEGELSTPKLQKVQMS  385 (411)
Q Consensus       313 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~---~~~~~~~L~~L~i~~C~~l--~~~p~~~~~~~~L~~l~l~  385 (411)
                              ...+++|+.|+++++ .++.++.....   ....+++|+.|++.+++-.  ...|..+..+++|+.+++.
T Consensus       260 --------l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~  328 (332)
T 2ft3_A          260 --------LPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG  328 (332)
T ss_dssp             --------GGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-
T ss_pred             --------hhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcc
Confidence                    334888888888885 46666321110   0011477888988887633  2233445578888888886

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.88  E-value=2.5e-21  Score=180.13  Aligned_cols=112  Identities=24%  Similarity=0.348  Sum_probs=60.3

Q ss_pred             CCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCccc
Q 038576            3 LLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPPNV   79 (411)
Q Consensus         3 l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~~~   79 (411)
                      ++.+|..+.  .+|++|++++|.++.  +..++++++|++|++++|.++.+ |..++++++|++|++++ +.++.+|.. 
T Consensus        45 l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~-  120 (332)
T 2ft3_A           45 LKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK-NHLVEIPPN-  120 (332)
T ss_dssp             CSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS-SCCCSCCSS-
T ss_pred             ccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC-CcCCccCcc-
Confidence            344554442  356666666665555  34555566666666666655544 44555666666666665 355555544 


Q ss_pred             ccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccC
Q 038576           80 ISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDE  132 (411)
Q Consensus        80 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  132 (411)
                      +.  ++|++|++++|.+..            .....+.++++|++|++++|..
T Consensus       121 ~~--~~L~~L~l~~n~i~~------------~~~~~~~~l~~L~~L~l~~n~l  159 (332)
T 2ft3_A          121 LP--SSLVELRIHDNRIRK------------VPKGVFSGLRNMNCIEMGGNPL  159 (332)
T ss_dssp             CC--TTCCEEECCSSCCCC------------CCSGGGSSCSSCCEEECCSCCC
T ss_pred             cc--ccCCEEECCCCccCc------------cCHhHhCCCccCCEEECCCCcc
Confidence            22  556666666655542            1123355556666666665554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.88  E-value=1.8e-21  Score=188.63  Aligned_cols=290  Identities=17%  Similarity=0.162  Sum_probs=203.7

Q ss_pred             CCCCChhhhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccC
Q 038576            3 LLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISS   82 (411)
Q Consensus         3 l~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~   82 (411)
                      ++.+| .++++.+|++|++++|.++..+ ++.+++|++|++++|.++.+|  ++++++|++|++++ +.++.++   ++.
T Consensus        54 l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~-N~l~~l~---~~~  125 (457)
T 3bz5_A           54 ITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDT-NKLTKLD---VSQ  125 (457)
T ss_dssp             CCCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCS-SCCSCCC---CTT
T ss_pred             cccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCC-CcCCeec---CCC
Confidence            56677 6899999999999999998843 889999999999999999886  89999999999999 5788775   789


Q ss_pred             CCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeecc-CCcCCcccccCCCCcEEEEEecCCccccCc
Q 038576           83 LSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQD-EKTLPRDLSFFKMLQRYRILIGDSREYDAW  161 (411)
Q Consensus        83 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~  161 (411)
                      +++|++|++++|.+..               -.++++++|++|++++|. ...+  .+..+++|+.|+++.+....++ +
T Consensus       126 l~~L~~L~l~~N~l~~---------------l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~-l  187 (457)
T 3bz5_A          126 NPLLTYLNCARNTLTE---------------IDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD-V  187 (457)
T ss_dssp             CTTCCEEECTTSCCSC---------------CCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC-C
T ss_pred             CCcCCEEECCCCccce---------------eccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec-c
Confidence            9999999999998864               247788999999999984 4444  4678899999999888776665 5


Q ss_pred             CCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCC
Q 038576          162 DGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDL  241 (411)
Q Consensus       162 ~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L  241 (411)
                      ....+++.|++..+.-...                      .+..+++|++|      ++.++. ++.++   ...+++|
T Consensus       188 ~~l~~L~~L~l~~N~l~~~----------------------~l~~l~~L~~L------~Ls~N~-l~~ip---~~~l~~L  235 (457)
T 3bz5_A          188 SQNKLLNRLNCDTNNITKL----------------------DLNQNIQLTFL------DCSSNK-LTEID---VTPLTQL  235 (457)
T ss_dssp             TTCTTCCEEECCSSCCSCC----------------------CCTTCTTCSEE------ECCSSC-CSCCC---CTTCTTC
T ss_pred             ccCCCCCEEECcCCcCCee----------------------ccccCCCCCEE------ECcCCc-ccccC---ccccCCC
Confidence            5577888888755322111                      12356778888      887765 44443   4577888


Q ss_pred             cEEEecCCcCCccCCCCCCCCCCcC----------eEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCC
Q 038576          242 EKLSIFMCDNLTHLVPSSTSFQNLT----------TLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDD  311 (411)
Q Consensus       242 ~~L~l~~c~~l~~~~~~~~~~~~L~----------~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  311 (411)
                      +.|+++++ .+.+.+ ... +++|+          .|++++|.....++    .+.+++|+.|++++|..++.++.... 
T Consensus       236 ~~L~l~~N-~l~~~~-~~~-l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~~~~-  307 (457)
T 3bz5_A          236 TYFDCSVN-PLTELD-VST-LSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDCQAA-  307 (457)
T ss_dssp             SEEECCSS-CCSCCC-CTT-CTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEECTTC-
T ss_pred             CEEEeeCC-cCCCcC-HHH-CCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceeccCCC-
Confidence            88888874 343332 222 55444          45555555554443    25678888888888887777764211 


Q ss_pred             CCCCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccc
Q 038576          312 EGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIF  369 (411)
Q Consensus       312 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~  369 (411)
                       .+..+  ....+++|+.|+++++ +++.++  -    ..+++|+.|+++++ ++..+
T Consensus       308 -~L~~L--~l~~~~~L~~L~L~~N-~l~~l~--l----~~l~~L~~L~l~~N-~l~~l  354 (457)
T 3bz5_A          308 -GITEL--DLSQNPKLVYLYLNNT-ELTELD--V----SHNTKLKSLSCVNA-HIQDF  354 (457)
T ss_dssp             -CCSCC--CCTTCTTCCEEECTTC-CCSCCC--C----TTCTTCSEEECCSS-CCCBC
T ss_pred             -cceEe--chhhcccCCEEECCCC-cccccc--c----ccCCcCcEEECCCC-CCCCc
Confidence             11111  2334566666666664 455541  1    33688888888773 45443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.87  E-value=2.5e-21  Score=195.61  Aligned_cols=139  Identities=17%  Similarity=0.213  Sum_probs=113.6

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPN   78 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~   78 (411)
                      .++++|..+.  .++++|+|++|.++.  +.+|.++++|++|+|++|.|+.+|+ +|+++++|++|+|++ +.++.+|.+
T Consensus        42 ~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~-N~l~~l~~~  118 (635)
T 4g8a_A           42 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALG  118 (635)
T ss_dssp             CCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT-CCCCEECGG
T ss_pred             CcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccC-CcCCCCCHH
Confidence            4678887664  478999999999988  4679999999999999999998865 588999999999999 578889887


Q ss_pred             cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCc--CCcccccCCCCcEEEEEecCC
Q 038576           79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKT--LPRDLSFFKMLQRYRILIGDS  155 (411)
Q Consensus        79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~l~~~~~L~~L~i~~~~~  155 (411)
                      +++++++|++|++++|.+..            .....++++++|++|++++|.+..  .|..++.+++|++|++..+..
T Consensus       119 ~f~~L~~L~~L~Ls~N~l~~------------l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          119 AFSGLSSLQKLVAVETNLAS------------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             GGTTCTTCCEEECTTSCCCC------------STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             HhcCCCCCCEEECCCCcCCC------------CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence            78999999999999998764            222457888999999999887554  466777888999998876554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.87  E-value=1.2e-21  Score=181.80  Aligned_cols=210  Identities=21%  Similarity=0.272  Sum_probs=170.6

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVI   80 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l   80 (411)
                      .++.+|..+.++.+|++|++++|.++. |..++++++|++|++++|.++.+|..++++++|++|++++|+....+|.. +
T Consensus        92 ~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~-~  170 (328)
T 4fcg_A           92 PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEP-L  170 (328)
T ss_dssp             CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSC-S
T ss_pred             CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChh-H
Confidence            467899999999999999999999989 88899999999999999999999999999999999999999889988876 4


Q ss_pred             c---------CCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEE
Q 038576           81 S---------SLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRIL  151 (411)
Q Consensus        81 ~---------~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~  151 (411)
                      .         .+++|++|++++|.+..             .+..+.++++|++|++++|....+|..+..+++|+.|+++
T Consensus       171 ~~~~~~~~~~~l~~L~~L~L~~n~l~~-------------lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls  237 (328)
T 4fcg_A          171 ASTDASGEHQGLVNLQSLRLEWTGIRS-------------LPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR  237 (328)
T ss_dssp             EEEC-CCCEEESTTCCEEEEEEECCCC-------------CCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred             hhccchhhhccCCCCCEEECcCCCcCc-------------chHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence            4         49999999999998752             3477899999999999999988888888777777777654


Q ss_pred             ecCCccccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccc
Q 038576          152 IGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIF  231 (411)
Q Consensus       152 ~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~  231 (411)
                                                                                             ++.....++
T Consensus       238 -----------------------------------------------------------------------~n~~~~~~p  246 (328)
T 4fcg_A          238 -----------------------------------------------------------------------GCTALRNYP  246 (328)
T ss_dssp             -----------------------------------------------------------------------TCTTCCBCC
T ss_pred             -----------------------------------------------------------------------CCcchhhhH
Confidence                                                                                   222111111


Q ss_pred             cccccCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEccc
Q 038576          232 KQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVC  299 (411)
Q Consensus       232 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c  299 (411)
                       .....+++|++|++++|+.....+.....+++|+.|++++|...+.++.  .++.+++|+.+++...
T Consensus       247 -~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          247 -PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS--LIAQLPANCIILVPPH  311 (328)
T ss_dssp             -CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG--GGGGSCTTCEEECCGG
T ss_pred             -HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH--HHhhccCceEEeCCHH
Confidence             1234677788888888777666665555588889999988888887753  4678888888888753

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.87  E-value=1.1e-21  Score=189.92  Aligned_cols=86  Identities=16%  Similarity=0.130  Sum_probs=45.1

Q ss_pred             CCCCChhhhccccCcEEEecCCcCCC--CccccccccC-------------cEEEeeCCccccchHHhcCCCCCCEEecC
Q 038576            3 LLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKL-------------VILALRGSDMEELAGEIGQLTQLRLLNLS   67 (411)
Q Consensus         3 l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L-------------~~L~L~~~~l~~lp~~i~~l~~L~~L~L~   67 (411)
                      +..+|++++++++|++|++++|.+..  |..++++.+|             ++|++++|.++.+|..   .++|++|+++
T Consensus        23 l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~---~~~L~~L~l~   99 (454)
T 1jl5_A           23 LTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL---PPHLESLVAS   99 (454)
T ss_dssp             -----------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC---CTTCSEEECC
T ss_pred             hhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC---cCCCCEEEcc
Confidence            45667777777777777777776543  6666665543             6677776666665542   2566666666


Q ss_pred             CCCCccccCcccccCCCCccEEEeccccc
Q 038576           68 KCFELKVIPPNVISSLSRLEELYIGQSPI   96 (411)
Q Consensus        68 ~c~~~~~~~~~~l~~L~~L~~L~l~~~~~   96 (411)
                      + +.++.+|..    +++|++|++++|.+
T Consensus       100 ~-n~l~~lp~~----~~~L~~L~l~~n~l  123 (454)
T 1jl5_A          100 C-NSLTELPEL----PQSLKSLLVDNNNL  123 (454)
T ss_dssp             S-SCCSSCCCC----CTTCCEEECCSSCC
T ss_pred             C-CcCCccccc----cCCCcEEECCCCcc
Confidence            6 455555532    25566666665554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.86  E-value=1.1e-21  Score=180.97  Aligned_cols=246  Identities=14%  Similarity=0.166  Sum_probs=153.0

Q ss_pred             ccCcEEEecCCcCC---C-CccccccccCcEEEeeC-Cccc-cchHHhcCCCCCCEEecCCCCCcc-ccCcccccCCCCc
Q 038576           14 QNLQTLSLDDCELG---D-MAIIGDLKKLVILALRG-SDME-ELAGEIGQLTQLRLLNLSKCFELK-VIPPNVISSLSRL   86 (411)
Q Consensus        14 ~~L~~L~l~~~~l~---~-~~~l~~l~~L~~L~L~~-~~l~-~lp~~i~~l~~L~~L~L~~c~~~~-~~~~~~l~~L~~L   86 (411)
                      .+++.|+++++.++   . |..++++++|++|++++ +.+. .+|..++++++|++|++++| .+. .+|.. ++++++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~-~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDF-LSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGG-GGGCTTC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC-eeCCcCCHH-HhCCCCC
Confidence            46778888888765   3 67788888888888885 6666 67777888888888888884 454 55655 7788888


Q ss_pred             cEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCC-cCCcccccCC-CCcEEEEEecCCccccCcCCc
Q 038576           87 EELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEK-TLPRDLSFFK-MLQRYRILIGDSREYDAWDGI  164 (411)
Q Consensus        87 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~l~~~~-~L~~L~i~~~~~~~~~~~~~~  164 (411)
                      ++|++++|.+..            ..+..+.++++|++|++++|.+. .+|..+..+. +|+.|++..+...        
T Consensus       128 ~~L~Ls~N~l~~------------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~--------  187 (313)
T 1ogq_A          128 VTLDFSYNALSG------------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT--------  187 (313)
T ss_dssp             CEEECCSSEEES------------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE--------
T ss_pred             CEEeCCCCccCC------------cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee--------
Confidence            888888887764            34467777888888888887755 6677777776 7777776522211        


Q ss_pred             cceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEE
Q 038576          165 SRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKL  244 (411)
Q Consensus       165 ~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L  244 (411)
                          .                       ..      ...+..++ |++|      ++.++. +.......+..+++|+.|
T Consensus       188 ----~-----------------------~~------~~~~~~l~-L~~L------~Ls~N~-l~~~~~~~~~~l~~L~~L  226 (313)
T 1ogq_A          188 ----G-----------------------KI------PPTFANLN-LAFV------DLSRNM-LEGDASVLFGSDKNTQKI  226 (313)
T ss_dssp             ----E-----------------------EC------CGGGGGCC-CSEE------ECCSSE-EEECCGGGCCTTSCCSEE
T ss_pred             ----c-----------------------cC------ChHHhCCc-ccEE------ECcCCc-ccCcCCHHHhcCCCCCEE
Confidence                0                       00      00011223 6777      776654 343334344567777777


Q ss_pred             EecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCcccccc
Q 038576          245 SIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVF  324 (411)
Q Consensus       245 ~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~  324 (411)
                      +++++.. ...++....+++|++|++++|.....+ + ..+..+++|+.|+++++.-...++.. .            .+
T Consensus       227 ~L~~N~l-~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p-~~l~~l~~L~~L~Ls~N~l~~~ip~~-~------------~l  290 (313)
T 1ogq_A          227 HLAKNSL-AFDLGKVGLSKNLNGLDLRNNRIYGTL-P-QGLTQLKFLHSLNVSFNNLCGEIPQG-G------------NL  290 (313)
T ss_dssp             ECCSSEE-CCBGGGCCCCTTCCEEECCSSCCEECC-C-GGGGGCTTCCEEECCSSEEEEECCCS-T------------TG
T ss_pred             ECCCCce-eeecCcccccCCCCEEECcCCcccCcC-C-hHHhcCcCCCEEECcCCcccccCCCC-c------------cc
Confidence            7776433 222222333677777777766543333 2 23466777777777776522233221 1            36


Q ss_pred             CCCCeeecCCCcCC
Q 038576          325 SELKELNLSNLQSL  338 (411)
Q Consensus       325 ~~L~~L~l~~c~~l  338 (411)
                      ++|+.|++++.+.+
T Consensus       291 ~~L~~l~l~~N~~l  304 (313)
T 1ogq_A          291 QRFDVSAYANNKCL  304 (313)
T ss_dssp             GGSCGGGTCSSSEE
T ss_pred             cccChHHhcCCCCc
Confidence            66666666665543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.86  E-value=4.6e-20  Score=171.36  Aligned_cols=266  Identities=16%  Similarity=0.189  Sum_probs=155.6

Q ss_pred             ccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccccccCccccccccccccchhh
Q 038576           36 KKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDE  115 (411)
Q Consensus        36 ~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  115 (411)
                      .++++++++++.++.+|..+.  ++|++|++++ +.++.++...++++++|++|++++|.+..            ..+..
T Consensus        31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~~~~   95 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQN-NKITEIKDGDFKNLKNLHTLILINNKISK------------ISPGA   95 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSCC--TTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSSCCCC------------BCTTT
T ss_pred             CCCeEEEecCCCccccCccCC--CCCeEEECCC-CcCCEeChhhhccCCCCCEEECCCCcCCe------------eCHHH
Confidence            367777777777777765443  5677777777 46666665447777777777777776654            23466


Q ss_pred             ccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCCccceeEEEecCCcccccccccccccccchhcc
Q 038576          116 LNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLT  195 (411)
Q Consensus       116 l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~  195 (411)
                      +.++++|++|++++|....+|..+.  ++|++|++..+.....+                                    
T Consensus        96 ~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~------------------------------------  137 (330)
T 1xku_A           96 FAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVR------------------------------------  137 (330)
T ss_dssp             TTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBC------------------------------------
T ss_pred             hcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccC------------------------------------
Confidence            7777777777777777666666553  67777777533322100                                    


Q ss_pred             cCCCccccccccchhhhchHhhhcccccccccc-ccccccccCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCC
Q 038576          196 SGGDSEALYTSFKNVENGMEAMMRGINHRRELK-QIFKQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCH  274 (411)
Q Consensus       196 ~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~-~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~  274 (411)
                           ...+..+++|++|      ++.++..-. .........+++|++|+++++. +...+...  +++|+.|++++|.
T Consensus       138 -----~~~~~~l~~L~~L------~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~--~~~L~~L~l~~n~  203 (330)
T 1xku_A          138 -----KSVFNGLNQMIVV------ELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGL--PPSLTELHLDGNK  203 (330)
T ss_dssp             -----HHHHTTCTTCCEE------ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSC--CTTCSEEECTTSC
T ss_pred             -----HhHhcCCccccEE------ECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccc--cccCCEEECCCCc
Confidence                 0012245666666      666654211 1222234566777777777643 33332221  4677777777664


Q ss_pred             CCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCC
Q 038576          275 GMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPS  354 (411)
Q Consensus       275 ~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~  354 (411)
                       ++.+.+ ..+..+++|+.|+++++. ++.+...           .+..+++|++|+++++ .++.+|..-    ..+++
T Consensus       204 -l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~-----------~~~~l~~L~~L~L~~N-~l~~lp~~l----~~l~~  264 (330)
T 1xku_A          204 -ITKVDA-ASLKGLNNLAKLGLSFNS-ISAVDNG-----------SLANTPHLRELHLNNN-KLVKVPGGL----ADHKY  264 (330)
T ss_dssp             -CCEECT-GGGTTCTTCCEEECCSSC-CCEECTT-----------TGGGSTTCCEEECCSS-CCSSCCTTT----TTCSS
T ss_pred             -CCccCH-HHhcCCCCCCEEECCCCc-CceeChh-----------hccCCCCCCEEECCCC-cCccCChhh----ccCCC
Confidence             444322 235667777777777765 4444321           2234677777777776 455553222    23577


Q ss_pred             cceEeecCCCCCccccCCCC-------CCCCceEEEEeccc
Q 038576          355 LERLVVNRCPNMKIFSEGEL-------STPKLQKVQMSLVD  388 (411)
Q Consensus       355 L~~L~i~~C~~l~~~p~~~~-------~~~~L~~l~l~~~c  388 (411)
                      |++|++.++ .+..++...+       ..++|+.+++.+|.
T Consensus       265 L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~  304 (330)
T 1xku_A          265 IQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  304 (330)
T ss_dssp             CCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             cCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc
Confidence            777777774 4666654332       23566777775443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.84  E-value=3.7e-20  Score=178.96  Aligned_cols=232  Identities=17%  Similarity=0.233  Sum_probs=146.7

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccch-HHhcCCCCCCEEecCCCCCccccCcc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELA-GEIGQLTQLRLLNLSKCFELKVIPPN   78 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~~~~~~~~   78 (411)
                      .++.+|..+.  .++++|++++|.++.  +..|.++++|++|++++|.++.++ ..+.++++|++|++++ +.++.++..
T Consensus        54 ~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~~  130 (440)
T 3zyj_A           54 NLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD-NRLTTIPNG  130 (440)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS-SCCSSCCTT
T ss_pred             CcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC-CcCCeeCHh
Confidence            3566776654  577888888888776  567778888888888888777654 4577788888888888 577777766


Q ss_pred             cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeecc-CCcCCc-ccccCCCCcEEEEEecCCc
Q 038576           79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQD-EKTLPR-DLSFFKMLQRYRILIGDSR  156 (411)
Q Consensus        79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~-~l~~~~~L~~L~i~~~~~~  156 (411)
                      .+..+++|++|++++|.+..            .....+.++++|++|+++++. ...++. .+..+++|++|++..+...
T Consensus       131 ~~~~l~~L~~L~L~~N~i~~------------~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  198 (440)
T 3zyj_A          131 AFVYLSKLKELWLRNNPIES------------IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR  198 (440)
T ss_dssp             TSCSCSSCCEEECCSCCCCE------------ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred             HhhccccCceeeCCCCcccc------------cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence            67788888888888877653            223567777888888887743 444444 3566777777777644444


Q ss_pred             cccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhcccccccccccccccccc
Q 038576          157 EYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESS  236 (411)
Q Consensus       157 ~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~  236 (411)
                      .++++.                                           .+++|++|      ++.++. +..+....+.
T Consensus       199 ~~~~~~-------------------------------------------~l~~L~~L------~Ls~N~-l~~~~~~~~~  228 (440)
T 3zyj_A          199 EIPNLT-------------------------------------------PLIKLDEL------DLSGNH-LSAIRPGSFQ  228 (440)
T ss_dssp             SCCCCT-------------------------------------------TCSSCCEE------ECTTSC-CCEECTTTTT
T ss_pred             cccccC-------------------------------------------CCcccCEE------ECCCCc-cCccChhhhc
Confidence            333222                                           34566666      666653 4444444455


Q ss_pred             CCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccc
Q 038576          237 NAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCV  300 (411)
Q Consensus       237 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  300 (411)
                      .+++|++|+++++....-.......+++|+.|++++| .++.++. ..+..+++|+.|++.+++
T Consensus       229 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPH-DLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCT-TTTSSCTTCCEEECCSSC
T ss_pred             cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccCh-hHhccccCCCEEEcCCCC
Confidence            6666777777664322222222333666777777665 3444422 234556677777766654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.84  E-value=4.7e-20  Score=172.99  Aligned_cols=276  Identities=20%  Similarity=0.132  Sum_probs=166.8

Q ss_pred             hccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCccE
Q 038576           11 GLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEE   88 (411)
Q Consensus        11 ~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~   88 (411)
                      ..|....+.+.+++.++. |..+.  ++|++|++++|.++.+|. .++++++|++|++++ +.++.++...++++++|++
T Consensus        28 ~~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           28 LSCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTS-NGINTIEEDSFSSLGSLEH  104 (353)
T ss_dssp             CEECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCC-CccCccCHhhcCCCCCCCE
Confidence            345566667777777777 65554  478888888888887765 577888888888888 4677776555788888888


Q ss_pred             EEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc--ccccCCCCcEEEEEecCCccccCcCCccc
Q 038576           89 LYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR--DLSFFKMLQRYRILIGDSREYDAWDGISR  166 (411)
Q Consensus        89 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~i~~~~~~~~~~~~~~~~  166 (411)
                      |++++|.+..            .....+.++++|++|++++|....+|.  .+..+++|++|++..+.            
T Consensus       105 L~Ls~n~l~~------------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~------------  160 (353)
T 2z80_A          105 LDLSYNYLSN------------LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD------------  160 (353)
T ss_dssp             EECCSSCCSS------------CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS------------
T ss_pred             EECCCCcCCc------------CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc------------
Confidence            8888887753            222447778888888888887777765  45667777777665332            


Q ss_pred             eeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEe
Q 038576          167 ISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSI  246 (411)
Q Consensus       167 l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l  246 (411)
                                                                                 .+..+.......+++|++|++
T Consensus       161 -----------------------------------------------------------~~~~~~~~~~~~l~~L~~L~l  181 (353)
T 2z80_A          161 -----------------------------------------------------------TFTKIQRKDFAGLTFLEELEI  181 (353)
T ss_dssp             -----------------------------------------------------------SCCEECTTTTTTCCEEEEEEE
T ss_pred             -----------------------------------------------------------cccccCHHHccCCCCCCEEEC
Confidence                                                                       122222222234455556666


Q ss_pred             cCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCC
Q 038576          247 FMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSE  326 (411)
Q Consensus       247 ~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~  326 (411)
                      +++......+.....+++|++|++++|. ++.+ +......+++|+.|+++++. ++........        .....+.
T Consensus       182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~-~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~--------~~~~~~~  250 (353)
T 2z80_A          182 DASDLQSYEPKSLKSIQNVSHLILHMKQ-HILL-LEIFVDVTSSVECLELRDTD-LDTFHFSELS--------TGETNSL  250 (353)
T ss_dssp             EETTCCEECTTTTTTCSEEEEEEEECSC-STTH-HHHHHHHTTTEEEEEEESCB-CTTCCCC--------------CCCC
T ss_pred             CCCCcCccCHHHHhccccCCeecCCCCc-cccc-hhhhhhhcccccEEECCCCc-cccccccccc--------cccccch
Confidence            5543222222233336677777777665 3443 23344557788888887765 4443221111        1122455


Q ss_pred             CCeeecCCCcCCceeccC--CCcccccCCCcceEeecCCCCCccccCCC-CCCCCceEEEEec
Q 038576          327 LKELNLSNLQSLTSFSCS--GNNCAFKFPSLERLVVNRCPNMKIFSEGE-LSTPKLQKVQMSL  386 (411)
Q Consensus       327 L~~L~l~~c~~l~~~~~~--~~~~~~~~~~L~~L~i~~C~~l~~~p~~~-~~~~~L~~l~l~~  386 (411)
                      ++.+++.++. +.+....  +... ..+++|++|+++++ ++..+|.+. ..+++|++|++.+
T Consensus       251 l~~l~L~~~~-l~~~~l~~l~~~l-~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~  310 (353)
T 2z80_A          251 IKKFTFRNVK-ITDESLFQVMKLL-NQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHT  310 (353)
T ss_dssp             CCEEEEESCB-CCHHHHHHHHHHH-HTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             hhcccccccc-ccCcchhhhHHHH-hcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeC
Confidence            6666666652 3221000  0001 24578888888885 677788765 5788888888853

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.84  E-value=3.2e-20  Score=179.98  Aligned_cols=231  Identities=17%  Similarity=0.202  Sum_probs=132.3

Q ss_pred             CCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccch-HHhcCCCCCCEEecCCCCCccccCccc
Q 038576            3 LLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELA-GEIGQLTQLRLLNLSKCFELKVIPPNV   79 (411)
Q Consensus         3 l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~~~~~~~~~   79 (411)
                      ++.+|..+.  .++++|++++|.++.  +..|.++++|++|++++|.++.++ ..+.++++|++|++++ +.++.++...
T Consensus        66 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~  142 (452)
T 3zyi_A           66 LSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD-NWLTVIPSGA  142 (452)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCSBCCTTT
T ss_pred             cCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC-CcCCccChhh
Confidence            455565443  467777777777666  456667777777777777666554 4566677777777777 4566666555


Q ss_pred             ccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeecc-CCcCCc-ccccCCCCcEEEEEecCCcc
Q 038576           80 ISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQD-EKTLPR-DLSFFKMLQRYRILIGDSRE  157 (411)
Q Consensus        80 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~-~l~~~~~L~~L~i~~~~~~~  157 (411)
                      ++.+++|++|++++|.+..            .....+.++++|++|++++|. ...++. .+..+++|+.|+++.+....
T Consensus       143 ~~~l~~L~~L~L~~N~l~~------------~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  210 (452)
T 3zyi_A          143 FEYLSKLRELWLRNNPIES------------IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD  210 (452)
T ss_dssp             SSSCTTCCEEECCSCCCCE------------ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred             hcccCCCCEEECCCCCcce------------eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence            6667777777777776543            222456666777777776633 444443 34556666666665444332


Q ss_pred             ccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccC
Q 038576          158 YDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSN  237 (411)
Q Consensus       158 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~  237 (411)
                      ++.+                                           ..+++|++|      ++.++. +..+....+..
T Consensus       211 ~~~~-------------------------------------------~~l~~L~~L------~Ls~N~-l~~~~~~~~~~  240 (452)
T 3zyi_A          211 MPNL-------------------------------------------TPLVGLEEL------EMSGNH-FPEIRPGSFHG  240 (452)
T ss_dssp             CCCC-------------------------------------------TTCTTCCEE------ECTTSC-CSEECGGGGTT
T ss_pred             cccc-------------------------------------------cccccccEE------ECcCCc-CcccCcccccC
Confidence            2222                                           234556666      666554 44444444456


Q ss_pred             CCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccc
Q 038576          238 AKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCV  300 (411)
Q Consensus       238 ~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  300 (411)
                      +++|++|+++++......+.....+++|+.|++++| .++.++. ..+..+++|+.|++.+++
T Consensus       241 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPH-DLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCT-TSSTTCTTCCEEECCSSC
T ss_pred             ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccCh-HHhccccCCCEEEccCCC
Confidence            666666666664322222222333666666666665 3444422 234556666666666553

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.84  E-value=5.7e-21  Score=176.09  Aligned_cols=233  Identities=21%  Similarity=0.179  Sum_probs=180.3

Q ss_pred             CCChhhhccccCcEEEecC-CcCCC--CccccccccCcEEEeeCCccc-cchHHhcCCCCCCEEecCCCCCcc-ccCccc
Q 038576            5 ALPSSLGLLQNLQTLSLDD-CELGD--MAIIGDLKKLVILALRGSDME-ELAGEIGQLTQLRLLNLSKCFELK-VIPPNV   79 (411)
Q Consensus         5 ~lp~~l~~l~~L~~L~l~~-~~l~~--~~~l~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~L~~c~~~~-~~~~~~   79 (411)
                      .+|..++++.+|++|++++ |.+..  |..++++++|++|++++|.++ .+|..++++++|++|++++| .+. .+|.. 
T Consensus        67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~-  144 (313)
T 1ogq_A           67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPS-  144 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS-EEESCCCGG-
T ss_pred             ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCC-ccCCcCChH-
Confidence            5899999999999999996 77765  888999999999999999998 88889999999999999994 566 66766 


Q ss_pred             ccCCCCccEEEecccccccCccccccccccccchhhccCCC-CCCEEEEeeccCC-cCCcccccCCCCcEEEEEecCCcc
Q 038576           80 ISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLS-KLTSLEILIQDEK-TLPRDLSFFKMLQRYRILIGDSRE  157 (411)
Q Consensus        80 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~i~~~~~~~  157 (411)
                      ++.+++|++|++++|.+..            ..+..+.+++ +|++|++++|... .+|..+..++ |+.|+++.+....
T Consensus       145 ~~~l~~L~~L~L~~N~l~~------------~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~  211 (313)
T 1ogq_A          145 ISSLPNLVGITFDGNRISG------------AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG  211 (313)
T ss_dssp             GGGCTTCCEEECCSSCCEE------------ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE
T ss_pred             HhcCCCCCeEECcCCcccC------------cCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC
Confidence            8999999999999999875            4457888888 9999999999855 6777777776 9998876332110


Q ss_pred             ccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccC
Q 038576          158 YDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSN  237 (411)
Q Consensus       158 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~  237 (411)
                      .                                         ....+..+++|++|      ++.++.-....+.  ...
T Consensus       212 ~-----------------------------------------~~~~~~~l~~L~~L------~L~~N~l~~~~~~--~~~  242 (313)
T 1ogq_A          212 D-----------------------------------------ASVLFGSDKNTQKI------HLAKNSLAFDLGK--VGL  242 (313)
T ss_dssp             C-----------------------------------------CGGGCCTTSCCSEE------ECCSSEECCBGGG--CCC
T ss_pred             c-----------------------------------------CCHHHhcCCCCCEE------ECCCCceeeecCc--ccc
Confidence            0                                         00112356788888      8888763222322  457


Q ss_pred             CCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccc
Q 038576          238 AKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITE  304 (411)
Q Consensus       238 ~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~  304 (411)
                      +++|++|+++++......+.....+++|+.|++++|.....++..   ..+++|+.+++.+++.+..
T Consensus       243 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~---~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG---GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS---TTGGGSCGGGTCSSSEEES
T ss_pred             cCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC---ccccccChHHhcCCCCccC
Confidence            899999999986543344444455899999999998655555432   7789999999998875543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.83  E-value=3.4e-19  Score=172.45  Aligned_cols=305  Identities=15%  Similarity=0.124  Sum_probs=171.8

Q ss_pred             CCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCccccc
Q 038576            3 LLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVIS   81 (411)
Q Consensus         3 l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~   81 (411)
                      ++.+|..   ..+|++|++++|.++. |..   ..+|++|++++|.++.+|..   .++|++|++++ +.++.+| + ++
T Consensus        83 l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~-n~l~~lp-~-~~  150 (454)
T 1jl5_A           83 LSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSN-NQLEKLP-E-LQ  150 (454)
T ss_dssp             CSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCS-SCCSSCC-C-CT
T ss_pred             cccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcC-CCCCCCc-c-cC
Confidence            4455542   3578888888888777 433   36778888888777765432   15778888877 4666677 3 77


Q ss_pred             CCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCc
Q 038576           82 SLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAW  161 (411)
Q Consensus        82 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~  161 (411)
                      ++++|++|++++|.+..  +|           ..   ..+|++|++++|....+| .++.+++|++|++..+....++.+
T Consensus       151 ~l~~L~~L~l~~N~l~~--lp-----------~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~  213 (454)
T 1jl5_A          151 NSSFLKIIDVDNNSLKK--LP-----------DL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL  213 (454)
T ss_dssp             TCTTCCEEECCSSCCSC--CC-----------CC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC
T ss_pred             CCCCCCEEECCCCcCcc--cC-----------CC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC
Confidence            78888888887776642  22           11   136666666666665555 456666666666665555444433


Q ss_pred             CCccceeEEEecCCcccccccccccccccchhcccCCCccc-cccccchhhhchHhhhccccccccccccccccccCCCC
Q 038576          162 DGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEA-LYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKD  240 (411)
Q Consensus       162 ~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~  240 (411)
                        ..+++.|++.++....+.  .+..++.++.+........ .....++|++|      ++.++. ++.++.    .+++
T Consensus       214 --~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L------~l~~N~-l~~l~~----~~~~  278 (454)
T 1jl5_A          214 --PLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTLPDLPPSLEAL------NVRDNY-LTDLPE----LPQS  278 (454)
T ss_dssp             --CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCSCCTTCCEE------ECCSSC-CSCCCC----CCTT
T ss_pred             --cCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCcccccccccCEE------ECCCCc-ccccCc----ccCc
Confidence              345666666554322222  2334444444432222111 01134678888      887765 444433    3478


Q ss_pred             CcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCcc
Q 038576          241 LEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQD  320 (411)
Q Consensus       241 L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~  320 (411)
                      |++|+++++. +.+.+..   .++|+.|++++|. ++.++     ...++|+.|+++++. +..++.             
T Consensus       279 L~~L~ls~N~-l~~l~~~---~~~L~~L~l~~N~-l~~i~-----~~~~~L~~L~Ls~N~-l~~lp~-------------  334 (454)
T 1jl5_A          279 LTFLDVSENI-FSGLSEL---PPNLYYLNASSNE-IRSLC-----DLPPSLEELNVSNNK-LIELPA-------------  334 (454)
T ss_dssp             CCEEECCSSC-CSEESCC---CTTCCEEECCSSC-CSEEC-----CCCTTCCEEECCSSC-CSCCCC-------------
T ss_pred             CCEEECcCCc-cCcccCc---CCcCCEEECcCCc-CCccc-----CCcCcCCEEECCCCc-cccccc-------------
Confidence            8888888743 4433221   3678888887764 33332     112578888888765 444432             


Q ss_pred             ccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCc--cccCCCCCC-------------CCceEEEEe
Q 038576          321 EIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMK--IFSEGELST-------------PKLQKVQMS  385 (411)
Q Consensus       321 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~--~~p~~~~~~-------------~~L~~l~l~  385 (411)
                        .+++|+.|+++++ .++.+|.   .    +++|++|+++++.--.  .+|.++..+             ++|+.|+++
T Consensus       335 --~~~~L~~L~L~~N-~l~~lp~---~----l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls  404 (454)
T 1jl5_A          335 --LPPRLERLIASFN-HLAEVPE---L----PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVE  404 (454)
T ss_dssp             --CCTTCCEEECCSS-CCSCCCC---C----CTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------
T ss_pred             --cCCcCCEEECCCC-ccccccc---h----hhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECC
Confidence              1577888888776 5666632   2    4778888887754222  345544433             677777775

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.83  E-value=7.8e-20  Score=171.47  Aligned_cols=261  Identities=16%  Similarity=0.164  Sum_probs=183.6

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC-C-ccccccccCcEEEeeCCccccch-HHhcCCCCCCEEecCCCCCccccCcc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD-M-AIIGDLKKLVILALRGSDMEELA-GEIGQLTQLRLLNLSKCFELKVIPPN   78 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~-~-~~l~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~~~~~~~~   78 (411)
                      .++.+|..+.  .+|++|++++|.++. + ..+.++++|++|++++|.++.++ ..++++++|++|++++ +.++.++..
T Consensus        42 ~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~  118 (353)
T 2z80_A           42 SLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY-NYLSNLSSS  118 (353)
T ss_dssp             TCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCSSCCHH
T ss_pred             Cccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC-CcCCcCCHh
Confidence            4678888765  489999999999998 4 47999999999999999999774 5699999999999999 688899887


Q ss_pred             cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeecc-CCcCC-cccccCCCCcEEEEEecCCc
Q 038576           79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQD-EKTLP-RDLSFFKMLQRYRILIGDSR  156 (411)
Q Consensus        79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~-~~l~~~~~L~~L~i~~~~~~  156 (411)
                      .++++++|++|++++|.+..  ++         ....+.++++|++|++++|. ...++ ..+..+++|++|++..+...
T Consensus       119 ~~~~l~~L~~L~L~~n~l~~--l~---------~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  187 (353)
T 2z80_A          119 WFKPLSSLTFLNLLGNPYKT--LG---------ETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ  187 (353)
T ss_dssp             HHTTCTTCSEEECTTCCCSS--SC---------SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             HhCCCccCCEEECCCCCCcc--cC---------chhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence            78999999999999998763  11         11368889999999999984 55554 46788899999999866544


Q ss_pred             cccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhcccccccccccccccccc
Q 038576          157 EYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESS  236 (411)
Q Consensus       157 ~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~  236 (411)
                      ....                                         ..+..+++|++|      ++.++. +..++.....
T Consensus       188 ~~~~-----------------------------------------~~l~~l~~L~~L------~l~~n~-l~~~~~~~~~  219 (353)
T 2z80_A          188 SYEP-----------------------------------------KSLKSIQNVSHL------ILHMKQ-HILLLEIFVD  219 (353)
T ss_dssp             EECT-----------------------------------------TTTTTCSEEEEE------EEECSC-STTHHHHHHH
T ss_pred             ccCH-----------------------------------------HHHhccccCCee------cCCCCc-cccchhhhhh
Confidence            2100                                         011245667777      776655 3444433334


Q ss_pred             CCCCCcEEEecCCcCCccCCC----CCCCCCCcCeEeecCCCCCcccc--chHhhhccccccEEeEcccccccccccccC
Q 038576          237 NAKDLEKLSIFMCDNLTHLVP----SSTSFQNLTTLTVWGCHGMINVL--TSSTARSLVRLRQMTIKVCVMITEIVADED  310 (411)
Q Consensus       237 ~~~~L~~L~l~~c~~l~~~~~----~~~~~~~L~~L~l~~c~~l~~~~--~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~  310 (411)
                      .+++|+.|+++++. +.....    .....+.++.++++++..-..-.  ....+..+++|+.|+++++. ++.++... 
T Consensus       220 ~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~-  296 (353)
T 2z80_A          220 VTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGI-  296 (353)
T ss_dssp             HTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTT-
T ss_pred             hcccccEEECCCCc-cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHH-
Confidence            57888888888753 322211    11225667788887764322100  01235678888888888875 66554432 


Q ss_pred             CCCCCccCccccccCCCCeeecCCCcC
Q 038576          311 DEGDNYAAQDEIVFSELKELNLSNLQS  337 (411)
Q Consensus       311 ~~~~~~~~~~~~~~~~L~~L~l~~c~~  337 (411)
                                +..+++|++|++++++-
T Consensus       297 ----------~~~l~~L~~L~L~~N~~  313 (353)
T 2z80_A          297 ----------FDRLTSLQKIWLHTNPW  313 (353)
T ss_dssp             ----------TTTCTTCCEEECCSSCB
T ss_pred             ----------HhcCCCCCEEEeeCCCc
Confidence                      23478888888888753

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.83  E-value=4.3e-19  Score=177.21  Aligned_cols=252  Identities=20%  Similarity=0.164  Sum_probs=163.3

Q ss_pred             ccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEec
Q 038576           14 QNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIG   92 (411)
Q Consensus        14 ~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~   92 (411)
                      .++++|+++++.++. |..+.  ++|++|++++|.++.+|.   .+++|++|++++ +.++.+|.    .+++|++|+++
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~-N~l~~lp~----~l~~L~~L~Ls  109 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSG-NQLTSLPV----LPPGLLELSIF  109 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECS-CCCSCCCC----CCTTCCEEEEC
T ss_pred             CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCC-CcCCcCCC----CCCCCCEEECc
Confidence            479999999999998 77665  799999999999998887   678999999999 57888886    67999999999


Q ss_pred             ccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCCccceeEEEe
Q 038576           93 QSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKL  172 (411)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~  172 (411)
                      +|.+..  ++           .   .+++|+.|++++|.+..+|..   +++|++|+++.+....++..  +        
T Consensus       110 ~N~l~~--l~-----------~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~--~--------  160 (622)
T 3g06_A          110 SNPLTH--LP-----------A---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL--P--------  160 (622)
T ss_dssp             SCCCCC--CC-----------C---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCC--C--------
T ss_pred             CCcCCC--CC-----------C---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCc--c--------
Confidence            998753  22           2   568899999999998888864   48899998876654433321  2        


Q ss_pred             cCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCC
Q 038576          173 TNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNL  252 (411)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l  252 (411)
                                                         .+|+.|      .+.++. ++.++    ..+++|+.|+++++ .+
T Consensus       161 -----------------------------------~~L~~L------~L~~N~-l~~l~----~~~~~L~~L~Ls~N-~l  193 (622)
T 3g06_A          161 -----------------------------------SELCKL------WAYNNQ-LTSLP----MLPSGLQELSVSDN-QL  193 (622)
T ss_dssp             -----------------------------------TTCCEE------ECCSSC-CSCCC----CCCTTCCEEECCSS-CC
T ss_pred             -----------------------------------CCCCEE------ECCCCC-CCCCc----ccCCCCcEEECCCC-CC
Confidence                                               344444      444433 33333    23456666666653 23


Q ss_pred             ccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeec
Q 038576          253 THLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNL  332 (411)
Q Consensus       253 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  332 (411)
                      ..++..   +++|+.|++++|. ++.++     ..+++|+.|++++|. ++.++.               .+++|+.|++
T Consensus       194 ~~l~~~---~~~L~~L~L~~N~-l~~l~-----~~~~~L~~L~Ls~N~-L~~lp~---------------~l~~L~~L~L  248 (622)
T 3g06_A          194 ASLPTL---PSELYKLWAYNNR-LTSLP-----ALPSGLKELIVSGNR-LTSLPV---------------LPSELKELMV  248 (622)
T ss_dssp             SCCCCC---CTTCCEEECCSSC-CSSCC-----CCCTTCCEEECCSSC-CSCCCC---------------CCTTCCEEEC
T ss_pred             CCCCCc---cchhhEEECcCCc-ccccC-----CCCCCCCEEEccCCc-cCcCCC---------------CCCcCcEEEC
Confidence            332221   4566666665543 33332     123566666666553 444331               2456666666


Q ss_pred             CCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCCCceEEEEe
Q 038576          333 SNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMS  385 (411)
Q Consensus       333 ~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~  385 (411)
                      +++ .++.+|.   .    +++|+.|++++| .+..+|..+..+++|+.|+++
T Consensus       249 s~N-~L~~lp~---~----~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          249 SGN-RLTSLPM---L----PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLE  292 (622)
T ss_dssp             CSS-CCSCCCC---C----CTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECC
T ss_pred             CCC-CCCcCCc---c----cccCcEEeCCCC-CCCcCCHHHhhccccCEEEec
Confidence            664 4555522   1    356666666664 455666555566666666664

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.82  E-value=7.6e-19  Score=170.30  Aligned_cols=121  Identities=17%  Similarity=0.200  Sum_probs=71.1

Q ss_pred             CcEEEecCCcCCC-CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecc
Q 038576           16 LQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQ   93 (411)
Q Consensus        16 L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~   93 (411)
                      .+.++.++..++. |..+.  +++++|++++|.++.+ |..++++++|++|++++ +.+..++...+.++++|++|++++
T Consensus        56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR-NSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCC-CccCCcChhhccCcccCCEEECCC
Confidence            3455666555665 54443  4667777777766654 34566677777777766 456666544466667777777766


Q ss_pred             cccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc-ccccCCCCcEEEEE
Q 038576           94 SPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRIL  151 (411)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~  151 (411)
                      |.+..            .....+.++++|++|++++|.+..++. .+..+++|++|++.
T Consensus       133 n~l~~------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  179 (452)
T 3zyi_A          133 NWLTV------------IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG  179 (452)
T ss_dssp             SCCSB------------CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred             CcCCc------------cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCC
Confidence            66543            222445666666666666666555544 34445555555543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.82  E-value=1.5e-19  Score=164.35  Aligned_cols=125  Identities=22%  Similarity=0.263  Sum_probs=59.8

Q ss_pred             ccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEE
Q 038576           14 QNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELY   90 (411)
Q Consensus        14 ~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~   90 (411)
                      .+|++|++++|.++.  +..+.++++|++|++++|.++.+ |..++++++|++|++++|..++.++...+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            355555555555554  23455555555555555555543 334555555555555553334444333355555555555


Q ss_pred             ecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc-cccCCCCcEEEE
Q 038576           91 IGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRI  150 (411)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~i  150 (411)
                      +++|.+..            ..+..+.++++|++|++++|....++.. +..+++|++|++
T Consensus       112 l~~n~l~~------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  160 (285)
T 1ozn_A          112 LDRCGLQE------------LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL  160 (285)
T ss_dssp             CTTSCCCC------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCcCCE------------ECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEEC
Confidence            55554432            1223444555555555555544444332 333444444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.82  E-value=7.3e-19  Score=169.84  Aligned_cols=121  Identities=17%  Similarity=0.219  Sum_probs=69.5

Q ss_pred             CcEEEecCCcCCC-CccccccccCcEEEeeCCccccch-HHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecc
Q 038576           16 LQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELA-GEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQ   93 (411)
Q Consensus        16 L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~   93 (411)
                      .+.++.++..++. |..+.  .++++|++++|.++.++ ..++++++|++|++++ +.+..++...+.++++|++|++++
T Consensus        45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSR-NHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCS-SCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCC-CcCCccChhhccCCccCCEEECCC
Confidence            3455555555555 54443  46666666666666543 4466666666666666 456666544466666666666666


Q ss_pred             cccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc-ccccCCCCcEEEEE
Q 038576           94 SPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRIL  151 (411)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~  151 (411)
                      |.+..            .....+..+++|++|++++|.+..++. .+..+++|++|++.
T Consensus       122 n~l~~------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~  168 (440)
T 3zyj_A          122 NRLTT------------IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG  168 (440)
T ss_dssp             SCCSS------------CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred             CcCCe------------eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCC
Confidence            65543            122345666666666666666555544 34455555555543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.82  E-value=3.6e-19  Score=163.53  Aligned_cols=234  Identities=18%  Similarity=0.177  Sum_probs=121.2

Q ss_pred             CCCCChhhhccccCcEEEecCCcCCC-Cc-cccccccCcEEEeeCCccccc---hHHhcCCCCCCEEecCCCCCccccCc
Q 038576            3 LLALPSSLGLLQNLQTLSLDDCELGD-MA-IIGDLKKLVILALRGSDMEEL---AGEIGQLTQLRLLNLSKCFELKVIPP   77 (411)
Q Consensus         3 l~~lp~~l~~l~~L~~L~l~~~~l~~-~~-~l~~l~~L~~L~L~~~~l~~l---p~~i~~l~~L~~L~L~~c~~~~~~~~   77 (411)
                      ++.+|..+.  .+|++|++++|.++. +. .++++++|++|++++|.++.+   |..+..+++|++|++++ +.+..+|.
T Consensus        19 l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~-n~i~~l~~   95 (306)
T 2z66_A           19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF-NGVITMSS   95 (306)
T ss_dssp             CSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS-CSEEEEEE
T ss_pred             cccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC-CccccChh
Confidence            445554433  456666666666655 32 355666666666666655533   44555566666666666 35555555


Q ss_pred             ccccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCC-cccccCCCCcEEEEEecCCc
Q 038576           78 NVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLP-RDLSFFKMLQRYRILIGDSR  156 (411)
Q Consensus        78 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~i~~~~~~  156 (411)
                      . +..+++|++|++++|.+..  +         .....+.++++|++|++++|.....+ ..+..+              
T Consensus        96 ~-~~~l~~L~~L~l~~n~l~~--~---------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------------  149 (306)
T 2z66_A           96 N-FLGLEQLEHLDFQHSNLKQ--M---------SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL--------------  149 (306)
T ss_dssp             E-EETCTTCCEEECTTSEEES--S---------TTTTTTTTCTTCCEEECTTSCCEECSTTTTTTC--------------
T ss_pred             h-cCCCCCCCEEECCCCcccc--c---------ccchhhhhccCCCEEECCCCcCCccchhhcccC--------------
Confidence            4 5566666666666665532  0         01134555555666665555433221 223333              


Q ss_pred             cccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhcccccccccccccccccc
Q 038576          157 EYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESS  236 (411)
Q Consensus       157 ~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~  236 (411)
                                                                         ++|++|      .+.++.-.....+....
T Consensus       150 ---------------------------------------------------~~L~~L------~l~~n~l~~~~~~~~~~  172 (306)
T 2z66_A          150 ---------------------------------------------------SSLEVL------KMAGNSFQENFLPDIFT  172 (306)
T ss_dssp             ---------------------------------------------------TTCCEE------ECTTCEEGGGEECSCCT
T ss_pred             ---------------------------------------------------cCCCEE------ECCCCccccccchhHHh
Confidence                                                               444444      44444321112222334


Q ss_pred             CCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCc
Q 038576          237 NAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNY  316 (411)
Q Consensus       237 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  316 (411)
                      .+++|++|+++++.-....+.....+++|+.|++++|. ++.++.. .+..+++|+.|+++++. +......        
T Consensus       173 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~~--------  241 (306)
T 2z66_A          173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTF-PYKCLNSLQVLDYSLNH-IMTSKKQ--------  241 (306)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSG-GGTTCTTCCEEECTTSC-CCBCSSS--------
T ss_pred             hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChh-hccCcccCCEeECCCCC-CcccCHH--------
Confidence            56667777776643222222233336777777776664 3333222 24566777777777765 3333221        


Q ss_pred             cCcccccc-CCCCeeecCCCc
Q 038576          317 AAQDEIVF-SELKELNLSNLQ  336 (411)
Q Consensus       317 ~~~~~~~~-~~L~~L~l~~c~  336 (411)
                         .+..+ ++|+.|++++++
T Consensus       242 ---~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          242 ---ELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             ---SCCCCCTTCCEEECTTCC
T ss_pred             ---HHHhhhccCCEEEccCCC
Confidence               11234 367777777654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.80  E-value=2.1e-18  Score=172.21  Aligned_cols=244  Identities=19%  Similarity=0.132  Sum_probs=165.1

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVI   80 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l   80 (411)
                      .++.+|..+.  .+|++|++++|.++. |.   .+++|++|++++|.++.+|.   .+++|++|++++ +.++.+|.   
T Consensus        51 ~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~-N~l~~l~~---  118 (622)
T 3g06_A           51 GLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFS-NPLTHLPA---  118 (622)
T ss_dssp             CCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECS-CCCCCCCC---
T ss_pred             CcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcC-CcCCCCCC---
Confidence            4678888776  799999999999998 55   57899999999999999887   789999999999 67888876   


Q ss_pred             cCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccC
Q 038576           81 SSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDA  160 (411)
Q Consensus        81 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~  160 (411)
                       .+++|++|++++|.+..  +|           .   .+++|++|++++|.+..+|.   .+.+|+.|.+..+....++ 
T Consensus       119 -~l~~L~~L~L~~N~l~~--lp-----------~---~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~-  177 (622)
T 3g06_A          119 -LPSGLCKLWIFGNQLTS--LP-----------V---LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLP-  177 (622)
T ss_dssp             -CCTTCCEEECCSSCCSC--CC-----------C---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC-
T ss_pred             -CCCCcCEEECCCCCCCc--CC-----------C---CCCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCCc-
Confidence             57899999999998763  32           2   24889999999999888875   3578999998877666555 


Q ss_pred             cCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCC
Q 038576          161 WDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKD  240 (411)
Q Consensus       161 ~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~  240 (411)
                       ..+.++..|++..+...        +++               ...++|+.|      .+.++. ++.++.    .+++
T Consensus       178 -~~~~~L~~L~Ls~N~l~--------~l~---------------~~~~~L~~L------~L~~N~-l~~l~~----~~~~  222 (622)
T 3g06_A          178 -MLPSGLQELSVSDNQLA--------SLP---------------TLPSELYKL------WAYNNR-LTSLPA----LPSG  222 (622)
T ss_dssp             -CCCTTCCEEECCSSCCS--------CCC---------------CCCTTCCEE------ECCSSC-CSSCCC----CCTT
T ss_pred             -ccCCCCcEEECCCCCCC--------CCC---------------CccchhhEE------ECcCCc-ccccCC----CCCC
Confidence             22455556655442111        000               012456666      666543 333332    3466


Q ss_pred             CcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCcc
Q 038576          241 LEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQD  320 (411)
Q Consensus       241 L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~  320 (411)
                      |+.|+++++ .+..++   ..+++|+.|++++| .++.++.     .+++|+.|++++|. ++.++..            
T Consensus       223 L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N~-L~~lp~~------------  279 (622)
T 3g06_A          223 LKELIVSGN-RLTSLP---VLPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRNQ-LTRLPES------------  279 (622)
T ss_dssp             CCEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CCSCCGG------------
T ss_pred             CCEEEccCC-ccCcCC---CCCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCCC-CCcCCHH------------
Confidence            777777663 344433   22566777777665 3444432     45667777776654 5544432            


Q ss_pred             ccccCCCCeeecCCCc
Q 038576          321 EIVFSELKELNLSNLQ  336 (411)
Q Consensus       321 ~~~~~~L~~L~l~~c~  336 (411)
                      +..+++|+.|++++++
T Consensus       280 l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          280 LIHLSSETTVNLEGNP  295 (622)
T ss_dssp             GGGSCTTCEEECCSCC
T ss_pred             HhhccccCEEEecCCC
Confidence            2236667777777654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.79  E-value=3e-19  Score=164.06  Aligned_cols=214  Identities=19%  Similarity=0.151  Sum_probs=159.5

Q ss_pred             CCCCCChh-hhccccCcEEEecCCcCCC----CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccC
Q 038576            2 HLLALPSS-LGLLQNLQTLSLDDCELGD----MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIP   76 (411)
Q Consensus         2 ~l~~lp~~-l~~l~~L~~L~l~~~~l~~----~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~   76 (411)
                      .++.+|.. |.++.+|++|++++|.++.    +..+..+++|++|++++|.++.+|..+..+++|++|++++ +.+..++
T Consensus        39 ~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~-n~l~~~~  117 (306)
T 2z66_A           39 KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH-SNLKQMS  117 (306)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTT-SEEESST
T ss_pred             ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCC-Ccccccc
Confidence            35678865 7999999999999999875    4667789999999999999999998899999999999999 6788776


Q ss_pred             c-ccccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCc--CCcccccCCCCcEEEEEec
Q 038576           77 P-NVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKT--LPRDLSFFKMLQRYRILIG  153 (411)
Q Consensus        77 ~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~l~~~~~L~~L~i~~~  153 (411)
                      . ..+..+++|++|++++|.+..            ..+..+..+++|++|++++|....  +|..+..+++|++|+++.+
T Consensus       118 ~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n  185 (306)
T 2z66_A          118 EFSVFLSLRNLIYLDISHTHTRV------------AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC  185 (306)
T ss_dssp             TTTTTTTCTTCCEEECTTSCCEE------------CSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             cchhhhhccCCCEEECCCCcCCc------------cchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence            4 448899999999999998765            344678899999999999998654  6778888899999887644


Q ss_pred             CCccccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccc
Q 038576          154 DSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQ  233 (411)
Q Consensus       154 ~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~  233 (411)
                      .....+                                         ...+..+++|++|      ++.++. +..+...
T Consensus       186 ~l~~~~-----------------------------------------~~~~~~l~~L~~L------~L~~N~-l~~~~~~  217 (306)
T 2z66_A          186 QLEQLS-----------------------------------------PTAFNSLSSLQVL------NMSHNN-FFSLDTF  217 (306)
T ss_dssp             CCCEEC-----------------------------------------TTTTTTCTTCCEE------ECTTSC-CSBCCSG
T ss_pred             CcCCcC-----------------------------------------HHHhcCCCCCCEE------ECCCCc-cCccChh
Confidence            322110                                         0012245677777      777765 4444443


Q ss_pred             cccCCCCCcEEEecCCcCCccCCCCCCCCC-CcCeEeecCCCCC
Q 038576          234 ESSNAKDLEKLSIFMCDNLTHLVPSSTSFQ-NLTTLTVWGCHGM  276 (411)
Q Consensus       234 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~-~L~~L~l~~c~~l  276 (411)
                      ....+++|+.|+++++......+.....++ +|+.|++++|+..
T Consensus       218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            445678888888887543333332333353 7888888777543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.79  E-value=1e-18  Score=154.52  Aligned_cols=82  Identities=18%  Similarity=0.236  Sum_probs=38.1

Q ss_pred             cCcEEEecCCcCCC-C-ccccccccCcEEEeeCCc-cccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCccEEE
Q 038576           15 NLQTLSLDDCELGD-M-AIIGDLKKLVILALRGSD-MEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELY   90 (411)
Q Consensus        15 ~L~~L~l~~~~l~~-~-~~l~~l~~L~~L~L~~~~-l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~   90 (411)
                      +|++|++++|.++. + ..++++++|++|++++|+ ++.++. .++++++|++|++++|+.++.++...+..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            44555555554444 2 234444555555555543 444433 3444455555555443344444433344445555555


Q ss_pred             eccccc
Q 038576           91 IGQSPI   96 (411)
Q Consensus        91 l~~~~~   96 (411)
                      +++|.+
T Consensus       112 l~~n~l  117 (239)
T 2xwt_C          112 IFNTGL  117 (239)
T ss_dssp             EEEECC
T ss_pred             CCCCCC
Confidence            544443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.78  E-value=5.5e-20  Score=169.81  Aligned_cols=263  Identities=13%  Similarity=0.080  Sum_probs=165.4

Q ss_pred             CcEEEecCCcCCC-C-ccccccccCcEEEeeCCccccch-HHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEec
Q 038576           16 LQTLSLDDCELGD-M-AIIGDLKKLVILALRGSDMEELA-GEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIG   92 (411)
Q Consensus        16 L~~L~l~~~~l~~-~-~~l~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~   92 (411)
                      ++..+++++.+.. + ..+..+++|++|++++|.++.++ ..++++++|++|++++ +.+...+.  +..+++|++|+++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS-NVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTT-SCCEEEEE--ETTCTTCCEEECC
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCC-CcCCcchh--hhhcCCCCEEECc
Confidence            4455555555544 2 33445667888888888777554 5677888888888888 45665554  7788888888888


Q ss_pred             ccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCCccceeEEEe
Q 038576           93 QSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKL  172 (411)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~  172 (411)
                      +|.+..                 +...++|++|++++|.+..++..  .+++|++|+++.+.....+.            
T Consensus        89 ~n~l~~-----------------l~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~------------  137 (317)
T 3o53_A           89 NNYVQE-----------------LLVGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRD------------  137 (317)
T ss_dssp             SSEEEE-----------------EEECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGG------------
T ss_pred             CCcccc-----------------ccCCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccc------------
Confidence            876632                 22347788888887776665543  35667777665443321110            


Q ss_pred             cCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccc-cCCCCCcEEEecCCcC
Q 038576          173 TNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQES-SNAKDLEKLSIFMCDN  251 (411)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~-~~~~~L~~L~l~~c~~  251 (411)
                                                   ..+..+++|++|      +++++. +..+..... ..+++|++|+++++. 
T Consensus       138 -----------------------------~~~~~l~~L~~L------~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-  180 (317)
T 3o53_A          138 -----------------------------LDEGCRSRVQYL------DLKLNE-IDTVNFAELAASSDTLEHLNLQYNF-  180 (317)
T ss_dssp             -----------------------------BCTGGGSSEEEE------ECTTSC-CCEEEGGGGGGGTTTCCEEECTTSC-
T ss_pred             -----------------------------hhhhccCCCCEE------ECCCCC-CCcccHHHHhhccCcCCEEECCCCc-
Confidence                                         011245677777      777765 444333222 367888888888854 


Q ss_pred             CccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeee
Q 038576          252 LTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELN  331 (411)
Q Consensus       252 l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  331 (411)
                      +........ +++|+.|++++|. ++.+++.  +..+++|+.|+++++. ++.++...            ..+++|+.|+
T Consensus       181 l~~~~~~~~-l~~L~~L~Ls~N~-l~~l~~~--~~~l~~L~~L~L~~N~-l~~l~~~~------------~~l~~L~~L~  243 (317)
T 3o53_A          181 IYDVKGQVV-FAKLKTLDLSSNK-LAFMGPE--FQSAAGVTWISLRNNK-LVLIEKAL------------RFSQNLEHFD  243 (317)
T ss_dssp             CCEEECCCC-CTTCCEEECCSSC-CCEECGG--GGGGTTCSEEECTTSC-CCEECTTC------------CCCTTCCEEE
T ss_pred             Ccccccccc-cccCCEEECCCCc-CCcchhh--hcccCcccEEECcCCc-ccchhhHh------------hcCCCCCEEE
Confidence            444444433 8889999998874 5555432  5778999999999875 66665432            3478899999


Q ss_pred             cCCCcCCceeccCCCcccccCCCcceEeecCCCCCccc
Q 038576          332 LSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIF  369 (411)
Q Consensus       332 l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~  369 (411)
                      +++++-....  ..... ..+++|+.+++.+++.++..
T Consensus       244 l~~N~~~~~~--~~~~~-~~~~~L~~l~l~~~~~l~~~  278 (317)
T 3o53_A          244 LRGNGFHCGT--LRDFF-SKNQRVQTVAKQTVKKLTGQ  278 (317)
T ss_dssp             CTTCCCBHHH--HHHHH-HTCHHHHHHHHHHHHHHHSS
T ss_pred             ccCCCccCcC--HHHHH-hccccceEEECCCchhccCC
Confidence            9987533121  11111 34578888888877666543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.78  E-value=1.7e-20  Score=188.12  Aligned_cols=132  Identities=12%  Similarity=0.064  Sum_probs=85.9

Q ss_pred             ccccCcEEEecCCcCCC--Cccccc-cc-cCcEEEeeCCc-cc--cchHHhcCCCCCCEEecCCCCCccccCc----ccc
Q 038576           12 LLQNLQTLSLDDCELGD--MAIIGD-LK-KLVILALRGSD-ME--ELAGEIGQLTQLRLLNLSKCFELKVIPP----NVI   80 (411)
Q Consensus        12 ~l~~L~~L~l~~~~l~~--~~~l~~-l~-~L~~L~L~~~~-l~--~lp~~i~~l~~L~~L~L~~c~~~~~~~~----~~l   80 (411)
                      ++.+|++|++++|.+++  +..+.. ++ +|++|++++|. +.  .++..+.++++|++|++++| .+.+...    ...
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~  188 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES-SFSEKDGKWLHELA  188 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTC-EEECCCSHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccc-cccCcchhHHHHHH
Confidence            67778888888777665  455554 33 48888888774 33  34444557788888888885 3332211    124


Q ss_pred             cCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEe
Q 038576           81 SSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILI  152 (411)
Q Consensus        81 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~  152 (411)
                      ..+++|++|+++++.+..  +      ........+.++++|++|++.+|....++..+..+++|++|.+..
T Consensus       189 ~~~~~L~~L~L~~n~~~~--~------~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~  252 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAK--I------SPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS  252 (592)
T ss_dssp             HHCCCCCEEECTTCCCSS--C------CHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECB
T ss_pred             hcCCCccEEEeeccCCCc--c------CHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccc
Confidence            567788888887776641  0      001233445677888888888887777777777788888888763

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.77  E-value=4.8e-18  Score=153.60  Aligned_cols=138  Identities=17%  Similarity=0.218  Sum_probs=110.1

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPN   78 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~   78 (411)
                      .++++|..+.  .+|++|++++|.++.  +..+.++++|++|++++|.++.++. .++++++|++|++++ +.++.++..
T Consensus        18 ~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~   94 (276)
T 2z62_A           18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALG   94 (276)
T ss_dssp             CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT-CCCCEECTT
T ss_pred             CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC-CccCccChh
Confidence            4567787664  479999999999888  4478889999999999998887765 688899999999999 577777765


Q ss_pred             cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCc--CCcccccCCCCcEEEEEecC
Q 038576           79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKT--LPRDLSFFKMLQRYRILIGD  154 (411)
Q Consensus        79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~l~~~~~L~~L~i~~~~  154 (411)
                      .+.++++|++|++++|.+..            .....+.++++|++|++++|....  +|..+..+++|++|+++.+.
T Consensus        95 ~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~  160 (276)
T 2z62_A           95 AFSGLSSLQKLVAVETNLAS------------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  160 (276)
T ss_dssp             TTTTCTTCCEEECTTSCCCC------------STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             hhcCCccccEEECCCCCccc------------cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence            58899999999999988764            222457888999999999988665  57778888888888876443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.77  E-value=2.8e-19  Score=165.13  Aligned_cols=246  Identities=14%  Similarity=0.099  Sum_probs=164.0

Q ss_pred             hhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCcc
Q 038576           10 LGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLE   87 (411)
Q Consensus        10 l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~   87 (411)
                      +..+.+|++|++++|.++.  +..++++++|++|++++|.++..++ ++.+++|++|++++ +.++.++     ..++|+
T Consensus        30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~-n~l~~l~-----~~~~L~  102 (317)
T 3o53_A           30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN-NYVQELL-----VGPSIE  102 (317)
T ss_dssp             HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS-SEEEEEE-----ECTTCC
T ss_pred             hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC-Ccccccc-----CCCCcC
Confidence            4456799999999999988  4689999999999999999987665 89999999999999 5677655     348999


Q ss_pred             EEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc-ccccCCCCcEEEEEecCCccccCcCCccc
Q 038576           88 ELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRILIGDSREYDAWDGISR  166 (411)
Q Consensus        88 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~~~~~~~~~~~~~~~~  166 (411)
                      +|++++|.+..               .....+++|++|++++|....++. .+..+++|++|+++.+.....+..     
T Consensus       103 ~L~l~~n~l~~---------------~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----  162 (317)
T 3o53_A          103 TLHAANNNISR---------------VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA-----  162 (317)
T ss_dssp             EEECCSSCCSE---------------EEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG-----
T ss_pred             EEECCCCccCC---------------cCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH-----
Confidence            99999998865               222346889999999999877755 677789999998875443321100     


Q ss_pred             eeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEe
Q 038576          167 ISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSI  246 (411)
Q Consensus       167 l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l  246 (411)
                                                         .....+++|++|      +++++. ++.++.  ...+++|++|++
T Consensus       163 -----------------------------------~~~~~l~~L~~L------~L~~N~-l~~~~~--~~~l~~L~~L~L  198 (317)
T 3o53_A          163 -----------------------------------ELAASSDTLEHL------NLQYNF-IYDVKG--QVVFAKLKTLDL  198 (317)
T ss_dssp             -----------------------------------GGGGGTTTCCEE------ECTTSC-CCEEEC--CCCCTTCCEEEC
T ss_pred             -----------------------------------HHhhccCcCCEE------ECCCCc-Cccccc--ccccccCCEEEC
Confidence                                               001134566666      666655 444432  124677777777


Q ss_pred             cCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCC
Q 038576          247 FMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSE  326 (411)
Q Consensus       247 ~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~  326 (411)
                      +++ .+...++....+++|+.|++++|. ++.++.  .+..+++|+.|++++++-.......           ....+++
T Consensus       199 s~N-~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~--~~~~l~~L~~L~l~~N~~~~~~~~~-----------~~~~~~~  263 (317)
T 3o53_A          199 SSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEK--ALRFSQNLEHFDLRGNGFHCGTLRD-----------FFSKNQR  263 (317)
T ss_dssp             CSS-CCCEECGGGGGGTTCSEEECTTSC-CCEECT--TCCCCTTCCEEECTTCCCBHHHHHH-----------HHHTCHH
T ss_pred             CCC-cCCcchhhhcccCcccEEECcCCc-ccchhh--HhhcCCCCCEEEccCCCccCcCHHH-----------HHhcccc
Confidence            764 333443334346777777776663 444432  2456677777777776522111111           2223666


Q ss_pred             CCeeecCCCcCCcee
Q 038576          327 LKELNLSNLQSLTSF  341 (411)
Q Consensus       327 L~~L~l~~c~~l~~~  341 (411)
                      |+.|++.+++.++..
T Consensus       264 L~~l~l~~~~~l~~~  278 (317)
T 3o53_A          264 VQTVAKQTVKKLTGQ  278 (317)
T ss_dssp             HHHHHHHHHHHHHSS
T ss_pred             ceEEECCCchhccCC
Confidence            777776655555444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.77  E-value=1.8e-17  Score=150.58  Aligned_cols=219  Identities=14%  Similarity=0.130  Sum_probs=160.1

Q ss_pred             cEEEecCCcCCC-CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEeccc
Q 038576           17 QTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQS   94 (411)
Q Consensus        17 ~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~   94 (411)
                      ++++.+++.++. |..+  .++|++|+++++.++.++. .++++++|++|++++ +.++.++...++.+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHS-NVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCC-CccceeCHhhcCCccCCCEEeCCCC
Confidence            678898888888 6544  4699999999999997774 589999999999999 5788885555999999999999999


Q ss_pred             c-cccCccccccccccccchhhccCCCCCCEEEEeeccCCcC-CcccccCCCCcEEEEEecCCccccCcCCccceeEEEe
Q 038576           95 P-IQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTL-PRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKL  172 (411)
Q Consensus        95 ~-~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~  172 (411)
                      . +..            ..+..+..+++|++|++++|....+ +..+..+++|++|++..+.....+.            
T Consensus        91 ~~l~~------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------  146 (285)
T 1ozn_A           91 AQLRS------------VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD------------  146 (285)
T ss_dssp             TTCCC------------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------------
T ss_pred             CCccc------------cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH------------
Confidence            7 543            2347788999999999999987776 4557788999999886444331110            


Q ss_pred             cCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCC
Q 038576          173 TNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNL  252 (411)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l  252 (411)
                                                   ..+..+++|++|      ++.++. ++.++...+..+++|++|+++++...
T Consensus       147 -----------------------------~~~~~l~~L~~L------~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~  190 (285)
T 1ozn_A          147 -----------------------------DTFRDLGNLTHL------FLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVA  190 (285)
T ss_dssp             -----------------------------TTTTTCTTCCEE------ECCSSC-CCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             -----------------------------hHhccCCCccEE------ECCCCc-ccccCHHHhcCccccCEEECCCCccc
Confidence                                         012356778888      887764 55555545567788888888875433


Q ss_pred             ccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccc
Q 038576          253 THLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCV  300 (411)
Q Consensus       253 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  300 (411)
                      ...+.....+++|+.|++++|. ++.++ ...+..+++|+.|++++++
T Consensus       191 ~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          191 HVHPHAFRDLGRLMTLYLFANN-LSALP-TEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             EECTTTTTTCTTCCEEECCSSC-CSCCC-HHHHTTCTTCCEEECCSSC
T ss_pred             ccCHhHccCcccccEeeCCCCc-CCcCC-HHHcccCcccCEEeccCCC
Confidence            3223334447888888888774 44443 3346778888888888775

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.77  E-value=2.7e-19  Score=179.39  Aligned_cols=79  Identities=25%  Similarity=0.392  Sum_probs=41.8

Q ss_pred             CcEEEecCCc-CCC---CccccccccCcEEEeeCCcccc-----chHHhcCCCCCCEEecCCCCCcc-----ccCccccc
Q 038576           16 LQTLSLDDCE-LGD---MAIIGDLKKLVILALRGSDMEE-----LAGEIGQLTQLRLLNLSKCFELK-----VIPPNVIS   81 (411)
Q Consensus        16 L~~L~l~~~~-l~~---~~~l~~l~~L~~L~L~~~~l~~-----lp~~i~~l~~L~~L~L~~c~~~~-----~~~~~~l~   81 (411)
                      |++|++++|. +..   +....++++|++|++++|.+++     ++....++++|++|+++++ .+.     .++. .+.
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~~~l~~-~~~  217 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT-EFAKISPKDLET-IAR  217 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTC-CCSSCCHHHHHH-HHH
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeecc-CCCccCHHHHHH-HHh
Confidence            6666666665 222   2223356666666666665541     3334455666666666663 332     2222 134


Q ss_pred             CCCCccEEEeccccc
Q 038576           82 SLSRLEELYIGQSPI   96 (411)
Q Consensus        82 ~L~~L~~L~l~~~~~   96 (411)
                      .+++|++|++++|.+
T Consensus       218 ~~~~L~~L~L~~~~~  232 (592)
T 3ogk_B          218 NCRSLVSVKVGDFEI  232 (592)
T ss_dssp             HCTTCCEEECSSCBG
T ss_pred             hCCCCcEEeccCccH
Confidence            566666666666544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.76  E-value=1.4e-17  Score=147.21  Aligned_cols=106  Identities=16%  Similarity=0.233  Sum_probs=76.9

Q ss_pred             cCCC-CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecc-cccccCcc
Q 038576           25 ELGD-MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQ-SPIQWGKV  101 (411)
Q Consensus        25 ~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~-~~~~~~~~  101 (411)
                      .++. |. +.  .+|++|++++|.++.+|. .++++++|++|++++|..++.++...+.++++|++|++++ |.+..   
T Consensus        22 ~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~---   95 (239)
T 2xwt_C           22 DIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY---   95 (239)
T ss_dssp             SCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE---
T ss_pred             CccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE---
Confidence            3666 54 43  388889999888887776 5788888999999885448888775588888888888887 66653   


Q ss_pred             ccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCc
Q 038576          102 EGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQ  146 (411)
Q Consensus       102 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~  146 (411)
                               .....+.++++|++|++++|....+|. +..+++|+
T Consensus        96 ---------i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~  130 (239)
T 2xwt_C           96 ---------IDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTD  130 (239)
T ss_dssp             ---------ECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCC
T ss_pred             ---------cCHHHhCCCCCCCEEeCCCCCCccccc-cccccccc
Confidence                     223567778888888888887766665 44555554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.75  E-value=1.2e-17  Score=163.19  Aligned_cols=83  Identities=13%  Similarity=0.100  Sum_probs=50.7

Q ss_pred             CCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCc
Q 038576          237 NAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNY  316 (411)
Q Consensus       237 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  316 (411)
                      .+++|+.|+++++. +.+.++... +++|+.|++++|. ++.+++.  +..+++|+.|+++++. +..++...       
T Consensus       167 ~l~~L~~L~Ls~N~-l~~~~~~~~-l~~L~~L~Ls~N~-l~~~~~~--~~~l~~L~~L~Ls~N~-l~~lp~~l-------  233 (487)
T 3oja_A          167 SSDTLEHLNLQYNF-IYDVKGQVV-FAKLKTLDLSSNK-LAFMGPE--FQSAAGVTWISLRNNK-LVLIEKAL-------  233 (487)
T ss_dssp             GTTTCCEEECTTSC-CCEEECCCC-CTTCCEEECCSSC-CCEECGG--GGGGTTCSEEECTTSC-CCEECTTC-------
T ss_pred             hCCcccEEecCCCc-ccccccccc-CCCCCEEECCCCC-CCCCCHh--HcCCCCccEEEecCCc-Ccccchhh-------
Confidence            56677777777643 444433333 7777777777664 4444332  4667777888777765 55554322       


Q ss_pred             cCccccccCCCCeeecCCCcC
Q 038576          317 AAQDEIVFSELKELNLSNLQS  337 (411)
Q Consensus       317 ~~~~~~~~~~L~~L~l~~c~~  337 (411)
                           ..+++|+.|++++++-
T Consensus       234 -----~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          234 -----RFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             -----CCCTTCCEEECTTCCB
T ss_pred             -----ccCCCCCEEEcCCCCC
Confidence                 2367777777777653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.75  E-value=3.3e-20  Score=180.37  Aligned_cols=135  Identities=22%  Similarity=0.290  Sum_probs=78.8

Q ss_pred             hhccccCcEEEecCCcCCC------CccccccccCcEEEeeCCcccc-chHH-hcCCC----CCCEEecCCCCCcc----
Q 038576           10 LGLLQNLQTLSLDDCELGD------MAIIGDLKKLVILALRGSDMEE-LAGE-IGQLT----QLRLLNLSKCFELK----   73 (411)
Q Consensus        10 l~~l~~L~~L~l~~~~l~~------~~~l~~l~~L~~L~L~~~~l~~-lp~~-i~~l~----~L~~L~L~~c~~~~----   73 (411)
                      +..+++|++|++++|.+++      +..+..+++|++|++++|.+.+ .+.. ...++    +|++|++++| .++    
T Consensus        24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~  102 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGC  102 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGH
T ss_pred             HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHH
Confidence            5667777777777777663      3445566777777777777663 2222 23344    5777777774 444    


Q ss_pred             -ccCcccccCCCCccEEEecccccccCccccccccccccchhh-ccCCCCCCEEEEeeccCCc-----CCcccccCCCCc
Q 038576           74 -VIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDE-LNNLSKLTSLEILIQDEKT-----LPRDLSFFKMLQ  146 (411)
Q Consensus        74 -~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~-----~~~~l~~~~~L~  146 (411)
                       .++.. +.++++|++|++++|.+.. ..+       ...... ....++|++|++++|....     ++..+..+++|+
T Consensus       103 ~~l~~~-l~~~~~L~~L~Ls~n~i~~-~~~-------~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  173 (461)
T 1z7x_W          103 GVLSST-LRTLPTLQELHLSDNLLGD-AGL-------QLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK  173 (461)
T ss_dssp             HHHHHH-TTSCTTCCEEECCSSBCHH-HHH-------HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHH-HccCCceeEEECCCCcCch-HHH-------HHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCC
Confidence             23433 6677777777777776543 000       001111 1224567777777776443     234455667777


Q ss_pred             EEEEEecC
Q 038576          147 RYRILIGD  154 (411)
Q Consensus       147 ~L~i~~~~  154 (411)
                      +|+++.+.
T Consensus       174 ~L~L~~n~  181 (461)
T 1z7x_W          174 ELTVSNND  181 (461)
T ss_dssp             EEECCSSB
T ss_pred             EEECcCCC
Confidence            77776544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.74  E-value=1.9e-17  Score=151.99  Aligned_cols=196  Identities=21%  Similarity=0.236  Sum_probs=132.7

Q ss_pred             hhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEE
Q 038576           10 LGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEEL   89 (411)
Q Consensus        10 l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L   89 (411)
                      +.++.+|++|++++|.++..+.+..+++|++|++++|.++.++. ++++++|++|++++ +.++.++.  +..+++|++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~-n~l~~~~~--~~~l~~L~~L  112 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSG-NPLKNVSA--IAGLQSIKTL  112 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCS-CCCSCCGG--GTTCTTCCEE
T ss_pred             HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccC-CcCCCchh--hcCCCCCCEE
Confidence            45677888888888888774467788888888888888887776 88888888888888 45777653  7888888888


Q ss_pred             EecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCCccceeE
Q 038576           90 YIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISK  169 (411)
Q Consensus        90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~  169 (411)
                      ++++|.+..              ...+..+++|++|++++|....++. +..+++|+.|+++                  
T Consensus       113 ~l~~n~l~~--------------~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~------------------  159 (308)
T 1h6u_A          113 DLTSTQITD--------------VTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIG------------------  159 (308)
T ss_dssp             ECTTSCCCC--------------CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECC------------------
T ss_pred             ECCCCCCCC--------------chhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEcc------------------
Confidence            888887643              1237777888888888777666554 5555666666554                  


Q ss_pred             EEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCC
Q 038576          170 LKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMC  249 (411)
Q Consensus       170 L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c  249 (411)
                                                                           ++. +..+..  ...+++|++|+++++
T Consensus       160 -----------------------------------------------------~n~-l~~~~~--l~~l~~L~~L~l~~n  183 (308)
T 1h6u_A          160 -----------------------------------------------------NAQ-VSDLTP--LANLSKLTTLKADDN  183 (308)
T ss_dssp             -----------------------------------------------------SSC-CCCCGG--GTTCTTCCEEECCSS
T ss_pred             -----------------------------------------------------CCc-CCCChh--hcCCCCCCEEECCCC
Confidence                                                                 321 222222  235666777777764


Q ss_pred             cCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEccccccccc
Q 038576          250 DNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEI  305 (411)
Q Consensus       250 ~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  305 (411)
                       .+.+..+.. .+++|+.|++++|. ++++++   +..+++|+.|++++++ +...
T Consensus       184 -~l~~~~~l~-~l~~L~~L~L~~N~-l~~~~~---l~~l~~L~~L~l~~N~-i~~~  232 (308)
T 1h6u_A          184 -KISDISPLA-SLPNLIEVHLKNNQ-ISDVSP---LANTSNLFIVTLTNQT-ITNQ  232 (308)
T ss_dssp             -CCCCCGGGG-GCTTCCEEECTTSC-CCBCGG---GTTCTTCCEEEEEEEE-EECC
T ss_pred             -ccCcChhhc-CCCCCCEEEccCCc-cCcccc---ccCCCCCCEEEccCCe-eecC
Confidence             333433333 37788888887764 444432   5778888888888876 4443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.74  E-value=3.2e-17  Score=147.70  Aligned_cols=197  Identities=18%  Similarity=0.260  Sum_probs=138.2

Q ss_pred             cCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEec
Q 038576           15 NLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIG   92 (411)
Q Consensus        15 ~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~   92 (411)
                      +.++++++++.++. |..+.  .++++|++++|.++.+|. .++++++|++|++++ +.++.++..++..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCS-SCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCC-CccCeeChhhhcCCCCCCEEECC
Confidence            46788888888777 65554  578888888888887765 577888888888888 57777777656788888888888


Q ss_pred             ccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc-cccCCCCcEEEEEecCCccccCcCCccceeEEE
Q 038576           93 QSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRILIGDSREYDAWDGISRISKLK  171 (411)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~  171 (411)
                      +|.+..            .....+..+++|++|++++|....++.. +..+++|++|+++.+....++..          
T Consensus        94 ~n~l~~------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----------  151 (270)
T 2o6q_A           94 DNKLQA------------LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG----------  151 (270)
T ss_dssp             SSCCCC------------CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----------
T ss_pred             CCcCCc------------CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh----------
Confidence            887754            2235567788888888888887666653 56788888888764443321110          


Q ss_pred             ecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcC
Q 038576          172 LTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDN  251 (411)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~  251 (411)
                                                     .+..+++|++|      .+.++. +..++...+..+++|++|+++++ .
T Consensus       152 -------------------------------~~~~l~~L~~L------~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~  192 (270)
T 2o6q_A          152 -------------------------------VFDKLTSLKEL------RLYNNQ-LKRVPEGAFDKLTELKTLKLDNN-Q  192 (270)
T ss_dssp             -------------------------------TTTTCTTCCEE------ECCSSC-CSCCCTTTTTTCTTCCEEECCSS-C
T ss_pred             -------------------------------HccCCccccee------EecCCc-CcEeChhHhccCCCcCEEECCCC-c
Confidence                                           12245677777      777764 55555545567889999999885 4


Q ss_pred             CccCCC-CCCCCCCcCeEeecCCCC
Q 038576          252 LTHLVP-SSTSFQNLTTLTVWGCHG  275 (411)
Q Consensus       252 l~~~~~-~~~~~~~L~~L~l~~c~~  275 (411)
                      +...++ ....+++|+.|++++|+-
T Consensus       193 l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          193 LKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCcCCHHHhccccCCCEEEecCCCe
Confidence            444443 234488999999988763

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.74  E-value=1.1e-16  Score=149.86  Aligned_cols=113  Identities=18%  Similarity=0.237  Sum_probs=73.7

Q ss_pred             hhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCcc
Q 038576           10 LGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLE   87 (411)
Q Consensus        10 l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~   87 (411)
                      +..|.. ++++-++++++. |..+  ..++++|++++|+|+.+|. .++++++|++|++++|...+.+|.+++.++++++
T Consensus         6 ~C~C~~-~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~   82 (350)
T 4ay9_X            6 ICHCSN-RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH   82 (350)
T ss_dssp             SSEEET-TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCC
T ss_pred             ccEeeC-CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhh
Confidence            344543 566777777777 6555  2577788888888777775 3677888888888875445666666577777766


Q ss_pred             E-EEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc
Q 038576           88 E-LYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR  137 (411)
Q Consensus        88 ~-L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  137 (411)
                      + +.+..|.+..            ..+..+..+++|+++++++|.+..++.
T Consensus        83 ~~l~~~~N~l~~------------l~~~~f~~l~~L~~L~l~~n~l~~~~~  121 (350)
T 4ay9_X           83 EIRIEKANNLLY------------INPEAFQNLPNLQYLLISNTGIKHLPD  121 (350)
T ss_dssp             EEEEEEETTCCE------------ECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred             hhhcccCCcccc------------cCchhhhhccccccccccccccccCCc
Confidence            5 3444555543            223566777777777777777665554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.73  E-value=4.9e-17  Score=146.60  Aligned_cols=127  Identities=21%  Similarity=0.362  Sum_probs=81.8

Q ss_pred             hhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEE
Q 038576           10 LGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEEL   89 (411)
Q Consensus        10 l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L   89 (411)
                      +.++.+|+.|+++++.++.++.++.+++|++|++++|.++.++ .++++++|++|++++ +.++.++...++.+++|++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTG-NQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEE
T ss_pred             cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCC-CccCccChhHhcCCcCCCEE
Confidence            4566677777777777766556677777777777777776654 566777777777777 46666665556677777777


Q ss_pred             EecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc-cccCCCCcEEEE
Q 038576           90 YIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRI  150 (411)
Q Consensus        90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~i  150 (411)
                      ++++|.+..            .....+.++++|++|++++|....++.. +..+++|+.|++
T Consensus       115 ~L~~n~l~~------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  164 (272)
T 3rfs_A          115 VLVENQLQS------------LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL  164 (272)
T ss_dssp             ECTTSCCCC------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ECCCCcCCc------------cCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence            777776653            2224456666777777776665555443 244455555444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.72  E-value=8.9e-17  Score=150.38  Aligned_cols=229  Identities=16%  Similarity=0.141  Sum_probs=165.3

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC-C-ccccccccCcEEEeeCCccc-cchH-HhcCCCCCCEEecCCCCCccccCc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD-M-AIIGDLKKLVILALRGSDME-ELAG-EIGQLTQLRLLNLSKCFELKVIPP   77 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~-~-~~l~~l~~L~~L~L~~~~l~-~lp~-~i~~l~~L~~L~L~~c~~~~~~~~   77 (411)
                      +++++|..+.  .++++|+|++|.++. + ..|.++++|++|+|++|.+. .+|. .+.++++|+++...+++.++.++.
T Consensus        20 ~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~   97 (350)
T 4ay9_X           20 KVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP   97 (350)
T ss_dssp             TCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred             CCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc
Confidence            4788998773  689999999999998 5 56899999999999999875 5664 478899988876666589999987


Q ss_pred             ccccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeec-cCCcCCcc-cccC-CCCcEEEEEecC
Q 038576           78 NVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQ-DEKTLPRD-LSFF-KMLQRYRILIGD  154 (411)
Q Consensus        78 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~-l~~~-~~L~~L~i~~~~  154 (411)
                      ++++.+++|++|++++|.+..            .....+....++..+++..+ ....++.. +..+ ..++.|++..+.
T Consensus        98 ~~f~~l~~L~~L~l~~n~l~~------------~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~  165 (350)
T 4ay9_X           98 EAFQNLPNLQYLLISNTGIKH------------LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG  165 (350)
T ss_dssp             TSBCCCTTCCEEEEEEECCSS------------CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred             hhhhhcccccccccccccccc------------CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence            779999999999999998864            12234445566778888664 35555543 2333 356666665443


Q ss_pred             CccccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhcccccccccccccccc
Q 038576          155 SREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQE  234 (411)
Q Consensus       155 ~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~  234 (411)
                      ...++...+                                          ...+|++|      .+.++..++.++...
T Consensus       166 i~~i~~~~f------------------------------------------~~~~L~~l------~l~~~n~l~~i~~~~  197 (350)
T 4ay9_X          166 IQEIHNSAF------------------------------------------NGTQLDEL------NLSDNNNLEELPNDV  197 (350)
T ss_dssp             CCEECTTSS------------------------------------------TTEEEEEE------ECTTCTTCCCCCTTT
T ss_pred             ccCCChhhc------------------------------------------cccchhHH------hhccCCcccCCCHHH
Confidence            332221111                                          23467777      777777777777766


Q ss_pred             ccCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcc
Q 038576          235 SSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKV  298 (411)
Q Consensus       235 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~  298 (411)
                      +..+++|+.|+++++ .++.+++. . +.+|++|.+.++..++.++.   +..+++|+.+++.+
T Consensus       198 f~~l~~L~~LdLs~N-~l~~lp~~-~-~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          198 FHGASGPVILDISRT-RIHSLPSY-G-LENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY  255 (350)
T ss_dssp             TTTEECCSEEECTTS-CCCCCCSS-S-CTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred             hccCcccchhhcCCC-CcCccChh-h-hccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence            677888888888874 56555443 2 78888888888888888754   47788888888864

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.72  E-value=5.8e-19  Score=177.09  Aligned_cols=61  Identities=13%  Similarity=0.135  Sum_probs=33.4

Q ss_pred             cCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCcc--ccCCCCCCCCceEEEEecccc
Q 038576          324 FSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKI--FSEGELSTPKLQKVQMSLVDE  389 (411)
Q Consensus       324 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~--~p~~~~~~~~L~~l~l~~~c~  389 (411)
                      +++|+.|++++|. +++.  .....+..+++|++|++++|+- ..  +......+++|++|+++ +|+
T Consensus       455 ~~~L~~L~L~~~~-i~~~--~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~-~~~  517 (594)
T 2p1m_B          455 AKKMEMLSVAFAG-DSDL--GMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMS-SCS  517 (594)
T ss_dssp             CTTCCEEEEESCC-SSHH--HHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEE-SSC
T ss_pred             chhccEeeccCCC-CcHH--HHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeee-CCC
Confidence            5566666666654 3221  0001112368888888888764 32  11122346788888886 554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.72  E-value=1.8e-16  Score=142.67  Aligned_cols=198  Identities=15%  Similarity=0.224  Sum_probs=119.9

Q ss_pred             cCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccccccCccccccccccccchhhc
Q 038576           37 KLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDEL  116 (411)
Q Consensus        37 ~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l  116 (411)
                      +.++++++++.++.+|..+.  +++++|++++ +.+..++...++++++|++|++++|.+..            .....+
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------i~~~~~   81 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQS-NKLSSLPSKAFHRLTKLRLLYLNDNKLQT------------LPAGIF   81 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--TTCSEEECCS-SCCSCCCTTSSSSCTTCCEEECCSSCCSC------------CCTTTT
T ss_pred             CCCEEEccCCCCCccCCCCC--CCCCEEECcC-CCCCeeCHHHhcCCCCCCEEECCCCccCe------------eChhhh
Confidence            56777777777777765443  5677777777 46666665457777777777777776653            122445


Q ss_pred             cCCCCCCEEEEeeccCCcCCcc-cccCCCCcEEEEEecCCccccCcCCccceeEEEecCCcccccccccccccccchhcc
Q 038576          117 NNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLT  195 (411)
Q Consensus       117 ~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~  195 (411)
                      .++++|++|++++|....++.. +..+++|++|++..+.....+.                                   
T Consensus        82 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------------------  126 (270)
T 2o6q_A           82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP-----------------------------------  126 (270)
T ss_dssp             SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT-----------------------------------
T ss_pred             cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH-----------------------------------
Confidence            6677777777777776666543 4567777777765333221110                                   


Q ss_pred             cCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCCccCCC-CCCCCCCcCeEeecCCC
Q 038576          196 SGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVP-SSTSFQNLTTLTVWGCH  274 (411)
Q Consensus       196 ~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~  274 (411)
                            ..+..+++|++|      ++.++. ++.++...+..+++|++|+++++. +...++ ....+++|+.|++++| 
T Consensus       127 ------~~~~~l~~L~~L------~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-  191 (270)
T 2o6q_A          127 ------RVFDSLTKLTYL------SLGYNE-LQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNN-  191 (270)
T ss_dssp             ------TTTTTCTTCCEE------ECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS-
T ss_pred             ------HHhCcCcCCCEE------ECCCCc-CCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCC-
Confidence                  012245667777      776654 455554444566777777777643 333332 2333677777777766 


Q ss_pred             CCccccchHhhhccccccEEeEcccc
Q 038576          275 GMINVLTSSTARSLVRLRQMTIKVCV  300 (411)
Q Consensus       275 ~l~~~~~~~~~~~l~~L~~L~l~~c~  300 (411)
                      .++.+++ ..+..+++|+.|++.+++
T Consensus       192 ~l~~~~~-~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          192 QLKRVPE-GAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred             cCCcCCH-HHhccccCCCEEEecCCC
Confidence            3444433 234567777777777654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.70  E-value=6e-18  Score=155.77  Aligned_cols=125  Identities=18%  Similarity=0.200  Sum_probs=77.9

Q ss_pred             hhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccc--cchHHhc-------CCCCCCEEecCCCCCcc-ccCcc
Q 038576           10 LGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDME--ELAGEIG-------QLTQLRLLNLSKCFELK-VIPPN   78 (411)
Q Consensus        10 l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~--~lp~~i~-------~l~~L~~L~L~~c~~~~-~~~~~   78 (411)
                      ++...+|++|++++|.+ . |..+...  |++|+++++.+.  .+|..+.       ++++|++|++++| .+. .+|..
T Consensus        39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~  114 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL-EVTGTAPPP  114 (312)
T ss_dssp             EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEE-BCBSCCCCC
T ss_pred             EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCC-cccchhHHH
Confidence            34556677777777777 4 5555443  777777777664  4555444       6777777777774 444 45554


Q ss_pred             cc-cCCCCccEEEecccccccCccccccccccccchhhccCC-----CCCCEEEEeeccCCcCC-cccccCCCCcEEEEE
Q 038576           79 VI-SSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNL-----SKLTSLEILIQDEKTLP-RDLSFFKMLQRYRIL  151 (411)
Q Consensus        79 ~l-~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~i~  151 (411)
                      ++ +.+++|++|++++|.+..            . +..+..+     ++|++|++++|.+..++ ..++.+++|++|+++
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~------------~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  181 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWAT------------R-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS  181 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSS------------S-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECC
T ss_pred             HHHhcCCCccEEEccCCCCcc------------h-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECC
Confidence            21 677777777777776654            1 2333333     67777777777766555 456666677766665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.70  E-value=2.3e-16  Score=153.94  Aligned_cols=57  Identities=28%  Similarity=0.403  Sum_probs=29.1

Q ss_pred             cCcEEEeeCCccccch-HHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEeccccc
Q 038576           37 KLVILALRGSDMEELA-GEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPI   96 (411)
Q Consensus        37 ~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~   96 (411)
                      +|++|++++|.++.++ ..++++++|++|++++ +.+...++  ++.+++|++|++++|.+
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~--l~~l~~L~~L~Ls~N~l   92 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSS-NVLYETLD--LESLSTLRTLDLNNNYV   92 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTT-SCCEEEEE--CTTCTTCCEEECCSSEE
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeC-CCCCCCcc--cccCCCCCEEEecCCcC
Confidence            5555555555555432 3455555555555555 33443332  45555555555555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.70  E-value=2.7e-17  Score=151.34  Aligned_cols=227  Identities=16%  Similarity=0.131  Sum_probs=140.4

Q ss_pred             CChhhhccccCcEEEecCCcCCC---Ccccc-------ccccCcEEEeeCCccc-cchHHh--cCCCCCCEEecCCCCCc
Q 038576            6 LPSSLGLLQNLQTLSLDDCELGD---MAIIG-------DLKKLVILALRGSDME-ELAGEI--GQLTQLRLLNLSKCFEL   72 (411)
Q Consensus         6 lp~~l~~l~~L~~L~l~~~~l~~---~~~l~-------~l~~L~~L~L~~~~l~-~lp~~i--~~l~~L~~L~L~~c~~~   72 (411)
                      +|..+...  |++|++++|.++.   +..+.       ++++|++|++++|.++ .+|..+  +.+++|++|++++ +.+
T Consensus        57 ~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~-N~l  133 (312)
T 1wwl_A           57 DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN-VSW  133 (312)
T ss_dssp             CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEES-CBC
T ss_pred             cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccC-CCC
Confidence            46665554  7777777777643   33333       5777777777777776 566654  6777777777777 456


Q ss_pred             cccCcccccCC-----CCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCc---CCccc--ccC
Q 038576           73 KVIPPNVISSL-----SRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKT---LPRDL--SFF  142 (411)
Q Consensus        73 ~~~~~~~l~~L-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---~~~~l--~~~  142 (411)
                      ..+|.. ++.+     ++|++|++++|.+..            ..+..+.++++|++|++++|....   ++..+  ..+
T Consensus       134 ~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l  200 (312)
T 1wwl_A          134 ATRDAW-LAELQQWLKPGLKVLSIAQAHSLN------------FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF  200 (312)
T ss_dssp             SSSSSH-HHHHHTTCCTTCCEEEEESCSCCC------------CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred             cchhHH-HHHHHHhhcCCCcEEEeeCCCCcc------------chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence            665543 5555     777777777777654            333667777777777777776332   23333  567


Q ss_pred             CCCcEEEEEecCCccccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhcccc
Q 038576          143 KMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGIN  222 (411)
Q Consensus       143 ~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~  222 (411)
                      ++|++|++..+.....+..                              .        ......+++|++|      +++
T Consensus       201 ~~L~~L~L~~N~l~~~~~~------------------------------~--------~~~~~~l~~L~~L------~Ls  236 (312)
T 1wwl_A          201 PTLQVLALRNAGMETPSGV------------------------------C--------SALAAARVQLQGL------DLS  236 (312)
T ss_dssp             TTCCEEECTTSCCCCHHHH------------------------------H--------HHHHHTTCCCSEE------ECT
T ss_pred             CCCCEEECCCCcCcchHHH------------------------------H--------HHHHhcCCCCCEE------ECC
Confidence            7777777754332210000                              0        0001234677777      777


Q ss_pred             ccccccccc-cccccCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccc
Q 038576          223 HRRELKQIF-KQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCV  300 (411)
Q Consensus       223 ~~~~l~~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  300 (411)
                      ++. +.... ......+++|++|+++++. ++..+...  +++|+.|++++|. ++.++.   ...+++|++|++++++
T Consensus       237 ~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~--~~~L~~L~Ls~N~-l~~~p~---~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          237 HNS-LRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGL--PAKLSVLDLSYNR-LDRNPS---PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             TSC-CCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSC--CSEEEEEECCSSC-CCSCCC---TTTSCEEEEEECTTCT
T ss_pred             CCc-CCcccchhhhhhcCCCCEEECCCCc-cChhhhhc--cCCceEEECCCCC-CCCChh---HhhCCCCCEEeccCCC
Confidence            765 33322 2233456888999998853 44443332  3789999998874 555532   5778999999998865

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.69  E-value=4.8e-18  Score=158.03  Aligned_cols=38  Identities=18%  Similarity=0.166  Sum_probs=17.2

Q ss_pred             CCCcCeEeecCCCCCccccchHhhhccccccEEeEcccc
Q 038576          262 FQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCV  300 (411)
Q Consensus       262 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  300 (411)
                      +++|+.|++++|..+++... ..+..+++|++|++++|.
T Consensus       221 ~~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          221 CPNLVHLDLSDSVMLKNDCF-QEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             CTTCSEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTCT
T ss_pred             CCCCCEEeCCCCCcCCHHHH-HHHhCCCCCCEeeCCCCC
Confidence            45555555555543333211 123444555555555553

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.69  E-value=1.5e-17  Score=154.78  Aligned_cols=79  Identities=20%  Similarity=0.175  Sum_probs=39.3

Q ss_pred             ccCcEEEecCCcCCC-CccccccccCcEEEeeCCccc--cchHHhcCCCCCCEEecCCCCCcc-ccCcccccCCCCccEE
Q 038576           14 QNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDME--ELAGEIGQLTQLRLLNLSKCFELK-VIPPNVISSLSRLEEL   89 (411)
Q Consensus        14 ~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~L~~c~~~~-~~~~~~l~~L~~L~~L   89 (411)
                      .++++|+++++.+.. +..+..+++|++|++++|.++  .+|..+.++++|++|++++|. +. ..+.. ++++++|++|
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~-l~~~~~L~~L  147 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNT-LAKNSNLVRL  147 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHH-HTTCTTCSEE
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHHH-HhcCCCCCEE
Confidence            455555555555444 333444555555555555544  144445555555555555532 32 22222 4455555555


Q ss_pred             Eeccc
Q 038576           90 YIGQS   94 (411)
Q Consensus        90 ~l~~~   94 (411)
                      ++++|
T Consensus       148 ~L~~~  152 (336)
T 2ast_B          148 NLSGC  152 (336)
T ss_dssp             ECTTC
T ss_pred             ECCCC
Confidence            55555

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.68  E-value=1.3e-18  Score=174.54  Aligned_cols=132  Identities=12%  Similarity=0.081  Sum_probs=76.1

Q ss_pred             CCCCCcEEEec-----CCcCCccCCC------CCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEccccccccc
Q 038576          237 NAKDLEKLSIF-----MCDNLTHLVP------SSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEI  305 (411)
Q Consensus       237 ~~~~L~~L~l~-----~c~~l~~~~~------~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  305 (411)
                      .+++|++|+++     +|+.++..+.      ....+++|+.|++++  .+++.........+++|+.|++++|. +...
T Consensus       395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~  471 (594)
T 2p1m_B          395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDL  471 (594)
T ss_dssp             HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHH
T ss_pred             hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHH
Confidence            57888888888     4555553221      122377888888865  45544333333447888888888876 3222


Q ss_pred             ccccCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCC-CCCCCceEEEE
Q 038576          306 VADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGE-LSTPKLQKVQM  384 (411)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~-~~~~~L~~l~l  384 (411)
                      ....          -...+++|++|++++|+. ++.  .....+..+++|++|++++|+.-..-...+ ..+|+|+...+
T Consensus       472 ~~~~----------l~~~~~~L~~L~L~~n~~-~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~  538 (594)
T 2p1m_B          472 GMHH----------VLSGCDSLRKLEIRDCPF-GDK--ALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVI  538 (594)
T ss_dssp             HHHH----------HHHHCTTCCEEEEESCSC-CHH--HHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEE
T ss_pred             HHHH----------HHhcCCCcCEEECcCCCC-cHH--HHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEe
Confidence            1110          012478999999999874 332  111111346899999999987522111111 24577765555

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.68  E-value=1.5e-18  Score=168.72  Aligned_cols=344  Identities=16%  Similarity=0.144  Sum_probs=181.2

Q ss_pred             ccCcEEEecCCcCCC--C-ccccccccCcEEEeeCCccc-----cchHHhcCCCCCCEEecCCCCCcccc-CcccccCCC
Q 038576           14 QNLQTLSLDDCELGD--M-AIIGDLKKLVILALRGSDME-----ELAGEIGQLTQLRLLNLSKCFELKVI-PPNVISSLS   84 (411)
Q Consensus        14 ~~L~~L~l~~~~l~~--~-~~l~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~L~~c~~~~~~-~~~~l~~L~   84 (411)
                      ++|++|+++++.+++  . ..+..+++|++|++++|.++     .++..+..+++|++|++++| .+.+. +..+...++
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTC
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHh
Confidence            467888888888776  2 33677888888888888776     45667778888888888884 45443 222233454


Q ss_pred             ----CccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcC-Cccc-----ccCCCCcEEEEEecC
Q 038576           85 ----RLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTL-PRDL-----SFFKMLQRYRILIGD  154 (411)
Q Consensus        85 ----~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l-----~~~~~L~~L~i~~~~  154 (411)
                          +|++|++++|.+....        ....+..+.++++|++|++++|..... +..+     ...++|++|++..+.
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~--------~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  153 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAG--------CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS  153 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGG--------HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             hCCCceeEEEccCCCCCHHH--------HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC
Confidence                6888888888765300        012356777888888888888764321 1111     224578888887554


Q ss_pred             Ccccc-----C-cCCccceeEEEecCCccccccccccc-----ccccchhcccC---CCc------cccccccchhhhch
Q 038576          155 SREYD-----A-WDGISRISKLKLTNGANICLNEGHIM-----QLKRIEDLTSG---GDS------EALYTSFKNVENGM  214 (411)
Q Consensus       155 ~~~~~-----~-~~~~~~l~~L~~~~~~~~~~~~~~~~-----~~~~l~~~~~~---~~~------~~~~~~~~~L~~L~  214 (411)
                      .....     . +....+++.|++.++.........+.     ....++.+...   +..      ...+..+++|++| 
T Consensus       154 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L-  232 (461)
T 1z7x_W          154 LSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL-  232 (461)
T ss_dssp             CBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEE-
T ss_pred             CCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEE-
Confidence            33211     1 11146777777766432110000010     01123332221   111      0123345777777 


Q ss_pred             Hhhhccccccccccccc-----cccccCCCCCcEEEecCCcCCcc-----CCCCCCCCCCcCeEeecCCCCCccccchHh
Q 038576          215 EAMMRGINHRRELKQIF-----KQESSNAKDLEKLSIFMCDNLTH-----LVPSSTSFQNLTTLTVWGCHGMINVLTSST  284 (411)
Q Consensus       215 ~~~~~~l~~~~~l~~~~-----~~~~~~~~~L~~L~l~~c~~l~~-----~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  284 (411)
                           ++.++. +.+..     ......+++|++|++++|. +..     +......+++|+.|++++|. +++......
T Consensus       233 -----~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l  304 (461)
T 1z7x_W          233 -----ALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLL  304 (461)
T ss_dssp             -----ECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHH
T ss_pred             -----eccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHH
Confidence                 777764 33221     1112346778888887763 322     12222236777777777763 333222111


Q ss_pred             hh----ccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCceeccC--CCcccccCCCcceE
Q 038576          285 AR----SLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCS--GNNCAFKFPSLERL  358 (411)
Q Consensus       285 ~~----~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~~~~~~L~~L  358 (411)
                      ..    ..++|++|++++|. ++.....       ..+.....+++|++|+++++ .+.+....  ........++|++|
T Consensus       305 ~~~l~~~~~~L~~L~L~~n~-l~~~~~~-------~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L  375 (461)
T 1z7x_W          305 CETLLEPGCQLESLWVKSCS-FTAACCS-------HFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVL  375 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTSC-CBGGGHH-------HHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             HHHhccCCccceeeEcCCCC-CchHHHH-------HHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEE
Confidence            11    22577777777765 3322100       00112233566777777765 34432000  00000013567777


Q ss_pred             eecCCCCCc-----cccCCCCCCCCceEEEEe
Q 038576          359 VVNRCPNMK-----IFSEGELSTPKLQKVQMS  385 (411)
Q Consensus       359 ~i~~C~~l~-----~~p~~~~~~~~L~~l~l~  385 (411)
                      ++++| .+.     .+|..+...++|++|+++
T Consensus       376 ~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~  406 (461)
T 1z7x_W          376 WLADC-DVSDSSCSSLAATLLANHSLRELDLS  406 (461)
T ss_dssp             ECTTS-CCCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred             ECCCC-CCChhhHHHHHHHHHhCCCccEEECC
Confidence            77665 344     445444456667776665

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.68  E-value=7.3e-16  Score=140.12  Aligned_cols=199  Identities=18%  Similarity=0.130  Sum_probs=137.8

Q ss_pred             hhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCcccccCCCCcc
Q 038576           10 LGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLE   87 (411)
Q Consensus        10 l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~   87 (411)
                      ++++.+++.++++++.++. |..+.  +++++|++++|.++.+ |..+.++++|++|++++ +.++.++.  .+.+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~--~~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR-AELTKLQV--DGTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT-SCCCEEEC--CSCCTTCC
T ss_pred             ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCC-CccCcccC--CCCCCcCC
Confidence            6778889999999999888 76664  6899999999998866 45688999999999999 67888876  47899999


Q ss_pred             EEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc-ccccCCCCcEEEEEecCCccccCcCCccc
Q 038576           88 ELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRILIGDSREYDAWDGISR  166 (411)
Q Consensus        88 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~~~~~~~~~~~~~~~~  166 (411)
                      +|++++|.+..             .+..+..+++|++|++++|.+..++. .+..+++|++|++..+.....+.      
T Consensus        81 ~L~Ls~N~l~~-------------l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~------  141 (290)
T 1p9a_G           81 TLDLSHNQLQS-------------LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP------  141 (290)
T ss_dssp             EEECCSSCCSS-------------CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT------
T ss_pred             EEECCCCcCCc-------------CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh------
Confidence            99999998752             33567788899999999988777764 46777888888775333221111      


Q ss_pred             eeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEe
Q 038576          167 ISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSI  246 (411)
Q Consensus       167 l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l  246 (411)
                                                         ..+..+++|+.|      ++.++. ++.++...+..+++|+.|++
T Consensus       142 -----------------------------------~~~~~l~~L~~L------~L~~N~-l~~l~~~~~~~l~~L~~L~L  179 (290)
T 1p9a_G          142 -----------------------------------GLLTPTPKLEKL------SLANNN-LTELPAGLLNGLENLDTLLL  179 (290)
T ss_dssp             -----------------------------------TTTTTCTTCCEE------ECTTSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred             -----------------------------------hhcccccCCCEE------ECCCCc-CCccCHHHhcCcCCCCEEEC
Confidence                                               011234566666      666654 45555444455667777777


Q ss_pred             cCCcCCccCCCCCCCCCCcCeEeecCCCC
Q 038576          247 FMCDNLTHLVPSSTSFQNLTTLTVWGCHG  275 (411)
Q Consensus       247 ~~c~~l~~~~~~~~~~~~L~~L~l~~c~~  275 (411)
                      +++ .+...+......++|+.+++.+++-
T Consensus       180 ~~N-~l~~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          180 QEN-SLYTIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             CSS-CCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             CCC-cCCccChhhcccccCCeEEeCCCCc
Confidence            663 3334433333355666666665543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.67  E-value=4e-16  Score=143.23  Aligned_cols=208  Identities=19%  Similarity=0.269  Sum_probs=153.7

Q ss_pred             EecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccccccC
Q 038576           20 SLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWG   99 (411)
Q Consensus        20 ~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~   99 (411)
                      .+..+.+.+......+++|++|+++++.++.+| .+..+++|++|++++ +.+..++.  +..+++|++|++++|.+.. 
T Consensus        25 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~-n~i~~~~~--~~~l~~L~~L~L~~n~l~~-   99 (308)
T 1h6u_A           25 AAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKD-NQITDLAP--LKNLTKITELELSGNPLKN-   99 (308)
T ss_dssp             HTTCSSTTSEECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCS-SCCCCCGG--GTTCCSCCEEECCSCCCSC-
T ss_pred             HhCCCCcCceecHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccC-CcCCCChh--HccCCCCCEEEccCCcCCC-
Confidence            444555555455667889999999999998887 588999999999999 57888876  8899999999999998753 


Q ss_pred             ccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCCccceeEEEecCCcccc
Q 038576          100 KVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANIC  179 (411)
Q Consensus       100 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~~~~~~~~  179 (411)
                                   ...+..+++|++|++++|....++. +..+++|++|++.                            
T Consensus       100 -------------~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~----------------------------  137 (308)
T 1h6u_A          100 -------------VSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLD----------------------------  137 (308)
T ss_dssp             -------------CGGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECC----------------------------
T ss_pred             -------------chhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECC----------------------------
Confidence                         2467888889999998887766654 5566666666553                            


Q ss_pred             cccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCCccCCCCC
Q 038576          180 LNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSS  259 (411)
Q Consensus       180 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  259 (411)
                                                                 ++. +..+..  ...+++|+.|+++++ .+....+ .
T Consensus       138 -------------------------------------------~n~-l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~-l  169 (308)
T 1h6u_A          138 -------------------------------------------LNQ-ITNISP--LAGLTNLQYLSIGNA-QVSDLTP-L  169 (308)
T ss_dssp             -------------------------------------------SSC-CCCCGG--GGGCTTCCEEECCSS-CCCCCGG-G
T ss_pred             -------------------------------------------CCc-cCcCcc--ccCCCCccEEEccCC-cCCCChh-h
Confidence                                                       221 122211  346789999999986 4555544 3


Q ss_pred             CCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCc
Q 038576          260 TSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLT  339 (411)
Q Consensus       260 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~  339 (411)
                      ..+++|+.|++++|. ++++++   +..+++|++|++++|. +..+..             ...+++|+.|++++++ ++
T Consensus       170 ~~l~~L~~L~l~~n~-l~~~~~---l~~l~~L~~L~L~~N~-l~~~~~-------------l~~l~~L~~L~l~~N~-i~  230 (308)
T 1h6u_A          170 ANLSKLTTLKADDNK-ISDISP---LASLPNLIEVHLKNNQ-ISDVSP-------------LANTSNLFIVTLTNQT-IT  230 (308)
T ss_dssp             TTCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEECTTSC-CCBCGG-------------GTTCTTCCEEEEEEEE-EE
T ss_pred             cCCCCCCEEECCCCc-cCcChh---hcCCCCCCEEEccCCc-cCcccc-------------ccCCCCCCEEEccCCe-ee
Confidence            449999999998885 555533   5889999999999986 655542             2348999999999975 44


Q ss_pred             ee
Q 038576          340 SF  341 (411)
Q Consensus       340 ~~  341 (411)
                      ..
T Consensus       231 ~~  232 (308)
T 1h6u_A          231 NQ  232 (308)
T ss_dssp             CC
T ss_pred             cC
Confidence            44

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.66  E-value=4.1e-16  Score=140.87  Aligned_cols=132  Identities=27%  Similarity=0.338  Sum_probs=108.7

Q ss_pred             CCCCCh-hhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccch-HHhcCCCCCCEEecCCCCCccccCcc
Q 038576            3 LLALPS-SLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELA-GEIGQLTQLRLLNLSKCFELKVIPPN   78 (411)
Q Consensus         3 l~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~~~~~~~~   78 (411)
                      ++.+|. .+.++.+|++|++++|.++.  +..+.++++|++|++++|.++.++ ..++++++|++|++++ +.+..++..
T Consensus        40 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~  118 (276)
T 2z62_A           40 LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE-TNLASLENF  118 (276)
T ss_dssp             CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT-SCCCCSTTC
T ss_pred             ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCC-CCccccCch
Confidence            455554 78999999999999999988  457999999999999999999766 5689999999999999 577777765


Q ss_pred             cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc-ccccCCCCc
Q 038576           79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQ  146 (411)
Q Consensus        79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~  146 (411)
                      .++.+++|++|++++|.+....           .+..+.++++|++|++++|....++. .+..+.+|+
T Consensus       119 ~~~~l~~L~~L~l~~n~l~~~~-----------l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  176 (276)
T 2z62_A          119 PIGHLKTLKELNVAHNLIQSFK-----------LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP  176 (276)
T ss_dssp             CCTTCTTCCEEECCSSCCCCCC-----------CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred             hcccCCCCCEEECcCCccceec-----------CchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc
Confidence            5899999999999999886411           34788999999999999998777653 444455555

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.65  E-value=1.7e-15  Score=136.41  Aligned_cols=158  Identities=22%  Similarity=0.397  Sum_probs=128.1

Q ss_pred             CCCCChhhhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCCCCccccCccccc
Q 038576            3 LLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVIPPNVIS   81 (411)
Q Consensus         3 l~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~~~~~l~   81 (411)
                      ++.++ .+..+.+|++|++++|.++.++.++++++|++|++++|.++.++.. ++++++|++|++++ +.++.++...++
T Consensus        53 i~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~  130 (272)
T 3rfs_A           53 IKSVQ-GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFD  130 (272)
T ss_dssp             CCCCT-TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTT
T ss_pred             ccccc-ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC-CcCCccCHHHhc
Confidence            34444 5889999999999999998877899999999999999999977654 78999999999999 578888877689


Q ss_pred             CCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc-cccCCCCcEEEEEecCCccccC
Q 038576           82 SLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRILIGDSREYDA  160 (411)
Q Consensus        82 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~i~~~~~~~~~~  160 (411)
                      .+++|++|++++|.+..            .....+.++++|++|++++|.+..++.. +..+++|++|++..+.....+.
T Consensus       131 ~l~~L~~L~L~~n~l~~------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          131 KLTNLTYLNLAHNQLQS------------LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             TCTTCCEEECCSSCCCC------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             cCCCCCEEECCCCccCc------------cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence            99999999999998864            3335578999999999999998877765 5789999999998776554443


Q ss_pred             --cCCccceeEEEecC
Q 038576          161 --WDGISRISKLKLTN  174 (411)
Q Consensus       161 --~~~~~~l~~L~~~~  174 (411)
                        +....+++.|++.+
T Consensus       199 ~~~~~l~~L~~L~l~~  214 (272)
T 3rfs_A          199 GVFDRLTSLQYIWLHD  214 (272)
T ss_dssp             TTTTTCTTCCEEECCS
T ss_pred             HHHhCCcCCCEEEccC
Confidence              22355555555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.65  E-value=4.3e-15  Score=135.04  Aligned_cols=201  Identities=15%  Similarity=0.125  Sum_probs=143.7

Q ss_pred             cccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccccccCccccccccccc
Q 038576           31 IIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRN  110 (411)
Q Consensus        31 ~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~  110 (411)
                      .+++++++++++++++.++.+|..+.  +++++|++++ +.+..++...+..+++|++|++++|.+..  +         
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~---------   70 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSE-NLLYTFSLATLMPYTRLTQLNLDRAELTK--L---------   70 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTT-SCCSEEEGGGGTTCTTCCEEECTTSCCCE--E---------
T ss_pred             cccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCC-CcCCccCHHHhhcCCCCCEEECCCCccCc--c---------
Confidence            36778999999999999999987765  6899999999 67888866669999999999999998753  2         


Q ss_pred             cchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCCccceeEEEecCCccccccccccccccc
Q 038576          111 ASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKR  190 (411)
Q Consensus       111 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~  190 (411)
                         .....+++|++|++++|.+..+|..+..+++|++|++..+.....+.                              
T Consensus        71 ---~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~------------------------------  117 (290)
T 1p9a_G           71 ---QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL------------------------------  117 (290)
T ss_dssp             ---ECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCS------------------------------
T ss_pred             ---cCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCH------------------------------
Confidence               22268899999999999999999888888999999887444331110                              


Q ss_pred             chhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCCccCCC-CCCCCCCcCeEe
Q 038576          191 IEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVP-SSTSFQNLTTLT  269 (411)
Q Consensus       191 l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~  269 (411)
                                 ..+..+++|++|      .+.++. ++.++...+..+++|+.|+++++ .+...++ ....+++|+.|+
T Consensus       118 -----------~~~~~l~~L~~L------~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~  178 (290)
T 1p9a_G          118 -----------GALRGLGELQEL------YLKGNE-LKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLL  178 (290)
T ss_dssp             -----------STTTTCTTCCEE------ECTTSC-CCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEE
T ss_pred             -----------HHHcCCCCCCEE------ECCCCC-CCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEE
Confidence                       012345677777      777754 55555544556777888888774 3444443 223477788888


Q ss_pred             ecCCCCCccccchHhhhccccccEEeEcccc
Q 038576          270 VWGCHGMINVLTSSTARSLVRLRQMTIKVCV  300 (411)
Q Consensus       270 l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  300 (411)
                      +++|. ++.++.  .+...++|+.|++.+++
T Consensus       179 L~~N~-l~~ip~--~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          179 LQENS-LYTIPK--GFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CCSSC-CCCCCT--TTTTTCCCSEEECCSCC
T ss_pred             CCCCc-CCccCh--hhcccccCCeEEeCCCC
Confidence            87664 445433  23445677777777654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.63  E-value=4.3e-17  Score=154.67  Aligned_cols=140  Identities=15%  Similarity=0.165  Sum_probs=95.6

Q ss_pred             CCCChhhhccccCcEEEecCCcCCC--C----ccccccccCcEEEeeCCccc----cchHHh-------cCCCCCCEEec
Q 038576            4 LALPSSLGLLQNLQTLSLDDCELGD--M----AIIGDLKKLVILALRGSDME----ELAGEI-------GQLTQLRLLNL   66 (411)
Q Consensus         4 ~~lp~~l~~l~~L~~L~l~~~~l~~--~----~~l~~l~~L~~L~L~~~~l~----~lp~~i-------~~l~~L~~L~L   66 (411)
                      ..++..+..+.+|++|++++|.++.  +    ..+..+++|++|++++|.+.    .+|..+       .++++|++|++
T Consensus        22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            4567778888899999999988776  3    33667889999999887443    344444       68889999999


Q ss_pred             CCCCCccc-----cCcccccCCCCccEEEecccccccCccccccccccccchhhccCC---------CCCCEEEEeeccC
Q 038576           67 SKCFELKV-----IPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNL---------SKLTSLEILIQDE  132 (411)
Q Consensus        67 ~~c~~~~~-----~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l---------~~L~~L~l~~~~~  132 (411)
                      ++| .+..     ++.. +..+++|++|++++|.+.. ..+       ......+..+         ++|++|++++|.+
T Consensus       102 s~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~-~~~-------~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l  171 (386)
T 2ca6_A          102 SDN-AFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGP-QAG-------AKIARALQELAVNKKAKNAPPLRSIICGRNRL  171 (386)
T ss_dssp             CSC-CCCTTTHHHHHHH-HHHCTTCCEEECCSSCCHH-HHH-------HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             CCC-cCCHHHHHHHHHH-HHhCCCCCEEECcCCCCCH-HHH-------HHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence            984 5554     4544 7788999999999887743 000       0112233334         7888888888875


Q ss_pred             C--cCC---cccccCCCCcEEEEEec
Q 038576          133 K--TLP---RDLSFFKMLQRYRILIG  153 (411)
Q Consensus       133 ~--~~~---~~l~~~~~L~~L~i~~~  153 (411)
                      .  .++   ..+..+++|++|++..+
T Consensus       172 ~~~~~~~l~~~l~~~~~L~~L~L~~n  197 (386)
T 2ca6_A          172 ENGSMKEWAKTFQSHRLLHTVKMVQN  197 (386)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred             CcHHHHHHHHHHHhCCCcCEEECcCC
Confidence            4  333   34556777888777533

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.63  E-value=3.3e-15  Score=132.94  Aligned_cols=159  Identities=22%  Similarity=0.375  Sum_probs=128.8

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPN   78 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~   78 (411)
                      .++.+|..+.  .++++|++++|.++.  +..+.++++|++|++++|.++.++. .+.++++|++|++++ +.++.++..
T Consensus        25 ~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~  101 (251)
T 3m19_A           25 SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN-NQLASLPLG  101 (251)
T ss_dssp             CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTT
T ss_pred             CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC-CcccccChh
Confidence            4677887765  589999999999888  5678999999999999999986654 478999999999999 678888877


Q ss_pred             cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc-ccccCCCCcEEEEEecCCcc
Q 038576           79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRILIGDSRE  157 (411)
Q Consensus        79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~~~~~~~  157 (411)
                      .++.+++|++|++++|.+..            .....+..+++|++|++++|.+..++. .+..+++|++|++..+....
T Consensus       102 ~~~~l~~L~~L~L~~N~l~~------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A          102 VFDHLTQLDKLYLGGNQLKS------------LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             TTTTCTTCCEEECCSSCCCC------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             HhcccCCCCEEEcCCCcCCC------------cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            68899999999999998764            223557889999999999999888877 57788999999998887665


Q ss_pred             ccC--cCCccceeEEEecCC
Q 038576          158 YDA--WDGISRISKLKLTNG  175 (411)
Q Consensus       158 ~~~--~~~~~~l~~L~~~~~  175 (411)
                      .+.  +....+++.|++.++
T Consensus       170 ~~~~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          170 VPHGAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSC
T ss_pred             cCHHHHhCCCCCCEEEeeCC
Confidence            553  334677777777553

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.62  E-value=3.8e-15  Score=135.48  Aligned_cols=123  Identities=19%  Similarity=0.270  Sum_probs=90.0

Q ss_pred             hhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEE
Q 038576           10 LGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEEL   89 (411)
Q Consensus        10 l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L   89 (411)
                      +.++.+|++|++++|.++..+.++.+++|++|++++|.++.++. ++++++|++|++++ +.++.++.  ++.+++|++|
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L  117 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDE-NKVKDLSS--LKDLKKLKSL  117 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCGGG--GTTCTTCCEE
T ss_pred             hhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCC-CcCCCChh--hccCCCCCEE
Confidence            45677888888888887775557778888888888888887766 77888888888888 56777664  7788888888


Q ss_pred             EecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEE
Q 038576           90 YIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRIL  151 (411)
Q Consensus        90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~  151 (411)
                      ++++|.+..              ...+..+++|++|++++|....+ ..+..+++|+.|+++
T Consensus       118 ~L~~n~i~~--------------~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~  164 (291)
T 1h6t_A          118 SLEHNGISD--------------INGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLE  164 (291)
T ss_dssp             ECTTSCCCC--------------CGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECC
T ss_pred             ECCCCcCCC--------------ChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEcc
Confidence            888887642              24566777788888877776655 445566666666554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.61  E-value=3.3e-15  Score=130.07  Aligned_cols=138  Identities=19%  Similarity=0.305  Sum_probs=117.2

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCcc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPPN   78 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~~   78 (411)
                      .++.+|..+.  .+|+.|++++|.++.  +..|..+++|++|++++|.++.+ |..+.++++|++|++++ +.++.+|..
T Consensus        22 ~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~   98 (220)
T 2v9t_B           22 GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-NKITELPKS   98 (220)
T ss_dssp             CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS-SCCCCCCTT
T ss_pred             CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC-CcCCccCHh
Confidence            3677887665  689999999999988  45789999999999999999966 67799999999999999 688899888


Q ss_pred             cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc-cccCCCCcEEEEEecC
Q 038576           79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRILIGD  154 (411)
Q Consensus        79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~i~~~~  154 (411)
                      ++..+++|++|++++|.+..            ..+..+..+++|++|++++|.+..++.. +..+++|+.|++..+.
T Consensus        99 ~f~~l~~L~~L~L~~N~l~~------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B           99 LFEGLFSLQLLLLNANKINC------------LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             TTTTCTTCCEEECCSSCCCC------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             HccCCCCCCEEECCCCCCCE------------eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence            78899999999999998875            3447788999999999999998887764 7778899999887444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.61  E-value=1.5e-15  Score=139.56  Aligned_cols=221  Identities=14%  Similarity=0.086  Sum_probs=114.0

Q ss_pred             cCcEEEecCCcCCC--C---ccccccccCcEEEeeCCccc-cchHHh--cCCCCCCEEecCCCCCccc-cC---cccccC
Q 038576           15 NLQTLSLDDCELGD--M---AIIGDLKKLVILALRGSDME-ELAGEI--GQLTQLRLLNLSKCFELKV-IP---PNVISS   82 (411)
Q Consensus        15 ~L~~L~l~~~~l~~--~---~~l~~l~~L~~L~L~~~~l~-~lp~~i--~~l~~L~~L~L~~c~~~~~-~~---~~~l~~   82 (411)
                      .++.+.+.++.+..  .   ..+..+++|++|++++|.+. ..|..+  +++++|++|++++| .+.. .+   ...+..
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTTB
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhhh
Confidence            35556666555443  1   11223345666666666665 344444  56666666666663 3332 11   111335


Q ss_pred             CCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCc---C--CcccccCCCCcEEEEEecCCcc
Q 038576           83 LSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKT---L--PRDLSFFKMLQRYRILIGDSRE  157 (411)
Q Consensus        83 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---~--~~~l~~~~~L~~L~i~~~~~~~  157 (411)
                      +++|++|++++|.+..            ..+..+..+++|++|++++|....   +  +..+..+++|++|+++.+....
T Consensus       144 ~~~L~~L~Ls~n~l~~------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  211 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPA------------FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET  211 (310)
T ss_dssp             CSCCCEEEEECCSSCC------------CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC
T ss_pred             ccCCCEEEeeCCCcch------------hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc
Confidence            6666666666666543            223555666666666666665322   1  1222456666666665433221


Q ss_pred             ccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccC
Q 038576          158 YDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSN  237 (411)
Q Consensus       158 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~  237 (411)
                      .+..                              .        ......+++|++|      +++++. +....+.....
T Consensus       212 l~~~------------------------------~--------~~l~~~l~~L~~L------~Ls~N~-l~~~~p~~~~~  246 (310)
T 4glp_A          212 PTGV------------------------------C--------AALAAAGVQPHSL------DLSHNS-LRATVNPSAPR  246 (310)
T ss_dssp             HHHH------------------------------H--------HHHHHHTCCCSSE------ECTTSC-CCCCCCSCCSS
T ss_pred             hHHH------------------------------H--------HHHHhcCCCCCEE------ECCCCC-CCccchhhHHh
Confidence            1100                              0        0001234566666      666655 33332212222


Q ss_pred             ---CCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccc
Q 038576          238 ---AKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCV  300 (411)
Q Consensus       238 ---~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  300 (411)
                         +++|++|+++++ .++..+...  +++|+.|++++|. ++.++.   ...+++|+.|++++++
T Consensus       247 ~~~~~~L~~L~Ls~N-~l~~lp~~~--~~~L~~L~Ls~N~-l~~~~~---~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          247 CMWSSALNSLNLSFA-GLEQVPKGL--PAKLRVLDLSSNR-LNRAPQ---PDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CCCCTTCCCEECCSS-CCCSCCSCC--CSCCSCEECCSCC-CCSCCC---TTSCCCCSCEECSSTT
T ss_pred             ccCcCcCCEEECCCC-CCCchhhhh--cCCCCEEECCCCc-CCCCch---hhhCCCccEEECcCCC
Confidence               367888888774 344433322  4788888887764 444322   3667888888888765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.60  E-value=5.4e-15  Score=126.47  Aligned_cols=149  Identities=18%  Similarity=0.262  Sum_probs=123.9

Q ss_pred             hhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccc-cCcccccCCCCccE
Q 038576           10 LGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKV-IPPNVISSLSRLEE   88 (411)
Q Consensus        10 l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~-~~~~~l~~L~~L~~   88 (411)
                      ..++.+|++|++++|.+++.+.+..+++|++|++++|.++.++ .+..+++|++|++++ +.+.. .+.. ++.+++|++
T Consensus        40 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~-n~l~~~~~~~-l~~l~~L~~  116 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMG-KDVTSDKIPN-LSGLTSLTL  116 (197)
T ss_dssp             HHHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEEC-TTCBGGGSCC-CTTCTTCCE
T ss_pred             hhhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeEC-CccCcccChh-hcCCCCCCE
Confidence            4678899999999999998337899999999999999887765 688999999999999 46665 4554 899999999


Q ss_pred             EEecccccccCccccccccccccchhhccCCCCCCEEEEeecc-CCcCCcccccCCCCcEEEEEecCCccccCcCCccce
Q 038576           89 LYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQD-EKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRI  167 (411)
Q Consensus        89 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l  167 (411)
                      |++++|.+..            ..+..+..+++|++|++++|. ...++ .+..+++|++|++..+....++.+....++
T Consensus       117 L~Ls~n~i~~------------~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L  183 (197)
T 4ezg_A          117 LDISHSAHDD------------SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKL  183 (197)
T ss_dssp             EECCSSBCBG------------GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSC
T ss_pred             EEecCCccCc------------HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccCCCC
Confidence            9999998865            456888999999999999998 77776 688899999999988777666655557777


Q ss_pred             eEEEecC
Q 038576          168 SKLKLTN  174 (411)
Q Consensus       168 ~~L~~~~  174 (411)
                      +.|++.+
T Consensus       184 ~~L~l~~  190 (197)
T 4ezg_A          184 NQLYAFS  190 (197)
T ss_dssp             CEEEECB
T ss_pred             CEEEeeC
Confidence            7777754

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.58  E-value=3.5e-14  Score=126.27  Aligned_cols=123  Identities=20%  Similarity=0.275  Sum_probs=93.5

Q ss_pred             ccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEe
Q 038576           14 QNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYI   91 (411)
Q Consensus        14 ~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l   91 (411)
                      .+.++++++++.++. |..+.  .++++|++++|.++.++. .++++++|++|++++ +.+..++...+..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDY-NQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCC-CcCCccCHhHhccCCcCCEEEC
Confidence            467889999988888 76665  589999999998886654 588899999999999 5777777666888999999999


Q ss_pred             cccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc-cccCCCCcEEEEE
Q 038576           92 GQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRIL  151 (411)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~i~  151 (411)
                      ++|.+..            ..+..+..+++|++|++++|.+..++.. +..+++|+.|++.
T Consensus        91 ~~n~l~~------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  139 (251)
T 3m19_A           91 ANNQLAS------------LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN  139 (251)
T ss_dssp             TTSCCCC------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCcccc------------cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECc
Confidence            9988764            2335667788888888888877766654 3445555555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.58  E-value=1.6e-14  Score=131.37  Aligned_cols=153  Identities=24%  Similarity=0.350  Sum_probs=130.9

Q ss_pred             CCCCChhhhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccC
Q 038576            3 LLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISS   82 (411)
Q Consensus         3 l~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~   82 (411)
                      ++.+| .+..+.+|++|++++|.++....+.++++|++|++++|.++.+|. ++++++|++|++++ +.+..++.  +..
T Consensus        58 i~~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~-n~i~~~~~--l~~  132 (291)
T 1h6t_A           58 IKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEH-NGISDING--LVH  132 (291)
T ss_dssp             CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTT-SCCCCCGG--GGG
T ss_pred             cccCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCC-CcCCCChh--hcC
Confidence            45565 488999999999999999993339999999999999999998765 89999999999999 57888753  889


Q ss_pred             CCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcC
Q 038576           83 LSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWD  162 (411)
Q Consensus        83 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~  162 (411)
                      +++|++|++++|.+..              ...+..+++|++|++++|....++. +..+++|++|+++.+....++.+.
T Consensus       133 l~~L~~L~l~~n~l~~--------------~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~l~  197 (291)
T 1h6t_A          133 LPQLESLYLGNNKITD--------------ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALA  197 (291)
T ss_dssp             CTTCCEEECCSSCCCC--------------CGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGGT
T ss_pred             CCCCCEEEccCCcCCc--------------chhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChhhc
Confidence            9999999999998753              2678899999999999999888776 889999999999988877777766


Q ss_pred             CccceeEEEecCC
Q 038576          163 GISRISKLKLTNG  175 (411)
Q Consensus       163 ~~~~l~~L~~~~~  175 (411)
                      ...+++.|++.++
T Consensus       198 ~l~~L~~L~l~~n  210 (291)
T 1h6t_A          198 GLKNLDVLELFSQ  210 (291)
T ss_dssp             TCTTCSEEEEEEE
T ss_pred             cCCCCCEEECcCC
Confidence            6888888887653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.57  E-value=1.4e-14  Score=123.76  Aligned_cols=135  Identities=20%  Similarity=0.300  Sum_probs=115.5

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCCCccccccccCcEEEeeCCcccc-chHHhcCCCCCCEEecCCCCCccc-cCccc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEE-LAGEIGQLTQLRLLNLSKCFELKV-IPPNV   79 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~-lp~~i~~l~~L~~L~L~~c~~~~~-~~~~~   79 (411)
                      .++.+| .+..+.+|++|++++|.++.++.+..+++|++|++++|.++. .|..++.+++|++|++++| .+.. .+.. 
T Consensus        55 ~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~i~~~~~~~-  131 (197)
T 4ezg_A           55 NVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS-AHDDSILTK-  131 (197)
T ss_dssp             CCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS-BCBGGGHHH-
T ss_pred             CccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC-ccCcHhHHH-
Confidence            356778 789999999999999988887789999999999999999984 6778999999999999994 6665 4444 


Q ss_pred             ccCCCCccEEEecccc-cccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecC
Q 038576           80 ISSLSRLEELYIGQSP-IQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGD  154 (411)
Q Consensus        80 l~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~  154 (411)
                      ++.+++|++|++++|. +..              ...+..+++|++|++++|....++ .+..+++|++|++..+.
T Consensus       132 l~~l~~L~~L~L~~n~~i~~--------------~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          132 INTLPKVNSIDLSYNGAITD--------------IMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             HTTCSSCCEEECCSCTBCCC--------------CGGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred             HhhCCCCCEEEccCCCCccc--------------cHhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence            8999999999999997 532              246889999999999999988876 77899999999998655

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.57  E-value=1.7e-14  Score=124.48  Aligned_cols=134  Identities=24%  Similarity=0.383  Sum_probs=97.7

Q ss_pred             CCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCCCCccccCccc
Q 038576            3 LLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVIPPNV   79 (411)
Q Consensus         3 l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~~~~~   79 (411)
                      ++.+|..+  ..+|++|++++|.++.  +..++.+++|++|++++|.++.+|.. +..+++|++|++++ +.++.++...
T Consensus        19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~   95 (208)
T 2o6s_A           19 RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST-NQLQSLPNGV   95 (208)
T ss_dssp             CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTT
T ss_pred             ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC-CcCCccCHhH
Confidence            45566544  3478888888888777  34567888888888888888877654 57788888888888 5677777665


Q ss_pred             ccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc-cccCCCCcEEEEE
Q 038576           80 ISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRIL  151 (411)
Q Consensus        80 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~i~  151 (411)
                      ++.+++|++|++++|.+..            .....+.++++|++|++++|.+..++.. +..+++|++|++.
T Consensus        96 ~~~l~~L~~L~L~~N~l~~------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  156 (208)
T 2o6s_A           96 FDKLTQLKELALNTNQLQS------------LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH  156 (208)
T ss_dssp             TTTCTTCCEEECCSSCCCC------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             hcCccCCCEEEcCCCcCcc------------cCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEec
Confidence            6788888888888887754            2224567788888888888877666654 5667777777765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.56  E-value=1.3e-14  Score=144.64  Aligned_cols=127  Identities=18%  Similarity=0.249  Sum_probs=102.6

Q ss_pred             hhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEE
Q 038576           10 LGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEEL   89 (411)
Q Consensus        10 l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L   89 (411)
                      +.++.+|+.|++++|.+..++.++.+++|++|+|++|.+..++. +..+++|++|+|++ +.+..++.  +..+++|++|
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~-N~l~~l~~--l~~l~~L~~L  114 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE-NKIKDLSS--LKDLKKLKSL  114 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS-SCCCCCTT--STTCTTCCEE
T ss_pred             hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC-CCCCCChh--hccCCCCCEE
Confidence            56788899999999888885578888999999999998888776 88899999999998 57777764  8889999999


Q ss_pred             EecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCC
Q 038576           90 YIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDS  155 (411)
Q Consensus        90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~  155 (411)
                      ++++|.+..              +..+..+++|+.|++++|.+..+ ..+..+++|+.|+++.+..
T Consensus       115 ~Ls~N~l~~--------------l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l  165 (605)
T 1m9s_A          115 SLEHNGISD--------------INGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI  165 (605)
T ss_dssp             ECTTSCCCC--------------CGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCC
T ss_pred             EecCCCCCC--------------CccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcC
Confidence            999888743              24578888899999988887776 5677788888888764443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.56  E-value=1.8e-14  Score=128.98  Aligned_cols=151  Identities=21%  Similarity=0.279  Sum_probs=127.3

Q ss_pred             CCCCChhhhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccC
Q 038576            3 LLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISS   82 (411)
Q Consensus         3 l~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~   82 (411)
                      +++++ .+.++.+|++|++++|.++..+.++.+++|++|++++|.++.++. ++++++|++|++++ +.++.+|.  +..
T Consensus        31 i~~~~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~-N~l~~l~~--~~~  105 (263)
T 1xeu_A           31 VTDLV-SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR-NRLKNLNG--IPS  105 (263)
T ss_dssp             TTSEE-CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS-SCCSCCTT--CCC
T ss_pred             ccccc-chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC-CccCCcCc--ccc
Confidence            45566 678999999999999999985588999999999999999998887 99999999999999 68888886  445


Q ss_pred             CCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcC
Q 038576           83 LSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWD  162 (411)
Q Consensus        83 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~  162 (411)
                       ++|++|++++|.+..              ...+.++++|++|++++|.+..++ .+..+++|+.|+++.+.....+.+.
T Consensus       106 -~~L~~L~L~~N~l~~--------------~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~~~l~  169 (263)
T 1xeu_A          106 -ACLSRLFLDNNELRD--------------TDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNTGGLT  169 (263)
T ss_dssp             -SSCCEEECCSSCCSB--------------SGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBCTTST
T ss_pred             -CcccEEEccCCccCC--------------ChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcchHHhc
Confidence             999999999998753              246889999999999999988875 6788999999999887776665555


Q ss_pred             CccceeEEEecC
Q 038576          163 GISRISKLKLTN  174 (411)
Q Consensus       163 ~~~~l~~L~~~~  174 (411)
                      ...+++.|++.+
T Consensus       170 ~l~~L~~L~l~~  181 (263)
T 1xeu_A          170 RLKKVNWIDLTG  181 (263)
T ss_dssp             TCCCCCEEEEEE
T ss_pred             cCCCCCEEeCCC
Confidence            577788887755

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.56  E-value=1.8e-14  Score=125.43  Aligned_cols=138  Identities=17%  Similarity=0.254  Sum_probs=108.7

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC-C--ccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD-M--AIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPP   77 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~-~--~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~   77 (411)
                      .++.+|..+.  ..+++|++++|.++. +  ..|..+++|++|++++|.++.++. .++++++|++|++++ +.++.++.
T Consensus        22 ~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~   98 (220)
T 2v70_A           22 KLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS-NRLENVQH   98 (220)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCCCCG
T ss_pred             CcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC-CccCccCH
Confidence            3567776654  356889999988877 3  347888899999999998887765 688899999999998 67888877


Q ss_pred             ccccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcC-CcccccCCCCcEEEEEecC
Q 038576           78 NVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTL-PRDLSFFKMLQRYRILIGD  154 (411)
Q Consensus        78 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~i~~~~  154 (411)
                      ..+..+++|++|++++|.+..            ..+..+..+++|++|++++|.+..+ |..+..+++|+.|++..+.
T Consensus        99 ~~~~~l~~L~~L~Ls~N~l~~------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           99 KMFKGLESLKTLMLRSNRITC------------VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             GGGTTCSSCCEEECTTSCCCC------------BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             hHhcCCcCCCEEECCCCcCCe------------ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            778889999999999988765            3346778888899999998887776 5667788888888876443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.55  E-value=2e-14  Score=125.93  Aligned_cols=135  Identities=24%  Similarity=0.338  Sum_probs=96.4

Q ss_pred             CCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCCCCccccCccc
Q 038576            3 LLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVIPPNV   79 (411)
Q Consensus         3 l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~~~~~   79 (411)
                      ++.+|..+.  .+|++|++++|.++.  +..+.++++|++|++++|.++.+|.. ++.+++|++|++++ +.++.++...
T Consensus        31 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~  107 (229)
T 3e6j_A           31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT-NQLTVLPSAV  107 (229)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTT
T ss_pred             cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC-CcCCccChhH
Confidence            566676554  678888888887776  56677778888888888877777644 57778888888887 5677777665


Q ss_pred             ccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc-ccccCCCCcEEEEEec
Q 038576           80 ISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRILIG  153 (411)
Q Consensus        80 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~~~  153 (411)
                      +..+++|++|++++|.+..             .+..+..+++|++|++++|.+..++. .+..+++|+.|++..+
T Consensus       108 ~~~l~~L~~L~Ls~N~l~~-------------lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          108 FDRLVHLKELFMCCNKLTE-------------LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             TTTCTTCCEEECCSSCCCS-------------CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             hCcchhhCeEeccCCcccc-------------cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence            6778888888888777652             33566777788888888777766664 3566777777776533

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.53  E-value=1.3e-14  Score=133.28  Aligned_cols=228  Identities=13%  Similarity=0.085  Sum_probs=154.5

Q ss_pred             ccCcEEEeeCCccc--cchH--HhcCCCCCCEEecCCCCCccccCcccc--cCCCCccEEEecccccccCcccccccccc
Q 038576           36 KKLVILALRGSDME--ELAG--EIGQLTQLRLLNLSKCFELKVIPPNVI--SSLSRLEELYIGQSPIQWGKVEGVDGERR  109 (411)
Q Consensus        36 ~~L~~L~L~~~~l~--~lp~--~i~~l~~L~~L~L~~c~~~~~~~~~~l--~~L~~L~~L~l~~~~~~~~~~~~~~~~~~  109 (411)
                      ..++.+.++++.+.  .+..  ....+++|++|++++|......|.. +  ..+++|++|++++|.+.. ..+.      
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n~i~~-~~~~------  135 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPL-PLEATGLALSSLRLRNVSWAT-GRSW------  135 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCC-SSSCCCBCCSSCEEESCCCSS-TTSS------
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhh-hhhccCCCCCEEEeecccccc-hhhh------
Confidence            46788999988775  2222  1224577999999996444455655 5  899999999999998764 1110      


Q ss_pred             ccchhhccCCCCCCEEEEeeccCCcCC-cccccCCCCcEEEEEecCCccccCcCCccceeEEEecCCccccccccccccc
Q 038576          110 NASLDELNNLSKLTSLEILIQDEKTLP-RDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQL  188 (411)
Q Consensus       110 ~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~  188 (411)
                       .....+..+++|++|++++|....++ ..++.+++|++|+++.+.......                            
T Consensus       136 -~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------------------------  186 (310)
T 4glp_A          136 -LAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG----------------------------  186 (310)
T ss_dssp             -HHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH----------------------------
T ss_pred             -hHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh----------------------------
Confidence             01134567999999999999977766 567889999999998776431000                            


Q ss_pred             ccchhcccCCCccccccccchhhhchHhhhccccccccccccccc---cccCCCCCcEEEecCCcCCccC-CCCCCCC--
Q 038576          189 KRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQ---ESSNAKDLEKLSIFMCDNLTHL-VPSSTSF--  262 (411)
Q Consensus       189 ~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~---~~~~~~~L~~L~l~~c~~l~~~-~~~~~~~--  262 (411)
                           +....    ....+++|++|      .++++. ++.+...   ....+++|++|+++++. +.+. +.....+  
T Consensus       187 -----~~~~~----~~~~l~~L~~L------~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~  249 (310)
T 4glp_A          187 -----LMAAL----CPHKFPAIQNL------ALRNTG-METPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCMW  249 (310)
T ss_dssp             -----HHTTS----CTTSSCCCCSC------BCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCCC
T ss_pred             -----hhHHH----hhhcCCCCCEE------ECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHhccC
Confidence                 00000    01256789999      998875 4433321   12467999999999854 4443 3222224  


Q ss_pred             -CCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCc
Q 038576          263 -QNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQ  336 (411)
Q Consensus       263 -~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  336 (411)
                       ++|++|++++|. ++.++..    -+++|+.|+++++. ++.++.             ...+++|+.|++++.+
T Consensus       250 ~~~L~~L~Ls~N~-l~~lp~~----~~~~L~~L~Ls~N~-l~~~~~-------------~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          250 SSALNSLNLSFAG-LEQVPKG----LPAKLRVLDLSSNR-LNRAPQ-------------PDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CTTCCCEECCSSC-CCSCCSC----CCSCCSCEECCSCC-CCSCCC-------------TTSCCCCSCEECSSTT
T ss_pred             cCcCCEEECCCCC-CCchhhh----hcCCCCEEECCCCc-CCCCch-------------hhhCCCccEEECcCCC
Confidence             799999998875 5566432    24899999999986 665533             1248999999999864

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.52  E-value=7.5e-16  Score=146.09  Aligned_cols=239  Identities=13%  Similarity=0.102  Sum_probs=149.0

Q ss_pred             ChhhhccccCcEEEecCCcCCC-----Ccc-------ccccccCcEEEeeCCcccc-----chHHhcCCCCCCEEecCCC
Q 038576            7 PSSLGLLQNLQTLSLDDCELGD-----MAI-------IGDLKKLVILALRGSDMEE-----LAGEIGQLTQLRLLNLSKC   69 (411)
Q Consensus         7 p~~l~~l~~L~~L~l~~~~l~~-----~~~-------l~~l~~L~~L~L~~~~l~~-----lp~~i~~l~~L~~L~L~~c   69 (411)
                      +..+.++++|++|++++|.+..     |..       +..+++|++|++++|.+..     +|..+.++++|++|++++|
T Consensus        53 ~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n  132 (386)
T 2ca6_A           53 SENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN  132 (386)
T ss_dssp             HHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred             HHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC
Confidence            3457789999999999986442     333       3688999999999999885     7888999999999999995


Q ss_pred             CCccccCccc----ccCC---------CCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCC---
Q 038576           70 FELKVIPPNV----ISSL---------SRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEK---  133 (411)
Q Consensus        70 ~~~~~~~~~~----l~~L---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---  133 (411)
                       .+...+...    +..+         ++|++|++++|.+....++        .....+..+++|++|++++|.+.   
T Consensus       133 -~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~--------~l~~~l~~~~~L~~L~L~~n~l~~~g  203 (386)
T 2ca6_A          133 -GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK--------EWAKTFQSHRLLHTVKMVQNGIRPEG  203 (386)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH--------HHHHHHHHCTTCCEEECCSSCCCHHH
T ss_pred             -CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH--------HHHHHHHhCCCcCEEECcCCCCCHhH
Confidence             555332211    3344         8999999999988631222        22356778999999999999866   


Q ss_pred             ---cCCcccccCCCCcEEEEEecCCccccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchh
Q 038576          134 ---TLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNV  210 (411)
Q Consensus       134 ---~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L  210 (411)
                         -.+..+..+++|++|+++.+....                               .+...+.      ..+..+++|
T Consensus       204 ~~~l~~~~l~~~~~L~~L~Ls~n~l~~-------------------------------~g~~~l~------~~l~~~~~L  246 (386)
T 2ca6_A          204 IEHLLLEGLAYCQELKVLDLQDNTFTH-------------------------------LGSSALA------IALKSWPNL  246 (386)
T ss_dssp             HHHHHHTTGGGCTTCCEEECCSSCCHH-------------------------------HHHHHHH------HHGGGCTTC
T ss_pred             HHHHHHHHhhcCCCccEEECcCCCCCc-------------------------------HHHHHHH------HHHccCCCc
Confidence               233367788899998886443210                               0000000      012245667


Q ss_pred             hhchHhhhccccccccccccc----cccc--cCCCCCcEEEecCCcCCc----cCCCCC-CCCCCcCeEeecCCCCCccc
Q 038576          211 ENGMEAMMRGINHRRELKQIF----KQES--SNAKDLEKLSIFMCDNLT----HLVPSS-TSFQNLTTLTVWGCHGMINV  279 (411)
Q Consensus       211 ~~L~~~~~~~l~~~~~l~~~~----~~~~--~~~~~L~~L~l~~c~~l~----~~~~~~-~~~~~L~~L~l~~c~~l~~~  279 (411)
                      ++|      .++++. +....    ....  ..+++|++|++++|....    ..+... ..+++|+.|++++|..-...
T Consensus       247 ~~L------~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          247 REL------GLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             CEE------ECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CEE------ECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            777      777665 33221    1111  236777777777754322    122221 22677777777776543322


Q ss_pred             c-chHhhhccccccEEeEcc
Q 038576          280 L-TSSTARSLVRLRQMTIKV  298 (411)
Q Consensus       280 ~-~~~~~~~l~~L~~L~l~~  298 (411)
                      + .......+++++.+++..
T Consensus       320 ~~~~~l~~~l~~~~~~~l~~  339 (386)
T 2ca6_A          320 DVVDEIREVFSTRGRGELDE  339 (386)
T ss_dssp             HHHHHHHHHHHHHTCCEECC
T ss_pred             hHHHHHHHHhhhcCcchhhh
Confidence            1 123344456666555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.52  E-value=7.8e-14  Score=139.03  Aligned_cols=154  Identities=23%  Similarity=0.346  Sum_probs=132.7

Q ss_pred             CCCCChhhhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccC
Q 038576            3 LLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISS   82 (411)
Q Consensus         3 l~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~   82 (411)
                      +..+| .+..+.+|+.|+|++|.+.....+..+++|++|+|++|.+..+| .++.+++|++|++++ +.+..++.  +..
T Consensus        55 i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~-N~l~~l~~--l~~  129 (605)
T 1m9s_A           55 IKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEH-NGISDING--LVH  129 (605)
T ss_dssp             CCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTT-SCCCCCGG--GGG
T ss_pred             CCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecC-CCCCCCcc--ccC
Confidence            45566 58999999999999999998334999999999999999999877 689999999999999 57887764  899


Q ss_pred             CCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcC
Q 038576           83 LSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWD  162 (411)
Q Consensus        83 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~  162 (411)
                      +++|+.|++++|.+..              ...+..+++|+.|++++|.+..+++ +..+++|+.|+++.+....++.+.
T Consensus       130 l~~L~~L~Ls~N~l~~--------------l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~l~  194 (605)
T 1m9s_A          130 LPQLESLYLGNNKITD--------------ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALA  194 (605)
T ss_dssp             CTTCSEEECCSSCCCC--------------CGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGGT
T ss_pred             CCccCEEECCCCccCC--------------chhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChHHc
Confidence            9999999999998753              2678899999999999999887766 889999999999988877777777


Q ss_pred             CccceeEEEecCCc
Q 038576          163 GISRISKLKLTNGA  176 (411)
Q Consensus       163 ~~~~l~~L~~~~~~  176 (411)
                      .+.+|+.|++..+.
T Consensus       195 ~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          195 GLKNLDVLELFSQE  208 (605)
T ss_dssp             TCTTCSEEECCSEE
T ss_pred             cCCCCCEEEccCCc
Confidence            78889999887643

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.51  E-value=4.2e-14  Score=117.61  Aligned_cols=136  Identities=18%  Similarity=0.263  Sum_probs=113.2

Q ss_pred             ccccCcEEEecCCcCC--C-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccc-cCcccccCCCCcc
Q 038576           12 LLQNLQTLSLDDCELG--D-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKV-IPPNVISSLSRLE   87 (411)
Q Consensus        12 ~l~~L~~L~l~~~~l~--~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~-~~~~~l~~L~~L~   87 (411)
                      ...+|++|++++|.++  . +..+..+++|++|++++|.++.+ ..++.+++|++|++++ +.+.. +|. .+..+++|+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~-N~l~~~~~~-~~~~l~~L~   98 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSE-NRIFGGLDM-LAEKLPNLT   98 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEES-CCCCSCCCH-HHHHCTTCC
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcC-CcCchHHHH-HHhhCCCCC
Confidence            3478999999999988  4 77789999999999999999987 6789999999999999 46666 554 377799999


Q ss_pred             EEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc----ccccCCCCcEEEEEecCCccccCc
Q 038576           88 ELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR----DLSFFKMLQRYRILIGDSREYDAW  161 (411)
Q Consensus        88 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~i~~~~~~~~~~~  161 (411)
                      +|++++|.+..  +         ..+..+..+++|++|++++|....++.    .+..+++|++|++..+.....++.
T Consensus        99 ~L~Ls~N~l~~--~---------~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A           99 HLNLSGNKLKD--I---------STLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             EEECBSSSCCS--S---------GGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             EEeccCCccCc--c---------hhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence            99999998864  1         123678899999999999999888887    678899999999987776655543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.49  E-value=3.1e-15  Score=140.52  Aligned_cols=60  Identities=13%  Similarity=0.027  Sum_probs=30.7

Q ss_pred             CCCcEEEecCCcCCcc-----CCCCCCC-CCCcCeEeecCCCCCccccc---hHhhhccccccEEeEcccc
Q 038576          239 KDLEKLSIFMCDNLTH-----LVPSSTS-FQNLTTLTVWGCHGMINVLT---SSTARSLVRLRQMTIKVCV  300 (411)
Q Consensus       239 ~~L~~L~l~~c~~l~~-----~~~~~~~-~~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~  300 (411)
                      ++|++|+++++. +..     +...... .++|+.|++++|. +++.+.   ......+++|+.|++++|.
T Consensus       196 ~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          196 ASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             TTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             CCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence            467777776643 222     1111111 3467777776663 433322   1223556777777777765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.49  E-value=1.1e-13  Score=129.73  Aligned_cols=142  Identities=20%  Similarity=0.246  Sum_probs=116.4

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC--Ccccc-ccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIG-DLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPP   77 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~-~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~   77 (411)
                      .++.+|..+.  ..+++|++++|.++.  +..+. ++++|++|++++|.++.++. .+.++++|++|++++ +.++.++.
T Consensus        29 ~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~  105 (361)
T 2xot_A           29 QLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS-NHLHTLDE  105 (361)
T ss_dssp             CCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEECT
T ss_pred             CcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC-CcCCcCCH
Confidence            4677887665  468999999999988  45566 89999999999999997764 588999999999999 67888887


Q ss_pred             ccccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCccc----ccCCCCcEEEEEec
Q 038576           78 NVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDL----SFFKMLQRYRILIG  153 (411)
Q Consensus        78 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l----~~~~~L~~L~i~~~  153 (411)
                      ..+..+++|++|++++|.+..            ..+..+.++++|++|++++|.+..+|..+    ..+++|+.|++..+
T Consensus       106 ~~~~~l~~L~~L~L~~N~i~~------------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N  173 (361)
T 2xot_A          106 FLFSDLQALEVLLLYNNHIVV------------VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN  173 (361)
T ss_dssp             TTTTTCTTCCEEECCSSCCCE------------ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred             HHhCCCcCCCEEECCCCcccE------------ECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence            778999999999999998865            34477889999999999999988888765    46889999998866


Q ss_pred             CCccc
Q 038576          154 DSREY  158 (411)
Q Consensus       154 ~~~~~  158 (411)
                      ....+
T Consensus       174 ~l~~l  178 (361)
T 2xot_A          174 KLKKL  178 (361)
T ss_dssp             CCCCC
T ss_pred             CCCcc
Confidence            65533

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.47  E-value=1.3e-13  Score=114.49  Aligned_cols=124  Identities=23%  Similarity=0.211  Sum_probs=105.2

Q ss_pred             CCChhhhccccCcEEEecCCcCCCCccccccccCcEEEeeCCcccc-chHHhcCCCCCCEEecCCCCCccccCc-ccccC
Q 038576            5 ALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEE-LAGEIGQLTQLRLLNLSKCFELKVIPP-NVISS   82 (411)
Q Consensus         5 ~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~-lp~~i~~l~~L~~L~L~~c~~~~~~~~-~~l~~   82 (411)
                      .+|..+..+.+|++|++++|.++....+..+++|++|++++|.++. +|..++++++|++|++++ +.++.++. ..+..
T Consensus        40 ~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~l~~  118 (168)
T 2ell_A           40 KIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG-NKLKDISTLEPLKK  118 (168)
T ss_dssp             BCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBS-SSCCSSGGGGGGSS
T ss_pred             hHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccC-CccCcchhHHHHhc
Confidence            7888889999999999999998887788899999999999999996 788888899999999999 57888762 33899


Q ss_pred             CCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc
Q 038576           83 LSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD  138 (411)
Q Consensus        83 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  138 (411)
                      +++|++|++++|.+..  ++.       .....+..+++|++|++++|....+|..
T Consensus       119 l~~L~~L~l~~N~l~~--~~~-------~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A          119 LECLKSLDLFNCEVTN--LND-------YRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             CSCCCEEECCSSGGGT--STT-------HHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             CCCCCEEEeeCCcCcc--hHH-------HHHHHHHhCccCcEecCCCCChhhcccc
Confidence            9999999999998864  110       0014788999999999999998877754

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.46  E-value=6.4e-13  Score=116.32  Aligned_cols=145  Identities=21%  Similarity=0.257  Sum_probs=122.1

Q ss_pred             CcEEEecCCcCCC-CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecc
Q 038576           16 LQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQ   93 (411)
Q Consensus        16 L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~   93 (411)
                      -+.++.+++.++. |..+.  ++|++|++++|.++.+ |..++++++|++|++++ +.++.++...+..+++|++|++++
T Consensus        21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGS-NQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCC-CCCCCcChhhcccCCCcCEEECCC
Confidence            5678999988888 76554  8999999999999976 56789999999999999 678999877689999999999999


Q ss_pred             cccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccC--cCCccceeEEE
Q 038576           94 SPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDA--WDGISRISKLK  171 (411)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~--~~~~~~l~~L~  171 (411)
                      |.+..            .....+..+++|++|++++|.+..+|..+..+++|++|++..+....++.  +....+++.|+
T Consensus        98 N~l~~------------l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  165 (229)
T 3e6j_A           98 NQLTV------------LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY  165 (229)
T ss_dssp             SCCCC------------CCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CcCCc------------cChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence            98864            23356789999999999999999999999999999999999887766654  33367777777


Q ss_pred             ecCC
Q 038576          172 LTNG  175 (411)
Q Consensus       172 ~~~~  175 (411)
                      +.++
T Consensus       166 l~~N  169 (229)
T 3e6j_A          166 LFGN  169 (229)
T ss_dssp             CTTS
T ss_pred             eeCC
Confidence            7553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.46  E-value=4.7e-13  Score=119.72  Aligned_cols=133  Identities=23%  Similarity=0.277  Sum_probs=114.8

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVI   80 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l   80 (411)
                      .++.+| .+..+.+|++|++++|.++. ++ +.++++|++|++++|.++.+|....  ++|++|++++ +.++.++.  +
T Consensus        52 ~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~-N~l~~~~~--l  124 (263)
T 1xeu_A           52 NIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDN-NELRDTDS--L  124 (263)
T ss_dssp             CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCS-SCCSBSGG--G
T ss_pred             Ccccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccC-CccCCChh--h
Confidence            356777 78999999999999999999 44 9999999999999999998876433  9999999999 58888764  8


Q ss_pred             cCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCc
Q 038576           81 SSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSR  156 (411)
Q Consensus        81 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~  156 (411)
                      +.+++|++|++++|.+..              ...+..+++|++|++++|.+..+ ..+..+++|+.|++..+...
T Consensus       125 ~~l~~L~~L~Ls~N~i~~--------------~~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          125 IHLKNLEILSIRNNKLKS--------------IVMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             TTCTTCCEEECTTSCCCB--------------CGGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEE
T ss_pred             cCcccccEEECCCCcCCC--------------ChHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCccc
Confidence            999999999999998853              24688899999999999998777 67788999999999876544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=9e-14  Score=116.54  Aligned_cols=133  Identities=16%  Similarity=0.151  Sum_probs=112.0

Q ss_pred             hhhccccCcEEEecCCcCCCCccccccc-cCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCcc
Q 038576            9 SLGLLQNLQTLSLDDCELGDMAIIGDLK-KLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLE   87 (411)
Q Consensus         9 ~l~~l~~L~~L~l~~~~l~~~~~l~~l~-~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~   87 (411)
                      .+.++.+|++|++++|.++..+.+..+. +|++|++++|.++.+ ..++.+++|++|++++ +.++.+|...++.+++|+
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNN-NRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCS-SCCCEECSCHHHHCTTCC
T ss_pred             hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCC-CcccccCcchhhcCCCCC
Confidence            3567889999999999998844566655 999999999999988 5789999999999999 688899877568999999


Q ss_pred             EEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc----cccCCCCcEEEEEecC
Q 038576           88 ELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD----LSFFKMLQRYRILIGD  154 (411)
Q Consensus        88 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~----l~~~~~L~~L~i~~~~  154 (411)
                      +|++++|.+..  ++         ....+..+++|++|++++|....+|..    +..+++|+.|++..+.
T Consensus        92 ~L~L~~N~i~~--~~---------~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           92 ELILTNNSLVE--LG---------DLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             EEECCSCCCCC--GG---------GGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             EEECCCCcCCc--ch---------hhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            99999998852  22         123788999999999999998888875    7889999999877544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.45  E-value=5.6e-15  Score=138.78  Aligned_cols=240  Identities=15%  Similarity=0.097  Sum_probs=138.1

Q ss_pred             ChhhhccccCcEEEecCCcCCC--C----ccccccc-cCcEEEeeCCccccc-hHHhcCC-----CCCCEEecCCCCCcc
Q 038576            7 PSSLGLLQNLQTLSLDDCELGD--M----AIIGDLK-KLVILALRGSDMEEL-AGEIGQL-----TQLRLLNLSKCFELK   73 (411)
Q Consensus         7 p~~l~~l~~L~~L~l~~~~l~~--~----~~l~~l~-~L~~L~L~~~~l~~l-p~~i~~l-----~~L~~L~L~~c~~~~   73 (411)
                      |..+....+|++|++++|.+++  +    ..+..++ +|++|++++|.++.. +..+..+     ++|++|++++| .++
T Consensus        15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~   93 (362)
T 3goz_A           15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLS   93 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGG
T ss_pred             HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-cCC
Confidence            3334455568888888888776  3    5566777 888888888887743 4444443     88888888884 566


Q ss_pred             ccCccc----ccCC-CCccEEEecccccccCccccccccccccchhhccCC-CCCCEEEEeeccCC-----cCCcccccC
Q 038576           74 VIPPNV----ISSL-SRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNL-SKLTSLEILIQDEK-----TLPRDLSFF  142 (411)
Q Consensus        74 ~~~~~~----l~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~-----~~~~~l~~~  142 (411)
                      ..+...    +..+ ++|++|++++|.+.. ..+       ......+..+ ++|++|++++|.+.     .++..+..+
T Consensus        94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~-------~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~  165 (362)
T 3goz_A           94 YKSSDELVKTLAAIPFTITVLDLGWNDFSS-KSS-------SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAI  165 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECCSSCGGG-SCH-------HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHhCCCCccEEECcCCcCCc-HHH-------HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcC
Confidence            554332    3344 788888888887754 000       0112234443 57888888888755     233333444


Q ss_pred             C-CCcEEEEEecCCccccCcCCccceeEEEecCCcccccccccccccccchhcccCCCcccccccc-chhhhchHhhhcc
Q 038576          143 K-MLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSF-KNVENGMEAMMRG  220 (411)
Q Consensus       143 ~-~L~~L~i~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~L~~L~~~~~~~  220 (411)
                      + +|++|+++.+......                            ...+.         ..+..+ ++|++|      +
T Consensus       166 ~~~L~~L~Ls~n~l~~~~----------------------------~~~l~---------~~l~~~~~~L~~L------~  202 (362)
T 3goz_A          166 PANVNSLNLRGNNLASKN----------------------------CAELA---------KFLASIPASVTSL------D  202 (362)
T ss_dssp             CTTCCEEECTTSCGGGSC----------------------------HHHHH---------HHHHTSCTTCCEE------E
T ss_pred             CccccEeeecCCCCchhh----------------------------HHHHH---------HHHHhCCCCCCEE------E
Confidence            4 7777776533321000                            00000         001123 478888      8


Q ss_pred             ccccccccc-----cccccccCCCCCcEEEecCCcCCccCC-----CCCCCCCCcCeEeecCCC--CCccccch---Hhh
Q 038576          221 INHRRELKQ-----IFKQESSNAKDLEKLSIFMCDNLTHLV-----PSSTSFQNLTTLTVWGCH--GMINVLTS---STA  285 (411)
Q Consensus       221 l~~~~~l~~-----~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~~~~~~L~~L~l~~c~--~l~~~~~~---~~~  285 (411)
                      ++++. +.+     +........++|++|+++++. +....     .....+++|+.|++++|.  .++.-...   ...
T Consensus       203 Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~  280 (362)
T 3goz_A          203 LSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF  280 (362)
T ss_dssp             CTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTS
T ss_pred             CCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHh
Confidence            88776 443     222111224689999999854 33221     122347889999998885  12111000   123


Q ss_pred             hccccccEEeEcccc
Q 038576          286 RSLVRLRQMTIKVCV  300 (411)
Q Consensus       286 ~~l~~L~~L~l~~c~  300 (411)
                      ..+++|+.|+++++.
T Consensus       281 ~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          281 PNIQKIILVDKNGKE  295 (362)
T ss_dssp             TTCCEEEEECTTSCB
T ss_pred             ccCCceEEEecCCCc
Confidence            456778888888765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.44  E-value=4e-13  Score=114.25  Aligned_cols=120  Identities=21%  Similarity=0.303  Sum_probs=60.3

Q ss_pred             cEEEecCCcCCC-CccccccccCcEEEeeCCccccchHH--hcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecc
Q 038576           17 QTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGE--IGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQ   93 (411)
Q Consensus        17 ~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~--i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~   93 (411)
                      ++++++++.++. |..+..  +|++|++++|.++.++..  ++++++|++|++++ +.++.++...++.+++|++|++++
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKR-NQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCC-CCCCCcCHhHcCCcccCCEEECCC
Confidence            455555555555 433322  555555555555544432  45555555555555 344444333355555555555555


Q ss_pred             cccccCccccccccccccchhhccCCCCCCEEEEeeccCCcC-CcccccCCCCcEEEEE
Q 038576           94 SPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTL-PRDLSFFKMLQRYRIL  151 (411)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~i~  151 (411)
                      |.+..            ..+..+..+++|++|++++|.+..+ |..+..+++|++|++.
T Consensus        88 N~l~~------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (192)
T 1w8a_A           88 NKIKE------------ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             CCCCE------------ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             CcCCc------------cCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence            55543            1223345555555555555554433 3344555555555554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.43  E-value=8.8e-13  Score=130.17  Aligned_cols=111  Identities=14%  Similarity=0.215  Sum_probs=79.4

Q ss_pred             cCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecc
Q 038576           15 NLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQ   93 (411)
Q Consensus        15 ~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~   93 (411)
                      +|++|++++|.++. |..+.  ++|++|++++|.++.+|   +.+++|++|++++ +.++.+|.  +.+  +|++|++++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~-N~l~~ip~--l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACD-NRLSTLPE--LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCS-SCCSCCCC--CCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccC-CCCCCcch--hhc--CCCEEECCC
Confidence            78888888888877 55453  67888888888888777   5578888888888 46777775  444  888888888


Q ss_pred             cccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecC
Q 038576           94 SPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGD  154 (411)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~  154 (411)
                      |.+..  +|           .   .+++|+.|++++|.+..+|.   .+++|+.|+++.+.
T Consensus       130 N~l~~--lp-----------~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~  171 (571)
T 3cvr_A          130 NQLTM--LP-----------E---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ  171 (571)
T ss_dssp             SCCSC--CC-----------C---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC
T ss_pred             CcCCC--CC-----------C---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC
Confidence            87653  22           2   56778888888887766665   45666666665333

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.42  E-value=5.1e-13  Score=116.16  Aligned_cols=118  Identities=17%  Similarity=0.285  Sum_probs=102.7

Q ss_pred             CCCCCh-hhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCCCCccccCcc
Q 038576            3 LLALPS-SLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVIPPN   78 (411)
Q Consensus         3 l~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~~~~   78 (411)
                      ++.+|. .|..+.+|++|++++|.++.  +..|.++++|++|++++|.++.+|.. +..+++|++|++++ +.++.++..
T Consensus        44 i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~  122 (220)
T 2v9t_B           44 IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNA-NKINCLRVD  122 (220)
T ss_dssp             CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTT
T ss_pred             CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCC-CCCCEeCHH
Confidence            455654 68999999999999999988  78899999999999999999988876 68899999999999 688888766


Q ss_pred             cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCC
Q 038576           79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEK  133 (411)
Q Consensus        79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  133 (411)
                      .+..+++|++|++++|.+..            .....+..+++|+++++++|...
T Consensus       123 ~~~~l~~L~~L~L~~N~l~~------------~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          123 AFQDLHNLNLLSLYDNKLQT------------IAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             TTTTCTTCCEEECCSSCCSC------------CCTTTTTTCTTCCEEECCSSCEE
T ss_pred             HcCCCCCCCEEECCCCcCCE------------ECHHHHhCCCCCCEEEeCCCCcC
Confidence            69999999999999999875            33356888999999999998743

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.42  E-value=1.3e-13  Score=112.12  Aligned_cols=125  Identities=16%  Similarity=0.260  Sum_probs=105.3

Q ss_pred             ccccCcEEEecCCcCC--C-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccc-cCcccccCCCCcc
Q 038576           12 LLQNLQTLSLDDCELG--D-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKV-IPPNVISSLSRLE   87 (411)
Q Consensus        12 ~l~~L~~L~l~~~~l~--~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~-~~~~~l~~L~~L~   87 (411)
                      ...+|+.|++++|.++  . +..++.+++|++|++++|.++.+ ..++++++|++|++++ +.+.. +|.. ++.+++|+
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~-n~i~~~~~~~-~~~l~~L~   91 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSD-NRVSGGLEVL-AEKCPNLT   91 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCS-SCCCSCTHHH-HHHCTTCC
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCC-CcccchHHHH-hhhCCCCC
Confidence            3478999999999988  4 77889999999999999999987 6789999999999999 56766 5543 77899999


Q ss_pred             EEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc----ccccCCCCcEEEE
Q 038576           88 ELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR----DLSFFKMLQRYRI  150 (411)
Q Consensus        88 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~i  150 (411)
                      +|++++|.+..  +         ..+..+..+++|++|++++|....++.    .+..+++|+.|++
T Consensus        92 ~L~ls~N~i~~--~---------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           92 HLNLSGNKIKD--L---------STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             EEECTTSCCCS--H---------HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             EEECCCCcCCC--h---------HHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            99999998764  1         123778999999999999999888776    5778899998865

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.40  E-value=1.2e-12  Score=111.33  Aligned_cols=123  Identities=16%  Similarity=0.227  Sum_probs=97.4

Q ss_pred             cEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccc
Q 038576           17 QTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSP   95 (411)
Q Consensus        17 ~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~   95 (411)
                      ++++++++.++. |..+.  .+|++|++++|.++.+|..+.++++|++|++++ +.++.++...+..+++|++|++++|.
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCC-CcCCEeCHhHccCCCCCCEEECCCCc
Confidence            678888888887 65543  588888888888888888888888888888888 67888876668888888888888888


Q ss_pred             cccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc-cccCCCCcEEEEEecC
Q 038576           96 IQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRILIGD  154 (411)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~i~~~~  154 (411)
                      +..            ..+..+..+++|++|++++|.+..++.. +..+++|+.|++..+.
T Consensus        90 l~~------------i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           90 LRC------------IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CCB------------CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCE------------eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence            764            3335678888888888888888777764 6678888888887544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.40  E-value=1.4e-12  Score=110.85  Aligned_cols=117  Identities=26%  Similarity=0.340  Sum_probs=100.7

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCccc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNV   79 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~   79 (411)
                      .++.+|..+.  .+|++|++++|.++. |..+.++++|++|++++|.++.++. .+.++++|++|++++ +.++.++...
T Consensus        21 ~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~   97 (193)
T 2wfh_A           21 GLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-NRLRCIPPRT   97 (193)
T ss_dssp             CCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTT
T ss_pred             CCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC-CccCEeCHHH
Confidence            4677887664  589999999999998 8899999999999999999997764 589999999999999 6888888777


Q ss_pred             ccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCC
Q 038576           80 ISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEK  133 (411)
Q Consensus        80 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  133 (411)
                      +..+++|++|++++|.+..            .....+..+++|+.+++.+|...
T Consensus        98 f~~l~~L~~L~L~~N~l~~------------~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           98 FDGLKSLRLLSLHGNDISV------------VPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             TTTCTTCCEEECCSSCCCB------------CCTTTTTTCTTCCEEECCSSCEE
T ss_pred             hCCCCCCCEEECCCCCCCe------------eChhhhhcCccccEEEeCCCCee
Confidence            9999999999999998864            22356888999999999988643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.40  E-value=1.1e-12  Score=114.08  Aligned_cols=118  Identities=15%  Similarity=0.220  Sum_probs=101.3

Q ss_pred             CCCCC--hhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCc
Q 038576            3 LLALP--SSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPP   77 (411)
Q Consensus         3 l~~lp--~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~   77 (411)
                      ++.++  ..|.++.+|++|++++|.++.  +..|.++++|++|++++|.++.++. .++.+++|++|++++ +.+..++.
T Consensus        44 l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~  122 (220)
T 2v70_A           44 FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS-NRITCVGN  122 (220)
T ss_dssp             CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTT-SCCCCBCT
T ss_pred             CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCC-CcCCeECH
Confidence            44553  348999999999999999998  4589999999999999999997765 488999999999999 67888865


Q ss_pred             ccccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCC
Q 038576           78 NVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEK  133 (411)
Q Consensus        78 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  133 (411)
                      ..+..+++|++|++++|.+..            ..+..+..+++|++|++++|...
T Consensus       123 ~~~~~l~~L~~L~L~~N~l~~------------~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          123 DSFIGLSSVRLLSLYDNQITT------------VAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             TSSTTCTTCSEEECTTSCCCC------------BCTTTTTTCTTCCEEECCSCCEE
T ss_pred             hHcCCCccCCEEECCCCcCCE------------ECHHHhcCCCCCCEEEecCcCCc
Confidence            559999999999999999875            34578889999999999998743

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.38  E-value=2.7e-12  Score=110.47  Aligned_cols=131  Identities=22%  Similarity=0.302  Sum_probs=107.8

Q ss_pred             CCCCChh-hhccccCcEEEecCCcCCC-C-ccccccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCCCCccccCcc
Q 038576            3 LLALPSS-LGLLQNLQTLSLDDCELGD-M-AIIGDLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVIPPN   78 (411)
Q Consensus         3 l~~lp~~-l~~l~~L~~L~l~~~~l~~-~-~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~~~~   78 (411)
                      ++.+|.. +.++.+|++|++++|.++. + ..+..+++|++|++++|.++.+|.. ++++++|++|++++ +.++.++..
T Consensus        40 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~  118 (208)
T 2o6s_A           40 LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT-NQLQSLPDG  118 (208)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTT
T ss_pred             cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC-CcCcccCHh
Confidence            4566654 7899999999999999988 4 5578999999999999999988765 68999999999999 688888877


Q ss_pred             cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEe
Q 038576           79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILI  152 (411)
Q Consensus        79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~  152 (411)
                      .+..+++|++|++++|.+..            .....+.++++|+++++++|...      +.+++|+.|.++.
T Consensus       119 ~~~~l~~L~~L~l~~N~l~~------------~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~  174 (208)
T 2o6s_A          119 VFDKLTQLKDLRLYQNQLKS------------VPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWI  174 (208)
T ss_dssp             TTTTCTTCCEEECCSSCCSC------------CCTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHH
T ss_pred             HhccCCcCCEEECCCCccce------------eCHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHH
Confidence            68899999999999998764            22355788999999999998543      3456677766543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.37  E-value=5.9e-13  Score=108.23  Aligned_cols=113  Identities=22%  Similarity=0.207  Sum_probs=95.2

Q ss_pred             CCChhhhccccCcEEEecCCcCCCCccccccccCcEEEeeCCcccc-chHHhcCCCCCCEEecCCCCCccccC--ccccc
Q 038576            5 ALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEE-LAGEIGQLTQLRLLNLSKCFELKVIP--PNVIS   81 (411)
Q Consensus         5 ~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~-lp~~i~~l~~L~~L~L~~c~~~~~~~--~~~l~   81 (411)
                      .+|..+..+.+|++|++++|.++....++.+++|++|++++|.++. +|..++++++|++|++++ +.++.++  .. ++
T Consensus        33 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~-N~i~~~~~~~~-~~  110 (149)
T 2je0_A           33 KLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG-NKIKDLSTIEP-LK  110 (149)
T ss_dssp             BCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTT-SCCCSHHHHGG-GG
T ss_pred             HHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCC-CcCCChHHHHH-Hh
Confidence            7888889999999999999998887788999999999999999996 888888899999999999 5788764  44 89


Q ss_pred             CCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEe
Q 038576           82 SLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEIL  128 (411)
Q Consensus        82 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  128 (411)
                      .+++|++|++++|.+..  ++.       .....+..+++|++|+++
T Consensus       111 ~l~~L~~L~l~~N~l~~--~~~-------~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          111 KLENLKSLDLFNCEVTN--LND-------YRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             GCTTCCEEECTTCGGGG--STT-------HHHHHHHHCTTCCEETTB
T ss_pred             hCCCCCEEeCcCCcccc--hHH-------HHHHHHHHCCCcccccCC
Confidence            99999999999998864  110       001468889999998764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.36  E-value=1.1e-14  Score=124.70  Aligned_cols=133  Identities=18%  Similarity=0.243  Sum_probs=104.8

Q ss_pred             CCCCChhhhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccC
Q 038576            3 LLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISS   82 (411)
Q Consensus         3 l~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~   82 (411)
                      ++.+|..+.++.+|++|++++|.++..+.+..+++|++|++++|.++.+|..++.+++|++|++++ +.++.+| . +..
T Consensus        37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~-N~l~~l~-~-~~~  113 (198)
T 1ds9_A           37 IEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY-NQIASLS-G-IEK  113 (198)
T ss_dssp             CCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE-EECCCHH-H-HHH
T ss_pred             HhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC-CcCCcCC-c-ccc
Confidence            566777889999999999999988883388888999999999998888888888888999999998 5777777 3 788


Q ss_pred             CCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc-----------cccCCCCcEEE
Q 038576           83 LSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-----------LSFFKMLQRYR  149 (411)
Q Consensus        83 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-----------l~~~~~L~~L~  149 (411)
                      +++|++|++++|.+..  ++         ....+..+++|+++++++|.....++.           +..+++|+.|+
T Consensus       114 l~~L~~L~l~~N~i~~--~~---------~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          114 LVNLRVLYMSNNKITN--WG---------EIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHSSEEEESEEECCC--HH---------HHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CCCCCEEECCCCcCCc--hh---------HHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            8999999999988753  11         124678889999999998875443221           56778888775

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.35  E-value=5.3e-12  Score=124.59  Aligned_cols=123  Identities=17%  Similarity=0.216  Sum_probs=102.4

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVI   80 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l   80 (411)
                      .++.+|..+.  .+|++|++++|.++. |   +.+++|++|++++|.++.+|. +.+  +|++|++++ +.++.+|.   
T Consensus        70 ~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~-N~l~~lp~---  137 (571)
T 3cvr_A           70 NLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN-NQLTMLPE---  137 (571)
T ss_dssp             CCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS-SCCSCCCC---
T ss_pred             CCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC-CcCCCCCC---
Confidence            4567887663  789999999999998 6   567999999999999999988 665  999999999 67888886   


Q ss_pred             cCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCc
Q 038576           81 SSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSR  156 (411)
Q Consensus        81 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~  156 (411)
                       .+++|++|++++|.+..  +|           .   .+++|++|++++|.+..+|. +.  ++|+.|+++.+...
T Consensus       138 -~l~~L~~L~Ls~N~l~~--lp-----------~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          138 -LPALLEYINADNNQLTM--LP-----------E---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             -CCTTCCEEECCSSCCSC--CC-----------C---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS
T ss_pred             -cCccccEEeCCCCccCc--CC-----------C---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC
Confidence             68999999999998863  22           2   57899999999999888888 54  88898888755433

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.35  E-value=2.4e-12  Score=109.37  Aligned_cols=117  Identities=24%  Similarity=0.371  Sum_probs=101.6

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC-Cc--cccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD-MA--IIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPP   77 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~-~~--~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~   77 (411)
                      .++.+|..+..  +|++|++++|.++. +.  .++.+++|++|++++|.++.+ |..++++++|++|++++ +.++.++.
T Consensus        19 ~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~   95 (192)
T 1w8a_A           19 GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-NKIKEISN   95 (192)
T ss_dssp             CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-CCCCEECS
T ss_pred             CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC-CcCCccCH
Confidence            46788877654  99999999999988 43  489999999999999999976 67899999999999999 68888887


Q ss_pred             ccccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCC
Q 038576           78 NVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEK  133 (411)
Q Consensus        78 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  133 (411)
                      ..++.+++|++|++++|.+..            ..+..+..+++|++|++++|.+.
T Consensus        96 ~~~~~l~~L~~L~L~~N~l~~------------~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           96 KMFLGLHQLKTLNLYDNQISC------------VMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SSSTTCTTCCEEECCSSCCCE------------ECTTSSTTCTTCCEEECTTCCBC
T ss_pred             HHhcCCCCCCEEECCCCcCCe------------eCHHHhhcCCCCCEEEeCCCCcc
Confidence            778999999999999999875            34578889999999999998754

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.34  E-value=4e-12  Score=106.48  Aligned_cols=124  Identities=21%  Similarity=0.303  Sum_probs=67.9

Q ss_pred             CcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecc
Q 038576           16 LQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQ   93 (411)
Q Consensus        16 L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~   93 (411)
                      .+.++++++.++. |..+.  ++|++|++++|.++.+|.. ++++++|++|++++ +.++.++...++.+++|++|++++
T Consensus         9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQ-NQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCC-CcceEeChhHccCCCccCEEECCC
Confidence            3455666655555 43322  4566666666666555433 45566666666666 355555554455666666666666


Q ss_pred             cccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCccc-ccCCCCcEEEEEecC
Q 038576           94 SPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDL-SFFKMLQRYRILIGD  154 (411)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~i~~~~  154 (411)
                      |.+..            .....+..+++|++|++++|.+..+|... ..+++|++|++..+.
T Consensus        86 N~l~~------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           86 NKLQS------------LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             SCCCC------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCccc------------cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence            65543            12233455666666666666655555542 445666666665443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.34  E-value=2.1e-12  Score=121.03  Aligned_cols=129  Identities=17%  Similarity=0.174  Sum_probs=105.4

Q ss_pred             CcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHH-hc-CCCCCCEEecCCCCCccccCcccccCCCCccEEEec
Q 038576           16 LQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGE-IG-QLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIG   92 (411)
Q Consensus        16 L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~-i~-~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~   92 (411)
                      -+.++.+++.++. |..+.  ..+++|++++|.++.++.. +. ++++|++|++++ +.+..++...+..+++|++|+++
T Consensus        20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSH-NHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCC-CcCCccChhhccCCCCCCEEECC
Confidence            3689999999988 76554  4689999999999988765 55 899999999999 68888887669999999999999


Q ss_pred             ccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcC-CcccccCCCCcEEEEEecCCcccc
Q 038576           93 QSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTL-PRDLSFFKMLQRYRILIGDSREYD  159 (411)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~i~~~~~~~~~  159 (411)
                      +|.+..            .....+.++++|++|++++|.+..+ +..+..+++|++|++..+....++
T Consensus        97 ~N~l~~------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~  152 (361)
T 2xot_A           97 SNHLHT------------LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP  152 (361)
T ss_dssp             SSCCCE------------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred             CCcCCc------------CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence            998864            2335688899999999999997776 456778899999988766655444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.34  E-value=3e-12  Score=126.78  Aligned_cols=119  Identities=18%  Similarity=0.219  Sum_probs=100.0

Q ss_pred             cCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecc
Q 038576           15 NLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQ   93 (411)
Q Consensus        15 ~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~   93 (411)
                      .|++|++++|.++. |. ++.+++|++|++++|.++.+|..++++++|++|++++ +.++.+| . ++.+++|++|++++
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp-~-l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVD-G-VANLPRLQELLLCN  517 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCG-G-GTTCSSCCEEECCS
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCC-CCCCCCc-c-cCCCCCCcEEECCC
Confidence            58899999999888 54 8999999999999999999999999999999999999 6788888 4 89999999999999


Q ss_pred             cccccCccccccccccccc-hhhccCCCCCCEEEEeeccCCcCCccc----ccCCCCcEEE
Q 038576           94 SPIQWGKVEGVDGERRNAS-LDELNNLSKLTSLEILIQDEKTLPRDL----SFFKMLQRYR  149 (411)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~l----~~~~~L~~L~  149 (411)
                      |.+..            .. +..++.+++|+.|++++|.+..+|+..    ..+++|+.|+
T Consensus       518 N~l~~------------~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          518 NRLQQ------------SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             SCCCS------------SSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCC------------CCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            98865            22 578889999999999999877776643    2367888774

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.28  E-value=4.6e-12  Score=117.19  Aligned_cols=101  Identities=12%  Similarity=0.063  Sum_probs=61.9

Q ss_pred             CCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCC-eeecCCCcCCce
Q 038576          262 FQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELK-ELNLSNLQSLTS  340 (411)
Q Consensus       262 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~c~~l~~  340 (411)
                      +++|+.+++.++. ++.++. ....++++|+.|++.+.  ++.+...           .+..+++|+ .+.+.+  +++.
T Consensus       225 ~~~L~~l~L~~n~-i~~I~~-~aF~~~~~L~~l~l~~n--i~~I~~~-----------aF~~~~~L~~~l~l~~--~l~~  287 (329)
T 3sb4_A          225 MPNLVSLDISKTN-ATTIPD-FTFAQKKYLLKIKLPHN--LKTIGQR-----------VFSNCGRLAGTLELPA--SVTA  287 (329)
T ss_dssp             CTTCCEEECTTBC-CCEECT-TTTTTCTTCCEEECCTT--CCEECTT-----------TTTTCTTCCEEEEECT--TCCE
T ss_pred             cCCCeEEECCCCC-cceecH-hhhhCCCCCCEEECCcc--cceehHH-----------HhhCChhccEEEEEcc--cceE
Confidence            5667777776543 555533 34566777777777663  5555332           344567777 777776  6666


Q ss_pred             eccCCCcccccCCCcceEeecCCCCCccccCCC-CCCCCceEEE
Q 038576          341 FSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGE-LSTPKLQKVQ  383 (411)
Q Consensus       341 ~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~-~~~~~L~~l~  383 (411)
                      +  ...+. .+|++|++|++.+ ++++.++... ..+++|+.|+
T Consensus       288 I--~~~aF-~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          288 I--EFGAF-MGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             E--CTTTT-TTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred             E--chhhh-hCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence            6  22222 4577888887765 4677776643 3677777765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.27  E-value=2.6e-11  Score=101.44  Aligned_cols=119  Identities=20%  Similarity=0.346  Sum_probs=98.5

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCCCCccccCcc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVIPPN   78 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~~~~   78 (411)
                      .++.+|..+.  .+|++|++++|.++.  +..++.+++|++|++++|.++.+|.. ++.+++|++|++++ +.++.++..
T Consensus        18 ~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~   94 (177)
T 2o6r_A           18 GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE-NKLQSLPNG   94 (177)
T ss_dssp             CCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTT
T ss_pred             CCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC-CCccccCHH
Confidence            3667776554  689999999999888  45678999999999999999988765 68999999999999 688888877


Q ss_pred             cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcC
Q 038576           79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTL  135 (411)
Q Consensus        79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  135 (411)
                      .++.+++|++|++++|.+..            .....+..+++|+++++++|.....
T Consensus        95 ~~~~l~~L~~L~l~~N~l~~------------~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           95 VFDKLTQLKELALDTNQLKS------------VPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             TTTTCTTCCEEECCSSCCSC------------CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             HhhCCcccCEEECcCCcceE------------eCHHHhcCCcccCEEEecCCCeecc
Confidence            67899999999999998864            2224568899999999999976543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.25  E-value=7.2e-12  Score=104.81  Aligned_cols=119  Identities=17%  Similarity=0.226  Sum_probs=96.4

Q ss_pred             CCCCChhhhccc-cCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHh-cCCCCCCEEecCCCCCccccCc-cc
Q 038576            3 LLALPSSLGLLQ-NLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEI-GQLTQLRLLNLSKCFELKVIPP-NV   79 (411)
Q Consensus         3 l~~lp~~l~~l~-~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i-~~l~~L~~L~L~~c~~~~~~~~-~~   79 (411)
                      ++.+|. +..+. +|++|++++|.++..+.++.+++|++|++++|.++.+|..+ +.+++|++|++++ +.++.+|. ..
T Consensus        31 l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~  108 (176)
T 1a9n_A           31 IPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN-NSLVELGDLDP  108 (176)
T ss_dssp             CCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS-CCCCCGGGGGG
T ss_pred             CchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC-CcCCcchhhHh
Confidence            456654 55555 99999999999888778899999999999999999888654 8999999999999 57888886 23


Q ss_pred             ccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccC
Q 038576           80 ISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDE  132 (411)
Q Consensus        80 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  132 (411)
                      ++.+++|++|++++|.+..  ++.       .....+..+++|+.++++.+..
T Consensus       109 l~~l~~L~~L~l~~N~i~~--~~~-------~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          109 LASLKSLTYLCILRNPVTN--KKH-------YRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             GGGCTTCCEEECCSSGGGG--STT-------HHHHHHHHCTTCSEETTEECCH
T ss_pred             hhcCCCCCEEEecCCCCCC--cHh-------HHHHHHHHCCccceeCCCcCCH
Confidence            8899999999999998753  220       0012478899999999998863

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.24  E-value=2e-11  Score=120.83  Aligned_cols=112  Identities=21%  Similarity=0.211  Sum_probs=95.3

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCcccc--Ccc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVI--PPN   78 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~--~~~   78 (411)
                      .++.+|. ++++.+|++|++++|.++. |..++++++|++|++++|.++.+| .++++++|++|++++ +.++.+  |..
T Consensus       452 ~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~-N~l~~~~~p~~  528 (567)
T 1dce_A          452 DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN-NRLQQSAAIQP  528 (567)
T ss_dssp             CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS-SCCCSSSTTGG
T ss_pred             CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC-CCCCCCCCcHH
Confidence            4677887 9999999999999999999 899999999999999999999998 899999999999999 688888  665


Q ss_pred             cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEE
Q 038576           79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLE  126 (411)
Q Consensus        79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  126 (411)
                       ++.+++|++|++++|.+..  ++.       .....+..+++|+.|+
T Consensus       529 -l~~l~~L~~L~L~~N~l~~--~~~-------~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          529 -LVSCPRLVLLNLQGNSLCQ--EEG-------IQERLAEMLPSVSSIL  566 (567)
T ss_dssp             -GGGCTTCCEEECTTSGGGG--SSS-------CTTHHHHHCTTCSEEE
T ss_pred             -HhcCCCCCEEEecCCcCCC--Ccc-------HHHHHHHHCcccCccC
Confidence             9999999999999998864  220       1223344578888875

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.24  E-value=5.5e-12  Score=128.77  Aligned_cols=114  Identities=26%  Similarity=0.240  Sum_probs=87.2

Q ss_pred             CChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCC
Q 038576            6 LPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLS   84 (411)
Q Consensus         6 lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~   84 (411)
                      .|..+..+..|++|+|++|.+.. +..+.++++|++|+|++|.++.+|..++++++|++|+|++ +.++.+|.. ++.|+
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp~~-~~~l~  293 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPAE-LGSCF  293 (727)
T ss_dssp             ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTT-SCCSSCCSS-GGGGT
T ss_pred             ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcC-CcCCccChh-hcCCC
Confidence            35667788888888888888877 7777788888888888888888888888888888888888 567788876 78888


Q ss_pred             CccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCc
Q 038576           85 RLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKT  134 (411)
Q Consensus        85 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  134 (411)
                      +|++|++++|.+..             .+..++++++|++|++++|.+..
T Consensus       294 ~L~~L~L~~N~l~~-------------lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          294 QLKYFYFFDNMVTT-------------LPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             TCSEEECCSSCCCC-------------CCSSTTSCTTCCCEECTTSCCCS
T ss_pred             CCCEEECCCCCCCc-------------cChhhhcCCCccEEeCCCCccCC
Confidence            88888888887652             33568888888888888887553

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.23  E-value=4.8e-11  Score=99.52  Aligned_cols=109  Identities=21%  Similarity=0.278  Sum_probs=89.6

Q ss_pred             CcEEEecCCcCCC-CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecc
Q 038576           16 LQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQ   93 (411)
Q Consensus        16 L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~   93 (411)
                      -+.++++++.++. |..+.  .+|++|++++|.++.+ |..++++++|++|++++ +.++.+|..++.++++|++|++++
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEECCC
Confidence            4789999999888 76664  7999999999999977 55688999999999999 689999887678999999999999


Q ss_pred             cccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCccc
Q 038576           94 SPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDL  139 (411)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l  139 (411)
                      |.+..            .....+..+++|++|++++|.+...+..+
T Consensus        91 N~l~~------------l~~~~~~~l~~L~~L~L~~N~~~c~~~~~  124 (174)
T 2r9u_A           91 NHLKS------------IPRGAFDNLKSLTHIYLYNNPWDCECRDI  124 (174)
T ss_dssp             SCCCC------------CCTTTTTTCTTCSEEECCSSCBCTTBGGG
T ss_pred             Cccce------------eCHHHhccccCCCEEEeCCCCcccccccH
Confidence            98864            22245888999999999999877665533

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.22  E-value=2.8e-11  Score=100.99  Aligned_cols=93  Identities=24%  Similarity=0.414  Sum_probs=83.9

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCCCCccccCcc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVIPPN   78 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~~~~   78 (411)
                      .++.+|..+.  .+|++|++++|.++.  +..|.++++|++|++++|.++.+|.. ++++++|++|++++ +.++.+|..
T Consensus        23 ~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~~   99 (174)
T 2r9u_A           23 RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-NHLKSIPRG   99 (174)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTT
T ss_pred             CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-CccceeCHH
Confidence            4678888775  799999999999988  67899999999999999999999876 58999999999999 789999987


Q ss_pred             cccCCCCccEEEecccccc
Q 038576           79 VISSLSRLEELYIGQSPIQ   97 (411)
Q Consensus        79 ~l~~L~~L~~L~l~~~~~~   97 (411)
                      .+..+++|++|++++|.+.
T Consensus       100 ~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A          100 AFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             TTTTCTTCSEEECCSSCBC
T ss_pred             HhccccCCCEEEeCCCCcc
Confidence            7899999999999999875

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.22  E-value=5.3e-11  Score=98.86  Aligned_cols=108  Identities=23%  Similarity=0.295  Sum_probs=89.0

Q ss_pred             cCcEEEecCCcCCC-CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEec
Q 038576           15 NLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIG   92 (411)
Q Consensus        15 ~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~   92 (411)
                      ..++++++++.++. |..+.  .+|++|++++|.++.+ |..++++++|++|++++ +.++.+|..++..+++|++|+++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCC-CCcCccChhhccCCCCCCEEECC
Confidence            46789999999988 76663  7899999999999977 55688999999999999 68889988767899999999999


Q ss_pred             ccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc
Q 038576           93 QSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR  137 (411)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  137 (411)
                      +|.+..            .....+.++++|++|++++|.+...+.
T Consensus        87 ~N~l~~------------~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKS------------IPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCC------------CCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCE------------eCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            998864            223568889999999999987655443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.20  E-value=4.5e-11  Score=99.31  Aligned_cols=93  Identities=26%  Similarity=0.418  Sum_probs=83.5

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCCCCccccCcc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVIPPN   78 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~~~~   78 (411)
                      .++.+|..+.  .+|++|++++|.++.  +..|.++++|++|++++|+++.+|.. +.++++|++|++++ +.++.++..
T Consensus        20 ~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~   96 (170)
T 3g39_A           20 SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND-NQLKSIPRG   96 (170)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTT
T ss_pred             CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-CccCEeCHH
Confidence            4678887764  799999999999988  67799999999999999999988875 68999999999999 689999887


Q ss_pred             cccCCCCccEEEecccccc
Q 038576           79 VISSLSRLEELYIGQSPIQ   97 (411)
Q Consensus        79 ~l~~L~~L~~L~l~~~~~~   97 (411)
                      ++..+++|++|++++|.+.
T Consensus        97 ~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           97 AFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             TTTTCTTCCEEECCSSCBC
T ss_pred             HhcCCCCCCEEEeCCCCCC
Confidence            7999999999999999875

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.17  E-value=2e-11  Score=124.69  Aligned_cols=113  Identities=19%  Similarity=0.120  Sum_probs=98.6

Q ss_pred             CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccccccCccccccccc
Q 038576           29 MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGER  108 (411)
Q Consensus        29 ~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~  108 (411)
                      +..+..+.+|++|+|++|.+..+|..+.++++|++|+|++ +.++.+|.. ++.+++|++|++++|.+..          
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~-N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~----------  284 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNG-NSLTELPAE-IKNLSNLRVLDLSHNRLTS----------  284 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTT-SCCSCCCGG-GGGGTTCCEEECTTSCCSS----------
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeC-CcCcccChh-hhCCCCCCEEeCcCCcCCc----------
Confidence            5678889999999999999999999999999999999999 578899977 8999999999999999863          


Q ss_pred             cccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCc
Q 038576          109 RNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSR  156 (411)
Q Consensus       109 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~  156 (411)
                         .+..++++++|++|++++|.+..+|..++.+++|+.|++..+...
T Consensus       285 ---lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          285 ---LPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             ---CCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred             ---cChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence               347889999999999999999999999999999999999877654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.16  E-value=4.9e-10  Score=103.52  Aligned_cols=103  Identities=11%  Similarity=0.017  Sum_probs=69.9

Q ss_pred             CCCCCcEEEecCCcCCccCC-CCCCCCCCcCeEeecCCCCCccccchHhhhcccccc-EEeEcccccccccccccCCCCC
Q 038576          237 NAKDLEKLSIFMCDNLTHLV-PSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLR-QMTIKVCVMITEIVADEDDEGD  314 (411)
Q Consensus       237 ~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~-~L~l~~c~~l~~~~~~~~~~~~  314 (411)
                      .+++|+++++.++. +.... .....+++|+++++.++  ++.++. ....++++|+ .+++.+  .++.+...      
T Consensus       224 ~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~-~aF~~~~~L~~~l~l~~--~l~~I~~~------  291 (329)
T 3sb4_A          224 YMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQ-RVFSNCGRLAGTLELPA--SVTAIEFG------  291 (329)
T ss_dssp             HCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEECT-TTTTTCTTCCEEEEECT--TCCEECTT------
T ss_pred             hcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceehH-HHhhCChhccEEEEEcc--cceEEchh------
Confidence            37889999998643 43333 23445889999999875  777744 3467889999 999987  46666443      


Q ss_pred             CccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEee
Q 038576          315 NYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVV  360 (411)
Q Consensus       315 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i  360 (411)
                           .+..+++|+.+++.. .+++.++  ..+. .++++|+.|+.
T Consensus       292 -----aF~~c~~L~~l~l~~-n~i~~I~--~~aF-~~~~~L~~ly~  328 (329)
T 3sb4_A          292 -----AFMGCDNLRYVLATG-DKITTLG--DELF-GNGVPSKLIYK  328 (329)
T ss_dssp             -----TTTTCTTEEEEEECS-SCCCEEC--TTTT-CTTCCCCEEEC
T ss_pred             -----hhhCCccCCEEEeCC-CccCccc--hhhh-cCCcchhhhcc
Confidence                 445688999999866 4678872  2222 45777877753

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.08  E-value=1.6e-12  Score=110.99  Aligned_cols=127  Identities=21%  Similarity=0.252  Sum_probs=99.4

Q ss_pred             hhccccCcEEEecCCcCCC--------CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCccccc
Q 038576           10 LGLLQNLQTLSLDDCELGD--------MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVIS   81 (411)
Q Consensus        10 l~~l~~L~~L~l~~~~l~~--------~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~   81 (411)
                      +.....++.++++++.+..        +..++.+++|++|++++|.++.+| .++++++|++|++++ +.++.+|.. +.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~-n~l~~l~~~-~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGR-NLIKKIENL-DA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEE-EEECSCSSH-HH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCC-CCcccccch-hh
Confidence            3344555555555555443        337889999999999999999888 888999999999999 578888864 77


Q ss_pred             CCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc--ccccCCCCcEEEEEec
Q 038576           82 SLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR--DLSFFKMLQRYRILIG  153 (411)
Q Consensus        82 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~i~~~  153 (411)
                      .+++|++|++++|.+..              ...+..+++|++|++++|.+..++.  .+..+++|++|++..+
T Consensus        91 ~~~~L~~L~L~~N~l~~--------------l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A           91 VADTLEELWISYNQIAS--------------LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             HHHHCSEEEEEEEECCC--------------HHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred             cCCcCCEEECcCCcCCc--------------CCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence            78999999999998753              2367788899999999998877654  6778899999988644

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.96  E-value=1.4e-09  Score=101.26  Aligned_cols=91  Identities=26%  Similarity=0.272  Sum_probs=52.0

Q ss_pred             CCCCChhhhccccCcEEEecC-CcCCC-C-ccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcc
Q 038576            3 LLALPSSLGLLQNLQTLSLDD-CELGD-M-AIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPN   78 (411)
Q Consensus         3 l~~lp~~l~~l~~L~~L~l~~-~~l~~-~-~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~   78 (411)
                      ++.+|. |..+.+|++|+|++ |.++. + ..|+++++|++|+|++|.|+.+|+ .|+++++|++|+|++ +.+..+|..
T Consensus        21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~   98 (347)
T 2ifg_A           21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NALESLSWK   98 (347)
T ss_dssp             CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SCCSCCCST
T ss_pred             CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-CccceeCHH
Confidence            455665 66666666666664 55555 2 445666666666666666664433 355666666666666 455555554


Q ss_pred             cccCCCCccEEEeccccc
Q 038576           79 VISSLSRLEELYIGQSPI   96 (411)
Q Consensus        79 ~l~~L~~L~~L~l~~~~~   96 (411)
                      .+..++ |++|++.+|.+
T Consensus        99 ~~~~~~-L~~l~l~~N~~  115 (347)
T 2ifg_A           99 TVQGLS-LQELVLSGNPL  115 (347)
T ss_dssp             TTCSCC-CCEEECCSSCC
T ss_pred             HcccCC-ceEEEeeCCCc
Confidence            343343 66666666554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.81  E-value=1.7e-07  Score=88.73  Aligned_cols=123  Identities=13%  Similarity=0.162  Sum_probs=79.6

Q ss_pred             hhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccch-HHhcCCCCCCEEecCCCCCccccCcccccCCCC
Q 038576            9 SLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELA-GEIGQLTQLRLLNLSKCFELKVIPPNVISSLSR   85 (411)
Q Consensus         9 ~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~   85 (411)
                      .|.++ +|+.+.+..+ ++.  ...|.++ +|+.+.+.. .++.++ ..+.+|++|+.+++.+ +.++.++..++. ..+
T Consensus       131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~-~~~  204 (401)
T 4fdw_A          131 AFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFV-YAG  204 (401)
T ss_dssp             TTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTT-TCC
T ss_pred             hcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCC-CcceEechhhEe-ecc
Confidence            36665 6888888765 444  3455553 688888876 555554 3477888888888887 578888777665 578


Q ss_pred             ccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEE
Q 038576           86 LEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRIL  151 (411)
Q Consensus        86 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~  151 (411)
                      |+.+.+..+ +..  +          ....+.++++|+.+++..+ ...+......-.+|+.+.+.
T Consensus       205 L~~l~lp~~-l~~--I----------~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp  256 (401)
T 4fdw_A          205 IEEVLLPVT-LKE--I----------GSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLP  256 (401)
T ss_dssp             CSEEECCTT-CCE--E----------CTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEE
T ss_pred             cCEEEeCCc-hhe--e----------hhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeC
Confidence            888888654 221  2          2366777788888887653 33333332223677877774

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.80  E-value=1.2e-08  Score=94.78  Aligned_cols=102  Identities=19%  Similarity=0.263  Sum_probs=78.1

Q ss_pred             EEEecCC-cCCC-CccccccccCcEEEeeC-Cccccch-HHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecc
Q 038576           18 TLSLDDC-ELGD-MAIIGDLKKLVILALRG-SDMEELA-GEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQ   93 (411)
Q Consensus        18 ~L~l~~~-~l~~-~~~l~~l~~L~~L~L~~-~~l~~lp-~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~   93 (411)
                      .++.+++ .++. |. +..+.+|++|+|++ |.++.+| ..++++++|++|+|++ +.+..++...|..+++|++|++++
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC-CccceeCHHHhcCCcCCCEEeCCC
Confidence            4688887 7888 77 88888999999986 8888776 4588899999999998 578888776688899999999998


Q ss_pred             cccccCccccccccccccchhhccCCCCCCEEEEeeccCCc
Q 038576           94 SPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKT  134 (411)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  134 (411)
                      |.+..  ++          ...+..+. |+.|++.+|.+..
T Consensus        90 N~l~~--~~----------~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           90 NALES--LS----------WKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SCCSC--CC----------STTTCSCC-CCEEECCSSCCCC
T ss_pred             Cccce--eC----------HHHcccCC-ceEEEeeCCCccC
Confidence            88764  22          13344444 8888888776543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.76  E-value=2.4e-07  Score=87.63  Aligned_cols=130  Identities=15%  Similarity=0.056  Sum_probs=67.6

Q ss_pred             cccCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCC
Q 038576          234 ESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEG  313 (411)
Q Consensus       234 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  313 (411)
                      ....+..++.+.+.... ..-.......++.++.+......    + +......+.+|+.+.+.+  .++.+...     
T Consensus       248 ~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~----i-~~~~F~~~~~L~~i~l~~--~i~~I~~~-----  314 (394)
T 4fs7_A          248 VFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVI----V-PEKTFYGCSSLTEVKLLD--SVKFIGEE-----  314 (394)
T ss_dssp             TTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSE----E-CTTTTTTCTTCCEEEECT--TCCEECTT-----
T ss_pred             cccccccceeEEcCCCc-ceeeccccccccccceeccCcee----e-cccccccccccccccccc--ccceechh-----
Confidence            33456677777765421 11111122225566666554321    1 122345567777777753  24444322     


Q ss_pred             CCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCC-CCCCCceEEEEecccc
Q 038576          314 DNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGE-LSTPKLQKVQMSLVDE  389 (411)
Q Consensus       314 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~-~~~~~L~~l~l~~~c~  389 (411)
                            .+..+++|+.+++.+  +++.+  ...+. .+|.+|+.+.+..  .++.+.... ..+++|+++.+..+..
T Consensus       315 ------aF~~c~~L~~i~lp~--~v~~I--~~~aF-~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~~~~  378 (394)
T 4fs7_A          315 ------AFESCTSLVSIDLPY--LVEEI--GKRSF-RGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPKRLE  378 (394)
T ss_dssp             ------TTTTCTTCCEECCCT--TCCEE--CTTTT-TTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEGGGG
T ss_pred             ------hhcCCCCCCEEEeCC--cccEE--hHHhc-cCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECCCCE
Confidence                  334567777777753  46666  12222 4567777777754  366665543 3667788887753433

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.69  E-value=1.1e-08  Score=84.00  Aligned_cols=80  Identities=13%  Similarity=0.196  Sum_probs=34.2

Q ss_pred             cCcEEEecCCcCCC--CccccccccCcEEEeeCC-cccc-chHHhcCC----CCCCEEecCCCCCccccCcccccCCCCc
Q 038576           15 NLQTLSLDDCELGD--MAIIGDLKKLVILALRGS-DMEE-LAGEIGQL----TQLRLLNLSKCFELKVIPPNVISSLSRL   86 (411)
Q Consensus        15 ~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~-~l~~-lp~~i~~l----~~L~~L~L~~c~~~~~~~~~~l~~L~~L   86 (411)
                      .|+.||+++|.+++  ...+..+++|++|+|++| .+++ --..++.+    ++|++|++++|..+++-.-..+.++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            44455555544444  344444444555555444 2431 11223322    2344444444444444332224444444


Q ss_pred             cEEEeccc
Q 038576           87 EELYIGQS   94 (411)
Q Consensus        87 ~~L~l~~~   94 (411)
                      ++|++++|
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            44444444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.63  E-value=6.6e-07  Score=84.59  Aligned_cols=227  Identities=11%  Similarity=0.090  Sum_probs=150.3

Q ss_pred             CCCC-hhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccc
Q 038576            4 LALP-SSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVI   80 (411)
Q Consensus         4 ~~lp-~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l   80 (411)
                      +.++ ..|.++ +|+.+.+.+ .++.  ...|.++.+|+.+++.+++++.++.....+.+|+.+.+..  .++.++..++
T Consensus       147 ~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF  222 (401)
T 4fdw_A          147 KSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAF  222 (401)
T ss_dssp             CEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTT
T ss_pred             cEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC--chheehhhHh
Confidence            3444 236665 699999986 5665  5779999999999999999999987755579999999985  4889988889


Q ss_pred             cCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCC-cccccCCCCcEEEEEecCCcccc
Q 038576           81 SSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLP-RDLSFFKMLQRYRILIGDSREYD  159 (411)
Q Consensus        81 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~i~~~~~~~~~  159 (411)
                      ..+++|+.+++..+- .  .+.          ...+.+ .+|+.+.+.. ....++ ..+..|++|+.+.+..+..... 
T Consensus       223 ~~~~~L~~l~l~~~l-~--~I~----------~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~-  286 (401)
T 4fdw_A          223 LKTSQLKTIEIPENV-S--TIG----------QEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDD-  286 (401)
T ss_dssp             TTCTTCCCEECCTTC-C--EEC----------TTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCC-
T ss_pred             hCCCCCCEEecCCCc-c--Ccc----------cccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCC-
Confidence            999999999998752 2  122          245555 6899999954 344443 4567899999999873321100 


Q ss_pred             CcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCC
Q 038576          160 AWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAK  239 (411)
Q Consensus       160 ~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~  239 (411)
                                                    ....+     ....+.+|++|+.+      .+.+  +++.+....+..++
T Consensus       287 ------------------------------~~~~I-----~~~aF~~c~~L~~l------~l~~--~i~~I~~~aF~~c~  323 (401)
T 4fdw_A          287 ------------------------------PEAMI-----HPYCLEGCPKLARF------EIPE--SIRILGQGLLGGNR  323 (401)
T ss_dssp             ------------------------------TTCEE-----CTTTTTTCTTCCEE------CCCT--TCCEECTTTTTTCC
T ss_pred             ------------------------------cccEE-----CHHHhhCCccCCeE------EeCC--ceEEEhhhhhcCCC
Confidence                                          00000     01123466777777      7763  36666666667788


Q ss_pred             CCcEEEecCCcCCccCC-CCCCCCCCcCeEeecCCCCCccccchHhhhcc-ccccEEeEcc
Q 038576          240 DLEKLSIFMCDNLTHLV-PSSTSFQNLTTLTVWGCHGMINVLTSSTARSL-VRLRQMTIKV  298 (411)
Q Consensus       240 ~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l-~~L~~L~l~~  298 (411)
                      +|+.+.+..  ++.... .....+ +|+.+.+.++.. ..+.... ...+ .+++.|.+..
T Consensus       324 ~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~~-~~l~~~~-F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          324 KVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTTP-PQVFEKV-WYGFPDDITVIRVPA  379 (401)
T ss_dssp             SCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSSC-CBCCCSS-CCCSCTTCCEEEECG
T ss_pred             CccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCCC-ccccccc-ccCCCCCccEEEeCH
Confidence            888888853  233222 223336 889998877643 3332222 2334 3677787765

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.53  E-value=4.9e-08  Score=80.23  Aligned_cols=88  Identities=16%  Similarity=0.155  Sum_probs=47.6

Q ss_pred             CCcEEEecCCcCCc-cCCCCCCCCCCcCeEeecCCCCCccccchHhhhc----cccccEEeEcccccccccccccCCCCC
Q 038576          240 DLEKLSIFMCDNLT-HLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARS----LVRLRQMTIKVCVMITEIVADEDDEGD  314 (411)
Q Consensus       240 ~L~~L~l~~c~~l~-~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~----l~~L~~L~l~~c~~l~~~~~~~~~~~~  314 (411)
                      +|++|++++|.... ++... ..+++|+.|++++|..+++..... +..    .++|++|++++|.++++.....     
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~-L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~-----  134 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLER-LSQLENLQKSMLEMEIISCGNVTDKGIIA-----  134 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHH-HHTCHHHHHHCCEEEEESCTTCCHHHHHH-----
T ss_pred             eEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHH-HHhcccccCCCCEEEcCCCCcCCHHHHHH-----
Confidence            46677777665322 22222 236677777777777666643222 222    2456777777766655542211     


Q ss_pred             CccCccccccCCCCeeecCCCcCCce
Q 038576          315 NYAAQDEIVFSELKELNLSNLQSLTS  340 (411)
Q Consensus       315 ~~~~~~~~~~~~L~~L~l~~c~~l~~  340 (411)
                            ...+++|++|++++|+.+++
T Consensus       135 ------L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          135 ------LHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             ------GGGCTTCCEEEEESCTTCCC
T ss_pred             ------HhcCCCCCEEECCCCCCCCc
Confidence                  12356666666666666655

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.49  E-value=1.8e-08  Score=94.48  Aligned_cols=132  Identities=15%  Similarity=0.195  Sum_probs=56.9

Q ss_pred             ccCcEEEecCCcCCC--Cccccc-----cccCcEEEeeCCcccc--chHHhcCCCCCCEEecCCCCCccccCcccc----
Q 038576           14 QNLQTLSLDDCELGD--MAIIGD-----LKKLVILALRGSDMEE--LAGEIGQLTQLRLLNLSKCFELKVIPPNVI----   80 (411)
Q Consensus        14 ~~L~~L~l~~~~l~~--~~~l~~-----l~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l----   80 (411)
                      .+|+.|++++|.++.  ...+..     ..+|++|++++|.++.  +......+++|++|++++| .+++.....+    
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L  150 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLL  150 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHH
Confidence            355566666655544  222221     1455566665555541  1111223445555555553 3333221111    


Q ss_pred             -cCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCc-----CCcccccCCCCcEEEEEecC
Q 038576           81 -SSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKT-----LPRDLSFFKMLQRYRILIGD  154 (411)
Q Consensus        81 -~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~i~~~~  154 (411)
                       ...++|++|++++|.+....        .......+...++|++|++++|.+..     ++..+...++|+.|+++.+.
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~--------~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~  222 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAG--------VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG  222 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHH--------HHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred             HhcCCccceeeCCCCCCChHH--------HHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence             23455555555555543200        00122333445555555555554321     12233444555555555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.49  E-value=4.8e-06  Score=78.60  Aligned_cols=123  Identities=14%  Similarity=0.101  Sum_probs=74.8

Q ss_pred             cccCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCC
Q 038576          234 ESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEG  313 (411)
Q Consensus       234 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  313 (411)
                      ....++.++.+...... ..  ......+.+|+.+.+...  ++.++. ....++.+|+.+++.+  .++.+...     
T Consensus       271 ~F~~~~~l~~~~~~~~~-i~--~~~F~~~~~L~~i~l~~~--i~~I~~-~aF~~c~~L~~i~lp~--~v~~I~~~-----  337 (394)
T 4fs7_A          271 LFYNCSGLKKVIYGSVI-VP--EKTFYGCSSLTEVKLLDS--VKFIGE-EAFESCTSLVSIDLPY--LVEEIGKR-----  337 (394)
T ss_dssp             TTTTCTTCCEEEECSSE-EC--TTTTTTCTTCCEEEECTT--CCEECT-TTTTTCTTCCEECCCT--TCCEECTT-----
T ss_pred             ccccccccceeccCcee-ec--cccccccccccccccccc--cceech-hhhcCCCCCCEEEeCC--cccEEhHH-----
Confidence            34566777777665321 11  112223778888888643  666643 3456788899888853  25555332     


Q ss_pred             CCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCCCceEE
Q 038576          314 DNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKV  382 (411)
Q Consensus       314 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l  382 (411)
                            .+..+.+|+.+.+..  +++.+  ...+. .+|++|+++.+..  .++.+.......++|+.+
T Consensus       338 ------aF~~c~~L~~i~lp~--~l~~I--~~~aF-~~C~~L~~i~lp~--~~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          338 ------SFRGCTSLSNINFPL--SLRKI--GANAF-QGCINLKKVELPK--RLEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             ------TTTTCTTCCEECCCT--TCCEE--CTTTB-TTCTTCCEEEEEG--GGGGGGGGBCTTCEEEEE
T ss_pred             ------hccCCCCCCEEEECc--cccEe--hHHHh-hCCCCCCEEEECC--CCEEhhheecCCCCCcEE
Confidence                  344678888888864  47777  22222 5688899988854  355555455567777765

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.48  E-value=6e-09  Score=97.63  Aligned_cols=132  Identities=14%  Similarity=0.175  Sum_probs=96.8

Q ss_pred             ccCcEEEecCCcCCC--Cccc-cccccCcEEEeeCCccccc-----hHHh-cCCCCCCEEecCCCCCcccc-----Cccc
Q 038576           14 QNLQTLSLDDCELGD--MAII-GDLKKLVILALRGSDMEEL-----AGEI-GQLTQLRLLNLSKCFELKVI-----PPNV   79 (411)
Q Consensus        14 ~~L~~L~l~~~~l~~--~~~l-~~l~~L~~L~L~~~~l~~l-----p~~i-~~l~~L~~L~L~~c~~~~~~-----~~~~   79 (411)
                      .+|++|++++|.+++  ...+ ..+.+|++|++++|.++..     ...+ ...++|++|++++| .+++.     +.. 
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~-  178 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEG-  178 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHH-
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHH-
Confidence            699999999999877  3333 3568999999999998732     2233 35789999999995 56553     322 


Q ss_pred             ccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCc-----CCcccccCCCCcEEEEEecC
Q 038576           80 ISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKT-----LPRDLSFFKMLQRYRILIGD  154 (411)
Q Consensus        80 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~i~~~~  154 (411)
                      +...++|++|++++|.+....+        ......+...++|++|++++|.+..     ++..+...++|++|+++.+.
T Consensus       179 L~~~~~L~~L~Ls~N~l~~~g~--------~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          179 LAGNTSVTHLSLLHTGLGDEGL--------ELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHTCSSCCEEECTTSSCHHHHH--------HHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             HhcCCCcCEEeCCCCCCCcHHH--------HHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            5789999999999998754011        1234667778899999999998653     33445567899999987655


Q ss_pred             C
Q 038576          155 S  155 (411)
Q Consensus       155 ~  155 (411)
                      .
T Consensus       251 i  251 (372)
T 3un9_A          251 L  251 (372)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.29  E-value=3.1e-07  Score=77.00  Aligned_cols=112  Identities=14%  Similarity=0.126  Sum_probs=66.6

Q ss_pred             hhccccCcEEEecCC-cCCC--C----ccccccccCcEEEeeCCccc-----cchHHhcCCCCCCEEecCCCCCcccc--
Q 038576           10 LGLLQNLQTLSLDDC-ELGD--M----AIIGDLKKLVILALRGSDME-----ELAGEIGQLTQLRLLNLSKCFELKVI--   75 (411)
Q Consensus        10 l~~l~~L~~L~l~~~-~l~~--~----~~l~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~L~~c~~~~~~--   75 (411)
                      +.....|++|++++| .+.+  .    ..+...++|++|+|++|.+.     .+...+...++|++|++++ +.+.+-  
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~-N~i~~~g~  110 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVES-NFISGSGI  110 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCS-SCCCHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcC-CcCCHHHH
Confidence            455677777777777 6655  1    33445677777777777765     2344555667777777777 345442  


Q ss_pred             ---CcccccCCCCccEEEe--cccccccCccccccccccccchhhccCCCCCCEEEEeecc
Q 038576           76 ---PPNVISSLSRLEELYI--GQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQD  131 (411)
Q Consensus        76 ---~~~~l~~L~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  131 (411)
                         ... +...++|++|++  ++|.+...        +.......+...++|++|++++|.
T Consensus       111 ~~l~~~-L~~n~~L~~L~L~~~~N~i~~~--------g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          111 LALVEA-LQSNTSLIELRIDNQSQPLGNN--------VEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHG-GGGCSSCCEEECCCCSSCCCHH--------HHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHH-HHhCCCceEEEecCCCCCCCHH--------HHHHHHHHHHhCCCcCEEeccCCC
Confidence               222 556667777777  66665430        001223444455667777776664

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.27  E-value=8.5e-05  Score=69.96  Aligned_cols=126  Identities=9%  Similarity=0.077  Sum_probs=86.1

Q ss_pred             hhhccc-cCcEEEecCCcCCC--CccccccccCcEEEeeCC---ccccchH-HhcCCCCCCEEecCCCCCccccCccccc
Q 038576            9 SLGLLQ-NLQTLSLDDCELGD--MAIIGDLKKLVILALRGS---DMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVIS   81 (411)
Q Consensus         9 ~l~~l~-~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~---~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~   81 (411)
                      .|.++. .|+.+.+... ++.  ...|.++.+|+.+.+..+   .++.+.. .+..+.+|+.+.+..  .++.++..++.
T Consensus        58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~~I~~~aF~  134 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVTEIDSEAFH  134 (394)
T ss_dssp             TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCSEECTTTTT
T ss_pred             hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC--ccceehhhhhh
Confidence            477774 5999999753 555  577889999999999875   3666654 477888999888765  47778777788


Q ss_pred             CCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEE
Q 038576           82 SLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRIL  151 (411)
Q Consensus        82 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~  151 (411)
                      .+.+|+.+.+......   +          ....+..+.+|+.+.+..+ ...+........+|+.+.+-
T Consensus       135 ~c~~L~~i~lp~~~~~---I----------~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip  190 (394)
T 4gt6_A          135 HCEELDTVTIPEGVTS---V----------ADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIP  190 (394)
T ss_dssp             TCTTCCEEECCTTCCE---E----------CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEEC
T ss_pred             hhcccccccccceeee---e----------cccceecccccccccccce-eeEeccccccccceeEEEEC
Confidence            9999999998654321   1          2256677778888877543 22233322234567777663

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.24  E-value=0.00013  Score=68.58  Aligned_cols=107  Identities=13%  Similarity=0.141  Sum_probs=65.7

Q ss_pred             cccccc-ccCcEEEeeCCccccch-HHhcCCCCCCEEecCCC--CCccccCcccccCCCCccEEEecccccccCcccccc
Q 038576           30 AIIGDL-KKLVILALRGSDMEELA-GEIGQLTQLRLLNLSKC--FELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVD  105 (411)
Q Consensus        30 ~~l~~l-~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c--~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~  105 (411)
                      ..|.++ ..|+.+.+-.+ ++.+. .++.++.+|+.+.+..+  ..++.++..++..+.+|+.+.+..+-.   .     
T Consensus        57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~~---~-----  127 (394)
T 4gt6_A           57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVT---E-----  127 (394)
T ss_dssp             TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTCS---E-----
T ss_pred             hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCccc---e-----
Confidence            445555 35788877654 55554 34778888888887652  346777776678888888776654321   1     


Q ss_pred             ccccccchhhccCCCCCCEEEEeeccCCcCC-cccccCCCCcEEEEE
Q 038576          106 GERRNASLDELNNLSKLTSLEILIQDEKTLP-RDLSFFKMLQRYRIL  151 (411)
Q Consensus       106 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~i~  151 (411)
                           -....+..+.+|+.+.+.... ..+. ..+..+.+|+.+.+.
T Consensus       128 -----I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~  168 (394)
T 4gt6_A          128 -----IDSEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLP  168 (394)
T ss_dssp             -----ECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECC
T ss_pred             -----ehhhhhhhhccccccccccee-eeecccceeccccccccccc
Confidence                 122556777788888875432 2222 234566777777653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.23  E-value=1.1e-06  Score=81.59  Aligned_cols=160  Identities=16%  Similarity=0.173  Sum_probs=90.9

Q ss_pred             CChhhhccccCcEEEecCCcCC----------C-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccc
Q 038576            6 LPSSLGLLQNLQTLSLDDCELG----------D-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKV   74 (411)
Q Consensus         6 lp~~l~~l~~L~~L~l~~~~l~----------~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~   74 (411)
                      +++++.++.+|+.|.+.+....          + ...+..+++|+.|+++++.-..++. + .+++|++|++..|. +..
T Consensus       131 L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~-l~~  207 (362)
T 2ra8_A          131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGG-LPD  207 (362)
T ss_dssp             HHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSB-CCH
T ss_pred             HHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCC-CCh
Confidence            4456778889999988765322          1 1334567899999998873223443 3 37889999998753 332


Q ss_pred             cCcccc--cCCCCccEEEecccc--cccCccccccccccccchhhc--cCCCCCCEEEEeeccCCc-CCccc---ccCCC
Q 038576           75 IPPNVI--SSLSRLEELYIGQSP--IQWGKVEGVDGERRNASLDEL--NNLSKLTSLEILIQDEKT-LPRDL---SFFKM  144 (411)
Q Consensus        75 ~~~~~l--~~L~~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~-~~~~l---~~~~~  144 (411)
                      -....+  ..+++|++|+++.+.  ... ..      ........+  ..+++|++|++.+|.... .+..+   ..+++
T Consensus       208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~-~~------~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~  280 (362)
T 2ra8_A          208 SVVEDILGSDLPNLEKLVLYVGVEDYGF-DG------DMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ  280 (362)
T ss_dssp             HHHHHHHHSBCTTCCEEEEECBCGGGTC-CS------CGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGG
T ss_pred             HHHHHHHHccCCCCcEEEEecccccccc-ch------hHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCC
Confidence            221113  378899999886421  110 00      000111112  357889999998876432 11112   24788


Q ss_pred             CcEEEEEecCCcc-----ccCc-CCccceeEEEecCC
Q 038576          145 LQRYRILIGDSRE-----YDAW-DGISRISKLKLTNG  175 (411)
Q Consensus       145 L~~L~i~~~~~~~-----~~~~-~~~~~l~~L~~~~~  175 (411)
                      |++|+++.+....     +... ....+++.|++..+
T Consensus       281 L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          281 LETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             CSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             CCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence            9999987554332     1111 12467778877554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.06  E-value=1.8e-06  Score=80.28  Aligned_cols=139  Identities=17%  Similarity=0.090  Sum_probs=81.9

Q ss_pred             cCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHh-hhccccccEEeEcccccccccccccCCCCC
Q 038576          236 SNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSST-ARSLVRLRQMTIKVCVMITEIVADEDDEGD  314 (411)
Q Consensus       236 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  314 (411)
                      ..+|+|++|.++++..+. +.+ .. .++|+.|++..|.. ..-..... ...+|+|+.|+|..+.+...  .   ..+.
T Consensus       169 ~~~P~L~~L~L~g~~~l~-l~~-~~-~~~L~~L~L~~~~l-~~~~l~~l~~~~lp~L~~L~L~~~~~~~~--~---~~~~  239 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNLS-IGK-KP-RPNLKSLEIISGGL-PDSVVEDILGSDLPNLEKLVLYVGVEDYG--F---DGDM  239 (362)
T ss_dssp             HTCTTCCEEEEECCBTCB-CCS-CB-CTTCSEEEEECSBC-CHHHHHHHHHSBCTTCCEEEEECBCGGGT--C---CSCG
T ss_pred             hcCCCCcEEEEeCCCCce-ecc-cc-CCCCcEEEEecCCC-ChHHHHHHHHccCCCCcEEEEeccccccc--c---chhH
Confidence            578999999998864332 223 23 89999999987753 32211111 23789999999964321100  0   0000


Q ss_pred             CccCc--cccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCcc-----ccCCCCCCCCceEEEEe
Q 038576          315 NYAAQ--DEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKI-----FSEGELSTPKLQKVQMS  385 (411)
Q Consensus       315 ~~~~~--~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~-----~p~~~~~~~~L~~l~l~  385 (411)
                      ..+..  ....||+|+.|.+.+|..-...+. ....+..+|+|++|+++. +.+..     ++.++..+++|+.|++.
T Consensus       240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~-~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~  315 (362)
T 2ra8_A          240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE-MFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMK  315 (362)
T ss_dssp             GGTGGGSCTTTCTTCCEEEEESCTTHHHHHH-HHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred             HHHHHHHhcCCCCCcCEEeCCCCCCchHHHH-HHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECC
Confidence            00000  113589999999998753221100 000002359999999976 45664     44444467999999996

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.92  E-value=3.1e-06  Score=70.80  Aligned_cols=116  Identities=14%  Similarity=0.089  Sum_probs=82.6

Q ss_pred             ccccccccCcEEEeeCC-ccc-----cchHHhcCCCCCCEEecCCCCCccccCc----ccccCCCCccEEEecccccccC
Q 038576           30 AIIGDLKKLVILALRGS-DME-----ELAGEIGQLTQLRLLNLSKCFELKVIPP----NVISSLSRLEELYIGQSPIQWG   99 (411)
Q Consensus        30 ~~l~~l~~L~~L~L~~~-~l~-----~lp~~i~~l~~L~~L~L~~c~~~~~~~~----~~l~~L~~L~~L~l~~~~~~~~   99 (411)
                      ..+...+.|++|++++| .+.     .+...+...++|++|+|++| .+.+-..    ..+...++|++|++++|.+...
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            34567789999999999 886     35566788899999999995 5654221    1255678999999999987541


Q ss_pred             ccccccccccccchhhccCCCCCCEEEE--eeccCCc-----CCcccccCCCCcEEEEEecC
Q 038576          100 KVEGVDGERRNASLDELNNLSKLTSLEI--LIQDEKT-----LPRDLSFFKMLQRYRILIGD  154 (411)
Q Consensus       100 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l--~~~~~~~-----~~~~l~~~~~L~~L~i~~~~  154 (411)
                      .        .......+...+.|++|++  ++|.+..     +...+...++|++|++..+.
T Consensus       109 g--------~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          109 G--------ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             H--------HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             H--------HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            1        1134566777889999999  7776443     33445567889999886443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.86  E-value=1.1e-05  Score=71.31  Aligned_cols=86  Identities=22%  Similarity=0.310  Sum_probs=58.4

Q ss_pred             cccccCcEEEeeCCccccc---hHHhcCCCCCCEEecCCCCCccccCcccccCCC--CccEEEecccccccCcccccccc
Q 038576           33 GDLKKLVILALRGSDMEEL---AGEIGQLTQLRLLNLSKCFELKVIPPNVISSLS--RLEELYIGQSPIQWGKVEGVDGE  107 (411)
Q Consensus        33 ~~l~~L~~L~L~~~~l~~l---p~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~--~L~~L~l~~~~~~~~~~~~~~~~  107 (411)
                      .++++|++|+|++|.++.+   |..++.+++|++|+|++ +.+..+..  +..+.  +|++|++++|++.. .++..   
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~--l~~l~~l~L~~L~L~~Npl~~-~~~~~---  239 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERE--LDKIKGLKLEELWLDGNSLCD-TFRDQ---  239 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGG--GGGGTTSCCSEEECTTSTTGG-GCSSH---
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCchh--hhhcccCCcceEEccCCcCcc-ccCcc---
Confidence            4678899999999988754   45667889999999998 67776632  44444  89999999988754 22200   


Q ss_pred             ccccchhhccCCCCCCEEE
Q 038576          108 RRNASLDELNNLSKLTSLE  126 (411)
Q Consensus       108 ~~~~~~~~l~~l~~L~~L~  126 (411)
                       ..-....+..+++|+.|+
T Consensus       240 -~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          240 -STYISAIRERFPKLLRLD  257 (267)
T ss_dssp             -HHHHHHHHHHCTTCCEES
T ss_pred             -hhHHHHHHHHCcccCeEC
Confidence             001124567777887776

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.77  E-value=0.0035  Score=58.39  Aligned_cols=79  Identities=6%  Similarity=0.127  Sum_probs=54.5

Q ss_pred             hhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCc
Q 038576           10 LGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRL   86 (411)
Q Consensus        10 l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L   86 (411)
                      +....+|+.+.+.. .++.  ...|.++.+|+.+++..+ ++.+.. .+.++ +|+.+.+-.  .++.++..++.. .+|
T Consensus        42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~-~~L  115 (379)
T 4h09_A           42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQG-TDL  115 (379)
T ss_dssp             GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTT-CCC
T ss_pred             cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc--eeeEeccceecc-CCc
Confidence            45567888888864 3444  466888999999999654 666654 35566 577777654  477777765655 479


Q ss_pred             cEEEeccc
Q 038576           87 EELYIGQS   94 (411)
Q Consensus        87 ~~L~l~~~   94 (411)
                      +.+.+..+
T Consensus       116 ~~i~lp~~  123 (379)
T 4h09_A          116 DDFEFPGA  123 (379)
T ss_dssp             SEEECCTT
T ss_pred             ccccCCCc
Confidence            99888654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.74  E-value=1.8e-05  Score=69.84  Aligned_cols=107  Identities=19%  Similarity=0.137  Sum_probs=74.2

Q ss_pred             ccccccccCcE--EEeeCCccccchH----HhcCCCCCCEEecCCCCCccccCc--ccccCCCCccEEEecccccccCcc
Q 038576           30 AIIGDLKKLVI--LALRGSDMEELAG----EIGQLTQLRLLNLSKCFELKVIPP--NVISSLSRLEELYIGQSPIQWGKV  101 (411)
Q Consensus        30 ~~l~~l~~L~~--L~L~~~~l~~lp~----~i~~l~~L~~L~L~~c~~~~~~~~--~~l~~L~~L~~L~l~~~~~~~~~~  101 (411)
                      +.+...+.|+.  ++++.|....++.    ...++++|+.|+|++ +.+..++.  ..++.+++|+.|++++|.+..  +
T Consensus       135 s~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~--~  211 (267)
T 3rw6_A          135 KGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGNELKS--E  211 (267)
T ss_dssp             TTGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTSCCCS--G
T ss_pred             HHcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCCccCC--c
Confidence            34556666766  6677775554433    225799999999999 67776542  235689999999999998864  1


Q ss_pred             ccccccccccchhhccCCCCCCEEEEeeccCCc-CC-------cccccCCCCcEEE
Q 038576          102 EGVDGERRNASLDELNNLSKLTSLEILIQDEKT-LP-------RDLSFFKMLQRYR  149 (411)
Q Consensus       102 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~-------~~l~~~~~L~~L~  149 (411)
                               .....+..+ +|++|++.+|.... +|       ..+..+++|+.|+
T Consensus       212 ---------~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          212 ---------RELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             ---------GGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             ---------hhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence                     122334444 89999999998543 33       2356789999885

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.51  E-value=0.0089  Score=55.58  Aligned_cols=309  Identities=10%  Similarity=0.110  Sum_probs=158.6

Q ss_pred             EEEecCCc-CCC------CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCccEE
Q 038576           18 TLSLDDCE-LGD------MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEEL   89 (411)
Q Consensus        18 ~L~l~~~~-l~~------~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L   89 (411)
                      +|.++|.+ +.+      .+++....+|+.+.+.. .++.++. ++.+|.+|+.+.+..  .++.++..++..+ +|+.+
T Consensus        21 ~l~i~g~g~~~~~~~~~~~~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i   96 (379)
T 4h09_A           21 VLTISGTGAMPDYTKIANIPWYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSY   96 (379)
T ss_dssp             EEEEEESEECCCCSSGGGSTTGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEE
T ss_pred             eEEEEeeeecccccccccccccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCC-CCceE
Confidence            45666653 322      45677778999999975 4666654 488999999999975  4888888878887 68888


Q ss_pred             EecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccC--cCCccce
Q 038576           90 YIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDA--WDGISRI  167 (411)
Q Consensus        90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~--~~~~~~l  167 (411)
                      .+..+-.   .+.          ...+.. .+|+.+.+.... ..+........++....+. ........  +.....+
T Consensus        97 ~~~~~l~---~I~----------~~aF~~-~~L~~i~lp~~~-~~i~~~~F~~~~l~~~~~~-~~v~~i~~~~f~~~~~l  160 (379)
T 4h09_A           97 TGMERVK---KFG----------DYVFQG-TDLDDFEFPGAT-TEIGNYIFYNSSVKRIVIP-KSVTTIKDGIGYKAENL  160 (379)
T ss_dssp             EECTTCC---EEC----------TTTTTT-CCCSEEECCTTC-CEECTTTTTTCCCCEEEEC-TTCCEECSCTTTTCTTC
T ss_pred             ECCceee---Eec----------cceecc-CCcccccCCCcc-ccccccccccceeeeeecc-ceeeccccchhcccccc
Confidence            7754421   111          123333 368888775432 1222221222345555442 11111111  1112233


Q ss_pred             eEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEec
Q 038576          168 SKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIF  247 (411)
Q Consensus       168 ~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~  247 (411)
                      ................... .......      ......+..+..+      .+..  ....+.......+.+|+.+.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~------~~~~--~~~~i~~~~f~~~~~l~~i~~~  225 (379)
T 4h09_A          161 EKIEVSSNNKNYVAENYVL-YNKNKTI------LESYPAAKTGTEF------TIPS--TVKTVTAYGFSYGKNLKKITIT  225 (379)
T ss_dssp             CEEEECTTCSSEEEETTEE-EETTSSE------EEECCTTCCCSEE------ECCT--TCCEECTTTTTTCSSCSEEECC
T ss_pred             cccccccccceeeccccee-cccccce------ecccccccccccc------cccc--ceeEEeecccccccccceeeec
Confidence            3332211111000000000 0000000      0001111222222      2211  1222222233456777777775


Q ss_pred             CCcCCccCC-CCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCC
Q 038576          248 MCDNLTHLV-PSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSE  326 (411)
Q Consensus       248 ~c~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~  326 (411)
                      .  .+.... .....+.+|+.+.+...  ++.+.. .....+.+|+.+.+..  .++.+...           .+..+++
T Consensus       226 ~--~~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~-~aF~~~~~l~~i~l~~--~i~~i~~~-----------aF~~c~~  287 (379)
T 4h09_A          226 S--GVTTLGDGAFYGMKALDEIAIPKN--VTSIGS-FLLQNCTALKTLNFYA--KVKTVPYL-----------LCSGCSN  287 (379)
T ss_dssp             T--TCCEECTTTTTTCSSCCEEEECTT--CCEECT-TTTTTCTTCCEEEECC--CCSEECTT-----------TTTTCTT
T ss_pred             c--ceeEEccccccCCccceEEEcCCC--ccEeCc-cccceeehhccccccc--cceecccc-----------ccccccc
Confidence            3  221111 12223778888888543  555533 3456778888888854  24444322           3446788


Q ss_pred             CCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCC-CCCCCceEEEEe
Q 038576          327 LKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGE-LSTPKLQKVQMS  385 (411)
Q Consensus       327 L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~-~~~~~L~~l~l~  385 (411)
                      |+.+.+.+. .++.+  ...+. .+|.+|+.+.+..  .++.+.... ..+.+|+++.+.
T Consensus       288 L~~i~l~~~-~i~~I--~~~aF-~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          288 LTKVVMDNS-AIETL--EPRVF-MDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             CCEEEECCT-TCCEE--CTTTT-TTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred             ccccccccc-cccee--hhhhh-cCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence            999988753 46777  22222 5688999998854  577776543 366788888774

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.20  E-value=0.0048  Score=47.84  Aligned_cols=54  Identities=19%  Similarity=0.348  Sum_probs=36.1

Q ss_pred             EEEeeCCccc--cchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEeccccc
Q 038576           40 ILALRGSDME--ELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPI   96 (411)
Q Consensus        40 ~L~L~~~~l~--~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~   96 (411)
                      +++.++..++  .+|..+.  ++|++|+|++ +.++.++.+++..+++|++|++++|++
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence            5566666665  6664332  3577777777 677777776677777777777777764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.96  E-value=0.02  Score=47.70  Aligned_cols=13  Identities=15%  Similarity=0.199  Sum_probs=6.5

Q ss_pred             CCccEEEeccccc
Q 038576           84 SRLEELYIGQSPI   96 (411)
Q Consensus        84 ~~L~~L~l~~~~~   96 (411)
                      +.|++|++++|.+
T Consensus        98 ~tL~~L~L~~N~I  110 (197)
T 1pgv_A           98 PSLRVLNVESNFL  110 (197)
T ss_dssp             SSCCEEECCSSBC
T ss_pred             CccCeEecCCCcC
Confidence            4455555555544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.90  E-value=0.027  Score=43.58  Aligned_cols=51  Identities=18%  Similarity=0.196  Sum_probs=37.4

Q ss_pred             cEEEecCCcCC--C-CccccccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCC
Q 038576           17 QTLSLDDCELG--D-MAIIGDLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKC   69 (411)
Q Consensus        17 ~~L~l~~~~l~--~-~~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c   69 (411)
                      .+++-++.+++  . |..+.  .+|++|+|++|.|+.+|.. +..+++|++|+|++|
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            36777777776  5 54432  4688888888888888764 567888888888884

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.31  E-value=0.017  Score=48.03  Aligned_cols=82  Identities=13%  Similarity=0.128  Sum_probs=55.8

Q ss_pred             ccccCcEEEecCC-cCCC------CccccccccCcEEEeeCCccc-----cchHHhcCCCCCCEEecCCCCCccccCcc-
Q 038576           12 LLQNLQTLSLDDC-ELGD------MAIIGDLKKLVILALRGSDME-----ELAGEIGQLTQLRLLNLSKCFELKVIPPN-   78 (411)
Q Consensus        12 ~l~~L~~L~l~~~-~l~~------~~~l~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~L~~c~~~~~~~~~-   78 (411)
                      +-..|+.|+|+++ .+.+      -..+..-..|+.|+|++|.+.     .+...+..-+.|++|+|+. +.+.+-... 
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~-N~Ig~~Ga~a  117 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES-NFLTPELLAR  117 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS-SBCCHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC-CcCCHHHHHH
Confidence            3467888999885 6665      244556678999999988876     3555666678899999988 566543221 


Q ss_pred             ---cccCCCCccEEEeccc
Q 038576           79 ---VISSLSRLEELYIGQS   94 (411)
Q Consensus        79 ---~l~~L~~L~~L~l~~~   94 (411)
                         ++..=+.|++|+++++
T Consensus       118 la~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHhhCCceeEEECCCC
Confidence               1344456888888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	411
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.2 bits (103), Expect = 2e-05
 Identities = 17/79 (21%), Positives = 41/79 (51%), Gaps = 4/79 (5%)

Query: 13  LQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFEL 72
           L+NL  L+L    + D++ +  L KL  L    + + +++  +  LT +  L+     ++
Sbjct: 306 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHN-QI 363

Query: 73  KVIPPNVISSLSRLEELYI 91
             + P  +++L+R+ +L +
Sbjct: 364 SDLTP--LANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 7   PSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNL 66
            S +  L  LQ L   + ++ D++ + +L  +  L+   + + +L   +  LT++  L L
Sbjct: 322 ISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLT-PLANLTRITQLGL 380

Query: 67  S 67
           +
Sbjct: 381 N 381

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 3e-04
 Identities = 32/259 (12%), Positives = 66/259 (25%), Gaps = 28/259 (10%)

Query: 17  QTLSLDDCELGDMAIIGDLKK-LVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVI 75
           QTL L    L        L + ++      S M++   E     +++ ++LS        
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 62

Query: 76  PPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTL 135
              ++S  S+L+ L +    +             +  ++ L   S L  L +      + 
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLS------------DPIVNTLAKNSNLVRLNLSGCSGFSE 110

Query: 136 PRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLT 195
               +      R   L            +             + L+       K      
Sbjct: 111 FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL 170

Query: 196 SGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHL 255
                  ++    +         +                     L+ LS+  C ++   
Sbjct: 171 VRRCPNLVHLDLSDSVMLKNDCFQEFFQL--------------NYLQHLSLSRCYDIIPE 216

Query: 256 VPSS-TSFQNLTTLTVWGC 273
                     L TL V+G 
Sbjct: 217 TLLELGEIPTLKTLQVFGI 235

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.002
 Identities = 18/114 (15%), Positives = 37/114 (32%), Gaps = 1/114 (0%)

Query: 6   LPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLN 65
           L   +    +    +LD   L     +      V+L  R S    L      + +L  LN
Sbjct: 12  LKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLN 71

Query: 66  LSKCFELKVIP-PNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNN 118
           LS     ++    +++     L+ L +  + ++  +        +   L    N
Sbjct: 72  LSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN 125

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.003
 Identities = 12/96 (12%), Positives = 38/96 (39%), Gaps = 12/96 (12%)

Query: 15 NLQTLSLDDCELGD---MAIIGDLKKLVILALRG-----SDMEELAGEIGQLTQLRLLNL 66
          ++Q+L +   EL D     ++  L++  ++ L       +  ++++  +     L  LNL
Sbjct: 3  DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 67 SKC----FELKVIPPNVISSLSRLEELYIGQSPIQW 98
                   +  +   + +   ++++L +    +  
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	411
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.86
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.8
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.78
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.75
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.75
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.71
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.69
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.69
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.68
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.67
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.63
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.63
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.6
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.6
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.58
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.56
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.55
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.52
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.52
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.52
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.42
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.36
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.36
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.24
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.21
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.07
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.99
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.98
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.91
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.7
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.5
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.95
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.93
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.86
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.29
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.83
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.8
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.1

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.86  E-value=4.2e-20  Score=172.75  Aligned_cols=301  Identities=15%  Similarity=0.216  Sum_probs=192.3

Q ss_pred             hhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEE
Q 038576           10 LGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEEL   89 (411)
Q Consensus        10 l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L   89 (411)
                      ...+.+|++|+++++++++.+.++.+++|++|++++|+++++|+ ++++++|++|++++ +.+.+++.  ++++++|+.+
T Consensus        40 ~~~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~-n~i~~i~~--l~~l~~L~~L  115 (384)
T d2omza2          40 QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNN-NQIADITP--LANLTNLTGL  115 (384)
T ss_dssp             HHHHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GTTCTTCCEE
T ss_pred             HHHhCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccc-cccccccc--cccccccccc
Confidence            35677899999999999987789999999999999999999875 99999999999999 57887775  8999999999


Q ss_pred             EecccccccCccccccccccccchhhccCCCCCCEEEEeeccCC------------------------------------
Q 038576           90 YIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEK------------------------------------  133 (411)
Q Consensus        90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~------------------------------------  133 (411)
                      +++++.+..  +            ........+.......+...                                    
T Consensus       116 ~~~~~~~~~--~------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (384)
T d2omza2         116 TLFNNQITD--I------------DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD  181 (384)
T ss_dssp             ECCSSCCCC--C------------GGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEE
T ss_pred             ccccccccc--c------------ccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccc
Confidence            999887653  1            11112222233222222111                                    


Q ss_pred             ------cCCcccccCCCCcEEEEEecCCccccCcCCccceeEEEecCCcccccccccccccccchhcccCCCcccccccc
Q 038576          134 ------TLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSF  207 (411)
Q Consensus       134 ------~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  207 (411)
                            ........+++++.+.+..+....++.+....+++.|.+..+.                     +.....+..+
T Consensus       182 ~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~---------------------l~~~~~l~~l  240 (384)
T d2omza2         182 ISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ---------------------LKDIGTLASL  240 (384)
T ss_dssp             CCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSC---------------------CCCCGGGGGC
T ss_pred             ccccccccccccccccccceeeccCCccCCCCcccccCCCCEEECCCCC---------------------CCCcchhhcc
Confidence                  1111223344444444443333333222223334444332211                     1111123356


Q ss_pred             chhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhc
Q 038576          208 KNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARS  287 (411)
Q Consensus       208 ~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~  287 (411)
                      ++|+.|      .+.++. +..+..  ...+++|++|+++++ .+....+... ++.++.+.+..+. ++.+   .....
T Consensus       241 ~~L~~L------~l~~n~-l~~~~~--~~~~~~L~~L~l~~~-~l~~~~~~~~-~~~l~~l~~~~n~-l~~~---~~~~~  305 (384)
T d2omza2         241 TNLTDL------DLANNQ-ISNLAP--LSGLTKLTELKLGAN-QISNISPLAG-LTALTNLELNENQ-LEDI---SPISN  305 (384)
T ss_dssp             TTCSEE------ECCSSC-CCCCGG--GTTCTTCSEEECCSS-CCCCCGGGTT-CTTCSEEECCSSC-CSCC---GGGGG
T ss_pred             cccchh------ccccCc-cCCCCc--ccccccCCEeeccCc-ccCCCCcccc-ccccccccccccc-cccc---cccch
Confidence            677777      777664 444333  346778888888764 3344434333 7778888876654 3333   23577


Q ss_pred             cccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCc
Q 038576          288 LVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMK  367 (411)
Q Consensus       288 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~  367 (411)
                      +++++.|+++++. ++++..             +..+|+|++|++++| .+++++.    . ..+++|++|++++| +++
T Consensus       306 ~~~l~~L~ls~n~-l~~l~~-------------l~~l~~L~~L~L~~n-~l~~l~~----l-~~l~~L~~L~l~~N-~l~  364 (384)
T d2omza2         306 LKNLTYLTLYFNN-ISDISP-------------VSSLTKLQRLFFANN-KVSDVSS----L-ANLTNINWLSAGHN-QIS  364 (384)
T ss_dssp             CTTCSEEECCSSC-CSCCGG-------------GGGCTTCCEEECCSS-CCCCCGG----G-GGCTTCCEEECCSS-CCC
T ss_pred             hcccCeEECCCCC-CCCCcc-------------cccCCCCCEEECCCC-CCCCChh----H-cCCCCCCEEECCCC-cCC
Confidence            8888888888864 555432             235889999999987 6777631    1 34689999999875 678


Q ss_pred             cccCCCCCCCCceEEEEec
Q 038576          368 IFSEGELSTPKLQKVQMSL  386 (411)
Q Consensus       368 ~~p~~~~~~~~L~~l~l~~  386 (411)
                      .++. +..+++|+.|+++.
T Consensus       365 ~l~~-l~~l~~L~~L~L~~  382 (384)
T d2omza2         365 DLTP-LANLTRITQLGLND  382 (384)
T ss_dssp             BCGG-GTTCTTCSEEECCC
T ss_pred             CChh-hccCCCCCEeeCCC
Confidence            7765 66788999999864

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=6.5e-18  Score=157.67  Aligned_cols=298  Identities=16%  Similarity=0.264  Sum_probs=208.2

Q ss_pred             CCCCChhhhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccC
Q 038576            3 LLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISS   82 (411)
Q Consensus         3 l~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~   82 (411)
                      ++++ +++..+++|++|++++|.+++.+.++++++|++|++++|.+..+++ ++++++|+.|++++ +.+..++.  ...
T Consensus        56 I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~~~-~~~~~~~~--~~~  130 (384)
T d2omza2          56 IKSI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN-NQITDIDP--LKN  130 (384)
T ss_dssp             CCCC-TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GTT
T ss_pred             CCCc-cccccCCCCCEEeCcCCcCCCCccccCCcccccccccccccccccc-cccccccccccccc-cccccccc--ccc
Confidence            4555 4688999999999999999995569999999999999999998864 89999999999998 56666554  445


Q ss_pred             CCCccEEEecccccccCcccccc-----------------------------ccccccchhhccCCCCCCEEEEeeccCC
Q 038576           83 LSRLEELYIGQSPIQWGKVEGVD-----------------------------GERRNASLDELNNLSKLTSLEILIQDEK  133 (411)
Q Consensus        83 L~~L~~L~l~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~l~~L~~L~l~~~~~~  133 (411)
                      ...+.......+.+.........                             .............+++++.++++.+...
T Consensus       131 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~  210 (384)
T d2omza2         131 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS  210 (384)
T ss_dssp             CTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccC
Confidence            55666665554432210000000                             0011122345667788999999998877


Q ss_pred             cCCcccccCCCCcEEEEEecCCccccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhc
Q 038576          134 TLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENG  213 (411)
Q Consensus       134 ~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L  213 (411)
                      .+++ ...+++|++|.+..+....++.+....+++.+++..+...        +.             ..+..+++|++|
T Consensus       211 ~~~~-~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~--------~~-------------~~~~~~~~L~~L  268 (384)
T d2omza2         211 DITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS--------NL-------------APLSGLTKLTEL  268 (384)
T ss_dssp             CCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC--------CC-------------GGGTTCTTCSEE
T ss_pred             CCCc-ccccCCCCEEECCCCCCCCcchhhcccccchhccccCccC--------CC-------------CcccccccCCEe
Confidence            7654 4578899999998777776666666777888776553211        11             112356788888


Q ss_pred             hHhhhccccccccccccccccccCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccE
Q 038576          214 MEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQ  293 (411)
Q Consensus       214 ~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~  293 (411)
                            .+.++. +..+..  ...++.++.+.+..+ .+.+...... +++++.|+++++ .++++.+   +..+++|++
T Consensus       269 ------~l~~~~-l~~~~~--~~~~~~l~~l~~~~n-~l~~~~~~~~-~~~l~~L~ls~n-~l~~l~~---l~~l~~L~~  333 (384)
T d2omza2         269 ------KLGANQ-ISNISP--LAGLTALTNLELNEN-QLEDISPISN-LKNLTYLTLYFN-NISDISP---VSSLTKLQR  333 (384)
T ss_dssp             ------ECCSSC-CCCCGG--GTTCTTCSEEECCSS-CCSCCGGGGG-CTTCSEEECCSS-CCSCCGG---GGGCTTCCE
T ss_pred             ------eccCcc-cCCCCc--ccccccccccccccc-ccccccccch-hcccCeEECCCC-CCCCCcc---cccCCCCCE
Confidence                  887755 333332  346788889988874 3444333333 899999999887 4566532   578999999


Q ss_pred             EeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecC
Q 038576          294 MTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNR  362 (411)
Q Consensus       294 L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~  362 (411)
                      |++++|. ++.+..             +..+++|++|+++++ .+++++ .-    ..+++|++|+|++
T Consensus       334 L~L~~n~-l~~l~~-------------l~~l~~L~~L~l~~N-~l~~l~-~l----~~l~~L~~L~L~~  382 (384)
T d2omza2         334 LFFANNK-VSDVSS-------------LANLTNINWLSAGHN-QISDLT-PL----ANLTRITQLGLND  382 (384)
T ss_dssp             EECCSSC-CCCCGG-------------GGGCTTCCEEECCSS-CCCBCG-GG----TTCTTCSEEECCC
T ss_pred             EECCCCC-CCCChh-------------HcCCCCCCEEECCCC-cCCCCh-hh----ccCCCCCEeeCCC
Confidence            9999985 766532             234899999999886 688873 22    3469999999976

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=1.2e-17  Score=151.10  Aligned_cols=269  Identities=13%  Similarity=0.164  Sum_probs=141.6

Q ss_pred             cCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEec
Q 038576           15 NLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIG   92 (411)
Q Consensus        15 ~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~   92 (411)
                      ..+.++=++.+++. |..+.  +++++|++++|+++.+|+ ++.++++|++|++++ +.+..++...+.++++|++|+++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~-n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN-NKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhcccccccccccc-ccccccchhhhhCCCccCEeccc
Confidence            34445444445555 54442  456666666666666654 355666666666666 34444543335666666666666


Q ss_pred             ccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc-cccCCCCcEEEEEecCCccccCcCCccceeEEE
Q 038576           93 QSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRILIGDSREYDAWDGISRISKLK  171 (411)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~  171 (411)
                      +|.+..  ++           .  .....++.+++..+....++.. +........+.+..+.......+          
T Consensus        88 ~n~l~~--l~-----------~--~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~----------  142 (305)
T d1xkua_          88 KNQLKE--LP-----------E--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE----------  142 (305)
T ss_dssp             SSCCSB--CC-----------S--SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC----------
T ss_pred             CCccCc--Cc-----------c--chhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCC----------
Confidence            665532  11           1  1223455555555554444432 22334444444321111100000          


Q ss_pred             ecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcC
Q 038576          172 LTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDN  251 (411)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~  251 (411)
                                                   ...+..+++|+.+      .+.++. +..++.   ..+++|++|+++++..
T Consensus       143 -----------------------------~~~~~~l~~L~~l------~l~~n~-l~~l~~---~~~~~L~~L~l~~n~~  183 (305)
T d1xkua_         143 -----------------------------NGAFQGMKKLSYI------RIADTN-ITTIPQ---GLPPSLTELHLDGNKI  183 (305)
T ss_dssp             -----------------------------TTGGGGCTTCCEE------ECCSSC-CCSCCS---SCCTTCSEEECTTSCC
T ss_pred             -----------------------------ccccccccccCcc------ccccCC-ccccCc---ccCCccCEEECCCCcC
Confidence                                         0011234455555      555543 333322   2467778888777554


Q ss_pred             CccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeee
Q 038576          252 LTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELN  331 (411)
Q Consensus       252 l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  331 (411)
                      ..........++.++.|++++| .++.+++ .....+++|++|++++|. ++.++..            +..+++|+.|+
T Consensus       184 ~~~~~~~~~~~~~l~~L~~s~n-~l~~~~~-~~~~~l~~L~~L~L~~N~-L~~lp~~------------l~~l~~L~~L~  248 (305)
T d1xkua_         184 TKVDAASLKGLNNLAKLGLSFN-SISAVDN-GSLANTPHLRELHLNNNK-LVKVPGG------------LADHKYIQVVY  248 (305)
T ss_dssp             CEECTGGGTTCTTCCEEECCSS-CCCEECT-TTGGGSTTCCEEECCSSC-CSSCCTT------------TTTCSSCCEEE
T ss_pred             CCCChhHhhccccccccccccc-ccccccc-ccccccccceeeeccccc-ccccccc------------cccccCCCEEE
Confidence            4443333344677888888776 4455433 345677888888888874 6666432            23478888888


Q ss_pred             cCCCcCCceecc---CCCcccccCCCcceEeecCCCCCc
Q 038576          332 LSNLQSLTSFSC---SGNNCAFKFPSLERLVVNRCPNMK  367 (411)
Q Consensus       332 l~~c~~l~~~~~---~~~~~~~~~~~L~~L~i~~C~~l~  367 (411)
                      ++++ +++.++.   .+.+.....++|+.|++.+.+ ++
T Consensus       249 Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~-~~  285 (305)
T d1xkua_         249 LHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQ  285 (305)
T ss_dssp             CCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SC
T ss_pred             CCCC-ccCccChhhccCcchhcccCCCCEEECCCCc-Cc
Confidence            8875 5776621   111222345778888888754 44

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.75  E-value=2.4e-18  Score=156.34  Aligned_cols=245  Identities=14%  Similarity=0.132  Sum_probs=135.2

Q ss_pred             cCcEEEecCCcCCC----CccccccccCcEEEeeC-Cccc-cchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccE
Q 038576           15 NLQTLSLDDCELGD----MAIIGDLKKLVILALRG-SDME-ELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEE   88 (411)
Q Consensus        15 ~L~~L~l~~~~l~~----~~~l~~l~~L~~L~L~~-~~l~-~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~   88 (411)
                      +++.|+|+++.+..    |+.++++++|++|++++ +.++ .+|..|+++++|++|++++ +.+..++...+..+.+|++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~-N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH-TNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEE-ECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcc-ccccccccccccchhhhcc
Confidence            46667777776543    56677777777777766 4565 6677777777777777777 4555554444666777777


Q ss_pred             EEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCC-cCCcccccCCCC-cEEEEEecCCccccCcCCccc
Q 038576           89 LYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEK-TLPRDLSFFKML-QRYRILIGDSREYDAWDGISR  166 (411)
Q Consensus        89 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~l~~~~~L-~~L~i~~~~~~~~~~~~~~~~  166 (411)
                      +++++|.+..            ..+..+.++++++.+++++|... .+|..+..+.++ +.+.+..+..           
T Consensus       130 l~l~~N~~~~------------~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l-----------  186 (313)
T d1ogqa_         130 LDFSYNALSG------------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL-----------  186 (313)
T ss_dssp             EECCSSEEES------------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE-----------
T ss_pred             cccccccccc------------cCchhhccCcccceeeccccccccccccccccccccccccccccccc-----------
Confidence            7777766544            33466667777777777766633 455555555554 3333221100           


Q ss_pred             eeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEe
Q 038576          167 ISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSI  246 (411)
Q Consensus       167 l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l  246 (411)
                       ....          .                   ..+... ....+      .+..+.... ........+++++.+++
T Consensus       187 -~~~~----------~-------------------~~~~~l-~~~~l------~l~~~~~~~-~~~~~~~~~~~l~~l~~  228 (313)
T d1ogqa_         187 -TGKI----------P-------------------PTFANL-NLAFV------DLSRNMLEG-DASVLFGSDKNTQKIHL  228 (313)
T ss_dssp             -EEEC----------C-------------------GGGGGC-CCSEE------ECCSSEEEE-CCGGGCCTTSCCSEEEC
T ss_pred             -cccc----------c-------------------cccccc-ccccc------ccccccccc-ccccccccccccccccc
Confidence             0000          0                   000011 11223      333333222 22223356677888887


Q ss_pred             cCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEccccccc-ccccccCCCCCCccCccccccC
Q 038576          247 FMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMIT-EIVADEDDEGDNYAAQDEIVFS  325 (411)
Q Consensus       247 ~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~~~~~~~~~  325 (411)
                      .++.. ...++....+++|+.|++++|.....+|.  .++.+++|++|+++++. ++ .++. .            ..++
T Consensus       229 ~~~~l-~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~--~l~~L~~L~~L~Ls~N~-l~g~iP~-~------------~~L~  291 (313)
T d1ogqa_         229 AKNSL-AFDLGKVGLSKNLNGLDLRNNRIYGTLPQ--GLTQLKFLHSLNVSFNN-LCGEIPQ-G------------GNLQ  291 (313)
T ss_dssp             CSSEE-CCBGGGCCCCTTCCEEECCSSCCEECCCG--GGGGCTTCCEEECCSSE-EEEECCC-S------------TTGG
T ss_pred             ccccc-cccccccccccccccccCccCeecccCCh--HHhCCCCCCEEECcCCc-ccccCCC-c------------ccCC
Confidence            77543 33333333377888888877754434432  35677888888888765 43 3332 1            1256


Q ss_pred             CCCeeecCCCcCC
Q 038576          326 ELKELNLSNLQSL  338 (411)
Q Consensus       326 ~L~~L~l~~c~~l  338 (411)
                      +|+.+++.+.+.+
T Consensus       292 ~L~~l~l~~N~~l  304 (313)
T d1ogqa_         292 RFDVSAYANNKCL  304 (313)
T ss_dssp             GSCGGGTCSSSEE
T ss_pred             CCCHHHhCCCccc
Confidence            6666666665433

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.75  E-value=4.8e-17  Score=147.02  Aligned_cols=273  Identities=16%  Similarity=0.174  Sum_probs=190.0

Q ss_pred             cCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccccccCccccccccccccchhhc
Q 038576           37 KLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDEL  116 (411)
Q Consensus        37 ~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l  116 (411)
                      .++.+|-++.+++.+|..+.  +++++|++++ +.++.+|...+.++++|++|++++|.+..            ..+..+
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~-N~i~~l~~~~f~~l~~L~~L~l~~n~~~~------------i~~~~f   75 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQN-NKITEIKDGDFKNLKNLHTLILINNKISK------------ISPGAF   75 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSSCCCC------------BCTTTT
T ss_pred             cCCEEEecCCCCCccCCCCC--CCCCEEECcC-CcCCCcChhHhhccccccccccccccccc------------cchhhh
Confidence            67888888888999998764  6899999999 68999997669999999999999998875            344778


Q ss_pred             cCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCCccceeEEEecCCcccccccccccccccchhccc
Q 038576          117 NNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTS  196 (411)
Q Consensus       117 ~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~  196 (411)
                      .++++|+++++.+|....+|...  ...++.|....+.....+..                                   
T Consensus        76 ~~l~~L~~L~l~~n~l~~l~~~~--~~~l~~L~~~~n~l~~l~~~-----------------------------------  118 (305)
T d1xkua_          76 APLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKS-----------------------------------  118 (305)
T ss_dssp             TTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECCSSCCCBBCHH-----------------------------------
T ss_pred             hCCCccCEecccCCccCcCccch--hhhhhhhhccccchhhhhhh-----------------------------------
Confidence            99999999999999988888654  45677776543322211100                                   


Q ss_pred             CCCccccccccchhhhchHhhhcccccccc-ccccccccccCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCC
Q 038576          197 GGDSEALYTSFKNVENGMEAMMRGINHRRE-LKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHG  275 (411)
Q Consensus       197 ~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~-l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~  275 (411)
                            .+.....+..+      ....+.. ...........+++|+.++++++. +...+. .. +++|+.|++.++..
T Consensus       119 ------~~~~~~~~~~l------~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~~-~~-~~~L~~L~l~~n~~  183 (305)
T d1xkua_         119 ------VFNGLNQMIVV------ELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQ-GL-PPSLTELHLDGNKI  183 (305)
T ss_dssp             ------HHTTCTTCCEE------ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCS-SC-CTTCSEEECTTSCC
T ss_pred             ------hhhcccccccc------ccccccccccCCCccccccccccCccccccCC-ccccCc-cc-CCccCEEECCCCcC
Confidence                  00011222233      3332221 111112223567889999998854 333322 22 88999999998876


Q ss_pred             CccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCc
Q 038576          276 MINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSL  355 (411)
Q Consensus       276 l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L  355 (411)
                      .... + .....++.++.|+++++. ++++...           .+..+++|++|+++++ +++++|..   . ..+++|
T Consensus       184 ~~~~-~-~~~~~~~~l~~L~~s~n~-l~~~~~~-----------~~~~l~~L~~L~L~~N-~L~~lp~~---l-~~l~~L  244 (305)
T d1xkua_         184 TKVD-A-ASLKGLNNLAKLGLSFNS-ISAVDNG-----------SLANTPHLRELHLNNN-KLVKVPGG---L-ADHKYI  244 (305)
T ss_dssp             CEEC-T-GGGTTCTTCCEEECCSSC-CCEECTT-----------TGGGSTTCCEEECCSS-CCSSCCTT---T-TTCSSC
T ss_pred             CCCC-h-hHhhcccccccccccccc-ccccccc-----------cccccccceeeecccc-cccccccc---c-ccccCC
Confidence            5543 2 346788999999999875 6666443           3346899999999998 68888422   2 347999


Q ss_pred             ceEeecCCCCCccccCCC-------CCCCCceEEEEeccccchhcccCCc
Q 038576          356 ERLVVNRCPNMKIFSEGE-------LSTPKLQKVQMSLVDEKLWAWDRDL  398 (411)
Q Consensus       356 ~~L~i~~C~~l~~~p~~~-------~~~~~L~~l~l~~~c~~l~~~~~~~  398 (411)
                      ++|+++++ +++.++...       ...++|+.|.+.+|.-+.  |..+.
T Consensus       245 ~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~--~~~~~  291 (305)
T d1xkua_         245 QVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY--WEIQP  291 (305)
T ss_dssp             CEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG--GGSCG
T ss_pred             CEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCcCcc--CcCCH
Confidence            99999995 688886532       246889999997665443  55433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.71  E-value=1.1e-15  Score=140.45  Aligned_cols=300  Identities=18%  Similarity=0.118  Sum_probs=168.9

Q ss_pred             ccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEec
Q 038576           14 QNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIG   92 (411)
Q Consensus        14 ~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~   92 (411)
                      .++++|++++++++. |+.   .++|++|++++|.|+.+|..+   .+|+.|++++ +.++.++.  +  .+.|++|+++
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~-n~l~~l~~--l--p~~L~~L~L~  106 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPELP---QSLKSLLVDN-NNLKALSD--L--PPLLEYLGVS  106 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCC---TTCCEEECCS-SCCSCCCS--C--CTTCCEEECC
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccch---hhhhhhhhhh-cccchhhh--h--cccccccccc
Confidence            579999999999988 653   468999999999999998654   5789999998 56776653  2  2469999999


Q ss_pred             ccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCCccceeEEEe
Q 038576           93 QSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKL  172 (411)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~  172 (411)
                      +|.+..              ...++++++|+++++.++.....+..   ...+..+.+................+..+.+
T Consensus       107 ~n~l~~--------------lp~~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l  169 (353)
T d1jl5a_         107 NNQLEK--------------LPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELPELQNLPFLTAIYA  169 (353)
T ss_dssp             SSCCSS--------------CCCCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEEC
T ss_pred             cccccc--------------ccchhhhccceeeccccccccccccc---cccccchhhccccccccccccccccceeccc
Confidence            998742              23467889999999998876666543   3455556554444333333334555556655


Q ss_pred             cCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCC
Q 038576          173 TNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNL  252 (411)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l  252 (411)
                      ..+.......... ....+...............++.|+.+      .+.++. ...++    ....++..+.+.+....
T Consensus       170 ~~n~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~l~~L~~l------~l~~n~-~~~~~----~~~~~l~~~~~~~~~~~  237 (353)
T d1jl5a_         170 DNNSLKKLPDLPL-SLESIVAGNNILEELPELQNLPFLTTI------YADNNL-LKTLP----DLPPSLEALNVRDNYLT  237 (353)
T ss_dssp             CSSCCSSCCCCCT-TCCEEECCSSCCSSCCCCTTCTTCCEE------ECCSSC-CSSCC----SCCTTCCEEECCSSCCS
T ss_pred             ccccccccccccc-ccccccccccccccccccccccccccc------cccccc-ccccc----ccccccccccccccccc
Confidence            4432221111100 000000000001111122345566666      555543 12221    12344555555442211


Q ss_pred             ccCCCCCCCCCCcCeEeecCCCC--Ccccc------------chHhhhccccccEEeEcccccccccccccCCCCCCccC
Q 038576          253 THLVPSSTSFQNLTTLTVWGCHG--MINVL------------TSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAA  318 (411)
Q Consensus       253 ~~~~~~~~~~~~L~~L~l~~c~~--l~~~~------------~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~  318 (411)
                       .....   .++++..++..+..  +..++            .......+++|++|++++|. +++++.           
T Consensus       238 -~~~~~---~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~-----------  301 (353)
T d1jl5a_         238 -DLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELPA-----------  301 (353)
T ss_dssp             -CCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC-CSCCCC-----------
T ss_pred             -ccccc---cccccccccccccccccccccchhcccccccCccccccccCCCCCEEECCCCc-cCcccc-----------
Confidence             11111   22222222221110  00000            00012346788888888875 665542           


Q ss_pred             ccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCCCceEEEEe
Q 038576          319 QDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMS  385 (411)
Q Consensus       319 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~  385 (411)
                          .+++|+.|+++++ .++++|.   .    .++|++|++++|+ ++.+|.   .+++|+.|++.
T Consensus       302 ----~~~~L~~L~L~~N-~L~~l~~---~----~~~L~~L~L~~N~-L~~lp~---~~~~L~~L~~~  352 (353)
T d1jl5a_         302 ----LPPRLERLIASFN-HLAEVPE---L----PQNLKQLHVEYNP-LREFPD---IPESVEDLRMN  352 (353)
T ss_dssp             ----CCTTCCEEECCSS-CCSCCCC---C----CTTCCEEECCSSC-CSSCCC---CCTTCCEEECC
T ss_pred             ----ccCCCCEEECCCC-cCCcccc---c----cCCCCEEECcCCc-CCCCCc---cccccCeeECc
Confidence                2678888888876 5777731   1    3678888888875 888876   25677877763

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.69  E-value=3e-17  Score=148.96  Aligned_cols=234  Identities=21%  Similarity=0.167  Sum_probs=164.3

Q ss_pred             CCChhhhccccCcEEEecC-CcCC-C-CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCcccc
Q 038576            5 ALPSSLGLLQNLQTLSLDD-CELG-D-MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPPNVI   80 (411)
Q Consensus         5 ~lp~~l~~l~~L~~L~l~~-~~l~-~-~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~~~l   80 (411)
                      .+|++++++++|++|++++ |.+. . |+.++++++|++|++++|++..+ +..+..+.+|+++++++|.....+|.. +
T Consensus        67 ~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~-l  145 (313)
T d1ogqa_          67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-I  145 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG-G
T ss_pred             CCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchh-h
Confidence            5899999999999999998 5676 4 89999999999999999999855 556889999999999997666777776 9


Q ss_pred             cCCCCccEEEecccccccCccccccccccccchhhccCCCCC-CEEEEeeccCCc-CCcccccCCCCcEEEEEecCCccc
Q 038576           81 SSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKL-TSLEILIQDEKT-LPRDLSFFKMLQRYRILIGDSREY  158 (411)
Q Consensus        81 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L-~~L~l~~~~~~~-~~~~l~~~~~L~~L~i~~~~~~~~  158 (411)
                      +++++|+++++++|.+..            ..+..+..+.++ +.+.+..+.... .|..+..+.. ..+.+..+...  
T Consensus       146 ~~l~~L~~l~l~~n~l~~------------~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~~--  210 (313)
T d1ogqa_         146 SSLPNLVGITFDGNRISG------------AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNMLE--  210 (313)
T ss_dssp             GGCTTCCEEECCSSCCEE------------ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEEE--
T ss_pred             ccCcccceeecccccccc------------cccccccccccccccccccccccccccccccccccc-ccccccccccc--
Confidence            999999999999998876            344777777776 778888776443 3444433332 23433211000  


Q ss_pred             cCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCC
Q 038576          159 DAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNA  238 (411)
Q Consensus       159 ~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~  238 (411)
                                                  +           ........+++++.+      .+.++.....++  ....+
T Consensus       211 ----------------------------~-----------~~~~~~~~~~~l~~l------~~~~~~l~~~~~--~~~~~  243 (313)
T d1ogqa_         211 ----------------------------G-----------DASVLFGSDKNTQKI------HLAKNSLAFDLG--KVGLS  243 (313)
T ss_dssp             ----------------------------E-----------CCGGGCCTTSCCSEE------ECCSSEECCBGG--GCCCC
T ss_pred             ----------------------------c-----------ccccccccccccccc------cccccccccccc--ccccc
Confidence                                        0           000012245677777      777765332332  34578


Q ss_pred             CCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccc
Q 038576          239 KDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITE  304 (411)
Q Consensus       239 ~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~  304 (411)
                      ++|+.|+++++.-....+.....+++|++|+|++|.....+|.   .+.+++|+.+++.+++.+..
T Consensus       244 ~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~---~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ---GGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC---STTGGGSCGGGTCSSSEEES
T ss_pred             cccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC---cccCCCCCHHHhCCCccccC
Confidence            8999999998543334444445589999999998754335532   36778888888888765443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.7e-16  Score=138.91  Aligned_cols=210  Identities=18%  Similarity=0.208  Sum_probs=111.0

Q ss_pred             CCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCCCCccccCccc
Q 038576            3 LLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVIPPNV   79 (411)
Q Consensus         3 l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~~~~~   79 (411)
                      ++.+|..+.  .++++|+|++|.++.  +..|.++++|++|+++++.+..++.. +..+..++.+....++.+..++...
T Consensus        23 L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~  100 (284)
T d1ozna_          23 LQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT  100 (284)
T ss_dssp             CSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT
T ss_pred             CCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchh
Confidence            445555443  355666666666655  23456666666666666665544332 3455566666555545555555444


Q ss_pred             ccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc-cccCCCCcEEEEEecCCccc
Q 038576           80 ISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRILIGDSREY  158 (411)
Q Consensus        80 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~i~~~~~~~~  158 (411)
                      ++.+++|++|++++|.+..            .....+....+|+.+++.+|.+..++.. +..++               
T Consensus       101 ~~~l~~L~~L~l~~n~~~~------------~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~---------------  153 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQE------------LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG---------------  153 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCC------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT---------------
T ss_pred             hcccccCCEEecCCccccc------------ccccccchhcccchhhhccccccccChhHhcccc---------------
Confidence            5666666666666655432            2224444555555555555555444332 23333               


Q ss_pred             cCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCC
Q 038576          159 DAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNA  238 (411)
Q Consensus       159 ~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~  238 (411)
                                                                        +|++|      ++.++. ++.++......+
T Consensus       154 --------------------------------------------------~L~~L------~l~~N~-l~~l~~~~f~~l  176 (284)
T d1ozna_         154 --------------------------------------------------NLTHL------FLHGNR-ISSVPERAFRGL  176 (284)
T ss_dssp             --------------------------------------------------TCCEE------ECCSSC-CCEECTTTTTTC
T ss_pred             --------------------------------------------------chhhc------ccccCc-ccccchhhhccc
Confidence                                                              44444      444432 444444344456


Q ss_pred             CCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccc
Q 038576          239 KDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCV  300 (411)
Q Consensus       239 ~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  300 (411)
                      ++|+.+.++++....-.+.....+++|+.|+++++.. +.+ +...++.+++|++|++++++
T Consensus       177 ~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i-~~~-~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL-SAL-PTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SCC-CHHHHTTCTTCCEEECCSSC
T ss_pred             cccchhhhhhccccccChhHhhhhhhccccccccccc-ccc-cccccccccccCEEEecCCC
Confidence            6667777766433322223333466777777766543 333 22345667777777776643

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.1e-16  Score=139.84  Aligned_cols=122  Identities=21%  Similarity=0.168  Sum_probs=92.2

Q ss_pred             ccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCccEE
Q 038576           12 LLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEEL   89 (411)
Q Consensus        12 ~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L   89 (411)
                      +...+..++-++++++. |+.+.  +++++|+|++|.|+.+|. .+.++++|++|++++ +.++.++.  ++.+++|++|
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~-N~l~~l~~--~~~l~~L~~L   82 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR-AELTKLQV--DGTLPVLGTL   82 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT-SCCCEEEC--CSCCTTCCEE
T ss_pred             ccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccc-cccccccc--cccccccccc
Confidence            44556667888888888 76664  578999999999988774 588899999999999 57888875  6789999999


Q ss_pred             EecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc-cccCCCCcEEEEE
Q 038576           90 YIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRIL  151 (411)
Q Consensus        90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~i~  151 (411)
                      ++++|.+..             ....+..+++|+.++++++....++.. +..+.+++.|.+.
T Consensus        83 ~Ls~N~l~~-------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~  132 (266)
T d1p9ag_          83 DLSHNQLQS-------------LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK  132 (266)
T ss_dssp             ECCSSCCSS-------------CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECT
T ss_pred             ccccccccc-------------cccccccccccccccccccccceeecccccccccccccccc
Confidence            999988753             335677888999999988876655443 3445566666553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=7.2e-16  Score=132.94  Aligned_cols=116  Identities=16%  Similarity=0.315  Sum_probs=73.8

Q ss_pred             CcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccc
Q 038576           16 LQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSP   95 (411)
Q Consensus        16 L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~   95 (411)
                      +..++++.+.+++...+..+.+|++|++.+|++++++ .++++++|++|++++ +.+..++.  +.++++|+++++++|.
T Consensus        21 ~~~~~l~~~~~~d~~~~~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~-n~i~~~~~--l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          21 AIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKD-NQITDLAP--LKNLTKITELELSGNP   96 (227)
T ss_dssp             HHHHHTTCSSTTSEECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCS-SCCCCCGG--GTTCCSCCEEECCSCC
T ss_pred             HHHHHhCCCCcCCcCCHHHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCC-ceeecccc--cccccccccccccccc
Confidence            3344555555666445566777788888887777774 577788888888877 45666554  6777788888877776


Q ss_pred             cccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEE
Q 038576           96 IQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRI  150 (411)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i  150 (411)
                      ++              ....+.++++|+.++++++....++ .+...+.++.+.+
T Consensus        97 ~~--------------~i~~l~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~l~~  136 (227)
T d1h6ua2          97 LK--------------NVSAIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYL  136 (227)
T ss_dssp             CS--------------CCGGGTTCTTCCEEECTTSCCCCCG-GGTTCTTCCEEEC
T ss_pred             cc--------------ccccccccccccccccccccccccc-hhccccchhhhhc
Confidence            53              2245667777777777766544332 2234445555443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.7e-15  Score=132.52  Aligned_cols=198  Identities=15%  Similarity=0.120  Sum_probs=138.3

Q ss_pred             ccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccccccCccccccccccccch
Q 038576           34 DLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASL  113 (411)
Q Consensus        34 ~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  113 (411)
                      +...+...+.++++++.+|..+.  +++++|+|++ +.++.+|.+.+.++++|++|++++|.+..  +            
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~-N~i~~l~~~~f~~l~~L~~L~L~~N~l~~--l------------   70 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSE-NLLYTFSLATLMPYTRLTQLNLDRAELTK--L------------   70 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTT-SCCSEEEGGGGTTCTTCCEEECTTSCCCE--E------------
T ss_pred             ccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcC-CcCCCcCHHHhhccccccccccccccccc--c------------
Confidence            44566677899999999997764  5899999999 78999987779999999999999998753  2            


Q ss_pred             hhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCCccceeEEEecCCcccccccccccccccchh
Q 038576          114 DELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIED  193 (411)
Q Consensus       114 ~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~  193 (411)
                      ..++.+++|++|++++|....++..+..+++|+.|++..+.....+..                                
T Consensus        71 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--------------------------------  118 (266)
T d1p9ag_          71 QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG--------------------------------  118 (266)
T ss_dssp             ECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSS--------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccceeecc--------------------------------
Confidence            345678999999999999888888888899999998864443321111                                


Q ss_pred             cccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCCccCCC-CCCCCCCcCeEeecC
Q 038576          194 LTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVP-SSTSFQNLTTLTVWG  272 (411)
Q Consensus       194 ~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~  272 (411)
                               ....+.++++|      .+.++. +..++......+++++.++++++ .+...++ ....+++|+.|+|++
T Consensus       119 ---------~~~~l~~l~~L------~l~~n~-l~~l~~~~~~~l~~l~~l~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~  181 (266)
T d1p9ag_         119 ---------ALRGLGELQEL------YLKGNE-LKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQE  181 (266)
T ss_dssp             ---------TTTTCTTCCEE------ECTTSC-CCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred             ---------ccccccccccc------cccccc-cceeccccccccccchhcccccc-cccccCccccccccccceeeccc
Confidence                     01234556666      666543 45555544456677777777774 3443332 233477777777777


Q ss_pred             CCCCccccchHhhhccccccEEeEcccc
Q 038576          273 CHGMINVLTSSTARSLVRLRQMTIKVCV  300 (411)
Q Consensus       273 c~~l~~~~~~~~~~~l~~L~~L~l~~c~  300 (411)
                      |. ++.++..  +..+++|+.|++++++
T Consensus       182 N~-L~~lp~~--~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         182 NS-LYTIPKG--FFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             SC-CCCCCTT--TTTTCCCSEEECCSCC
T ss_pred             CC-CcccChh--HCCCCCCCEEEecCCC
Confidence            64 5565432  3456777777777644

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=5.9e-16  Score=133.51  Aligned_cols=82  Identities=26%  Similarity=0.336  Sum_probs=44.9

Q ss_pred             hccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEE
Q 038576           11 GLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELY   90 (411)
Q Consensus        11 ~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~   90 (411)
                      .++.+|+.|++.+|++++.+.++.+++|++|++++|.++.+++ +.++++|+++++++ +.++.++.  ++++++|++++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~-n~~~~i~~--l~~l~~L~~l~  113 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSG-NPLKNVSA--IAGLQSIKTLD  113 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCS-CCCSCCGG--GTTCTTCCEEE
T ss_pred             HHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccc-cccccccccccccc-cccccccc--ccccccccccc
Confidence            4455556666666555554445555666666666655554432 55555666666555 34444442  55556666665


Q ss_pred             eccccc
Q 038576           91 IGQSPI   96 (411)
Q Consensus        91 l~~~~~   96 (411)
                      ++++..
T Consensus       114 l~~~~~  119 (227)
T d1h6ua2         114 LTSTQI  119 (227)
T ss_dssp             CTTSCC
T ss_pred             cccccc
Confidence            555543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.60  E-value=1.1e-13  Score=126.80  Aligned_cols=279  Identities=18%  Similarity=0.167  Sum_probs=153.0

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVI   80 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l   80 (411)
                      .++.+|+.   ..+|++|++++|.++. |..+   .+|+.|++++++++.++..   .+.|++|++++ +.+..+|.  +
T Consensus        49 ~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~-n~l~~lp~--~  116 (353)
T d1jl5a_          49 GLSSLPEL---PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDL---PPLLEYLGVSN-NQLEKLPE--L  116 (353)
T ss_dssp             CCSCCCSC---CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSC---CTTCCEEECCS-SCCSSCCC--C
T ss_pred             CCCCCCCC---CCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhh---ccccccccccc-cccccccc--h
Confidence            46778865   4689999999999998 6554   5899999999988866531   24699999999 67899986  6


Q ss_pred             cCCCCccEEEecccccccCcccccccc--------ccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEe
Q 038576           81 SSLSRLEELYIGQSPIQWGKVEGVDGE--------RRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILI  152 (411)
Q Consensus        81 ~~L~~L~~L~l~~~~~~~~~~~~~~~~--------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~  152 (411)
                      +.+++|++++++++.+..  .+.....        ........+..++.++.+.+.++....++...   ...+.+....
T Consensus       117 ~~l~~L~~L~l~~~~~~~--~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~---~~~~~l~~~~  191 (353)
T d1jl5a_         117 QNSSFLKIIDVDNNSLKK--LPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGN  191 (353)
T ss_dssp             TTCTTCCEEECCSSCCSC--CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCS
T ss_pred             hhhccceeeccccccccc--cccccccccchhhccccccccccccccccceeccccccccccccccc---cccccccccc
Confidence            899999999999987653  1111000        01112233444555566665555443333211   1122222222


Q ss_pred             cCCccccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhcccccccccccccc
Q 038576          153 GDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFK  232 (411)
Q Consensus       153 ~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~  232 (411)
                      .....++.+.....+..+.+..+......                       ....++..+      .+...... ....
T Consensus       192 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~~-----------------------~~~~~l~~~------~~~~~~~~-~~~~  241 (353)
T d1jl5a_         192 NILEELPELQNLPFLTTIYADNNLLKTLP-----------------------DLPPSLEAL------NVRDNYLT-DLPE  241 (353)
T ss_dssp             SCCSSCCCCTTCTTCCEEECCSSCCSSCC-----------------------SCCTTCCEE------ECCSSCCS-CCCC
T ss_pred             ccccccccccccccccccccccccccccc-----------------------ccccccccc------cccccccc-cccc
Confidence            22222333333444444444322111100                       001111111      11111100 0000


Q ss_pred             ---------------ccccC-CCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeE
Q 038576          233 ---------------QESSN-AKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTI  296 (411)
Q Consensus       233 ---------------~~~~~-~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l  296 (411)
                                     ..... .......++.. ..+...   ...+++|++|++++|. ++.++     ..+++|+.|++
T Consensus       242 ~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~---~~~~~~L~~L~Ls~N~-l~~lp-----~~~~~L~~L~L  311 (353)
T d1jl5a_         242 LPQSLTFLDVSENIFSGLSELPPNLYYLNASS-NEIRSL---CDLPPSLEELNVSNNK-LIELP-----ALPPRLERLIA  311 (353)
T ss_dssp             CCTTCCEEECCSSCCSEESCCCTTCCEEECCS-SCCSEE---CCCCTTCCEEECCSSC-CSCCC-----CCCTTCCEEEC
T ss_pred             ccccccccccccccccccccccchhccccccc-Cccccc---cccCCCCCEEECCCCc-cCccc-----cccCCCCEEEC
Confidence                           00000 11222222322 111221   1227899999998874 55654     34789999999


Q ss_pred             cccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeec
Q 038576          297 KVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVN  361 (411)
Q Consensus       297 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~  361 (411)
                      ++|. +++++.               ..++|++|++++++ ++++|..+       .+|+.|++.
T Consensus       312 ~~N~-L~~l~~---------------~~~~L~~L~L~~N~-L~~lp~~~-------~~L~~L~~~  352 (353)
T d1jl5a_         312 SFNH-LAEVPE---------------LPQNLKQLHVEYNP-LREFPDIP-------ESVEDLRMN  352 (353)
T ss_dssp             CSSC-CSCCCC---------------CCTTCCEEECCSSC-CSSCCCCC-------TTCCEEECC
T ss_pred             CCCc-CCcccc---------------ccCCCCEEECcCCc-CCCCCccc-------cccCeeECc
Confidence            8875 766643               25689999999986 88884321       578888764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.4e-14  Score=124.40  Aligned_cols=118  Identities=19%  Similarity=0.274  Sum_probs=79.3

Q ss_pred             cEEEecCCcCCC-CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEeccc
Q 038576           17 QTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQS   94 (411)
Q Consensus        17 ~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~   94 (411)
                      +.++.++.+++. |..+.  +++++|++++|+++.+|. .+.++++|++|++++|.....++..++..+++++++.+..+
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            677777777777 65543  578888888888887776 46788888888888865555566655778888888887653


Q ss_pred             -ccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEE
Q 038576           95 -PIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYR  149 (411)
Q Consensus        95 -~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~  149 (411)
                       .+..            .....+.++++|+++++.++.....+. ...+.+++.+.
T Consensus        89 n~l~~------------~~~~~~~~l~~L~~l~l~~~~l~~~~~-~~~~~~l~~l~  131 (242)
T d1xwdc1          89 NNLLY------------INPEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKVL  131 (242)
T ss_dssp             TTCCE------------ECTTSEECCTTCCEEEEESCCCCSCCC-CTTTCBSSCEE
T ss_pred             ccccc------------cccccccccccccccccchhhhccccc-ccccccccccc
Confidence             3332            233556777788888887776554433 23344444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=8.7e-15  Score=123.28  Aligned_cols=122  Identities=21%  Similarity=0.301  Sum_probs=74.2

Q ss_pred             hccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEE
Q 038576           11 GLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELY   90 (411)
Q Consensus        11 ~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~   90 (411)
                      .++.++++|+++++.+++.+.++.+++|++|++++|.++.+++ ++++++|++|++++ +.+..++.  ++.+++|++++
T Consensus        37 ~~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~-n~~~~~~~--l~~l~~L~~L~  112 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNN-NQIADITP--LANLTNLTGLT  112 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GTTCTTCSEEE
T ss_pred             HHhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCccc-ccCCcccccccccc-cccccccc--ccccccccccc
Confidence            3456667777777766665556666777777777776666654 66677777777766 34555553  66677777777


Q ss_pred             ecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEE
Q 038576           91 IGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRIL  151 (411)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~  151 (411)
                      ++++....              ...+..+++|+.+++++|....++ .+..+++|+.|.+.
T Consensus       113 l~~~~~~~--------------~~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~  158 (199)
T d2omxa2         113 LFNNQITD--------------IDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFS  158 (199)
T ss_dssp             CCSSCCCC--------------CGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECC
T ss_pred             cccccccc--------------ccccchhhhhHHhhhhhhhhcccc-cccccccccccccc
Confidence            76665432              234556666666666666554433 34455555555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=1.6e-14  Score=122.75  Aligned_cols=120  Identities=19%  Similarity=0.304  Sum_probs=67.6

Q ss_pred             ccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEe
Q 038576           12 LLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYI   91 (411)
Q Consensus        12 ~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l   91 (411)
                      ++.+|++|++++|.++....++.+++|++|++++|.++.++. ++++++|++|++++ +.+++++.  +..+++|+.+++
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~-n~i~~l~~--l~~l~~L~~L~l  119 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDE-NKVKDLSS--LKDLKKLKSLSL  119 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCGGG--GTTCTTCCEEEC
T ss_pred             HhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccc-cccCcccccccccc-cccccccc--cccccccccccc
Confidence            455666666666666664446666666666666666666553 55666666666666 35666553  566666666666


Q ss_pred             cccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEE
Q 038576           92 GQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRI  150 (411)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i  150 (411)
                      +++.+.              ....+..+++++.+++.++.....+ .+..+++|+.+.+
T Consensus       120 ~~~~~~--------------~~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l  163 (210)
T d1h6ta2         120 EHNGIS--------------DINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSL  163 (210)
T ss_dssp             TTSCCC--------------CCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEEC
T ss_pred             cccccc--------------ccccccccccccccccccccccccc-ccccccccccccc
Confidence            666542              1234555555666665555443322 2334444444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.9e-16  Score=139.30  Aligned_cols=58  Identities=22%  Similarity=0.210  Sum_probs=24.5

Q ss_pred             ccCcEEEeeCCccc--cchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEeccc
Q 038576           36 KKLVILALRGSDME--ELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQS   94 (411)
Q Consensus        36 ~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~   94 (411)
                      ..|++||+++|.++  .++..+.++++|++|++++|.--...+.. ++++++|++|++++|
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c  105 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGC  105 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTC
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH-HhcCCCCcCcccccc
Confidence            34555555544443  23333444555555555544211111222 444445555555443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.55  E-value=3.3e-14  Score=120.68  Aligned_cols=150  Identities=24%  Similarity=0.364  Sum_probs=123.3

Q ss_pred             CCCCChhhhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccC
Q 038576            3 LLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISS   82 (411)
Q Consensus         3 l~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~   82 (411)
                      ++.++ .+..+++|++|++++|.+++.+.++++++|++|++++|+++.+| .++++++|++|++++| .+..++.  +..
T Consensus        58 i~~l~-~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~-~~~~~~~--l~~  132 (210)
T d1h6ta2          58 IKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHN-GISDING--LVH  132 (210)
T ss_dssp             CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTS-CCCCCGG--GGG
T ss_pred             CCCch-hHhhCCCCCEEeCCCccccCccccccCccccccccccccccccc-cccccccccccccccc-ccccccc--ccc
Confidence            34454 57899999999999999999556889999999999999999987 5889999999999994 5666654  889


Q ss_pred             CCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcC
Q 038576           83 LSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWD  162 (411)
Q Consensus        83 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~  162 (411)
                      +++++.++++++.+..              ...+.++++|+++++++|....++. +..+++|++|+++.+....++.+.
T Consensus       133 l~~l~~l~~~~n~l~~--------------~~~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~~l~~l~  197 (210)
T d1h6ta2         133 LPQLESLYLGNNKITD--------------ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALA  197 (210)
T ss_dssp             CTTCCEEECCSSCCCC--------------CGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGGT
T ss_pred             cccccccccccccccc--------------ccccccccccccccccccccccccc-ccCCCCCCEEECCCCCCCCChhhc
Confidence            9999999999988743              3456778999999999998877654 778999999999877766666666


Q ss_pred             CccceeEEEe
Q 038576          163 GISRISKLKL  172 (411)
Q Consensus       163 ~~~~l~~L~~  172 (411)
                      .+.+++.|++
T Consensus       198 ~l~~L~~L~L  207 (210)
T d1h6ta2         198 GLKNLDVLEL  207 (210)
T ss_dssp             TCTTCSEEEE
T ss_pred             CCCCCCEEEc
Confidence            6667777765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.7e-15  Score=133.72  Aligned_cols=225  Identities=15%  Similarity=0.093  Sum_probs=141.5

Q ss_pred             cEEEecCCcCCCCcccccc--ccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEeccc
Q 038576           17 QTLSLDDCELGDMAIIGDL--KKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQS   94 (411)
Q Consensus        17 ~~L~l~~~~l~~~~~l~~l--~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~   94 (411)
                      +.+|++++.+.. +.++.+  .....+.+.++.+...........+|++|++++|....+....++.++++|++|++++|
T Consensus         3 ~~lDLs~~~l~~-~~l~~l~~~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~   81 (284)
T d2astb2           3 QTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL   81 (284)
T ss_dssp             SEEECTTCBCCH-HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC
T ss_pred             CEEECCCCCCCc-hHHHHHHhccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccccc
Confidence            478888876543 222211  24556666665544333334466789999999864333333344788999999999998


Q ss_pred             ccccCccccccccccccchhhccCCCCCCEEEEeecc-CCc--CCcccccCCCCcEEEEEecCCccccCcCCccceeEEE
Q 038576           95 PIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQD-EKT--LPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLK  171 (411)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~--~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~  171 (411)
                      .+..            ..+..+.++++|++|++++|. ...  +......+++|++|+++++.......           
T Consensus        82 ~l~~------------~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~-----------  138 (284)
T d2astb2          82 RLSD------------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH-----------  138 (284)
T ss_dssp             BCCH------------HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH-----------
T ss_pred             CCCc------------HHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccccccccccccccc-----------
Confidence            7654            455778888999999998875 221  22223467889998876433210000           


Q ss_pred             ecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccc-ccccccc-ccccCCCCCcEEEecCC
Q 038576          172 LTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRR-ELKQIFK-QESSNAKDLEKLSIFMC  249 (411)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~-~l~~~~~-~~~~~~~~L~~L~l~~c  249 (411)
                                         +...        ....+++|+.|      .+.++. .+++... .....+|+|++|++++|
T Consensus       139 -------------------~~~~--------~~~~~~~L~~L------~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~  185 (284)
T d2astb2         139 -------------------VQVA--------VAHVSETITQL------NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS  185 (284)
T ss_dssp             -------------------HHHH--------HHHSCTTCCEE------ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC
T ss_pred             -------------------chhh--------hcccccccchh------hhcccccccccccccccccccccccccccccc
Confidence                               0000        01134678888      887763 3333211 11246789999999998


Q ss_pred             cCCcc-CCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEccc
Q 038576          250 DNLTH-LVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVC  299 (411)
Q Consensus       250 ~~l~~-~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c  299 (411)
                      ..+++ .......+++|++|++++|..+++... ..++.+|+|+.|++.+|
T Consensus       186 ~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l-~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         186 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTS
T ss_pred             cCCCchhhhhhcccCcCCEEECCCCCCCChHHH-HHHhcCCCCCEEeeeCC
Confidence            87742 222233489999999999988877533 34577899999999987

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.52  E-value=6.6e-14  Score=117.76  Aligned_cols=137  Identities=21%  Similarity=0.364  Sum_probs=113.2

Q ss_pred             CCCCChhhhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccC
Q 038576            3 LLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISS   82 (411)
Q Consensus         3 l~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~   82 (411)
                      +++++ .+..+++|++|++++|.++....++++++|++|++++|.+..++. ++++++|++|++++| ....++.  +..
T Consensus        52 i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l~~~-~~~~~~~--~~~  126 (199)
T d2omxa2          52 IKSID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN-QITDIDP--LKN  126 (199)
T ss_dssp             CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEECCSS-CCCCCGG--GTT
T ss_pred             CCCcc-ccccCCCcCcCccccccccCcccccCCcccccccccccccccccc-ccccccccccccccc-ccccccc--cch
Confidence            34443 578999999999999999985559999999999999999888874 889999999999985 5555543  789


Q ss_pred             CCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCcccc
Q 038576           83 LSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYD  159 (411)
Q Consensus        83 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~  159 (411)
                      +++|+.+++++|.+..              ...+..+++|+++++.+|....++ .++.+++|++|+++.+....++
T Consensus       127 l~~L~~L~l~~n~l~~--------------~~~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~i~~i~  188 (199)
T d2omxa2         127 LTNLNRLELSSNTISD--------------ISALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNKVSDIS  188 (199)
T ss_dssp             CTTCSEEECCSSCCCC--------------CGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG
T ss_pred             hhhhHHhhhhhhhhcc--------------cccccccccccccccccccccCCc-cccCCCCCCEEECCCCCCCCCc
Confidence            9999999999998742              346888999999999999887775 4788999999999866654433

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=2.8e-14  Score=110.04  Aligned_cols=118  Identities=19%  Similarity=0.230  Sum_probs=97.4

Q ss_pred             cEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEeccccc
Q 038576           17 QTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPI   96 (411)
Q Consensus        17 ~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~   96 (411)
                      |+|++++|.++..+.++.+++|++|++++|.++.+|..++.+++|++|++++ +.++.+|.  ++++++|++|++++|.+
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~-N~i~~l~~--~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVDG--VANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCGG--GTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhccccccccc-ccccccCc--cccccccCeEECCCCcc
Confidence            6899999999996668999999999999999999998899999999999999 78888874  89999999999999988


Q ss_pred             ccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc---c-cccCCCCcEE
Q 038576           97 QWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR---D-LSFFKMLQRY  148 (411)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~-l~~~~~L~~L  148 (411)
                      ..  +         .....+..+++|+++++++|.....+.   . ...+++|+.+
T Consensus        78 ~~--~---------~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          78 QQ--S---------AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CS--S---------STTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CC--C---------CCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            63  1         223568889999999999988654432   2 2346777765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2e-13  Score=121.49  Aligned_cols=218  Identities=15%  Similarity=0.132  Sum_probs=134.4

Q ss_pred             EEEecCCcCCC-CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccc
Q 038576           18 TLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSP   95 (411)
Q Consensus        18 ~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~   95 (411)
                      .++.++++++. |..+.  .++++|+|++|+|+.+|. .+.++++|++|++++ +.+..++...+..+..+++++...+.
T Consensus        15 ~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~-n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHS-NVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccc-cccccccccccccccccccccccccc
Confidence            34555656666 55443  467778888887777764 477777788888877 56777766656667777777665433


Q ss_pred             cccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc-ccccCCCCcEEEEEecCCccccCcCCccceeEEEecC
Q 038576           96 IQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTN  174 (411)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~~~  174 (411)
                      ... .          ..+..+.++++|+++++.++....++. .+..+.                               
T Consensus        92 ~~~-~----------l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-------------------------------  129 (284)
T d1ozna_          92 QLR-S----------VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA-------------------------------  129 (284)
T ss_dssp             TCC-C----------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-------------------------------
T ss_pred             ccc-c----------ccchhhcccccCCEEecCCcccccccccccchhc-------------------------------
Confidence            211 1          123456666666666666655433322 222233                               


Q ss_pred             CcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCCcc
Q 038576          175 GANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTH  254 (411)
Q Consensus       175 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~  254 (411)
                                                        +|+.+      .+.++. ++.++...+..+++|++|+++++ .+..
T Consensus       130 ----------------------------------~L~~l------~l~~N~-l~~i~~~~f~~~~~L~~L~l~~N-~l~~  167 (284)
T d1ozna_         130 ----------------------------------ALQYL------YLQDNA-LQALPDDTFRDLGNLTHLFLHGN-RISS  167 (284)
T ss_dssp             ----------------------------------TCCEE------ECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCE
T ss_pred             ----------------------------------ccchh------hhcccc-ccccChhHhccccchhhcccccC-cccc
Confidence                                              34444      444432 34444434456788999999885 4444


Q ss_pred             CCC-CCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecC
Q 038576          255 LVP-SSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLS  333 (411)
Q Consensus       255 ~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  333 (411)
                      .++ ....+++|+.+.+.+|. ++.+.+ ..+..+++|++|+++++. +..++..           .+..+++|++|+++
T Consensus       168 l~~~~f~~l~~L~~l~l~~N~-l~~i~~-~~f~~l~~L~~L~l~~N~-i~~~~~~-----------~~~~~~~L~~L~l~  233 (284)
T d1ozna_         168 VPERAFRGLHSLDRLLLHQNR-VAHVHP-HAFRDLGRLMTLYLFANN-LSALPTE-----------ALAPLRALQYLRLN  233 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSC-CCEECT-TTTTTCTTCCEEECCSSC-CSCCCHH-----------HHTTCTTCCEEECC
T ss_pred             cchhhhccccccchhhhhhcc-ccccCh-hHhhhhhhcccccccccc-ccccccc-----------ccccccccCEEEec
Confidence            433 33448899999998775 444534 346788999999999876 5555432           23357889999988


Q ss_pred             CCc
Q 038576          334 NLQ  336 (411)
Q Consensus       334 ~c~  336 (411)
                      +-+
T Consensus       234 ~N~  236 (284)
T d1ozna_         234 DNP  236 (284)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            743

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.9e-13  Score=118.64  Aligned_cols=94  Identities=21%  Similarity=0.312  Sum_probs=79.9

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC-C-ccccccccCcEEEeeCCcccc-chH-HhcCCCCCCEEecCCCCCccccCc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD-M-AIIGDLKKLVILALRGSDMEE-LAG-EIGQLTQLRLLNLSKCFELKVIPP   77 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~-~-~~l~~l~~L~~L~L~~~~l~~-lp~-~i~~l~~L~~L~L~~c~~~~~~~~   77 (411)
                      .++++|..+.  .++++|++++|.++. + ..|.++++|++|++++|.+.. ++. .+.++++++++.+..++.+...+.
T Consensus        19 ~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~   96 (242)
T d1xwdc1          19 KVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP   96 (242)
T ss_dssp             SCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECT
T ss_pred             CCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccc
Confidence            4678887664  589999999999988 4 568999999999999998764 443 578899999999988788888887


Q ss_pred             ccccCCCCccEEEecccccc
Q 038576           78 NVISSLSRLEELYIGQSPIQ   97 (411)
Q Consensus        78 ~~l~~L~~L~~L~l~~~~~~   97 (411)
                      ..+.++++|++++++++.+.
T Consensus        97 ~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          97 EAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             TSEECCTTCCEEEEESCCCC
T ss_pred             ccccccccccccccchhhhc
Confidence            77899999999999998764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.2e-14  Score=116.19  Aligned_cols=128  Identities=16%  Similarity=0.162  Sum_probs=108.1

Q ss_pred             hhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCcc
Q 038576            9 SLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLE   87 (411)
Q Consensus         9 ~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~   87 (411)
                      .+.++..+|.|++++|+++. +..+..+++|++|++++|.++.++ .++.+++|++|++++ +.++.++..++..+++|+
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~-N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNN-NRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCS-SCCCEECSCHHHHCTTCC
T ss_pred             hccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhccc-ccccCCCccccccccccc
Confidence            35677889999999999999 666678999999999999999885 588999999999999 679999887667899999


Q ss_pred             EEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc----ccccCCCCcEEE
Q 038576           88 ELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR----DLSFFKMLQRYR  149 (411)
Q Consensus        88 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~  149 (411)
                      +|++++|.+..  +         .....+..+++|+++++.+|.....|.    .+..+++|+.|+
T Consensus        91 ~L~L~~N~i~~--~---------~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVE--L---------GDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCC--G---------GGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccc--c---------ccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            99999998753  1         223568889999999999998777764    367788999885

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.42  E-value=3.3e-13  Score=112.68  Aligned_cols=116  Identities=23%  Similarity=0.355  Sum_probs=72.5

Q ss_pred             CCCCChhhhccccCcEEEecCCcCCC---CccccccccCcEEEeeCCccccch-HHhcCCCCCCEEecCCCCCccccCcc
Q 038576            3 LLALPSSLGLLQNLQTLSLDDCELGD---MAIIGDLKKLVILALRGSDMEELA-GEIGQLTQLRLLNLSKCFELKVIPPN   78 (411)
Q Consensus         3 l~~lp~~l~~l~~L~~L~l~~~~l~~---~~~l~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~~~~~~~~   78 (411)
                      ++++|+.+.  .++++|+|++|.++.   ...|.++++|+.|++++|.+..++ ..+..+++|++|++++ +.++.++..
T Consensus        20 L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~-N~l~~l~~~   96 (192)
T d1w8aa_          20 LKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-NKIKEISNK   96 (192)
T ss_dssp             CSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-CCCCEECSS
T ss_pred             cCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc-ccccccCHH
Confidence            556665543  466777777776643   355666677777777777666443 3456667777777776 566666666


Q ss_pred             cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCC
Q 038576           79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEK  133 (411)
Q Consensus        79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  133 (411)
                      +|.++++|++|++++|.+..            ..+..+..+++|+++++++|...
T Consensus        97 ~F~~l~~L~~L~L~~N~l~~------------i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          97 MFLGLHQLKTLNLYDNQISC------------VMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SSTTCTTCCEEECCSSCCCE------------ECTTSSTTCTTCCEEECTTCCBC
T ss_pred             HHhCCCcccccccCCccccc------------cCHHHhcCCcccccccccccccc
Confidence            56667777777777776653            22345566666666666666543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.36  E-value=5.8e-15  Score=123.94  Aligned_cols=133  Identities=18%  Similarity=0.242  Sum_probs=106.7

Q ss_pred             CCCCChhhhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccC
Q 038576            3 LLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISS   82 (411)
Q Consensus         3 l~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~   82 (411)
                      ++.+|.++..+.+|++|++++|.+++.+.++.+++|++|++++|.++.+|.....+++|++|++++ +.++.++.  +..
T Consensus        37 i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~-N~i~~l~~--~~~  113 (198)
T d1m9la_          37 IEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY-NQIASLSG--IEK  113 (198)
T ss_dssp             CCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSE-EECCCHHH--HHH
T ss_pred             hhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhccccccccccccccccccccccccc-cccccccc--ccc
Confidence            567788899999999999999999886678999999999999999998887666677899999999 57888764  788


Q ss_pred             CCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc-----------cccCCCCcEEE
Q 038576           83 LSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-----------LSFFKMLQRYR  149 (411)
Q Consensus        83 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-----------l~~~~~L~~L~  149 (411)
                      +++|++|++++|.+..  +         .....+..+++|++|++++|.....+..           +..+++|+.|+
T Consensus       114 l~~L~~L~L~~N~i~~--~---------~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         114 LVNLRVLYMSNNKITN--W---------GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHSSEEEESEEECCC--H---------HHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccccchhcc--c---------cccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            9999999999998753  1         1235688999999999999864332211           45677787774

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=1.9e-12  Score=99.54  Aligned_cols=94  Identities=22%  Similarity=0.256  Sum_probs=83.1

Q ss_pred             CCCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCc-cc
Q 038576            2 HLLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPP-NV   79 (411)
Q Consensus         2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~-~~   79 (411)
                      +++.+| .+.++.+|++|++++|.++. |+.++.+++|++|++++|.++.+|. ++++++|++|++++ +.+..++. ..
T Consensus         9 ~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~-N~i~~~~~~~~   85 (124)
T d1dcea3           9 DLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCN-NRLQQSAAIQP   85 (124)
T ss_dssp             CCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS-SCCCSSSTTGG
T ss_pred             CCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc-cccccccCeEECCC-CccCCCCCchh
Confidence            466776 48999999999999999999 8889999999999999999999874 89999999999999 68887763 34


Q ss_pred             ccCCCCccEEEeccccccc
Q 038576           80 ISSLSRLEELYIGQSPIQW   98 (411)
Q Consensus        80 l~~L~~L~~L~l~~~~~~~   98 (411)
                      ++.+++|+++++++|++..
T Consensus        86 l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          86 LVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             GGGCTTCCEEECTTSGGGG
T ss_pred             hcCCCCCCEEECCCCcCCc
Confidence            7899999999999998753

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=4.7e-12  Score=102.23  Aligned_cols=113  Identities=21%  Similarity=0.186  Sum_probs=93.8

Q ss_pred             CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccccccCccccccccc
Q 038576           29 MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGER  108 (411)
Q Consensus        29 ~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~  108 (411)
                      .+.+.+...+|+|++++|+|+.++..+..+++|++|++++ +.+++++.  ++.+++|++|++++|.+..  +       
T Consensus        11 ~~~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~-N~i~~l~~--~~~l~~L~~L~ls~N~i~~--l-------   78 (162)
T d1a9na_          11 AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSD-NEIRKLDG--FPLLRRLKTLLVNNNRICR--I-------   78 (162)
T ss_dssp             SCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCS-SCCCEECC--CCCCSSCCEEECCSSCCCE--E-------
T ss_pred             hHhccCcCcCcEEECCCCCCCccCccccccccCCEEECCC-CCCCccCC--cccCcchhhhhcccccccC--C-------
Confidence            4556788899999999999999987778899999999999 68999964  8999999999999999864  2       


Q ss_pred             cccchhhccCCCCCCEEEEeeccCCcCCc--ccccCCCCcEEEEEecCCc
Q 038576          109 RNASLDELNNLSKLTSLEILIQDEKTLPR--DLSFFKMLQRYRILIGDSR  156 (411)
Q Consensus       109 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~i~~~~~~  156 (411)
                         ....+..+++|++|++++|.+..++.  .+..+++|+++++..+...
T Consensus        79 ---~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          79 ---GEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             ---CSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ---CccccccccccccceeccccccccccccccccccccchhhcCCCccc
Confidence               22345679999999999999877764  5778899999998755433

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.21  E-value=1.7e-11  Score=102.11  Aligned_cols=124  Identities=20%  Similarity=0.247  Sum_probs=103.9

Q ss_pred             cCcEEEecCCcCCC-CccccccccCcEEEeeCCcccc-ch-HHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEe
Q 038576           15 NLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEE-LA-GEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYI   91 (411)
Q Consensus        15 ~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~-lp-~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l   91 (411)
                      ..++++.++++++. |..+.  .++++|+|++|.|+. ++ ..++++++|++|++++ +.+..++.+.+..+++|++|++
T Consensus         9 ~~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~-N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_           9 EGTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKR-NQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccc-cccccccccccccccccceeee
Confidence            35688999999998 77664  689999999999974 43 4578999999999999 6788887777999999999999


Q ss_pred             cccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc-cccCCCCcEEEEEec
Q 038576           92 GQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRILIG  153 (411)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~i~~~  153 (411)
                      ++|.+..            -.+..|.++++|++|++++|.+..+++. +..+++|+++++..+
T Consensus        86 s~N~l~~------------l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          86 GENKIKE------------ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CSCCCCE------------ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             ccccccc------------cCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccc
Confidence            9998874            2346789999999999999998888765 678899999988644

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.2e-12  Score=122.05  Aligned_cols=109  Identities=17%  Similarity=0.219  Sum_probs=75.3

Q ss_pred             cCcEEEecCCcCCC---CccccccccCcEEEeeCCccc-----cchHHhcCCCCCCEEecCCCCCccccCccc----cc-
Q 038576           15 NLQTLSLDDCELGD---MAIIGDLKKLVILALRGSDME-----ELAGEIGQLTQLRLLNLSKCFELKVIPPNV----IS-   81 (411)
Q Consensus        15 ~L~~L~l~~~~l~~---~~~l~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~----l~-   81 (411)
                      +|+.|+++++++++   ...+..++++++|+|++|.++     .++..+..+++|++|++++ +.+++.+...    +. 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~-N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS-NELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTT-CCCHHHHHHHHHHTTCS
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcC-CcCChHHHHHHHHHHhc
Confidence            67888998888877   345667788889999998776     3455677888899999988 4565322111    22 


Q ss_pred             CCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccC
Q 038576           82 SLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDE  132 (411)
Q Consensus        82 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  132 (411)
                      ...+|++|++++|.++...+        ......+..+++|++|++++|..
T Consensus        82 ~~~~L~~L~L~~n~it~~~~--------~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGC--------GVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGH--------HHHHHHTTSCTTCCEEECCSSBC
T ss_pred             CCCCCCEEECCCCCcccccc--------ccccchhhccccccccccccccc
Confidence            23578999998887754111        12335667788889998888763

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=8.2e-10  Score=88.09  Aligned_cols=84  Identities=18%  Similarity=0.249  Sum_probs=48.9

Q ss_pred             cccCcEEEecCCcCCC-CccccccccCcEEEeeCC-ccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCccEE
Q 038576           13 LQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGS-DMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEEL   89 (411)
Q Consensus        13 l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~-~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L   89 (411)
                      +.....++.+++++.+ |..+..+++|++|+++++ .++.++. .|.++++|+.|++++ +.++.++..++..+++|++|
T Consensus         7 c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEE
T ss_pred             cCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeec-cccCCcccccccccccccce
Confidence            3344455666655555 555666666666666554 3555543 355666666666666 45666655556666666666


Q ss_pred             Eecccccc
Q 038576           90 YIGQSPIQ   97 (411)
Q Consensus        90 ~l~~~~~~   97 (411)
                      ++++|.+.
T Consensus        86 ~Ls~N~l~   93 (156)
T d2ifga3          86 NLSFNALE   93 (156)
T ss_dssp             ECCSSCCS
T ss_pred             eccCCCCc
Confidence            66666554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=7.4e-10  Score=88.38  Aligned_cols=92  Identities=23%  Similarity=0.227  Sum_probs=80.4

Q ss_pred             CCCCChhhhccccCcEEEecCCc-CCC--CccccccccCcEEEeeCCccccch-HHhcCCCCCCEEecCCCCCccccCcc
Q 038576            3 LLALPSSLGLLQNLQTLSLDDCE-LGD--MAIIGDLKKLVILALRGSDMEELA-GEIGQLTQLRLLNLSKCFELKVIPPN   78 (411)
Q Consensus         3 l~~lp~~l~~l~~L~~L~l~~~~-l~~--~~~l~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~~~~~~~~   78 (411)
                      +.++|..+..+.+|+.|+++++. ++.  +..|.++++|+.|++++|+++.++ ..+..+++|++|+|++ +.++.+|.+
T Consensus        20 ~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~l~~~   98 (156)
T d2ifga3          20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NALESLSWK   98 (156)
T ss_dssp             CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SCCSCCCST
T ss_pred             CccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC-CCCcccChh
Confidence            45778888899999999998775 887  577999999999999999999885 5589999999999999 789999988


Q ss_pred             cccCCCCccEEEeccccc
Q 038576           79 VISSLSRLEELYIGQSPI   96 (411)
Q Consensus        79 ~l~~L~~L~~L~l~~~~~   96 (411)
                      ++. ..+|++|++++|++
T Consensus        99 ~~~-~~~l~~L~L~~Np~  115 (156)
T d2ifga3          99 TVQ-GLSLQELVLSGNPL  115 (156)
T ss_dssp             TTC-SCCCCEEECCSSCC
T ss_pred             hhc-cccccccccCCCcc
Confidence            554 44799999999986

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.91  E-value=2e-11  Score=101.86  Aligned_cols=122  Identities=21%  Similarity=0.263  Sum_probs=96.6

Q ss_pred             cCcEEEecCCc--CCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEe
Q 038576           15 NLQTLSLDDCE--LGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYI   91 (411)
Q Consensus        15 ~L~~L~l~~~~--l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l   91 (411)
                      .++.+++++..  +.. +..+..+++|++|++++|.|+.++ .++.+++|++|++++ +.+++++.. ...+++|++|++
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~-N~i~~i~~~-~~~~~~L~~L~l  100 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGR-NLIKKIENL-DAVADTLEELWI  100 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCE-EEECSCSSH-HHHHHHCCEEEC
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcc-ccccccccc-cccccccccccc
Confidence            34566666542  555 577889999999999999999886 588899999999999 578888753 455678999999


Q ss_pred             cccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc--ccccCCCCcEEEEEec
Q 038576           92 GQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR--DLSFFKMLQRYRILIG  153 (411)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~i~~~  153 (411)
                      ++|.+..              ...+.++++|++|++++|.+..++.  .+..+++|+.|++..+
T Consensus       101 ~~N~i~~--------------l~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         101 SYNQIAS--------------LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             SEEECCC--------------HHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred             ccccccc--------------cccccccccccccccccchhccccccccccCCCccceeecCCC
Confidence            9998742              3557788899999999998877753  5778899999988743

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.70  E-value=1.5e-09  Score=98.54  Aligned_cols=90  Identities=18%  Similarity=0.171  Sum_probs=55.6

Q ss_pred             CCChhhhccccCcEEEecCCcCCC--C----ccccccccCcEEEeeCCccc-----------cchHHhcCCCCCCEEecC
Q 038576            5 ALPSSLGLLQNLQTLSLDDCELGD--M----AIIGDLKKLVILALRGSDME-----------ELAGEIGQLTQLRLLNLS   67 (411)
Q Consensus         5 ~lp~~l~~l~~L~~L~l~~~~l~~--~----~~l~~l~~L~~L~L~~~~l~-----------~lp~~i~~l~~L~~L~L~   67 (411)
                      .+...+.+...|+.|++++|.+.+  .    ..+...++|+.|+++++...           .+...+..+++|++|+++
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            344556677778888888877654  2    34556677888887765332           122345567778888887


Q ss_pred             CCCCccc-----cCcccccCCCCccEEEeccccc
Q 038576           68 KCFELKV-----IPPNVISSLSRLEELYIGQSPI   96 (411)
Q Consensus        68 ~c~~~~~-----~~~~~l~~L~~L~~L~l~~~~~   96 (411)
                      +| .+..     +... +...++|++|++++|.+
T Consensus       102 ~n-~i~~~~~~~l~~~-l~~~~~L~~L~l~~n~l  133 (344)
T d2ca6a1         102 DN-AFGPTAQEPLIDF-LSKHTPLEHLYLHNNGL  133 (344)
T ss_dssp             SC-CCCTTTHHHHHHH-HHHCTTCCEEECCSSCC
T ss_pred             cc-ccccccccchhhh-hcccccchheecccccc
Confidence            74 3333     2221 44567777787777765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=4e-09  Score=99.10  Aligned_cols=88  Identities=25%  Similarity=0.384  Sum_probs=66.3

Q ss_pred             hhhccccCcEEEecCCcCCC--C----ccccccccCcEEEeeCCcccc-----chHHhc-CCCCCCEEecCCCCCccccC
Q 038576            9 SLGLLQNLQTLSLDDCELGD--M----AIIGDLKKLVILALRGSDMEE-----LAGEIG-QLTQLRLLNLSKCFELKVIP   76 (411)
Q Consensus         9 ~l~~l~~L~~L~l~~~~l~~--~----~~l~~l~~L~~L~L~~~~l~~-----lp~~i~-~l~~L~~L~L~~c~~~~~~~   76 (411)
                      -+..++++|+|+|++|.+++  .    ..+..+++|++|++++|.++.     +...+. ...+|++|++++| .+++..
T Consensus        22 l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~it~~~  100 (460)
T d1z7xw1          22 LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAG  100 (460)
T ss_dssp             HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGG
T ss_pred             HHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCC-Cccccc
Confidence            36678999999999999876  2    446788999999999998863     222232 2357999999996 565432


Q ss_pred             c----ccccCCCCccEEEecccccc
Q 038576           77 P----NVISSLSRLEELYIGQSPIQ   97 (411)
Q Consensus        77 ~----~~l~~L~~L~~L~l~~~~~~   97 (411)
                      .    ..+..+++|++|++++|.+.
T Consensus       101 ~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         101 CGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             cccccchhhccccccccccccccch
Confidence            1    22678999999999998764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.1e-07  Score=75.83  Aligned_cols=120  Identities=21%  Similarity=0.122  Sum_probs=60.1

Q ss_pred             cCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCc--ccccCCCCccEEEec
Q 038576           15 NLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPP--NVISSLSRLEELYIG   92 (411)
Q Consensus        15 ~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~--~~l~~L~~L~~L~l~   92 (411)
                      ..+.|++++..  ..+.+..+..+..+....+....++....++++|++|++++ +.++.++.  ..+..+++|+.|+++
T Consensus        23 ~~~~Ldls~l~--~~~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~-N~i~~l~~~~~~~~~l~~L~~L~Ls   99 (162)
T d1koha1          23 SQQALDLKGLR--SDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLS   99 (162)
T ss_dssp             SSCCBCCCCCS--SCTTTTTTTCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCS-SCCCCCSGGGTHHHHSTTCCCCCCT
T ss_pred             hhCeeecccCC--CCchhhhccchhhcchhhhHhhhhHHHHHhCCCCCEeeCCC-ccccCCchhHHHHhhCCcccccccc
Confidence            34556665443  11122222333333333332233333445677777777777 56665542  224567777777777


Q ss_pred             ccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc--------ccccCCCCcEEE
Q 038576           93 QSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR--------DLSFFKMLQRYR  149 (411)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--------~l~~~~~L~~L~  149 (411)
                      +|.+..  ++         ....+ ...+|+.+++.+|.......        .+..+++|+.|+
T Consensus       100 ~N~i~~--l~---------~l~~l-~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         100 GNELKS--ER---------ELDKI-KGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             TSCCCC--GG---------GHHHH-TTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             cCcccc--ch---------hhhhh-hccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            776643  11         11222 23356777777776443321        134567777664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=8.4e-07  Score=70.60  Aligned_cols=89  Identities=21%  Similarity=0.237  Sum_probs=56.4

Q ss_pred             ccccccCcEEEeeCCccccc---hHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccccccCccccccccc
Q 038576           32 IGDLKKLVILALRGSDMEEL---AGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGER  108 (411)
Q Consensus        32 l~~l~~L~~L~L~~~~l~~l---p~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~  108 (411)
                      ...+++|++|++++|+++.+   +..+..+++|++|++++ +.+++++.-...+..+|+.+++.+|++.. ...    ..
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l~~~~L~~L~L~~Npl~~-~~~----~~  134 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNSLSD-TFR----DQ  134 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTT-SCCCCGGGHHHHTTCCCSSCCCTTSTTSS-SSS----SH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCccccccccc-CccccchhhhhhhccccceeecCCCCcCc-Ccc----cc
Confidence            34678888888888887754   44567788888888888 67777765222344568888888887753 110    00


Q ss_pred             cccchhhccCCCCCCEEE
Q 038576          109 RNASLDELNNLSKLTSLE  126 (411)
Q Consensus       109 ~~~~~~~l~~l~~L~~L~  126 (411)
                      ..-....+..+|+|+.||
T Consensus       135 ~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         135 STYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHHTTSTTCCEET
T ss_pred             hhHHHHHHHHCCCCCEEC
Confidence            001123356677777775

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.86  E-value=3.1e-06  Score=76.08  Aligned_cols=135  Identities=13%  Similarity=0.132  Sum_probs=91.2

Q ss_pred             hccccCcEEEecCCcCCC--C----ccccccccCcEEEeeCCcccc------chHHhcCCCCCCEEecCCCCCccc----
Q 038576           11 GLLQNLQTLSLDDCELGD--M----AIIGDLKKLVILALRGSDMEE------LAGEIGQLTQLRLLNLSKCFELKV----   74 (411)
Q Consensus        11 ~~l~~L~~L~l~~~~l~~--~----~~l~~l~~L~~L~L~~~~l~~------lp~~i~~l~~L~~L~L~~c~~~~~----   74 (411)
                      .....|+.++++++.+++  .    ..+.....|++|++++|.+..      +...+..+++|++|++++| .+..    
T Consensus       155 ~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~  233 (344)
T d2ca6a1         155 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSS  233 (344)
T ss_dssp             HTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHH
T ss_pred             ccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccc-cccccccc
Confidence            456788999999988765  2    335567899999999998762      2334677899999999985 4543    


Q ss_pred             -cCcccccCCCCccEEEecccccccCccccccccccccchhhccC--CCCCCEEEEeeccCCc-----CCcccc-cCCCC
Q 038576           75 -IPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNN--LSKLTSLEILIQDEKT-----LPRDLS-FFKML  145 (411)
Q Consensus        75 -~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~-----~~~~l~-~~~~L  145 (411)
                       +... +..+++|++|++++|.+....+.        .....+..  ...|++|++++|.+..     +...+. .+++|
T Consensus       234 ~L~~~-l~~~~~L~~L~Ls~n~i~~~g~~--------~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L  304 (344)
T d2ca6a1         234 ALAIA-LKSWPNLRELGLNDCLLSARGAA--------AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL  304 (344)
T ss_dssp             HHHHH-GGGCTTCCEEECTTCCCCHHHHH--------HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTC
T ss_pred             ccccc-ccccccchhhhhhcCccCchhhH--------HHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCC
Confidence             2222 67889999999999987540010        12233333  3679999999987432     233332 56789


Q ss_pred             cEEEEEecCC
Q 038576          146 QRYRILIGDS  155 (411)
Q Consensus       146 ~~L~i~~~~~  155 (411)
                      ++|++..+..
T Consensus       305 ~~L~l~~N~~  314 (344)
T d2ca6a1         305 LFLELNGNRF  314 (344)
T ss_dssp             CEEECTTSBS
T ss_pred             CEEECCCCcC
Confidence            9998865443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.29  E-value=7.7e-05  Score=59.10  Aligned_cols=83  Identities=13%  Similarity=0.134  Sum_probs=47.5

Q ss_pred             ccccCcEEEecCCc-CCC--C----ccccccccCcEEEeeCCccc-----cchHHhcCCCCCCEEecCCCCCccccCc--
Q 038576           12 LLQNLQTLSLDDCE-LGD--M----AIIGDLKKLVILALRGSDME-----ELAGEIGQLTQLRLLNLSKCFELKVIPP--   77 (411)
Q Consensus        12 ~l~~L~~L~l~~~~-l~~--~----~~l~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~L~~c~~~~~~~~--   77 (411)
                      +.++|+.|+|+++. +..  .    ..+...++|++|++++|.+.     .+...+...+.|++|++++| .+..-..  
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n-~i~~~g~~~   91 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLAR   91 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehh-hcchHHHHH
Confidence            34677777777643 544  1    33445566777777777665     23344555667777777774 3433211  


Q ss_pred             --ccccCCCCccEEEecccc
Q 038576           78 --NVISSLSRLEELYIGQSP   95 (411)
Q Consensus        78 --~~l~~L~~L~~L~l~~~~   95 (411)
                        .++..-++|++|+++++.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHHhCCcCCEEECCCCc
Confidence              124555667777766553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.83  E-value=0.00028  Score=55.65  Aligned_cols=111  Identities=15%  Similarity=0.167  Sum_probs=62.3

Q ss_pred             hccccCcEEEecCC-cCCC--C----ccccccccCcEEEeeCCccc-----cchHHhcCCCCCCEEecCCCCCccc----
Q 038576           11 GLLQNLQTLSLDDC-ELGD--M----AIIGDLKKLVILALRGSDME-----ELAGEIGQLTQLRLLNLSKCFELKV----   74 (411)
Q Consensus        11 ~~l~~L~~L~l~~~-~l~~--~----~~l~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~L~~c~~~~~----   74 (411)
                      .+.+.|++|+++++ .++.  .    ..+...++|++|++++|.+.     .+...+...+.++.+++++|..-.+    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            45577888888874 3654  2    33446677888888888765     2334556677788888877432211    


Q ss_pred             cCcccccCCCCccEEEeccc--ccccCccccccccccccchhhccCCCCCCEEEEeec
Q 038576           75 IPPNVISSLSRLEELYIGQS--PIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQ  130 (411)
Q Consensus        75 ~~~~~l~~L~~L~~L~l~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  130 (411)
                      +... +...++|+.++++.+  .+..        .+.......+...+.|++|++.++
T Consensus        94 l~~~-l~~~~~L~~l~L~l~~n~i~~--------~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          94 LVEA-LQSNTSLIELRIDNQSQPLGN--------NVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHG-GGGCSSCCEEECCCCSSCCCH--------HHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHH-HHhCccccEEeeccCCCcCcH--------HHHHHHHHHHHhCCCcCEEeCcCC
Confidence            1122 556677777666533  2211        111123344445566666666543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.80  E-value=0.00052  Score=54.07  Aligned_cols=86  Identities=13%  Similarity=0.113  Sum_probs=63.4

Q ss_pred             hhhccccCcEEEecCCcCCC--C----ccccccccCcEEEeeCCccc-----cchHHhcCCCCCCEEecCCCCCccccCc
Q 038576            9 SLGLLQNLQTLSLDDCELGD--M----AIIGDLKKLVILALRGSDME-----ELAGEIGQLTQLRLLNLSKCFELKVIPP   77 (411)
Q Consensus         9 ~l~~l~~L~~L~l~~~~l~~--~----~~l~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~L~~c~~~~~~~~   77 (411)
                      .+....+|++|++++|.+.+  .    ..+...+.|++|++++|.+.     .+...+...+.|++|+++++ ....+..
T Consensus        39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n-~~~~~g~  117 (167)
T d1pgva_          39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ-RQSVLGN  117 (167)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC-SSCCCCH
T ss_pred             HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC-cCCCccH
Confidence            46677889999999999876  2    44556789999999999887     24456778899999999984 3333221


Q ss_pred             -------ccccCCCCccEEEecccc
Q 038576           78 -------NVISSLSRLEELYIGQSP   95 (411)
Q Consensus        78 -------~~l~~L~~L~~L~l~~~~   95 (411)
                             .++..-++|+.|+++.+.
T Consensus       118 ~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         118 QVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHHhCCCccEeeCcCCC
Confidence                   125566888888887654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.10  E-value=0.002  Score=50.37  Aligned_cols=87  Identities=14%  Similarity=0.087  Sum_probs=65.2

Q ss_pred             hhhccccCcEEEecCCcCCC--C----ccccccccCcEEEeeCCccc-----cchHHhcCCCCCCEEecCCC-CCccc--
Q 038576            9 SLGLLQNLQTLSLDDCELGD--M----AIIGDLKKLVILALRGSDME-----ELAGEIGQLTQLRLLNLSKC-FELKV--   74 (411)
Q Consensus         9 ~l~~l~~L~~L~l~~~~l~~--~----~~l~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~L~~c-~~~~~--   74 (411)
                      .+....+|+.|++++|.+++  .    ..+...+.++.+++++|.+.     .+...+...++|+.++++.+ +.+.+  
T Consensus        41 al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~  120 (166)
T d1io0a_          41 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV  120 (166)
T ss_dssp             HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred             HHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHH
Confidence            35678899999999999877  2    44567799999999999776     34466788899998877654 24433  


Q ss_pred             ---cCcccccCCCCccEEEeccccc
Q 038576           75 ---IPPNVISSLSRLEELYIGQSPI   96 (411)
Q Consensus        75 ---~~~~~l~~L~~L~~L~l~~~~~   96 (411)
                         +.. ++.+.++|+.|+++.+..
T Consensus       121 ~~~La~-~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         121 EMEIAN-MLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHH-HHHHCSSCCEEECCCSSH
T ss_pred             HHHHHH-HHHhCCCcCEEeCcCCCC
Confidence               222 266889999999987653